Psyllid ID: psy17528
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 366 | 2.2.26 [Sep-21-2011] | |||||||
| A1ZAI5 | 625 | Putative fatty acyl-CoA r | yes | N/A | 0.800 | 0.468 | 0.358 | 7e-60 | |
| Q5R834 | 515 | Fatty acyl-CoA reductase | yes | N/A | 0.786 | 0.559 | 0.376 | 4e-59 | |
| Q8WVX9 | 515 | Fatty acyl-CoA reductase | yes | N/A | 0.786 | 0.559 | 0.376 | 4e-59 | |
| Q922J9 | 515 | Fatty acyl-CoA reductase | yes | N/A | 0.786 | 0.559 | 0.369 | 5e-59 | |
| Q7ZXF5 | 515 | Fatty acyl-CoA reductase | N/A | N/A | 0.786 | 0.559 | 0.379 | 7e-59 | |
| Q66H50 | 515 | Fatty acyl-CoA reductase | yes | N/A | 0.786 | 0.559 | 0.373 | 9e-59 | |
| Q0P5J1 | 515 | Fatty acyl-CoA reductase | no | N/A | 0.795 | 0.565 | 0.350 | 5e-57 | |
| Q7TNT2 | 515 | Fatty acyl-CoA reductase | no | N/A | 0.795 | 0.565 | 0.350 | 4e-56 | |
| Q5ZM72 | 515 | Fatty acyl-CoA reductase | no | N/A | 0.786 | 0.559 | 0.363 | 1e-55 | |
| Q96K12 | 515 | Fatty acyl-CoA reductase | no | N/A | 0.795 | 0.565 | 0.350 | 2e-54 |
| >sp|A1ZAI5|FACR1_DROME Putative fatty acyl-CoA reductase CG5065 OS=Drosophila melanogaster GN=CG5065 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 231 bits (589), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 116/324 (35%), Positives = 177/324 (54%), Gaps = 31/324 (9%)
Query: 36 DETLSPIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVY 95
D + PI +FY +++FITG TGF+G +LVEKLLR CP+IR I LLIR + ++ R+
Sbjct: 113 DTSYVPIAQFYAGRSVFITGGTGFMGKVLVEKLLRSCPEIRNIYLLIRPKRGQEVSARLT 172
Query: 96 NYFNDAVFDRMRLECPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQL 155
N +F+ + R E P KV + G +
Sbjct: 173 ELLNAPLFESL-------------------------------RQEKPKELSKVIPISGDI 201
Query: 156 EADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALAKRMKGLK 215
++ G+S +D+ LL +++FH AATV+FDE ++ + IN+ GT+ ++ L RM L
Sbjct: 202 TSEELGISEKDQNLLCRNVSVVFHSAATVKFDEKLKLSVTINMLGTKRLVELCHRMLSLD 261
Query: 216 SFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTL 275
+ +HVSTAYCNCDR ++E Y P + +++ +L+ ++ + L +IG +PN+YT
Sbjct: 262 ALIHVSTAYCNCDRTDVSEVIYAPPYNPDDIISLINWLPEDILDQLTPRLIGKRPNTYTF 321
Query: 276 TKATAEDLVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQ 335
TKA AE ++ + LP+ ++RPSIV +L EP W+ FNG L G+ R +
Sbjct: 322 TKALAEHMLLKEAGNLPVAIVRPSIVTASLNEPFAGWVDNFNGPTGLVSALAKGMFRTMM 381
Query: 336 TDPNISMDVVPGDRVINAMAALAW 359
+ N D+VP D VIN M A AW
Sbjct: 382 CEKNYVADMVPVDIVINLMIAAAW 405
|
Catalyzes the reduction of saturated fatty acyl-CoA to fatty alcohols. Drosophila melanogaster (taxid: 7227) EC: 1EC: .EC: 2EC: .EC: 1EC: .EC: nEC: 2 |
| >sp|Q5R834|FACR1_PONAB Fatty acyl-CoA reductase 1 OS=Pongo abelii GN=FAR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 229 bits (583), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 120/319 (37%), Positives = 183/319 (57%), Gaps = 31/319 (9%)
Query: 42 IQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDA 101
I E+Y+ + + +TGATGFLG +L+EKLLR CP++ + +L+R + + +RV
Sbjct: 4 IPEYYEGKNVLLTGATGFLGKVLLEKLLRSCPKVNSVYVLVRQKAGQTPQERV------- 56
Query: 102 VFDRMRLECPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFG 161
++V G +FDR+R E P++ +K+ + +L
Sbjct: 57 -------------EEVLSG-----------KLFDRLRDENPDFREKIIAINSELTQPKLA 92
Query: 162 LSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVS 221
LS D+E++I T IIFH AATVRF+E++R A +NV T+ ++ LA++MK L+ F+HVS
Sbjct: 93 LSEEDKEVIIESTNIIFHCAATVRFNENLRDAVQLNVIATRQLILLAQQMKNLEVFMHVS 152
Query: 222 TAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAE 281
TAY C+RK I E YPP ++L + D + + +IG +PN+Y TKA AE
Sbjct: 153 TAYAYCNRKHIDEVVYPPPVDPKKLIDSLEWMDDGLVNDITPKLIGDRPNTYIYTKALAE 212
Query: 282 DLVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNIS 341
+V+Q G +L + ++RPSIV + +EP P WI FNG L + AG G++R ++ N
Sbjct: 213 YVVQQEGAKLNVAIVRPSIVGASWKEPFPGWIDNFNGPSGLFIAAGKGILRTIRASNNAL 272
Query: 342 MDVVPGDRVINAMAALAWY 360
D+VP D V+N A AWY
Sbjct: 273 ADLVPVDVVVNMSLAAAWY 291
|
Catalyzes the reduction of saturated fatty acyl-CoA with chain length C16 or C18 to fatty alcohols. Pongo abelii (taxid: 9601) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|Q8WVX9|FACR1_HUMAN Fatty acyl-CoA reductase 1 OS=Homo sapiens GN=FAR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 228 bits (582), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 120/319 (37%), Positives = 183/319 (57%), Gaps = 31/319 (9%)
Query: 42 IQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDA 101
I E+Y+ + + +TGATGFLG +L+EKLLR CP++ + +L+R + + +RV
Sbjct: 4 IPEYYEGKNVLLTGATGFLGKVLLEKLLRSCPKVNSVYVLVRQKAGQTPQERV------- 56
Query: 102 VFDRMRLECPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFG 161
++V G +FDR+R E P++ +K+ + +L
Sbjct: 57 -------------EEVLSG-----------KLFDRLRDENPDFREKIIAINSELTQPKLA 92
Query: 162 LSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVS 221
LS D+E++I T IIFH AATVRF+E++R A +NV T+ ++ LA++MK L+ F+HVS
Sbjct: 93 LSEEDKEVIIDSTNIIFHCAATVRFNENLRDAVQLNVIATRQLILLAQQMKNLEVFMHVS 152
Query: 222 TAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAE 281
TAY C+RK I E YPP ++L + D + + +IG +PN+Y TKA AE
Sbjct: 153 TAYAYCNRKHIDEVVYPPPVDPKKLIDSLEWMDDGLVNDITPKLIGDRPNTYIYTKALAE 212
Query: 282 DLVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNIS 341
+V+Q G +L + ++RPSIV + +EP P WI FNG L + AG G++R ++ N
Sbjct: 213 YVVQQEGAKLNVAIVRPSIVGASWKEPFPGWIDNFNGPSGLFIAAGKGILRTIRASNNAL 272
Query: 342 MDVVPGDRVINAMAALAWY 360
D+VP D V+N A AWY
Sbjct: 273 ADLVPVDVVVNMSLAAAWY 291
|
Catalyzes the reduction of saturated fatty acyl-CoA with chain length C16 or C18 to fatty alcohols. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|Q922J9|FACR1_MOUSE Fatty acyl-CoA reductase 1 OS=Mus musculus GN=Far1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 228 bits (581), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 118/319 (36%), Positives = 180/319 (56%), Gaps = 31/319 (9%)
Query: 42 IQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDA 101
I E+Y+ + I +TGATGFLG +L+EKLLR CP++ + +L+R + + +RV +
Sbjct: 4 IPEYYEGKNILLTGATGFLGKVLLEKLLRSCPRVNSVYVLVRQKAGQTPQERVEEILSSK 63
Query: 102 VFDRMRLECPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFG 161
+FD R+R E P++ +K+ + +L
Sbjct: 64 LFD-------------------------------RLRDENPDFREKIIAINSELTQPKLA 92
Query: 162 LSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVS 221
LS D+E++I T +IFH AATVRF+E++R A +NV T+ ++ LA++MK L+ F+HVS
Sbjct: 93 LSEEDKEIIIDSTNVIFHCAATVRFNENLRDAVQLNVIATRQLILLAQQMKNLEVFMHVS 152
Query: 222 TAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAE 281
TAY C+RK I E YPP ++L + D + + +IG +PN+Y TKA AE
Sbjct: 153 TAYAYCNRKHIDEVVYPPPVDPKKLIDSLEWMDDGLVNDITPKLIGDRPNTYIYTKALAE 212
Query: 282 DLVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNIS 341
+V+Q G +L + ++RPSIV + +EP P WI FNG L + AG G++R ++ N
Sbjct: 213 YVVQQEGAKLNVAIVRPSIVGASWKEPFPGWIDNFNGPSGLFIAAGKGILRTMRASNNAL 272
Query: 342 MDVVPGDRVINAMAALAWY 360
D+VP D V+N A AWY
Sbjct: 273 ADLVPVDVVVNTSLAAAWY 291
|
Catalyzes the reduction of saturated fatty acyl-CoA with chain length C16 or C18 to fatty alcohols. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|Q7ZXF5|FACR1_XENLA Fatty acyl-CoA reductase 1 OS=Xenopus laevis GN=far1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 228 bits (580), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 121/319 (37%), Positives = 177/319 (55%), Gaps = 31/319 (9%)
Query: 42 IQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDA 101
I EFY+ + + ITGATGF+G +L+EKLLR CP + + +L+R + +RV
Sbjct: 4 IPEFYQGKNVLITGATGFMGKVLLEKLLRSCPNTKAVYVLVRHKAGQKPRERVAEM---- 59
Query: 102 VFDRMRLECPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFG 161
+ C +FD++R E P+ A KV + +L
Sbjct: 60 ------MSC---------------------KLFDKLRDEQPDCAQKVIAISSELTQPELD 92
Query: 162 LSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVS 221
+S D++ LI I+FH AATVRF+E +R A +NV T+ +L LA++MK L+ F+HVS
Sbjct: 93 MSKEDQDTLIDCIDIVFHCAATVRFNESLRDAMQLNVIATRQLLYLAQKMKKLEVFIHVS 152
Query: 222 TAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAE 281
TAY NC+RK I E YPP ++L + D + + +IG +PN+YT TKA AE
Sbjct: 153 TAYANCNRKQIEEVVYPPPVDPKKLIESLEWMDDSLVNDITPKLIGDRPNTYTYTKALAE 212
Query: 282 DLVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNIS 341
+V+Q G +L I ++RPSIV + +EP P WI FNG L + AG G++R ++ N
Sbjct: 213 YVVQQEGSKLNIAIVRPSIVGASWKEPFPGWIDNFNGPSGLFIAAGKGILRTMRASNNAV 272
Query: 342 MDVVPGDRVINAMAALAWY 360
D++P D V+N A AWY
Sbjct: 273 ADLIPVDVVVNTTLAAAWY 291
|
Catalyzes the reduction of saturated fatty acyl-CoA with chain length C16 or C18 to fatty alcohols. Xenopus laevis (taxid: 8355) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|Q66H50|FACR1_RAT Fatty acyl-CoA reductase 1 OS=Rattus norvegicus GN=Far1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 227 bits (579), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 119/319 (37%), Positives = 182/319 (57%), Gaps = 31/319 (9%)
Query: 42 IQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDA 101
I E+Y+ + I +TGATGFLG +L+EKLLR CP++ + +L+R + + +RV
Sbjct: 4 IPEYYEGKNILLTGATGFLGKVLLEKLLRSCPKVNSVYVLVRQKAGQTPQERV------- 56
Query: 102 VFDRMRLECPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFG 161
+++ G +FDR+R E P++ K+ + +L
Sbjct: 57 -------------EEILSG-----------KLFDRLRDENPDFRQKIIAINSELTQPKLA 92
Query: 162 LSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVS 221
LS D+E++I T +IFH AATVRF+E++R A +NV T+ ++ LA++MK L+ F+HVS
Sbjct: 93 LSEEDKEIIIDSTNVIFHCAATVRFNENLRDAVQLNVIATRQLILLAQQMKNLEVFMHVS 152
Query: 222 TAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAE 281
TAY C+RK I E YPP ++L + D + + +IG +PN+Y TKA AE
Sbjct: 153 TAYAYCNRKHIDEVVYPPPVDPKKLIDSLEWMDDGLVNDITPKLIGDRPNTYIYTKALAE 212
Query: 282 DLVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNIS 341
+V+Q G +L + ++RPSIV + +EP P WI FNG L + AG G++R ++ N
Sbjct: 213 YVVQQEGAKLNVAIVRPSIVGASWKEPFPGWIDNFNGPSGLFIAAGKGILRTMRASNNAL 272
Query: 342 MDVVPGDRVINAMAALAWY 360
D+VP D V+N A AWY
Sbjct: 273 ADLVPVDVVVNTSLAAAWY 291
|
Catalyzes the reduction of saturated fatty acyl-CoA with chain length C16 or C18 to fatty alcohols. Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|Q0P5J1|FACR2_BOVIN Fatty acyl-CoA reductase 2 OS=Bos taurus GN=FAR2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 221 bits (564), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 113/322 (35%), Positives = 174/322 (54%), Gaps = 31/322 (9%)
Query: 39 LSPIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYF 98
+S I FY ++I ITGATGF+G +L+EKL R P ++ + +L+R + ++ QRV+
Sbjct: 1 MSMIAAFYGGKSILITGATGFMGKVLMEKLFRTSPDLKVVYILVRPKQGQTLQQRVFQIL 60
Query: 99 NDAVFDRMRLECPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEAD 158
+ +F+ +++ CPN +K+ + L +
Sbjct: 61 DSKLFE-------------------------------KVKEVCPNVHEKIRAISADLNQN 89
Query: 159 TFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFV 218
F +S D + L+S T IIFH AATVRFD+H+R A +NV TQ +L +A +M L++F+
Sbjct: 90 DFAISKEDMKELLSHTNIIFHCAATVRFDDHLRHAVQLNVTATQQLLLMASQMPKLEAFI 149
Query: 219 HVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKA 278
H+STA+ NC+ K I E YP +++ + D I + +IG PN+YT TKA
Sbjct: 150 HISTAFSNCNLKHIDEVVYPCPVEPKKIIDSMEWLDDAIIDEITPKLIGDWPNTYTYTKA 209
Query: 279 TAEDLVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDP 338
E +V+Q G L I ++RPSI+ T QEP P W+ NG L + AG G +R ++ P
Sbjct: 210 LGEVVVQQEGGNLNIAIIRPSIMGATWQEPFPGWVDNLNGPSGLIIAAGKGFLRSIRATP 269
Query: 339 NISMDVVPGDRVINAMAALAWY 360
D++P D V+N A+ WY
Sbjct: 270 MAVADLIPADTVVNLTLAVGWY 291
|
Catalyzes the reduction of fatty acyl-CoA to fatty alcohols. The preferred substrates are C16, C18, C18:1 and C18:2 but low activity can be observed with C10-C14 substrates. Bos taurus (taxid: 9913) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|Q7TNT2|FACR2_MOUSE Fatty acyl-CoA reductase 2 OS=Mus musculus GN=Far2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 219 bits (557), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 113/322 (35%), Positives = 170/322 (52%), Gaps = 31/322 (9%)
Query: 39 LSPIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYF 98
+S I FY +++I ITGATGFLG +L+EKL R P ++ I +L+R + ++ +RV+
Sbjct: 1 MSMIAAFYSNKSILITGATGFLGKVLMEKLFRTSPHLKVIYILVRPKSGQTLQERVFQIL 60
Query: 99 NDAVFDRMRLECPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEAD 158
N + F++++ CPN +K+ + L
Sbjct: 61 NSKL-------------------------------FEKVKEVCPNVHEKIRPISADLNQR 89
Query: 159 TFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFV 218
F +S D + L+S T IIFH AATVRFD H+R A +NV TQ +L +A +M L++F+
Sbjct: 90 DFAISKEDVQELLSCTNIIFHCAATVRFDAHLREAVQLNVTATQQLLLMASQMPKLEAFI 149
Query: 219 HVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKA 278
H+STA+ NC+ I E YP ++ + D I + +IG +PN+YT TKA
Sbjct: 150 HISTAFSNCNLSHIDEVIYPCPVEPRKIIDSMEWLDDSIIEEITPKLIGDRPNTYTYTKA 209
Query: 279 TAEDLVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDP 338
E +V+Q L + ++RPSIV T QEP P W+ NG L + G G +R ++ P
Sbjct: 210 LGEIVVQQESGNLNVAIVRPSIVGATWQEPFPGWVDNLNGPSGLIIATGKGFLRSIKATP 269
Query: 339 NISMDVVPGDRVINAMAALAWY 360
DV+P D V+N A+ WY
Sbjct: 270 MAVADVIPVDTVVNLTIAVGWY 291
|
Catalyzes the reduction of fatty acyl-CoA to fatty alcohols. The preferred substrates are C16, C18, C18:1 and C18:2 but low activity can be observed with C10-C14 substrates. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|Q5ZM72|FACR1_CHICK Fatty acyl-CoA reductase 1 OS=Gallus gallus GN=FAR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 217 bits (552), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 116/319 (36%), Positives = 175/319 (54%), Gaps = 31/319 (9%)
Query: 42 IQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDA 101
I E+Y+ + + +TGATGF+G +L+EKLLR CP+++ + +L+R + + R+
Sbjct: 4 IPEYYEGKNVLLTGATGFMGKVLLEKLLRSCPKVKAVYVLVRPKAGQTPEARIEEI---- 59
Query: 102 VFDRMRLECPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFG 161
C +FDR+R E P++ +K+ ++ +L
Sbjct: 60 ------TSC---------------------KLFDRLREEQPDFKEKIIVITSELTQPELD 92
Query: 162 LSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVS 221
LS +E LI IIFH AATVRF+E +R A +NV T+ +L+LA++M L+ F+HVS
Sbjct: 93 LSNPVKEKLIECINIIFHCAATVRFNETLRDAVQLNVLSTKQLLSLAQQMTNLEVFMHVS 152
Query: 222 TAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAE 281
TAY C+RK I E YPP ++L + D + + +IG +PN+YT TKA AE
Sbjct: 153 TAYAYCNRKHIEEVVYPPPVDPKKLMDSLEWMDDSLVNDITPKLIGDRPNTYTYTKALAE 212
Query: 282 DLVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNIS 341
+V+Q G L ++RPSIV + +EP P WI FNG L + AG G++R ++
Sbjct: 213 YVVQQEGARLNTAIIRPSIVGASWKEPFPGWIDNFNGPSGLFIAAGKGILRTMRASNGAV 272
Query: 342 MDVVPGDRVINAMAALAWY 360
D+VP D V+N A AWY
Sbjct: 273 ADLVPVDVVVNMTLAAAWY 291
|
Catalyzes the reduction of saturated fatty acyl-CoA with chain length C16 or C18 to fatty alcohols. Gallus gallus (taxid: 9031) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|Q96K12|FACR2_HUMAN Fatty acyl-CoA reductase 2 OS=Homo sapiens GN=FAR2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 213 bits (542), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 113/322 (35%), Positives = 170/322 (52%), Gaps = 31/322 (9%)
Query: 39 LSPIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYF 98
+S I FY ++I ITGATGFLG +L+EKL R P ++ I +L+R + ++ QRV+
Sbjct: 1 MSTIAAFYGGKSILITGATGFLGKVLMEKLFRTSPDLKVIYILVRPKAGQTLQQRVFQIL 60
Query: 99 NDAVFDRMRLECPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEAD 158
+ +F+ +++ CPN +K+ + L +
Sbjct: 61 DSKLFE-------------------------------KVKEVCPNVHEKIRAIYADLNQN 89
Query: 159 TFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFV 218
F +S D + L+S T IIFH AATVRFD+ +R A +NV T+ +L +A +M L++F+
Sbjct: 90 DFAISKEDMQELLSCTNIIFHCAATVRFDDTLRHAVQLNVTATRQLLLMASQMPKLEAFI 149
Query: 219 HVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKA 278
H+STAY NC+ K I E YP +++ + D I + +I PN YT TKA
Sbjct: 150 HISTAYSNCNLKHIDEVIYPCPVEPKKIIDSLEWLDDAIIDEITPKLIRDWPNIYTYTKA 209
Query: 279 TAEDLVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDP 338
E +V+Q L I ++RPSIV T QEP P W+ NG + + G G +R ++ P
Sbjct: 210 LGEMVVQQESRNLNIAIIRPSIVGATWQEPFPGWVDNINGPNGIIIATGKGFLRAIKATP 269
Query: 339 NISMDVVPGDRVINAMAALAWY 360
DV+P D V+N M A+ WY
Sbjct: 270 MAVADVIPVDTVVNLMLAVGWY 291
|
Catalyzes the reduction of fatty acyl-CoA to fatty alcohols. The preferred substrates are C16, C18, C18:1 and C18:2 but low activity can be observed with C10-C14 substrates. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 366 | ||||||
| 322803051 | 530 | hypothetical protein SINV_00151 [Solenop | 0.800 | 0.552 | 0.410 | 2e-67 | |
| 193622556 | 551 | PREDICTED: putative fatty acyl-CoA reduc | 0.808 | 0.537 | 0.412 | 3e-67 | |
| 307169656 | 500 | Fatty acyl-CoA reductase 1 [Camponotus f | 0.786 | 0.576 | 0.415 | 9e-66 | |
| 332030738 | 537 | Putative fatty acyl-CoA reductase [Acrom | 0.800 | 0.545 | 0.398 | 1e-65 | |
| 307176419 | 541 | Fatty acyl-CoA reductase 1 [Camponotus f | 0.800 | 0.541 | 0.407 | 1e-64 | |
| 307169657 | 521 | Fatty acyl-CoA reductase 1 [Camponotus f | 0.786 | 0.552 | 0.403 | 2e-64 | |
| 383865013 | 540 | PREDICTED: putative fatty acyl-CoA reduc | 0.882 | 0.598 | 0.392 | 4e-64 | |
| 332021906 | 531 | Putative fatty acyl-CoA reductase [Acrom | 0.797 | 0.549 | 0.401 | 5e-64 | |
| 291228392 | 515 | PREDICTED: male sterility protein 2-like | 0.786 | 0.559 | 0.391 | 7e-64 | |
| 328720028 | 553 | PREDICTED: putative fatty acyl-CoA reduc | 0.819 | 0.542 | 0.386 | 3e-62 |
| >gi|322803051|gb|EFZ23139.1| hypothetical protein SINV_00151 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 133/324 (41%), Positives = 188/324 (58%), Gaps = 31/324 (9%)
Query: 36 DETLSPIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVY 95
+E LSPIQEFY QTIFITG TGF+G LL+EK+LR CP + I LL+R + + QR
Sbjct: 33 NEKLSPIQEFYYGQTIFITGGTGFMGKLLIEKILRTCPGVTSIYLLVRPKKGKDVHQR-- 90
Query: 96 NYFNDAVFDRMRLECPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQL 155
+ +FD DAVF ++R E P + ++ + G
Sbjct: 91 ---TEEIFD--------------------------DAVFMKLRDELPKFRHQIVAIAGDC 121
Query: 156 EADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALAKRMKGLK 215
G+SA+D LI + +I+FH+AATVRFDE ++ A INV+ T+ ++ L K + LK
Sbjct: 122 SQPNLGMSAQDRATLIREVSIVFHVAATVRFDEKLKLAVPINVRSTRDVVNLCKEITNLK 181
Query: 216 SFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTL 275
SF+HVSTAY NC + I EKFY P +++L AL+ D+ + ++G PN+YT
Sbjct: 182 SFIHVSTAYANCPQSLIEEKFYEPPMDSDKLIALMECVEDKLAEDITPQLLGKWPNTYTF 241
Query: 276 TKATAEDLVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQ 335
TKA AE+++R+ +LP + RP+IV T QEPM WI G +A GAGTGL+R +
Sbjct: 242 TKAVAENVIRKQAGDLPAGIFRPAIVISTYQEPMRGWIDNLYGPTGVAAGAGTGLLRSIH 301
Query: 336 TDPNISMDVVPGDRVINAMAALAW 359
D ++ +VVP D +NA+ A AW
Sbjct: 302 CDGSVHANVVPADLTVNALIACAW 325
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|193622556|ref|XP_001950244.1| PREDICTED: putative fatty acyl-CoA reductase CG5065-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 261 bits (667), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 135/327 (41%), Positives = 189/327 (57%), Gaps = 31/327 (9%)
Query: 28 DEGKELLSDETLSPIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGS 87
+E +E+ E SP+QEF++D +F+TG TGF+G +LVEKLLR CP I+ I LLIR++
Sbjct: 44 NEPREIEESEIGSPVQEFFRDGVVFLTGGTGFMGKVLVEKLLRTCPHIKHIYLLIRSKKG 103
Query: 88 TSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADK 147
++ QR LE + F D +F R++ E P Y K
Sbjct: 104 KNVDQR--------------LE-----------------DIFEDRLFKRLKHEVPKYYHK 132
Query: 148 VDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILAL 207
V V G GLS LI++ IIFH AATVRFDEHIR A NINV GT+ +L+L
Sbjct: 133 VSGVAGDCSLPGLGLSVSSRNTLINEVNIIFHGAATVRFDEHIRVAMNINVSGTRELLSL 192
Query: 208 AKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267
A+++ LK HVSTAY NC+R + EKFY P+ E++ L++ D+ + + + IIG
Sbjct: 193 ARKITNLKVMAHVSTAYSNCNRLHVEEKFYDPIADYEDVLKLISSNDDQTLQDMTKEIIG 252
Query: 268 GKPNSYTLTKATAEDLVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAG 327
PN+Y TK+ AED +R+ +LPI V RP++V T +EP+ WI G L +GAG
Sbjct: 253 DLPNTYAFTKSLAEDAIRREAQDLPILVFRPTVVIATYREPVRGWIDNVYGPTGLIVGAG 312
Query: 328 TGLIRVVQTDPNISMDVVPGDRVINAM 354
TG++ D NI D++P D V+NA+
Sbjct: 313 TGVLHTYFGDSNIITDMIPVDMVVNAL 339
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307169656|gb|EFN62238.1| Fatty acyl-CoA reductase 1 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 256 bits (655), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 133/320 (41%), Positives = 189/320 (59%), Gaps = 32/320 (10%)
Query: 40 SPIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFN 99
S I +F+ I ITG +GFLG LL+EKLLRCCP I KI +L+R + S QR F
Sbjct: 26 SEIPQFFAGCNILITGTSGFLGILLIEKLLRCCPDIEKIYVLMRAKKEKSPEQR----FQ 81
Query: 100 DAVFDRMRLECPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADT 159
+ +FN+ V+D+++ E PN++ KV ++ G L
Sbjct: 82 E---------------------------HFNEPVYDKLKKEQPNFSTKVIMIQGDLSKLD 114
Query: 160 FGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVH 219
GLS + + ++ T IIFH AATVRF+EH+R A NINV+GT+ L LAK M LK+FV+
Sbjct: 115 LGLSPENRKRILD-TNIIFHAAATVRFNEHLRLAVNINVRGTKQFLLLAKEMPDLKAFVY 173
Query: 220 VSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKAT 279
VSTAY +C KFI EKFYPP ++++ L+ DE++ L +IG PN+Y+ TKA
Sbjct: 174 VSTAYSHCIHKFIEEKFYPPPIESDKILTLLDILDDEQVEKLTPALIGKWPNTYSYTKAI 233
Query: 280 AEDLVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPN 339
AED++RQ +E+P+C++RPSIV T ++P+P WI G A+ GL+R + P
Sbjct: 234 AEDVMRQYSNEIPVCIVRPSIVVSTAKDPIPGWINNVYGAAGAAMSTALGLLRTMYCVPE 293
Query: 340 ISMDVVPGDRVINAMAALAW 359
I D+VP D VI+ + +W
Sbjct: 294 IVADLVPADYVISHLIVASW 313
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332030738|gb|EGI70414.1| Putative fatty acyl-CoA reductase [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 129/324 (39%), Positives = 185/324 (57%), Gaps = 31/324 (9%)
Query: 36 DETLSPIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVY 95
+E LSPIQEFY Q+IFITG TGF+G LL+EKLLR CP + I LL+R + + QR
Sbjct: 33 NEKLSPIQEFYNGQSIFITGGTGFMGKLLIEKLLRTCPGVTSIYLLVRPKKGKDVHQRTE 92
Query: 96 NYFNDAVFDRMRLECPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQL 155
+ F+D V F ++R E P + ++ + G
Sbjct: 93 DIFDDTV-------------------------------FSKLRDEQPKFRHQIVAIAGDC 121
Query: 156 EADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALAKRMKGLK 215
G+SA+D LI + +I+FH+AATVRFDE ++ A INV+ T+ ++ L K + LK
Sbjct: 122 SQPNLGISAQDRATLIREVSIVFHVAATVRFDEKLKLAVPINVRSTRDVVNLCKEITNLK 181
Query: 216 SFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTL 275
SF+HVSTAY NC + I EKFY P +++L AL+ D+ + ++G PN+YT
Sbjct: 182 SFIHVSTAYANCPQSVIEEKFYDPPMDSDKLIALIECIEDKLAEDITPQLLGKWPNTYTF 241
Query: 276 TKATAEDLVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQ 335
TKA AE+++R+ +LP+ + RP+IV T EP WI G +A GAGTGL+R +
Sbjct: 242 TKAVAENVIRKQAGDLPVGIFRPAIVISTYLEPARGWIDNLYGPTGVAAGAGTGLLRSIH 301
Query: 336 TDPNISMDVVPGDRVINAMAALAW 359
D ++ +VVP D +NA+ A AW
Sbjct: 302 CDGSVHANVVPADLTVNALIACAW 325
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307176419|gb|EFN65993.1| Fatty acyl-CoA reductase 1 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 132/324 (40%), Positives = 187/324 (57%), Gaps = 31/324 (9%)
Query: 36 DETLSPIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVY 95
+E LSPIQEFY Q+IFITG TGF+G LL+EKLLR CP + I LL+R + + QR
Sbjct: 39 NENLSPIQEFYYGQSIFITGGTGFMGKLLIEKLLRTCPGVASIYLLVRPKKGKDVHQRT- 97
Query: 96 NYFNDAVFDRMRLECPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQL 155
+ +FD D +F ++R E P + ++ + G
Sbjct: 98 ----EEIFD--------------------------DPLFIKLRDEQPKFRHQIVAIAGDC 127
Query: 156 EADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALAKRMKGLK 215
G+S +D +I + +I+FH+AATVRFDE ++ A INV+ T+ IL L K + LK
Sbjct: 128 SQPNLGISWQDRTTIIREVSIVFHVAATVRFDEKLKLAVPINVRSTRDILNLCKEIPNLK 187
Query: 216 SFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTL 275
SFVHVSTAY NC ++ I EKFY P +++L AL+ D+ + ++G PN+YT
Sbjct: 188 SFVHVSTAYANCPQRVIEEKFYDPPMDSDKLIALMECVEDKLAEDITPQLLGKWPNTYTY 247
Query: 276 TKATAEDLVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQ 335
TKA AE+++R+ +LPI V RP+IV T EP+ WI G +A GAGTGL+R +
Sbjct: 248 TKAVAENVIRKQVGDLPIGVFRPAIVISTYIEPVRGWIDNLYGPTGVAAGAGTGLLRSIH 307
Query: 336 TDPNISMDVVPGDRVINAMAALAW 359
D ++ +VVP D +NA+ A AW
Sbjct: 308 CDGSVHANVVPADFTVNALIACAW 331
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307169657|gb|EFN62239.1| Fatty acyl-CoA reductase 1 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 129/320 (40%), Positives = 189/320 (59%), Gaps = 32/320 (10%)
Query: 40 SPIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFN 99
S I +F+ + ITGA+GF+G+LLVEKLLRCCP I K+ +L+RT+ S QR F
Sbjct: 16 SEIPQFFAGCNVLITGASGFVGTLLVEKLLRCCPDIEKMYILMRTKKEKSSEQR----FK 71
Query: 100 DAVFDRMRLECPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADT 159
+ +FN V+D+++ E PN+ KV ++ +
Sbjct: 72 E---------------------------HFNSPVYDKLKKEQPNFNVKVIMIEADISKLD 104
Query: 160 FGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVH 219
FGLS + + ++ T IIFH AATVRF+EH+R A NINV+GT+ L LAK M LK+F++
Sbjct: 105 FGLSPENRKRILD-TNIIFHAAATVRFNEHLRLAVNINVRGTKQFLLLAKEMPDLKAFIY 163
Query: 220 VSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKAT 279
+STA+ +C KFI EKFYPP ++++ L+ +DE++ L +IG PN+Y TKA
Sbjct: 164 ISTAFSHCIHKFIEEKFYPPPIESDKILTLLDILNDEQMEKLIPTLIGKWPNTYAFTKAI 223
Query: 280 AEDLVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPN 339
AED VRQ +P C++RPSI+ T++EPMP WI G + + +GA GL+R + P
Sbjct: 224 AEDTVRQYSIGIPTCIVRPSIIISTVKEPMPGWINNVYGAVGVVMGAAIGLLRTLHCPPE 283
Query: 340 ISMDVVPGDRVINAMAALAW 359
++VP D VI+ + +W
Sbjct: 284 YVAELVPADYVISHLVVASW 303
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383865013|ref|XP_003707971.1| PREDICTED: putative fatty acyl-CoA reductase CG5065-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 251 bits (641), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 140/357 (39%), Positives = 196/357 (54%), Gaps = 34/357 (9%)
Query: 3 AELMKEISGKSHHPDLMDWNLLDKEDEGKELLSDETLSPIQEFYKDQTIFITGATGFLGS 62
E++ E G+S +++ N D+ E ++ LSPIQ FY Q IF+TG TGF+G
Sbjct: 2 VEVLSEPRGQSQETTVLE-NGYDRNYEA--IMEQPKLSPIQTFYDGQGIFVTGGTGFMGK 58
Query: 63 LLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGIT 122
LLVEKLLR CP I I LLIR + + QRV + +FD
Sbjct: 59 LLVEKLLRECPGISFIYLLIRPKKGKDMHQRV-----EEIFD------------------ 95
Query: 123 HRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAA 182
D +FD++R + P + ++ V G GLS D + + +I+FH+AA
Sbjct: 96 --------DPLFDKLREKHPKFRHQIIAVAGDCTEPGLGLSEVDRSTITQRVSIVFHVAA 147
Query: 183 TVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFT 242
TVRFDE ++ A INV+ + I+ L K M LKSFVHVSTAY NC R FI EK Y P
Sbjct: 148 TVRFDEKMKLAVPINVRSPKDIIHLCKEMPNLKSFVHVSTAYANCPRDFIEEKVYDPPME 207
Query: 243 AEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVGHELPICVLRPSIVF 302
A++L LV ++ + + ++G PN+YT TKA AE ++ + +LP+ + RP+IV
Sbjct: 208 ADKLITLVDCMDEKLVDEITPRLLGSWPNTYTFTKALAESVIAKEAGDLPVGIFRPAIVI 267
Query: 303 PTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAW 359
T +EP WI G +A GAGTG++R + D +I +VVPGD INA+ A AW
Sbjct: 268 STYREPTRGWIDNMYGPTGVAAGAGTGVLRSIHCDGSIQANVVPGDLTINALIACAW 324
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332021906|gb|EGI62240.1| Putative fatty acyl-CoA reductase [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 251 bits (640), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 130/324 (40%), Positives = 184/324 (56%), Gaps = 32/324 (9%)
Query: 36 DETLSPIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVY 95
+++ S I +F+ + ITG +GFLG LL+EKLLRCCP I K+ + +R + + QR
Sbjct: 22 NDSQSEIPQFFAGCNVLITGGSGFLGQLLIEKLLRCCPGIEKLCIFMRAKKGKTPEQR-- 79
Query: 96 NYFNDAVFDRMRLECPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQL 155
F+ +FND V+D+++ E PN++ K+ +V L
Sbjct: 80 -------FEE----------------------HFNDPVYDKLKKEQPNFSTKIIMVHADL 110
Query: 156 EADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALAKRMKGLK 215
GLS + E L+ T +IFH AATVRF+E IR A NIN++GT+ +L LAK M LK
Sbjct: 111 SKLDLGLSKENRENLL-DTNVIFHAAATVRFNESIRIAVNINIRGTKQLLLLAKEMPKLK 169
Query: 216 SFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTL 275
SFV+VSTAY +C FI EK+YP + + LV DE++ +I PNSY
Sbjct: 170 SFVYVSTAYSHCVNNFIEEKYYPAPMETDNILTLVDIMDDEKLNKFVPTLIDDWPNSYAY 229
Query: 276 TKATAEDLVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQ 335
TKA AED VRQ +P+C++RPSI+ PT EPM WI +G + + LG+ GL+R +
Sbjct: 230 TKAIAEDTVRQYSIGIPVCIVRPSIIIPTADEPMSGWINNIHGAIGIVLGSAIGLLRTLH 289
Query: 336 TDPNISMDVVPGDRVINAMAALAW 359
DPN + D+VP D VI+ + W
Sbjct: 290 CDPNKTADLVPADYVISHLIVAGW 313
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|291228392|ref|XP_002734152.1| PREDICTED: male sterility protein 2-like protein-like [Saccoglossus kowalevskii] | Back alignment and taxonomy information |
|---|
Score = 250 bits (639), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 125/319 (39%), Positives = 181/319 (56%), Gaps = 31/319 (9%)
Query: 42 IQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDA 101
+ EF+ + I +TGATGFLG +LVEKLLRCCP + K+ L++R + QR+ +
Sbjct: 5 VAEFFVGKKILVTGATGFLGKVLVEKLLRCCPDLDKLYLMVRPKSGQPPQQRIKDM---- 60
Query: 102 VFDRMRLECPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFG 161
L+C ++D++R E P+ +K+ + +
Sbjct: 61 ------LDC---------------------QLYDKVRKENPDGLNKIVAITSDMLEPNLA 93
Query: 162 LSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVS 221
L+ D ELL + I+FH+AAT++FDE ++ +Y +NVK Q I+ L K MK L+ VH S
Sbjct: 94 LTEEDRELLQKEINIVFHVAATIKFDEKMKLSYRLNVKSLQEIITLCKEMKNLEVLVHTS 153
Query: 222 TAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAE 281
TAYCNCDR+FI EK YPP ++L + DE L+ +I +PN+YT TKA AE
Sbjct: 154 TAYCNCDRQFIEEKIYPPPLDHQKLCQAMEWMDDEMFHLITPKLIDQRPNTYTFTKAIAE 213
Query: 282 DLVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNIS 341
++ + G LP+ ++RPSIV + +EPMP WI FNG + + G GL+R ++ DPN
Sbjct: 214 YVLAEEGAGLPVAIVRPSIVGASWKEPMPGWIDNFNGPSGVFIACGKGLLRSMRADPNAV 273
Query: 342 MDVVPGDRVINAMAALAWY 360
DVVP D +N M A AWY
Sbjct: 274 ADVVPVDIPVNVMIASAWY 292
|
Source: Saccoglossus kowalevskii Species: Saccoglossus kowalevskii Genus: Saccoglossus Family: Harrimaniidae Order: Class: Enteropneusta Phylum: Hemichordata Superkingdom: Eukaryota |
| >gi|328720028|ref|XP_001946873.2| PREDICTED: putative fatty acyl-CoA reductase CG5065-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 128/331 (38%), Positives = 185/331 (55%), Gaps = 31/331 (9%)
Query: 28 DEGKELLSDETLSPIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGS 87
+E +E+ E SPIQEF++D +F+TG TGF+G +LVEKLLR CP I+ I LLIR++
Sbjct: 45 NEPREVDESEIGSPIQEFFRDGVVFLTGGTGFMGKVLVEKLLRTCPHIKHIYLLIRSKKG 104
Query: 88 TSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADK 147
++ +R LE + F D +F R++ E P Y K
Sbjct: 105 KNVDER--------------LE-----------------DIFEDRLFKRLKYEVPKYYHK 133
Query: 148 VDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILAL 207
V + G GLS LI + IIFH AATVRFDEHIR A +INV GT+ ++ L
Sbjct: 134 VSGIAGDCSLPGLGLSVSSRNTLIKEVNIIFHGAATVRFDEHIRVAMDINVSGTREMMNL 193
Query: 208 AKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267
AK + LK H+STA+ NC+R + EKFY P+ +++ LV+ D+ + + I+G
Sbjct: 194 AKTITNLKVIAHISTAFSNCNRLHVDEKFYDPIADYKDVLKLVSSTDDQTLHGMTSKILG 253
Query: 268 GKPNSYTLTKATAEDLVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAG 327
PN+Y+ TK+ AED +R+ +LPI V RP++V T +EP+ WI G + +GA
Sbjct: 254 DLPNTYSFTKSLAEDAIRREAQDLPILVFRPTVVVGTYREPVRGWIDNVYGPTGIVVGAC 313
Query: 328 TGLIRVVQTDPNISMDVVPGDRVINAMAALA 358
TG++ D N D++P D V+NA+ A
Sbjct: 314 TGVLHTYFLDSNFVTDIIPVDIVVNALICAA 344
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 366 | ||||||
| ZFIN|ZDB-GENE-040426-2908 | 464 | far1 "fatty acyl CoA reductase | 0.647 | 0.510 | 0.413 | 1.1e-62 | |
| UNIPROTKB|F1SGA0 | 515 | FAR2 "Uncharacterized protein" | 0.655 | 0.466 | 0.383 | 2.3e-62 | |
| MGI|MGI:1914670 | 515 | Far1 "fatty acyl CoA reductase | 0.647 | 0.460 | 0.405 | 2.9e-62 | |
| UNIPROTKB|E9PNW8 | 335 | FAR1 "Fatty acyl-CoA reductase | 0.647 | 0.707 | 0.409 | 4.8e-62 | |
| UNIPROTKB|Q8WVX9 | 515 | FAR1 "Fatty acyl-CoA reductase | 0.647 | 0.460 | 0.409 | 4.8e-62 | |
| UNIPROTKB|A5PJQ0 | 515 | FAR1 "Uncharacterized protein" | 0.647 | 0.460 | 0.409 | 7.8e-62 | |
| RGD|1306647 | 515 | Far1 "fatty acyl CoA reductase | 0.647 | 0.460 | 0.405 | 1.3e-61 | |
| UNIPROTKB|Q66H50 | 515 | Far1 "Fatty acyl-CoA reductase | 0.647 | 0.460 | 0.405 | 1.3e-61 | |
| UNIPROTKB|E2R4R9 | 514 | FAR1 "Uncharacterized protein" | 0.647 | 0.461 | 0.409 | 1.3e-61 | |
| FB|FBgn0034145 | 625 | CG5065 [Drosophila melanogaste | 0.653 | 0.382 | 0.364 | 1.3e-61 |
| ZFIN|ZDB-GENE-040426-2908 far1 "fatty acyl CoA reductase 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 491 (177.9 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 98/237 (41%), Positives = 143/237 (60%)
Query: 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAAT 183
R+ + N +FDR+R + P++A K+ + L LSA D+E L ++FH AAT
Sbjct: 55 RIADMINCKLFDRLREDQPDFAGKIVAINSDLTQPNLDLSAEDQETLTGCINVVFHCAAT 114
Query: 184 VRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTA 243
+RF+E ++ A +NV TQ +++LA RMK L+ F+HVSTAY NCDR+ I E YPP
Sbjct: 115 IRFNEPLKDAMQLNVLATQKMVSLAHRMKHLEVFIHVSTAYANCDRELIEEVVYPPPVDY 174
Query: 244 EELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVGHELPICVLRPSIVFP 303
+L + D+ ++L+ ++G +PN+YT TKA AE LV+Q L I ++RPSIV
Sbjct: 175 RKLIDTLEWMDDKLVSLMTPRLLGERPNTYTYTKALAEQLVQQECGNLNIAIIRPSIVGA 234
Query: 304 TLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWY 360
+ +EP P WI FNG + + AG G++R ++ N D+VP D VIN A AWY
Sbjct: 235 SWKEPFPGWIDNFNGPSGIFIAAGKGILRTMRASNNAVADLVPVDVVINTTLAAAWY 291
|
|
| UNIPROTKB|F1SGA0 FAR2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 477 (173.0 bits), Expect = 2.3e-62, Sum P(2) = 2.3e-62
Identities = 92/240 (38%), Positives = 138/240 (57%)
Query: 121 ITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHI 180
+ RV+ N +F++++ CPN +K+ + L F +S D + L+S T IIFH
Sbjct: 52 LQQRVFQILNSKLFEKVKEVCPNVHEKIRAISADLNQSDFAISKEDMQELLSYTNIIFHC 111
Query: 181 AATVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPV 240
AATVRFD+H+R A +NV TQ +L +A +M L++F+H+STA+ NC+ K I E YP
Sbjct: 112 AATVRFDDHLRHAVQLNVTATQQLLLMASQMPKLEAFIHISTAFSNCNLKHIDEVIYPCP 171
Query: 241 FTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVGHELPICVLRPSI 300
+++ + D I + +IG +PN+YT TKA E +V+Q + I ++RPSI
Sbjct: 172 VEPKKIIDSMEWLDDAIIDEITPKLIGDRPNTYTYTKALGEMVVQQESGNINIAIIRPSI 231
Query: 301 VFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWY 360
V T QEP P W+ NG L + AG G +R V+ P D++P D V+N A+ WY
Sbjct: 232 VGATWQEPFPGWVDNLNGPSGLIIAAGKGFLRCVRATPMAVADLIPADTVVNLTLAVGWY 291
|
|
| MGI|MGI:1914670 Far1 "fatty acyl CoA reductase 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 476 (172.6 bits), Expect = 2.9e-62, Sum P(2) = 2.9e-62
Identities = 96/237 (40%), Positives = 144/237 (60%)
Query: 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAAT 183
RV + +FDR+R E P++ +K+ + +L LS D+E++I T +IFH AAT
Sbjct: 55 RVEEILSSKLFDRLRDENPDFREKIIAINSELTQPKLALSEEDKEIIIDSTNVIFHCAAT 114
Query: 184 VRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTA 243
VRF+E++R A +NV T+ ++ LA++MK L+ F+HVSTAY C+RK I E YPP
Sbjct: 115 VRFNENLRDAVQLNVIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDP 174
Query: 244 EELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVGHELPICVLRPSIVFP 303
++L + D + + +IG +PN+Y TKA AE +V+Q G +L + ++RPSIV
Sbjct: 175 KKLIDSLEWMDDGLVNDITPKLIGDRPNTYIYTKALAEYVVQQEGAKLNVAIVRPSIVGA 234
Query: 304 TLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWY 360
+ +EP P WI FNG L + AG G++R ++ N D+VP D V+N A AWY
Sbjct: 235 SWKEPFPGWIDNFNGPSGLFIAAGKGILRTMRASNNALADLVPVDVVVNTSLAAAWY 291
|
|
| UNIPROTKB|E9PNW8 FAR1 "Fatty acyl-CoA reductase 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 476 (172.6 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 97/237 (40%), Positives = 144/237 (60%)
Query: 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAAT 183
RV + +FDR+R E P++ +K+ + +L LS D+E++I T IIFH AAT
Sbjct: 55 RVEEVLSGKLFDRLRDENPDFREKIIAINSELTQPKLALSEEDKEVIIDSTNIIFHCAAT 114
Query: 184 VRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTA 243
VRF+E++R A +NV T+ ++ LA++MK L+ F+HVSTAY C+RK I E YPP
Sbjct: 115 VRFNENLRDAVQLNVIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDP 174
Query: 244 EELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVGHELPICVLRPSIVFP 303
++L + D + + +IG +PN+Y TKA AE +V+Q G +L + ++RPSIV
Sbjct: 175 KKLIDSLEWMDDGLVNDITPKLIGDRPNTYIYTKALAEYVVQQEGAKLNVAIVRPSIVGA 234
Query: 304 TLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWY 360
+ +EP P WI FNG L + AG G++R ++ N D+VP D V+N A AWY
Sbjct: 235 SWKEPFPGWIDNFNGPSGLFIAAGKGILRTIRASNNALADLVPVDVVVNMSLAAAWY 291
|
|
| UNIPROTKB|Q8WVX9 FAR1 "Fatty acyl-CoA reductase 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 476 (172.6 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 97/237 (40%), Positives = 144/237 (60%)
Query: 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAAT 183
RV + +FDR+R E P++ +K+ + +L LS D+E++I T IIFH AAT
Sbjct: 55 RVEEVLSGKLFDRLRDENPDFREKIIAINSELTQPKLALSEEDKEVIIDSTNIIFHCAAT 114
Query: 184 VRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTA 243
VRF+E++R A +NV T+ ++ LA++MK L+ F+HVSTAY C+RK I E YPP
Sbjct: 115 VRFNENLRDAVQLNVIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDP 174
Query: 244 EELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVGHELPICVLRPSIVFP 303
++L + D + + +IG +PN+Y TKA AE +V+Q G +L + ++RPSIV
Sbjct: 175 KKLIDSLEWMDDGLVNDITPKLIGDRPNTYIYTKALAEYVVQQEGAKLNVAIVRPSIVGA 234
Query: 304 TLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWY 360
+ +EP P WI FNG L + AG G++R ++ N D+VP D V+N A AWY
Sbjct: 235 SWKEPFPGWIDNFNGPSGLFIAAGKGILRTIRASNNALADLVPVDVVVNMSLAAAWY 291
|
|
| UNIPROTKB|A5PJQ0 FAR1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 474 (171.9 bits), Expect = 7.8e-62, Sum P(2) = 7.8e-62
Identities = 97/237 (40%), Positives = 144/237 (60%)
Query: 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAAT 183
RV + +FDR+R E P++ +K+ + +L LS D+E++I T IIFH AAT
Sbjct: 55 RVEEVISGKLFDRLRDENPDFREKIIAINSELTQPKLALSEEDKEIIIDSTNIIFHCAAT 114
Query: 184 VRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTA 243
VRF+E++R A +NV T+ ++ LA++MK L+ F+HVSTAY C+RK I E YPP
Sbjct: 115 VRFNENLRDAVQLNVIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDP 174
Query: 244 EELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVGHELPICVLRPSIVFP 303
++L + D + + +IG +PN+Y TKA AE +V+Q G +L + ++RPSIV
Sbjct: 175 KKLIDSLEWMDDGLVNDITPKLIGDRPNTYIYTKALAEYVVQQEGAKLNVVIVRPSIVGA 234
Query: 304 TLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWY 360
+ +EP P WI FNG L + AG G++R ++ N D+VP D V+N A AWY
Sbjct: 235 SWKEPFPGWIDNFNGPSGLFIAAGKGILRTMRASNNALADLVPVDVVVNMSLAAAWY 291
|
|
| RGD|1306647 Far1 "fatty acyl CoA reductase 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 473 (171.6 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
Identities = 96/237 (40%), Positives = 143/237 (60%)
Query: 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAAT 183
RV + +FDR+R E P++ K+ + +L LS D+E++I T +IFH AAT
Sbjct: 55 RVEEILSGKLFDRLRDENPDFRQKIIAINSELTQPKLALSEEDKEIIIDSTNVIFHCAAT 114
Query: 184 VRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTA 243
VRF+E++R A +NV T+ ++ LA++MK L+ F+HVSTAY C+RK I E YPP
Sbjct: 115 VRFNENLRDAVQLNVIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDP 174
Query: 244 EELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVGHELPICVLRPSIVFP 303
++L + D + + +IG +PN+Y TKA AE +V+Q G +L + ++RPSIV
Sbjct: 175 KKLIDSLEWMDDGLVNDITPKLIGDRPNTYIYTKALAEYVVQQEGAKLNVAIVRPSIVGA 234
Query: 304 TLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWY 360
+ +EP P WI FNG L + AG G++R ++ N D+VP D V+N A AWY
Sbjct: 235 SWKEPFPGWIDNFNGPSGLFIAAGKGILRTMRASNNALADLVPVDVVVNTSLAAAWY 291
|
|
| UNIPROTKB|Q66H50 Far1 "Fatty acyl-CoA reductase 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 473 (171.6 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
Identities = 96/237 (40%), Positives = 143/237 (60%)
Query: 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAAT 183
RV + +FDR+R E P++ K+ + +L LS D+E++I T +IFH AAT
Sbjct: 55 RVEEILSGKLFDRLRDENPDFRQKIIAINSELTQPKLALSEEDKEIIIDSTNVIFHCAAT 114
Query: 184 VRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTA 243
VRF+E++R A +NV T+ ++ LA++MK L+ F+HVSTAY C+RK I E YPP
Sbjct: 115 VRFNENLRDAVQLNVIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDP 174
Query: 244 EELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVGHELPICVLRPSIVFP 303
++L + D + + +IG +PN+Y TKA AE +V+Q G +L + ++RPSIV
Sbjct: 175 KKLIDSLEWMDDGLVNDITPKLIGDRPNTYIYTKALAEYVVQQEGAKLNVAIVRPSIVGA 234
Query: 304 TLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWY 360
+ +EP P WI FNG L + AG G++R ++ N D+VP D V+N A AWY
Sbjct: 235 SWKEPFPGWIDNFNGPSGLFIAAGKGILRTMRASNNALADLVPVDVVVNTSLAAAWY 291
|
|
| UNIPROTKB|E2R4R9 FAR1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 471 (170.9 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
Identities = 97/237 (40%), Positives = 143/237 (60%)
Query: 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAAT 183
RV + +FDR+R E P++ +KV + +L LS D+E++I IIFH AAT
Sbjct: 55 RVEEVISGKLFDRLRDENPDFREKVIAINSELTQPKLALSEEDKEIIIDSINIIFHCAAT 114
Query: 184 VRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTA 243
VRF+E++R A +NV T+ ++ LA++MK L+ F+HVSTAY C+RK I E YPP
Sbjct: 115 VRFNENLRDAVQLNVIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDP 174
Query: 244 EELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVGHELPICVLRPSIVFP 303
++L + D + + +IG +PN+Y TKA AE +V+Q G +L + ++RPSIV
Sbjct: 175 KKLIDSLEWMDDGLVNDITPKLIGDRPNTYIYTKALAEYVVQQEGAKLNVAIVRPSIVGA 234
Query: 304 TLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWY 360
+ +EP P WI FNG L + AG G++R ++ N D+VP D V+N A AWY
Sbjct: 235 SWKEPFPGWIDNFNGPSGLFIAAGKGILRTMRASNNALADLVPVDVVVNTSLAAAWY 291
|
|
| FB|FBgn0034145 CG5065 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 461 (167.3 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
Identities = 87/239 (36%), Positives = 139/239 (58%)
Query: 121 ITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHI 180
++ R+ N +F+ +R E P KV + G + ++ G+S +D+ LL +++FH
Sbjct: 167 VSARLTELLNAPLFESLRQEKPKELSKVIPISGDITSEELGISEKDQNLLCRNVSVVFHS 226
Query: 181 AATVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPV 240
AATV+FDE ++ + IN+ GT+ ++ L RM L + +HVSTAYCNCDR ++E Y P
Sbjct: 227 AATVKFDEKLKLSVTINMLGTKRLVELCHRMLSLDALIHVSTAYCNCDRTDVSEVIYAPP 286
Query: 241 FTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVGHELPICVLRPSI 300
+ +++ +L+ ++ + L +IG +PN+YT TKA AE ++ + LP+ ++RPSI
Sbjct: 287 YNPDDIISLINWLPEDILDQLTPRLIGKRPNTYTFTKALAEHMLLKEAGNLPVAIVRPSI 346
Query: 301 VFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAW 359
V +L EP W+ FNG L G+ R + + N D+VP D VIN M A AW
Sbjct: 347 VTASLNEPFAGWVDNFNGPTGLVSALAKGMFRTMMCEKNYVADMVPVDIVINLMIAAAW 405
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.1.1.103 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 366 | |||
| cd05236 | 320 | cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (F | 2e-99 | |
| pfam07993 | 245 | pfam07993, NAD_binding_4, Male sterility protein | 1e-69 | |
| PLN02996 | 491 | PLN02996, PLN02996, fatty acyl-CoA reductase | 8e-47 | |
| PLN02503 | 605 | PLN02503, PLN02503, fatty acyl-CoA reductase 2 | 6e-36 | |
| cd05235 | 290 | cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | 6e-24 | |
| cd05263 | 293 | cd05263, MupV_like_SDR_e, Pseudomonas fluorescens | 1e-19 | |
| COG3320 | 382 | COG3320, COG3320, Putative dehydrogenase domain of | 4e-17 | |
| TIGR01746 | 367 | TIGR01746, Thioester-redct, thioester reductase do | 2e-16 | |
| TIGR03443 | 1389 | TIGR03443, alpha_am_amid, L-aminoadipate-semialdeh | 7e-11 | |
| COG0451 | 314 | COG0451, WcaG, Nucleoside-diphosphate-sugar epimer | 8e-11 | |
| PRK07201 | 657 | PRK07201, PRK07201, short chain dehydrogenase; Pro | 4e-09 | |
| cd08946 | 200 | cd08946, SDR_e, extended (e) SDRs | 1e-08 | |
| cd05228 | 318 | cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr | 1e-06 | |
| pfam01370 | 233 | pfam01370, Epimerase, NAD dependent epimerase/dehy | 6e-06 | |
| cd05237 | 287 | cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-l | 4e-05 | |
| cd09813 | 335 | cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD | 1e-04 | |
| cd05246 | 315 | cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydra | 2e-04 | |
| COG1086 | 588 | COG1086, COG1086, Predicted nucleoside-diphosphate | 2e-04 | |
| pfam01073 | 280 | pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydr | 4e-04 | |
| cd05193 | 295 | cd05193, AR_like_SDR_e, aldehyde reductase, flavon | 7e-04 | |
| cd08946 | 200 | cd08946, SDR_e, extended (e) SDRs | 0.001 | |
| cd05228 | 318 | cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr | 0.001 | |
| cd05260 | 316 | cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase | 0.001 | |
| TIGR04180 | 297 | TIGR04180, EDH_00030, NAD dependent epimerase/dehy | 0.002 | |
| cd05252 | 336 | cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydrata | 0.002 | |
| COG1088 | 340 | COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cel | 0.004 | |
| cd05254 | 280 | cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4 | 0.004 |
| >gnl|CDD|187547 cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 296 bits (761), Expect = 2e-99
Identities = 134/313 (42%), Positives = 170/313 (54%), Gaps = 31/313 (9%)
Query: 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLE 109
++ ITGATGFLG +L+EKLLR CP I KI LLIR + S +R+ D +FDR R
Sbjct: 2 SVLITGATGFLGKVLLEKLLRSCPDIGKIYLLIRGKSGQSAEERLRELLKDKLFDRGR-- 59
Query: 110 CPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEEL 169
N P + K+ + G L GLS D +
Sbjct: 60 -----------------NLN------------PLFESKIVPIEGDLSEPNLGLSDEDLQT 90
Query: 170 LISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTAYCNCDR 229
LI + II H AATV FDE + A +INV GT +L LAKR K LK+FVHVSTAY N DR
Sbjct: 91 LIEEVNIIIHCAATVTFDERLDEALSINVLGTLRLLELAKRCKKLKAFVHVSTAYVNGDR 150
Query: 230 KFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVGH 289
+ I EK YPP E+L ++ D E+ ++GG PN+YT TKA AE LV +
Sbjct: 151 QLIEEKVYPPPADPEKLIDILELMDDLELERATPKLLGGHPNTYTFTKALAERLVLKERG 210
Query: 290 ELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDR 349
LP+ ++RPSIV TL+EP P WI FNG L L G G++R + DPN D++P D
Sbjct: 211 NLPLVIVRPSIVGATLKEPFPGWIDNFNGPDGLFLAYGKGILRTMNADPNAVADIIPVDV 270
Query: 350 VINAMAALAWYFL 362
V NA+ A A Y
Sbjct: 271 VANALLAAAAYSG 283
|
SDRs are Rossmann-fold NAD(P)H-binding proteins, many of which may function as fatty acyl CoA reductases (FAR), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. This N-terminal domain shares the catalytic triad (but not the upstream Asn) and characteristic NADP-binding motif of the extended SDR family. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 320 |
| >gnl|CDD|219687 pfam07993, NAD_binding_4, Male sterility protein | Back alignment and domain information |
|---|
Score = 218 bits (557), Expect = 1e-69
Identities = 98/304 (32%), Positives = 138/304 (45%), Gaps = 61/304 (20%)
Query: 53 ITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPN 112
+TGATGFLG +L+EKLLR P++ KI L+R + S +R+
Sbjct: 1 LTGATGFLGKVLLEKLLRSTPEV-KIYCLVRAKDGESALERLRQ---------------- 43
Query: 113 YADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS 172
+FDR++ +++ V G L GLS D + L
Sbjct: 44 --------------ELLKYGLFDRLK-----ALERIIPVAGDLSEPNLGLSDEDFQELAE 84
Query: 173 QTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTAYCNCDRKF- 231
+ +I H AATV F E NV GT+ +L LAK+MK F HVSTAY N +R
Sbjct: 85 EVDVIIHNAATVNFVEPYSDLRATNVLGTREVLRLAKQMK-KLPFHHVSTAYVNGERGGL 143
Query: 232 IAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVGHEL 291
+ EK ++ ++GG PN YT +K AE LVR+ L
Sbjct: 144 LEEK-------------------PYKLDEDEPALLGGLPNGYTQSKWLAEQLVREAAGGL 184
Query: 292 PICVLRPSIVFPTLQEPMPLWIKGFN-GVMALALGAGTGLIRVVQTDPNISMDVVPGDRV 350
P+ + RPSI+ E WI G + G L GAG G++ + DP+ +D+VP D V
Sbjct: 185 PVVIYRPSIITG---ESRTGWINGDDFGPRGLLGGAGLGVLPDILGDPDARLDLVPVDYV 241
Query: 351 INAM 354
NA+
Sbjct: 242 ANAI 245
|
This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included. Length = 245 |
| >gnl|CDD|215538 PLN02996, PLN02996, fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Score = 165 bits (420), Expect = 8e-47
Identities = 102/343 (29%), Positives = 157/343 (45%), Gaps = 54/343 (15%)
Query: 39 LSPIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYF 98
+F +++TI +TGATGFL + VEK+LR P ++K+ LL+R + S TQR
Sbjct: 2 EGSCVQFLENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQR----L 57
Query: 99 NDAVF--DRMRLECPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLE 156
+D V D ++ + ++ I+ +KV V G +
Sbjct: 58 HDEVIGKDLFKVLREKLGENLNSLIS-----------------------EKVTPVPGDIS 94
Query: 157 ADTFGLSARD-EELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALAKRMKGLK 215
D G+ + E + + I+ ++AAT FDE A IN G +L AK+ +K
Sbjct: 95 YDDLGVKDSNLREEMWKEIDIVVNLAATTNFDERYDVALGINTLGALNVLNFAKKCVKVK 154
Query: 216 SFVHVSTAY-CNCDRKFIAEKFYP----------------PVFTAEELSALVAH-ASDEE 257
+HVSTAY C I EK + E+L L AS+EE
Sbjct: 155 MLLHVSTAYVCGEKSGLILEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEE 214
Query: 258 IAL------LNEHIIGGKPNSYTLTKATAEDLVRQVGHELPICVLRPSIVFPTLQEPMPL 311
I + + G PN+Y TKA E L+ LP+ ++RP+++ T +EP P
Sbjct: 215 ITQAMKDLGMERAKLHGWPNTYVFTKAMGEMLLGNFKENLPLVIIRPTMITSTYKEPFPG 274
Query: 312 WIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAM 354
WI+G + ++ +G G G + DPN +DV+P D V+NAM
Sbjct: 275 WIEGLRTIDSVIVGYGKGKLTCFLADPNSVLDVIPADMVVNAM 317
|
Length = 491 |
| >gnl|CDD|215279 PLN02503, PLN02503, fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 6e-36
Identities = 102/357 (28%), Positives = 157/357 (43%), Gaps = 69/357 (19%)
Query: 42 IQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDA 101
I EF + + ITGATGFL +L+EK+LR P + KI LLI+ + + +R+ N DA
Sbjct: 113 IAEFLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDA 172
Query: 102 -VFDRMRLECPNYADKVDIGITHRV-YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADT 159
+F ++ TH Y F K+ V G +
Sbjct: 173 ELFKCLQE-------------THGKSYQSF--------------MLSKLVPVVGNVCESN 205
Query: 160 FGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVH 219
GL + + + +I + AA FDE A +IN +G +++ AK+ K LK F+
Sbjct: 206 LGLEPDLADEIAKEVDVIINSAANTTFDERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQ 265
Query: 220 VSTAYCNCDRK------------FIAEKFYPPVFTAEELSALVAHASDEEIAL------- 260
VSTAY N R+ IA + AL A EI L
Sbjct: 266 VSTAYVNGQRQGRIMEKPFRMGDCIARELGISNSLPHNRPALDIEA---EIKLALDSKRH 322
Query: 261 ---------------LNEHIIGGKPNSYTLTKATAEDLVRQVGHELPICVLRPSIVFPTL 305
L + G ++Y TKA E ++ + ++P+ ++RPS++ T
Sbjct: 323 GFQSNSFAQKMKDLGLERAKLYGWQDTYVFTKAMGEMVINSMRGDIPVVIIRPSVIESTW 382
Query: 306 QEPMPLWIKGFNGVM-ALALGAGTGLIRVVQTDPNISMDVVPGDRVINA-MAALAWY 360
++P P W++G N +M + L G G + DPN +DVVP D V+NA +AA+A +
Sbjct: 383 KDPFPGWMEG-NRMMDPIVLYYGKGQLTGFLADPNGVLDVVPADMVVNATLAAMAKH 438
|
Length = 605 |
| >gnl|CDD|187546 cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 6e-24
Identities = 70/258 (27%), Positives = 106/258 (41%), Gaps = 63/258 (24%)
Query: 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLE 109
T+ +TGATGFLG+ L+ +LL+ + KI L+R + + +R +
Sbjct: 1 TVLLTGATGFLGAYLLRELLKR-KNVSKIYCLVRAKDEEAALER------------LIDN 47
Query: 110 CPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEEL 169
Y + E ++ +V G L GLS D +
Sbjct: 48 LKEY--------------------GLNLWDE--LELSRIKVVVGDLSKPNLGLSDDDYQE 85
Query: 170 LISQTTIIFHIAATVRF---DEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTAYCN 226
L + +I H A V + E ++ A NV GT+ +L LA K LK VST
Sbjct: 86 LAEEVDVIIHNGANVNWVYPYEELKPA---NVLGTKELLKLAATGK-LKPLHFVSTLS-- 139
Query: 227 CDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQ 286
VF+AEE +AL SD+ + N G PN Y +K AE L+R+
Sbjct: 140 -------------VFSAEEYNALDDEESDDMLESQN-----GLPNGYIQSKWVAEKLLRE 181
Query: 287 VGHE-LPICVLRPSIVFP 303
+ LP+ ++RP +F
Sbjct: 182 AANRGLPVAIIRPGNIFG 199
|
This family consists of an SDR module of multidomain proteins identified as putative polyketide sythases fatty acid synthases (FAS), and nonribosomal peptide synthases, among others. However, unlike the usual ketoreductase modules of FAS and polyketide synthase, these domains are related to the extended SDRs, and have canonical NAD(P)-binding motifs and an active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 290 |
| >gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 1e-19
Identities = 74/309 (23%), Positives = 116/309 (37%), Gaps = 77/309 (24%)
Query: 51 IFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLEC 110
+F+TG TGFLG LV++LL K+++L+R+
Sbjct: 1 VFVTGGTGFLGRHLVKRLL---ENGFKVLVLVRSE------------------------- 32
Query: 111 PNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELL 170
+ E AD+V ++ G L GLSA L
Sbjct: 33 -------------------SLGEAHERIEEAGLEADRVRVLEGDLTQPNLGLSAAASREL 73
Query: 171 ISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTAYCNCDRK 230
+ + H AA+ F A+ N+ GT+ +L LA R ++ F +VSTAY +R
Sbjct: 74 AGKVDHVIHCAASYDFQAPNEDAWRTNIDGTEHVLELAAR-LDIQRFHYVSTAYVAGNR- 131
Query: 231 FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVGHE 290
EL + N Y +KA AE LVR +
Sbjct: 132 -------EGNIRETEL--------NPGQNFKNP---------YEQSKAEAEQLVRAAATQ 167
Query: 291 LPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALG-AGTGLIRVVQTDPNISMDVVPGDR 349
+P+ V RPSIV + + I+ +G+ L A G + + +++VP D
Sbjct: 168 IPLTVYRPSIV---VGDSKTGRIEKIDGLYELLNLLAKLGRWLPMPGNKGARLNLVPVDY 224
Query: 350 VINAMAALA 358
V +A+ L+
Sbjct: 225 VADAIVYLS 233
|
This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|225857 COG3320, COG3320, Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 4e-17
Identities = 65/250 (26%), Positives = 92/250 (36%), Gaps = 58/250 (23%)
Query: 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLE 109
+ +TGATGFLG+ L+ +LL K+I L+R + ++A R+
Sbjct: 2 NVLLTGATGFLGAYLLLELLDRSD--AKVICLVRAQS------------DEAALARLEKT 47
Query: 110 CPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEEL 169
Y R ++ AD+V++V G L GLS R +
Sbjct: 48 FDLY----------RHWDEL--------------SADRVEVVAGDLAEPDLGLSERTWQE 83
Query: 170 LISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTAYCNCDR 229
L +I H AA V NV GT +L LA K K +VS+
Sbjct: 84 LAENVDLIIHNAALVNHVFPYSELRGANVLGTAEVLRLAATGKP-KPLHYVSS------- 135
Query: 230 KFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQ-VG 288
I+ V E S DE N + G Y +K AE LVR+
Sbjct: 136 --IS------VGETEYYSNFTV-DFDEISPTRN--VGQGLAGGYGRSKWVAEKLVREAGD 184
Query: 289 HELPICVLRP 298
LP+ + RP
Sbjct: 185 RGLPVTIFRP 194
|
Length = 382 |
| >gnl|CDD|233557 TIGR01746, Thioester-redct, thioester reductase domain | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 2e-16
Identities = 78/319 (24%), Positives = 121/319 (37%), Gaps = 83/319 (26%)
Query: 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAV-FDRMRL 108
T+ +TGATGFLG+ L+E+LLR Q K+I L+R ++ +R+R
Sbjct: 1 TVLLTGATGFLGAYLLEELLRRSTQA-KVICLVRAA-------------SEEHAMERLRE 46
Query: 109 ECPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYA-DKVDIVCGQLEADTFGLSARDE 167
+Y RL + A +++++V G L GLS +
Sbjct: 47 ALRSY------------------------RLWHEDLARERIEVVAGDLSEPRLGLSDAEW 82
Query: 168 ELLISQTTIIFHIAATVRF---DEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTAY 224
E L I H A V + +R A NV GT+ +L LA + K +VST
Sbjct: 83 ERLAENVDTIVHNGALVNWVYPYSELRGA---NVLGTREVLRLAASGRA-KPLHYVSTI- 137
Query: 225 CNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLV 284
V A +LS + E+ A + G Y +K AE LV
Sbjct: 138 --------------SVGAAIDLSTVT-----EDDATVTPPP--GLAGGYAQSKWVAELLV 176
Query: 285 RQVGHE-LPICVLRPSIVFPTLQ----EPMPLWIKGFNGVMALALGAGTGLIRVVQTDPN 339
R+ LP+ ++RP + + + G +AL P
Sbjct: 177 REASDRGLPVTIVRPGRILGNSYTGAINSSDILWRMVKGCLAL---------GAYPQSPE 227
Query: 340 ISMDVVPGDRVINAMAALA 358
++ D+ P D V A+ L+
Sbjct: 228 LTEDLTPVDFVARAIVVLS 246
|
This model includes the terminal domain from the fungal alpha aminoadipate reductase enzyme (also known as aminoadipate semialdehyde dehydrogenase) which is involved in the biosynthesis of lysine , as well as the reductase-containing component of the myxochelin biosynthetic gene cluster, MxcG. The mechanism of reduction involves activation of the substrate by adenylation and transfer to a covalently-linked pantetheine cofactor as a thioester. This thioester is then reduced to give an aldehyde (thus releasing the product) and a regenerated pantetheine thiol. (In myxochelin biosynthesis this aldehyde is further reduced to an alcohol or converted to an amine by an aminotransferase.) This is a fundamentally different reaction than beta-ketoreductase domains of polyketide synthases which act at a carbonyl two carbons removed from the thioester and forms an alcohol as a product. This domain is invariably found at the C-terminus of the proteins which contain it (presumably because it results in the release of the product). The majority of hits to this model are non-ribosomal peptide synthetases in which this domain is similarly located proximal to a thiolation domain (pfam00550). In some cases this domain is found at the end of a polyketide synthetase enzyme, but is unlike ketoreductase domains which are found before the thiolase domains. Exceptions to this observed relationship with the thiolase domain include three proteins which consist of stand-alone reductase domains (GP|466833 from M. leprae, GP|435954 from Anabaena and OMNI|NTL02SC1199 from Strep. coelicolor) and one protein (OMNI|NTL01NS2636 from Nostoc) which contains N-terminal homology with a small group of hypothetical proteins but no evidence of a thiolation domain next to the putative reductase domain. Below the noise cutoff to this model are proteins containing more distantly related ketoreductase and dehydratase/epimerase domains. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. Length = 367 |
| >gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 7e-11
Identities = 62/261 (23%), Positives = 101/261 (38%), Gaps = 57/261 (21%)
Query: 47 KDQTIFITGATGFLGSLLVEKLL-RCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDR 105
T+F+TGATGFLGS ++ LL R K+ +R + +A +R
Sbjct: 970 TPITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSE------------EAGLER 1017
Query: 106 MRLECPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSAR 165
+R Y +++ +A ++++V G L + FGLS
Sbjct: 1018 LRKTG-------------TTYGIWDE-----------EWASRIEVVLGDLSKEKFGLSDE 1053
Query: 166 DEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHV-STAY 224
L ++ +I H A V + + NV GT +L L K K F V ST+
Sbjct: 1054 KWSDLTNEVDVIIHNGALVHWVYPYSKLRDANVIGTINVLNLCAEGKA-KQFSFVSSTSA 1112
Query: 225 CNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG---GKPNSYTLTKATAE 281
+ + LS + A I ++ ++G G Y +K AE
Sbjct: 1113 LDTEYYV-------------NLSDELVQAGGAGI-PESDDLMGSSKGLGTGYGQSKWVAE 1158
Query: 282 DLVRQVGHE-LPICVLRPSIV 301
++R+ G L C++RP V
Sbjct: 1159 YIIREAGKRGLRGCIVRPGYV 1179
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. Length = 1389 |
| >gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.3 bits (151), Expect = 8e-11
Identities = 67/319 (21%), Positives = 96/319 (30%), Gaps = 106/319 (33%)
Query: 51 IFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLEC 110
I +TG GF+GS LVE+LL G
Sbjct: 3 ILVTGGAGFIGSHLVERLLA--------------AG------------------------ 24
Query: 111 PNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELL 170
H V DR+R V+ V L +EL
Sbjct: 25 ------------HDVR------GLDRLRDGLDPLLSGVEFVVLDLTDRDL-----VDELA 61
Query: 171 ISQTTIIFHIAATVRF----DEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTA--- 223
+ H+AA ++NV GT +L A+ G+K FV S+
Sbjct: 62 KGVPDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAA-GVKRFVFASSVSVV 120
Query: 224 YCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDL 283
Y + I E PP N Y ++K AE L
Sbjct: 121 YGDPPPLPIDEDLGPPRPL----------------------------NPYGVSKLAAEQL 152
Query: 284 VRQVGHE--LPICVLRPSIVF-PTLQEPMPLWIKGFNGVMALALGAGTGL-IRVVQTDPN 339
+R LP+ +LRP V+ P + + + V A G I V+ D +
Sbjct: 153 LRAYARLYGLPVVILRPFNVYGPGDKPDLSSGV-----VSAFIRQLLKGEPIIVIGGDGS 207
Query: 340 ISMDVVPGDRVINAMAALA 358
+ D V D V +A+
Sbjct: 208 QTRDFVYVDDVADALLLAL 226
|
Length = 314 |
| >gnl|CDD|235962 PRK07201, PRK07201, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 4e-09
Identities = 77/334 (23%), Positives = 111/334 (33%), Gaps = 124/334 (37%)
Query: 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLE 109
F+TG TGF+G LV +LL + + +L+R R S S + + Y+
Sbjct: 2 RYFVTGGTGFIGRRLVSRLLDRRREAT-VHVLVR-RQSLSRLEALAAYWG---------- 49
Query: 110 CPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEEL 169
AD+V + G L GLS D
Sbjct: 50 -----------------------------------ADRVVPLVGDLTEPGLGLSEADIAE 74
Query: 170 LISQTTIIFHIAA----TVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTAYC 225
L + H+AA T + NV GT+ ++ LA+R++ +F HVS+
Sbjct: 75 L-GDIDHVVHLAAIYDLTADEEAQRAA----NVDGTRNVVELAERLQA-ATFHHVSS--- 125
Query: 226 NCDRKFIA-EKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLV 284
IA Y VF E+ + + P Y TK AE LV
Sbjct: 126 ------IAVAGDYEGVFR-------------EDDFDEGQGL----PTPYHRTKFEAEKLV 162
Query: 285 RQVGHELPICVLRPSIV------------------FPTLQ--EPMPLWIKGFNGVMALAL 324
R+ LP V RP++V F L +P W+ +
Sbjct: 163 REEC-GLPWRVYRPAVVVGDSRTGEMDKIDGPYYFFKVLAKLAKLPSWLP--------MV 213
Query: 325 GAGTGLIRVVQTDPNISMDVVPGDRVINAMAALA 358
G G NI VP D V +A+ L
Sbjct: 214 GPDGGRT-------NI----VPVDYVADALDHLM 236
|
Length = 657 |
| >gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 1e-08
Identities = 42/197 (21%), Positives = 72/197 (36%), Gaps = 54/197 (27%)
Query: 175 TIIFHIAATVRFDEHIRTA---YNINVKGTQTILALAKRMKGLKSFVHVSTA--YCNCDR 229
++ H+AA V + NV GT +L A++ G+K FV+ S+A Y + +
Sbjct: 32 DVVVHLAALVGVPASWDNPDEDFETNVVGTLNLLEAARKA-GVKRFVYASSASVYGSPEG 90
Query: 230 KFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNS-YTLTKATAEDLVRQVG 288
E+ P +P S Y ++K AE L+R G
Sbjct: 91 LPEEEETPP------------------------------RPLSPYGVSKLAAEHLLRSYG 120
Query: 289 --HELPICVLRPSIVF-----PTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNIS 341
+ LP+ +LR + V+ P L + +I+ L + N +
Sbjct: 121 ESYGLPVVILRLANVYGPGQRPRLDGVVNDFIRRALEGKPLTVFG----------GGNQT 170
Query: 342 MDVVPGDRVINAMAALA 358
D + D V+ A+
Sbjct: 171 RDFIHVDDVVRAILHAL 187
|
Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200 |
| >gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 41/169 (24%), Positives = 58/169 (34%), Gaps = 41/169 (24%)
Query: 176 IIFHIAATVRF-DEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTAYCNCDRKFIAE 234
+FH+AA + + Y NV+GT+ +L A G++ VH S+ IA
Sbjct: 65 RVFHLAAFTSLWAKDRKELYRTNVEGTRNVLDAALE-AGVRRVVHTSS---------IA- 113
Query: 235 KFYPPVFTAEELSALVAH---ASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQ-VGHE 290
AL DE PN Y +K AE V +
Sbjct: 114 -------------ALGGPPDGRIDET----TPWNERPFPNDYYRSKLLAELEVLEAAAEG 156
Query: 291 LPICVLRPSIVF------PTLQEPMPLWIKGFNGVMALALGAGTGLIRV 333
L + ++ PS VF PT L NG + GT + V
Sbjct: 157 LDVVIVNPSAVFGPGDEGPTSTGLDVLDY--LNGKLPAYPPGGTSFVDV 203
|
This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318 |
| >gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 6e-06
Identities = 51/259 (19%), Positives = 74/259 (28%), Gaps = 97/259 (37%)
Query: 51 IFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLEC 110
I +TG TGF+GS LV +LL+ I+L R R + T R+ R
Sbjct: 1 ILVTGGTGFIGSHLVRRLLQ--EGYEVIVLGRRRRSESLNTGRI------------RFHE 46
Query: 111 PNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELL 170
+ D + + + + D V
Sbjct: 47 GDLTDPDAL-----------ERLLAE---------VQPDAV------------------- 67
Query: 171 ISQTTIIFHIAATVRFDEHIRTA---YNINVKGTQTILALAKRMKGLKSFVHVSTA--YC 225
H+AA NV GT +L A+R G+K FV S++ Y
Sbjct: 68 -------IHLAAQSGVGASFEDPADFIRANVLGTLRLLEAARRA-GVKRFVFASSSEVYG 119
Query: 226 NCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVR 285
+ I E G + Y K AE LV
Sbjct: 120 DVADPPITEDTPL-----------------------------GPLSPYAAAKLAAERLVE 150
Query: 286 QVG--HELPICVLRPSIVF 302
+ L +LR V+
Sbjct: 151 AYARAYGLRAVILRLFNVY 169
|
This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233 |
| >gnl|CDD|187548 cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 4e-05
Identities = 40/179 (22%), Positives = 62/179 (34%), Gaps = 54/179 (30%)
Query: 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRM 106
K +TI +TG G +GS LV ++L+ P +K+I+ R + + +
Sbjct: 1 KGKTILVTGGAGSIGSELVRQILKFGP--KKLIVF--DRDENKLHE-------------L 43
Query: 107 RLECPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARD 166
E + + + V D+ RL DIV
Sbjct: 44 VRELRSRFPHDKLR-------FIIGDVRDKERLRRAFKERGPDIV--------------- 81
Query: 167 EELLISQTTIIFHIAAT--VRFDEHIRT-AYNINVKGTQTILALAKRMKGLKSFVHVST 222
FH AA V E A NV GT+ ++ A G++ FV +ST
Sbjct: 82 -----------FHAAALKHVPSMEDNPEEAIKTNVLGTKNVIDAA-IENGVEKFVCIST 128
|
UDP-Glcnac inverting 4,6-dehydratase was identified in Helicobacter pylori as the hexameric flaA1 gene product (FlaA1). FlaA1 is hexameric, possesses UDP-GlcNAc-inverting 4,6-dehydratase activity, and catalyzes the first step in the creation of a pseudaminic acid derivative in protein glycosylation. Although this subgroup has the NADP-binding motif characteristic of extended SDRs, its members tend to have a Met substituted for the active site Tyr found in most SDR families. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 287 |
| >gnl|CDD|187673 cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD(P)H steroid dehydrogenase-like protein)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 64/286 (22%), Positives = 107/286 (37%), Gaps = 88/286 (30%)
Query: 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLE 109
+ + G +GFLG LVE+LLR RG+ ++ VFD
Sbjct: 1 SCLVVGGSGFLGRHLVEQLLR--------------RGNPTV----------HVFD----- 31
Query: 110 CPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEEL 169
I T + + + R++ + D D+ A +E
Sbjct: 32 ---------IRPTFEL----DPSSSGRVQFHTGDLTDPQDLE-----------KAFNE-- 65
Query: 170 LISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTAYCNCDR 229
++FH A+ + Y +NV+GT+ ++ A R G+K V+ S+A
Sbjct: 66 --KGPNVVFHTASPDH-GSNDDLYYKVNVQGTRNVIE-ACRKCGVKKLVYTSSASV---- 117
Query: 230 KFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVGH 289
VF +++ DE + ++H ++Y TKA AE LV +
Sbjct: 118 ----------VFNGQDI-----INGDESLPYPDKHQ-----DAYNETKALAEKLVLKAND 157
Query: 290 ELP---ICVLRPSIVF-PTLQEPMPLWIKGF-NGVMALALGAGTGL 330
C LRP+ +F P ++ +P +K NG +G G L
Sbjct: 158 PESGLLTCALRPAGIFGPGDRQLVPGLLKAAKNGKTKFQIGDGNNL 203
|
This subgroup includes human NSDHL and related proteins. These proteins have the characteristic active site tetrad of extended SDRs, and also have a close match to their NAD(P)-binding motif. Human NSDHL is a 3beta-hydroxysteroid dehydrogenase (3 beta-HSD) which functions in the cholesterol biosynthetic pathway. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Mutations in the gene encoding NSDHL cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. This subgroup also includes an unusual bifunctional [3beta-hydroxysteroid dehydrogenase (3b-HSD)/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 335 |
| >gnl|CDD|187557 cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 2e-04
Identities = 46/169 (27%), Positives = 65/169 (38%), Gaps = 54/169 (31%)
Query: 165 RDEELLIS-----QTTIIFHIAATVRFD-------EHIRTAYNINVKGTQTILALAKRMK 212
D EL+ + + H AA D IRT NV GT T+L A++
Sbjct: 61 CDAELVDRLFEEEKIDAVIHFAAESHVDRSISDPEPFIRT----NVLGTYTLLEAARK-Y 115
Query: 213 GLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEEL--SALVAHASDEEIALLNEHIIGGKP 270
G+K FVH+ST +E+ L E L P
Sbjct: 116 GVKRFVHIST---------------------DEVYGDLLDDGEFTETSPL--------AP 146
Query: 271 NS-YTLTKATAEDLVR--QVGHELPICVLRPSIVFPTLQEP---MPLWI 313
S Y+ +KA A+ LVR + LP+ + R S + Q P +PL+I
Sbjct: 147 TSPYSASKAAADLLVRAYHRTYGLPVVITRCSNNYGPYQFPEKLIPLFI 195
|
This subgroup contains dTDP-D-glucose 4,6-dehydratase and related proteins, members of the extended-SDR family, with the characteristic Rossmann fold core region, active site tetrad and NAD(P)-binding motif. dTDP-D-glucose 4,6-dehydratase is closely related to other sugar epimerases of the SDR family. dTDP-D-dlucose 4,6,-dehydratase catalyzes the second of four steps in the dTDP-L-rhamnose pathway (the dehydration of dTDP-D-glucose to dTDP-4-keto-6-deoxy-D-glucose) in the synthesis of L-rhamnose, a cell wall component of some pathogenic bacteria. In many gram negative bacteria, L-rhamnose is an important constituent of lipopoylsaccharide O-antigen. The larger N-terminal portion of dTDP-D-Glucose 4,6-dehydratase forms a Rossmann fold NAD-binding domain, while the C-terminus binds the sugar substrate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 315 |
| >gnl|CDD|224011 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 46/191 (24%), Positives = 70/191 (36%), Gaps = 62/191 (32%)
Query: 39 LSPIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYF 98
I +T+ +TG G +GS L ++L+ P ++IIL +R + +
Sbjct: 241 TELIGAMLTGKTVLVTGGGGSIGSELCRQILKFNP--KEIILF--SRDEYKLYL-IDMEL 295
Query: 99 NDAVFDRMRLECPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEAD 158
+ + P + IG V DR R+E KVDIV
Sbjct: 296 RE--------KFPELKLRFYIG-----------DVRDRDRVERAMEGHKVDIV------- 329
Query: 159 TFGLSARDEELLISQTTIIFHIAA-----TVRF--DEHIRTAYNINVKGTQTILALAKRM 211
FH AA V + +E I+T NV GT+ + A +
Sbjct: 330 -------------------FHAAALKHVPLVEYNPEEAIKT----NVLGTENVAEAAIK- 365
Query: 212 KGLKSFVHVST 222
G+K FV +ST
Sbjct: 366 NGVKKFVLIST 376
|
Length = 588 |
| >gnl|CDD|216283 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase family | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 4e-04
Identities = 33/136 (24%), Positives = 51/136 (37%), Gaps = 31/136 (22%)
Query: 176 IIFHIAATVRFDEHIR--TAYNINVKGTQTILALAKRMKGLKSFVHVSTAYCNCDRKFIA 233
++ H AA + T +NVKGTQ +L A G++ V+ S+ +
Sbjct: 69 VVIHTAAIIDVFGKAYRDTIMKVNVKGTQNVLD-ACVKAGVRVLVYTSSM----EVVG-- 121
Query: 234 EKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLV-------RQ 286
P + + DE + H + Y +KA AE LV +
Sbjct: 122 -----PNSYGQPI-----VNGDETTPYESTH-----QDPYPESKALAEKLVLKANGSTLK 166
Query: 287 VGHELPICVLRPSIVF 302
G L C LRP+ +F
Sbjct: 167 NGGRLYTCALRPAGIF 182
|
The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyzes the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. Length = 280 |
| >gnl|CDD|187536 cd05193, AR_like_SDR_e, aldehyde reductase, flavonoid reductase, and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 7e-04
Identities = 43/209 (20%), Positives = 62/209 (29%), Gaps = 37/209 (17%)
Query: 145 ADKVDIVCGQLE-------ADTFGLSARDE---ELLISQTTIIFHIAATVRF-----DEH 189
KV V L+ + DE + +I +FH+A V F +E
Sbjct: 32 PSKVKKVNHLLDLDAKPGRLELAVADLTDEQSFDEVIKGCAGVFHVATPVSFSSKDPNEV 91
Query: 190 IRTAYNINVKGTQTILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSAL 249
I+ + GT L A K +K FV S+A K E +E S
Sbjct: 92 IKP----AIGGTLNALKAAAAAKSVKRFVLTSSAGSVLIPKPNVEGIV-----LDEKS-- 140
Query: 250 VAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVGHEL----PICVLRPSI---VF 302
+ EE + S TL + A + +L P +
Sbjct: 141 ---WNLEEFDSDPKKSAWVYAASKTLAEKAAWKFADENNIDLITVIPTLTIGTIFDSETP 197
Query: 303 PTLQEPMPLWIKGFNGVMALALGAGTGLI 331
+ M L I G GV G
Sbjct: 198 SSSGWAMSL-ITGNEGVSPALALIPPGYY 225
|
This subgroup contains aldehyde reductase and flavonoid reductase of the extended SDR-type and related proteins. Proteins in this subgroup have a complete SDR-type active site tetrad and a close match to the canonical extended SDR NADP-binding motif. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 295 |
| >gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.001
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 51 IFITGATGFLGSLLVEKLLR 70
I +TG GF+GS LV +LL
Sbjct: 1 ILVTGGAGFIGSHLVRRLLE 20
|
Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200 |
| >gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.001
Identities = 14/20 (70%), Positives = 15/20 (75%)
Query: 51 IFITGATGFLGSLLVEKLLR 70
I +TGATGFLGS LV LL
Sbjct: 1 ILVTGATGFLGSNLVRALLA 20
|
This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318 |
| >gnl|CDD|187570 cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.001
Identities = 44/199 (22%), Positives = 64/199 (32%), Gaps = 63/199 (31%)
Query: 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLE 109
ITG TG GS L E LL + ++ ++R S + + + Y N DR+ L
Sbjct: 1 RALITGITGQDGSYLAEFLLE---KGYEVHGIVRRSSSFNTDRIDHLYINK---DRITLH 54
Query: 110 CPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEEL 169
Y D D R
Sbjct: 55 ---YGDLTDSSSLRRAIE------------------------------------------ 69
Query: 170 LISQTTIIFHIAA----TVRFDEHIRTAYNINVKGTQTILALAKRMKGLKS-FVHVSTA- 223
+ I+H+AA V FD+ T +N GT +L A R+ GL + F S++
Sbjct: 70 -KVRPDEIYHLAAQSHVKVSFDDPEYT-AEVNAVGTLNLLE-AIRILGLDARFYQASSSE 126
Query: 224 -YCNCDRKFIAEK--FYPP 239
Y +E F P
Sbjct: 127 EYGKVQELPQSETTPFRPR 145
|
GDP-mannose 4,6 dehydratase, a homodimeric SDR, catalyzes the NADP(H)-dependent conversion of GDP-(D)-mannose to GDP-4-keto, 6-deoxy-(D)-mannose in the fucose biosynthesis pathway. These proteins have the canonical active site triad and NAD-binding pattern, however the active site Asn is often missing and may be substituted with Asp. A Glu residue has been identified as an important active site base. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|200431 TIGR04180, EDH_00030, NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 42/176 (23%), Positives = 69/176 (39%), Gaps = 59/176 (33%)
Query: 51 IFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLEC 110
+ +TGA GF+GS LVE L+R ++R +L YN FN
Sbjct: 1 VLVTGADGFIGSHLVEALVRQGYEVRAFVL--------------YNSFNSW--------- 37
Query: 111 PNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQL-EADTFGLSARDEEL 169
+ D P DK+++V G + + D+ + + +
Sbjct: 38 -GWLDTS-----------------------PPEVKDKIEVVTGDIRDPDSVRKAMKGCD- 72
Query: 170 LISQTTIIFHIAATVR--FDEHIRTAY-NINVKGTQTILALAKRMKGLKSFVHVST 222
++FH+AA + + +Y + NV GT +L A R G++ VH ST
Sbjct: 73 ------VVFHLAALIAIPYSYIAPDSYVDTNVTGTLNVLQ-AARDLGVEKVVHTST 121
|
This clade within the NAD dependent epimerase/dehydratase superfamily (pfam01370) is characterized by inclusion of its members within a cassette of seven distinctive enzymes. These include four genes homologous to the elements of the neuraminic (sialic) acid biosynthesis cluster (NeuABCD), an aminotransferase and a nucleotidyltransferase in addition to the epimerase/dehydratase. Together it is very likely that these enzymes direct the biosynthesis of a nine-carbon sugar analagous to CMP-neuraminic acid. These seven genes form the core of the cassette, although they are often accompanied by additional genes that may further modify the product sugar. Although this cassette is widely distributed in bacteria, the family nomenclature arises from the instance in Leptospira interrogans serovar Lai, str. 56601, where it appears as the 30th gene in the 91-gene lipopolysaccharide biosynthesis cluster. Length = 297 |
| >gnl|CDD|187562 cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 13/93 (13%)
Query: 142 PNYADKVDIVCGQLEADTFGLSARDEELLI-----SQTTIIFHIAAT--VR--FDEHIRT 192
PN + ++ + T G RD L + I+FH+AA VR + + + T
Sbjct: 42 PNLFELANL--DNKISSTRG-DIRDLNALREAIREYEPEIVFHLAAQPLVRLSYKDPVET 98
Query: 193 AYNINVKGTQTILALAKRMKGLKSFVHVSTAYC 225
+ NV GT +L + +K+ V+V++ C
Sbjct: 99 -FETNVMGTVNLLEAIRETGSVKAVVNVTSDKC 130
|
This subgroup contains CDP-D-glucose 4,6-dehydratase, an extended SDR, which catalyzes the conversion of CDP-D-glucose to CDP-4-keto-6-deoxy-D-glucose. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 336 |
| >gnl|CDD|224013 COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.004
Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 33/113 (29%)
Query: 190 IRTAYNINVKGTQTILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSAL 249
I+T NV GT T+L A++ G F H+ST D + FT E +
Sbjct: 98 IQT----NVVGTYTLLEAARKYWGKFRFHHIST-----DEVYGDLGLDDDAFT--ETTPY 146
Query: 250 VAHASDEEIALLNEHIIGGKPNS-YTLTKATAEDLVRQVGHE--LPICVLRPS 299
P+S Y+ +KA ++ LVR LP + R S
Sbjct: 147 -------------------NPSSPYSASKAASDLLVRAYVRTYGLPATITRCS 180
|
Length = 340 |
| >gnl|CDD|187564 cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4-hexulose reductase and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.004
Identities = 34/165 (20%), Positives = 54/165 (32%), Gaps = 40/165 (24%)
Query: 150 IVCGQLEADTFGLSARDEELLIS-----QTTIIFHIAATVRFDE---HIRTAYNINVKGT 201
I G+ A F L D + + + +I + AA R D+ AY +NV
Sbjct: 27 IGTGRSRASLFKLDLTDPDAVEEAIRDYKPDVIINCAAYTRVDKCESDPELAYRVNVLAP 86
Query: 202 QTILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALL 261
+ + AK + +H+ST Y VF ++ D L
Sbjct: 87 ENLARAAKEVGAR--LIHISTDY---------------VFDGKKGP---YKEEDAPNPL- 125
Query: 262 NEHIIGGKPNSYTLTKATAEDLVRQVGHELPICVLRPSIVFPTLQ 306
N Y +K E V +LR S ++ L+
Sbjct: 126 ---------NVYGKSKLLGEVAVLN--ANPRYLILRTSWLYGELK 159
|
dTDP-6-deoxy-L-lyxo-4-hexulose reductase, an extended SDR, synthesizes dTDP-L-rhamnose from alpha-D-glucose-1-phosphate, providing the precursor of L-rhamnose, an essential cell wall component of many pathogenic bacteria. This subgroup has the characteristic active site tetrad and NADP-binding motif. This subgroup also contains human MAT2B, the regulatory subunit of methionine adenosyltransferase (MAT); MAT catalyzes S-adenosylmethionine synthesis. The human gene encoding MAT2B encodes two major splicing variants which are induced in human cell liver cancer and regulate HuR, an mRNA-binding protein which stabilizes the mRNA of several cyclins, to affect cell proliferation. Both MAT2B variants include this extended SDR domain. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 280 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 366 | |||
| PLN02996 | 491 | fatty acyl-CoA reductase | 100.0 | |
| KOG1221|consensus | 467 | 100.0 | ||
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 100.0 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 99.97 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 99.97 | |
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 99.97 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 99.96 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 99.96 | |
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 99.96 | |
| KOG1502|consensus | 327 | 99.96 | ||
| PLN02427 | 386 | UDP-apiose/xylose synthase | 99.95 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 99.95 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 99.95 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 99.95 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 99.95 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 99.95 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 99.95 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 99.95 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 99.95 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 99.95 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 99.94 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 99.94 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.94 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 99.94 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 99.94 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 99.94 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 99.94 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 99.94 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 99.94 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 99.94 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 99.93 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 99.93 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 99.93 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 99.93 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 99.93 | |
| KOG1429|consensus | 350 | 99.93 | ||
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 99.93 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 99.93 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 99.92 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.92 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 99.92 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 99.92 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 99.92 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 99.92 | |
| KOG0747|consensus | 331 | 99.91 | ||
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 99.91 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 99.91 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 99.91 | |
| KOG1430|consensus | 361 | 99.89 | ||
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 99.89 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 99.88 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 99.88 | |
| KOG1371|consensus | 343 | 99.88 | ||
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 99.88 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 99.88 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 99.87 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 99.87 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 99.86 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 99.86 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 99.85 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 99.83 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 99.82 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 99.8 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.8 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 99.77 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.76 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 99.76 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 99.76 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 99.75 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.74 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 99.74 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 99.74 | |
| KOG2865|consensus | 391 | 99.74 | ||
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 99.74 | |
| KOG1431|consensus | 315 | 99.74 | ||
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 99.73 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 99.73 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 99.73 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 99.72 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 99.72 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 99.72 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 99.71 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 99.71 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 99.71 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 99.71 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 99.71 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 99.71 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 99.71 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.71 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 99.7 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.7 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 99.7 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 99.7 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 99.69 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 99.69 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 99.69 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.69 | |
| PRK05717 | 255 | oxidoreductase; Validated | 99.69 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.69 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 99.69 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 99.68 | |
| COG1089 | 345 | Gmd GDP-D-mannose dehydratase [Cell envelope bioge | 99.68 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 99.68 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.68 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 99.68 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.68 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 99.67 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.67 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.67 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 99.66 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 99.66 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 99.66 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 99.66 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 99.66 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 99.66 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 99.66 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 99.66 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 99.65 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 99.65 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 99.65 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 99.65 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 99.65 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 99.64 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 99.64 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 99.64 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 99.64 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 99.64 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 99.64 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 99.63 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 99.63 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.63 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 99.63 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 99.63 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 99.63 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 99.63 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 99.63 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 99.63 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 99.62 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 99.62 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 99.62 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 99.62 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 99.62 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 99.62 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 99.62 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 99.62 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 99.61 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.61 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.61 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 99.61 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.61 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 99.61 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 99.6 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 99.6 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 99.6 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 99.6 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 99.6 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 99.6 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 99.6 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 99.6 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 99.6 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 99.6 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 99.6 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 99.6 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 99.59 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.59 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 99.59 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 99.59 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 99.59 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 99.59 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 99.59 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 99.59 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 99.59 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 99.59 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 99.59 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.58 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 99.58 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.58 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 99.58 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 99.58 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 99.58 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 99.58 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 99.58 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 99.57 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 99.57 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 99.57 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 99.57 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 99.56 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 99.56 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 99.56 | |
| PRK08643 | 256 | acetoin reductase; Validated | 99.56 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 99.56 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 99.55 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 99.55 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 99.55 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 99.55 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 99.54 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.54 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 99.54 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 99.54 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 99.54 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 99.53 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 99.53 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 99.53 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 99.53 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.53 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 99.53 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 99.53 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 99.52 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 99.52 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 99.52 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.52 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.52 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 99.51 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 99.51 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 99.5 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 99.5 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.49 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 99.49 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.49 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 99.48 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 99.48 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 99.48 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 99.48 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 99.48 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.48 | |
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.48 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.47 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.47 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.47 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.46 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.46 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 99.46 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 99.45 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.45 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 99.45 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 99.45 | |
| KOG4288|consensus | 283 | 99.45 | ||
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 99.44 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.44 | |
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 99.44 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 99.43 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 99.43 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.43 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 99.42 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.42 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.42 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 99.42 | |
| KOG1205|consensus | 282 | 99.4 | ||
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 99.4 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.39 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 99.37 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 99.36 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 99.35 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 99.35 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 99.34 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 99.33 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 99.32 | |
| KOG1372|consensus | 376 | 99.32 | ||
| KOG4039|consensus | 238 | 99.31 | ||
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.31 | |
| KOG2774|consensus | 366 | 99.31 | ||
| KOG1201|consensus | 300 | 99.29 | ||
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 99.28 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 99.24 | |
| KOG0725|consensus | 270 | 99.15 | ||
| KOG1208|consensus | 314 | 99.15 | ||
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 99.15 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 99.13 | |
| PLN00015 | 308 | protochlorophyllide reductase | 99.12 | |
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 99.09 | |
| KOG1611|consensus | 249 | 99.02 | ||
| KOG1200|consensus | 256 | 99.01 | ||
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 99.0 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 99.0 | |
| KOG4169|consensus | 261 | 98.99 | ||
| PLN02730 | 303 | enoyl-[acyl-carrier-protein] reductase | 98.98 | |
| KOG1203|consensus | 411 | 98.97 | ||
| PRK12428 | 241 | 3-alpha-hydroxysteroid dehydrogenase; Provisional | 98.94 | |
| KOG1610|consensus | 322 | 98.93 | ||
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 98.85 | |
| KOG1207|consensus | 245 | 98.83 | ||
| KOG1209|consensus | 289 | 98.82 | ||
| PRK06300 | 299 | enoyl-(acyl carrier protein) reductase; Provisiona | 98.74 | |
| KOG1210|consensus | 331 | 98.65 | ||
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 98.62 | |
| PLN00106 | 323 | malate dehydrogenase | 98.5 | |
| KOG1014|consensus | 312 | 98.39 | ||
| PRK06720 | 169 | hypothetical protein; Provisional | 98.39 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 98.31 | |
| KOG3019|consensus | 315 | 98.28 | ||
| KOG1478|consensus | 341 | 98.18 | ||
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 98.17 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 98.11 | |
| PRK09620 | 229 | hypothetical protein; Provisional | 98.1 | |
| KOG1204|consensus | 253 | 98.0 | ||
| PRK05086 | 312 | malate dehydrogenase; Provisional | 97.86 | |
| PRK06732 | 229 | phosphopantothenate--cysteine ligase; Validated | 97.82 | |
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 97.8 | |
| KOG1199|consensus | 260 | 97.79 | ||
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 97.78 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 97.6 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 97.56 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 97.51 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 97.48 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.47 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 97.47 | |
| PRK05579 | 399 | bifunctional phosphopantothenoylcysteine decarboxy | 97.27 | |
| COG0623 | 259 | FabI Enoyl-[acyl-carrier-protein] | 97.26 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.11 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 97.05 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 97.05 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 97.03 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 96.96 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 96.91 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 96.91 | |
| KOG2733|consensus | 423 | 96.84 | ||
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 96.77 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 96.7 | |
| PF04127 | 185 | DFP: DNA / pantothenate metabolism flavoprotein; I | 96.66 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 96.62 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 96.55 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 96.52 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 96.5 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 96.49 | |
| KOG1202|consensus | 2376 | 96.48 | ||
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 96.46 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 96.46 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.41 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 96.4 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 96.37 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 96.37 | |
| KOG1494|consensus | 345 | 96.31 | ||
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 96.25 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 96.22 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 96.21 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 96.21 | |
| TIGR00521 | 390 | coaBC_dfp phosphopantothenoylcysteine decarboxylas | 96.19 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 96.16 | |
| PLN02602 | 350 | lactate dehydrogenase | 96.13 | |
| COG4982 | 866 | 3-oxoacyl-[acyl-carrier protein] | 96.13 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 96.11 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 96.08 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 96.03 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 96.03 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 96.02 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 95.91 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 95.86 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 95.74 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 95.73 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 95.7 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 95.63 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.62 | |
| KOG4022|consensus | 236 | 95.51 | ||
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 95.47 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 95.41 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 95.41 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 95.38 | |
| PRK08223 | 287 | hypothetical protein; Validated | 95.37 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 95.27 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 95.23 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 95.18 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 95.17 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 94.99 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 94.94 | |
| TIGR02114 | 227 | coaB_strep phosphopantothenate--cysteine ligase, s | 94.92 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.9 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 94.82 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 94.74 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 94.74 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 94.73 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 94.73 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 94.72 | |
| PRK07411 | 390 | hypothetical protein; Validated | 94.68 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 94.62 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 94.5 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 94.43 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 94.42 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 94.34 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 94.33 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 93.82 | |
| TIGR01381 | 664 | E1_like_apg7 E1-like protein-activating enzyme Gsa | 93.71 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 93.48 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 93.33 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 93.29 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 93.15 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.12 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 93.1 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 93.03 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 93.02 | |
| PRK13982 | 475 | bifunctional SbtC-like/phosphopantothenoylcysteine | 93.01 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 92.89 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 92.59 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 92.55 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 92.37 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 92.33 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 92.24 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 92.22 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 92.17 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 92.01 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.88 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 91.85 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 91.81 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 91.57 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 91.42 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 91.26 | |
| KOG1496|consensus | 332 | 91.18 | ||
| cd01493 | 425 | APPBP1_RUB Ubiquitin activating enzyme (E1) subuni | 91.13 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 91.02 | |
| PF02670 | 129 | DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re | 90.98 | |
| PRK08057 | 248 | cobalt-precorrin-6x reductase; Reviewed | 90.9 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 90.81 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 90.8 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 90.78 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 90.68 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 90.64 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 90.52 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 90.51 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 90.48 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 90.42 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 90.29 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 90.26 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 90.22 | |
| KOG2013|consensus | 603 | 90.18 | ||
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 90.02 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.02 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 90.01 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 89.95 | |
| PF08732 | 410 | HIM1: HIM1; InterPro: IPR014843 HIM1 (high inducti | 89.76 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 89.74 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 89.32 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 89.28 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 89.24 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 89.2 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 89.17 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 88.74 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 88.57 | |
| PF02571 | 249 | CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: | 88.36 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 88.31 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 88.22 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 88.22 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 88.19 | |
| cd01488 | 291 | Uba3_RUB Ubiquitin activating enzyme (E1) subunit | 88.01 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 88.0 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 87.88 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 87.84 | |
| KOG1198|consensus | 347 | 87.84 | ||
| KOG0069|consensus | 336 | 87.66 | ||
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 87.62 | |
| TIGR03693 | 637 | ocin_ThiF_like putative thiazole-containing bacter | 87.58 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 87.02 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 86.93 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 86.89 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 86.36 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 86.23 | |
| PRK09288 | 395 | purT phosphoribosylglycinamide formyltransferase 2 | 86.22 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 86.2 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 86.18 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 86.16 | |
| TIGR01408 | 1008 | Ube1 ubiquitin-activating enzyme E1. This model re | 86.06 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 85.97 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 85.96 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 85.92 | |
| PRK06901 | 322 | aspartate-semialdehyde dehydrogenase; Provisional | 85.7 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 85.64 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 85.56 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 85.3 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 85.17 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 85.16 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 85.16 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 85.0 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 84.99 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 84.82 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 84.76 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 84.74 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 84.66 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 84.65 | |
| KOG2018|consensus | 430 | 84.57 | ||
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 84.52 | |
| cd08259 | 332 | Zn_ADH5 Alcohol dehydrogenases of the MDR family. | 84.5 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 84.43 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 84.38 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 84.22 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 83.78 | |
| cd01490 | 435 | Ube1_repeat2 Ubiquitin activating enzyme (E1), rep | 83.69 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 83.42 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 83.38 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 83.3 | |
| PLN02928 | 347 | oxidoreductase family protein | 83.15 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 83.09 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 83.09 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 82.95 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 82.92 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 82.78 |
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=320.23 Aligned_cols=296 Identities=33% Similarity=0.553 Sum_probs=241.1
Q ss_pred CcccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHH-HHhhhhhhhhhhhcCCCCCCccc
Q psy17528 40 SPIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVY-NYFNDAVFDRMRLECPNYADKVD 118 (366)
Q Consensus 40 ~~~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~ 118 (366)
+++.+++++++|||||||||||++|+++|++.++++.+|+++.|.....+..+|+. ++....+|+.++..++..+
T Consensus 3 ~~i~~~~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~---- 78 (491)
T PLN02996 3 GSCVQFLENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENL---- 78 (491)
T ss_pred ccHHHHhCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhh----
Confidence 56889999999999999999999999999998888999999999988888888885 6666667776665411100
Q ss_pred cccccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHH-HHHHHhCcCEEEEcCcccChhhhHHHHHHHH
Q psy17528 119 IGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARD-EELLISQTTIIFHIAATVRFDEHIRTAYNIN 197 (366)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~-~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~n 197 (366)
......++.++.||+.++.+||+..+ +..+++++|+|||+|+.+++..++....++|
T Consensus 79 ----------------------~~~~~~kv~~i~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~~~~~~~~~~~~N 136 (491)
T PLN02996 79 ----------------------NSLISEKVTPVPGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTNFDERYDVALGIN 136 (491)
T ss_pred ----------------------hhhhhcCEEEEecccCCcCCCCChHHHHHHHHhCCCEEEECccccCCcCCHHHHHHHH
Confidence 00112689999999999999998766 5677889999999999988777888899999
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEeeCcceecCcc-ccccccCCCCC--------ChHH--------HHHHhhh-cchHHHH
Q psy17528 198 VKGTQTILALAKRMKGLKSFVHVSTAYCNCDRK-FIAEKFYPPVF--------TAEE--------LSALVAH-ASDEEIA 259 (366)
Q Consensus 198 v~~~~~ll~~a~~~~~~~~~v~iSS~~~~~~~~-~~~e~~~~~p~--------~~~~--------~~~~~~~-~~~~~~~ 259 (366)
+.|+.++++++.+..++++|||+||+++|+... .+.|.+++.+. ++++ +....++ .+++++.
T Consensus 137 v~gt~~ll~~a~~~~~~k~~V~vST~~vyG~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (491)
T PLN02996 137 TLGALNVLNFAKKCVKVKMLLHVSTAYVCGEKSGLILEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEIT 216 (491)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEeeeEEecCCCceeeeecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHH
Confidence 999999999999865788999999999998654 56777777544 2221 1122222 3444433
Q ss_pred h------hhhcccCCCCchHHHHHHHHHHHHHHhcCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCccee
Q psy17528 260 L------LNEHIIGGKPNSYTLTKATAEDLVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRV 333 (366)
Q Consensus 260 ~------~~~~~~~~~~~~Y~~sK~~~E~~l~~~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 333 (366)
. .++.....+++.|+.||+.+|+++.++..+++++++||++|||+++.|.++|++++.++..++....+|....
T Consensus 217 ~~~~~~~~~~~~~~~~pn~Y~~TK~~aE~lv~~~~~~lpv~i~RP~~V~G~~~~p~~gwi~~~~~~~~i~~~~~~g~~~~ 296 (491)
T PLN02996 217 QAMKDLGMERAKLHGWPNTYVFTKAMGEMLLGNFKENLPLVIIRPTMITSTYKEPFPGWIEGLRTIDSVIVGYGKGKLTC 296 (491)
T ss_pred HHhhhhchhHHHhCCCCCchHhhHHHHHHHHHHhcCCCCEEEECCCEeccCCcCCCCCcccchhhHHHHHHHhccceEeE
Confidence 1 3444456788999999999999998877789999999999999999999999998888788888888999888
Q ss_pred ecCCCCcccCcccHHHHHHHHHHHHHhh
Q psy17528 334 VQTDPNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 334 l~~~~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
++++++..+|+|||||+|+|++.++++.
T Consensus 297 ~~gdg~~~~D~v~Vddvv~a~l~a~~~~ 324 (491)
T PLN02996 297 FLADPNSVLDVIPADMVVNAMIVAMAAH 324 (491)
T ss_pred EecCCCeecceecccHHHHHHHHHHHHh
Confidence 8999999999999999999999998863
|
|
| >KOG1221|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=312.48 Aligned_cols=292 Identities=41% Similarity=0.703 Sum_probs=276.5
Q ss_pred CcccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccc
Q psy17528 40 SPIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDI 119 (366)
Q Consensus 40 ~~~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (366)
+++.+++++|+|||||||||+|.-++++|++..+++.+|+++.|.....+..+|+..++.+.+|+.++..
T Consensus 4 ~~i~~f~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~---------- 73 (467)
T KOG1221|consen 4 SDIVQFYKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEK---------- 73 (467)
T ss_pred ccHHHHhCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhh----------
Confidence 3478999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ccccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHH
Q psy17528 120 GITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVK 199 (366)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~ 199 (366)
.+....++..+.||+.++++|++..+.+.+.+.+++|||+||.+.+++..+....+|+.
T Consensus 74 ---------------------~p~~l~Kv~pi~GDi~~~~LGis~~D~~~l~~eV~ivih~AAtvrFde~l~~al~iNt~ 132 (467)
T KOG1221|consen 74 ---------------------KPEALEKVVPIAGDISEPDLGISESDLRTLADEVNIVIHSAATVRFDEPLDVALGINTR 132 (467)
T ss_pred ---------------------CccceecceeccccccCcccCCChHHHHHHHhcCCEEEEeeeeeccchhhhhhhhhhhH
Confidence 66677899999999999999999999998889999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEeeCcceecCccccccccCCCCC--ChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHH
Q psy17528 200 GTQTILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVF--TAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTK 277 (366)
Q Consensus 200 ~~~~ll~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK 277 (366)
|+++++++|+++..++-++|+||+|+.+....+.|+.|+.+. +++......++++++-+...++...+.+||.|..+|
T Consensus 133 Gt~~~l~lak~~~~l~~~vhVSTAy~n~~~~~i~E~~y~~~~~~~~~~~i~~~~~~~~~~ld~~~~~l~~~~PNTYtfTK 212 (467)
T KOG1221|consen 133 GTRNVLQLAKEMVKLKALVHVSTAYSNCNVGHIEEKPYPMPETCNPEKILKLDENLSDELLDQKAPKLLGGWPNTYTFTK 212 (467)
T ss_pred hHHHHHHHHHHhhhhheEEEeehhheecccccccccccCccccCCHHHHHhhhccchHHHHHHhhHHhcCCCCCceeehH
Confidence 999999999999899999999999999888889999999998 788788999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHH
Q psy17528 278 ATAEDLVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAAL 357 (366)
Q Consensus 278 ~~~E~~l~~~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~ 357 (366)
+.+|+++.+...++|.+|+||++|.++..+|.+||+++..++..++....+|..+.+..+++...|+|+||.|+++++.+
T Consensus 213 al~E~~i~~~~~~lPivIiRPsiI~st~~EP~pGWidn~~gp~g~i~g~gkGvlr~~~~d~~~~adiIPvD~vvN~~ia~ 292 (467)
T KOG1221|consen 213 ALAEMVIQKEAENLPLVIIRPSIITSTYKEPFPGWIDNLNGPDGVIIGYGKGVLRCFLVDPKAVADIIPVDMVVNAMIAS 292 (467)
T ss_pred hhHHHHHHhhccCCCeEEEcCCceeccccCCCCCccccCCCCceEEEEeccceEEEEEEccccccceeeHHHHHHHHHHH
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHhhh
Q psy17528 358 AWYFL 362 (366)
Q Consensus 358 ~~~~~ 362 (366)
++..+
T Consensus 293 ~~~~~ 297 (467)
T KOG1221|consen 293 AWQHA 297 (467)
T ss_pred HHHHh
Confidence 86654
|
|
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=309.18 Aligned_cols=295 Identities=31% Similarity=0.478 Sum_probs=241.8
Q ss_pred CcccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHH-HHhhhhhhhhhhhcCCCCCCccc
Q psy17528 40 SPIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVY-NYFNDAVFDRMRLECPNYADKVD 118 (366)
Q Consensus 40 ~~~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~ 118 (366)
..+.+++++++|||||||||||.+|+++|++.++++.+|++++|.....+..+|+. +++...+|+.++...+..+
T Consensus 111 ~~I~~f~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~---- 186 (605)
T PLN02503 111 IGIAEFLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSY---- 186 (605)
T ss_pred cchhhhhcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccc----
Confidence 45679999999999999999999999999998888899999999988888889985 6677788888877511100
Q ss_pred cccccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHH
Q psy17528 119 IGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINV 198 (366)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv 198 (366)
......++.++.||+.++.+||+......+.+++|+|||+|+.+.+..+++...++|+
T Consensus 187 ----------------------~~~~~~Ki~~v~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~f~~~~~~a~~vNV 244 (605)
T PLN02503 187 ----------------------QSFMLSKLVPVVGNVCESNLGLEPDLADEIAKEVDVIINSAANTTFDERYDVAIDINT 244 (605)
T ss_pred ----------------------cccccccEEEEEeeCCCcccCCCHHHHHHHHhcCCEEEECccccccccCHHHHHHHHH
Confidence 0012468999999999999999999998888899999999999888888889999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeeCcceecCcc-ccccccCC-------------------CCCChHHHHHHh----h--h
Q psy17528 199 KGTQTILALAKRMKGLKSFVHVSTAYCNCDRK-FIAEKFYP-------------------PVFTAEELSALV----A--H 252 (366)
Q Consensus 199 ~~~~~ll~~a~~~~~~~~~v~iSS~~~~~~~~-~~~e~~~~-------------------~p~~~~~~~~~~----~--~ 252 (366)
.++.+++++|++.+.+++|||+||+++|+... .+.|+.|+ ++.+++...... + .
T Consensus 245 ~GT~nLLelA~~~~~lk~fV~vSTayVyG~~~G~i~E~~y~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~ 324 (605)
T PLN02503 245 RGPCHLMSFAKKCKKLKLFLQVSTAYVNGQRQGRIMEKPFRMGDCIARELGISNSLPHNRPALDIEAEIKLALDSKRHGF 324 (605)
T ss_pred HHHHHHHHHHHHcCCCCeEEEccCceeecCCCCeeeeeecCcccccccccccccccccccccCCHHHHHHHHHHhhhccc
Confidence 99999999999876788999999999999875 78898886 344555444333 1 1
Q ss_pred cchHHHHh-----hhhcccCCCCchHHHHHHHHHHHHHHhcCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHh
Q psy17528 253 ASDEEIAL-----LNEHIIGGKPNSYTLTKATAEDLVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAG 327 (366)
Q Consensus 253 ~~~~~~~~-----~~~~~~~~~~~~Y~~sK~~~E~~l~~~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~ 327 (366)
.+.+.... +++....++||.|..||.++|+++.+...++|++|+||++|.+...+|.+||.++.......+....
T Consensus 325 ~~~~~~~~l~~~g~~~~~~~~~pNtYt~TK~lAE~lV~~~~~~LPv~IvRPsiV~st~~eP~pGw~d~~~~~~p~~~~~g 404 (605)
T PLN02503 325 QSNSFAQKMKDLGLERAKLYGWQDTYVFTKAMGEMVINSMRGDIPVVIIRPSVIESTWKDPFPGWMEGNRMMDPIVLYYG 404 (605)
T ss_pred chHHHHHHhhhcccchhhhCCCCChHHHHHHHHHHHHHHhcCCCCEEEEcCCEecccccCCccccccCccccchhhhhee
Confidence 11122222 3444678999999999999999999877789999999999999999999999998544444444456
Q ss_pred cCcceeecCCCCcccCcccHHHHHHHHHHHHHh
Q psy17528 328 TGLIRVVQTDPNISMDVVPGDRVINAMAALAWY 360 (366)
Q Consensus 328 ~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~ 360 (366)
+|....+.++++...|+|+||.|++|++.++..
T Consensus 405 ~G~lr~~~~~~~~~~DiVPVD~vvna~i~a~a~ 437 (605)
T PLN02503 405 KGQLTGFLADPNGVLDVVPADMVVNATLAAMAK 437 (605)
T ss_pred ccceeEEEeCCCeeEeEEeecHHHHHHHHHHHh
Confidence 888887889999999999999999999998543
|
|
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=251.93 Aligned_cols=244 Identities=34% Similarity=0.496 Sum_probs=155.3
Q ss_pred EeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhh-hhhhhhhcCCCCCCccccccccccccccch
Q psy17528 53 ITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDA-VFDRMRLECPNYADKVDIGITHRVYNYFND 131 (366)
Q Consensus 53 ItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (366)
|||||||+|++|+++|++.++.+ +|+|+.|..+.....+|+.+.+... +++....
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~-~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~----------------------- 56 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDV-KIYCLVRASSSQSALERLKDALKEYGLWDDLDK----------------------- 56 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TT-EEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-H-----------------------
T ss_pred CcCCCcHHHHHHHHHHHcCCCCc-EEEEEEeCcccccchhhhhhhcccccchhhhhh-----------------------
Confidence 79999999999999999997444 9999999987777778887665542 2222210
Q ss_pred hhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHHHHHHhc
Q psy17528 132 AVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALAKRM 211 (366)
Q Consensus 132 ~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll~~a~~~ 211 (366)
...+++.++.||++++.|||+..++..+.+.+|+|||+||.+++...+.++.+.|+.|+++++++|...
T Consensus 57 -----------~~~~ri~~v~GDl~~~~lGL~~~~~~~L~~~v~~IiH~Aa~v~~~~~~~~~~~~NV~gt~~ll~la~~~ 125 (249)
T PF07993_consen 57 -----------EALSRIEVVEGDLSQPNLGLSDEDYQELAEEVDVIIHCAASVNFNAPYSELRAVNVDGTRNLLRLAAQG 125 (249)
T ss_dssp -----------HHTTTEEEEE--TTSGGGG--HHHHHHHHHH--EEEE--SS-SBS-S--EEHHHHHHHHHHHHHHHTSS
T ss_pred -----------hhhccEEEEeccccccccCCChHHhhccccccceeeecchhhhhcccchhhhhhHHHHHHHHHHHHHhc
Confidence 013799999999999999999999999999999999999999999999989999999999999999975
Q ss_pred CCCcEEEEeeCcceecCcc-ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHHhc--
Q psy17528 212 KGLKSFVHVSTAYCNCDRK-FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVG-- 288 (366)
Q Consensus 212 ~~~~~~v~iSS~~~~~~~~-~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-- 288 (366)
..++|+|+||+++.+... ...|..++ ............+++|..||+.+|++++++.
T Consensus 126 -~~~~~~~iSTa~v~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~gY~~SK~~aE~~l~~a~~~ 185 (249)
T PF07993_consen 126 -KRKRFHYISTAYVAGSRPGTIEEKVYP-------------------EEEDDLDPPQGFPNGYEQSKWVAERLLREAAQR 185 (249)
T ss_dssp -S---EEEEEEGGGTTS-TTT--SSS-H-------------------HH--EEE--TTSEE-HHHHHHHHHHHHHHHHHH
T ss_pred -cCcceEEeccccccCCCCCcccccccc-------------------cccccchhhccCCccHHHHHHHHHHHHHHHHhc
Confidence 555999999976665443 22222111 0111222334556899999999999999998
Q ss_pred CCCCEEEEecCccccCCCCCCCccccccchHHHH-HHHHhcCcceeecCCCCcccCcccHHHHHHHH
Q psy17528 289 HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMAL-ALGAGTGLIRVVQTDPNISMDVVPGDRVINAM 354 (366)
Q Consensus 289 ~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai 354 (366)
.|++++|+||+.|+|... .++.........+ ......|......+.++...|+++||.+|++|
T Consensus 186 ~g~p~~I~Rp~~i~g~~~---~G~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~vPVD~va~aI 249 (249)
T PF07993_consen 186 HGLPVTIYRPGIIVGDSR---TGWWNSDDFFPYLLRSCIALGAFPDLPGDPDARLDLVPVDYVARAI 249 (249)
T ss_dssp H---EEEEEE-EEE-SSS---SS---TTBHHHHHHHHHHHH-EEES-SB---TT--EEEHHHHHHHH
T ss_pred CCceEEEEecCcccccCC---CceeeccchHHHHHHHHHHcCCcccccCCCCceEeEECHHHHHhhC
Confidence 599999999999999433 3555555523333 33444566555666667789999999999986
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=248.86 Aligned_cols=232 Identities=20% Similarity=0.136 Sum_probs=175.3
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++|||||||||||++|+++|++.| ++|++++|...... ..+.+... ..
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g---~~V~~~d~~~~~~~--~~~~~~~~-----~~------------------- 63 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLN---QTVIGLDNFSTGYQ--HNLDDVRT-----SV------------------- 63 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCC---CEEEEEeCCCCcch--hhhhhhhh-----cc-------------------
Confidence 567899999999999999999999998 78999998643211 00100000 00
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh---hhHHHHHHHHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD---EHIRTAYNINVKGTQ 202 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~---~~~~~~~~~nv~~~~ 202 (366)
......++.++.+|+.+.. .+..+++++|+|||+|+..... .++...+++|+.++.
T Consensus 64 ---------------~~~~~~~~~~~~~Di~d~~------~l~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~ 122 (348)
T PRK15181 64 ---------------SEEQWSRFIFIQGDIRKFT------DCQKACKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFL 122 (348)
T ss_pred ---------------ccccCCceEEEEccCCCHH------HHHHHhhCCCEEEECccccCchhhhhCHHHHHHHHHHHHH
Confidence 0011246889999999876 7788888999999999975432 345668899999999
Q ss_pred HHHHHHHhcCCCcEEEEeeCcceecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHH
Q psy17528 203 TILALAKRMKGLKSFVHVSTAYCNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATA 280 (366)
Q Consensus 203 ~ll~~a~~~~~~~~~v~iSS~~~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~ 280 (366)
++++++++. ++++|||+||+.+|+... +..|+..+.| .+.|+.+|..+
T Consensus 123 nll~~~~~~-~~~~~v~~SS~~vyg~~~~~~~~e~~~~~p-----------------------------~~~Y~~sK~~~ 172 (348)
T PRK15181 123 NMLTAARDA-HVSSFTYAASSSTYGDHPDLPKIEERIGRP-----------------------------LSPYAVTKYVN 172 (348)
T ss_pred HHHHHHHHc-CCCeEEEeechHhhCCCCCCCCCCCCCCCC-----------------------------CChhhHHHHHH
Confidence 999999987 889999999998887432 2333322222 16899999999
Q ss_pred HHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHH
Q psy17528 281 EDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALA 358 (366)
Q Consensus 281 E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~ 358 (366)
|.+++.+. ++++++++||++||||+..+..... ..+..++.++..+....++++++..+||+||+|+|++++.++
T Consensus 173 e~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~---~~i~~~~~~~~~~~~i~~~g~g~~~rd~i~v~D~a~a~~~~~ 249 (348)
T PRK15181 173 ELYADVFARSYEFNAIGLRYFNVFGRRQNPNGAYS---AVIPRWILSLLKDEPIYINGDGSTSRDFCYIENVIQANLLSA 249 (348)
T ss_pred HHHHHHHHHHhCCCEEEEEecceeCcCCCCCCccc---cCHHHHHHHHHcCCCcEEeCCCCceEeeEEHHHHHHHHHHHH
Confidence 99998766 6899999999999999875432211 123556667777888888889999999999999999999877
Q ss_pred Hh
Q psy17528 359 WY 360 (366)
Q Consensus 359 ~~ 360 (366)
..
T Consensus 250 ~~ 251 (348)
T PRK15181 250 TT 251 (348)
T ss_pred hc
Confidence 64
|
|
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-29 Score=235.64 Aligned_cols=225 Identities=20% Similarity=0.258 Sum_probs=179.2
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
++||||||+||||||.+.+|++.| +.|+++++-..... +.+.
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G---~~vvV~DNL~~g~~--~~v~--------------------------------- 42 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTG---HEVVVLDNLSNGHK--IALL--------------------------------- 42 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCC---CeEEEEecCCCCCH--HHhh---------------------------------
Confidence 589999999999999999999999 88888888643211 1000
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccChhh---hHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRFDE---HIRTAYNINVKGTQT 203 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~~~---~~~~~~~~nv~~~~~ 203 (366)
...+.|+.||+.|.. .+.+++. ++|.|||+||...+.+ .+...++.|+.|+..
T Consensus 43 ----------------~~~~~f~~gDi~D~~------~L~~vf~~~~idaViHFAa~~~VgESv~~Pl~Yy~NNv~gTl~ 100 (329)
T COG1087 43 ----------------KLQFKFYEGDLLDRA------LLTAVFEENKIDAVVHFAASISVGESVQNPLKYYDNNVVGTLN 100 (329)
T ss_pred ----------------hccCceEEeccccHH------HHHHHHHhcCCCEEEECccccccchhhhCHHHHHhhchHhHHH
Confidence 011689999999987 6888776 7899999999876544 456789999999999
Q ss_pred HHHHHHhcCCCcEEEEeeCcceecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHH
Q psy17528 204 ILALAKRMKGLKSFVHVSTAYCNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAE 281 (366)
Q Consensus 204 ll~~a~~~~~~~~~v~iSS~~~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E 281 (366)
|++++.+. ++++|||.||+.+||... |+.|+....|. |+||.||++.|
T Consensus 101 Ll~am~~~-gv~~~vFSStAavYG~p~~~PI~E~~~~~p~-----------------------------NPYG~sKlm~E 150 (329)
T COG1087 101 LIEAMLQT-GVKKFIFSSTAAVYGEPTTSPISETSPLAPI-----------------------------NPYGRSKLMSE 150 (329)
T ss_pred HHHHHHHh-CCCEEEEecchhhcCCCCCcccCCCCCCCCC-----------------------------CcchhHHHHHH
Confidence 99999998 899999999999998654 78888766654 89999999999
Q ss_pred HHHHHhc--CCCCEEEEecCccccCCCC-CCCccccccchHHHHHHHHhcCcce--eec------CCCCcccCcccHHHH
Q psy17528 282 DLVRQVG--HELPICVLRPSIVFPTLQE-PMPLWIKGFNGVMALALGAGTGLIR--VVQ------TDPNISMDVVPGDRV 350 (366)
Q Consensus 282 ~~l~~~~--~gl~~~ilRp~~v~G~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~--~l~------~~~~~~~~~v~vdDv 350 (366)
++++.+. +++++++||.+++.|.... ..+++..+.......+.+...|+.. .++ .||+..||||||.|+
T Consensus 151 ~iL~d~~~a~~~~~v~LRYFN~aGA~~~G~iGe~~~~~thLip~~~q~A~G~r~~l~ifG~DY~T~DGT~iRDYIHV~DL 230 (329)
T COG1087 151 EILRDAAKANPFKVVILRYFNVAGACPDGTLGQRYPGATLLIPVAAEAALGKRDKLFIFGDDYDTKDGTCIRDYIHVDDL 230 (329)
T ss_pred HHHHHHHHhCCCcEEEEEecccccCCCCCccCCCCCCcchHHHHHHHHHhcCCceeEEeCCCCCCCCCCeeeeeeehhHH
Confidence 9999988 8899999999999997543 2445554454555555555555543 344 357899999999999
Q ss_pred HHHHHHHHHhhhh
Q psy17528 351 INAMAALAWYFLF 363 (366)
Q Consensus 351 a~ai~~~~~~~~~ 363 (366)
|+|-++|+++-..
T Consensus 231 A~aH~~Al~~L~~ 243 (329)
T COG1087 231 ADAHVLALKYLKE 243 (329)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987654
|
|
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-28 Score=233.23 Aligned_cols=219 Identities=25% Similarity=0.277 Sum_probs=164.6
Q ss_pred EEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccccch
Q psy17528 52 FITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNYFND 131 (366)
Q Consensus 52 lItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (366)
|||||+||||++|+++|+++|+ +..|.++++........
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~-~~~Vr~~d~~~~~~~~~---------------------------------------- 39 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGY-IYEVRVLDRSPPPKFLK---------------------------------------- 39 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCC-ceEEEEcccccccccch----------------------------------------
Confidence 6999999999999999999984 67888888876432100
Q ss_pred hhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhh--hHHHHHHHHHHHHHHHHHHHH
Q psy17528 132 AVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDE--HIRTAYNINVKGTQTILALAK 209 (366)
Q Consensus 132 ~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~--~~~~~~~~nv~~~~~ll~~a~ 209 (366)
.........++.+|+++.+ .+.++++++|+|||+|+...... ..+.++++|+.|+++++++|+
T Consensus 40 ---------~~~~~~~~~~~~~Di~d~~------~l~~a~~g~d~V~H~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~ 104 (280)
T PF01073_consen 40 ---------DLQKSGVKEYIQGDITDPE------SLEEALEGVDVVFHTAAPVPPWGDYPPEEYYKVNVDGTRNVLEAAR 104 (280)
T ss_pred ---------hhhcccceeEEEeccccHH------HHHHHhcCCceEEEeCccccccCcccHHHHHHHHHHHHHHHHHHHH
Confidence 0001123349999999988 89999999999999999865443 567799999999999999999
Q ss_pred hcCCCcEEEEeeCcceecC---ccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHH
Q psy17528 210 RMKGLKSFVHVSTAYCNCD---RKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQ 286 (366)
Q Consensus 210 ~~~~~~~~v~iSS~~~~~~---~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~ 286 (366)
+. ++++|||+||..++.+ ..++.+.....| ++....+.|+.||+.+|+++++
T Consensus 105 ~~-~VkrlVytSS~~vv~~~~~~~~~~~~dE~~~------------------------~~~~~~~~Y~~SK~~AE~~V~~ 159 (280)
T PF01073_consen 105 KA-GVKRLVYTSSISVVFDNYKGDPIINGDEDTP------------------------YPSSPLDPYAESKALAEKAVLE 159 (280)
T ss_pred Hc-CCCEEEEEcCcceeEeccCCCCcccCCcCCc------------------------ccccccCchHHHHHHHHHHHHh
Confidence 87 8999999999988865 222211100011 1112347899999999999988
Q ss_pred hc-------CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHH
Q psy17528 287 VG-------HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAW 359 (366)
Q Consensus 287 ~~-------~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~ 359 (366)
.. ..+.+++|||+.||||+..... ..+......|......++++...+++||+|||.|.+.|++
T Consensus 160 a~~~~~~~g~~l~t~~lRP~~IyGp~d~~~~---------~~~~~~~~~g~~~~~~g~~~~~~~~vyV~NvA~ahvlA~~ 230 (280)
T PF01073_consen 160 ANGSELKNGGRLRTCALRPAGIYGPGDQRLV---------PRLVKMVRSGLFLFQIGDGNNLFDFVYVENVAHAHVLAAQ 230 (280)
T ss_pred hcccccccccceeEEEEeccEEeCccccccc---------chhhHHHHhcccceeecCCCceECcEeHHHHHHHHHHHHH
Confidence 75 2388999999999999875321 1123333445455666777889999999999999998876
Q ss_pred h
Q psy17528 360 Y 360 (366)
Q Consensus 360 ~ 360 (366)
.
T Consensus 231 ~ 231 (280)
T PF01073_consen 231 A 231 (280)
T ss_pred H
Confidence 4
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=242.00 Aligned_cols=254 Identities=12% Similarity=0.074 Sum_probs=174.7
Q ss_pred CcccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCc-CH-------------HHHHHHHhhhhhhhh
Q psy17528 40 SPIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGST-SI-------------TQRVYNYFNDAVFDR 105 (366)
Q Consensus 40 ~~~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~-~~-------------~~~i~~~~~~~~~~~ 105 (366)
+.....+++++||||||+||||++|+++|++.| +.|++++|..... .. .+++..
T Consensus 39 ~~~~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G---~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------- 106 (442)
T PLN02572 39 PGSSSSSKKKKVMVIGGDGYCGWATALHLSKRG---YEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRR--------- 106 (442)
T ss_pred CCCCccccCCEEEEECCCcHHHHHHHHHHHHCC---CeEEEEeccccccccccccccccccccchHHHHHH---------
Confidence 445566778999999999999999999999998 7888887532110 00 000000
Q ss_pred hhhcCCCCCCccccccccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcc
Q psy17528 106 MRLECPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAAT 183 (366)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~ 183 (366)
+. .....++.++.+|+.|.+ .+.++++ ++|+|||+|+.
T Consensus 107 ~~----------------------------------~~~~~~v~~v~~Dl~d~~------~v~~~l~~~~~D~ViHlAa~ 146 (442)
T PLN02572 107 WK----------------------------------EVSGKEIELYVGDICDFE------FLSEAFKSFEPDAVVHFGEQ 146 (442)
T ss_pred HH----------------------------------HhhCCcceEEECCCCCHH------HHHHHHHhCCCCEEEECCCc
Confidence 00 001236889999999977 7777776 58999999976
Q ss_pred cChh------hhHHHHHHHHHHHHHHHHHHHHhcCCCc-EEEEeeCcceecCc-cccccccCCCCCChHHHHHHhhhcch
Q psy17528 184 VRFD------EHIRTAYNINVKGTQTILALAKRMKGLK-SFVHVSTAYCNCDR-KFIAEKFYPPVFTAEELSALVAHASD 255 (366)
Q Consensus 184 ~~~~------~~~~~~~~~nv~~~~~ll~~a~~~~~~~-~~v~iSS~~~~~~~-~~~~e~~~~~p~~~~~~~~~~~~~~~ 255 (366)
.... ......+++|+.++.++++++++. +++ +||++||..+|+.. .+++|...+. ++. . .
T Consensus 147 ~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~-gv~~~~V~~SS~~vYG~~~~~~~E~~i~~--~~~--------~-~ 214 (442)
T PLN02572 147 RSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEF-APDCHLVKLGTMGEYGTPNIDIEEGYITI--THN--------G-R 214 (442)
T ss_pred ccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHh-CCCccEEEEecceecCCCCCCCccccccc--ccc--------c-c
Confidence 4322 122445788999999999999886 564 89999999999753 2333331100 000 0 0
Q ss_pred HHHHhhhhcccCCCCchHHHHHHHHHHHHHHhc--CCCCEEEEecCccccCCCCCC---Cccccc------c-chHHHHH
Q psy17528 256 EEIALLNEHIIGGKPNSYTLTKATAEDLVRQVG--HELPICVLRPSIVFPTLQEPM---PLWIKG------F-NGVMALA 323 (366)
Q Consensus 256 ~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~---~~~~~~------~-~~~~~~~ 323 (366)
| .++..+....+.|+.+|..+|.++..++ ++++++++||++||||++.+. +..+.. + ..+..++
T Consensus 215 e----~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~~~~~~~~~li~~~~~~~~~~~~i~~~~ 290 (442)
T PLN02572 215 T----DTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETMMDEELINRLDYDGVFGTALNRFC 290 (442)
T ss_pred c----ccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCCcccccccccccccCcccchhhHHHHHH
Confidence 0 0000001112789999999999998877 799999999999999986531 111100 0 2234566
Q ss_pred HHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhh
Q psy17528 324 LGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 324 ~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
.++..|.+..+++++++.+||+||+|+|++++.+++..
T Consensus 291 ~~~~~g~~i~v~g~G~~~Rdfi~V~Dva~a~~~al~~~ 328 (442)
T PLN02572 291 VQAAVGHPLTVYGKGGQTRGFLDIRDTVRCIEIAIANP 328 (442)
T ss_pred HHHhcCCCceecCCCCEEECeEEHHHHHHHHHHHHhCh
Confidence 77778887778889999999999999999999998764
|
|
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-27 Score=225.96 Aligned_cols=225 Identities=23% Similarity=0.195 Sum_probs=181.5
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
|++|||||+||||+..++.++++.+. .+|++++.-.=. ...+.+..
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d-~~v~~~DkLTYA-gn~~~l~~-------------------------------- 46 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPD-DHVVNLDKLTYA-GNLENLAD-------------------------------- 46 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCC-ceEEEEeccccc-CCHHHHHh--------------------------------
Confidence 57999999999999999999999644 778888874311 11111111
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccChhh---hHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRFDE---HIRTAYNINVKGTQT 203 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~~~---~~~~~~~~nv~~~~~ 203 (366)
-...++..|+++|++|.. .+.+++. ++|+|+|.|+-+++++ .+..+.++|+.|+.+
T Consensus 47 -------------~~~~~~~~fv~~DI~D~~------~v~~~~~~~~~D~VvhfAAESHVDRSI~~P~~Fi~TNv~GT~~ 107 (340)
T COG1088 47 -------------VEDSPRYRFVQGDICDRE------LVDRLFKEYQPDAVVHFAAESHVDRSIDGPAPFIQTNVVGTYT 107 (340)
T ss_pred -------------hhcCCCceEEeccccCHH------HHHHHHHhcCCCeEEEechhccccccccChhhhhhcchHHHHH
Confidence 111368999999999987 7888887 6899999999988775 457899999999999
Q ss_pred HHHHHHhcCCCcEEEEeeCcceecCcc----ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHH
Q psy17528 204 ILALAKRMKGLKSFVHVSTAYCNCDRK----FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKAT 279 (366)
Q Consensus 204 ll~~a~~~~~~~~~v~iSS~~~~~~~~----~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~ 279 (366)
||+++++.....||+|+||.-|||+-. ..+|+.+-.| .++|..||+.
T Consensus 108 LLEaar~~~~~frf~HISTDEVYG~l~~~~~~FtE~tp~~P-----------------------------sSPYSASKAa 158 (340)
T COG1088 108 LLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTETTPYNP-----------------------------SSPYSASKAA 158 (340)
T ss_pred HHHHHHHhcccceEEEeccccccccccCCCCCcccCCCCCC-----------------------------CCCcchhhhh
Confidence 999999873335999999999998643 2334433333 2899999999
Q ss_pred HHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHH
Q psy17528 280 AEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAAL 357 (366)
Q Consensus 280 ~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~ 357 (366)
++.+++++. +|++++|.|.++-|||.+.|- .-++.++..++.|.+.+++|+|.+.+||+||+|.++|+...
T Consensus 159 sD~lVray~~TYglp~~ItrcSNNYGPyqfpE-------KlIP~~I~nal~g~~lpvYGdG~~iRDWl~VeDh~~ai~~V 231 (340)
T COG1088 159 SDLLVRAYVRTYGLPATITRCSNNYGPYQFPE-------KLIPLMIINALLGKPLPVYGDGLQIRDWLYVEDHCRAIDLV 231 (340)
T ss_pred HHHHHHHHHHHcCCceEEecCCCCcCCCcCch-------hhhHHHHHHHHcCCCCceecCCcceeeeEEeHhHHHHHHHH
Confidence 999999999 999999999999999998752 12355778889999999999999999999999999999988
Q ss_pred HHhhh
Q psy17528 358 AWYFL 362 (366)
Q Consensus 358 ~~~~~ 362 (366)
+++..
T Consensus 232 l~kg~ 236 (340)
T COG1088 232 LTKGK 236 (340)
T ss_pred HhcCc
Confidence 87643
|
|
| >KOG1502|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-27 Score=227.27 Aligned_cols=235 Identities=21% Similarity=0.262 Sum_probs=183.8
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
.+++|+||||+||||+++++.||++| +.|...+|+++.....+-+.+
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rG---Y~V~gtVR~~~~~k~~~~L~~------------------------------ 51 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRG---YTVRGTVRDPEDEKKTEHLRK------------------------------ 51 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCC---CEEEEEEcCcchhhhHHHHHh------------------------------
Confidence 57899999999999999999999999 899999999875433222322
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhh--HHHHHHHHHHHHHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEH--IRTAYNINVKGTQTI 204 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~--~~~~~~~nv~~~~~l 204 (366)
.+...+++..+.+|+.+.+ .+.++++++|.|||+|..+.++.. ..++.+..+.|+.++
T Consensus 52 --------------l~~a~~~l~l~~aDL~d~~------sf~~ai~gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nV 111 (327)
T KOG1502|consen 52 --------------LEGAKERLKLFKADLLDEG------SFDKAIDGCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNV 111 (327)
T ss_pred --------------cccCcccceEEeccccccc------hHHHHHhCCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHH
Confidence 3334467899999999998 899999999999999998776443 457999999999999
Q ss_pred HHHHHhcCCCcEEEEeeCcceecCc-c------ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHH
Q psy17528 205 LALAKRMKGLKSFVHVSTAYCNCDR-K------FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTK 277 (366)
Q Consensus 205 l~~a~~~~~~~~~v~iSS~~~~~~~-~------~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK 277 (366)
+++|++.+.++|+|+.||+.+...+ + .++|+.+..+ ++-..+. +-|..+|
T Consensus 112 L~ac~~~~sVkrvV~TSS~aAv~~~~~~~~~~~vvdE~~wsd~----------------~~~~~~~-------~~Y~~sK 168 (327)
T KOG1502|consen 112 LEACKKTKSVKRVVYTSSTAAVRYNGPNIGENSVVDEESWSDL----------------DFCRCKK-------LWYALSK 168 (327)
T ss_pred HHHHhccCCcceEEEeccHHHhccCCcCCCCCcccccccCCcH----------------HHHHhhH-------HHHHHHH
Confidence 9999998779999999999666433 1 2334332221 1111111 6899999
Q ss_pred HHHHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHH
Q psy17528 278 ATAEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMA 355 (366)
Q Consensus 278 ~~~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~ 355 (366)
..+|+..+++. .+++.+++.|+.|+||...+. .+....++.+.++|...... +....||||+|||.|.+
T Consensus 169 ~lAEkaAw~fa~e~~~~lv~inP~lV~GP~l~~~------l~~s~~~~l~~i~G~~~~~~---n~~~~~VdVrDVA~AHv 239 (327)
T KOG1502|consen 169 TLAEKAAWEFAKENGLDLVTINPGLVFGPGLQPS------LNSSLNALLKLIKGLAETYP---NFWLAFVDVRDVALAHV 239 (327)
T ss_pred HHHHHHHHHHHHhCCccEEEecCCceECCCcccc------cchhHHHHHHHHhcccccCC---CCceeeEeHHHHHHHHH
Confidence 99999999998 889999999999999987652 23335567777777544332 33455999999999999
Q ss_pred HHHHhhhhcCC
Q psy17528 356 ALAWYFLFSCR 366 (366)
Q Consensus 356 ~~~~~~~~~~~ 366 (366)
.|++.+..+||
T Consensus 240 ~a~E~~~a~GR 250 (327)
T KOG1502|consen 240 LALEKPSAKGR 250 (327)
T ss_pred HHHcCcccCce
Confidence 99999998886
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.1e-27 Score=233.16 Aligned_cols=253 Identities=17% Similarity=0.132 Sum_probs=171.4
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHh-CCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRC-CPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~-g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+.|+|||||||||||++|+++|+++ | ++|++++|+.... .+... .
T Consensus 12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g---~~V~~l~r~~~~~------~~l~~---------~--------------- 58 (386)
T PLN02427 12 IKPLTICMIGAGGFIGSHLCEKLMTETP---HKVLALDVYNDKI------KHLLE---------P--------------- 58 (386)
T ss_pred ccCcEEEEECCcchHHHHHHHHHHhcCC---CEEEEEecCchhh------hhhhc---------c---------------
Confidence 34578999999999999999999998 4 6888998864321 01000 0
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh---hhhHHHHHHHHHHHH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF---DEHIRTAYNINVKGT 201 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~---~~~~~~~~~~nv~~~ 201 (366)
.......+++++.+|+.+.. .+..+++++|+|||+|+.... .....+.+..|+.++
T Consensus 59 ---------------~~~~~~~~~~~~~~Dl~d~~------~l~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt 117 (386)
T PLN02427 59 ---------------DTVPWSGRIQFHRINIKHDS------RLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDA 117 (386)
T ss_pred ---------------ccccCCCCeEEEEcCCCChH------HHHHHhhcCCEEEEcccccChhhhhhChHHHHHHHHHHH
Confidence 00112347899999999977 788888899999999997542 223345667899999
Q ss_pred HHHHHHHHhcCCCcEEEEeeCcceecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHH
Q psy17528 202 QTILALAKRMKGLKSFVHVSTAYCNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKAT 279 (366)
Q Consensus 202 ~~ll~~a~~~~~~~~~v~iSS~~~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~ 279 (366)
.++++++++. + ++|||+||..+|+... +++|+....+..+ .+. ..|...+..........+.|+.+|..
T Consensus 118 ~~ll~aa~~~-~-~r~v~~SS~~vYg~~~~~~~~e~~p~~~~~~--~~~-----~~e~~~~~~~~~~~~~~~~Y~~sK~~ 188 (386)
T PLN02427 118 LPVVKYCSEN-N-KRLIHFSTCEVYGKTIGSFLPKDHPLRQDPA--FYV-----LKEDESPCIFGSIEKQRWSYACAKQL 188 (386)
T ss_pred HHHHHHHHhc-C-CEEEEEeeeeeeCCCcCCCCCcccccccccc--ccc-----ccccccccccCCCCccccchHHHHHH
Confidence 9999999875 4 7999999999997532 2333321111000 000 00000000000011123689999999
Q ss_pred HHHHHHHhc--CCCCEEEEecCccccCCCCCCCccc---cccch-HHHHHHHHhcCcceeecCCCCcccCcccHHHHHHH
Q psy17528 280 AEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWI---KGFNG-VMALALGAGTGLIRVVQTDPNISMDVVPGDRVINA 353 (366)
Q Consensus 280 ~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~---~~~~~-~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~a 353 (366)
+|+++..+. ++++++++||++||||+....++.. ..... +..++..+..+.+..++++++..++|+||+|+|++
T Consensus 189 ~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~g~g~~~r~~i~V~Dva~a 268 (386)
T PLN02427 189 IERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRREPLKLVDGGQSQRTFVYIKDAIEA 268 (386)
T ss_pred HHHHHHHHHhhcCCceEEecccceeCCCCCccccccccccccchHHHHHHHHHhcCCCeEEECCCCceECcEeHHHHHHH
Confidence 999998866 6899999999999999864322110 01111 23344566677777778888888999999999999
Q ss_pred HHHHHHhh
Q psy17528 354 MAALAWYF 361 (366)
Q Consensus 354 i~~~~~~~ 361 (366)
++.+++++
T Consensus 269 i~~al~~~ 276 (386)
T PLN02427 269 VLLMIENP 276 (386)
T ss_pred HHHHHhCc
Confidence 99999875
|
|
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-27 Score=215.81 Aligned_cols=218 Identities=29% Similarity=0.349 Sum_probs=176.2
Q ss_pred EEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccccc
Q psy17528 51 IFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNYFN 130 (366)
Q Consensus 51 ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (366)
|||||||||||++++++|+++| +.|+.+.|+.........
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g---~~v~~~~~~~~~~~~~~~------------------------------------- 40 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKG---HEVIVLSRSSNSESFEEK------------------------------------- 40 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---TEEEEEESCSTGGHHHHH-------------------------------------
T ss_pred EEEEccCCHHHHHHHHHHHHcC---Cccccccccccccccccc-------------------------------------
Confidence 7999999999999999999998 778888888654311000
Q ss_pred hhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCc--CEEEEcCcccCh---hhhHHHHHHHHHHHHHHHH
Q psy17528 131 DAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQT--TIIFHIAATVRF---DEHIRTAYNINVKGTQTIL 205 (366)
Q Consensus 131 ~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~--d~Vih~a~~~~~---~~~~~~~~~~nv~~~~~ll 205 (366)
..++.++.+|+.+.+ .+.+++++. |+|||+|+.... .......++.|+.++.+++
T Consensus 41 --------------~~~~~~~~~dl~~~~------~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~ll 100 (236)
T PF01370_consen 41 --------------KLNVEFVIGDLTDKE------QLEKLLEKANIDVVIHLAAFSSNPESFEDPEEIIEANVQGTRNLL 100 (236)
T ss_dssp --------------HTTEEEEESETTSHH------HHHHHHHHHTESEEEEEBSSSSHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred --------------cceEEEEEeeccccc------cccccccccCceEEEEeeccccccccccccccccccccccccccc
Confidence 027889999999877 788888754 999999998632 2355678889999999999
Q ss_pred HHHHhcCCCcEEEEeeCcceecCc--cccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHH
Q psy17528 206 ALAKRMKGLKSFVHVSTAYCNCDR--KFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDL 283 (366)
Q Consensus 206 ~~a~~~~~~~~~v~iSS~~~~~~~--~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~ 283 (366)
+++.+. ++++++++||+.+|+.. .+++|+....|. +.|+.+|...|++
T Consensus 101 ~~~~~~-~~~~~i~~sS~~~y~~~~~~~~~e~~~~~~~-----------------------------~~Y~~~K~~~e~~ 150 (236)
T PF01370_consen 101 EAAREA-GVKRFIFLSSASVYGDPDGEPIDEDSPINPL-----------------------------SPYGASKRAAEEL 150 (236)
T ss_dssp HHHHHH-TTSEEEEEEEGGGGTSSSSSSBETTSGCCHS-----------------------------SHHHHHHHHHHHH
T ss_pred cccccc-ccccccccccccccccccccccccccccccc-----------------------------ccccccccccccc
Confidence 999987 66999999999888765 345565544443 7799999999999
Q ss_pred HHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhh
Q psy17528 284 VRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 284 l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
++.+. .+++++++||+.||||. .+. ... ......++..+.+|.+..++++++..++|+|++|+|++++.+++++
T Consensus 151 ~~~~~~~~~~~~~~~R~~~vyG~~-~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~ 226 (236)
T PF01370_consen 151 LRDYAKKYGLRVTILRPPNVYGPG-NPN-NNS--SSFLPSLIRQALKGKPIKIPGDGSQVRDFIHVDDLAEAIVAALENP 226 (236)
T ss_dssp HHHHHHHHTSEEEEEEESEEESTT-SSS-SST--SSHHHHHHHHHHTTSSEEEESTSSCEEEEEEHHHHHHHHHHHHHHS
T ss_pred cccccccccccccccccccccccc-ccc-ccc--ccccchhhHHhhcCCcccccCCCCCccceEEHHHHHHHHHHHHhCC
Confidence 99887 68999999999999998 111 111 1223567888889998888899999999999999999999999988
Q ss_pred h
Q psy17528 362 L 362 (366)
Q Consensus 362 ~ 362 (366)
.
T Consensus 227 ~ 227 (236)
T PF01370_consen 227 K 227 (236)
T ss_dssp C
T ss_pred C
Confidence 6
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.9e-27 Score=229.78 Aligned_cols=230 Identities=14% Similarity=0.124 Sum_probs=168.5
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHh-CCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRC-CPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~-g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
+|+|||||||||||++|+++|++. | +.|++++|+... ....
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~---~~V~~~~r~~~~------~~~~----------------------------- 42 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTD---WEVYGMDMQTDR------LGDL----------------------------- 42 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCC---CeEEEEeCcHHH------HHHh-----------------------------
Confidence 368999999999999999999986 4 789999886321 0000
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCC-cCCCCCCHHHHHHHHhCcCEEEEcCcccCh---hhhHHHHHHHHHHHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLE-ADTFGLSARDEELLISQTTIIFHIAATVRF---DEHIRTAYNINVKGTQ 202 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~-~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~---~~~~~~~~~~nv~~~~ 202 (366)
.. ...++++.+|+. +.. .+..+++++|+|||+|+.... ..++...+++|+.++.
T Consensus 43 --------------~~--~~~~~~~~~Dl~~~~~------~~~~~~~~~d~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~ 100 (347)
T PRK11908 43 --------------VN--HPRMHFFEGDITINKE------WIEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANL 100 (347)
T ss_pred --------------cc--CCCeEEEeCCCCCCHH------HHHHHHcCCCEEEECcccCChHHhhcCcHHHHHHHHHHHH
Confidence 00 146889999997 443 566778899999999997542 3345678899999999
Q ss_pred HHHHHHHhcCCCcEEEEeeCcceecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHH
Q psy17528 203 TILALAKRMKGLKSFVHVSTAYCNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATA 280 (366)
Q Consensus 203 ~ll~~a~~~~~~~~~v~iSS~~~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~ 280 (366)
+++++|++. + ++|||+||+.+|+... ++.|+..+.... +.....+.|+.+|..+
T Consensus 101 ~ll~aa~~~-~-~~~v~~SS~~vyg~~~~~~~~ee~~~~~~~----------------------~~~~p~~~Y~~sK~~~ 156 (347)
T PRK11908 101 PIVRSAVKY-G-KHLVFPSTSEVYGMCPDEEFDPEASPLVYG----------------------PINKPRWIYACSKQLM 156 (347)
T ss_pred HHHHHHHhc-C-CeEEEEecceeeccCCCcCcCccccccccC----------------------cCCCccchHHHHHHHH
Confidence 999999986 4 6999999999887532 233332111000 0011126899999999
Q ss_pred HHHHHHhc--CCCCEEEEecCccccCCCCCCCcccccc-chHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHH
Q psy17528 281 EDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGF-NGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAAL 357 (366)
Q Consensus 281 E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~ 357 (366)
|.+++.+. ++++++++||++||||+..+......+. ..+..++..+..+....+.+++++.++|+|++|++++++.+
T Consensus 157 e~~~~~~~~~~~~~~~ilR~~~v~Gp~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~r~~i~v~D~a~a~~~~ 236 (347)
T PRK11908 157 DRVIWAYGMEEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGEPISLVDGGSQKRAFTDIDDGIDALMKI 236 (347)
T ss_pred HHHHHHHHHHcCCCeEEEeeeeeeCCCccCCCccccCCcchHHHHHHHHhCCCceEEecCCceeeccccHHHHHHHHHHH
Confidence 99999876 7999999999999999865421111111 12345666777787777777888999999999999999999
Q ss_pred HHhh
Q psy17528 358 AWYF 361 (366)
Q Consensus 358 ~~~~ 361 (366)
++.+
T Consensus 237 ~~~~ 240 (347)
T PRK11908 237 IENK 240 (347)
T ss_pred HhCc
Confidence 9875
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=223.65 Aligned_cols=230 Identities=19% Similarity=0.227 Sum_probs=163.1
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
++++|||||||||||++++++|++.| ++|++++|+.......+.+. .
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~------------~------------------ 49 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRG---YTVKATVRDPNDPKKTEHLL------------A------------------ 49 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCC---CEEEEEEcCCCchhhHHHHH------------h------------------
Confidence 46899999999999999999999998 78999998754211111100 0
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh-hhH-HHHHHHHHHHHHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD-EHI-RTAYNINVKGTQTI 204 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~-~~~-~~~~~~nv~~~~~l 204 (366)
.....+++.++.+|+.++. .+..+++++|+|||+|+..... ... ...+++|+.++.++
T Consensus 50 --------------~~~~~~~~~~~~~Dl~~~~------~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~l 109 (322)
T PLN02662 50 --------------LDGAKERLHLFKANLLEEG------SFDSVVDGCEGVFHTASPFYHDVTDPQAELIDPAVKGTLNV 109 (322)
T ss_pred --------------ccCCCCceEEEeccccCcc------hHHHHHcCCCEEEEeCCcccCCCCChHHHHHHHHHHHHHHH
Confidence 0011247889999999987 7888889999999999965321 223 36789999999999
Q ss_pred HHHHHhcCCCcEEEEeeCcc--eecCcc-----ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHH
Q psy17528 205 LALAKRMKGLKSFVHVSTAY--CNCDRK-----FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTK 277 (366)
Q Consensus 205 l~~a~~~~~~~~~v~iSS~~--~~~~~~-----~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK 277 (366)
++++.+..++++||++||+. +|+... +++|+....|. ......+.|+.+|
T Consensus 110 l~a~~~~~~~~~~v~~SS~~~~~y~~~~~~~~~~~~E~~~~~p~-----------------------~~~~~~~~Y~~sK 166 (322)
T PLN02662 110 LRSCAKVPSVKRVVVTSSMAAVAYNGKPLTPDVVVDETWFSDPA-----------------------FCEESKLWYVLSK 166 (322)
T ss_pred HHHHHhCCCCCEEEEccCHHHhcCCCcCCCCCCcCCcccCCChh-----------------------HhhcccchHHHHH
Confidence 99988754678999999975 354221 23333222111 1111225799999
Q ss_pred HHHHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHH
Q psy17528 278 ATAEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMA 355 (366)
Q Consensus 278 ~~~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~ 355 (366)
..+|++++.+. .+++++++||+++|||...+... ....++.....+... .+...++|+||+|+|++++
T Consensus 167 ~~~E~~~~~~~~~~~~~~~~lRp~~v~Gp~~~~~~~------~~~~~~~~~~~~~~~----~~~~~~~~i~v~Dva~a~~ 236 (322)
T PLN02662 167 TLAEEAAWKFAKENGIDMVTINPAMVIGPLLQPTLN------TSAEAILNLINGAQT----FPNASYRWVDVRDVANAHI 236 (322)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCcccCCCCCCCCC------chHHHHHHHhcCCcc----CCCCCcCeEEHHHHHHHHH
Confidence 99999998765 68999999999999997653211 112344445554321 2346789999999999999
Q ss_pred HHHHhhh
Q psy17528 356 ALAWYFL 362 (366)
Q Consensus 356 ~~~~~~~ 362 (366)
.+++.+.
T Consensus 237 ~~~~~~~ 243 (322)
T PLN02662 237 QAFEIPS 243 (322)
T ss_pred HHhcCcC
Confidence 9998754
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=225.93 Aligned_cols=237 Identities=20% Similarity=0.230 Sum_probs=163.7
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+.+++||||||+||||++|+++|++.| ++|++++|+.........+..
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~----------------------------- 54 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLLLQKG---YAVNTTVRDPENQKKIAHLRA----------------------------- 54 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHHHHCC---CEEEEEECCCCCHHHHHHHHh-----------------------------
Confidence 347899999999999999999999998 788888887542110000000
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh-hh-HHHHHHHHHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD-EH-IRTAYNINVKGTQT 203 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~-~~-~~~~~~~nv~~~~~ 203 (366)
.. ...++.++.+|+.+.+ .+.++++++|+|||+|+..... .. ....+++|+.++.+
T Consensus 55 ---------------~~-~~~~~~~~~~Dl~d~~------~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~ 112 (338)
T PLN00198 55 ---------------LQ-ELGDLKIFGADLTDEE------SFEAPIAGCDLVFHVATPVNFASEDPENDMIKPAIQGVHN 112 (338)
T ss_pred ---------------cC-CCCceEEEEcCCCChH------HHHHHHhcCCEEEEeCCCCccCCCChHHHHHHHHHHHHHH
Confidence 00 0135889999999987 7888888999999999965322 22 23567899999999
Q ss_pred HHHHHHhcCCCcEEEEeeCcceecCc------cccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHH
Q psy17528 204 ILALAKRMKGLKSFVHVSTAYCNCDR------KFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTK 277 (366)
Q Consensus 204 ll~~a~~~~~~~~~v~iSS~~~~~~~------~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK 277 (366)
+++++.+..++++||++||+.+|+.. .+++|+..... . ..+. .....++|+.+|
T Consensus 113 ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~----~--------------~~~~--~~~p~~~Y~~sK 172 (338)
T PLN00198 113 VLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDV----E--------------FLTS--EKPPTWGYPASK 172 (338)
T ss_pred HHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCch----h--------------hhhh--cCCccchhHHHH
Confidence 99999876468899999999888642 12344321100 0 0000 001126799999
Q ss_pred HHHHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecC-CCC----cccCcccHHHH
Q psy17528 278 ATAEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQT-DPN----ISMDVVPGDRV 350 (366)
Q Consensus 278 ~~~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~-~~~----~~~~~v~vdDv 350 (366)
..+|.+++.+. ++++++++||++||||+..+. . .....++.....+....+.+ .+. ..+||+||+|+
T Consensus 173 ~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~~~~~---~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~V~D~ 246 (338)
T PLN00198 173 TLAEKAAWKFAEENNIDLITVIPTLMAGPSLTSD---I---PSSLSLAMSLITGNEFLINGLKGMQMLSGSISITHVEDV 246 (338)
T ss_pred HHHHHHHHHHHHhcCceEEEEeCCceECCCccCC---C---CCcHHHHHHHHcCCccccccccccccccCCcceeEHHHH
Confidence 99999999876 689999999999999986421 1 11122333445555444433 222 23799999999
Q ss_pred HHHHHHHHHhhh
Q psy17528 351 INAMAALAWYFL 362 (366)
Q Consensus 351 a~ai~~~~~~~~ 362 (366)
|++++.+++...
T Consensus 247 a~a~~~~~~~~~ 258 (338)
T PLN00198 247 CRAHIFLAEKES 258 (338)
T ss_pred HHHHHHHhhCcC
Confidence 999999988653
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=227.56 Aligned_cols=224 Identities=21% Similarity=0.198 Sum_probs=165.9
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccE-EEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRK-IILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~-V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
+++|||||||||||++++++|++.| .. |+++.|...... ...+.+
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g---~~~v~~~~~~~~~~~-~~~~~~------------------------------ 46 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINET---SDAVVVVDKLTYAGN-LMSLAP------------------------------ 46 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcC---CCEEEEEecCccccc-hhhhhh------------------------------
Confidence 3689999999999999999999998 44 334444321110 000000
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccChh---hhHHHHHHHHHHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRFD---EHIRTAYNINVKGT 201 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~~---~~~~~~~~~nv~~~ 201 (366)
. .....+.++.+|+.+.+ .+.++++ ++|+|||+||..... ..+...+++|+.++
T Consensus 47 --------------~-~~~~~~~~~~~Dl~d~~------~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~N~~gt 105 (355)
T PRK10217 47 --------------V-AQSERFAFEKVDICDRA------ELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGT 105 (355)
T ss_pred --------------c-ccCCceEEEECCCcChH------HHHHHHhhcCCCEEEECCcccCcchhhhChHHHHHHhhHHH
Confidence 0 01136788999999987 7888777 489999999976432 34577899999999
Q ss_pred HHHHHHHHhc--------CCCcEEEEeeCcceecCc----cccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCC
Q psy17528 202 QTILALAKRM--------KGLKSFVHVSTAYCNCDR----KFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGK 269 (366)
Q Consensus 202 ~~ll~~a~~~--------~~~~~~v~iSS~~~~~~~----~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (366)
.++++++.+. .++++||++||..+|+.. .+++|+....|.
T Consensus 106 ~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~E~~~~~p~---------------------------- 157 (355)
T PRK10217 106 YTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPS---------------------------- 157 (355)
T ss_pred HHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCCCCCcCCCCCCCCC----------------------------
Confidence 9999999762 246799999999888642 234554332222
Q ss_pred CchHHHHHHHHHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccH
Q psy17528 270 PNSYTLTKATAEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPG 347 (366)
Q Consensus 270 ~~~Y~~sK~~~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~v 347 (366)
+.|+.+|..+|.+++.+. .+++++++||++||||+..+. . .+..++..+..+....++++++..++|+||
T Consensus 158 -s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~-~------~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v 229 (355)
T PRK10217 158 -SPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHFPE-K------LIPLMILNALAGKPLPVYGNGQQIRDWLYV 229 (355)
T ss_pred -ChhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCcc-c------HHHHHHHHHhcCCCceEeCCCCeeeCcCcH
Confidence 789999999999998875 789999999999999986431 1 124455666777777778889999999999
Q ss_pred HHHHHHHHHHHHhhh
Q psy17528 348 DRVINAMAALAWYFL 362 (366)
Q Consensus 348 dDva~ai~~~~~~~~ 362 (366)
+|+|++++.+++...
T Consensus 230 ~D~a~a~~~~~~~~~ 244 (355)
T PRK10217 230 EDHARALYCVATTGK 244 (355)
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999887643
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-26 Score=221.38 Aligned_cols=231 Identities=19% Similarity=0.215 Sum_probs=165.0
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
.+++|||||||||||++++++|++.| ++|+++.|+..... ++.+.+.
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~---~~~~~~~--------------------------- 50 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRG---YTVKATVRDLTDRK---KTEHLLA--------------------------- 50 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEECCCcchH---HHHHHHh---------------------------
Confidence 46899999999999999999999998 78998999764321 1111110
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh--hhHHHHHHHHHHHHHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD--EHIRTAYNINVKGTQTI 204 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~--~~~~~~~~~nv~~~~~l 204 (366)
......++.++.+|+.+.+ .+..+++++|+|||+|+..... ......++.|+.++.++
T Consensus 51 --------------~~~~~~~~~~~~~Dl~~~~------~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~l 110 (322)
T PLN02986 51 --------------LDGAKERLKLFKADLLEES------SFEQAIEGCDAVFHTASPVFFTVKDPQTELIDPALKGTINV 110 (322)
T ss_pred --------------ccCCCCceEEEecCCCCcc------hHHHHHhCCCEEEEeCCCcCCCCCCchhhhhHHHHHHHHHH
Confidence 0011246889999999987 7888889999999999975322 22245788999999999
Q ss_pred HHHHHhcCCCcEEEEeeCccee--cCc-----cccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHH
Q psy17528 205 LALAKRMKGLKSFVHVSTAYCN--CDR-----KFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTK 277 (366)
Q Consensus 205 l~~a~~~~~~~~~v~iSS~~~~--~~~-----~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK 277 (366)
++++++..++++||++||..++ +.. ..++|+....|. ......+.|+.+|
T Consensus 111 l~~~~~~~~v~rvV~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~-----------------------~~~~~~~~Y~~sK 167 (322)
T PLN02986 111 LNTCKETPSVKRVILTSSTAAVLFRQPPIEANDVVDETFFSDPS-----------------------LCRETKNWYPLSK 167 (322)
T ss_pred HHHHHhcCCccEEEEecchhheecCCccCCCCCCcCcccCCChH-----------------------HhhccccchHHHH
Confidence 9999875468899999998654 221 113333222110 0001126799999
Q ss_pred HHHHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHH
Q psy17528 278 ATAEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMA 355 (366)
Q Consensus 278 ~~~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~ 355 (366)
..+|.+++.+. ++++++++||++||||...+...+ ...++.....+... + +...++||||+|+|++++
T Consensus 168 ~~aE~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~------~~~~~~~~~~g~~~--~--~~~~~~~v~v~Dva~a~~ 237 (322)
T PLN02986 168 ILAENAAWEFAKDNGIDMVVLNPGFICGPLLQPTLNF------SVELIVDFINGKNL--F--NNRFYRFVDVRDVALAHI 237 (322)
T ss_pred HHHHHHHHHHHHHhCCeEEEEcccceeCCCCCCCCCc------cHHHHHHHHcCCCC--C--CCcCcceeEHHHHHHHHH
Confidence 99999998876 689999999999999986542111 12344555555532 2 345689999999999999
Q ss_pred HHHHhhhh
Q psy17528 356 ALAWYFLF 363 (366)
Q Consensus 356 ~~~~~~~~ 363 (366)
.+++.+..
T Consensus 238 ~al~~~~~ 245 (322)
T PLN02986 238 KALETPSA 245 (322)
T ss_pred HHhcCccc
Confidence 99987643
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-26 Score=224.25 Aligned_cols=224 Identities=19% Similarity=0.220 Sum_probs=167.8
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
++++++||||||+||||+++++.|++.| ++|++++|+...... ..+.+
T Consensus 1 ~~~~k~ilItGatG~IG~~l~~~L~~~G---~~V~~~~r~~~~~~~---~~~~~-------------------------- 48 (349)
T TIGR02622 1 FWQGKKVLVTGHTGFKGSWLSLWLLELG---AEVYGYSLDPPTSPN---LFELL-------------------------- 48 (349)
T ss_pred CcCCCEEEEECCCChhHHHHHHHHHHCC---CEEEEEeCCCccchh---HHHHH--------------------------
Confidence 4578999999999999999999999998 789999987543211 00000
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccCh---hhhHHHHHHHHHH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRF---DEHIRTAYNINVK 199 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~---~~~~~~~~~~nv~ 199 (366)
. ....+.++.+|+.+.+ .+.++++ ++|+|||+|+.... ..++...+++|+.
T Consensus 49 ----------------~--~~~~~~~~~~Dl~~~~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~ 104 (349)
T TIGR02622 49 ----------------N--LAKKIEDHFGDIRDAA------KLRKAIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVM 104 (349)
T ss_pred ----------------h--hcCCceEEEccCCCHH------HHHHHHhhcCCCEEEECCcccccccchhCHHHHHHHhHH
Confidence 0 0135678899999876 7888877 46999999996432 2345678899999
Q ss_pred HHHHHHHHHHhcCCCcEEEEeeCcceecCcc---ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHH
Q psy17528 200 GTQTILALAKRMKGLKSFVHVSTAYCNCDRK---FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLT 276 (366)
Q Consensus 200 ~~~~ll~~a~~~~~~~~~v~iSS~~~~~~~~---~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~s 276 (366)
++.++++++.+.+.+++||++||+.+|+... ++.|.....| .++|+.+
T Consensus 105 g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~~e~~~~~p-----------------------------~~~Y~~s 155 (349)
T TIGR02622 105 GTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEWVWGYRETDPLGG-----------------------------HDPYSSS 155 (349)
T ss_pred HHHHHHHHHHhcCCCCEEEEEechhhhCCCCCCCCCccCCCCCC-----------------------------CCcchhH
Confidence 9999999998763378999999998886532 2333332222 2789999
Q ss_pred HHHHHHHHHHhc---------CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccH
Q psy17528 277 KATAEDLVRQVG---------HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPG 347 (366)
Q Consensus 277 K~~~E~~l~~~~---------~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~v 347 (366)
|...|.+++.+. ++++++++||++||||+...... ....++..+..|....+ ++++..+||+|+
T Consensus 156 K~~~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~------~~~~~~~~~~~g~~~~~-~~g~~~rd~i~v 228 (349)
T TIGR02622 156 KACAELVIASYRSSFFGVANFHGIKIASARAGNVIGGGDWAEDR------LIPDVIRAFSSNKIVII-RNPDATRPWQHV 228 (349)
T ss_pred HHHHHHHHHHHHHHhhcccccCCCcEEEEccCcccCCCcchhhh------hhHHHHHHHhcCCCeEE-CCCCcccceeeH
Confidence 999999998764 18999999999999997521111 12456666777776665 467899999999
Q ss_pred HHHHHHHHHHHHh
Q psy17528 348 DRVINAMAALAWY 360 (366)
Q Consensus 348 dDva~ai~~~~~~ 360 (366)
+|+|+|++.+++.
T Consensus 229 ~D~a~a~~~~~~~ 241 (349)
T TIGR02622 229 LEPLSGYLLLAEK 241 (349)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988875
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=8e-26 Score=219.28 Aligned_cols=229 Identities=19% Similarity=0.228 Sum_probs=164.3
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+++||||||+||||++++++|++.| ++|++++|+...... ..+.+.
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G---~~V~~~~r~~~~~~~---~~~~~~---------------------------- 50 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRG---YTINATVRDPKDRKK---TDHLLA---------------------------- 50 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCC---CEEEEEEcCCcchhh---HHHHHh----------------------------
Confidence 6899999999999999999999998 788888887543211 111000
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh---hhHHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD---EHIRTAYNINVKGTQTI 204 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~---~~~~~~~~~nv~~~~~l 204 (366)
......++.++.+|+.+.+ .+.++++++|+|||+||..... ..+...+++|+.++.++
T Consensus 51 -------------~~~~~~~~~~~~~D~~d~~------~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~g~~~l 111 (325)
T PLN02989 51 -------------LDGAKERLKLFKADLLDEG------SFELAIDGCETVFHTASPVAITVKTDPQVELINPAVNGTINV 111 (325)
T ss_pred -------------ccCCCCceEEEeCCCCCch------HHHHHHcCCCEEEEeCCCCCCCCCCChHHHHHHHHHHHHHHH
Confidence 0011246889999999987 7888888999999999964322 24567889999999999
Q ss_pred HHHHHhcCCCcEEEEeeCcceecCcc-------ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHH
Q psy17528 205 LALAKRMKGLKSFVHVSTAYCNCDRK-------FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTK 277 (366)
Q Consensus 205 l~~a~~~~~~~~~v~iSS~~~~~~~~-------~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK 277 (366)
++++.+..+.++||++||..+++... +++|+....|.. .....+.|+.+|
T Consensus 112 l~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~-----------------------~~~~~~~Y~~sK 168 (325)
T PLN02989 112 LRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSF-----------------------AEERKQWYVLSK 168 (325)
T ss_pred HHHHHHcCCceEEEEecchhheecCCccCCCCCccCcCCCCchhH-----------------------hcccccchHHHH
Confidence 99998753567999999987664321 234443332210 001126799999
Q ss_pred HHHHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHH
Q psy17528 278 ATAEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMA 355 (366)
Q Consensus 278 ~~~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~ 355 (366)
..+|++++.+. .+++++++||++||||+..+...+ ...++..+..+.... . ...++|+||+|+|++++
T Consensus 169 ~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~------~~~~i~~~~~~~~~~--~--~~~r~~i~v~Dva~a~~ 238 (325)
T PLN02989 169 TLAEDAAWRFAKDNEIDLIVLNPGLVTGPILQPTLNF------SVAVIVELMKGKNPF--N--TTHHRFVDVRDVALAHV 238 (325)
T ss_pred HHHHHHHHHHHHHcCCeEEEEcCCceeCCCCCCCCCc------hHHHHHHHHcCCCCC--C--CcCcCeeEHHHHHHHHH
Confidence 99999998866 689999999999999987643211 123445555554321 1 34589999999999999
Q ss_pred HHHHhhh
Q psy17528 356 ALAWYFL 362 (366)
Q Consensus 356 ~~~~~~~ 362 (366)
.+++.+.
T Consensus 239 ~~l~~~~ 245 (325)
T PLN02989 239 KALETPS 245 (325)
T ss_pred HHhcCcc
Confidence 9988754
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.6e-26 Score=221.94 Aligned_cols=227 Identities=19% Similarity=0.195 Sum_probs=163.2
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
++++||||||+||||++++++|++.| ++|++++|+.+.... ..+..
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G---~~V~~~~r~~~~~~~-~~~~~------------------------------ 54 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERG---YTVKGTVRNPDDPKN-THLRE------------------------------ 54 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCc---CEEEEEeCCchhhhH-HHHHH------------------------------
Confidence 47899999999999999999999998 889999997532110 00000
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILA 206 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll~ 206 (366)
......++.++.+|+.+.. .+..++.++|+|||+|+... ..+...++.|+.++.++++
T Consensus 55 --------------~~~~~~~~~~~~~Dl~d~~------~~~~~~~~~d~Vih~A~~~~--~~~~~~~~~nv~gt~~ll~ 112 (342)
T PLN02214 55 --------------LEGGKERLILCKADLQDYE------ALKAAIDGCDGVFHTASPVT--DDPEQMVEPAVNGAKFVIN 112 (342)
T ss_pred --------------hhCCCCcEEEEecCcCChH------HHHHHHhcCCEEEEecCCCC--CCHHHHHHHHHHHHHHHHH
Confidence 0001235888999999977 78888899999999999653 3456788999999999999
Q ss_pred HHHhcCCCcEEEEeeCc-ceecCcc-----ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHH
Q psy17528 207 LAKRMKGLKSFVHVSTA-YCNCDRK-----FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATA 280 (366)
Q Consensus 207 ~a~~~~~~~~~v~iSS~-~~~~~~~-----~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~ 280 (366)
++.+. ++++||++||. .+|+... +++|+...... ......+.|+.+|..+
T Consensus 113 aa~~~-~v~r~V~~SS~~avyg~~~~~~~~~~~E~~~~~~~-----------------------~~~~p~~~Y~~sK~~a 168 (342)
T PLN02214 113 AAAEA-KVKRVVITSSIGAVYMDPNRDPEAVVDESCWSDLD-----------------------FCKNTKNWYCYGKMVA 168 (342)
T ss_pred HHHhc-CCCEEEEeccceeeeccCCCCCCcccCcccCCChh-----------------------hccccccHHHHHHHHH
Confidence 99986 78899999996 4665321 23444211100 0011126899999999
Q ss_pred HHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHH
Q psy17528 281 EDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALA 358 (366)
Q Consensus 281 E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~ 358 (366)
|++++.+. .+++++++||++||||+..+. . ......+.....|.... . ++..++||||+|+|++++.++
T Consensus 169 E~~~~~~~~~~g~~~v~lRp~~vyGp~~~~~--~----~~~~~~~~~~~~g~~~~-~--~~~~~~~i~V~Dva~a~~~al 239 (342)
T PLN02214 169 EQAAWETAKEKGVDLVVLNPVLVLGPPLQPT--I----NASLYHVLKYLTGSAKT-Y--ANLTQAYVDVRDVALAHVLVY 239 (342)
T ss_pred HHHHHHHHHHcCCcEEEEeCCceECCCCCCC--C----CchHHHHHHHHcCCccc-C--CCCCcCeeEHHHHHHHHHHHH
Confidence 99998876 699999999999999986532 1 11111222344454332 2 345789999999999999999
Q ss_pred Hhhh
Q psy17528 359 WYFL 362 (366)
Q Consensus 359 ~~~~ 362 (366)
+.+.
T Consensus 240 ~~~~ 243 (342)
T PLN02214 240 EAPS 243 (342)
T ss_pred hCcc
Confidence 8754
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.3e-26 Score=224.99 Aligned_cols=223 Identities=17% Similarity=0.051 Sum_probs=164.5
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
++|+|||||||||||+++++.|++.| ++|++++|.....
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G---~~V~~v~r~~~~~-------------------------------------- 58 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEG---HYIIASDWKKNEH-------------------------------------- 58 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCC---CEEEEEEeccccc--------------------------------------
Confidence 46899999999999999999999998 7899999864210
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh----hhhHHHHHHHHHHHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF----DEHIRTAYNINVKGTQ 202 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~----~~~~~~~~~~nv~~~~ 202 (366)
.......+.++.+|+.+.+ .+..++.++|+|||+|+.... ..........|+.++.
T Consensus 59 --------------~~~~~~~~~~~~~Dl~d~~------~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~ 118 (370)
T PLN02695 59 --------------MSEDMFCHEFHLVDLRVME------NCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISF 118 (370)
T ss_pred --------------cccccccceEEECCCCCHH------HHHHHHhCCCEEEEcccccCCccccccCchhhHHHHHHHHH
Confidence 0000113567889999866 677777899999999986531 1233456778999999
Q ss_pred HHHHHHHhcCCCcEEEEeeCcceecCccc------cccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHH
Q psy17528 203 TILALAKRMKGLKSFVHVSTAYCNCDRKF------IAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLT 276 (366)
Q Consensus 203 ~ll~~a~~~~~~~~~v~iSS~~~~~~~~~------~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~s 276 (366)
++++++++. ++++|||+||+.+|+.... +.|+.. .|. ...+.|+.+
T Consensus 119 nll~aa~~~-~vk~~V~~SS~~vYg~~~~~~~~~~~~E~~~-~p~--------------------------~p~s~Yg~s 170 (370)
T PLN02695 119 NMLEAARIN-GVKRFFYASSACIYPEFKQLETNVSLKESDA-WPA--------------------------EPQDAYGLE 170 (370)
T ss_pred HHHHHHHHh-CCCEEEEeCchhhcCCccccCcCCCcCcccC-CCC--------------------------CCCCHHHHH
Confidence 999999886 7899999999998875432 222110 011 112789999
Q ss_pred HHHHHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhc-CcceeecCCCCcccCcccHHHHHHH
Q psy17528 277 KATAEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGT-GLIRVVQTDPNISMDVVPGDRVINA 353 (366)
Q Consensus 277 K~~~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~l~~~~~~~~~~v~vdDva~a 353 (366)
|..+|+++..+. .+++++++||++||||+.....+ ....+..++..+.. +....+++++++.++|+|++|++++
T Consensus 171 K~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~g~g~~~r~~i~v~D~a~a 247 (370)
T PLN02695 171 KLATEELCKHYTKDFGIECRIGRFHNIYGPFGTWKGG---REKAPAAFCRKALTSTDEFEMWGDGKQTRSFTFIDECVEG 247 (370)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECCccCCCCCcccc---ccccHHHHHHHHHcCCCCeEEeCCCCeEEeEEeHHHHHHH
Confidence 999999998876 69999999999999997542110 01112445555554 3556678889999999999999999
Q ss_pred HHHHHHhh
Q psy17528 354 MAALAWYF 361 (366)
Q Consensus 354 i~~~~~~~ 361 (366)
++.+++..
T Consensus 248 i~~~~~~~ 255 (370)
T PLN02695 248 VLRLTKSD 255 (370)
T ss_pred HHHHHhcc
Confidence 99887753
|
|
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-26 Score=241.29 Aligned_cols=236 Identities=15% Similarity=0.141 Sum_probs=174.0
Q ss_pred cccCCCCeEEEeCCcchHHHHHHHHHHHh-CCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccc
Q psy17528 43 QEFYKDQTIFITGATGFLGSLLVEKLLRC-CPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGI 121 (366)
Q Consensus 43 ~~~~~~~~ilItGatG~IG~~lv~~Ll~~-g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (366)
-.+.++|+|||||||||||++|+++|++. | ++|++++|...... . +
T Consensus 310 ~~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g---~~V~~l~r~~~~~~------~---------~--------------- 356 (660)
T PRK08125 310 CSAKRRTRVLILGVNGFIGNHLTERLLRDDN---YEVYGLDIGSDAIS------R---------F--------------- 356 (660)
T ss_pred hhhhcCCEEEEECCCchHHHHHHHHHHhCCC---cEEEEEeCCchhhh------h---------h---------------
Confidence 34556789999999999999999999985 5 79999999653210 0 0
Q ss_pred ccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh---hhhHHHHHHHHH
Q psy17528 122 THRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF---DEHIRTAYNINV 198 (366)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~---~~~~~~~~~~nv 198 (366)
. ..++++++.+|+++.. ..+.++++++|+|||+||.... ..+....+++|+
T Consensus 357 -------------------~--~~~~~~~~~gDl~d~~-----~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv 410 (660)
T PRK08125 357 -------------------L--GHPRFHFVEGDISIHS-----EWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDF 410 (660)
T ss_pred -------------------c--CCCceEEEeccccCcH-----HHHHHHhcCCCEEEECccccCchhhccCHHHHHHhhH
Confidence 0 0146889999999864 1246677899999999997543 334567889999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeeCcceecCc--cccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHH
Q psy17528 199 KGTQTILALAKRMKGLKSFVHVSTAYCNCDR--KFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLT 276 (366)
Q Consensus 199 ~~~~~ll~~a~~~~~~~~~v~iSS~~~~~~~--~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~s 276 (366)
.++.++++++.+. + ++|||+||.++|+.. .+++|+....+..+ .....+.|+.+
T Consensus 411 ~~t~~ll~a~~~~-~-~~~V~~SS~~vyg~~~~~~~~E~~~~~~~~p----------------------~~~p~s~Yg~s 466 (660)
T PRK08125 411 EENLKIIRYCVKY-N-KRIIFPSTSEVYGMCTDKYFDEDTSNLIVGP----------------------INKQRWIYSVS 466 (660)
T ss_pred HHHHHHHHHHHhc-C-CeEEEEcchhhcCCCCCCCcCccccccccCC----------------------CCCCccchHHH
Confidence 9999999999986 5 799999999988743 23455432211000 00112689999
Q ss_pred HHHHHHHHHHhc--CCCCEEEEecCccccCCCCCCCcccc-ccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHH
Q psy17528 277 KATAEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIK-GFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINA 353 (366)
Q Consensus 277 K~~~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~a 353 (366)
|..+|++++.+. ++++++++||++||||++........ ....+..++..+..+.+..+++++++.++|+|++|+|++
T Consensus 467 K~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~i~~~i~~~~~~~~i~~~g~g~~~rd~i~v~Dva~a 546 (660)
T PRK08125 467 KQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLVDGGKQKRCFTDIRDGIEA 546 (660)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEEceeeCCCccccccccccccchHHHHHHHhcCCCCeEEeCCCceeeceeeHHHHHHH
Confidence 999999999876 68999999999999998643211000 011235566777777777778888999999999999999
Q ss_pred HHHHHHhh
Q psy17528 354 MAALAWYF 361 (366)
Q Consensus 354 i~~~~~~~ 361 (366)
++.++++.
T Consensus 547 ~~~~l~~~ 554 (660)
T PRK08125 547 LFRIIENK 554 (660)
T ss_pred HHHHHhcc
Confidence 99998864
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=238.31 Aligned_cols=229 Identities=24% Similarity=0.265 Sum_probs=171.1
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
.++++|+|||||||||||++|+++|++.|+. ++|++++|...... .+.+.
T Consensus 2 ~~~~~~~VLVTGatGfIG~~lv~~Ll~~g~~-~~V~~~d~~~~~~~-~~~l~---------------------------- 51 (668)
T PLN02260 2 ATYEPKNILITGAAGFIASHVANRLIRNYPD-YKIVVLDKLDYCSN-LKNLN---------------------------- 51 (668)
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHhCCC-CEEEEEeCCCccch-hhhhh----------------------------
Confidence 3577899999999999999999999998533 67888887531111 00000
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH--hCcCEEEEcCcccChhh---hHHHHHHHHH
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI--SQTTIIFHIAATVRFDE---HIRTAYNINV 198 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~--~~~d~Vih~a~~~~~~~---~~~~~~~~nv 198 (366)
......++.++.+|+.+.+ .+..++ .++|+|||+|+...... ...+.++.|+
T Consensus 52 -----------------~~~~~~~v~~~~~Dl~d~~------~~~~~~~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv 108 (668)
T PLN02260 52 -----------------PSKSSPNFKFVKGDIASAD------LVNYLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNI 108 (668)
T ss_pred -----------------hcccCCCeEEEECCCCChH------HHHHHHhhcCCCEEEECCCccCchhhhhCHHHHHHHHH
Confidence 0001247889999999876 455444 57999999999865432 3456789999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeeCcceecCcccc-----ccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchH
Q psy17528 199 KGTQTILALAKRMKGLKSFVHVSTAYCNCDRKFI-----AEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSY 273 (366)
Q Consensus 199 ~~~~~ll~~a~~~~~~~~~v~iSS~~~~~~~~~~-----~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 273 (366)
.++.++++++++.+.+++|||+||+.+|+..... .|.....| .+.|
T Consensus 109 ~gt~~ll~a~~~~~~vkr~I~~SS~~vyg~~~~~~~~~~~E~~~~~p-----------------------------~~~Y 159 (668)
T PLN02260 109 YGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDADVGNHEASQLLP-----------------------------TNPY 159 (668)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEcchHHhCCCccccccCccccCCCCC-----------------------------CCCc
Confidence 9999999999987458999999999998754311 12211111 2789
Q ss_pred HHHHHHHHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHH
Q psy17528 274 TLTKATAEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVI 351 (366)
Q Consensus 274 ~~sK~~~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva 351 (366)
+.+|..+|++++.+. .+++++++||++||||++.+.. .+..++..+..+....++++++..++|+|++|+|
T Consensus 160 ~~sK~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~~~~~-------~i~~~~~~a~~g~~i~i~g~g~~~r~~ihV~Dva 232 (668)
T PLN02260 160 SATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEK-------LIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVA 232 (668)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECcccccCcCCCccc-------HHHHHHHHHhCCCCeEEecCCCceEeeEEHHHHH
Confidence 999999999998876 6899999999999999864311 1234556667777777888899999999999999
Q ss_pred HHHHHHHHhh
Q psy17528 352 NAMAALAWYF 361 (366)
Q Consensus 352 ~ai~~~~~~~ 361 (366)
++++.+++..
T Consensus 233 ~a~~~~l~~~ 242 (668)
T PLN02260 233 EAFEVVLHKG 242 (668)
T ss_pred HHHHHHHhcC
Confidence 9999988764
|
|
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=227.54 Aligned_cols=221 Identities=19% Similarity=0.178 Sum_probs=166.2
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
+.|+|||||||||||++|+++|+++| ++|++++|..... .+.+...
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G---~~V~~ldr~~~~~--~~~~~~~----------------------------- 164 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRG---DEVIVIDNFFTGR--KENLVHL----------------------------- 164 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCC---CEEEEEeCCCCcc--HhHhhhh-----------------------------
Confidence 46899999999999999999999998 7899998863211 1111000
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh---hhhHHHHHHHHHHHHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF---DEHIRTAYNINVKGTQT 203 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~---~~~~~~~~~~nv~~~~~ 203 (366)
. ...+++++.+|+.+.. +.++|+|||+|+.... ..+....++.|+.++.+
T Consensus 165 --------------~--~~~~~~~~~~Di~~~~-----------~~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~n 217 (436)
T PLN02166 165 --------------F--GNPRFELIRHDVVEPI-----------LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLN 217 (436)
T ss_pred --------------c--cCCceEEEECcccccc-----------ccCCCEEEECceeccchhhccCHHHHHHHHHHHHHH
Confidence 0 0136778888887643 3579999999996532 23556788999999999
Q ss_pred HHHHHHhcCCCcEEEEeeCcceecCcc--ccccccCC--CCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHH
Q psy17528 204 ILALAKRMKGLKSFVHVSTAYCNCDRK--FIAEKFYP--PVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKAT 279 (366)
Q Consensus 204 ll~~a~~~~~~~~~v~iSS~~~~~~~~--~~~e~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~ 279 (366)
++++|++. +. +||++||+++|++.. +.+|+.+. .|..+ .+.|+.+|..
T Consensus 218 Lleaa~~~-g~-r~V~~SS~~VYg~~~~~p~~E~~~~~~~p~~p--------------------------~s~Yg~SK~~ 269 (436)
T PLN02166 218 MLGLAKRV-GA-RFLLTSTSEVYGDPLEHPQKETYWGNVNPIGE--------------------------RSCYDEGKRT 269 (436)
T ss_pred HHHHHHHh-CC-EEEEECcHHHhCCCCCCCCCccccccCCCCCC--------------------------CCchHHHHHH
Confidence 99999986 44 899999999997532 44454321 11111 2689999999
Q ss_pred HHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHH
Q psy17528 280 AEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAAL 357 (366)
Q Consensus 280 ~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~ 357 (366)
+|++++.+. .+++++++||++||||++.... ...+..++.++..+....++++++..++|+||+|+|++++.+
T Consensus 270 aE~~~~~y~~~~~l~~~ilR~~~vYGp~~~~~~-----~~~i~~~i~~~l~~~~i~v~g~g~~~rdfi~V~Dva~ai~~~ 344 (436)
T PLN02166 270 AETLAMDYHRGAGVEVRIARIFNTYGPRMCLDD-----GRVVSNFVAQTIRKQPMTVYGDGKQTRSFQYVSDLVDGLVAL 344 (436)
T ss_pred HHHHHHHHHHHhCCCeEEEEEccccCCCCCCCc-----cchHHHHHHHHhcCCCcEEeCCCCeEEeeEEHHHHHHHHHHH
Confidence 999998876 6899999999999999864211 112355777888888888888889999999999999999998
Q ss_pred HHhh
Q psy17528 358 AWYF 361 (366)
Q Consensus 358 ~~~~ 361 (366)
++..
T Consensus 345 ~~~~ 348 (436)
T PLN02166 345 MEGE 348 (436)
T ss_pred HhcC
Confidence 8753
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-25 Score=218.73 Aligned_cols=234 Identities=19% Similarity=0.196 Sum_probs=159.0
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
.++|||||||||||++++++|++.| ++|++++|+.+... .+.....
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G---~~V~~~~r~~~~~~---~~~~~~~---------------------------- 50 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERG---YTVRATVRDPANVK---KVKHLLD---------------------------- 50 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCC---CEEEEEEcCcchhH---HHHHHHh----------------------------
Confidence 4689999999999999999999998 88999999754321 1111000
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhh-h-HHHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDE-H-IRTAYNINVKGTQTIL 205 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~-~-~~~~~~~nv~~~~~ll 205 (366)
......++.++.+|+.+.. .+.+++.++|+|||+|+...... . ....+++|+.++.+++
T Consensus 51 -------------~~~~~~~~~~v~~Dl~d~~------~~~~~~~~~d~ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll 111 (351)
T PLN02650 51 -------------LPGATTRLTLWKADLAVEG------SFDDAIRGCTGVFHVATPMDFESKDPENEVIKPTVNGMLSIM 111 (351)
T ss_pred -------------ccCCCCceEEEEecCCChh------hHHHHHhCCCEEEEeCCCCCCCCCCchhhhhhHHHHHHHHHH
Confidence 0011135789999999987 78888889999999998654321 2 2467899999999999
Q ss_pred HHHHhcCCCcEEEEeeCcceecCcc---c-cccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHH
Q psy17528 206 ALAKRMKGLKSFVHVSTAYCNCDRK---F-IAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAE 281 (366)
Q Consensus 206 ~~a~~~~~~~~~v~iSS~~~~~~~~---~-~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E 281 (366)
+++.+.+.+++|||+||..+++... + ++|+.... . .. +.......+.|+.+|..+|
T Consensus 112 ~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~-~---------------~~----~~~~~~~~~~Y~~sK~~~E 171 (351)
T PLN02650 112 KACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSD-L---------------DF----CRRKKMTGWMYFVSKTLAE 171 (351)
T ss_pred HHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCc-h---------------hh----hhccccccchHHHHHHHHH
Confidence 9998863478999999986664321 1 23332110 0 00 0000011258999999999
Q ss_pred HHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHH
Q psy17528 282 DLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAW 359 (366)
Q Consensus 282 ~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~ 359 (366)
.+++.+. ++++++++||++||||+..+. .. ......+ ....+.... +.. ...++|+||+|+|++++.+++
T Consensus 172 ~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~--~~---~~~~~~~-~~~~~~~~~-~~~-~~~r~~v~V~Dva~a~~~~l~ 243 (351)
T PLN02650 172 KAAWKYAAENGLDFISIIPTLVVGPFISTS--MP---PSLITAL-SLITGNEAH-YSI-IKQGQFVHLDDLCNAHIFLFE 243 (351)
T ss_pred HHHHHHHHHcCCeEEEECCCceECCCCCCC--CC---ccHHHHH-HHhcCCccc-cCc-CCCcceeeHHHHHHHHHHHhc
Confidence 9998877 799999999999999986531 11 1111111 112232211 222 234799999999999999998
Q ss_pred hhh
Q psy17528 360 YFL 362 (366)
Q Consensus 360 ~~~ 362 (366)
++.
T Consensus 244 ~~~ 246 (351)
T PLN02650 244 HPA 246 (351)
T ss_pred CcC
Confidence 654
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-25 Score=212.25 Aligned_cols=217 Identities=28% Similarity=0.327 Sum_probs=168.1
Q ss_pred eEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccccc
Q psy17528 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNYF 129 (366)
Q Consensus 50 ~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (366)
.|||||||||||++|+++|++.| +.|+.++|......
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g---~~V~~~~r~~~~~~---------------------------------------- 38 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAG---HDVRGLDRLRDGLD---------------------------------------- 38 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCC---CeEEEEeCCCcccc----------------------------------------
Confidence 49999999999999999999998 89999999764321
Q ss_pred chhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCc-CEEEEcCcccChhhh----HHHHHHHHHHHHHHH
Q psy17528 130 NDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQT-TIIFHIAATVRFDEH----IRTAYNINVKGTQTI 204 (366)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~-d~Vih~a~~~~~~~~----~~~~~~~nv~~~~~l 204 (366)
... ..+.++.+|+.+.+ .....+..+ |+|||+|+....... +..++.+|+.++.++
T Consensus 39 ------------~~~-~~~~~~~~d~~~~~------~~~~~~~~~~d~vih~aa~~~~~~~~~~~~~~~~~~nv~gt~~l 99 (314)
T COG0451 39 ------------PLL-SGVEFVVLDLTDRD------LVDELAKGVPDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNL 99 (314)
T ss_pred ------------ccc-cccceeeecccchH------HHHHHHhcCCCEEEEccccCchhhhhhhCHHHHHHHHHHHHHHH
Confidence 001 46788999999875 566777777 999999998764433 345899999999999
Q ss_pred HHHHHhcCCCcEEEEeeCcceecCc---ccccccc-CCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHH
Q psy17528 205 LALAKRMKGLKSFVHVSTAYCNCDR---KFIAEKF-YPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATA 280 (366)
Q Consensus 205 l~~a~~~~~~~~~v~iSS~~~~~~~---~~~~e~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~ 280 (366)
++++... ++++|||.||.++++.. .+.+|+. .+.|. +.|+.+|+.+
T Consensus 100 l~aa~~~-~~~~~v~~ss~~~~~~~~~~~~~~E~~~~~~p~-----------------------------~~Yg~sK~~~ 149 (314)
T COG0451 100 LEAARAA-GVKRFVFASSVSVVYGDPPPLPIDEDLGPPRPL-----------------------------NPYGVSKLAA 149 (314)
T ss_pred HHHHHHc-CCCeEEEeCCCceECCCCCCCCcccccCCCCCC-----------------------------CHHHHHHHHH
Confidence 9999984 89999998887766543 1345542 22221 4799999999
Q ss_pred HHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcc-eeecCCCCcccCcccHHHHHHHHHHH
Q psy17528 281 EDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLI-RVVQTDPNISMDVVPGDRVINAMAAL 357 (366)
Q Consensus 281 E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~l~~~~~~~~~~v~vdDva~ai~~~ 357 (366)
|+.+..+. ++++++++||++||||+..+. +.. .....++....++.+ ....+++...++++|++|++++++.+
T Consensus 150 E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~ 225 (314)
T COG0451 150 EQLLRAYARLYGLPVVILRPFNVYGPGDKPD--LSS--GVVSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADALLLA 225 (314)
T ss_pred HHHHHHHHHHhCCCeEEEeeeeeeCCCCCCC--CCc--CcHHHHHHHHHhCCCcceEeCCCceeEeeEeHHHHHHHHHHH
Confidence 99999988 689999999999999987653 111 112334555666665 55666778889999999999999999
Q ss_pred HHhhh
Q psy17528 358 AWYFL 362 (366)
Q Consensus 358 ~~~~~ 362 (366)
++++.
T Consensus 226 ~~~~~ 230 (314)
T COG0451 226 LENPD 230 (314)
T ss_pred HhCCC
Confidence 98764
|
|
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-26 Score=221.64 Aligned_cols=248 Identities=27% Similarity=0.329 Sum_probs=184.7
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
++||+||||||+|.+|+++|+.+ .+ .+|+|++|..+.+...+|+.+.+.. +...
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~-~~-~kv~cLVRA~s~E~a~~RL~~~~~~--~~~~---------------------- 54 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDR-SD-AKVICLVRAQSDEAALARLEKTFDL--YRHW---------------------- 54 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhc-CC-CcEEEEEecCCHHHHHHHHHHHhhh--hhhh----------------------
Confidence 57999999999999999999998 34 7999999999887777888876652 1111
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALA 208 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll~~a 208 (366)
...+.++|+.+-||+..+.|||+...+..+.+.+|.|||+|+.+++-..+.++...|+.|+.+++++|
T Consensus 55 ------------~e~~~~ri~vv~gDl~e~~lGL~~~~~~~La~~vD~I~H~gA~Vn~v~pYs~L~~~NVlGT~evlrLa 122 (382)
T COG3320 55 ------------DELSADRVEVVAGDLAEPDLGLSERTWQELAENVDLIIHNAALVNHVFPYSELRGANVLGTAEVLRLA 122 (382)
T ss_pred ------------hhhhcceEEEEecccccccCCCCHHHHHHHhhhcceEEecchhhcccCcHHHhcCcchHhHHHHHHHH
Confidence 22356899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhc--ccCCCCchHHHHHHHHHHHHHH
Q psy17528 209 KRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEH--IIGGKPNSYTLTKATAEDLVRQ 286 (366)
Q Consensus 209 ~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Y~~sK~~~E~~l~~ 286 (366)
... +.|+++|+||.++.........+.-.. ...++ .-....++|+.||+.+|.++++
T Consensus 123 ~~g-k~Kp~~yVSsisv~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~GY~~SKwvaE~Lvr~ 181 (382)
T COG3320 123 ATG-KPKPLHYVSSISVGETEYYSNFTVDFD--------------------EISPTRNVGQGLAGGYGRSKWVAEKLVRE 181 (382)
T ss_pred hcC-CCceeEEEeeeeeccccccCCCccccc--------------------cccccccccCccCCCcchhHHHHHHHHHH
Confidence 975 789999999998876433211110000 00111 2223448999999999999999
Q ss_pred hc-CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhh
Q psy17528 287 VG-HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 287 ~~-~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
.. .|++++|+|||.|-|+.... .+. .-.....++....+-. . +.+.....+.+++|.+++++.....++
T Consensus 182 A~~rGLpv~I~Rpg~I~gds~tG--~~n-~~D~~~Rlv~~~~~lg--~-~P~~~~~~~~~p~~~v~~~v~~~~~~~ 251 (382)
T COG3320 182 AGDRGLPVTIFRPGYITGDSRTG--ALN-TRDFLTRLVLGLLQLG--I-APDSEYSLDMLPVDHVARAVVAPSVQV 251 (382)
T ss_pred HhhcCCCeEEEecCeeeccCccC--ccc-cchHHHHHHHHHHHhC--C-CCCcccchhhCccceeeEEeehhhhhH
Confidence 99 89999999999999987632 111 1111233333333211 1 223455677777777777666555544
|
|
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-25 Score=218.02 Aligned_cols=232 Identities=18% Similarity=0.180 Sum_probs=162.5
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
|+|||||||||||++++++|++.|. ..|++++|..... ..+.+.. .
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~--~~v~~~~~~~~~~-~~~~~~~------------~------------------- 46 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQ--DSVVNVDKLTYAG-NLESLAD------------V------------------- 46 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCC--CeEEEecCCCccc-hHHHHHh------------c-------------------
Confidence 4799999999999999999999972 2355555532111 0111100 0
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccCh---hhhHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRF---DEHIRTAYNINVKGTQT 203 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~---~~~~~~~~~~nv~~~~~ 203 (366)
. ....+.++.+|+.+.+ .+.++++ ++|+|||+|+.... ......++++|+.++.+
T Consensus 47 ------------~--~~~~~~~~~~Dl~d~~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ 106 (352)
T PRK10084 47 ------------S--DSERYVFEHADICDRA------ELDRIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYV 106 (352)
T ss_pred ------------c--cCCceEEEEecCCCHH------HHHHHHHhcCCCEEEECCcccCCcchhcCchhhhhhhhHHHHH
Confidence 0 0245778999999987 7888876 48999999997543 22456789999999999
Q ss_pred HHHHHHhc--------CCCcEEEEeeCcceecCccc---cccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCch
Q psy17528 204 ILALAKRM--------KGLKSFVHVSTAYCNCDRKF---IAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNS 272 (366)
Q Consensus 204 ll~~a~~~--------~~~~~~v~iSS~~~~~~~~~---~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (366)
++++|.+. .++++|||+||.++|+.... ..+....++.++ +.+....+.
T Consensus 107 ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~E--------------------~~~~~p~~~ 166 (352)
T PRK10084 107 LLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLFTE--------------------TTAYAPSSP 166 (352)
T ss_pred HHHHHHHhccccccccccceeEEEecchhhcCCCCccccccccccCCCccc--------------------cCCCCCCCh
Confidence 99999863 24568999999988875321 000000011111 011112278
Q ss_pred HHHHHHHHHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHH
Q psy17528 273 YTLTKATAEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRV 350 (366)
Q Consensus 273 Y~~sK~~~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDv 350 (366)
|+.+|..+|.+++.+. .+++++++|++.||||+..+. + .+..++..+..+....++++++..++|+|++|+
T Consensus 167 Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~~~~~-~------~~~~~~~~~~~~~~~~~~~~g~~~~~~v~v~D~ 239 (352)
T PRK10084 167 YSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPE-K------LIPLVILNALEGKPLPIYGKGDQIRDWLYVEDH 239 (352)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCCcCcc-c------hHHHHHHHHhcCCCeEEeCCCCeEEeeEEHHHH
Confidence 9999999999998876 689999999999999985321 1 123455666667777777888999999999999
Q ss_pred HHHHHHHHHhh
Q psy17528 351 INAMAALAWYF 361 (366)
Q Consensus 351 a~ai~~~~~~~ 361 (366)
|++++.+++..
T Consensus 240 a~a~~~~l~~~ 250 (352)
T PRK10084 240 ARALYKVVTEG 250 (352)
T ss_pred HHHHHHHHhcC
Confidence 99999888754
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.1e-25 Score=215.75 Aligned_cols=230 Identities=20% Similarity=0.134 Sum_probs=166.6
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
|+|||||||||||++++++|++.| ++|++++|+..... .+++...... .
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G---~~V~~~~r~~~~~~-~~~~~~~~~~-----~---------------------- 49 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKG---YEVHGLIRRSSSFN-TQRIEHIYED-----P---------------------- 49 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCC---CEEEEEecCCcccc-hhhhhhhhhc-----c----------------------
Confidence 589999999999999999999998 78999999754211 1111110000 0
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccChh---hhHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRFD---EHIRTAYNINVKGTQT 203 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~~---~~~~~~~~~nv~~~~~ 203 (366)
.......+.++.+|++|.+ .+.++++ ++|+|||+|+..... .......++|+.++.+
T Consensus 50 ------------~~~~~~~~~~~~~Dl~d~~------~l~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ 111 (343)
T TIGR01472 50 ------------HNVNKARMKLHYGDLTDSS------NLRRIIDEIKPTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLR 111 (343)
T ss_pred ------------ccccccceeEEEeccCCHH------HHHHHHHhCCCCEEEECCcccccchhhhChHHHHHHHHHHHHH
Confidence 0001246889999999977 7888887 469999999975432 2345566789999999
Q ss_pred HHHHHHhcCCC---cEEEEeeCcceecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHH
Q psy17528 204 ILALAKRMKGL---KSFVHVSTAYCNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKA 278 (366)
Q Consensus 204 ll~~a~~~~~~---~~~v~iSS~~~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~ 278 (366)
+++++.+. ++ ++|||+||+.+|+... ++.|+....|. +.|+.+|.
T Consensus 112 ll~a~~~~-~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~p~-----------------------------~~Y~~sK~ 161 (343)
T TIGR01472 112 LLEAVRTL-GLIKSVKFYQASTSELYGKVQEIPQNETTPFYPR-----------------------------SPYAAAKL 161 (343)
T ss_pred HHHHHHHh-CCCcCeeEEEeccHHhhCCCCCCCCCCCCCCCCC-----------------------------ChhHHHHH
Confidence 99999875 43 4899999999887532 34454333332 78999999
Q ss_pred HHHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcc-eeecCCCCcccCcccHHHHHHHHH
Q psy17528 279 TAEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLI-RVVQTDPNISMDVVPGDRVINAMA 355 (366)
Q Consensus 279 ~~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~l~~~~~~~~~~v~vdDva~ai~ 355 (366)
.+|.+++.+. +++++++.|+.++|||+... .+. ...+..++..+..|.. ..++++++..+||+||+|+|++++
T Consensus 162 ~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~V~D~a~a~~ 237 (343)
T TIGR01472 162 YAHWITVNYREAYGLFAVNGILFNHESPRRGE--NFV--TRKITRAAAKIKLGLQEKLYLGNLDAKRDWGHAKDYVEAMW 237 (343)
T ss_pred HHHHHHHHHHHHhCCceEEEeecccCCCCCCc--ccc--chHHHHHHHHHHcCCCCceeeCCCccccCceeHHHHHHHHH
Confidence 9999998876 68999999999999997421 111 1123445555666653 345678899999999999999999
Q ss_pred HHHHhh
Q psy17528 356 ALAWYF 361 (366)
Q Consensus 356 ~~~~~~ 361 (366)
.++++.
T Consensus 238 ~~~~~~ 243 (343)
T TIGR01472 238 LMLQQD 243 (343)
T ss_pred HHHhcC
Confidence 988764
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.6e-25 Score=223.63 Aligned_cols=226 Identities=19% Similarity=0.164 Sum_probs=166.8
Q ss_pred ccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccc
Q psy17528 42 IQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGI 121 (366)
Q Consensus 42 ~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (366)
+--..++|+|||||||||||++|+++|+++| ++|++++|..... .+.+...
T Consensus 113 ~~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G---~~V~~ld~~~~~~--~~~~~~~------------------------ 163 (442)
T PLN02206 113 LGLKRKGLRVVVTGGAGFVGSHLVDRLMARG---DSVIVVDNFFTGR--KENVMHH------------------------ 163 (442)
T ss_pred cccccCCCEEEEECcccHHHHHHHHHHHHCc---CEEEEEeCCCccc--hhhhhhh------------------------
Confidence 3334467999999999999999999999998 7888888753211 1111000
Q ss_pred ccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh---hhhHHHHHHHHH
Q psy17528 122 THRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF---DEHIRTAYNINV 198 (366)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~---~~~~~~~~~~nv 198 (366)
. ...+++++.+|+.+.. +.++|+|||+|+.... ..+....+++|+
T Consensus 164 -------------------~--~~~~~~~i~~D~~~~~-----------l~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv 211 (442)
T PLN02206 164 -------------------F--SNPNFELIRHDVVEPI-----------LLEVDQIYHLACPASPVHYKFNPVKTIKTNV 211 (442)
T ss_pred -------------------c--cCCceEEEECCccChh-----------hcCCCEEEEeeeecchhhhhcCHHHHHHHHH
Confidence 0 1246788889987642 3579999999996532 235677889999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeeCcceecCcc--ccccccCC--CCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHH
Q psy17528 199 KGTQTILALAKRMKGLKSFVHVSTAYCNCDRK--FIAEKFYP--PVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYT 274 (366)
Q Consensus 199 ~~~~~ll~~a~~~~~~~~~v~iSS~~~~~~~~--~~~e~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~ 274 (366)
.++.+++++|++. +. +|||+||+.+|+... +..|+.+. .|. ...+.|+
T Consensus 212 ~gt~nLleaa~~~-g~-r~V~~SS~~VYg~~~~~p~~E~~~~~~~P~--------------------------~~~s~Y~ 263 (442)
T PLN02206 212 VGTLNMLGLAKRV-GA-RFLLTSTSEVYGDPLQHPQVETYWGNVNPI--------------------------GVRSCYD 263 (442)
T ss_pred HHHHHHHHHHHHh-CC-EEEEECChHHhCCCCCCCCCccccccCCCC--------------------------CccchHH
Confidence 9999999999987 54 899999999987532 34444211 111 1127899
Q ss_pred HHHHHHHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHH
Q psy17528 275 LTKATAEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVIN 352 (366)
Q Consensus 275 ~sK~~~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ 352 (366)
.+|..+|+++..+. .+++++++||++||||+.....+ ..+..++.++..+....+++++++.++|+||+|+|+
T Consensus 264 ~SK~~aE~~~~~y~~~~g~~~~ilR~~~vyGp~~~~~~~-----~~v~~~i~~~l~~~~i~i~g~G~~~rdfi~V~Dva~ 338 (442)
T PLN02206 264 EGKRTAETLTMDYHRGANVEVRIARIFNTYGPRMCIDDG-----RVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVE 338 (442)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCcccc-----chHHHHHHHHHcCCCcEEeCCCCEEEeEEeHHHHHH
Confidence 99999999998876 68999999999999997532111 123456777777877778888899999999999999
Q ss_pred HHHHHHHhh
Q psy17528 353 AMAALAWYF 361 (366)
Q Consensus 353 ai~~~~~~~ 361 (366)
+++.+++..
T Consensus 339 ai~~a~e~~ 347 (442)
T PLN02206 339 GLMRLMEGE 347 (442)
T ss_pred HHHHHHhcC
Confidence 999988754
|
|
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-25 Score=212.41 Aligned_cols=214 Identities=21% Similarity=0.191 Sum_probs=147.8
Q ss_pred EEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccccc
Q psy17528 51 IFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNYFN 130 (366)
Q Consensus 51 ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (366)
|||||||||||++|+++|++.| ++++++.|+..... ..
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g---~~~v~~~~~~~~~~---~~------------------------------------ 39 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKG---ITDILVVDNLKDGT---KF------------------------------------ 39 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCC---CceEEEecCCCcch---HH------------------------------------
Confidence 8999999999999999999998 65666666543210 00
Q ss_pred hhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHH-HHHHH-----hCcCEEEEcCcccChh-hhHHHHHHHHHHHHHH
Q psy17528 131 DAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARD-EELLI-----SQTTIIFHIAATVRFD-EHIRTAYNINVKGTQT 203 (366)
Q Consensus 131 ~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~-~~~~~-----~~~d~Vih~a~~~~~~-~~~~~~~~~nv~~~~~ 203 (366)
..+..+|+.|.. .... +..++ .++|+|||+||..... ......++.|+.++.+
T Consensus 40 -----------------~~~~~~~~~d~~---~~~~~~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~n~~~t~~ 99 (308)
T PRK11150 40 -----------------VNLVDLDIADYM---DKEDFLAQIMAGDDFGDIEAIFHEGACSSTTEWDGKYMMDNNYQYSKE 99 (308)
T ss_pred -----------------Hhhhhhhhhhhh---hHHHHHHHHhcccccCCccEEEECceecCCcCCChHHHHHHHHHHHHH
Confidence 001123333321 0002 22333 2689999999864322 2344578999999999
Q ss_pred HHHHHHhcCCCcEEEEeeCcceecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHH
Q psy17528 204 ILALAKRMKGLKSFVHVSTAYCNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAE 281 (366)
Q Consensus 204 ll~~a~~~~~~~~~v~iSS~~~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E 281 (366)
++++|.+. +. +||++||+++|+... +.+|+.+..|. +.|+.+|..+|
T Consensus 100 ll~~~~~~-~~-~~i~~SS~~vyg~~~~~~~~E~~~~~p~-----------------------------~~Y~~sK~~~E 148 (308)
T PRK11150 100 LLHYCLER-EI-PFLYASSAATYGGRTDDFIEEREYEKPL-----------------------------NVYGYSKFLFD 148 (308)
T ss_pred HHHHHHHc-CC-cEEEEcchHHhCcCCCCCCccCCCCCCC-----------------------------CHHHHHHHHHH
Confidence 99999986 55 699999999987542 34444333222 78999999999
Q ss_pred HHHHHhc--CCCCEEEEecCccccCCCCCCCccccccch-HHHHHHHHhcCcceeec-CCCCcccCcccHHHHHHHHHHH
Q psy17528 282 DLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNG-VMALALGAGTGLIRVVQ-TDPNISMDVVPGDRVINAMAAL 357 (366)
Q Consensus 282 ~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~l~-~~~~~~~~~v~vdDva~ai~~~ 357 (366)
++++.+. .+++++++||++||||+..+.. . +.. ...+...+.+|....++ ++++..++|+||+|+|++++.+
T Consensus 149 ~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~-~---~~~~~~~~~~~~~~~~~~~i~~g~~~~~r~~i~v~D~a~a~~~~ 224 (308)
T PRK11150 149 EYVRQILPEANSQICGFRYFNVYGPREGHKG-S---MASVAFHLNNQLNNGENPKLFEGSENFKRDFVYVGDVAAVNLWF 224 (308)
T ss_pred HHHHHHHHHcCCCEEEEeeeeecCCCCCCCC-c---cchhHHHHHHHHhcCCCCEEecCCCceeeeeeeHHHHHHHHHHH
Confidence 9998876 6899999999999999865421 1 111 12344556667655444 5567789999999999999988
Q ss_pred HHhh
Q psy17528 358 AWYF 361 (366)
Q Consensus 358 ~~~~ 361 (366)
++..
T Consensus 225 ~~~~ 228 (308)
T PRK11150 225 WENG 228 (308)
T ss_pred HhcC
Confidence 8754
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=213.30 Aligned_cols=233 Identities=19% Similarity=0.236 Sum_probs=157.2
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+++||||||+||||++++++|++.| ++|++++|+... .+.+...
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G---~~V~~~~r~~~~---~~~~~~~------------------------------ 53 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRG---YTVHATLRDPAK---SLHLLSK------------------------------ 53 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCChHH---HHHHHHh------------------------------
Confidence 6799999999999999999999998 789988886431 1111110
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh-----hhHH-----HHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD-----EHIR-----TAYNIN 197 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~-----~~~~-----~~~~~n 197 (366)
.. ...++.++.+|+.+.+ .+.++++++|+|||+|+..... .... ..++.|
T Consensus 54 -------------~~-~~~~~~~~~~Dl~~~~------~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~ 113 (353)
T PLN02896 54 -------------WK-EGDRLRLFRADLQEEG------SFDEAVKGCDGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPA 113 (353)
T ss_pred -------------hc-cCCeEEEEECCCCCHH------HHHHHHcCCCEEEECCccccCCccccccchhhhhhHHhHHHH
Confidence 00 0246889999999977 7888888999999999975422 1222 244556
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEeeCcceecCcc-------ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCC
Q psy17528 198 VKGTQTILALAKRMKGLKSFVHVSTAYCNCDRK-------FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKP 270 (366)
Q Consensus 198 v~~~~~ll~~a~~~~~~~~~v~iSS~~~~~~~~-------~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (366)
+.++.++++++.+..++++||++||..+|+... +++|+. +.|.+. .. ......
T Consensus 114 ~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~-~~p~~~-----------------~~--~~~~~~ 173 (353)
T PLN02896 114 IKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETC-QTPIDH-----------------VW--NTKASG 173 (353)
T ss_pred HHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCccc-CCcHHH-----------------hh--ccCCCC
Confidence 799999999998764578999999998886421 233331 111100 00 001112
Q ss_pred chHHHHHHHHHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCccee--ecCC---CCcccC
Q psy17528 271 NSYTLTKATAEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRV--VQTD---PNISMD 343 (366)
Q Consensus 271 ~~Y~~sK~~~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--l~~~---~~~~~~ 343 (366)
++|+.+|..+|+++..+. ++++++++||++||||+..+. ++.....+.....|.... +.+. ....++
T Consensus 174 ~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d 247 (353)
T PLN02896 174 WVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPFLTPS------VPSSIQVLLSPITGDSKLFSILSAVNSRMGSIA 247 (353)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCCcCCC------CCchHHHHHHHhcCCccccccccccccccCcee
Confidence 579999999999999887 799999999999999976531 111122222223343221 1111 112469
Q ss_pred cccHHHHHHHHHHHHHhhh
Q psy17528 344 VVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~~~ 362 (366)
||||+|+|+|++.+++.+.
T Consensus 248 fi~v~Dva~a~~~~l~~~~ 266 (353)
T PLN02896 248 LVHIEDICDAHIFLMEQTK 266 (353)
T ss_pred EEeHHHHHHHHHHHHhCCC
Confidence 9999999999999987643
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-24 Score=208.24 Aligned_cols=198 Identities=20% Similarity=0.143 Sum_probs=151.8
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
|+||||||+||||++++++|++.| +|++++|...
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g----~V~~~~~~~~------------------------------------------ 34 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG----NLIALDVHST------------------------------------------ 34 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC----CEEEeccccc------------------------------------------
Confidence 479999999999999999999986 3677776421
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccChh---hhHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRFD---EHIRTAYNINVKGTQT 203 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~~---~~~~~~~~~nv~~~~~ 203 (366)
.+.+|+.|.+ .+.++++ ++|+|||+|+..... .++...+++|+.++.+
T Consensus 35 ---------------------~~~~Dl~d~~------~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~ 87 (299)
T PRK09987 35 ---------------------DYCGDFSNPE------GVAETVRKIRPDVIVNAAAHTAVDKAESEPEFAQLLNATSVEA 87 (299)
T ss_pred ---------------------cccCCCCCHH------HHHHHHHhcCCCEEEECCccCCcchhhcCHHHHHHHHHHHHHH
Confidence 2468999876 6777777 589999999976533 3456678899999999
Q ss_pred HHHHHHhcCCCcEEEEeeCcceecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHH
Q psy17528 204 ILALAKRMKGLKSFVHVSTAYCNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAE 281 (366)
Q Consensus 204 ll~~a~~~~~~~~~v~iSS~~~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E 281 (366)
++++|.+. +. +|||+||.++|+... ++.|+..+.|. +.|+.+|+.+|
T Consensus 88 l~~aa~~~-g~-~~v~~Ss~~Vy~~~~~~p~~E~~~~~P~-----------------------------~~Yg~sK~~~E 136 (299)
T PRK09987 88 IAKAANEV-GA-WVVHYSTDYVFPGTGDIPWQETDATAPL-----------------------------NVYGETKLAGE 136 (299)
T ss_pred HHHHHHHc-CC-eEEEEccceEECCCCCCCcCCCCCCCCC-----------------------------CHHHHHHHHHH
Confidence 99999987 54 799999999997532 56666555443 78999999999
Q ss_pred HHHHHhcCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCC--CCcccCcccHHHHHHHHHHHHH
Q psy17528 282 DLVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTD--PNISMDVVPGDRVINAMAALAW 359 (366)
Q Consensus 282 ~~l~~~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~--~~~~~~~v~vdDva~ai~~~~~ 359 (366)
+++..+. .+.+++|+++||||+... + +..++..+..+....++++ +...+++.++||++.++..++.
T Consensus 137 ~~~~~~~--~~~~ilR~~~vyGp~~~~-------~--~~~~~~~~~~~~~~~v~~d~~g~~~~~~~~~d~~~~~~~~~~~ 205 (299)
T PRK09987 137 KALQEHC--AKHLIFRTSWVYAGKGNN-------F--AKTMLRLAKEREELSVINDQFGAPTGAELLADCTAHAIRVALN 205 (299)
T ss_pred HHHHHhC--CCEEEEecceecCCCCCC-------H--HHHHHHHHhcCCCeEEeCCCcCCCCCHHHHHHHHHHHHHHhhc
Confidence 9998875 467999999999996421 1 2345555566777777766 5566667778888888887765
Q ss_pred hh
Q psy17528 360 YF 361 (366)
Q Consensus 360 ~~ 361 (366)
.+
T Consensus 206 ~~ 207 (299)
T PRK09987 206 KP 207 (299)
T ss_pred cC
Confidence 43
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.8e-24 Score=204.06 Aligned_cols=223 Identities=22% Similarity=0.194 Sum_probs=165.6
Q ss_pred eEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccccc
Q psy17528 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNYF 129 (366)
Q Consensus 50 ~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (366)
+|+|||||||||++++++|++.|+ ..+|++++|...... .+++.+.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~-~~~v~~~~~~~~~~~-~~~~~~~-------------------------------- 46 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHP-DAEVIVLDKLTYAGN-LENLADL-------------------------------- 46 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCC-CCEEEEecCCCcchh-hhhhhhh--------------------------------
Confidence 589999999999999999999863 257888877432111 1111110
Q ss_pred chhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhC--cCEEEEcCcccChh---hhHHHHHHHHHHHHHHH
Q psy17528 130 NDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQ--TTIIFHIAATVRFD---EHIRTAYNINVKGTQTI 204 (366)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~--~d~Vih~a~~~~~~---~~~~~~~~~nv~~~~~l 204 (366)
. ...++.++.+|+.+.+ .+.+++++ +|+|||+|+..... ......+++|+.++..+
T Consensus 47 -----------~--~~~~~~~~~~Dl~~~~------~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l 107 (317)
T TIGR01181 47 -----------E--DNPRYRFVKGDIGDRE------LVSRLFTEHQPDAVVHFAAESHVDRSISGPAAFIETNVVGTYTL 107 (317)
T ss_pred -----------c--cCCCcEEEEcCCcCHH------HHHHHHhhcCCCEEEEcccccCchhhhhCHHHHHHHHHHHHHHH
Confidence 0 1246788999999987 78888876 89999999975432 34567889999999999
Q ss_pred HHHHHhcCCCcEEEEeeCcceecCcc---ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHH
Q psy17528 205 LALAKRMKGLKSFVHVSTAYCNCDRK---FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAE 281 (366)
Q Consensus 205 l~~a~~~~~~~~~v~iSS~~~~~~~~---~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E 281 (366)
++++.+.....++|++||.++|+... +..|.....| .+.|+.+|..+|
T Consensus 108 ~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~~~e~~~~~~-----------------------------~~~Y~~sK~~~e 158 (317)
T TIGR01181 108 LEAVRKYWHEFRFHHISTDEVYGDLEKGDAFTETTPLAP-----------------------------SSPYSASKAASD 158 (317)
T ss_pred HHHHHhcCCCceEEEeeccceeCCCCCCCCcCCCCCCCC-----------------------------CCchHHHHHHHH
Confidence 99998752223899999998887533 2334332222 168999999999
Q ss_pred HHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHH
Q psy17528 282 DLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAW 359 (366)
Q Consensus 282 ~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~ 359 (366)
.+++.+. .+++++++||+.+||+...+. . .+..++..+..+....++++++..++|+|++|+|+++..+++
T Consensus 159 ~~~~~~~~~~~~~~~i~R~~~i~G~~~~~~-~------~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~~~~~~~ 231 (317)
T TIGR01181 159 HLVRAYHRTYGLPALITRCSNNYGPYQFPE-K------LIPLMITNALAGKPLPVYGDGQQVRDWLYVEDHCRAIYLVLE 231 (317)
T ss_pred HHHHHHHHHhCCCeEEEEeccccCCCCCcc-c------HHHHHHHHHhcCCCceEeCCCceEEeeEEHHHHHHHHHHHHc
Confidence 9998765 689999999999999975431 1 124456667777766777788889999999999999999887
Q ss_pred hh
Q psy17528 360 YF 361 (366)
Q Consensus 360 ~~ 361 (366)
..
T Consensus 232 ~~ 233 (317)
T TIGR01181 232 KG 233 (317)
T ss_pred CC
Confidence 54
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-24 Score=209.82 Aligned_cols=232 Identities=15% Similarity=0.096 Sum_probs=167.0
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
.++++||||||+||||++++++|++.| ++|++++|.++.... +++..+ ...
T Consensus 4 ~~~~~vlVTGatGfiG~~l~~~L~~~G---~~V~~~~r~~~~~~~-~~~~~~---------~~~---------------- 54 (340)
T PLN02653 4 PPRKVALITGITGQDGSYLTEFLLSKG---YEVHGIIRRSSNFNT-QRLDHI---------YID---------------- 54 (340)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCC---CEEEEEecccccccc-cchhhh---------ccc----------------
Confidence 347899999999999999999999998 889999987532110 011000 000
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccChh---hhHHHHHHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRFD---EHIRTAYNINVKG 200 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~~---~~~~~~~~~nv~~ 200 (366)
.......+.++.+|+.+.. .+..++. ++|+|||+|+..... ......+++|+.+
T Consensus 55 ---------------~~~~~~~~~~~~~Dl~d~~------~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~g 113 (340)
T PLN02653 55 ---------------PHPNKARMKLHYGDLSDAS------SLRRWLDDIKPDEVYNLAAQSHVAVSFEMPDYTADVVATG 113 (340)
T ss_pred ---------------cccccCceEEEEecCCCHH------HHHHHHHHcCCCEEEECCcccchhhhhhChhHHHHHHHHH
Confidence 0011246889999999876 6777776 469999999975432 3345667889999
Q ss_pred HHHHHHHHHhcCCCc-----EEEEeeCcceecCcc-ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHH
Q psy17528 201 TQTILALAKRMKGLK-----SFVHVSTAYCNCDRK-FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYT 274 (366)
Q Consensus 201 ~~~ll~~a~~~~~~~-----~~v~iSS~~~~~~~~-~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~ 274 (366)
+.++++++.+. +++ +||++||+.+|+... ++.|+....|. +.|+
T Consensus 114 t~~ll~~~~~~-~~~~~~~~~~v~~Ss~~vyg~~~~~~~E~~~~~p~-----------------------------~~Y~ 163 (340)
T PLN02653 114 ALRLLEAVRLH-GQETGRQIKYYQAGSSEMYGSTPPPQSETTPFHPR-----------------------------SPYA 163 (340)
T ss_pred HHHHHHHHHHh-ccccccceeEEEeccHHHhCCCCCCCCCCCCCCCC-----------------------------ChhH
Confidence 99999999876 443 899999998887543 34454433332 7899
Q ss_pred HHHHHHHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCccee-ecCCCCcccCcccHHHHH
Q psy17528 275 LTKATAEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRV-VQTDPNISMDVVPGDRVI 351 (366)
Q Consensus 275 ~sK~~~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-l~~~~~~~~~~v~vdDva 351 (366)
.+|+.+|.+++.+. +++.++..|+.++|||+.... +.. ..+..++..+..+.... +.++++..++|+|++|+|
T Consensus 164 ~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~v~D~a 239 (340)
T PLN02653 164 VAKVAAHWYTVNYREAYGLFACNGILFNHESPRRGEN--FVT--RKITRAVGRIKVGLQKKLFLGNLDASRDWGFAGDYV 239 (340)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEeeeccccCCCCCcc--cch--hHHHHHHHHHHcCCCCceEeCCCcceecceeHHHHH
Confidence 99999999998876 688889999999999864321 111 11233444555665444 447889999999999999
Q ss_pred HHHHHHHHhh
Q psy17528 352 NAMAALAWYF 361 (366)
Q Consensus 352 ~ai~~~~~~~ 361 (366)
+|++.++++.
T Consensus 240 ~a~~~~~~~~ 249 (340)
T PLN02653 240 EAMWLMLQQE 249 (340)
T ss_pred HHHHHHHhcC
Confidence 9999998764
|
|
| >KOG1429|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-25 Score=207.95 Aligned_cols=223 Identities=22% Similarity=0.202 Sum_probs=174.2
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
.++|+||||+|||||||+++|+..| +.|++++....... |-+
T Consensus 27 ~lrI~itGgaGFIgSHLvdkLm~eg---h~VIa~Dn~ftg~k---------------------------------~n~-- 68 (350)
T KOG1429|consen 27 NLRILITGGAGFIGSHLVDKLMTEG---HEVIALDNYFTGRK---------------------------------ENL-- 68 (350)
T ss_pred CcEEEEecCcchHHHHHHHHHHhcC---CeEEEEecccccch---------------------------------hhc--
Confidence 3899999999999999999999998 99999988643210 000
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccC---hhhhHHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVR---FDEHIRTAYNINVKGTQTI 204 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~---~~~~~~~~~~~nv~~~~~l 204 (366)
+.....+..+.+..|+.. .++..+|.|+|+|+..+ +...+-..++.|+.++.+.
T Consensus 69 ------------~~~~~~~~fel~~hdv~~-----------pl~~evD~IyhLAapasp~~y~~npvktIktN~igtln~ 125 (350)
T KOG1429|consen 69 ------------EHWIGHPNFELIRHDVVE-----------PLLKEVDQIYHLAAPASPPHYKYNPVKTIKTNVIGTLNM 125 (350)
T ss_pred ------------chhccCcceeEEEeechh-----------HHHHHhhhhhhhccCCCCcccccCccceeeecchhhHHH
Confidence 011112455555555543 45678999999999754 3345566888899999999
Q ss_pred HHHHHhcCCCcEEEEeeCcceecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHH
Q psy17528 205 LALAKRMKGLKSFVHVSTAYCNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAED 282 (366)
Q Consensus 205 l~~a~~~~~~~~~v~iSS~~~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~ 282 (366)
+.+|++. + +||++.||+.+|++.. |+.|.+..... +......|+..|+.+|.
T Consensus 126 lglakrv-~-aR~l~aSTseVYgdp~~hpq~e~ywg~vn------------------------pigpr~cydegKr~aE~ 179 (350)
T KOG1429|consen 126 LGLAKRV-G-ARFLLASTSEVYGDPLVHPQVETYWGNVN------------------------PIGPRSCYDEGKRVAET 179 (350)
T ss_pred HHHHHHh-C-ceEEEeecccccCCcccCCCccccccccC------------------------cCCchhhhhHHHHHHHH
Confidence 9999996 3 7999999999998844 44455433322 11223799999999999
Q ss_pred HHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHh
Q psy17528 283 LVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWY 360 (366)
Q Consensus 283 ~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~ 360 (366)
++.++. .|+.+.|.|++++|||+....++ ..+..++.+++++.+..++++|.+.++|+||+|+++++++++++
T Consensus 180 L~~~y~k~~giE~rIaRifNtyGPrm~~~dg-----rvvsnf~~q~lr~epltv~g~G~qtRSF~yvsD~Vegll~Lm~s 254 (350)
T KOG1429|consen 180 LCYAYHKQEGIEVRIARIFNTYGPRMHMDDG-----RVVSNFIAQALRGEPLTVYGDGKQTRSFQYVSDLVEGLLRLMES 254 (350)
T ss_pred HHHHhhcccCcEEEEEeeecccCCccccCCC-----hhhHHHHHHHhcCCCeEEEcCCcceEEEEeHHHHHHHHHHHhcC
Confidence 999998 89999999999999998764332 24567889999999999999999999999999999999999987
Q ss_pred hh
Q psy17528 361 FL 362 (366)
Q Consensus 361 ~~ 362 (366)
+.
T Consensus 255 ~~ 256 (350)
T KOG1429|consen 255 DY 256 (350)
T ss_pred CC
Confidence 64
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.8e-24 Score=206.04 Aligned_cols=246 Identities=27% Similarity=0.321 Sum_probs=172.3
Q ss_pred eEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccccc
Q psy17528 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNYF 129 (366)
Q Consensus 50 ~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (366)
+|||||||||||++++++|++.| ...+|++++|+.+.....+++.+.+......
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g-~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~------------------------- 54 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRS-TQAKVICLVRAASEEHAMERLREALRSYRLW------------------------- 54 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCC-CCCEEEEEEccCCHHHHHHHHHHHHHHhCCC-------------------------
Confidence 58999999999999999999997 3358999999865443344554433221000
Q ss_pred chhhhhhccccCCCCC-CcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHHHHH
Q psy17528 130 NDAVFDRMRLECPNYA-DKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALA 208 (366)
Q Consensus 130 ~~~~~~~~~~~~~~~~-~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll~~a 208 (366)
..... .++.++.+|+.++.+|+....+..+..++|+|||+|+.+.+...+....+.|+.++.++++++
T Consensus 55 -----------~~~~~~~~v~~~~~D~~~~~~gl~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~nv~g~~~ll~~a 123 (367)
T TIGR01746 55 -----------QEDLARERIEVVAGDLSEPRLGLSDAEWERLAENVDTIVHNGALVNWVYPYSELRAANVLGTREVLRLA 123 (367)
T ss_pred -----------CchhhhCCEEEEeCCcCcccCCcCHHHHHHHHhhCCEEEeCCcEeccCCcHHHHhhhhhHHHHHHHHHH
Confidence 00011 578999999999999999888888888999999999988766677788899999999999999
Q ss_pred HhcCCCcEEEEeeCcceecCccc--cccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHH
Q psy17528 209 KRMKGLKSFVHVSTAYCNCDRKF--IAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQ 286 (366)
Q Consensus 209 ~~~~~~~~~v~iSS~~~~~~~~~--~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~ 286 (366)
.+. +.++|+++||.++++.... ..|.....+ ......+.|+.+|+.+|.++..
T Consensus 124 ~~~-~~~~~v~iSS~~v~~~~~~~~~~~~~~~~~------------------------~~~~~~~~Y~~sK~~~E~~~~~ 178 (367)
T TIGR01746 124 ASG-RAKPLHYVSTISVLAAIDLSTVTEDDAIVT------------------------PPPGLAGGYAQSKWVAELLVRE 178 (367)
T ss_pred hhC-CCceEEEEccccccCCcCCCCccccccccc------------------------cccccCCChHHHHHHHHHHHHH
Confidence 886 7788999999988865321 111111000 0011236899999999999988
Q ss_pred hc-CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 287 VG-HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 287 ~~-~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
.. .+++++++||+.|||+.... .......+..++....... .+........+|+|++|++++++.++..+.
T Consensus 179 ~~~~g~~~~i~Rpg~v~G~~~~g---~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~vddva~ai~~~~~~~~ 250 (367)
T TIGR01746 179 ASDRGLPVTIVRPGRILGNSYTG---AINSSDILWRMVKGCLALG--AYPDSPELTEDLTPVDYVARAIVALSSQPA 250 (367)
T ss_pred HHhcCCCEEEECCCceeecCCCC---CCCchhHHHHHHHHHHHhC--CCCCCCccccCcccHHHHHHHHHHHHhCCC
Confidence 76 68999999999999974321 1111111122332222211 112122236789999999999999887654
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-24 Score=205.19 Aligned_cols=225 Identities=10% Similarity=0.076 Sum_probs=156.5
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+++|||||||||||++++++|++.| ++|++++|+.+.....+.+..
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G---~~V~~~~R~~~~~~~~~~~~~------------------------------- 51 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRG---YTVHAAVQKNGETEIEKEIRG------------------------------- 51 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCC---CEEEEEEcCchhhhHHHHHHh-------------------------------
Confidence 5789999999999999999999999 889999986432211111110
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccC-hhhhHHHHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVR-FDEHIRTAYNINVKGTQTILA 206 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~-~~~~~~~~~~~nv~~~~~ll~ 206 (366)
......++.++.+|+++.+ .+.+++.++|.|+|.++... .....+..+++|+.++.++++
T Consensus 52 -------------l~~~~~~~~~~~~Dl~d~~------~~~~~l~~~d~v~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~ 112 (297)
T PLN02583 52 -------------LSCEEERLKVFDVDPLDYH------SILDALKGCSGLFCCFDPPSDYPSYDEKMVDVEVRAAHNVLE 112 (297)
T ss_pred -------------cccCCCceEEEEecCCCHH------HHHHHHcCCCEEEEeCccCCcccccHHHHHHHHHHHHHHHHH
Confidence 1001246888999999987 78888899999999876543 222356789999999999999
Q ss_pred HHHhcCCCcEEEEeeCcceecC--c-c----ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHH
Q psy17528 207 LAKRMKGLKSFVHVSTAYCNCD--R-K----FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKAT 279 (366)
Q Consensus 207 ~a~~~~~~~~~v~iSS~~~~~~--~-~----~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~ 279 (366)
++.+..+++++|++||..++.. . . +++|+.+..+ .+.......|+.+|..
T Consensus 113 aa~~~~~v~riV~~SS~~a~~~~~~~~~~~~~~~E~~~~~~-----------------------~~~~~~~~~Y~~sK~~ 169 (297)
T PLN02583 113 ACAQTDTIEKVVFTSSLTAVIWRDDNISTQKDVDERSWSDQ-----------------------NFCRKFKLWHALAKTL 169 (297)
T ss_pred HHHhcCCccEEEEecchHheecccccCCCCCCCCcccCCCH-----------------------HHHhhcccHHHHHHHH
Confidence 9987546789999999855421 1 1 2233221110 0000111369999999
Q ss_pred HHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHH
Q psy17528 280 AEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAAL 357 (366)
Q Consensus 280 ~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~ 357 (366)
+|++++.+. .++++++|||++||||...+... .+.+... .. +...+.||||+|||+|++.|
T Consensus 170 aE~~~~~~~~~~gi~~v~lrp~~v~Gp~~~~~~~--------------~~~~~~~-~~--~~~~~~~v~V~Dva~a~~~a 232 (297)
T PLN02583 170 SEKTAWALAMDRGVNMVSINAGLLMGPSLTQHNP--------------YLKGAAQ-MY--ENGVLVTVDVNFLVDAHIRA 232 (297)
T ss_pred HHHHHHHHHHHhCCcEEEEcCCcccCCCCCCchh--------------hhcCCcc-cC--cccCcceEEHHHHHHHHHHH
Confidence 999998765 68999999999999997642110 1122111 11 12356799999999999999
Q ss_pred HHhhhhcC
Q psy17528 358 AWYFLFSC 365 (366)
Q Consensus 358 ~~~~~~~~ 365 (366)
++.+...+
T Consensus 233 l~~~~~~~ 240 (297)
T PLN02583 233 FEDVSSYG 240 (297)
T ss_pred hcCcccCC
Confidence 99776544
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.6e-24 Score=206.32 Aligned_cols=208 Identities=20% Similarity=0.228 Sum_probs=157.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++||||||+||||++++++|++.| ...+|++++|+... ...+.+.
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g-~~~~V~~~~r~~~~---~~~~~~~---------------------------- 49 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENY-NPKKIIIYSRDELK---QWEMQQK---------------------------- 49 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhC-CCcEEEEEcCChhH---HHHHHHH----------------------------
Confidence 467899999999999999999999985 33678888886431 1111110
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh---hhhHHHHHHHHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF---DEHIRTAYNINVKGTQ 202 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~---~~~~~~~~~~nv~~~~ 202 (366)
.. ..++.++.+|+.|.+ .+.++++++|+|||+||.... ..+....+++|+.++.
T Consensus 50 ---------------~~--~~~~~~v~~Dl~d~~------~l~~~~~~iD~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~ 106 (324)
T TIGR03589 50 ---------------FP--APCLRFFIGDVRDKE------RLTRALRGVDYVVHAAALKQVPAAEYNPFECIRTNINGAQ 106 (324)
T ss_pred ---------------hC--CCcEEEEEccCCCHH------HHHHHHhcCCEEEECcccCCCchhhcCHHHHHHHHHHHHH
Confidence 10 146889999999987 788888999999999997432 2344678999999999
Q ss_pred HHHHHHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHH
Q psy17528 203 TILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAED 282 (366)
Q Consensus 203 ~ll~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~ 282 (366)
++++++.+. ++++||++||.... .| .++|+.+|+.+|.
T Consensus 107 ~ll~aa~~~-~~~~iV~~SS~~~~------------~p-----------------------------~~~Y~~sK~~~E~ 144 (324)
T TIGR03589 107 NVIDAAIDN-GVKRVVALSTDKAA------------NP-----------------------------INLYGATKLASDK 144 (324)
T ss_pred HHHHHHHHc-CCCEEEEEeCCCCC------------CC-----------------------------CCHHHHHHHHHHH
Confidence 999999986 78899999995321 11 1679999999999
Q ss_pred HHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCc-ceeecCCCCcccCcccHHHHHHHHHH
Q psy17528 283 LVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGL-IRVVQTDPNISMDVVPGDRVINAMAA 356 (366)
Q Consensus 283 ~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~l~~~~~~~~~~v~vdDva~ai~~ 356 (366)
+++.+. .+++++++||++||||+.. + +..+......+. ..++. +++..++|+|++|+|++++.
T Consensus 145 l~~~~~~~~~~~gi~~~~lR~g~v~G~~~~----~------i~~~~~~~~~~~~~~~i~-~~~~~r~~i~v~D~a~a~~~ 213 (324)
T TIGR03589 145 LFVAANNISGSKGTRFSVVRYGNVVGSRGS----V------VPFFKSLKEEGVTELPIT-DPRMTRFWITLEQGVNFVLK 213 (324)
T ss_pred HHHHHHhhccccCcEEEEEeecceeCCCCC----c------HHHHHHHHHhCCCCeeeC-CCCceEeeEEHHHHHHHHHH
Confidence 987632 6899999999999998642 1 122334444554 34444 67788999999999999999
Q ss_pred HHHhh
Q psy17528 357 LAWYF 361 (366)
Q Consensus 357 ~~~~~ 361 (366)
+++..
T Consensus 214 al~~~ 218 (324)
T TIGR03589 214 SLERM 218 (324)
T ss_pred HHhhC
Confidence 98763
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6e-24 Score=224.80 Aligned_cols=237 Identities=27% Similarity=0.300 Sum_probs=167.2
Q ss_pred CeEEEeCCcchHHHHHHHHHHH--hCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLR--CCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~--~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
|+|||||||||||++|+++|++ .| ++|++++|+... .++......
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g---~~V~~l~R~~~~----~~~~~~~~~-------------------------- 47 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRRE---ATVHVLVRRQSL----SRLEALAAY-------------------------- 47 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCC---CEEEEEECcchH----HHHHHHHHh--------------------------
Confidence 4799999999999999999995 55 899999996431 122111100
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILA 206 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll~ 206 (366)
. ...+++++.+|+.++.++++...+..+ .++|+|||+||..+.........+.|+.++.++++
T Consensus 48 --------------~--~~~~v~~~~~Dl~~~~~~~~~~~~~~l-~~~D~Vih~Aa~~~~~~~~~~~~~~nv~gt~~ll~ 110 (657)
T PRK07201 48 --------------W--GADRVVPLVGDLTEPGLGLSEADIAEL-GDIDHVVHLAAIYDLTADEEAQRAANVDGTRNVVE 110 (657)
T ss_pred --------------c--CCCcEEEEecccCCccCCcCHHHHHHh-cCCCEEEECceeecCCCCHHHHHHHHhHHHHHHHH
Confidence 0 014688999999998888887777777 89999999999876666667788999999999999
Q ss_pred HHHhcCCCcEEEEeeCcceecCcc-ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHH
Q psy17528 207 LAKRMKGLKSFVHVSTAYCNCDRK-FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVR 285 (366)
Q Consensus 207 ~a~~~~~~~~~v~iSS~~~~~~~~-~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~ 285 (366)
++.+. ++++|||+||..+++... ...|...+.+ ....+.|+.+|+.+|+++.
T Consensus 111 ~a~~~-~~~~~v~~SS~~v~g~~~~~~~e~~~~~~--------------------------~~~~~~Y~~sK~~~E~~~~ 163 (657)
T PRK07201 111 LAERL-QAATFHHVSSIAVAGDYEGVFREDDFDEG--------------------------QGLPTPYHRTKFEAEKLVR 163 (657)
T ss_pred HHHhc-CCCeEEEEeccccccCccCccccccchhh--------------------------cCCCCchHHHHHHHHHHHH
Confidence 99987 688999999998886432 2222221111 1123789999999999998
Q ss_pred HhcCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhc-CcceeecCCCCcccCcccHHHHHHHHHHHHHhhhh
Q psy17528 286 QVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGT-GLIRVVQTDPNISMDVVPGDRVINAMAALAWYFLF 363 (366)
Q Consensus 286 ~~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~~ 363 (366)
+.. +++++++||++|||+.................++..... .....+.+.+....+++|++|+++++..++..+..
T Consensus 164 ~~~-g~~~~ilRp~~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~ 241 (657)
T PRK07201 164 EEC-GLPWRVYRPAVVVGDSRTGEMDKIDGPYYFFKVLAKLAKLPSWLPMVGPDGGRTNIVPVDYVADALDHLMHKDGR 241 (657)
T ss_pred HcC-CCcEEEEcCCeeeecCCCCccccCCcHHHHHHHHHHhccCCcccccccCCCCeeeeeeHHHHHHHHHHHhcCcCC
Confidence 654 899999999999998653211111111111223333321 11123344556678999999999999998875543
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-23 Score=204.27 Aligned_cols=234 Identities=21% Similarity=0.188 Sum_probs=164.9
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcC-HHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTS-ITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
+++++|+|||||||||++++++|++.| ++|++++|...... ..+++.+.
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g---~~V~~~~~~~~~~~~~~~~~~~~--------------------------- 52 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAG---YKVVVIDNLDNSSEEALRRVKEL--------------------------- 52 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCCcchHHHHHHHHHh---------------------------
Confidence 457899999999999999999999998 78999987643211 01111110
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccCh---hhhHHHHHHHHHH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRF---DEHIRTAYNINVK 199 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~---~~~~~~~~~~nv~ 199 (366)
......++.++.+|+.+.. .+..+++ ++|+|||+|+.... .......++.|+.
T Consensus 53 ----------------~~~~~~~~~~~~~D~~~~~------~l~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~ 110 (352)
T PLN02240 53 ----------------AGDLGDNLVFHKVDLRDKE------ALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLV 110 (352)
T ss_pred ----------------hcccCccceEEecCcCCHH------HHHHHHHhCCCCEEEEccccCCccccccCHHHHHHHHHH
Confidence 0011246788999999876 6777765 68999999996432 2345678899999
Q ss_pred HHHHHHHHHHhcCCCcEEEEeeCcceecCc--cccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHH
Q psy17528 200 GTQTILALAKRMKGLKSFVHVSTAYCNCDR--KFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTK 277 (366)
Q Consensus 200 ~~~~ll~~a~~~~~~~~~v~iSS~~~~~~~--~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK 277 (366)
++.++++++.+. ++++||++||+.+|+.. .+++|+....|. +.|+.+|
T Consensus 111 ~~~~l~~~~~~~-~~~~~v~~Ss~~vyg~~~~~~~~E~~~~~~~-----------------------------~~Y~~sK 160 (352)
T PLN02240 111 GTINLLEVMAKH-GCKKLVFSSSATVYGQPEEVPCTEEFPLSAT-----------------------------NPYGRTK 160 (352)
T ss_pred HHHHHHHHHHHc-CCCEEEEEccHHHhCCCCCCCCCCCCCCCCC-----------------------------CHHHHHH
Confidence 999999999876 78899999999888642 245555433322 7899999
Q ss_pred HHHHHHHHHhc---CCCCEEEEecCccccCCCCCCCcccc-cc-chHHHHHHHHhcCc--ceeecC------CCCcccCc
Q psy17528 278 ATAEDLVRQVG---HELPICVLRPSIVFPTLQEPMPLWIK-GF-NGVMALALGAGTGL--IRVVQT------DPNISMDV 344 (366)
Q Consensus 278 ~~~E~~l~~~~---~gl~~~ilRp~~v~G~~~~~~~~~~~-~~-~~~~~~~~~~~~g~--~~~l~~------~~~~~~~~ 344 (366)
..+|++++.+. .+++++++|++++||++....-+... .+ ..+..++.....+. ...+++ ++...++|
T Consensus 161 ~~~e~~~~~~~~~~~~~~~~~~R~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~ 240 (352)
T PLN02240 161 LFIEEICRDIHASDPEWKIILLRYFNPVGAHPSGRIGEDPKGIPNNLMPYVQQVAVGRRPELTVFGNDYPTKDGTGVRDY 240 (352)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeecCcCCCCccccccCCCCCCcchHHHHHHHHHhCCCCceEEeCCCCCCCCCCEEEee
Confidence 99999998764 47889999999999985421111100 01 12233444444443 233443 67889999
Q ss_pred ccHHHHHHHHHHHHHhh
Q psy17528 345 VPGDRVINAMAALAWYF 361 (366)
Q Consensus 345 v~vdDva~ai~~~~~~~ 361 (366)
+|++|+|++++.+++..
T Consensus 241 i~v~D~a~a~~~a~~~~ 257 (352)
T PLN02240 241 IHVMDLADGHIAALRKL 257 (352)
T ss_pred EEHHHHHHHHHHHHhhh
Confidence 99999999999888653
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.3e-24 Score=210.42 Aligned_cols=233 Identities=15% Similarity=0.167 Sum_probs=158.7
Q ss_pred cccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccc
Q psy17528 43 QEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGIT 122 (366)
Q Consensus 43 ~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (366)
...+++++||||||+||||++++++|++.| ++|+++.|+.+. .+.+..+.. ...
T Consensus 48 ~~~~~~k~VLVTGatGfIG~~lv~~L~~~G---~~V~~~~r~~~~---~~~l~~l~~------~~~-------------- 101 (367)
T PLN02686 48 GADAEARLVCVTGGVSFLGLAIVDRLLRHG---YSVRIAVDTQED---KEKLREMEM------FGE-------------- 101 (367)
T ss_pred ccCCCCCEEEEECCchHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHHhh------hcc--------------
Confidence 345668999999999999999999999998 788888886421 111111000 000
Q ss_pred cccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhh---hHHHHHHHHHH
Q psy17528 123 HRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDE---HIRTAYNINVK 199 (366)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~---~~~~~~~~nv~ 199 (366)
.......+.++.+|+.+.+ .+.+++.++|.|||+|+...... ......+.|+.
T Consensus 102 ------------------~~~~~~~~~~v~~Dl~d~~------~l~~~i~~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~ 157 (367)
T PLN02686 102 ------------------MGRSNDGIWTVMANLTEPE------SLHEAFDGCAGVFHTSAFVDPAGLSGYTKSMAELEAK 157 (367)
T ss_pred ------------------ccccCCceEEEEcCCCCHH------HHHHHHHhccEEEecCeeecccccccccchhhhhhHH
Confidence 0001135788999999987 78888999999999999754322 12345678999
Q ss_pred HHHHHHHHHHhcCCCcEEEEeeCc--ceecCc------cccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCc
Q psy17528 200 GTQTILALAKRMKGLKSFVHVSTA--YCNCDR------KFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPN 271 (366)
Q Consensus 200 ~~~~ll~~a~~~~~~~~~v~iSS~--~~~~~~------~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (366)
++.++++++.+..++++|||+||. .+|+.. ..+.|+.... + .......+
T Consensus 158 gt~~llea~~~~~~v~r~V~~SS~~~~vyg~~~~~~~~~~i~E~~~~~----------------~-------~~~~~p~~ 214 (367)
T PLN02686 158 ASENVIEACVRTESVRKCVFTSSLLACVWRQNYPHDLPPVIDEESWSD----------------E-------SFCRDNKL 214 (367)
T ss_pred HHHHHHHHHHhcCCccEEEEeccHHHhcccccCCCCCCcccCCCCCCC----------------h-------hhcccccc
Confidence 999999999875468999999996 355421 1122321110 0 00111126
Q ss_pred hHHHHHHHHHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHH
Q psy17528 272 SYTLTKATAEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDR 349 (366)
Q Consensus 272 ~Y~~sK~~~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdD 349 (366)
.|+.+|+.+|++++.+. ++++++++||++||||+..... . . .+.....+. ..+++++ .++|+||+|
T Consensus 215 ~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vyGp~~~~~~------~--~-~~~~~~~g~-~~~~g~g--~~~~v~V~D 282 (367)
T PLN02686 215 WYALGKLKAEKAAWRAARGKGLKLATICPALVTGPGFFRRN------S--T-ATIAYLKGA-QEMLADG--LLATADVER 282 (367)
T ss_pred hHHHHHHHHHHHHHHHHHhcCceEEEEcCCceECCCCCCCC------C--h-hHHHHhcCC-CccCCCC--CcCeEEHHH
Confidence 79999999999998766 6899999999999999753211 0 0 122344453 2344443 457999999
Q ss_pred HHHHHHHHHHh
Q psy17528 350 VINAMAALAWY 360 (366)
Q Consensus 350 va~ai~~~~~~ 360 (366)
+|+|++.+++.
T Consensus 283 va~A~~~al~~ 293 (367)
T PLN02686 283 LAEAHVCVYEA 293 (367)
T ss_pred HHHHHHHHHhc
Confidence 99999999875
|
|
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.7e-24 Score=202.67 Aligned_cols=209 Identities=16% Similarity=0.116 Sum_probs=148.4
Q ss_pred EEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccccch
Q psy17528 52 FITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNYFND 131 (366)
Q Consensus 52 lItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (366)
||||||||||++|++.|++.| +.|+++.+.
T Consensus 1 lItGa~GfiG~~l~~~L~~~g---~~v~~~~~~----------------------------------------------- 30 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALG---FTNLVLRTH----------------------------------------------- 30 (306)
T ss_pred CcccCCCcccHHHHHHHHhCC---CcEEEeecc-----------------------------------------------
Confidence 699999999999999999998 555544321
Q ss_pred hhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccCh----hhhHHHHHHHHHHHHHHHH
Q psy17528 132 AVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRF----DEHIRTAYNINVKGTQTIL 205 (366)
Q Consensus 132 ~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~----~~~~~~~~~~nv~~~~~ll 205 (366)
..+|+.+.. .+..++. ++|+|||+|+.... ..+...+++.|+.++.+++
T Consensus 31 -------------------~~~Dl~~~~------~l~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~n~~~~~~ll 85 (306)
T PLN02725 31 -------------------KELDLTRQA------DVEAFFAKEKPTYVILAAAKVGGIHANMTYPADFIRENLQIQTNVI 85 (306)
T ss_pred -------------------ccCCCCCHH------HHHHHHhccCCCEEEEeeeeecccchhhhCcHHHHHHHhHHHHHHH
Confidence 147888765 6777766 57999999986432 2345678899999999999
Q ss_pred HHHHhcCCCcEEEEeeCcceecCc--cccccccCCC-CCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHH
Q psy17528 206 ALAKRMKGLKSFVHVSTAYCNCDR--KFIAEKFYPP-VFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAED 282 (366)
Q Consensus 206 ~~a~~~~~~~~~v~iSS~~~~~~~--~~~~e~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~ 282 (366)
+++++. ++++||++||+++|+.. .+++|+.... |. .+....|+.+|..+|+
T Consensus 86 ~~~~~~-~~~~~i~~SS~~vyg~~~~~~~~E~~~~~~~~-------------------------~p~~~~Y~~sK~~~e~ 139 (306)
T PLN02725 86 DAAYRH-GVKKLLFLGSSCIYPKFAPQPIPETALLTGPP-------------------------EPTNEWYAIAKIAGIK 139 (306)
T ss_pred HHHHHc-CCCeEEEeCceeecCCCCCCCCCHHHhccCCC-------------------------CCCcchHHHHHHHHHH
Confidence 999986 78899999999998743 2344432110 10 0001359999999999
Q ss_pred HHHHhc--CCCCEEEEecCccccCCCCCCCccccccchH-HHHHHHHhcCcceee-cCCCCcccCcccHHHHHHHHHHHH
Q psy17528 283 LVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGV-MALALGAGTGLIRVV-QTDPNISMDVVPGDRVINAMAALA 358 (366)
Q Consensus 283 ~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~l-~~~~~~~~~~v~vdDva~ai~~~~ 358 (366)
+++.+. .+++++++||+.||||+....+.-...+..+ ..+......+.+..+ +++++..++|+|++|+|++++.++
T Consensus 140 ~~~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dv~~~~~~~~ 219 (306)
T PLN02725 140 MCQAYRIQYGWDAISGMPTNLYGPHDNFHPENSHVIPALIRRFHEAKANGAPEVVVWGSGSPLREFLHVDDLADAVVFLM 219 (306)
T ss_pred HHHHHHHHhCCCEEEEEecceeCCCCCCCCCCCcccHHHHHHHHHHhhcCCCeEEEcCCCCeeeccccHHHHHHHHHHHH
Confidence 887765 6899999999999999753211100001111 122233345555544 677888999999999999999988
Q ss_pred Hhh
Q psy17528 359 WYF 361 (366)
Q Consensus 359 ~~~ 361 (366)
+..
T Consensus 220 ~~~ 222 (306)
T PLN02725 220 RRY 222 (306)
T ss_pred hcc
Confidence 764
|
|
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.6e-23 Score=199.52 Aligned_cols=228 Identities=16% Similarity=0.159 Sum_probs=159.0
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
|+|||||||||||++++++|++.| ++|++++|...... ..+.. +..
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~~~~~~~~--~~~~~---------~~~-------------------- 46 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNG---HDVVILDNLCNSKR--SVLPV---------IER-------------------- 46 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCC---CeEEEEecCCCchH--hHHHH---------HHH--------------------
Confidence 479999999999999999999998 78888877532211 11100 000
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccCh---hhhHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRF---DEHIRTAYNINVKGTQT 203 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~---~~~~~~~~~~nv~~~~~ 203 (366)
. ...++.++.+|+.+.+ .+..++. ++|+|||+|+.... .....+.++.|+.++.+
T Consensus 47 ------------~--~~~~~~~~~~Dl~d~~------~~~~~~~~~~~d~vvh~a~~~~~~~~~~~~~~~~~~n~~~~~~ 106 (338)
T PRK10675 47 ------------L--GGKHPTFVEGDIRNEA------LLTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLR 106 (338)
T ss_pred ------------h--cCCCceEEEccCCCHH------HHHHHHhcCCCCEEEECCccccccchhhCHHHHHHHHHHHHHH
Confidence 0 1135678899999876 6777765 68999999987542 22345688999999999
Q ss_pred HHHHHHhcCCCcEEEEeeCcceecCcc--ccccccCC-CCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHH
Q psy17528 204 ILALAKRMKGLKSFVHVSTAYCNCDRK--FIAEKFYP-PVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATA 280 (366)
Q Consensus 204 ll~~a~~~~~~~~~v~iSS~~~~~~~~--~~~e~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~ 280 (366)
+++++++. ++++||++||+.+|+... +++|+... .| .+.|+.+|..+
T Consensus 107 l~~~~~~~-~~~~~v~~Ss~~~yg~~~~~~~~E~~~~~~p-----------------------------~~~Y~~sK~~~ 156 (338)
T PRK10675 107 LISAMRAA-NVKNLIFSSSATVYGDQPKIPYVESFPTGTP-----------------------------QSPYGKSKLMV 156 (338)
T ss_pred HHHHHHHc-CCCEEEEeccHHhhCCCCCCccccccCCCCC-----------------------------CChhHHHHHHH
Confidence 99999986 788999999998886432 34444322 12 27899999999
Q ss_pred HHHHHHhc---CCCCEEEEecCccccCCCCCCCcccc-c-cchHHHHHHHHhcCc--ceeecC------CCCcccCcccH
Q psy17528 281 EDLVRQVG---HELPICVLRPSIVFPTLQEPMPLWIK-G-FNGVMALALGAGTGL--IRVVQT------DPNISMDVVPG 347 (366)
Q Consensus 281 E~~l~~~~---~gl~~~ilRp~~v~G~~~~~~~~~~~-~-~~~~~~~~~~~~~g~--~~~l~~------~~~~~~~~v~v 347 (366)
|++++.+. .+++++++|++++||+.....-+... . ...+..++..+..+. ...+++ ++.+.++|+|+
T Consensus 157 E~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~v 236 (338)
T PRK10675 157 EQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHV 236 (338)
T ss_pred HHHHHHHHHhcCCCcEEEEEeeeecCCCcccccccCCCCChhHHHHHHHHHHhcCCCceEEeCCcCCCCCCcEEEeeEEH
Confidence 99998875 37899999999999985321111000 0 012233444444332 233333 56788999999
Q ss_pred HHHHHHHHHHHHh
Q psy17528 348 DRVINAMAALAWY 360 (366)
Q Consensus 348 dDva~ai~~~~~~ 360 (366)
+|+|++++.+++.
T Consensus 237 ~D~a~~~~~~~~~ 249 (338)
T PRK10675 237 MDLADGHVAAMEK 249 (338)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998875
|
|
| >KOG0747|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.5e-24 Score=198.92 Aligned_cols=228 Identities=22% Similarity=0.211 Sum_probs=178.8
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
.+.++|||++||||++.+..+... +.-.+++.++.-.=-.. .+.+
T Consensus 6 ~~~vlItgg~gfi~Sn~~~~~~~~-~p~~~~v~idkL~~~s~-~~~l--------------------------------- 50 (331)
T KOG0747|consen 6 EKNVLITGGAGFIGSNFINYLVDK-YPDYKFVNLDKLDYCSN-LKNL--------------------------------- 50 (331)
T ss_pred cceEEEecCcCcchhhhhhhcccC-CCCCcEEEEeecccccc-cchh---------------------------------
Confidence 379999999999999999999998 45566667666321111 1111
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH--hCcCEEEEcCcccChhhhH---HHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI--SQTTIIFHIAATVRFDEHI---RTAYNINVKGTQ 202 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~--~~~d~Vih~a~~~~~~~~~---~~~~~~nv~~~~ 202 (366)
+.....++..++.+|+.+.. .+..++ ..+|.|+|.|+..+++... -++.+.|+.++.
T Consensus 51 ------------~~~~n~p~ykfv~~di~~~~------~~~~~~~~~~id~vihfaa~t~vd~s~~~~~~~~~nnil~t~ 112 (331)
T KOG0747|consen 51 ------------EPVRNSPNYKFVEGDIADAD------LVLYLFETEEIDTVIHFAAQTHVDRSFGDSFEFTKNNILSTH 112 (331)
T ss_pred ------------hhhccCCCceEeeccccchH------HHHhhhccCchhhhhhhHhhhhhhhhcCchHHHhcCCchhhh
Confidence 12234578899999999976 344444 3789999999987766533 456778999999
Q ss_pred HHHHHHHhcCCCcEEEEeeCcceecCcc--c-cccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHH
Q psy17528 203 TILALAKRMKGLKSFVHVSTAYCNCDRK--F-IAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKAT 279 (366)
Q Consensus 203 ~ll~~a~~~~~~~~~v~iSS~~~~~~~~--~-~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~ 279 (366)
.|++.+...+++++|||+||..|||+.. . ..|...+.|- ++|+.+|+.
T Consensus 113 ~Lle~~~~sg~i~~fvhvSTdeVYGds~~~~~~~E~s~~nPt-----------------------------npyAasKaA 163 (331)
T KOG0747|consen 113 VLLEAVRVSGNIRRFVHVSTDEVYGDSDEDAVVGEASLLNPT-----------------------------NPYAASKAA 163 (331)
T ss_pred hHHHHHHhccCeeEEEEecccceecCccccccccccccCCCC-----------------------------CchHHHHHH
Confidence 9999999988999999999999998643 2 2255555553 889999999
Q ss_pred HHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHH
Q psy17528 280 AEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAAL 357 (366)
Q Consensus 280 ~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~ 357 (366)
+|..++++. .+++++++|.++||||++.+. ..+..|+..+..+....+.++|...++|+||+|+++|+.++
T Consensus 164 aE~~v~Sy~~sy~lpvv~~R~nnVYGP~q~~~-------klipkFi~l~~~~~~~~i~g~g~~~rs~l~veD~~ea~~~v 236 (331)
T KOG0747|consen 164 AEMLVRSYGRSYGLPVVTTRMNNVYGPNQYPE-------KLIPKFIKLAMRGKEYPIHGDGLQTRSYLYVEDVSEAFKAV 236 (331)
T ss_pred HHHHHHHHhhccCCcEEEEeccCccCCCcChH-------HHhHHHHHHHHhCCCcceecCcccceeeEeHHHHHHHHHHH
Confidence 999999998 899999999999999998752 22355677677788889999999999999999999999998
Q ss_pred HHhhhhcC
Q psy17528 358 AWYFLFSC 365 (366)
Q Consensus 358 ~~~~~~~~ 365 (366)
++. +..|
T Consensus 237 ~~K-g~~g 243 (331)
T KOG0747|consen 237 LEK-GELG 243 (331)
T ss_pred Hhc-CCcc
Confidence 887 4444
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.1e-23 Score=197.36 Aligned_cols=215 Identities=22% Similarity=0.250 Sum_probs=160.0
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
++|+||||+||||+++++.|++.| ++|++++|+.+...
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g---~~V~~~~r~~~~~~--------------------------------------- 38 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQG---EEVRVLVRPTSDRR--------------------------------------- 38 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCC---CEEEEEEecCcccc---------------------------------------
Confidence 479999999999999999999998 78999999754211
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccC-hhhhHHHHHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVR-FDEHIRTAYNINVKGTQTILAL 207 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~-~~~~~~~~~~~nv~~~~~ll~~ 207 (366)
......+.++.+|+.+.+ .+..+++++|+|||+|+... ....+...++.|+.++.+++++
T Consensus 39 -------------~~~~~~~~~~~~D~~~~~------~l~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~ 99 (328)
T TIGR03466 39 -------------NLEGLDVEIVEGDLRDPA------SLRKAVAGCRALFHVAADYRLWAPDPEEMYAANVEGTRNLLRA 99 (328)
T ss_pred -------------ccccCCceEEEeeCCCHH------HHHHHHhCCCEEEEeceecccCCCCHHHHHHHHHHHHHHHHHH
Confidence 001136788999999976 78888899999999998643 2345677889999999999999
Q ss_pred HHhcCCCcEEEEeeCcceecCc---cccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHH
Q psy17528 208 AKRMKGLKSFVHVSTAYCNCDR---KFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLV 284 (366)
Q Consensus 208 a~~~~~~~~~v~iSS~~~~~~~---~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l 284 (366)
+.+. ++++||++||.++|+.. .+.+|+....|. ...+.|+.+|...|+++
T Consensus 100 ~~~~-~~~~~v~~SS~~~~~~~~~~~~~~e~~~~~~~--------------------------~~~~~Y~~sK~~~e~~~ 152 (328)
T TIGR03466 100 ALEA-GVERVVYTSSVATLGVRGDGTPADETTPSSLD--------------------------DMIGHYKRSKFLAEQAA 152 (328)
T ss_pred HHHh-CCCeEEEEechhhcCcCCCCCCcCccCCCCcc--------------------------cccChHHHHHHHHHHHH
Confidence 9886 78899999999888642 234444322221 11257999999999999
Q ss_pred HHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhh
Q psy17528 285 RQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 285 ~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
+++. .+++++++||+.+||++...... ...++.....+...... +...+|+|++|+|++++.+++..
T Consensus 153 ~~~~~~~~~~~~ilR~~~~~G~~~~~~~~-------~~~~~~~~~~~~~~~~~---~~~~~~i~v~D~a~a~~~~~~~~ 221 (328)
T TIGR03466 153 LEMAAEKGLPVVIVNPSTPIGPRDIKPTP-------TGRIIVDFLNGKMPAYV---DTGLNLVHVDDVAEGHLLALERG 221 (328)
T ss_pred HHHHHhcCCCEEEEeCCccCCCCCCCCCc-------HHHHHHHHHcCCCceee---CCCcceEEHHHHHHHHHHHHhCC
Confidence 9876 58999999999999997632110 11233344443332222 23468999999999999988764
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-22 Score=192.90 Aligned_cols=193 Identities=24% Similarity=0.230 Sum_probs=147.3
Q ss_pred eEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccccc
Q psy17528 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNYF 129 (366)
Q Consensus 50 ~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (366)
+|||||||||||++++++|++.| ++|++++|+
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g---~~v~~~~r~--------------------------------------------- 32 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEG---RVVVALTSS--------------------------------------------- 32 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcC---CEEEEeCCc---------------------------------------------
Confidence 58999999999999999999998 788887774
Q ss_pred chhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCc--CEEEEcCcccChh---hhHHHHHHHHHHHHHHH
Q psy17528 130 NDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQT--TIIFHIAATVRFD---EHIRTAYNINVKGTQTI 204 (366)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~--d~Vih~a~~~~~~---~~~~~~~~~nv~~~~~l 204 (366)
.+|+.+.+ .+..++.++ |+|||+|+..... ......+++|+.++.++
T Consensus 33 ----------------------~~d~~~~~------~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l 84 (287)
T TIGR01214 33 ----------------------QLDLTDPE------ALERLLRAIRPDAVVNTAAYTDVDGAESDPEKAFAVNALAPQNL 84 (287)
T ss_pred ----------------------ccCCCCHH------HHHHHHHhCCCCEEEECCccccccccccCHHHHHHHHHHHHHHH
Confidence 24666655 677777754 9999999975432 24566889999999999
Q ss_pred HHHHHhcCCCcEEEEeeCcceecCc--cccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHH
Q psy17528 205 LALAKRMKGLKSFVHVSTAYCNCDR--KFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAED 282 (366)
Q Consensus 205 l~~a~~~~~~~~~v~iSS~~~~~~~--~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~ 282 (366)
++++.+. +. +||++||+++|+.. .+++|+..+.|. +.|+.+|..+|+
T Consensus 85 ~~~~~~~-~~-~~v~~Ss~~vy~~~~~~~~~E~~~~~~~-----------------------------~~Y~~~K~~~E~ 133 (287)
T TIGR01214 85 ARAAARH-GA-RLVHISTDYVFDGEGKRPYREDDATNPL-----------------------------NVYGQSKLAGEQ 133 (287)
T ss_pred HHHHHHc-CC-eEEEEeeeeeecCCCCCCCCCCCCCCCc-----------------------------chhhHHHHHHHH
Confidence 9999876 43 89999999998653 245555433322 789999999999
Q ss_pred HHHHhcCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhh
Q psy17528 283 LVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 283 ~l~~~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
.++.. +.+++++||++|||+.... .....++..+..+....+.+ +..++++|++|+|++++.++..+
T Consensus 134 ~~~~~--~~~~~ilR~~~v~G~~~~~--------~~~~~~~~~~~~~~~~~~~~--~~~~~~v~v~Dva~a~~~~~~~~ 200 (287)
T TIGR01214 134 AIRAA--GPNALIVRTSWLYGGGGGR--------NFVRTMLRLAGRGEELRVVD--DQIGSPTYAKDLARVIAALLQRL 200 (287)
T ss_pred HHHHh--CCCeEEEEeeecccCCCCC--------CHHHHHHHHhhcCCCceEec--CCCcCCcCHHHHHHHHHHHHhhc
Confidence 99887 5899999999999997421 11233455555555444443 45789999999999999999875
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-22 Score=194.93 Aligned_cols=216 Identities=19% Similarity=0.124 Sum_probs=152.4
Q ss_pred EEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccccc
Q psy17528 51 IFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNYFN 130 (366)
Q Consensus 51 ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (366)
|||||||||||++++++|++.|+ +.|+++.|..... ++.+
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~--~~v~~~~~~~~~~----~~~~---------------------------------- 40 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGI--TDILVVDNLRDGH----KFLN---------------------------------- 40 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCC--ceEEEEecCCCch----hhhh----------------------------------
Confidence 69999999999999999999972 2677777754311 0000
Q ss_pred hhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH----hCcCEEEEcCcccCh-hhhHHHHHHHHHHHHHHHH
Q psy17528 131 DAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI----SQTTIIFHIAATVRF-DEHIRTAYNINVKGTQTIL 205 (366)
Q Consensus 131 ~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~----~~~d~Vih~a~~~~~-~~~~~~~~~~nv~~~~~ll 205 (366)
-....+.+|+.+.+ .+..+. .++|+|||+|+.... ..+....+++|+.++.+++
T Consensus 41 ---------------~~~~~~~~d~~~~~------~~~~~~~~~~~~~D~vvh~A~~~~~~~~~~~~~~~~n~~~~~~ll 99 (314)
T TIGR02197 41 ---------------LADLVIADYIDKED------FLDRLEKGAFGKIEAIFHQGACSDTTETDGEYMMENNYQYSKRLL 99 (314)
T ss_pred ---------------hhheeeeccCcchh------HHHHHHhhccCCCCEEEECccccCccccchHHHHHHHHHHHHHHH
Confidence 00124567777665 455554 379999999996532 2355678899999999999
Q ss_pred HHHHhcCCCcEEEEeeCcceecCcc-ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHH
Q psy17528 206 ALAKRMKGLKSFVHVSTAYCNCDRK-FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLV 284 (366)
Q Consensus 206 ~~a~~~~~~~~~v~iSS~~~~~~~~-~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l 284 (366)
+++.+. +. +||++||+++|+... ++.|+..+. ...+.|+.+|..+|.++
T Consensus 100 ~~~~~~-~~-~~v~~SS~~vy~~~~~~~~e~~~~~----------------------------~p~~~Y~~sK~~~e~~~ 149 (314)
T TIGR02197 100 DWCAEK-GI-PFIYASSAATYGDGEAGFREGRELE----------------------------RPLNVYGYSKFLFDQYV 149 (314)
T ss_pred HHHHHh-CC-cEEEEccHHhcCCCCCCcccccCcC----------------------------CCCCHHHHHHHHHHHHH
Confidence 999886 54 799999999987532 233322110 11278999999999999
Q ss_pred HHhc----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeec------CCCCcccCcccHHHHHHHH
Q psy17528 285 RQVG----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQ------TDPNISMDVVPGDRVINAM 354 (366)
Q Consensus 285 ~~~~----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~------~~~~~~~~~v~vdDva~ai 354 (366)
+++. .+++++++||+.||||+..+..... ..+..++..+..+....++ ++++..++|+|++|+++++
T Consensus 150 ~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~i 226 (314)
T TIGR02197 150 RRRVLPEALSAQVVGLRYFNVYGPREYHKGKMA---SVAFHLFNQIKAGGNVKLFKSSEGFKDGEQLRDFVYVKDVVDVN 226 (314)
T ss_pred HHHhHhhccCCceEEEEEeeccCCCCCCCCCcc---cHHHHHHHHHhcCCCeEEecCccccCCCCceeeeEEHHHHHHHH
Confidence 8642 3578999999999999865322111 1234456666666655443 4577789999999999999
Q ss_pred HHHHHh
Q psy17528 355 AALAWY 360 (366)
Q Consensus 355 ~~~~~~ 360 (366)
+.++..
T Consensus 227 ~~~~~~ 232 (314)
T TIGR02197 227 LWLLEN 232 (314)
T ss_pred HHHHhc
Confidence 998876
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >KOG1430|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.9e-22 Score=195.80 Aligned_cols=224 Identities=23% Similarity=0.305 Sum_probs=172.8
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
++.+++||||+||+|.||+++|++++ ....|.+++.........+..
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~-~~~~irv~D~~~~~~~~~~e~-------------------------------- 49 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENE-LKLEIRVVDKTPTQSNLPAEL-------------------------------- 49 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhcc-cccEEEEeccCccccccchhh--------------------------------
Confidence 56799999999999999999999996 357888888875421100000
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccC--hhh-hHHHHHHHHHHHHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVR--FDE-HIRTAYNINVKGTQT 203 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~--~~~-~~~~~~~~nv~~~~~ 203 (366)
.......++++.+|+.+.. .+...+.++ .|+|+|+... +.. +.+..+++|+.||++
T Consensus 50 --------------~~~~~~~v~~~~~D~~~~~------~i~~a~~~~-~Vvh~aa~~~~~~~~~~~~~~~~vNV~gT~n 108 (361)
T KOG1430|consen 50 --------------TGFRSGRVTVILGDLLDAN------SISNAFQGA-VVVHCAASPVPDFVENDRDLAMRVNVNGTLN 108 (361)
T ss_pred --------------hcccCCceeEEecchhhhh------hhhhhccCc-eEEEeccccCccccccchhhheeecchhHHH
Confidence 0002468899999999987 788899999 8888887542 233 477889999999999
Q ss_pred HHHHHHhcCCCcEEEEeeCcceecCccc--cccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHH
Q psy17528 204 ILALAKRMKGLKSFVHVSTAYCNCDRKF--IAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAE 281 (366)
Q Consensus 204 ll~~a~~~~~~~~~v~iSS~~~~~~~~~--~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E 281 (366)
++++|.+. +++++||+||.+|+....+ ..+...|.|. .+...|+.||..+|
T Consensus 109 vi~~c~~~-~v~~lIYtSs~~Vvf~g~~~~n~~E~~p~p~--------------------------~~~d~Y~~sKa~aE 161 (361)
T KOG1430|consen 109 VIEACKEL-GVKRLIYTSSAYVVFGGEPIINGDESLPYPL--------------------------KHIDPYGESKALAE 161 (361)
T ss_pred HHHHHHHh-CCCEEEEecCceEEeCCeecccCCCCCCCcc--------------------------ccccccchHHHHHH
Confidence 99999998 9999999999999976654 2222333222 22368999999999
Q ss_pred HHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHH
Q psy17528 282 DLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAW 359 (366)
Q Consensus 282 ~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~ 359 (366)
+++++.. .++.+++|||..||||++... ...++..+..|......++++.+.++++++.|+.|.+.|..
T Consensus 162 ~~Vl~an~~~~l~T~aLR~~~IYGpgd~~~---------~~~i~~~~~~g~~~f~~g~~~~~~~~~~~~Nva~ahilA~~ 232 (361)
T KOG1430|consen 162 KLVLEANGSDDLYTCALRPPGIYGPGDKRL---------LPKIVEALKNGGFLFKIGDGENLNDFTYGENVAWAHILAAR 232 (361)
T ss_pred HHHHHhcCCCCeeEEEEccccccCCCCccc---------cHHHHHHHHccCceEEeeccccccceEEechhHHHHHHHHH
Confidence 9999988 669999999999999998532 13455556677777777788899999999999999887664
Q ss_pred h
Q psy17528 360 Y 360 (366)
Q Consensus 360 ~ 360 (366)
.
T Consensus 233 a 233 (361)
T KOG1430|consen 233 A 233 (361)
T ss_pred H
Confidence 3
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-22 Score=193.49 Aligned_cols=195 Identities=16% Similarity=0.164 Sum_probs=145.9
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
|+|+|||||||||++++++|++.| ++|.+++|+.+... .+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g---~~V~~l~R~~~~~~---~l---------------------------------- 40 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEG---YQVRCLVRNLRKAS---FL---------------------------------- 40 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC---CeEEEEEcChHHhh---hH----------------------------------
Confidence 489999999999999999999998 89999999743210 00
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALA 208 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll~~a 208 (366)
....++++.+|+.+++ .+..++.++|+|||+++... .......++|+.++.++++++
T Consensus 41 ---------------~~~~v~~v~~Dl~d~~------~l~~al~g~d~Vi~~~~~~~--~~~~~~~~~~~~~~~~l~~aa 97 (317)
T CHL00194 41 ---------------KEWGAELVYGDLSLPE------TLPPSFKGVTAIIDASTSRP--SDLYNAKQIDWDGKLALIEAA 97 (317)
T ss_pred ---------------hhcCCEEEECCCCCHH------HHHHHHCCCCEEEECCCCCC--CCccchhhhhHHHHHHHHHHH
Confidence 0136789999999987 78889999999999976432 233456788999999999999
Q ss_pred HhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHHhc
Q psy17528 209 KRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVG 288 (366)
Q Consensus 209 ~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~ 288 (366)
++. ++++|||+||..+... + ...|..+|..+|+.+++.
T Consensus 98 ~~~-gvkr~I~~Ss~~~~~~---------~-------------------------------~~~~~~~K~~~e~~l~~~- 135 (317)
T CHL00194 98 KAA-KIKRFIFFSILNAEQY---------P-------------------------------YIPLMKLKSDIEQKLKKS- 135 (317)
T ss_pred HHc-CCCEEEEecccccccc---------C-------------------------------CChHHHHHHHHHHHHHHc-
Confidence 987 8999999999543200 0 156889999999998765
Q ss_pred CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhhhh
Q psy17528 289 HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYFLF 363 (366)
Q Consensus 289 ~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~~ 363 (366)
+++++++||+.+|+.... .+......+.+..+. .+...++|+|++|+|++++.++..+..
T Consensus 136 -~l~~tilRp~~~~~~~~~-------------~~~~~~~~~~~~~~~-~~~~~~~~i~v~Dva~~~~~~l~~~~~ 195 (317)
T CHL00194 136 -GIPYTIFRLAGFFQGLIS-------------QYAIPILEKQPIWIT-NESTPISYIDTQDAAKFCLKSLSLPET 195 (317)
T ss_pred -CCCeEEEeecHHhhhhhh-------------hhhhhhccCCceEec-CCCCccCccCHHHHHHHHHHHhcCccc
Confidence 799999999988853110 011112233333333 456678999999999999999876543
|
|
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=188.37 Aligned_cols=195 Identities=24% Similarity=0.238 Sum_probs=142.8
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
|+||||||+|+||++|++.|.+.| +.|+.+.|.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~---~~v~~~~r~-------------------------------------------- 33 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERG---YEVIATSRS-------------------------------------------- 33 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTS---EEEEEESTT--------------------------------------------
T ss_pred CEEEEECCCCHHHHHHHHHHhhCC---CEEEEeCch--------------------------------------------
Confidence 689999999999999999999887 778777653
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccCh---hhhHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRF---DEHIRTAYNINVKGTQT 203 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~---~~~~~~~~~~nv~~~~~ 203 (366)
..|+.+.+ .+..+++ +.|+|||+||.... +.+++..+++|+.++.+
T Consensus 34 -----------------------~~dl~d~~------~~~~~~~~~~pd~Vin~aa~~~~~~ce~~p~~a~~iN~~~~~~ 84 (286)
T PF04321_consen 34 -----------------------DLDLTDPE------AVAKLLEAFKPDVVINCAAYTNVDACEKNPEEAYAINVDATKN 84 (286)
T ss_dssp -----------------------CS-TTSHH------HHHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTHHHHH
T ss_pred -----------------------hcCCCCHH------HHHHHHHHhCCCeEeccceeecHHhhhhChhhhHHHhhHHHHH
Confidence 45666655 6777766 58999999998653 45678899999999999
Q ss_pred HHHHHHhcCCCcEEEEeeCcceecCc--cccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHH
Q psy17528 204 ILALAKRMKGLKSFVHVSTAYCNCDR--KFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAE 281 (366)
Q Consensus 204 ll~~a~~~~~~~~~v~iSS~~~~~~~--~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E 281 (366)
++++|.+. + .++||+||.+||... .++.|+..+.|. +.||.+|+.+|
T Consensus 85 la~~~~~~-~-~~li~~STd~VFdG~~~~~y~E~d~~~P~-----------------------------~~YG~~K~~~E 133 (286)
T PF04321_consen 85 LAEACKER-G-ARLIHISTDYVFDGDKGGPYTEDDPPNPL-----------------------------NVYGRSKLEGE 133 (286)
T ss_dssp HHHHHHHC-T--EEEEEEEGGGS-SSTSSSB-TTS----S-----------------------------SHHHHHHHHHH
T ss_pred HHHHHHHc-C-CcEEEeeccEEEcCCcccccccCCCCCCC-----------------------------CHHHHHHHHHH
Confidence 99999985 3 399999999999643 357888777765 89999999999
Q ss_pred HHHHHhcCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhh
Q psy17528 282 DLVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 282 ~~l~~~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
+.+++.. -+..|+|++.+||+... .+ ..+++.....+....+.. +..+.+++++|+|++++.++++.
T Consensus 134 ~~v~~~~--~~~~IlR~~~~~g~~~~---~~------~~~~~~~~~~~~~i~~~~--d~~~~p~~~~dlA~~i~~l~~~~ 200 (286)
T PF04321_consen 134 QAVRAAC--PNALILRTSWVYGPSGR---NF------LRWLLRRLRQGEPIKLFD--DQYRSPTYVDDLARVILELIEKN 200 (286)
T ss_dssp HHHHHH---SSEEEEEE-SEESSSSS---SH------HHHHHHHHHCTSEEEEES--SCEE--EEHHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCEEEEecceecccCCC---ch------hhhHHHHHhcCCeeEeeC--CceeCCEEHHHHHHHHHHHHHhc
Confidence 9999975 38999999999999332 11 244556666777766653 56789999999999999999887
Q ss_pred hh
Q psy17528 362 LF 363 (366)
Q Consensus 362 ~~ 363 (366)
..
T Consensus 201 ~~ 202 (286)
T PF04321_consen 201 LS 202 (286)
T ss_dssp HH
T ss_pred cc
Confidence 64
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-21 Score=221.20 Aligned_cols=255 Identities=24% Similarity=0.288 Sum_probs=176.3
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhC-CCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCC-PQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g-~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
.++|+|||||||+|++++++|++.+ ....+|+++.|..+.....+++.+.+..+.
T Consensus 971 ~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~------------------------ 1026 (1389)
T TIGR03443 971 PITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYG------------------------ 1026 (1389)
T ss_pred CceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhC------------------------
Confidence 5899999999999999999999885 135799999998765444445444322210
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILA 206 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll~ 206 (366)
........++.++.+|+.++.+|++...+..+..++|+|||+|+.+++...+..+...|+.|+.++++
T Consensus 1027 ------------~~~~~~~~~i~~~~gDl~~~~lgl~~~~~~~l~~~~d~iiH~Aa~~~~~~~~~~~~~~nv~gt~~ll~ 1094 (1389)
T TIGR03443 1027 ------------IWDEEWASRIEVVLGDLSKEKFGLSDEKWSDLTNEVDVIIHNGALVHWVYPYSKLRDANVIGTINVLN 1094 (1389)
T ss_pred ------------CCchhhhcceEEEeccCCCccCCcCHHHHHHHHhcCCEEEECCcEecCccCHHHHHHhHHHHHHHHHH
Confidence 00111234789999999999999999999888889999999999988776777777889999999999
Q ss_pred HHHhcCCCcEEEEeeCcceecCccccc--cccC---CCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHH
Q psy17528 207 LAKRMKGLKSFVHVSTAYCNCDRKFIA--EKFY---PPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAE 281 (366)
Q Consensus 207 ~a~~~~~~~~~v~iSS~~~~~~~~~~~--e~~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E 281 (366)
++.+. ++++|+|+||..+++...... +... ..+..++ + ...+ ......++|+.+|+.+|
T Consensus 1095 ~a~~~-~~~~~v~vSS~~v~~~~~~~~~~~~~~~~~~~~~~e~------------~--~~~~-~~~~~~~~Y~~sK~~aE 1158 (1389)
T TIGR03443 1095 LCAEG-KAKQFSFVSSTSALDTEYYVNLSDELVQAGGAGIPES------------D--DLMG-SSKGLGTGYGQSKWVAE 1158 (1389)
T ss_pred HHHhC-CCceEEEEeCeeecCcccccchhhhhhhccCCCCCcc------------c--cccc-ccccCCCChHHHHHHHH
Confidence 99876 788999999998885422110 0000 0000000 0 0000 11122378999999999
Q ss_pred HHHHHhc-CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCc-ceeecCCCCcccCcccHHHHHHHHHHHHH
Q psy17528 282 DLVRQVG-HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGL-IRVVQTDPNISMDVVPGDRVINAMAALAW 359 (366)
Q Consensus 282 ~~l~~~~-~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~l~~~~~~~~~~v~vdDva~ai~~~~~ 359 (366)
+++..+. .|++++++||++|||+..... +. ...++....++. ......+....++|++|||++++++.++.
T Consensus 1159 ~l~~~~~~~g~~~~i~Rpg~v~G~~~~g~--~~-----~~~~~~~~~~~~~~~~~~p~~~~~~~~~~Vddva~ai~~~~~ 1231 (1389)
T TIGR03443 1159 YIIREAGKRGLRGCIVRPGYVTGDSKTGA--TN-----TDDFLLRMLKGCIQLGLIPNINNTVNMVPVDHVARVVVAAAL 1231 (1389)
T ss_pred HHHHHHHhCCCCEEEECCCccccCCCcCC--CC-----chhHHHHHHHHHHHhCCcCCCCCccccccHHHHHHHHHHHHh
Confidence 9998876 789999999999999975432 11 111222222211 01112234557899999999999999886
Q ss_pred hh
Q psy17528 360 YF 361 (366)
Q Consensus 360 ~~ 361 (366)
++
T Consensus 1232 ~~ 1233 (1389)
T TIGR03443 1232 NP 1233 (1389)
T ss_pred CC
Confidence 54
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >KOG1371|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.2e-22 Score=188.75 Aligned_cols=231 Identities=21% Similarity=0.190 Sum_probs=167.4
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCC-cCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGS-TSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
+++||||||+||||+|.+.+|++.| ..|++++.-... ....+|+++++.
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~g---y~v~~vDNl~n~~~~sl~r~~~l~~--------------------------- 51 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRG---YGVVIVDNLNNSYLESLKRVRQLLG--------------------------- 51 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCC---CcEEEEecccccchhHHHHHHHhcC---------------------------
Confidence 5789999999999999999999999 666666664322 222334433221
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccChhh---hHHHHHHHHHHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRFDE---HIRTAYNINVKGT 201 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~~~---~~~~~~~~nv~~~ 201 (366)
...++.++.+|++|.. .++++++ .+|.|+|.|+.....+ .+...+..|+.|+
T Consensus 52 -----------------~~~~v~f~~~Dl~D~~------~L~kvF~~~~fd~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gt 108 (343)
T KOG1371|consen 52 -----------------EGKSVFFVEGDLNDAE------ALEKLFSEVKFDAVMHFAALAAVGESMENPLSYYHNNIAGT 108 (343)
T ss_pred -----------------CCCceEEEEeccCCHH------HHHHHHhhcCCceEEeehhhhccchhhhCchhheehhhhhH
Confidence 1479999999999987 7888887 6899999999865433 4456888899999
Q ss_pred HHHHHHHHhcCCCcEEEEeeCcceecCcc--ccccccCCC-CCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHH
Q psy17528 202 QTILALAKRMKGLKSFVHVSTAYCNCDRK--FIAEKFYPP-VFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKA 278 (366)
Q Consensus 202 ~~ll~~a~~~~~~~~~v~iSS~~~~~~~~--~~~e~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~ 278 (366)
.++++.+++. +++.+|+.||+.+|+... |+.|+.... | .++|+.+|.
T Consensus 109 lnlLe~~~~~-~~~~~V~sssatvYG~p~~ip~te~~~t~~p-----------------------------~~pyg~tK~ 158 (343)
T KOG1371|consen 109 LNLLEVMKAH-NVKALVFSSSATVYGLPTKVPITEEDPTDQP-----------------------------TNPYGKTKK 158 (343)
T ss_pred HHHHHHHHHc-CCceEEEecceeeecCcceeeccCcCCCCCC-----------------------------CCcchhhhH
Confidence 9999999998 699999999999998765 455553332 2 289999999
Q ss_pred HHHHHHHHhc--CCCCEEEEecCcccc--CCCCCCCccccccchHHHHHHHHhc---------CcceeecCCCCcccCcc
Q psy17528 279 TAEDLVRQVG--HELPICVLRPSIVFP--TLQEPMPLWIKGFNGVMALALGAGT---------GLIRVVQTDPNISMDVV 345 (366)
Q Consensus 279 ~~E~~l~~~~--~gl~~~ilRp~~v~G--~~~~~~~~~~~~~~~~~~~~~~~~~---------g~~~~l~~~~~~~~~~v 345 (366)
..|.+..... .++.++.||.++++| |+..+.......-+..+..+.+... |.... ..+|+..++++
T Consensus 159 ~iE~i~~d~~~~~~~~~~~LRyfn~~ga~p~Gr~ge~p~~~~nnl~p~v~~vaigr~~~l~v~g~d~~-t~dgt~vrdyi 237 (343)
T KOG1371|consen 159 AIEEIIHDYNKAYGWKVTGLRYFNVIGAHPSGRIGEAPLGIPNNLLPYVFQVAIGRRPNLQVVGRDYT-TIDGTIVRDYI 237 (343)
T ss_pred HHHHHHHhhhccccceEEEEEeccccCccccCccCCCCccCcccccccccchhhcccccceeecCccc-ccCCCeeecce
Confidence 9999999988 568999999999999 4432211110000111112222222 22222 23668999999
Q ss_pred cHHHHHHHHHHHHHhhh
Q psy17528 346 PGDRVINAMAALAWYFL 362 (366)
Q Consensus 346 ~vdDva~ai~~~~~~~~ 362 (366)
++-|.|+..+.|+.+..
T Consensus 238 ~v~Dla~~h~~al~k~~ 254 (343)
T KOG1371|consen 238 HVLDLADGHVAALGKLR 254 (343)
T ss_pred eeEehHHHHHHHhhccc
Confidence 99999999999987764
|
|
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-21 Score=197.28 Aligned_cols=222 Identities=22% Similarity=0.255 Sum_probs=174.1
Q ss_pred cccCCCCcccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCC
Q psy17528 34 LSDETLSPIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNY 113 (366)
Q Consensus 34 ~~~~~~~~~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 113 (366)
+..-..+.+...+++|+||||||+|.||+.+++++++.+ .+++++++|++.+. ..+.+.+. ..
T Consensus 236 pV~~d~~~i~~~~~gK~vLVTGagGSiGsel~~qil~~~--p~~i~l~~~~E~~~---~~i~~el~--------~~---- 298 (588)
T COG1086 236 PVALDTELIGAMLTGKTVLVTGGGGSIGSELCRQILKFN--PKEIILFSRDEYKL---YLIDMELR--------EK---- 298 (588)
T ss_pred CCCCCHHHHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcC--CCEEEEecCchHHH---HHHHHHHH--------hh----
Confidence 333445667788899999999999999999999999995 48999999986532 11222111 11
Q ss_pred CCccccccccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhC--cCEEEEcCcccC---hhh
Q psy17528 114 ADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQ--TTIIFHIAATVR---FDE 188 (366)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~--~d~Vih~a~~~~---~~~ 188 (366)
.+ ..++.++.||+.|.+ .+..++++ +|+|+|.||.-+ .+.
T Consensus 299 ---------------------------~~--~~~~~~~igdVrD~~------~~~~~~~~~kvd~VfHAAA~KHVPl~E~ 343 (588)
T COG1086 299 ---------------------------FP--ELKLRFYIGDVRDRD------RVERAMEGHKVDIVFHAAALKHVPLVEY 343 (588)
T ss_pred ---------------------------CC--CcceEEEecccccHH------HHHHHHhcCCCceEEEhhhhccCcchhc
Confidence 11 368889999999988 89999997 999999999755 456
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 189 HIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 189 ~~~~~~~~nv~~~~~ll~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
++.+.+++|+.|+.+++++|.+. ++++||.+||.-+.-+
T Consensus 344 nP~Eai~tNV~GT~nv~~aa~~~-~V~~~V~iSTDKAV~P---------------------------------------- 382 (588)
T COG1086 344 NPEEAIKTNVLGTENVAEAAIKN-GVKKFVLISTDKAVNP---------------------------------------- 382 (588)
T ss_pred CHHHHHHHhhHhHHHHHHHHHHh-CCCEEEEEecCcccCC----------------------------------------
Confidence 88999999999999999999998 9999999999854311
Q ss_pred CCchHHHHHHHHHHHHHHhc---C--CCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG---H--ELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~---~--gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
.|.||.||+.+|.++.++. . +..++++|+|||.|.+..-.| -|-.+..+|.+..+- +++..+=
T Consensus 383 -tNvmGaTKr~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSrGSViP----------lFk~QI~~GgplTvT-dp~mtRy 450 (588)
T COG1086 383 -TNVMGATKRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSRGSVIP----------LFKKQIAEGGPLTVT-DPDMTRF 450 (588)
T ss_pred -chHhhHHHHHHHHHHHHHhhccCCCCcEEEEEEecceecCCCCCHH----------HHHHHHHcCCCcccc-CCCceeE
Confidence 1899999999999999886 2 488999999999999875433 234455677666554 6777788
Q ss_pred cccHHHHHHHHHHHHHh
Q psy17528 344 VVPGDRVINAMAALAWY 360 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~ 360 (366)
|..+.+.++.++.|...
T Consensus 451 fMTI~EAv~LVlqA~a~ 467 (588)
T COG1086 451 FMTIPEAVQLVLQAGAI 467 (588)
T ss_pred EEEHHHHHHHHHHHHhh
Confidence 88888888888766544
|
|
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-20 Score=181.39 Aligned_cols=226 Identities=20% Similarity=0.221 Sum_probs=155.6
Q ss_pred eEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccccc
Q psy17528 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNYF 129 (366)
Q Consensus 50 ~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (366)
+||||||||+||++++++|++.| ++|++++|...... +++..
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g---~~V~~~~~~~~~~~--~~~~~--------------------------------- 42 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESG---HEVVVLDNLSNGSP--EALKR--------------------------------- 42 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCC---CeEEEEeCCCccch--hhhhh---------------------------------
Confidence 58999999999999999999998 67877766432111 11000
Q ss_pred chhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccChh---hhHHHHHHHHHHHHHHH
Q psy17528 130 NDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRFD---EHIRTAYNINVKGTQTI 204 (366)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~~---~~~~~~~~~nv~~~~~l 204 (366)
... ..++.++.+|+.+.+ .+..+++ ++|+|||+||..... ....+.+..|+.++..+
T Consensus 43 -----------~~~-~~~~~~~~~D~~~~~------~~~~~~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l 104 (328)
T TIGR01179 43 -----------GER-ITRVTFVEGDLRDRE------LLDRLFEEHKIDAVIHFAGLIAVGESVQDPLKYYRNNVVNTLNL 104 (328)
T ss_pred -----------hcc-ccceEEEECCCCCHH------HHHHHHHhCCCcEEEECccccCcchhhcCchhhhhhhHHHHHHH
Confidence 000 125778899999877 6777775 689999999975322 23456788899999999
Q ss_pred HHHHHhcCCCcEEEEeeCcceecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHH
Q psy17528 205 LALAKRMKGLKSFVHVSTAYCNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAED 282 (366)
Q Consensus 205 l~~a~~~~~~~~~v~iSS~~~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~ 282 (366)
++++.+. +++++|++||.++|+... +++|+....| .+.|+.+|..+|.
T Consensus 105 ~~~~~~~-~~~~~v~~ss~~~~g~~~~~~~~e~~~~~~-----------------------------~~~y~~sK~~~e~ 154 (328)
T TIGR01179 105 LEAMQQT-GVKKFIFSSSAAVYGEPSSIPISEDSPLGP-----------------------------INPYGRSKLMSER 154 (328)
T ss_pred HHHHHhc-CCCEEEEecchhhcCCCCCCCccccCCCCC-----------------------------CCchHHHHHHHHH
Confidence 9999886 678999999998876432 3444433222 2789999999999
Q ss_pred HHHHhc---CCCCEEEEecCccccCCCCCCCcccc-ccchHHHHHHHHh--cCcceeec------CCCCcccCcccHHHH
Q psy17528 283 LVRQVG---HELPICVLRPSIVFPTLQEPMPLWIK-GFNGVMALALGAG--TGLIRVVQ------TDPNISMDVVPGDRV 350 (366)
Q Consensus 283 ~l~~~~---~gl~~~ilRp~~v~G~~~~~~~~~~~-~~~~~~~~~~~~~--~g~~~~l~------~~~~~~~~~v~vdDv 350 (366)
+++.+. .+++++++||+.+||+......++.. ....+...+.... ......++ .+++..++|||++|+
T Consensus 155 ~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~D~ 234 (328)
T TIGR01179 155 ILRDLSKADPGLSYVILRYFNVAGADPEGTIGEDPPGITHLIPYACQVAVGKRDKLTIFGTDYPTPDGTCVRDYIHVMDL 234 (328)
T ss_pred HHHHHHHhccCCCEEEEecCcccCCCCCCccccCCcccchHHHHHHHHHHhCCCCeEEeCCcccCCCCceEEeeeeHHHH
Confidence 998765 58999999999999996543211110 0111122222222 22222222 245677899999999
Q ss_pred HHHHHHHHHhh
Q psy17528 351 INAMAALAWYF 361 (366)
Q Consensus 351 a~ai~~~~~~~ 361 (366)
+++++.++...
T Consensus 235 a~~~~~~~~~~ 245 (328)
T TIGR01179 235 ADAHLAALEYL 245 (328)
T ss_pred HHHHHHHHhhh
Confidence 99999988753
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.7e-22 Score=188.11 Aligned_cols=210 Identities=25% Similarity=0.321 Sum_probs=148.6
Q ss_pred EEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccccc
Q psy17528 51 IFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNYFN 130 (366)
Q Consensus 51 ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (366)
||||||+|.||+.|+++|++.+| .+|++++|++.. ++.+-. .++..++
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p--~~lil~d~~E~~------l~~l~~-----~l~~~~~------------------- 48 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGP--KKLILFDRDENK------LYELER-----ELRSRFP------------------- 48 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB---SEEEEEES-HHH------HHHHHH-----HCHHHC--------------------
T ss_pred CEEEccccHHHHHHHHHHHhcCC--CeEEEeCCChhH------HHHHHH-----HHhhccc-------------------
Confidence 79999999999999999999964 899999998542 222211 1111100
Q ss_pred hhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccCh---hhhHHHHHHHHHHHHHHHH
Q psy17528 131 DAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRF---DEHIRTAYNINVKGTQTIL 205 (366)
Q Consensus 131 ~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~---~~~~~~~~~~nv~~~~~ll 205 (366)
.......+..+.+|++|.+ .+.++++ ++|+|||.||.-+. +.++.++.++|+.|+++++
T Consensus 49 ----------~~~v~~~~~~vigDvrd~~------~l~~~~~~~~pdiVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~ 112 (293)
T PF02719_consen 49 ----------DPKVRFEIVPVIGDVRDKE------RLNRIFEEYKPDIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVA 112 (293)
T ss_dssp -----------TTCEEEEE--CTSCCHHH------HHHHHTT--T-SEEEE------HHHHCCCHHHHHHHHCHHHHHHH
T ss_pred ----------ccCcccccCceeecccCHH------HHHHHHhhcCCCEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHH
Confidence 0011112345689999987 8899998 89999999998654 3577889999999999999
Q ss_pred HHHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHH
Q psy17528 206 ALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVR 285 (366)
Q Consensus 206 ~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~ 285 (366)
++|.+. ++++||++||.-+..+ .|.||.||+.+|+++.
T Consensus 113 ~aa~~~-~v~~~v~ISTDKAv~P-----------------------------------------tnvmGatKrlaE~l~~ 150 (293)
T PF02719_consen 113 EAAIEH-GVERFVFISTDKAVNP-----------------------------------------TNVMGATKRLAEKLVQ 150 (293)
T ss_dssp HHHHHT-T-SEEEEEEECGCSS-------------------------------------------SHHHHHHHHHHHHHH
T ss_pred HHHHHc-CCCEEEEccccccCCC-----------------------------------------CcHHHHHHHHHHHHHH
Confidence 999997 8999999999754311 1899999999999999
Q ss_pred Hhc--C---CCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHh
Q psy17528 286 QVG--H---ELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWY 360 (366)
Q Consensus 286 ~~~--~---gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~ 360 (366)
... . +..++++|+|||.|.+..-. .-|..+...|.+..+. +++..+=|+.++++++.++.++..
T Consensus 151 ~~~~~~~~~~t~f~~VRFGNVlgS~GSVi----------p~F~~Qi~~g~PlTvT-~p~mtRffmti~EAv~Lvl~a~~~ 219 (293)
T PF02719_consen 151 AANQYSGNSDTKFSSVRFGNVLGSRGSVI----------PLFKKQIKNGGPLTVT-DPDMTRFFMTIEEAVQLVLQAAAL 219 (293)
T ss_dssp HHCCTSSSS--EEEEEEE-EETTGTTSCH----------HHHHHHHHTTSSEEEC-ETT-EEEEE-HHHHHHHHHHHHHH
T ss_pred HHhhhCCCCCcEEEEEEecceecCCCcHH----------HHHHHHHHcCCcceeC-CCCcEEEEecHHHHHHHHHHHHhh
Confidence 988 2 47899999999999876432 3455666788777765 678889999999999999987765
Q ss_pred h
Q psy17528 361 F 361 (366)
Q Consensus 361 ~ 361 (366)
.
T Consensus 220 ~ 220 (293)
T PF02719_consen 220 A 220 (293)
T ss_dssp -
T ss_pred C
Confidence 4
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=99.87 E-value=5e-21 Score=191.82 Aligned_cols=205 Identities=16% Similarity=0.255 Sum_probs=152.7
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
++++|+|||||||||++++++|++.| ++|++++|+.+.........+
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~~G---~~V~~l~R~~~~~~~~~~~~~------------------------------ 105 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVRRG---YNVVAVAREKSGIRGKNGKED------------------------------ 105 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEEechhhccccchhhH------------------------------
Confidence 47899999999999999999999998 789999997643210000000
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh----CcCEEEEcCcccChhhhHHHHHHHHHHHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS----QTTIIFHIAATVRFDEHIRTAYNINVKGTQ 202 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~----~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~ 202 (366)
......+++++.+|+.|.+ .+..+++ ++|+||||++.... .....+++|+.++.
T Consensus 106 --------------~~~~~~~v~~v~~Dl~d~~------~l~~~~~~~~~~~D~Vi~~aa~~~~--~~~~~~~vn~~~~~ 163 (390)
T PLN02657 106 --------------TKKELPGAEVVFGDVTDAD------SLRKVLFSEGDPVDVVVSCLASRTG--GVKDSWKIDYQATK 163 (390)
T ss_pred --------------HhhhcCCceEEEeeCCCHH------HHHHHHHHhCCCCcEEEECCccCCC--CCccchhhHHHHHH
Confidence 0001246889999999987 7888777 59999999885321 12235678999999
Q ss_pred HHHHHHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHH
Q psy17528 203 TILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAED 282 (366)
Q Consensus 203 ~ll~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~ 282 (366)
++++++++. ++++||++||.+++.+ . ..|..+|...|+
T Consensus 164 ~ll~aa~~~-gv~r~V~iSS~~v~~p------------~-----------------------------~~~~~sK~~~E~ 201 (390)
T PLN02657 164 NSLDAGREV-GAKHFVLLSAICVQKP------------L-----------------------------LEFQRAKLKFEA 201 (390)
T ss_pred HHHHHHHHc-CCCEEEEEeeccccCc------------c-----------------------------hHHHHHHHHHHH
Confidence 999999987 7899999999876421 1 468899999999
Q ss_pred HHHHhcCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc-CcccHHHHHHHHHHHHHhh
Q psy17528 283 LVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM-DVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 283 ~l~~~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~-~~v~vdDva~ai~~~~~~~ 361 (366)
.+.....+++++++||+.+||+.. .++.....|.+..++++++..+ .+||++|+|.+++.++..+
T Consensus 202 ~l~~~~~gl~~tIlRp~~~~~~~~--------------~~~~~~~~g~~~~~~GdG~~~~~~~I~v~DlA~~i~~~~~~~ 267 (390)
T PLN02657 202 ELQALDSDFTYSIVRPTAFFKSLG--------------GQVEIVKDGGPYVMFGDGKLCACKPISEADLASFIADCVLDE 267 (390)
T ss_pred HHHhccCCCCEEEEccHHHhcccH--------------HHHHhhccCCceEEecCCcccccCceeHHHHHHHHHHHHhCc
Confidence 988622589999999999997421 1233445667666777777654 5799999999999998765
Q ss_pred h
Q psy17528 362 L 362 (366)
Q Consensus 362 ~ 362 (366)
.
T Consensus 268 ~ 268 (390)
T PLN02657 268 S 268 (390)
T ss_pred c
Confidence 4
|
|
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-20 Score=177.65 Aligned_cols=193 Identities=23% Similarity=0.216 Sum_probs=157.5
Q ss_pred eEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccccc
Q psy17528 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNYF 129 (366)
Q Consensus 50 ~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (366)
+|||||++|++|++|++.|. .+ +.|+.++|.
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~-~~---~~v~a~~~~--------------------------------------------- 32 (281)
T COG1091 2 KILITGANGQLGTELRRALP-GE---FEVIATDRA--------------------------------------------- 32 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC-CC---ceEEeccCc---------------------------------------------
Confidence 49999999999999999997 43 788887774
Q ss_pred chhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccChh---hhHHHHHHHHHHHHHHH
Q psy17528 130 NDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRFD---EHIRTAYNINVKGTQTI 204 (366)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~~---~~~~~~~~~nv~~~~~l 204 (366)
..|+++++ .+.++++ ..|+|||+|+...++ .+++..+.+|..++.++
T Consensus 33 ----------------------~~Ditd~~------~v~~~i~~~~PDvVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~l 84 (281)
T COG1091 33 ----------------------ELDITDPD------AVLEVIRETRPDVVINAAAYTAVDKAESEPELAFAVNATGAENL 84 (281)
T ss_pred ----------------------cccccChH------HHHHHHHhhCCCEEEECccccccccccCCHHHHHHhHHHHHHHH
Confidence 27888887 7888887 579999999987544 45688999999999999
Q ss_pred HHHHHhcCCCcEEEEeeCcceecC-c-cccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHH
Q psy17528 205 LALAKRMKGLKSFVHVSTAYCNCD-R-KFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAED 282 (366)
Q Consensus 205 l~~a~~~~~~~~~v~iSS~~~~~~-~-~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~ 282 (366)
+++|.+.+ . ++||+||.||+.. . .++.|++.+.|. +.||.||+..|.
T Consensus 85 A~aa~~~g-a-~lVhiSTDyVFDG~~~~~Y~E~D~~~P~-----------------------------nvYG~sKl~GE~ 133 (281)
T COG1091 85 ARAAAEVG-A-RLVHISTDYVFDGEKGGPYKETDTPNPL-----------------------------NVYGRSKLAGEE 133 (281)
T ss_pred HHHHHHhC-C-eEEEeecceEecCCCCCCCCCCCCCCCh-----------------------------hhhhHHHHHHHH
Confidence 99999863 3 8999999999954 3 378999988886 899999999999
Q ss_pred HHHHhcCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 283 LVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 283 ~l~~~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
.+++.+ -+..|+|.++|||..... | +..++.....|....+. .++....+++.|+|+++..++....
T Consensus 134 ~v~~~~--~~~~I~Rtswv~g~~g~n-------F--v~tml~la~~~~~l~vv--~Dq~gsPt~~~dlA~~i~~ll~~~~ 200 (281)
T COG1091 134 AVRAAG--PRHLILRTSWVYGEYGNN-------F--VKTMLRLAKEGKELKVV--DDQYGSPTYTEDLADAILELLEKEK 200 (281)
T ss_pred HHHHhC--CCEEEEEeeeeecCCCCC-------H--HHHHHHHhhcCCceEEE--CCeeeCCccHHHHHHHHHHHHhccc
Confidence 999985 688999999999986521 1 13455566667666655 4678889999999999999887664
Q ss_pred h
Q psy17528 363 F 363 (366)
Q Consensus 363 ~ 363 (366)
.
T Consensus 201 ~ 201 (281)
T COG1091 201 E 201 (281)
T ss_pred c
Confidence 3
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.9e-20 Score=176.31 Aligned_cols=206 Identities=14% Similarity=0.117 Sum_probs=137.0
Q ss_pred EEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccccc
Q psy17528 51 IFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNYFN 130 (366)
Q Consensus 51 ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (366)
|||||||||||+++++.|++.| ++|++++|+......
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~---------------------------------------- 37 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDG---HEVTILTRSPPAGAN---------------------------------------- 37 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcC---CEEEEEeCCCCCCCc----------------------------------------
Confidence 6999999999999999999998 899999998653210
Q ss_pred hhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh----h-hhHHHHHHHHHHHHHHHH
Q psy17528 131 DAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF----D-EHIRTAYNINVKGTQTIL 205 (366)
Q Consensus 131 ~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~----~-~~~~~~~~~nv~~~~~ll 205 (366)
. .... ..+... . .....+.++|+|||+|+.... . .....+++.|+.++.+++
T Consensus 38 ----------~----~~~~--~~~~~~-~------~~~~~~~~~D~Vvh~a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~ 94 (292)
T TIGR01777 38 ----------T----KWEG--YKPWAP-L------AESEALEGADAVINLAGEPIADKRWTEERKQEIRDSRIDTTRALV 94 (292)
T ss_pred ----------c----ccee--eecccc-c------chhhhcCCCCEEEECCCCCcccccCCHHHHHHHHhcccHHHHHHH
Confidence 0 0000 011111 1 234556789999999996432 1 234567889999999999
Q ss_pred HHHHhcCCC--cEEEEeeCcceecCc--cccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHH
Q psy17528 206 ALAKRMKGL--KSFVHVSTAYCNCDR--KFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAE 281 (366)
Q Consensus 206 ~~a~~~~~~--~~~v~iSS~~~~~~~--~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E 281 (366)
+++.+. ++ ..|++.||.++|+.. .++.|+..+.+. +.|+..+...|
T Consensus 95 ~a~~~~-~~~~~~~i~~S~~~~yg~~~~~~~~E~~~~~~~-----------------------------~~~~~~~~~~e 144 (292)
T TIGR01777 95 EAIAAA-EQKPKVFISASAVGYYGTSEDRVFTEEDSPAGD-----------------------------DFLAELCRDWE 144 (292)
T ss_pred HHHHhc-CCCceEEEEeeeEEEeCCCCCCCcCcccCCCCC-----------------------------ChHHHHHHHHH
Confidence 999987 44 356667776777642 234444322111 34566666777
Q ss_pred HHHHHhc-CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHh
Q psy17528 282 DLVRQVG-HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWY 360 (366)
Q Consensus 282 ~~l~~~~-~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~ 360 (366)
+.+.... .+++++++||+.|||+... +. .....++ ....+. ..++++..++|+|++|+|+++..++++
T Consensus 145 ~~~~~~~~~~~~~~ilR~~~v~G~~~~----~~---~~~~~~~-~~~~~~---~~g~~~~~~~~i~v~Dva~~i~~~l~~ 213 (292)
T TIGR01777 145 EAAQAAEDLGTRVVLLRTGIVLGPKGG----AL---AKMLPPF-RLGLGG---PLGSGRQWFSWIHIEDLVQLILFALEN 213 (292)
T ss_pred HHhhhchhcCCceEEEeeeeEECCCcc----hh---HHHHHHH-hcCccc---ccCCCCcccccEeHHHHHHHHHHHhcC
Confidence 7766544 5899999999999998642 11 1111111 111221 245778899999999999999999987
Q ss_pred hhh
Q psy17528 361 FLF 363 (366)
Q Consensus 361 ~~~ 363 (366)
+..
T Consensus 214 ~~~ 216 (292)
T TIGR01777 214 ASI 216 (292)
T ss_pred ccc
Confidence 543
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-20 Score=185.91 Aligned_cols=207 Identities=13% Similarity=0.136 Sum_probs=146.0
Q ss_pred CCeEEEe----CCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 48 DQTIFIT----GATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 48 ~~~ilIt----GatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
+++|||| |||||||++|+++|++.| ++|++++|+..... .+.. . -+..+.
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G---~~V~~l~R~~~~~~---~~~~---~-~~~~~~---------------- 105 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAG---HEVTLFTRGKEPSQ---KMKK---E-PFSRFS---------------- 105 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCC---CEEEEEecCCcchh---hhcc---C-chhhhh----------------
Confidence 4789999 999999999999999998 89999999864311 0000 0 000000
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHH
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQT 203 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ 203 (366)
......+.++.+|+.+.. .+. ...++|+|||+++. +..++..
T Consensus 106 ------------------~l~~~~v~~v~~D~~d~~------~~~-~~~~~d~Vi~~~~~-------------~~~~~~~ 147 (378)
T PLN00016 106 ------------------ELSSAGVKTVWGDPADVK------SKV-AGAGFDVVYDNNGK-------------DLDEVEP 147 (378)
T ss_pred ------------------HhhhcCceEEEecHHHHH------hhh-ccCCccEEEeCCCC-------------CHHHHHH
Confidence 001135788999998622 121 12479999999763 2345778
Q ss_pred HHHHHHhcCCCcEEEEeeCcceecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHH
Q psy17528 204 ILALAKRMKGLKSFVHVSTAYCNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAE 281 (366)
Q Consensus 204 ll~~a~~~~~~~~~v~iSS~~~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E 281 (366)
+++++++. ++++|||+||.++|+... +..|.... .++. +|..+|
T Consensus 148 ll~aa~~~-gvkr~V~~SS~~vyg~~~~~p~~E~~~~--------------------------------~p~~-sK~~~E 193 (378)
T PLN00016 148 VADWAKSP-GLKQFLFCSSAGVYKKSDEPPHVEGDAV--------------------------------KPKA-GHLEVE 193 (378)
T ss_pred HHHHHHHc-CCCEEEEEccHhhcCCCCCCCCCCCCcC--------------------------------CCcc-hHHHHH
Confidence 99999886 899999999999887532 22222111 1122 799999
Q ss_pred HHHHHhcCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhh
Q psy17528 282 DLVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 282 ~~l~~~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
+++++. +++++++||+++||++.... ....++.....+.+..+++++...++|+|++|+|++++.+++++
T Consensus 194 ~~l~~~--~l~~~ilRp~~vyG~~~~~~--------~~~~~~~~~~~~~~i~~~g~g~~~~~~i~v~Dva~ai~~~l~~~ 263 (378)
T PLN00016 194 AYLQKL--GVNWTSFRPQYIYGPGNNKD--------CEEWFFDRLVRGRPVPIPGSGIQLTQLGHVKDLASMFALVVGNP 263 (378)
T ss_pred HHHHHc--CCCeEEEeceeEECCCCCCc--------hHHHHHHHHHcCCceeecCCCCeeeceecHHHHHHHHHHHhcCc
Confidence 998764 79999999999999975421 11334556667777777778888999999999999999999875
Q ss_pred h
Q psy17528 362 L 362 (366)
Q Consensus 362 ~ 362 (366)
.
T Consensus 264 ~ 264 (378)
T PLN00016 264 K 264 (378)
T ss_pred c
Confidence 4
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-19 Score=160.77 Aligned_cols=183 Identities=21% Similarity=0.300 Sum_probs=141.2
Q ss_pred EEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccccc
Q psy17528 51 IFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNYFN 130 (366)
Q Consensus 51 ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (366)
|+|+||||++|+.++++|+++| ++|++++|++++..
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~---~~V~~~~R~~~~~~----------------------------------------- 36 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG---HEVTALVRSPSKAE----------------------------------------- 36 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---SEEEEEESSGGGHH-----------------------------------------
T ss_pred eEEECCCChHHHHHHHHHHHCC---CEEEEEecCchhcc-----------------------------------------
Confidence 7999999999999999999998 99999999865311
Q ss_pred hhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHHHHHHh
Q psy17528 131 DAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALAKR 210 (366)
Q Consensus 131 ~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll~~a~~ 210 (366)
. ..+++++.+|+.|.+ .+.+++.++|+||++++.... +...++.+++++++
T Consensus 37 ----------~---~~~~~~~~~d~~d~~------~~~~al~~~d~vi~~~~~~~~----------~~~~~~~~~~a~~~ 87 (183)
T PF13460_consen 37 ----------D---SPGVEIIQGDLFDPD------SVKAALKGADAVIHAAGPPPK----------DVDAAKNIIEAAKK 87 (183)
T ss_dssp ----------H---CTTEEEEESCTTCHH------HHHHHHTTSSEEEECCHSTTT----------HHHHHHHHHHHHHH
T ss_pred ----------c---ccccccceeeehhhh------hhhhhhhhcchhhhhhhhhcc----------cccccccccccccc
Confidence 0 368999999999987 899999999999999986432 16677889999998
Q ss_pred cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHHhcCC
Q psy17528 211 MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVGHE 290 (366)
Q Consensus 211 ~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~~g 290 (366)
. ++++++++|+.+++......... ... .....|...|...|+++++. +
T Consensus 88 ~-~~~~~v~~s~~~~~~~~~~~~~~-~~~----------------------------~~~~~~~~~~~~~e~~~~~~--~ 135 (183)
T PF13460_consen 88 A-GVKRVVYLSSAGVYRDPPGLFSD-EDK----------------------------PIFPEYARDKREAEEALRES--G 135 (183)
T ss_dssp T-TSSEEEEEEETTGTTTCTSEEEG-GTC----------------------------GGGHHHHHHHHHHHHHHHHS--T
T ss_pred c-ccccceeeeccccCCCCCccccc-ccc----------------------------cchhhhHHHHHHHHHHHHhc--C
Confidence 7 89999999999888643321000 000 00156889999999999754 8
Q ss_pred CCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHh
Q psy17528 291 LPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWY 360 (366)
Q Consensus 291 l~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~ 360 (366)
++++++||+.+||+..... .+ ....+.....+|+++|+|++++.++++
T Consensus 136 ~~~~ivrp~~~~~~~~~~~-~~---------------------~~~~~~~~~~~i~~~DvA~~~~~~l~~ 183 (183)
T PF13460_consen 136 LNWTIVRPGWIYGNPSRSY-RL---------------------IKEGGPQGVNFISREDVAKAIVEALEN 183 (183)
T ss_dssp SEEEEEEESEEEBTTSSSE-EE---------------------ESSTSTTSHCEEEHHHHHHHHHHHHH-
T ss_pred CCEEEEECcEeEeCCCcce-eE---------------------EeccCCCCcCcCCHHHHHHHHHHHhCC
Confidence 9999999999999864311 11 111345566999999999999998874
|
... |
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.9e-19 Score=169.34 Aligned_cols=141 Identities=18% Similarity=0.139 Sum_probs=98.1
Q ss_pred CcCEEEEcCcccC------hhhhHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCcceecCcc--------ccccccCC
Q psy17528 173 QTTIIFHIAATVR------FDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTAYCNCDRK--------FIAEKFYP 238 (366)
Q Consensus 173 ~~d~Vih~a~~~~------~~~~~~~~~~~nv~~~~~ll~~a~~~~~~~~~v~iSS~~~~~~~~--------~~~e~~~~ 238 (366)
++|+|||+||... ...++.+.+++|+.++.+++++|++. +++ ++++||.++|+... ++.|+..+
T Consensus 57 ~~D~ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~-gv~-~v~~sS~~vy~~~~~~p~~~~~~~~Ee~~p 134 (298)
T PLN02778 57 KPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRER-GLV-LTNYATGCIFEYDDAHPLGSGIGFKEEDTP 134 (298)
T ss_pred CCCEEEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCC-EEEEecceEeCCCCCCCcccCCCCCcCCCC
Confidence 6899999999753 22456788999999999999999987 665 56667766664321 12322211
Q ss_pred CCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHHhcCCCCEEEEecCccccCCCCCCCccccccch
Q psy17528 239 PVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNG 318 (366)
Q Consensus 239 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~ 318 (366)
. +..+.|+.+|+.+|+++..+. +..++|++.++|+....
T Consensus 135 ~----------------------------~~~s~Yg~sK~~~E~~~~~y~---~~~~lr~~~~~~~~~~~---------- 173 (298)
T PLN02778 135 N----------------------------FTGSFYSKTKAMVEELLKNYE---NVCTLRVRMPISSDLSN---------- 173 (298)
T ss_pred C----------------------------CCCCchHHHHHHHHHHHHHhh---ccEEeeecccCCccccc----------
Confidence 1 112789999999999998875 46789998878764211
Q ss_pred HHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhh
Q psy17528 319 VMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 319 ~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
...++..+..+......+ .+|+|++|+++|++.++...
T Consensus 174 ~~~fi~~~~~~~~~~~~~-----~s~~yv~D~v~al~~~l~~~ 211 (298)
T PLN02778 174 PRNFITKITRYEKVVNIP-----NSMTILDELLPISIEMAKRN 211 (298)
T ss_pred HHHHHHHHHcCCCeeEcC-----CCCEEHHHHHHHHHHHHhCC
Confidence 122556666665443331 37999999999999988643
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-18 Score=187.08 Aligned_cols=174 Identities=19% Similarity=0.252 Sum_probs=134.6
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
|+|+|||||||||++++++|++.| ++|++++|+....
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G---~~Vv~l~R~~~~~---------------------------------------- 37 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQG---HEVVGIARHRPDS---------------------------------------- 37 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc---CEEEEEECCchhh----------------------------------------
Confidence 479999999999999999999998 7899999863210
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALA 208 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll~~a 208 (366)
...++.++.+|+.+.+ .+..+++++|+|||+|+.... ..++|+.++.++++++
T Consensus 38 ---------------~~~~v~~v~gDL~D~~------~l~~al~~vD~VVHlAa~~~~------~~~vNv~GT~nLLeAa 90 (854)
T PRK05865 38 ---------------WPSSADFIAADIRDAT------AVESAMTGADVVAHCAWVRGR------NDHINIDGTANVLKAM 90 (854)
T ss_pred ---------------cccCceEEEeeCCCHH------HHHHHHhCCCEEEECCCcccc------hHHHHHHHHHHHHHHH
Confidence 0135778999999987 788888999999999986431 4678999999999999
Q ss_pred HhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHHhc
Q psy17528 209 KRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVG 288 (366)
Q Consensus 209 ~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~ 288 (366)
.+. ++++||++||. . |..+|+++.++
T Consensus 91 ~~~-gvkr~V~iSS~-----------------------------------------------~-----K~aaE~ll~~~- 116 (854)
T PRK05865 91 AET-GTGRIVFTSSG-----------------------------------------------H-----QPRVEQMLADC- 116 (854)
T ss_pred HHc-CCCeEEEECCc-----------------------------------------------H-----HHHHHHHHHHc-
Confidence 986 78899999982 1 77888888654
Q ss_pred CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhh
Q psy17528 289 HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 289 ~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
+++++++||++||||+.. .++..... ......+.+...++|+|++|+|++++.+++.+
T Consensus 117 -gl~~vILRp~~VYGP~~~-------------~~i~~ll~-~~v~~~G~~~~~~dfIhVdDVA~Ai~~aL~~~ 174 (854)
T PRK05865 117 -GLEWVAVRCALIFGRNVD-------------NWVQRLFA-LPVLPAGYADRVVQVVHSDDAQRLLVRALLDT 174 (854)
T ss_pred -CCCEEEEEeceEeCCChH-------------HHHHHHhc-CceeccCCCCceEeeeeHHHHHHHHHHHHhCC
Confidence 799999999999998621 11222221 11122234456679999999999999988654
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4e-18 Score=159.40 Aligned_cols=214 Identities=16% Similarity=0.118 Sum_probs=143.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
++++++|||||+|+||++++++|++.| ++|+++.|++.. .+++.+.+. .
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G---~~v~~~~r~~~~---~~~~~~~~~--------~----------------- 53 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAG---AAVAIADLNQDG---ANAVADEIN--------K----------------- 53 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC---CeEEEEeCChHH---HHHHHHHHH--------h-----------------
Confidence 568999999999999999999999998 788899997532 111111111 0
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~ 191 (366)
...++.++.+|+.+.+ .+.+++. ++|+||||||.... ...++
T Consensus 54 ------------------~~~~~~~~~~Dl~~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~ 109 (262)
T PRK13394 54 ------------------AGGKAIGVAMDVTNED------AVNAGIDKVAERFGSVDILVSNAGIQIVNPIENYSFADWK 109 (262)
T ss_pred ------------------cCceEEEEECCCCCHH------HHHHHHHHHHHHcCCCCEEEECCccCCCCchhhCCHHHHH
Confidence 1245778999999976 5555543 48999999997532 23456
Q ss_pred HHHHHHHHH----HHHHHHHH-HhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 192 TAYNINVKG----TQTILALA-KRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 192 ~~~~~nv~~----~~~ll~~a-~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
..+++|+.+ +..+++.+ +.. +.++||++||.+..... +
T Consensus 110 ~~~~~n~~~~~~~~~~~l~~~~~~~-~~~~iv~~ss~~~~~~~----------~-------------------------- 152 (262)
T PRK13394 110 KMQAIHVDGAFLTTKAALKHMYKDD-RGGVVIYMGSVHSHEAS----------P-------------------------- 152 (262)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhhc-CCcEEEEEcchhhcCCC----------C--------------------------
Confidence 778899999 55566666 443 67899999997543111 0
Q ss_pred CCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCC-Cccccccc-hHHHHHHHHhcCcceeecCCCC
Q psy17528 267 GGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPM-PLWIKGFN-GVMALALGAGTGLIRVVQTDPN 339 (366)
Q Consensus 267 ~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~-~~~~~~~~-~~~~~~~~~~~g~~~~l~~~~~ 339 (366)
....|+.+|...+.+++.+. .++.++++||+.++++..... +....... ........ ++..+.
T Consensus 153 --~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 222 (262)
T PRK13394 153 --LKSAYVTAKHGLLGLARVLAKEGAKHNVRSHVVCPGFVRTPLVDKQIPEQAKELGISEEEVVKK--------VMLGKT 222 (262)
T ss_pred --CCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccchhhhhhhHhhhhccCCChHHHHHH--------HHhcCC
Confidence 01679999999988887665 589999999999998753210 00000000 00111111 122334
Q ss_pred cccCcccHHHHHHHHHHHHHhh
Q psy17528 340 ISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 340 ~~~~~v~vdDva~ai~~~~~~~ 361 (366)
..++|++++|++++++.++...
T Consensus 223 ~~~~~~~~~dva~a~~~l~~~~ 244 (262)
T PRK13394 223 VDGVFTTVEDVAQTVLFLSSFP 244 (262)
T ss_pred CCCCCCCHHHHHHHHHHHcCcc
Confidence 5678999999999999988754
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-17 Score=156.37 Aligned_cols=208 Identities=18% Similarity=0.209 Sum_probs=139.7
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
.++++|+||||+|+||++++++|++.| ++|++++|+.+.. ...
T Consensus 15 ~~~~~ilItGasG~iG~~l~~~L~~~g---~~V~~~~R~~~~~------~~~---------------------------- 57 (251)
T PLN00141 15 VKTKTVFVAGATGRTGKRIVEQLLAKG---FAVKAGVRDVDKA------KTS---------------------------- 57 (251)
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhCC---CEEEEEecCHHHH------HHh----------------------------
Confidence 346899999999999999999999998 8899999975321 000
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH-hCcCEEEEcCcccChhhhHHHHHHHHHHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI-SQTTIIFHIAATVRFDEHIRTAYNINVKGTQTI 204 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~-~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~l 204 (366)
.. ...++.++.+|+.+.. ..+.+.+ .++|+||++++..... .....++.|..++.++
T Consensus 58 ---------------~~-~~~~~~~~~~Dl~d~~-----~~l~~~~~~~~d~vi~~~g~~~~~-~~~~~~~~n~~~~~~l 115 (251)
T PLN00141 58 ---------------LP-QDPSLQIVRADVTEGS-----DKLVEAIGDDSDAVICATGFRRSF-DPFAPWKVDNFGTVNL 115 (251)
T ss_pred ---------------cc-cCCceEEEEeeCCCCH-----HHHHHHhhcCCCEEEECCCCCcCC-CCCCceeeehHHHHHH
Confidence 00 1236889999998742 1566666 5899999998863211 1122346788899999
Q ss_pred HHHHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHH
Q psy17528 205 LALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLV 284 (366)
Q Consensus 205 l~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l 284 (366)
++++.+. ++++||++||..+++...... ...+.... . ....|...|..+|+++
T Consensus 116 l~a~~~~-~~~~iV~iSS~~v~g~~~~~~---~~~~~~~~-----------------~------~~~~~~~~k~~~e~~l 168 (251)
T PLN00141 116 VEACRKA-GVTRFILVSSILVNGAAMGQI---LNPAYIFL-----------------N------LFGLTLVAKLQAEKYI 168 (251)
T ss_pred HHHHHHc-CCCEEEEEccccccCCCcccc---cCcchhHH-----------------H------HHHHHHHHHHHHHHHH
Confidence 9999876 788999999998876432110 00000000 0 0023556789999888
Q ss_pred HHhcCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhhhh
Q psy17528 285 RQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYFLF 363 (366)
Q Consensus 285 ~~~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~~ 363 (366)
++. +++++++||+.+++.... +.. .+.........+++.+|+|++++.++..+..
T Consensus 169 ~~~--gi~~~iirpg~~~~~~~~---------------------~~~-~~~~~~~~~~~~i~~~dvA~~~~~~~~~~~~ 223 (251)
T PLN00141 169 RKS--GINYTIVRPGGLTNDPPT---------------------GNI-VMEPEDTLYEGSISRDQVAEVAVEALLCPES 223 (251)
T ss_pred Hhc--CCcEEEEECCCccCCCCC---------------------ceE-EECCCCccccCcccHHHHHHHHHHHhcChhh
Confidence 764 799999999999975321 000 0111111223579999999999999887654
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.3e-17 Score=152.59 Aligned_cols=214 Identities=14% Similarity=0.102 Sum_probs=141.7
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++|+||||+|+||++++++|++.| ++|++++|+.... +++.+. +.
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g---~~v~~~~r~~~~~---~~~~~~--------~~------------------ 49 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEG---AKVVIADLNDEAA---AAAAEA--------LQ------------------ 49 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CeEEEEeCCHHHH---HHHHHH--------HH------------------
Confidence 457899999999999999999999998 7899999975421 111111 10
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~ 191 (366)
....++.++.+|+.+.+ .+..+++ ++|+|||+|+.... ....+
T Consensus 50 -----------------~~~~~~~~~~~Dl~~~~------~~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~ 106 (258)
T PRK12429 50 -----------------KAGGKAIGVAMDVTDEE------AINAGIDYAVETFGGVDILVNNAGIQHVAPIEDFPTEKWK 106 (258)
T ss_pred -----------------hcCCcEEEEEcCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHH
Confidence 01256888999999877 5655554 58999999996432 23345
Q ss_pred HHHHHHHHHHHHHHH----HHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 192 TAYNINVKGTQTILA----LAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~----~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
..++.|+.++..+++ .+.+. +.++||++||...+....
T Consensus 107 ~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~iss~~~~~~~~------------------------------------- 148 (258)
T PRK12429 107 KMIAIMLDGAFLTTKAALPIMKAQ-GGGRIINMASVHGLVGSA------------------------------------- 148 (258)
T ss_pred HHHhhcchhhHHHHHHHHHHHHhc-CCeEEEEEcchhhccCCC-------------------------------------
Confidence 677889988555544 44443 678999999986542211
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCC-Cccccccc-hHHHHHHHHhcCcceeecCCCCc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPM-PLWIKGFN-GVMALALGAGTGLIRVVQTDPNI 340 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~-~~~~~~~~-~~~~~~~~~~~g~~~~l~~~~~~ 340 (366)
....|+.+|...+.+.+.+. .++.++++||+.++++..... ........ ........ .+.....
T Consensus 149 -~~~~y~~~k~a~~~~~~~l~~~~~~~~i~v~~~~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 219 (258)
T PRK12429 149 -GKAAYVSAKHGLIGLTKVVALEGATHGVTVNAICPGYVDTPLVRKQIPDLAKERGISEEEVLED--------VLLPLVP 219 (258)
T ss_pred -CcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCcchhhhhhhhhhccccCCChHHHHHH--------HHhccCC
Confidence 01679999998888776553 579999999999998754211 00000000 00001111 1112233
Q ss_pred ccCcccHHHHHHHHHHHHHhh
Q psy17528 341 SMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 341 ~~~~v~vdDva~ai~~~~~~~ 361 (366)
.+.+++++|+|++++.++...
T Consensus 220 ~~~~~~~~d~a~~~~~l~~~~ 240 (258)
T PRK12429 220 QKRFTTVEEIADYALFLASFA 240 (258)
T ss_pred ccccCCHHHHHHHHHHHcCcc
Confidence 467999999999999888654
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.9e-17 Score=153.02 Aligned_cols=208 Identities=18% Similarity=0.182 Sum_probs=138.7
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
.++||||||+|+||++++++|++.| ++|+++.|+... .+.+.+ .
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~g---~~v~~~~r~~~~---~~~~~~------------~------------------ 45 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLARG---DRVAATVRRPDA---LDDLKA------------R------------------ 45 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHH------------h------------------
Confidence 3689999999999999999999998 789999987421 111111 0
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIRTA 193 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~~~ 193 (366)
...++.++.+|+++.+ .+..++. ++|+|||+||.... ...++..
T Consensus 46 ----------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~ 103 (276)
T PRK06482 46 ----------------YGDRLWVLQLDVTDSA------AVRAVVDRAFAALGRIDVVVSNAGYGLFGAAEELSDAQIRRQ 103 (276)
T ss_pred ----------------ccCceEEEEccCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCcccccCCHHHHHHH
Confidence 1246788999999976 5555443 57999999997532 2345678
Q ss_pred HHHHHHHHHHHHHHHHh---cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCC
Q psy17528 194 YNINVKGTQTILALAKR---MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKP 270 (366)
Q Consensus 194 ~~~nv~~~~~ll~~a~~---~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (366)
+++|+.++..+++++.+ ..+.++||++||....... | ..
T Consensus 104 ~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~----------~----------------------------~~ 145 (276)
T PRK06482 104 IDTNLIGSIQVIRAALPHLRRQGGGRIVQVSSEGGQIAY----------P----------------------------GF 145 (276)
T ss_pred HHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCcccccCC----------C----------------------------CC
Confidence 88999999999998632 1256799999996543111 0 01
Q ss_pred chHHHHHHHHHHHHHHhc-----CCCCEEEEecCcc---ccCCCCCCCccccccch-HHHHHHHHhcCcceeecCCCCcc
Q psy17528 271 NSYTLTKATAEDLVRQVG-----HELPICVLRPSIV---FPTLQEPMPLWIKGFNG-VMALALGAGTGLIRVVQTDPNIS 341 (366)
Q Consensus 271 ~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v---~G~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~l~~~~~~~ 341 (366)
+.|+.+|+..|.+++.+. .+++++++||+.+ ||++.... ........ ....+....... . .
T Consensus 146 ~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~v~pg~~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--------~-~ 215 (276)
T PRK06482 146 SLYHATKWGIEGFVEAVAQEVAPFGIEFTIVEPGPARTNFGAGLDRG-APLDAYDDTPVGDLRRALADG--------S-F 215 (276)
T ss_pred chhHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCccccCCccccccc-CCCccccchhhHHHHHHHhhc--------c-C
Confidence 689999999998887665 5899999999998 55433211 11110110 111122222211 1 1
Q ss_pred cCcccHHHHHHHHHHHHHhh
Q psy17528 342 MDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 342 ~~~v~vdDva~ai~~~~~~~ 361 (366)
.-+.+++|++++++.++..+
T Consensus 216 ~~~~d~~~~~~a~~~~~~~~ 235 (276)
T PRK06482 216 AIPGDPQKMVQAMIASADQT 235 (276)
T ss_pred CCCCCHHHHHHHHHHHHcCC
Confidence 12467899999999988654
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.6e-17 Score=150.84 Aligned_cols=212 Identities=15% Similarity=0.111 Sum_probs=141.1
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
++++|||||+|+||++++++|++.| ++|++++|+... .+++.+.+.
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g---~~v~~~~r~~~~---~~~~~~~~~---------------------------- 46 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAG---ANVVVNDLGEAG---AEAAAKVAT---------------------------- 46 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHHHH----------------------------
Confidence 4689999999999999999999998 789999997431 122222111
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH-------hCcCEEEEcCcccCh-------hhhHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI-------SQTTIIFHIAATVRF-------DEHIRTA 193 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~-------~~~d~Vih~a~~~~~-------~~~~~~~ 193 (366)
....++.++.+|+.+.+ .+..++ .++|+|||+++.... ...++..
T Consensus 47 ---------------~~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~ 105 (255)
T TIGR01963 47 ---------------DAGGSVIYLVADVTKED------EIADMIAAAAAEFGGLDILVNNAGIQHVAPIEEFPPEDWDRI 105 (255)
T ss_pred ---------------hcCCceEEEECCCCCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHH
Confidence 01246888999999876 444433 357999999997432 2345667
Q ss_pred HHHHHHHHHHHHHHH----HhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCC
Q psy17528 194 YNINVKGTQTILALA----KRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGK 269 (366)
Q Consensus 194 ~~~nv~~~~~ll~~a----~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (366)
++.|+.++..+++.+ ++. +.+++|++||...+.... .
T Consensus 106 ~~~n~~g~~~~~~~~~~~~~~~-~~~~~v~~ss~~~~~~~~--------------------------------------~ 146 (255)
T TIGR01963 106 IAIMLTSAFHTIRAALPHMKKQ-GWGRIINIASAHGLVASP--------------------------------------F 146 (255)
T ss_pred HHHHhHHHHHHHHHHHHHHHhc-CCeEEEEEcchhhcCCCC--------------------------------------C
Confidence 888999988887766 333 667999999975542210 0
Q ss_pred CchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCC-Cccccccc-hHHHHHHHHhcCcceeecCCCCccc
Q psy17528 270 PNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPM-PLWIKGFN-GVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 270 ~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~-~~~~~~~~-~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
...|+.+|...+.+++.+. .+++++++||+.++++..... ........ .....+.. ....+...+
T Consensus 147 ~~~y~~sk~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 218 (255)
T TIGR01963 147 KSAYVAAKHGLIGLTKVLALEVAAHGITVNAICPGYVRTPLVEKQIADQAKTRGIPEEQVIRE--------VMLPGQPTK 218 (255)
T ss_pred CchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHHHHHHhhhcccCCCchHHHHH--------HHHccCccc
Confidence 1679999998888886554 489999999999998742100 00000000 00000000 011234567
Q ss_pred CcccHHHHHHHHHHHHHhh
Q psy17528 343 DVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~ 361 (366)
++++++|+|++++.++..+
T Consensus 219 ~~~~~~d~a~~~~~~~~~~ 237 (255)
T TIGR01963 219 RFVTVDEVAETALFLASDA 237 (255)
T ss_pred cCcCHHHHHHHHHHHcCcc
Confidence 8999999999999998764
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-16 Score=146.49 Aligned_cols=206 Identities=14% Similarity=0.090 Sum_probs=144.2
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++|+||||+|++|.+++++|+++| ++|++++|+.... +...+ .+..
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g---~~V~~~~r~~~~~---~~~~~--------~l~~----------------- 52 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADG---AEVIVVDICGDDA---AATAE--------LVEA----------------- 52 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCC---CEEEEEeCCHHHH---HHHHH--------HHHh-----------------
Confidence 457899999999999999999999998 7899999975321 11111 1111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~ 191 (366)
...++.++.+|+.+.+ .+..++. .+|+|||+++.... ...+.
T Consensus 53 ------------------~~~~~~~~~~Dl~~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~ 108 (251)
T PRK12826 53 ------------------AGGKARARQVDVRDRA------ALKAAVAAGVEDFGRLDILVANAGIFPLTPFAEMDDEQWE 108 (251)
T ss_pred ------------------cCCeEEEEECCCCCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHH
Confidence 1245888999999876 6666654 68999999987542 23456
Q ss_pred HHHHHHHHHHHHHHHHHHh---cCCCcEEEEeeCccee-cCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 192 TAYNINVKGTQTILALAKR---MKGLKSFVHVSTAYCN-CDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~---~~~~~~~v~iSS~~~~-~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
..++.|+.++..+++.+.+ ..+.++|+++||..++ ...
T Consensus 109 ~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~ss~~~~~~~~-------------------------------------- 150 (251)
T PRK12826 109 RVIDVNLTGTFLLTQAALPALIRAGGGRIVLTSSVAGPRVGY-------------------------------------- 150 (251)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechHhhccCC--------------------------------------
Confidence 7889999999999887642 1256789999998654 111
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
.....|+.+|...+.+++.+. .+++++++||+.++|+...+... ..+....... ....
T Consensus 151 ~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~--------~~~~~~~~~~---------~~~~ 213 (251)
T PRK12826 151 PGLAHYAASKAGLVGFTRALALELAARNITVNSVHPGGVDTPMAGNLGD--------AQWAEAIAAA---------IPLG 213 (251)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCCCCcchhhhcCc--------hHHHHHHHhc---------CCCC
Confidence 001579999999998887765 58999999999999986532211 0001111111 1122
Q ss_pred CcccHHHHHHHHHHHHHhh
Q psy17528 343 DVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~ 361 (366)
.+++++|+|++++.++...
T Consensus 214 ~~~~~~dva~~~~~l~~~~ 232 (251)
T PRK12826 214 RLGEPEDIAAAVLFLASDE 232 (251)
T ss_pred CCcCHHHHHHHHHHHhCcc
Confidence 5899999999999887654
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.6e-17 Score=147.87 Aligned_cols=206 Identities=14% Similarity=0.132 Sum_probs=143.4
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++||||||+|+||++++++|++.| ++|+++.|+... ..+.+.+..
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g---~~v~~~~~~~~~--~~~~~~~~~--------------------------- 51 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAG---ADVVVHYRSDEE--AAEELVEAV--------------------------- 51 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC---CeEEEEeCCCHH--HHHHHHHHH---------------------------
Confidence 557899999999999999999999998 677777776432 111111111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~ 191 (366)
.....++.++.+|+.+.+ .+..++. ++|+|||+||.... ...+.
T Consensus 52 ----------------~~~~~~~~~~~~D~~~~~------~v~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~ 109 (249)
T PRK12825 52 ----------------EALGRRAQAVQADVTDKA------ALEAAVAAAVERFGRIDILVNNAGIFEDKPLADMSDDEWD 109 (249)
T ss_pred ----------------HhcCCceEEEECCcCCHH------HHHHHHHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHH
Confidence 111356889999999876 5655553 57999999996422 23456
Q ss_pred HHHHHHHHHHHHHHHHHHh---cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKR---MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~---~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
..+++|+.+...+++.+.+ ..+.++||++||..++....
T Consensus 110 ~~~~~n~~~~~~l~~~~~~~~~~~~~~~~i~~SS~~~~~~~~-------------------------------------- 151 (249)
T PRK12825 110 EVIDVNLSGVFHLLRAVVPPMRKQRGGRIVNISSVAGLPGWP-------------------------------------- 151 (249)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECccccCCCCC--------------------------------------
Confidence 7889999999998887632 22678999999987653211
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
....|+.+|...+.+++.+. .+++++++||+.++|+...+... ...... . . ......
T Consensus 152 ~~~~y~~sK~~~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~--------~~~~~~----~--~----~~~~~~ 213 (249)
T PRK12825 152 GRSNYAAAKAGLVGLTKALARELAEYGITVNMVAPGDIDTDMKEATIE--------EAREAK----D--A----ETPLGR 213 (249)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCccCCccccccc--------hhHHhh----h--c----cCCCCC
Confidence 01679999999998887654 58999999999999986532110 001110 0 0 112334
Q ss_pred cccHHHHHHHHHHHHHhh
Q psy17528 344 VVPGDRVINAMAALAWYF 361 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~~ 361 (366)
+++.+|+++++.+++...
T Consensus 214 ~~~~~dva~~~~~~~~~~ 231 (249)
T PRK12825 214 SGTPEDIARAVAFLCSDA 231 (249)
T ss_pred CcCHHHHHHHHHHHhCcc
Confidence 899999999999998664
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.5e-17 Score=151.60 Aligned_cols=206 Identities=16% Similarity=0.146 Sum_probs=138.2
Q ss_pred EEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccccc
Q psy17528 51 IFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNYFN 130 (366)
Q Consensus 51 ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (366)
|+|||||||||++|+..|.+.| +.|++++|+....+.
T Consensus 1 IliTGgTGlIG~~L~~~L~~~g---h~v~iltR~~~~~~~---------------------------------------- 37 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGG---HQVTILTRRPPKASQ---------------------------------------- 37 (297)
T ss_pred CeEeccccchhHHHHHHHHhCC---CeEEEEEcCCcchhh----------------------------------------
Confidence 6899999999999999999998 999999998754310
Q ss_pred hhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-CcCEEEEcCcccC----hhh-hHHHHHHHHHHHHHHH
Q psy17528 131 DAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-QTTIIFHIAATVR----FDE-HIRTAYNINVKGTQTI 204 (366)
Q Consensus 131 ~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-~~d~Vih~a~~~~----~~~-~~~~~~~~nv~~~~~l 204 (366)
.....+.. . + .+.+... ++|+|||+||..- ++. ..+...+..+..|..+
T Consensus 38 ------------~~~~~v~~--~-----~------~~~~~~~~~~DavINLAG~~I~~rrWt~~~K~~i~~SRi~~T~~L 92 (297)
T COG1090 38 ------------NLHPNVTL--W-----E------GLADALTLGIDAVINLAGEPIAERRWTEKQKEEIRQSRINTTEKL 92 (297)
T ss_pred ------------hcCccccc--c-----c------hhhhcccCCCCEEEECCCCccccccCCHHHHHHHHHHHhHHHHHH
Confidence 00111111 1 1 2333344 7999999999752 333 3466778889999999
Q ss_pred HHHHHhc-CCCcEEEEeeCcceecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHH
Q psy17528 205 LALAKRM-KGLKSFVHVSTAYCNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAE 281 (366)
Q Consensus 205 l~~a~~~-~~~~~~v~iSS~~~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E 281 (366)
.++.... .+++.|+--|..+-|+... .++|+..+.. .+-+..=..-|
T Consensus 93 ~e~I~~~~~~P~~~isaSAvGyYG~~~~~~~tE~~~~g~------------------------------~Fla~lc~~WE 142 (297)
T COG1090 93 VELIAASETKPKVLISASAVGYYGHSGDRVVTEESPPGD------------------------------DFLAQLCQDWE 142 (297)
T ss_pred HHHHHhccCCCcEEEecceEEEecCCCceeeecCCCCCC------------------------------ChHHHHHHHHH
Confidence 9987754 2445555555556665433 4555521110 22333334556
Q ss_pred HHHHHhc-CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHh
Q psy17528 282 DLVRQVG-HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWY 360 (366)
Q Consensus 282 ~~l~~~~-~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~ 360 (366)
+...+.. .|.+++.+|.|+|.|+.....+.+. ...+...|. -.++|+++++|||++|++++|..++++
T Consensus 143 ~~a~~a~~~gtRvvllRtGvVLs~~GGaL~~m~--------~~fk~glGG---~~GsGrQ~~SWIhieD~v~~I~fll~~ 211 (297)
T COG1090 143 EEALQAQQLGTRVVLLRTGVVLSPDGGALGKML--------PLFKLGLGG---KLGSGRQWFSWIHIEDLVNAILFLLEN 211 (297)
T ss_pred HHHhhhhhcCceEEEEEEEEEecCCCcchhhhc--------chhhhccCC---ccCCCCceeeeeeHHHHHHHHHHHHhC
Confidence 6666665 6899999999999998765433221 122222222 257899999999999999999999999
Q ss_pred hhhcC
Q psy17528 361 FLFSC 365 (366)
Q Consensus 361 ~~~~~ 365 (366)
..-+|
T Consensus 212 ~~lsG 216 (297)
T COG1090 212 EQLSG 216 (297)
T ss_pred cCCCC
Confidence 77665
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.9e-17 Score=170.81 Aligned_cols=177 Identities=20% Similarity=0.207 Sum_probs=126.2
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
|+||||||+||||++|+++|++.| ++|++++|....
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G---~~Vi~ldr~~~~----------------------------------------- 36 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAG---HTVSGIAQHPHD----------------------------------------- 36 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC---CEEEEEeCChhh-----------------------------------------
Confidence 479999999999999999999998 899999986321
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALA 208 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll~~a 208 (366)
. ....++++.+|+.+.. +.+++.++|+|||+|+..... ...+|+.++.+++++|
T Consensus 37 ------------~--~~~~ve~v~~Dl~d~~-------l~~al~~~D~VIHLAa~~~~~-----~~~vNv~Gt~nLleAA 90 (699)
T PRK12320 37 ------------A--LDPRVDYVCASLRNPV-------LQELAGEADAVIHLAPVDTSA-----PGGVGITGLAHVANAA 90 (699)
T ss_pred ------------c--ccCCceEEEccCCCHH-------HHHHhcCCCEEEEcCccCccc-----hhhHHHHHHHHHHHHH
Confidence 0 1146789999998753 567778999999999864211 2257999999999999
Q ss_pred HhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHHhc
Q psy17528 209 KRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVG 288 (366)
Q Consensus 209 ~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~ 288 (366)
++. ++ ++||+||.++ .. ..|. ..|.++...
T Consensus 91 ~~~-Gv-RiV~~SS~~G--~~-----------------------------------------~~~~----~aE~ll~~~- 120 (699)
T PRK12320 91 ARA-GA-RLLFVSQAAG--RP-----------------------------------------ELYR----QAETLVSTG- 120 (699)
T ss_pred HHc-CC-eEEEEECCCC--CC-----------------------------------------cccc----HHHHHHHhc-
Confidence 987 55 7999998742 11 1121 366666554
Q ss_pred CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhh
Q psy17528 289 HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 289 ~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
+++++++|++++||++..+.. ...+..++.....+++ ..+|||+|++++++.+++..
T Consensus 121 -~~p~~ILR~~nVYGp~~~~~~-----~r~I~~~l~~~~~~~p----------I~vIyVdDvv~alv~al~~~ 177 (699)
T PRK12320 121 -WAPSLVIRIAPPVGRQLDWMV-----CRTVATLLRSKVSARP----------IRVLHLDDLVRFLVLALNTD 177 (699)
T ss_pred -CCCEEEEeCceecCCCCcccH-----hHHHHHHHHHHHcCCc----------eEEEEHHHHHHHHHHHHhCC
Confidence 589999999999998653210 0112333333333332 23589999999999988753
|
|
| >KOG2865|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-17 Score=155.80 Aligned_cols=214 Identities=17% Similarity=0.172 Sum_probs=164.4
Q ss_pred cccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccc
Q psy17528 43 QEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGIT 122 (366)
Q Consensus 43 ~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (366)
...+++-.+-|+|||||+|..++.+|.+.| .+|++--|.+... ....
T Consensus 56 RsS~sGiVaTVFGAtGFlGryvvnklak~G---SQviiPyR~d~~~----------------~r~l-------------- 102 (391)
T KOG2865|consen 56 RSSVSGIVATVFGATGFLGRYVVNKLAKMG---SQVIIPYRGDEYD----------------PRHL-------------- 102 (391)
T ss_pred cccccceEEEEecccccccHHHHHHHhhcC---CeEEEeccCCccc----------------hhhe--------------
Confidence 455667889999999999999999999999 8999999975421 1111
Q ss_pred cccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHH
Q psy17528 123 HRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQ 202 (366)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~ 202 (366)
-......++-++.-|+.|++ .+...++...+|||+.|.--...++ .+.++|+.++.
T Consensus 103 -----------------kvmGdLGQvl~~~fd~~Ded------SIr~vvk~sNVVINLIGrd~eTknf-~f~Dvn~~~ae 158 (391)
T KOG2865|consen 103 -----------------KVMGDLGQVLFMKFDLRDED------SIRAVVKHSNVVINLIGRDYETKNF-SFEDVNVHIAE 158 (391)
T ss_pred -----------------eecccccceeeeccCCCCHH------HHHHHHHhCcEEEEeeccccccCCc-ccccccchHHH
Confidence 12223478899999999988 8999999999999999964333333 36788999999
Q ss_pred HHHHHHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHH
Q psy17528 203 TILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAED 282 (366)
Q Consensus 203 ~ll~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~ 282 (366)
.+.+.|+++ ++.+|||+|+....-. .++-|-.+|...|.
T Consensus 159 rlAricke~-GVerfIhvS~Lganv~----------------------------------------s~Sr~LrsK~~gE~ 197 (391)
T KOG2865|consen 159 RLARICKEA-GVERFIHVSCLGANVK----------------------------------------SPSRMLRSKAAGEE 197 (391)
T ss_pred HHHHHHHhh-Chhheeehhhcccccc----------------------------------------ChHHHHHhhhhhHH
Confidence 999999998 9999999999763311 12779999999999
Q ss_pred HHHHhcCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCC-CcccCcccHHHHHHHHHHHHHhh
Q psy17528 283 LVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDP-NISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 283 ~l~~~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~-~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
.+++.. -..+|+||+.|||..+.+..-| ..+.+. =...++++.| ......|||-|||.+|+.|+..|
T Consensus 198 aVrdaf--PeAtIirPa~iyG~eDrfln~y--------a~~~rk--~~~~pL~~~GekT~K~PVyV~DVaa~IvnAvkDp 265 (391)
T KOG2865|consen 198 AVRDAF--PEATIIRPADIYGTEDRFLNYY--------ASFWRK--FGFLPLIGKGEKTVKQPVYVVDVAAAIVNAVKDP 265 (391)
T ss_pred HHHhhC--CcceeechhhhcccchhHHHHH--------HHHHHh--cCceeeecCCcceeeccEEEehHHHHHHHhccCc
Confidence 999986 5689999999999987543221 122222 2334555554 46778999999999999999998
Q ss_pred hhcCC
Q psy17528 362 LFSCR 366 (366)
Q Consensus 362 ~~~~~ 366 (366)
...|+
T Consensus 266 ~s~Gk 270 (391)
T KOG2865|consen 266 DSMGK 270 (391)
T ss_pred cccCc
Confidence 77664
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.7e-17 Score=152.50 Aligned_cols=218 Identities=12% Similarity=0.088 Sum_probs=142.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
|+++++|||||+|+||++++++|++.| ++|++++|+.+.. +.+.+...
T Consensus 1 ~~~k~~lItGasg~iG~~la~~l~~~G---~~V~~~~r~~~~~---~~~~~~~~-------------------------- 48 (280)
T PRK06914 1 MNKKIAIVTGASSGFGLLTTLELAKKG---YLVIATMRNPEKQ---ENLLSQAT-------------------------- 48 (280)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHhCC---CEEEEEeCCHHHH---HHHHHHHH--------------------------
Confidence 457899999999999999999999998 8899999875321 11111100
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHH---H---HhCcCEEEEcCcccCh-------hhhHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEEL---L---ISQTTIIFHIAATVRF-------DEHIRT 192 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~---~---~~~~d~Vih~a~~~~~-------~~~~~~ 192 (366)
......++.++.+|+.+++ .+.. + +..+|+|||+||.... ...+..
T Consensus 49 ---------------~~~~~~~~~~~~~D~~d~~------~~~~~~~~~~~~~~id~vv~~ag~~~~~~~~~~~~~~~~~ 107 (280)
T PRK06914 49 ---------------QLNLQQNIKVQQLDVTDQN------SIHNFQLVLKEIGRIDLLVNNAGYANGGFVEEIPVEEYRK 107 (280)
T ss_pred ---------------hcCCCCceeEEecCCCCHH------HHHHHHHHHHhcCCeeEEEECCcccccCccccCCHHHHHH
Confidence 0011246889999999976 4443 2 1357999999996431 234566
Q ss_pred HHHHHHHHHHHHHHHH----HhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 193 AYNINVKGTQTILALA----KRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 193 ~~~~nv~~~~~ll~~a----~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
.++.|+.++..+++.+ ++. +..++|++||..+.....
T Consensus 108 ~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~vsS~~~~~~~~-------------------------------------- 148 (280)
T PRK06914 108 QFETNVFGAISVTQAVLPYMRKQ-KSGKIINISSISGRVGFP-------------------------------------- 148 (280)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhc-CCCEEEEECcccccCCCC--------------------------------------
Confidence 7889999988888775 333 567899999975432110
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCcccc---cc-chHHHHHHHHhcCcceeecCCCC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIK---GF-NGVMALALGAGTGLIRVVQTDPN 339 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~---~~-~~~~~~~~~~~~g~~~~l~~~~~ 339 (366)
....|+.+|...+.+++.+. ++++++++|||.++++.......... .. ......+..... . . ..
T Consensus 149 ~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~---~~ 221 (280)
T PRK06914 149 GLSPYVSSKYALEGFSESLRLELKPFGIDVALIEPGSYNTNIWEVGKQLAENQSETTSPYKEYMKKIQK-H---I---NS 221 (280)
T ss_pred CCchhHHhHHHHHHHHHHHHHHhhhhCCEEEEEecCCcccchhhccccccccccccccchHHHHHHHHH-H---H---hh
Confidence 01679999999999887764 68999999999999874321110000 00 000111111110 0 0 11
Q ss_pred cccCcccHHHHHHHHHHHHHhhh
Q psy17528 340 ISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 340 ~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
....+++++|+|++++.++.++.
T Consensus 222 ~~~~~~~~~dva~~~~~~~~~~~ 244 (280)
T PRK06914 222 GSDTFGNPIDVANLIVEIAESKR 244 (280)
T ss_pred hhhccCCHHHHHHHHHHHHcCCC
Confidence 23467899999999999998764
|
|
| >KOG1431|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.2e-17 Score=148.98 Aligned_cols=213 Identities=17% Similarity=0.112 Sum_probs=157.6
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+++|||||++|.+|+++++.+...|+.-.+.+.....
T Consensus 1 s~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~sk------------------------------------------- 37 (315)
T KOG1431|consen 1 SKKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIGSK------------------------------------------- 37 (315)
T ss_pred CceEEEecCCchHHHHHHHHHHhcCCCCcceEEeccc-------------------------------------------
Confidence 4799999999999999999998887422222222211
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccChh----hhHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRFD----EHIRTAYNINVKGT 201 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~~----~~~~~~~~~nv~~~ 201 (366)
.+||++.. +.+.+++ +..+|||+|+.+... ....+++..|+..-
T Consensus 38 ------------------------d~DLt~~a------~t~~lF~~ekPthVIhlAAmVGGlf~N~~ynldF~r~Nl~in 87 (315)
T KOG1431|consen 38 ------------------------DADLTNLA------DTRALFESEKPTHVIHLAAMVGGLFHNNTYNLDFIRKNLQIN 87 (315)
T ss_pred ------------------------cccccchH------HHHHHHhccCCceeeehHhhhcchhhcCCCchHHHhhcceec
Confidence 35777765 6777775 689999999976422 23467889999999
Q ss_pred HHHHHHHHhcCCCcEEEEeeCcceecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHH
Q psy17528 202 QTILALAKRMKGLKSFVHVSTAYCNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKAT 279 (366)
Q Consensus 202 ~~ll~~a~~~~~~~~~v~iSS~~~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~ 279 (366)
.+++..|-+. ++++++++.|++.|.+.. |++|...-.. ++++.-..|..+|.+
T Consensus 88 dNVlhsa~e~-gv~K~vsclStCIfPdkt~yPIdEtmvh~g------------------------pphpsN~gYsyAKr~ 142 (315)
T KOG1431|consen 88 DNVLHSAHEH-GVKKVVSCLSTCIFPDKTSYPIDETMVHNG------------------------PPHPSNFGYSYAKRM 142 (315)
T ss_pred hhHHHHHHHh-chhhhhhhcceeecCCCCCCCCCHHHhccC------------------------CCCCCchHHHHHHHH
Confidence 9999999987 899999999988886543 5666532110 111222579999988
Q ss_pred HHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHH----hcCc-ceeecCCCCcccCcccHHHHHH
Q psy17528 280 AEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGA----GTGL-IRVVQTDPNISMDVVPGDRVIN 352 (366)
Q Consensus 280 ~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~----~~g~-~~~l~~~~~~~~~~v~vdDva~ 352 (366)
+.-.-+.+. +|..++.+-|.++|||.++..++-..-+ ..++.++ ..|. ...+|+.|...+.|+|++|+|+
T Consensus 143 idv~n~aY~~qhg~~~tsviPtNvfGphDNfnpe~sHVl---Pali~r~h~ak~~gtd~~~VwGsG~PlRqFiys~DLA~ 219 (315)
T KOG1431|consen 143 IDVQNQAYRQQHGRDYTSVIPTNVFGPHDNFNPENSHVL---PALIHRFHEAKRNGTDELTVWGSGSPLRQFIYSDDLAD 219 (315)
T ss_pred HHHHHHHHHHHhCCceeeeccccccCCCCCCCcccccch---HHHHHHHHHHHhcCCceEEEecCCChHHHHhhHhHHHH
Confidence 887777777 8999999999999999988766544333 3344332 2344 5788999999999999999999
Q ss_pred HHHHHHHhh
Q psy17528 353 AMAALAWYF 361 (366)
Q Consensus 353 ai~~~~~~~ 361 (366)
++++++..-
T Consensus 220 l~i~vlr~Y 228 (315)
T KOG1431|consen 220 LFIWVLREY 228 (315)
T ss_pred HHHHHHHhh
Confidence 999998754
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.9e-16 Score=146.28 Aligned_cols=212 Identities=12% Similarity=0.056 Sum_probs=138.1
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
..+++++++||||+|+||.+++++|++.| .+|++++|+.. .+.+.+. +.
T Consensus 4 ~~~~~k~vlVtGas~gIG~~la~~l~~~G---~~v~~~~r~~~----~~~~~~~--------~~---------------- 52 (260)
T PRK12823 4 QRFAGKVVVVTGAAQGIGRGVALRAAAEG---ARVVLVDRSEL----VHEVAAE--------LR---------------- 52 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCchH----HHHHHHH--------HH----------------
Confidence 34678999999999999999999999998 78999998632 1111111 10
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC--------hhh
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR--------FDE 188 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~--------~~~ 188 (366)
.....+.++.+|+.+.+ .+..+++ .+|++|||||... ...
T Consensus 53 -------------------~~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~ 107 (260)
T PRK12823 53 -------------------AAGGEALALTADLETYA------GAQAAMAAAVEAFGRIDVLINNVGGTIWAKPFEEYEEE 107 (260)
T ss_pred -------------------hcCCeEEEEEEeCCCHH------HHHHHHHHHHHHcCCCeEEEECCccccCCCChhhCChH
Confidence 01245778899999875 4544443 5899999998531 123
Q ss_pred hHHHHHHHHHHHHHHHHHHHH----hcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhc
Q psy17528 189 HIRTAYNINVKGTQTILALAK----RMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEH 264 (366)
Q Consensus 189 ~~~~~~~~nv~~~~~ll~~a~----~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 264 (366)
.+...+++|+.+...+++.+. +. +..+||++||...++..
T Consensus 108 ~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~~sS~~~~~~~----------------------------------- 151 (260)
T PRK12823 108 QIEAEIRRSLFPTLWCCRAVLPHMLAQ-GGGAIVNVSSIATRGIN----------------------------------- 151 (260)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCeEEEEcCccccCCC-----------------------------------
Confidence 456677889888776555443 33 45689999997654211
Q ss_pred ccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCc---cccc-cchHHHHHHHHhcCcceeec
Q psy17528 265 IIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPL---WIKG-FNGVMALALGAGTGLIRVVQ 335 (366)
Q Consensus 265 ~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~---~~~~-~~~~~~~~~~~~~g~~~~l~ 335 (366)
...|+.+|...+.+++.+. +++++++++||.|+++....... .... ......+......+.+
T Consensus 152 -----~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 222 (260)
T PRK12823 152 -----RVPYSAAKGGVNALTASLAFEYAEHGIRVNAVAPGGTEAPPRRVPRNAAPQSEQEKAWYQQIVDQTLDSSL---- 222 (260)
T ss_pred -----CCccHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccCCcchhhHHhhccccccccccHHHHHHHHhccCC----
Confidence 1579999999999888765 58999999999999974210000 0000 0001122222222221
Q ss_pred CCCCcccCcccHHHHHHHHHHHHHhh
Q psy17528 336 TDPNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 336 ~~~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
..-+.+.+|+|++++.++...
T Consensus 223 -----~~~~~~~~dva~~~~~l~s~~ 243 (260)
T PRK12823 223 -----MKRYGTIDEQVAAILFLASDE 243 (260)
T ss_pred -----cccCCCHHHHHHHHHHHcCcc
Confidence 223557899999999887543
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.5e-16 Score=148.74 Aligned_cols=214 Identities=11% Similarity=0.033 Sum_probs=141.7
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
.+++|+||||+|+||++++++|++.| .+|++++|+... .+.+.+
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G---~~V~~~~r~~~~---~~~l~~------------------------------ 46 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAG---HRVVGTVRSEAA---RADFEA------------------------------ 46 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCc---CEEEEEeCCHHH---HHHHHh------------------------------
Confidence 46889999999999999999999998 889999997431 111111
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIRT 192 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~~ 192 (366)
....++.++.+|+.+.+ .+..+++ .+|+|||+||.... ...++.
T Consensus 47 ----------------~~~~~~~~~~~D~~d~~------~~~~~~~~~~~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~ 104 (277)
T PRK06180 47 ----------------LHPDRALARLLDVTDFD------AIDAVVADAEATFGPIDVLVNNAGYGHEGAIEESPLAEMRR 104 (277)
T ss_pred ----------------hcCCCeeEEEccCCCHH------HHHHHHHHHHHHhCCCCEEEECCCccCCcccccCCHHHHHH
Confidence 01246778899999976 5555554 57999999997432 234567
Q ss_pred HHHHHHHHHHHHHHHHHh---cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCC
Q psy17528 193 AYNINVKGTQTILALAKR---MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGK 269 (366)
Q Consensus 193 ~~~~nv~~~~~ll~~a~~---~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (366)
.+++|+.++..+++.+.+ ..+.+++|++||..+..... +
T Consensus 105 ~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS~~~~~~~~---------~----------------------------- 146 (277)
T PRK06180 105 QFEVNVFGAVAMTKAVLPGMRARRRGHIVNITSMGGLITMP---------G----------------------------- 146 (277)
T ss_pred HHHHHhHHHHHHHHHHHHHHhccCCCEEEEEecccccCCCC---------C-----------------------------
Confidence 789999999999887543 12456899999976542210 1
Q ss_pred CchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCC-CccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 270 PNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPM-PLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 270 ~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
...|+.+|...|.+++... .+++++++||+.+.++..... ..................... .. .....
T Consensus 147 ~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~ 220 (277)
T PRK06180 147 IGYYCGSKFALEGISESLAKEVAPFGIHVTAVEPGSFRTDWAGRSMVRTPRSIADYDALFGPIRQAR---EA---KSGKQ 220 (277)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCcccCccccccccCCCCcHhHHHHHHHHHHHH---Hh---hccCC
Confidence 1679999999998887655 589999999999988643221 100000110011110000000 00 11233
Q ss_pred cccHHHHHHHHHHHHHhhh
Q psy17528 344 VVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~~~ 362 (366)
+..++|+|++++.+++.+.
T Consensus 221 ~~~~~dva~~~~~~l~~~~ 239 (277)
T PRK06180 221 PGDPAKAAQAILAAVESDE 239 (277)
T ss_pred CCCHHHHHHHHHHHHcCCC
Confidence 5679999999999987654
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.4e-16 Score=147.87 Aligned_cols=214 Identities=15% Similarity=0.103 Sum_probs=142.4
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||++++++|++.| .+|++.+|+... .+++.+ .+..
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G---~~Vv~~~r~~~~---l~~~~~--------~l~~----------------- 52 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRG---ARVVLGDVDKPG---LRQAVN--------HLRA----------------- 52 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHH--------HHHh-----------------
Confidence 668999999999999999999999998 789888887432 111111 1111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
...++.++.+|+++.+ ++..+++ .+|+||||||... ....++
T Consensus 53 ------------------~~~~~~~~~~Dv~d~~------~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~ 108 (275)
T PRK05876 53 ------------------EGFDVHGVMCDVRHRE------EVTHLADEAFRLLGHVDVVFSNAGIVVGGPIVEMTHDDWR 108 (275)
T ss_pred ------------------cCCeEEEEeCCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHH
Confidence 1235778899999976 6665554 4799999999642 123456
Q ss_pred HHHHHHHHHHHHHHHHHHh----cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 192 TAYNINVKGTQTILALAKR----MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~----~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
..+++|+.++..+++.+.. .+...++|++||..++....
T Consensus 109 ~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~~~~~~~~------------------------------------- 151 (275)
T PRK05876 109 WVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLVPNA------------------------------------- 151 (275)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCChhhccCCC-------------------------------------
Confidence 7889999999998887642 22246899999986552211
Q ss_pred CCCchHHHHHHH----HHHHHHHhc-CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKAT----AEDLVRQVG-HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~----~E~~l~~~~-~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
....|+.+|.. .|.+..++. +++.+++++|+.+.++......... .............+.....+
T Consensus 152 -~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 221 (275)
T PRK05876 152 -GLGAYGVAKYGVVGLAETLAREVTADGIGVSVLCPMVVETNLVANSERIR---------GAACAQSSTTGSPGPLPLQD 221 (275)
T ss_pred -CCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCccccccccchhhhc---------Cccccccccccccccccccc
Confidence 12679999996 455554444 7899999999999876432110000 00000000111122223456
Q ss_pred CcccHHHHHHHHHHHHHhh
Q psy17528 343 DVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~ 361 (366)
++++++|+|++++.+++..
T Consensus 222 ~~~~~~dva~~~~~ai~~~ 240 (275)
T PRK05876 222 DNLGVDDIAQLTADAILAN 240 (275)
T ss_pred cCCCHHHHHHHHHHHHHcC
Confidence 7899999999999988765
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.2e-16 Score=160.08 Aligned_cols=221 Identities=17% Similarity=0.177 Sum_probs=147.9
Q ss_pred cccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccc
Q psy17528 43 QEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGIT 122 (366)
Q Consensus 43 ~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (366)
.+.+.+++||||||+|+||++++++|++.| ++|++++|+.... +++.+.+... .+...
T Consensus 75 ~~~~~gKvVLVTGATGgIG~aLAr~LLk~G---~~Vval~Rn~ekl---~~l~~~l~~~---~L~~~------------- 132 (576)
T PLN03209 75 LDTKDEDLAFVAGATGKVGSRTVRELLKLG---FRVRAGVRSAQRA---ESLVQSVKQM---KLDVE------------- 132 (576)
T ss_pred cccCCCCEEEEECCCCHHHHHHHHHHHHCC---CeEEEEeCCHHHH---HHHHHHhhhh---ccccc-------------
Confidence 455678999999999999999999999998 8899999975321 1111110000 00000
Q ss_pred cccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh-hhHHHHHHHHHHHH
Q psy17528 123 HRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD-EHIRTAYNINVKGT 201 (366)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~-~~~~~~~~~nv~~~ 201 (366)
......++.++.+|+.+.+ .+...+.++|+|||++|..... ..+...+++|+.++
T Consensus 133 ------------------Ga~~~~~v~iV~gDLtD~e------sI~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt 188 (576)
T PLN03209 133 ------------------GTQPVEKLEIVECDLEKPD------QIGPALGNASVVICCIGASEKEVFDVTGPYRIDYLAT 188 (576)
T ss_pred ------------------cccccCceEEEEecCCCHH------HHHHHhcCCCEEEEccccccccccchhhHHHHHHHHH
Confidence 0001246889999999876 7888889999999999865321 23455678999999
Q ss_pred HHHHHHHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHH
Q psy17528 202 QTILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAE 281 (366)
Q Consensus 202 ~~ll~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E 281 (366)
.++++++.+. ++++||++||.++..... .... . .....|...|..+|
T Consensus 189 ~nLl~Aa~~a-gVgRIV~VSSiga~~~g~--p~~~----~--------------------------~sk~~~~~~KraaE 235 (576)
T PLN03209 189 KNLVDAATVA-KVNHFILVTSLGTNKVGF--PAAI----L--------------------------NLFWGVLCWKRKAE 235 (576)
T ss_pred HHHHHHHHHh-CCCEEEEEccchhcccCc--cccc----h--------------------------hhHHHHHHHHHHHH
Confidence 9999999886 788999999986531110 0000 0 00156888899999
Q ss_pred HHHHHhcCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhh
Q psy17528 282 DLVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 282 ~~l~~~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
+.+... |+++++||||.++++...... .+.. .+........-++..+|||++++.++.++
T Consensus 236 ~~L~~s--GIrvTIVRPG~L~tp~d~~~~-----------------t~~v-~~~~~d~~~gr~isreDVA~vVvfLasd~ 295 (576)
T PLN03209 236 EALIAS--GLPYTIVRPGGMERPTDAYKE-----------------THNL-TLSEEDTLFGGQVSNLQVAELMACMAKNR 295 (576)
T ss_pred HHHHHc--CCCEEEEECCeecCCcccccc-----------------ccce-eeccccccCCCccCHHHHHHHHHHHHcCc
Confidence 998765 799999999999876432100 0000 01111112233588999999999988855
Q ss_pred h
Q psy17528 362 L 362 (366)
Q Consensus 362 ~ 362 (366)
.
T Consensus 296 ~ 296 (576)
T PLN03209 296 R 296 (576)
T ss_pred h
Confidence 3
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.9e-16 Score=148.93 Aligned_cols=210 Identities=12% Similarity=0.097 Sum_probs=141.0
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
.+++|+||||+|+||++++++|++.| ++|++++|+.... +.+.+
T Consensus 2 ~~k~vlItGasg~iG~~~a~~l~~~g---~~V~~~~r~~~~~---~~~~~------------------------------ 45 (275)
T PRK08263 2 MEKVWFITGASRGFGRAWTEAALERG---DRVVATARDTATL---ADLAE------------------------------ 45 (275)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEECCHHHH---HHHHH------------------------------
Confidence 46799999999999999999999998 7899999974321 11111
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIRT 192 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~~ 192 (366)
.....+.++.+|+.+.+ .+..+++ .+|+|||+||.... ...++.
T Consensus 46 ----------------~~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~ 103 (275)
T PRK08263 46 ----------------KYGDRLLPLALDVTDRA------AVFAAVETAVEHFGRLDIVVNNAGYGLFGMIEEVTESEARA 103 (275)
T ss_pred ----------------hccCCeeEEEccCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCccccccccCCHHHHHH
Confidence 01245778899999876 5554443 57999999997532 245678
Q ss_pred HHHHHHHHHHHHHHHH----HhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 193 AYNINVKGTQTILALA----KRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 193 ~~~~nv~~~~~ll~~a----~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
.+++|+.++..+++.+ ++. +.+++|++||...+....
T Consensus 104 ~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~vsS~~~~~~~~-------------------------------------- 144 (275)
T PRK08263 104 QIDTNFFGALWVTQAVLPYLREQ-RSGHIIQISSIGGISAFP-------------------------------------- 144 (275)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhc-CCCEEEEEcChhhcCCCC--------------------------------------
Confidence 8999999988877765 333 567999999986653221
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
....|+.+|+..+.+.+... .|++++++|||.+.++...+.................... ......
T Consensus 145 ~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 215 (275)
T PRK08263 145 MSGIYHASKWALEGMSEALAQEVAEFGIKVTLVEPGGYSTDWAGTSAKRATPLDAYDTLREELAE---------QWSERS 215 (275)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCccCCccccccccCCCchhhhhHHHHHHH---------HHHhcc
Confidence 01679999999888886654 5899999999999876542111100001000111011100 011223
Q ss_pred c-ccHHHHHHHHHHHHHhhh
Q psy17528 344 V-VPGDRVINAMAALAWYFL 362 (366)
Q Consensus 344 ~-v~vdDva~ai~~~~~~~~ 362 (366)
+ +..+|++++++.+++.+.
T Consensus 216 ~~~~p~dva~~~~~l~~~~~ 235 (275)
T PRK08263 216 VDGDPEAAAEALLKLVDAEN 235 (275)
T ss_pred CCCCHHHHHHHHHHHHcCCC
Confidence 4 889999999999998654
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.4e-16 Score=143.01 Aligned_cols=206 Identities=12% Similarity=0.085 Sum_probs=136.2
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
++++||||||+|+||++++++|++.| .+|++++|+... ..+.+.+.+. .
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~g---~~v~~~~r~~~~--~~~~~~~~~~--------~------------------ 53 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAAG---YRVAIHYHRSAA--EADALAAELN--------A------------------ 53 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEcCCCHH--HHHHHHHHHH--------h------------------
Confidence 46899999999999999999999998 789999986421 1111211111 0
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIRT 192 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~~ 192 (366)
.....+.++.+|+.+.+ .+..+++ .+|+|||+||... ....++.
T Consensus 54 ----------------~~~~~~~~~~~Dl~~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~ 111 (249)
T PRK09135 54 ----------------LRPGSAAALQADLLDPD------ALPELVAACVAAFGRLDALVNNASSFYPTPLGSITEAQWDD 111 (249)
T ss_pred ----------------hcCCceEEEEcCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHH
Confidence 01235788999999876 5665554 5799999999632 1234577
Q ss_pred HHHHHHHHHHHHHHHHHhc--CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCC
Q psy17528 193 AYNINVKGTQTILALAKRM--KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKP 270 (366)
Q Consensus 193 ~~~~nv~~~~~ll~~a~~~--~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (366)
.+++|+.++..+++++.+. .....++.+++.... ...++ .
T Consensus 112 ~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~-----------------------------~ 153 (249)
T PRK09135 112 LFASNLKAPFFLSQAAAPQLRKQRGAIVNITDIHAE---------RPLKG-----------------------------Y 153 (249)
T ss_pred HHHHhchhHHHHHHHHHHHHhhCCeEEEEEeChhhc---------CCCCC-----------------------------c
Confidence 8899999999999988642 122356666553321 11111 1
Q ss_pred chHHHHHHHHHHHHHHhc----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCccc
Q psy17528 271 NSYTLTKATAEDLVRQVG----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVP 346 (366)
Q Consensus 271 ~~Y~~sK~~~E~~l~~~~----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~ 346 (366)
..|+.+|+..|.+++.+. .+++++++||+.++|+.... . +. .........+.+ ...+.+
T Consensus 154 ~~Y~~sK~~~~~~~~~l~~~~~~~i~~~~v~pg~~~~~~~~~--~----~~--~~~~~~~~~~~~---------~~~~~~ 216 (249)
T PRK09135 154 PVYCAAKAALEMLTRSLALELAPEVRVNAVAPGAILWPEDGN--S----FD--EEARQAILARTP---------LKRIGT 216 (249)
T ss_pred hhHHHHHHHHHHHHHHHHHHHCCCCeEEEEEeccccCccccc--c----CC--HHHHHHHHhcCC---------cCCCcC
Confidence 689999999999998766 46999999999999997532 1 11 111111222211 112335
Q ss_pred HHHHHHHHHHHHHh
Q psy17528 347 GDRVINAMAALAWY 360 (366)
Q Consensus 347 vdDva~ai~~~~~~ 360 (366)
++|+|+++..++..
T Consensus 217 ~~d~a~~~~~~~~~ 230 (249)
T PRK09135 217 PEDIAEAVRFLLAD 230 (249)
T ss_pred HHHHHHHHHHHcCc
Confidence 89999999766643
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.5e-16 Score=147.87 Aligned_cols=212 Identities=11% Similarity=0.121 Sum_probs=142.5
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
..++++++||||+|+||++++++|++.| .+|+++.|+... .+.+.+ .+..
T Consensus 7 ~~~~~~vlVtGa~g~iG~~la~~L~~~G---~~V~~~~r~~~~---~~~~~~--------~~~~---------------- 56 (274)
T PRK07775 7 HPDRRPALVAGASSGIGAATAIELAAAG---FPVALGARRVEK---CEELVD--------KIRA---------------- 56 (274)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHH--------HHHh----------------
Confidence 3556899999999999999999999998 788888886421 111111 1100
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHI 190 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~ 190 (366)
...++.++.+|+++.+ .+..+++ ++|+|||+||.... ...+
T Consensus 57 -------------------~~~~~~~~~~Dl~~~~------~~~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~ 111 (274)
T PRK07775 57 -------------------DGGEAVAFPLDVTDPD------SVKSFVAQAEEALGEIEVLVSGAGDTYFGKLHEISTEQF 111 (274)
T ss_pred -------------------cCCeEEEEECCCCCHH------HHHHHHHHHHHhcCCCCEEEECCCcCCCcccccCCHHHH
Confidence 1246778899999876 5655553 57999999997431 2345
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 191 RTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
...+++|+.++..+++.+.+. .+..+||++||..++....
T Consensus 112 ~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~isS~~~~~~~~------------------------------------- 154 (274)
T PRK07775 112 ESQVQIHLVGANRLATAVLPGMIERRRGDLIFVGSDVALRQRP------------------------------------- 154 (274)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECChHhcCCCC-------------------------------------
Confidence 667889999999988876431 2446899999986553211
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
....|+.+|+..|.+++.+. .+++++++|||.+.++...... . .....++..... +. +....
T Consensus 155 -~~~~Y~~sK~a~~~l~~~~~~~~~~~gi~v~~v~pG~~~t~~~~~~~---~--~~~~~~~~~~~~------~~-~~~~~ 221 (274)
T PRK07775 155 -HMGAYGAAKAGLEAMVTNLQMELEGTGVRASIVHPGPTLTGMGWSLP---A--EVIGPMLEDWAK------WG-QARHD 221 (274)
T ss_pred -CcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCCcccCcccccCC---h--hhhhHHHHHHHH------hc-ccccc
Confidence 01579999999999998765 4899999999988655321100 0 000111111111 11 12245
Q ss_pred CcccHHHHHHHHHHHHHhh
Q psy17528 343 DVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~ 361 (366)
.+++++|+|++++.+++++
T Consensus 222 ~~~~~~dva~a~~~~~~~~ 240 (274)
T PRK07775 222 YFLRASDLARAITFVAETP 240 (274)
T ss_pred cccCHHHHHHHHHHHhcCC
Confidence 6999999999999998765
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.5e-16 Score=146.42 Aligned_cols=210 Identities=13% Similarity=0.083 Sum_probs=142.7
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||++++++|++.| ++|+++.|+... ...... .+
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G---~~v~~~~r~~~~------~~~~~~-----~~------------------- 49 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREG---ARVVVADRDAEA------AERVAA-----AI------------------- 49 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCC---CeEEEecCCHHH------HHHHHH-----HH-------------------
Confidence 457899999999999999999999998 889999987431 111100 00
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
. ...++.++.+|+.+.+ .+.++++ ++|+|||++|... ....+.
T Consensus 50 ---------------~--~~~~~~~~~~D~~~~~------~~~~~~~~i~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~ 106 (252)
T PRK06138 50 ---------------A--AGGRAFARQGDVGSAE------AVEALVDFVAARWGRLDVLVNNAGFGCGGTVVTTDEADWD 106 (252)
T ss_pred ---------------h--cCCeEEEEEcCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHH
Confidence 0 1246789999999976 5655543 6899999999643 123456
Q ss_pred HHHHHHHHHHHHHHHHHH----hcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 192 TAYNINVKGTQTILALAK----RMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~----~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
..+++|+.++..+.+.+. +. +.++|+++||.......
T Consensus 107 ~~~~~n~~~~~~l~~~~~~~~~~~-~~~~ii~~sS~~~~~~~-------------------------------------- 147 (252)
T PRK06138 107 AVMRVNVGGVFLWAKYAIPIMQRQ-GGGSIVNTASQLALAGG-------------------------------------- 147 (252)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHhc-CCeEEEEECChhhccCC--------------------------------------
Confidence 678899999877766543 33 56789999997543211
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
.....|+.+|...+.+++.+. .+++++++||+.++++.......+. .. .........+ .....
T Consensus 148 ~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~---~~-~~~~~~~~~~--------~~~~~ 215 (252)
T PRK06138 148 RGRAAYVASKGAIASLTRAMALDHATDGIRVNAVAPGTIDTPYFRRIFARH---AD-PEALREALRA--------RHPMN 215 (252)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEECCccCcchhhhhccc---cC-hHHHHHHHHh--------cCCCC
Confidence 011679999999999988765 5899999999999987543211110 00 0011111111 11123
Q ss_pred CcccHHHHHHHHHHHHHhhh
Q psy17528 343 DVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~~ 362 (366)
.+++++|++++++.++..+.
T Consensus 216 ~~~~~~d~a~~~~~l~~~~~ 235 (252)
T PRK06138 216 RFGTAEEVAQAALFLASDES 235 (252)
T ss_pred CCcCHHHHHHHHHHHcCchh
Confidence 47899999999999987764
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.5e-16 Score=148.83 Aligned_cols=166 Identities=14% Similarity=0.074 Sum_probs=117.1
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++||||||+|+||++++++|++.| ++|++++|+.+. .+++.+.+.
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G---~~V~~~~r~~~~---~~~~~~~~~-------------------------- 51 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALG---MKLVLADVQQDA---LDRAVAELR-------------------------- 51 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCC---CEEEEEeCChHH---HHHHHHHHH--------------------------
Confidence 557899999999999999999999998 789999986432 111111110
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~ 191 (366)
....++.++.+|+++.+ ++..+++ .+|+|||+||.... ...++
T Consensus 52 -----------------~~~~~~~~~~~D~~d~~------~~~~~~~~~~~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~ 108 (287)
T PRK06194 52 -----------------AQGAEVLGVRTDVSDAA------QVEALADAALERFGAVHLLFNNAGVGAGGLVWENSLADWE 108 (287)
T ss_pred -----------------hcCCeEEEEECCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHH
Confidence 01246788999999976 6666554 47999999997532 24456
Q ss_pred HHHHHHHHHHHHHHHHH----HhcCC-----CcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhh
Q psy17528 192 TAYNINVKGTQTILALA----KRMKG-----LKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLN 262 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a----~~~~~-----~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 262 (366)
..+++|+.++..+++++ .+... ..++|++||..++....
T Consensus 109 ~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~-------------------------------- 156 (287)
T PRK06194 109 WVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLLAPP-------------------------------- 156 (287)
T ss_pred HHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCCC--------------------------------
Confidence 67899999998877764 33211 15899999987653211
Q ss_pred hcccCCCCchHHHHHHHHHHHHHHhc-------CCCCEEEEecCccccC
Q psy17528 263 EHIIGGKPNSYTLTKATAEDLVRQVG-------HELPICVLRPSIVFPT 304 (366)
Q Consensus 263 ~~~~~~~~~~Y~~sK~~~E~~l~~~~-------~gl~~~ilRp~~v~G~ 304 (366)
....|+.+|...|.+++.+. .++.+..+.|+.|..+
T Consensus 157 ------~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~pg~i~t~ 199 (287)
T PRK06194 157 ------AMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLCPYFVPTG 199 (287)
T ss_pred ------CCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEeCcccCc
Confidence 01679999999999987655 2366667777766543
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.8e-16 Score=141.00 Aligned_cols=195 Identities=17% Similarity=0.145 Sum_probs=138.9
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++||||||+|+||++++++|++.| ++|++++|+.... .+.+.++ .
T Consensus 5 ~~~k~vlItGatg~iG~~la~~l~~~G---~~v~~~~r~~~~~--~~~~~~~---------~------------------ 52 (239)
T PRK12828 5 LQGKVVAITGGFGGLGRATAAWLAARG---ARVALIGRGAAPL--SQTLPGV---------P------------------ 52 (239)
T ss_pred CCCCEEEEECCCCcHhHHHHHHHHHCC---CeEEEEeCChHhH--HHHHHHH---------h------------------
Confidence 457899999999999999999999998 7899999975321 1111110 0
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~ 191 (366)
...+.++.+|+.+.+ ++..+++ ++|+|||+++.... ...+.
T Consensus 53 -------------------~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~ 107 (239)
T PRK12828 53 -------------------ADALRIGGIDLVDPQ------AARRAVDEVNRQFGRLDALVNIAGAFVWGTIADGDADTWD 107 (239)
T ss_pred -------------------hcCceEEEeecCCHH------HHHHHHHHHHHHhCCcCEEEECCcccCcCChhhCCHHHHH
Confidence 124567789999876 5555543 58999999996431 23446
Q ss_pred HHHHHHHHHHHHHHHHHHh---cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKR---MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~---~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
+.+++|+.++..+++++.+ ..+.+++|++||..++.... +
T Consensus 108 ~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~---------~---------------------------- 150 (239)
T PRK12828 108 RMYGVNVKTTLNASKAALPALTASGGGRIVNIGAGAALKAGP---------G---------------------------- 150 (239)
T ss_pred HHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECchHhccCCC---------C----------------------------
Confidence 6788999999998887642 13678999999987653221 0
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
...|+.+|...+.+++... .+++++++||+.++++..... . .......
T Consensus 151 -~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~i~pg~v~~~~~~~~------------------------~--~~~~~~~ 203 (239)
T PRK12828 151 -MGAYAAAKAGVARLTEALAAELLDRGITVNAVLPSIIDTPPNRAD------------------------M--PDADFSR 203 (239)
T ss_pred -cchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcchhhc------------------------C--Cchhhhc
Confidence 1579999998888886654 589999999999998732110 0 0011234
Q ss_pred cccHHHHHHHHHHHHHhh
Q psy17528 344 VVPGDRVINAMAALAWYF 361 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~~ 361 (366)
|++++|+|++++.+++..
T Consensus 204 ~~~~~dva~~~~~~l~~~ 221 (239)
T PRK12828 204 WVTPEQIAAVIAFLLSDE 221 (239)
T ss_pred CCCHHHHHHHHHHHhCcc
Confidence 899999999999988754
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.2e-16 Score=144.43 Aligned_cols=214 Identities=15% Similarity=0.142 Sum_probs=143.1
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
++++++|+||||+|+||++++++|+++| ++|++++|+... .+.+.+. +..
T Consensus 2 ~l~~k~vlItGa~~~IG~~la~~l~~~G---~~V~~~~r~~~~---~~~~~~~--------~~~---------------- 51 (258)
T PRK07890 2 LLKGKVVVVSGVGPGLGRTLAVRAARAG---ADVVLAARTAER---LDEVAAE--------IDD---------------- 51 (258)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHcC---CEEEEEeCCHHH---HHHHHHH--------HHH----------------
Confidence 4568999999999999999999999998 799999997431 1112111 110
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh--------hhh
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF--------DEH 189 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~--------~~~ 189 (366)
...++.++.+|+++.+ .+..+++ .+|+|||+||.... ...
T Consensus 52 -------------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~g~~d~vi~~ag~~~~~~~~~~~~~~~ 106 (258)
T PRK07890 52 -------------------LGRRALAVPTDITDED------QCANLVALALERFGRVDALVNNAFRVPSMKPLADADFAH 106 (258)
T ss_pred -------------------hCCceEEEecCCCCHH------HHHHHHHHHHHHcCCccEEEECCccCCCCCCcccCCHHH
Confidence 1246788999999876 5554443 57999999986421 245
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc--CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 190 IRTAYNINVKGTQTILALAKRM--KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 190 ~~~~~~~nv~~~~~ll~~a~~~--~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
+...+++|+.++..+++.+.+. ....+||++||........
T Consensus 107 ~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~~~~~~~------------------------------------- 149 (258)
T PRK07890 107 WRAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMVLRHSQP------------------------------------- 149 (258)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechhhccCCC-------------------------------------
Confidence 5778899999999999887642 1235899999975432110
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCc-cccccc-hHHHHHHHHhcCcceeecCCCCc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPL-WIKGFN-GVMALALGAGTGLIRVVQTDPNI 340 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~-~~~~~~-~~~~~~~~~~~g~~~~l~~~~~~ 340 (366)
....|+.+|...+.+++.+. +++++++++||.++++....... ...... ....+...... ...
T Consensus 150 -~~~~Y~~sK~a~~~l~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 219 (258)
T PRK07890 150 -KYGAYKMAKGALLAASQSLATELGPQGIRVNSVAPGYIWGDPLKGYFRHQAGKYGVTVEQIYAETAA---------NSD 219 (258)
T ss_pred -CcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEeCCccCcHHHHHHhhhcccccCCCHHHHHHHHhh---------cCC
Confidence 11679999999999888766 58999999999999985321100 000000 00011111111 112
Q ss_pred ccCcccHHHHHHHHHHHHHh
Q psy17528 341 SMDVVPGDRVINAMAALAWY 360 (366)
Q Consensus 341 ~~~~v~vdDva~ai~~~~~~ 360 (366)
...+.+++|++++++.++..
T Consensus 220 ~~~~~~~~dva~a~~~l~~~ 239 (258)
T PRK07890 220 LKRLPTDDEVASAVLFLASD 239 (258)
T ss_pred ccccCCHHHHHHHHHHHcCH
Confidence 23478899999999988874
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-16 Score=148.94 Aligned_cols=213 Identities=13% Similarity=0.143 Sum_probs=143.8
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+.+++++||||+|+||.++++.|++.| ++|++++|+... .+++.+.
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G---~~v~~~~r~~~~---~~~~~~~---------------------------- 49 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEG---ARVVIADIKPAR---ARLAALE---------------------------- 49 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcC---CEEEEEcCCHHH---HHHHHHH----------------------------
Confidence 457899999999999999999999998 889999987431 1111110
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~ 191 (366)
...++.++.+|+.+.+ .+..+++ .+|++||+||.... ...++
T Consensus 50 ------------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~ 105 (257)
T PRK07067 50 ------------------IGPAAIAVSLDVTRQD------SIDRIVAAAVERFGGIDILFNNAALFDMAPILDISRDSYD 105 (257)
T ss_pred ------------------hCCceEEEEccCCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHH
Confidence 1135788899999876 5555554 57999999996531 24567
Q ss_pred HHHHHHHHHHHHHHHHHHhc----CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 192 TAYNINVKGTQTILALAKRM----KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~----~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
..+++|+.++..+++++... ....++|++||........ +
T Consensus 106 ~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~---------~--------------------------- 149 (257)
T PRK07067 106 RLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGRRGEA---------L--------------------------- 149 (257)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhCCCCC---------C---------------------------
Confidence 78899999999999887542 1224899999964321110 1
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
...|+.+|...+.+++... +++++++++|+.|+++.............. + ..+......+.+....
T Consensus 150 --~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~ 220 (257)
T PRK07067 150 --VSHYCATKAAVISYTQSAALALIRHGINVNAIAPGVVDTPMWDQVDALFARYEN---R----PPGEKKRLVGEAVPLG 220 (257)
T ss_pred --CchhhhhHHHHHHHHHHHHHHhcccCeEEEEEeeCcccchhhhhhhhhhhhccC---C----CHHHHHHHHhhcCCCC
Confidence 1679999999988887654 689999999999999753211000000000 0 0000001122333457
Q ss_pred CcccHHHHHHHHHHHHHhh
Q psy17528 343 DVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~ 361 (366)
.+++.+|+|++++.++...
T Consensus 221 ~~~~~~dva~~~~~l~s~~ 239 (257)
T PRK07067 221 RMGVPDDLTGMALFLASAD 239 (257)
T ss_pred CccCHHHHHHHHHHHhCcc
Confidence 8999999999999988754
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-16 Score=151.22 Aligned_cols=179 Identities=13% Similarity=0.136 Sum_probs=124.3
Q ss_pred eEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccccc
Q psy17528 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNYF 129 (366)
Q Consensus 50 ~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (366)
+|+||||||++|++++++|++.| ++|.+++|+.++..
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g---~~V~~~~R~~~~~~---------------------------------------- 37 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAAS---VPFLVASRSSSSSA---------------------------------------- 37 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCC---CcEEEEeCCCcccc----------------------------------------
Confidence 58999999999999999999998 78999999865311
Q ss_pred chhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH------hC-cCEEEEcCcccChhhhHHHHHHHHHHHHH
Q psy17528 130 NDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI------SQ-TTIIFHIAATVRFDEHIRTAYNINVKGTQ 202 (366)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~------~~-~d~Vih~a~~~~~~~~~~~~~~~nv~~~~ 202 (366)
...+..+.+|+.|++ .+..++ .+ +|.|+|+++.... ......
T Consensus 38 ---------------~~~~~~~~~d~~d~~------~l~~a~~~~~~~~g~~d~v~~~~~~~~~----------~~~~~~ 86 (285)
T TIGR03649 38 ---------------GPNEKHVKFDWLDED------TWDNPFSSDDGMEPEISAVYLVAPPIPD----------LAPPMI 86 (285)
T ss_pred ---------------CCCCccccccCCCHH------HHHHHHhcccCcCCceeEEEEeCCCCCC----------hhHHHH
Confidence 134566789999987 787777 56 9999999874321 023345
Q ss_pred HHHHHHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHH
Q psy17528 203 TILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAED 282 (366)
Q Consensus 203 ~ll~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~ 282 (366)
+++++|++. ++++||++||..+.... ..+...|.
T Consensus 87 ~~i~aa~~~-gv~~~V~~Ss~~~~~~~---------------------------------------------~~~~~~~~ 120 (285)
T TIGR03649 87 KFIDFARSK-GVRRFVLLSASIIEKGG---------------------------------------------PAMGQVHA 120 (285)
T ss_pred HHHHHHHHc-CCCEEEEeeccccCCCC---------------------------------------------chHHHHHH
Confidence 788888887 89999999996543110 01122344
Q ss_pred HHHHhcCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 283 LVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 283 ~l~~~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
.+++. .++++++|||+.+|.....+ + +... .......+...++..++|++++|+|++++.++..+.
T Consensus 121 ~l~~~-~gi~~tilRp~~f~~~~~~~---~---------~~~~-~~~~~~~~~~~g~~~~~~v~~~Dva~~~~~~l~~~~ 186 (285)
T TIGR03649 121 HLDSL-GGVEYTVLRPTWFMENFSEE---F---------HVEA-IRKENKIYSATGDGKIPFVSADDIARVAYRALTDKV 186 (285)
T ss_pred HHHhc-cCCCEEEEeccHHhhhhccc---c---------cccc-cccCCeEEecCCCCccCcccHHHHHHHHHHHhcCCC
Confidence 55443 37999999999888543111 0 0011 111112233456788999999999999999988764
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=8e-16 Score=143.51 Aligned_cols=207 Identities=12% Similarity=0.136 Sum_probs=138.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEE-EcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILL-IRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~-~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
+++++|+||||+|+||++++++|++.| ++|+++ .|+... .+.+.+ .+..
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~G---~~v~i~~~r~~~~---~~~~~~--------~~~~---------------- 53 (254)
T PRK12746 4 LDGKVALVTGASRGIGRAIAMRLANDG---ALVAIHYGRNKQA---ADETIR--------EIES---------------- 53 (254)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEcCCCHHH---HHHHHH--------HHHh----------------
Confidence 557899999999999999999999998 677664 454311 111111 1110
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------------CcCEEEEcCcccCh-----
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------------QTTIIFHIAATVRF----- 186 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------------~~d~Vih~a~~~~~----- 186 (366)
...++.++.+|+.+.+ .+..+++ ++|+|||+||....
T Consensus 54 -------------------~~~~~~~~~~D~~d~~------~i~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~ 108 (254)
T PRK12746 54 -------------------NGGKAFLIEADLNSID------GVKKLVEQLKNELQIRVGTSEIDILVNNAGIGTQGTIEN 108 (254)
T ss_pred -------------------cCCcEEEEEcCcCCHH------HHHHHHHHHHHHhccccCCCCccEEEECCCCCCCCChhh
Confidence 1246788999999976 5555443 48999999997431
Q ss_pred --hhhHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhh
Q psy17528 187 --DEHIRTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNE 263 (366)
Q Consensus 187 --~~~~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 263 (366)
...+...+++|+.++..+++.+.+. ....++|++||..++....
T Consensus 109 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS~~~~~~~~--------------------------------- 155 (254)
T PRK12746 109 TTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVRLGFT--------------------------------- 155 (254)
T ss_pred CCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCHHhcCCCC---------------------------------
Confidence 1234667889999999999987652 2335899999986653211
Q ss_pred cccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCC
Q psy17528 264 HIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDP 338 (366)
Q Consensus 264 ~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~ 338 (366)
....|+.+|...|.+++... .++++++++|+.++++....... ...+...... .
T Consensus 156 -----~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~pg~~~t~~~~~~~~--------~~~~~~~~~~--------~ 214 (254)
T PRK12746 156 -----GSIAYGLSKGALNTMTLPLAKHLGERGITVNTIMPGYTKTDINAKLLD--------DPEIRNFATN--------S 214 (254)
T ss_pred -----CCcchHhhHHHHHHHHHHHHHHHhhcCcEEEEEEECCccCcchhhhcc--------ChhHHHHHHh--------c
Confidence 01679999999998876654 57999999999998875321100 0001111111 1
Q ss_pred CcccCcccHHHHHHHHHHHHHhh
Q psy17528 339 NISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 339 ~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
.....+++++|+++++..++...
T Consensus 215 ~~~~~~~~~~dva~~~~~l~~~~ 237 (254)
T PRK12746 215 SVFGRIGQVEDIADAVAFLASSD 237 (254)
T ss_pred CCcCCCCCHHHHHHHHHHHcCcc
Confidence 12346778999999999887654
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-15 Score=141.68 Aligned_cols=204 Identities=15% Similarity=0.154 Sum_probs=140.5
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+++||||||+|+||.+++++|++.| .+|++++|+... .+.+.+.+. .
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g---~~Vi~~~r~~~~---~~~~~~~l~--------~------------------- 47 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAG---AQLVLAARNETR---LASLAQELA--------D------------------- 47 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHHHH--------h-------------------
Confidence 4689999999999999999999998 789999987431 111111111 0
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh--------hhhHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF--------DEHIRT 192 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~--------~~~~~~ 192 (366)
...++.++.+|+.+.+ .+..+++ ++|+|||++|.... ...+..
T Consensus 48 ----------------~~~~~~~~~~Dl~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~ 105 (263)
T PRK06181 48 ----------------HGGEALVVPTDVSDAE------ACERLIEAAVARFGGIDILVNNAGITMWSRFDELTDLSVFER 105 (263)
T ss_pred ----------------cCCcEEEEEccCCCHH------HHHHHHHHHHHHcCCCCEEEECCCcccccchhccCCHHHHHH
Confidence 1246788999999976 5665554 57999999996431 122456
Q ss_pred HHHHHHHHHHHHHHHHHhc--CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCC
Q psy17528 193 AYNINVKGTQTILALAKRM--KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKP 270 (366)
Q Consensus 193 ~~~~nv~~~~~ll~~a~~~--~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (366)
.++.|+.++..+++.+.+. ....++|++||...+.... ..
T Consensus 106 ~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~~~~~~~--------------------------------------~~ 147 (263)
T PRK06181 106 VMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLAGLTGVP--------------------------------------TR 147 (263)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecccccCCCC--------------------------------------Cc
Confidence 7899999999998887531 1346899999986653211 01
Q ss_pred chHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcc
Q psy17528 271 NSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVV 345 (366)
Q Consensus 271 ~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v 345 (366)
..|+.+|...|.+.+... .++++++++||.+.++....... ..+.. ....+....+++
T Consensus 148 ~~Y~~sK~~~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~~~---------------~~~~~--~~~~~~~~~~~~ 210 (263)
T PRK06181 148 SGYAASKHALHGFFDSLRIELADDGVAVTVVCPGFVATDIRKRALD---------------GDGKP--LGKSPMQESKIM 210 (263)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhcCceEEEEecCccccCcchhhcc---------------ccccc--cccccccccCCC
Confidence 679999999998886654 68999999999998764321000 00111 111222234789
Q ss_pred cHHHHHHHHHHHHHhh
Q psy17528 346 PGDRVINAMAALAWYF 361 (366)
Q Consensus 346 ~vdDva~ai~~~~~~~ 361 (366)
+++|+|++++.+++..
T Consensus 211 ~~~dva~~i~~~~~~~ 226 (263)
T PRK06181 211 SAEECAEAILPAIARR 226 (263)
T ss_pred CHHHHHHHHHHHhhCC
Confidence 9999999999988754
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-15 Score=142.28 Aligned_cols=214 Identities=13% Similarity=0.117 Sum_probs=140.3
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++||||||+|+||++++++|++.| ++|++..|+... .+.+... .++.
T Consensus 4 ~~~~~vlitGasg~iG~~l~~~l~~~g---~~v~~~~~~~~~-----~~~~~~~-----~~~~----------------- 53 (252)
T PRK06077 4 LKDKVVVVTGSGRGIGRAIAVRLAKEG---SLVVVNAKKRAE-----EMNETLK-----MVKE----------------- 53 (252)
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHCC---CEEEEEeCCChH-----HHHHHHH-----HHHH-----------------
Confidence 357899999999999999999999998 677776665321 1111100 0100
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~ 191 (366)
...++.++.+|+.+.+ .+..+++ .+|+|||+||.... .....
T Consensus 54 ------------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~ 109 (252)
T PRK06077 54 ------------------NGGEGIGVLADVSTRE------GCETLAKATIDRYGVADILVNNAGLGLFSPFLNVDDKLID 109 (252)
T ss_pred ------------------cCCeeEEEEeccCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHH
Confidence 1235668889999876 5555543 57999999996321 22345
Q ss_pred HHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCC
Q psy17528 192 TAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKP 270 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (366)
..+++|+.+...+++.+.+. ....+||++||..++.... + .
T Consensus 110 ~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~---------~-----------------------------~ 151 (252)
T PRK06077 110 KHISTDFKSVIYCSQELAKEMREGGAIVNIASVAGIRPAY---------G-----------------------------L 151 (252)
T ss_pred HHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhccCCCC---------C-----------------------------c
Confidence 67899999988888877643 2235899999987653211 1 1
Q ss_pred chHHHHHHHHHHHHHHhc----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCccc
Q psy17528 271 NSYTLTKATAEDLVRQVG----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVP 346 (366)
Q Consensus 271 ~~Y~~sK~~~E~~l~~~~----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~ 346 (366)
..|+.+|...|.+++.+. .++.+.+++|+.|.++.......+.. .. ...... .......+++
T Consensus 152 ~~Y~~sK~~~~~~~~~l~~~~~~~i~v~~v~Pg~i~t~~~~~~~~~~~-~~-----~~~~~~--------~~~~~~~~~~ 217 (252)
T PRK06077 152 SIYGAMKAAVINLTKYLALELAPKIRVNAIAPGFVKTKLGESLFKVLG-MS-----EKEFAE--------KFTLMGKILD 217 (252)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeCCccChHHHhhhhccc-cc-----HHHHHH--------hcCcCCCCCC
Confidence 689999999999998766 47899999999998764321111000 00 000000 0011236899
Q ss_pred HHHHHHHHHHHHHhhhhcC
Q psy17528 347 GDRVINAMAALAWYFLFSC 365 (366)
Q Consensus 347 vdDva~ai~~~~~~~~~~~ 365 (366)
++|+|++++.++..+..+|
T Consensus 218 ~~dva~~~~~~~~~~~~~g 236 (252)
T PRK06077 218 PEEVAEFVAAILKIESITG 236 (252)
T ss_pred HHHHHHHHHHHhCccccCC
Confidence 9999999999997554433
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.8e-16 Score=145.65 Aligned_cols=210 Identities=18% Similarity=0.190 Sum_probs=142.4
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||+++++.|++.| ++|+++.|+... .+.+.+. +..
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G---~~V~~~~r~~~~---~~~~~~~--------l~~----------------- 53 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAG---AAVMIVGRNPDK---LAAAAEE--------IEA----------------- 53 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC---CeEEEEeCCHHH---HHHHHHH--------HHh-----------------
Confidence 567999999999999999999999998 789999987431 1111111 100
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC--------hhhhH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR--------FDEHI 190 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~--------~~~~~ 190 (366)
.. ...++.++.+|+.+++ .+..+++ .+|+|||+||... ....+
T Consensus 54 ---------------~~-~~~~~~~~~~Dl~~~~------~~~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~ 111 (276)
T PRK05875 54 ---------------LK-GAGAVRYEPADVTDED------QVARAVDAATAWHGRLHGVVHCAGGSETIGPITQIDSDAW 111 (276)
T ss_pred ---------------cc-CCCceEEEEcCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCcccCCCChhhCCHHHH
Confidence 00 0246788899999876 5655554 6899999998532 12345
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 191 RTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
...+++|+.++..+++.+.+. .+..+|+++||..+.....
T Consensus 112 ~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~~~~~------------------------------------- 154 (276)
T PRK05875 112 RRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAASNTHR------------------------------------- 154 (276)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcCCCC-------------------------------------
Confidence 677888999999888765432 2345899999987542211
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
....|+.+|...|.+++.+. .+++++++||+.+.++..... . . ........... ....
T Consensus 155 -~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~Pg~v~t~~~~~~---~---~-~~~~~~~~~~~---------~~~~ 217 (276)
T PRK05875 155 -WFGAYGVTKSAVDHLMKLAADELGPSWVRVNSIRPGLIRTDLVAPI---T---E-SPELSADYRAC---------TPLP 217 (276)
T ss_pred -CCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCccCCcccccc---c---c-CHHHHHHHHcC---------CCCC
Confidence 11689999999999998765 579999999999987643211 0 0 01111111111 1123
Q ss_pred CcccHHHHHHHHHHHHHhhh
Q psy17528 343 DVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~~ 362 (366)
.+++++|++++++.++..+.
T Consensus 218 ~~~~~~dva~~~~~l~~~~~ 237 (276)
T PRK05875 218 RVGEVEDVANLAMFLLSDAA 237 (276)
T ss_pred CCcCHHHHHHHHHHHcCchh
Confidence 46789999999999987654
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-15 Score=140.71 Aligned_cols=203 Identities=14% Similarity=0.125 Sum_probs=141.4
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||.+++++|++.| .+|++++|+... .+++.+.+. .
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g---~~vi~~~r~~~~---~~~~~~~~~--------~----------------- 52 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREG---ASVVVADINAEG---AERVAKQIV--------A----------------- 52 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHHHH--------h-----------------
Confidence 457899999999999999999999998 789999997432 122221110 0
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC----------hhh
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR----------FDE 188 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~----------~~~ 188 (366)
....+.++.+|+++.+ .+..++. .+|+|||+||... ...
T Consensus 53 ------------------~~~~~~~~~~Dl~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~ 108 (250)
T PRK07774 53 ------------------DGGTAIAVQVDVSDPD------SAKAMADATVSAFGGIDYLVNNAAIYGGMKLDLLITVPWD 108 (250)
T ss_pred ------------------cCCcEEEEEcCCCCHH------HHHHHHHHHHHHhCCCCEEEECCCCcCCCCCCChhhCCHH
Confidence 1235678899999876 5555443 5799999999642 123
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcc
Q psy17528 189 HIRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHI 265 (366)
Q Consensus 189 ~~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (366)
.++..+++|+.++..+++++.+. .+.+++|++||..++..
T Consensus 109 ~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~------------------------------------- 151 (250)
T PRK07774 109 YYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTAAWLY------------------------------------- 151 (250)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEecccccCC-------------------------------------
Confidence 45667889999999988877643 23468999999876521
Q ss_pred cCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCc
Q psy17528 266 IGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNI 340 (366)
Q Consensus 266 ~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~ 340 (366)
.+.|+.+|+..|.+++... .++.+++++||.+..+..... . . ..+.....++.+.
T Consensus 152 ----~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~---~---~--~~~~~~~~~~~~~-------- 211 (250)
T PRK07774 152 ----SNFYGLAKVGLNGLTQQLARELGGMNIRVNAIAPGPIDTEATRTV---T---P--KEFVADMVKGIPL-------- 211 (250)
T ss_pred ----ccccHHHHHHHHHHHHHHHHHhCccCeEEEEEecCcccCcccccc---C---C--HHHHHHHHhcCCC--------
Confidence 1679999999999887765 579999999999887654311 0 1 1122223332211
Q ss_pred ccCcccHHHHHHHHHHHHHhh
Q psy17528 341 SMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 341 ~~~~v~vdDva~ai~~~~~~~ 361 (366)
..+..++|++++++.++...
T Consensus 212 -~~~~~~~d~a~~~~~~~~~~ 231 (250)
T PRK07774 212 -SRMGTPEDLVGMCLFLLSDE 231 (250)
T ss_pred -CCCcCHHHHHHHHHHHhChh
Confidence 12457899999999988754
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.6e-16 Score=144.60 Aligned_cols=217 Identities=12% Similarity=0.084 Sum_probs=142.0
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||.+++++|++.| ++|++++|+... ..+.+.+.++ .
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G---~~V~~~~r~~~~--~~~~~~~~l~--------~----------------- 53 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAG---AHVVVNYRQKAP--RANKVVAEIE--------A----------------- 53 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCC---CEEEEEeCCchH--hHHHHHHHHH--------h-----------------
Confidence 557899999999999999999999998 788888886431 1122211111 0
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-hhhhHHHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-FDEHIRTAYNIN 197 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-~~~~~~~~~~~n 197 (366)
...++.++.+|+++++ .+..+++ ++|+|||+|+... ....+...+++|
T Consensus 54 ------------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn 109 (248)
T PRK07806 54 ------------------AGGRASAVGADLTDEE------SVAALMDTAREEFGGLDALVLNASGGMESGMDEDYAMRLN 109 (248)
T ss_pred ------------------cCCceEEEEcCCCCHH------HHHHHHHHHHHhCCCCcEEEECCCCCCCCCCCcceeeEee
Confidence 1245778999999976 5655553 5899999998632 122345567889
Q ss_pred HHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHH
Q psy17528 198 VKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLT 276 (366)
Q Consensus 198 v~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~s 276 (366)
+.++..+++.+.+. ....++|++||........ .+ +.| ....|+.+
T Consensus 110 ~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~--~~---~~~----------------------------~~~~Y~~s 156 (248)
T PRK07806 110 RDAQRNLARAALPLMPAGSRVVFVTSHQAHFIPT--VK---TMP----------------------------EYEPVARS 156 (248)
T ss_pred eHHHHHHHHHHHhhccCCceEEEEeCchhhcCcc--cc---CCc----------------------------cccHHHHH
Confidence 99999999988763 2235899999964321000 00 000 01679999
Q ss_pred HHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHH
Q psy17528 277 KATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVI 351 (366)
Q Consensus 277 K~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva 351 (366)
|...|.+++.+. .++++++++|+.+-++..... ..... ...+. .. ......+++++|+|
T Consensus 157 K~a~e~~~~~l~~~~~~~~i~v~~v~pg~~~~~~~~~~---~~~~~--~~~~~----~~-------~~~~~~~~~~~dva 220 (248)
T PRK07806 157 KRAGEDALRALRPELAEKGIGFVVVSGDMIEGTVTATL---LNRLN--PGAIE----AR-------REAAGKLYTVSEFA 220 (248)
T ss_pred HHHHHHHHHHHHHHhhccCeEEEEeCCccccCchhhhh---hccCC--HHHHH----HH-------HhhhcccCCHHHHH
Confidence 999999998764 689999999887766532110 00000 00000 00 01124799999999
Q ss_pred HHHHHHHHhhhhcC
Q psy17528 352 NAMAALAWYFLFSC 365 (366)
Q Consensus 352 ~ai~~~~~~~~~~~ 365 (366)
++++.+++....+|
T Consensus 221 ~~~~~l~~~~~~~g 234 (248)
T PRK07806 221 AEVARAVTAPVPSG 234 (248)
T ss_pred HHHHHHhhccccCc
Confidence 99999998664444
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-15 Score=143.18 Aligned_cols=158 Identities=13% Similarity=0.194 Sum_probs=122.4
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
++++|+||||+|+||++++++|++.| ++|++++|+.....
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g---~~V~~~~r~~~~~~------------------------------------- 42 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAG---YRVFGTSRNPARAA------------------------------------- 42 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCC---CEEEEEeCChhhcc-------------------------------------
Confidence 35789999999999999999999998 88999999753210
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIRT 192 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~~ 192 (366)
...++.++.+|+.|++ ++.++++ .+|+||||||.... ....+.
T Consensus 43 -----------------~~~~~~~~~~D~~d~~------~~~~~~~~~~~~~g~~d~li~~ag~~~~~~~~~~~~~~~~~ 99 (270)
T PRK06179 43 -----------------PIPGVELLELDVTDDA------SVQAAVDEVIARAGRIDVLVNNAGVGLAGAAEESSIAQAQA 99 (270)
T ss_pred -----------------ccCCCeeEEeecCCHH------HHHHHHHHHHHhCCCCCEEEECCCCCCCcCcccCCHHHHHH
Confidence 1135778999999987 6666665 46999999997431 235677
Q ss_pred HHHHHHHHHHHHHHHH----HhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 193 AYNINVKGTQTILALA----KRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 193 ~~~~nv~~~~~ll~~a----~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
.+++|+.++..+++.+ ++. +.++||++||...+... |
T Consensus 100 ~~~~n~~g~~~~~~~~~~~~~~~-~~~~iv~isS~~~~~~~----------~---------------------------- 140 (270)
T PRK06179 100 LFDTNVFGILRMTRAVLPHMRAQ-GSGRIINISSVLGFLPA----------P---------------------------- 140 (270)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhc-CCceEEEECCccccCCC----------C----------------------------
Confidence 8999999988888875 333 66799999997654221 1
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQ 306 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~ 306 (366)
....|+.+|...+.+++... +|+++++++|+.+.++..
T Consensus 141 ~~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~~~t~~~ 183 (270)
T PRK06179 141 YMALYAASKHAVEGYSESLDHEVRQFGIRVSLVEPAYTKTNFD 183 (270)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeCCCcccccc
Confidence 11679999999998887754 689999999999988754
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-15 Score=146.69 Aligned_cols=210 Identities=15% Similarity=0.085 Sum_probs=144.3
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++|++|||||+|+||.+++++|++.| .+|++..++..... .+.+.+.+.
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l~~~G---~~V~i~~~~~~~~~-~~~~~~~~~------------------------- 102 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFAREG---ADIALNYLPEEEQD-AAEVVQLIQ------------------------- 102 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHHHcC---CEEEEEeCCcchHH-HHHHHHHHH-------------------------
Confidence 4668999999999999999999999998 77877766543211 112221111
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC--------hhhh
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR--------FDEH 189 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~--------~~~~ 189 (366)
....++.++.+|+.+.+ .+.++++ ++|+||||||... ....
T Consensus 103 ------------------~~~~~~~~~~~Dl~~~~------~v~~~~~~~~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~ 158 (300)
T PRK06128 103 ------------------AEGRKAVALPGDLKDEA------FCRQLVERAVKELGGLDILVNIAGKQTAVKDIADITTEQ 158 (300)
T ss_pred ------------------HcCCeEEEEecCCCCHH------HHHHHHHHHHHHhCCCCEEEECCcccCCCCChhhCCHHH
Confidence 11246778899999876 5555443 6899999999632 1245
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 190 IRTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 190 ~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
+...+++|+.++..+++.+.+. ....+||++||..++....
T Consensus 159 ~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~~-------------------------------------- 200 (300)
T PRK06128 159 FDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQPSP-------------------------------------- 200 (300)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCccccCCCC--------------------------------------
Confidence 6789999999999999988653 2235899999987653211
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
....|+.+|...+.+++.+. +|+++++++||.|.++...... .. ...+..... ......
T Consensus 201 ~~~~Y~asK~a~~~~~~~la~el~~~gI~v~~v~PG~i~t~~~~~~~-----~~--~~~~~~~~~---------~~p~~r 264 (300)
T PRK06128 201 TLLDYASTKAAIVAFTKALAKQVAEKGIRVNAVAPGPVWTPLQPSGG-----QP--PEKIPDFGS---------ETPMKR 264 (300)
T ss_pred CchhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEECcCcCCCcccCC-----CC--HHHHHHHhc---------CCCCCC
Confidence 01569999999999987765 6899999999999988542110 00 111111111 112345
Q ss_pred cccHHHHHHHHHHHHHhh
Q psy17528 344 VVPGDRVINAMAALAWYF 361 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~~ 361 (366)
+...+|++.+++.++...
T Consensus 265 ~~~p~dva~~~~~l~s~~ 282 (300)
T PRK06128 265 PGQPVEMAPLYVLLASQE 282 (300)
T ss_pred CcCHHHHHHHHHHHhCcc
Confidence 778999999999887643
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-15 Score=142.01 Aligned_cols=211 Identities=14% Similarity=0.166 Sum_probs=142.8
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||.+++++|++.| .+|++++|+.+.. ++.+ .++.
T Consensus 5 l~~~~ilItGasggiG~~la~~l~~~G---~~v~~~~r~~~~~----~~~~--------~~~~----------------- 52 (258)
T PRK08628 5 LKDKVVIVTGGASGIGAAISLRLAEEG---AIPVIFGRSAPDD----EFAE--------ELRA----------------- 52 (258)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHcC---CcEEEEcCChhhH----HHHH--------HHHh-----------------
Confidence 678999999999999999999999998 7888888875432 1111 1111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC------hhhhHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR------FDEHIRT 192 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~------~~~~~~~ 192 (366)
...++.++.+|+.+.+ .+..+++ .+|+|||+||... ....++.
T Consensus 53 ------------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~ 108 (258)
T PRK08628 53 ------------------LQPRAEFVQVDLTDDA------QCRDAVEQTVAKFGRIDGLVNNAGVNDGVGLEAGREAFVA 108 (258)
T ss_pred ------------------cCCceEEEEccCCCHH------HHHHHHHHHHHhcCCCCEEEECCcccCCCcccCCHHHHHH
Confidence 1246788999999876 5555553 5799999999532 1245667
Q ss_pred HHHHHHHHHHHHHHHHHhc--CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCC
Q psy17528 193 AYNINVKGTQTILALAKRM--KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKP 270 (366)
Q Consensus 193 ~~~~nv~~~~~ll~~a~~~--~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (366)
.+++|+.+...+.+.+.+. ....+|+++||..+.... ...
T Consensus 109 ~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~--------------------------------------~~~ 150 (258)
T PRK08628 109 SLERNLIHYYVMAHYCLPHLKASRGAIVNISSKTALTGQ--------------------------------------GGT 150 (258)
T ss_pred HHhhhhHHHHHHHHHHHHHhhccCcEEEEECCHHhccCC--------------------------------------CCC
Confidence 8889999998888876532 133689999997654211 011
Q ss_pred chHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcc
Q psy17528 271 NSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVV 345 (366)
Q Consensus 271 ~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v 345 (366)
..|+.+|...|.+++... ++++++.++||.|+++.... +...+.............. . . ...++
T Consensus 151 ~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~pg~v~t~~~~~---~~~~~~~~~~~~~~~~~~~----~-~---~~~~~ 219 (258)
T PRK08628 151 SGYAAAKGAQLALTREWAVALAKDGVRVNAVIPAEVMTPLYEN---WIATFDDPEAKLAAITAKI----P-L---GHRMT 219 (258)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCHHHHH---HhhhccCHHHHHHHHHhcC----C-c---cccCC
Confidence 679999999999998765 58999999999999874321 1111111111111111110 1 0 12467
Q ss_pred cHHHHHHHHHHHHHhh
Q psy17528 346 PGDRVINAMAALAWYF 361 (366)
Q Consensus 346 ~vdDva~ai~~~~~~~ 361 (366)
..+|+|++++.++...
T Consensus 220 ~~~dva~~~~~l~~~~ 235 (258)
T PRK08628 220 TAEEIADTAVFLLSER 235 (258)
T ss_pred CHHHHHHHHHHHhChh
Confidence 8899999999988654
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-15 Score=140.09 Aligned_cols=204 Identities=15% Similarity=0.162 Sum_probs=140.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
|++++|+||||+|+||.+++++|++.| ++|+++.|+.... +.+.+. +
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g---~~v~~~~r~~~~~---~~~~~~--------~------------------- 49 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADG---AKVVIYDSNEEAA---EALAAE--------L------------------- 49 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCChhHH---HHHHHH--------H-------------------
Confidence 346899999999999999999999998 6799999975321 111111 1
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~ 191 (366)
.....++.++.+|+.+++ .+.+++. .+|.|||++|.... ...+.
T Consensus 50 ----------------~~~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~ 107 (246)
T PRK05653 50 ----------------RAAGGEARVLVFDVSDEA------AVRALIEAAVEAFGALDILVNNAGITRDALLPRMSEEDWD 107 (246)
T ss_pred ----------------HhcCCceEEEEccCCCHH------HHHHHHHHHHHHhCCCCEEEECCCcCCCCChhhCCHHHHH
Confidence 112356788899999876 5555543 46999999987432 22346
Q ss_pred HHHHHHHHHHHHHHHHHHh---cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKR---MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~---~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
..++.|+.+...+++.+.+ ..+.++||++||....... .
T Consensus 108 ~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~ss~~~~~~~--------------------------------------~ 149 (246)
T PRK05653 108 RVIDVNLTGTFNVVRAALPPMIKARYGRIVNISSVSGVTGN--------------------------------------P 149 (246)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhccCC--------------------------------------C
Confidence 6788999999988887742 1356799999997543211 0
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
....|+.+|...|.+++... .+++++++||+.++++..... .......... .-....
T Consensus 150 ~~~~y~~sk~~~~~~~~~l~~~~~~~~i~~~~i~pg~~~~~~~~~~----------~~~~~~~~~~--------~~~~~~ 211 (246)
T PRK05653 150 GQTNYSAAKAGVIGFTKALALELASRGITVNAVAPGFIDTDMTEGL----------PEEVKAEILK--------EIPLGR 211 (246)
T ss_pred CCcHhHhHHHHHHHHHHHHHHHHhhcCeEEEEEEeCCcCCcchhhh----------hHHHHHHHHh--------cCCCCC
Confidence 12679999998888877754 589999999999999764321 1111111110 011256
Q ss_pred cccHHHHHHHHHHHHHh
Q psy17528 344 VVPGDRVINAMAALAWY 360 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~ 360 (366)
+++.+|+++++..++..
T Consensus 212 ~~~~~dva~~~~~~~~~ 228 (246)
T PRK05653 212 LGQPEEVANAVAFLASD 228 (246)
T ss_pred CcCHHHHHHHHHHHcCc
Confidence 88999999999998864
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.6e-16 Score=146.21 Aligned_cols=211 Identities=11% Similarity=0.090 Sum_probs=137.8
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
|++++++||||+|+||.+++++|++.| ++|++++|+... +.+.
T Consensus 1 ~~~k~vlItGasggiG~~la~~l~~~G---~~V~~~~r~~~~------l~~~---------------------------- 43 (273)
T PRK06182 1 MQKKVALVTGASSGIGKATARRLAAQG---YTVYGAARRVDK------MEDL---------------------------- 43 (273)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHHH------HHHH----------------------------
Confidence 357899999999999999999999998 889999997421 1111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~ 191 (366)
. ...+.++.+|+++.+ .+..+++ ++|+|||+||.... ...++
T Consensus 44 ---------------~---~~~~~~~~~Dv~~~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~ 99 (273)
T PRK06182 44 ---------------A---SLGVHPLSLDVTDEA------SIKAAVDTIIAEEGRIDVLVNNAGYGSYGAIEDVPIDEAR 99 (273)
T ss_pred ---------------H---hCCCeEEEeeCCCHH------HHHHHHHHHHHhcCCCCEEEECCCcCCCCchhhCCHHHHH
Confidence 0 124678899999976 6666554 68999999997532 23567
Q ss_pred HHHHHHHHHHHHHHH----HHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 192 TAYNINVKGTQTILA----LAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~----~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
..+++|+.+...+++ .+++. +..++|++||....... |
T Consensus 100 ~~~~~n~~~~~~~~~~~l~~~~~~-~~g~iv~isS~~~~~~~----------~--------------------------- 141 (273)
T PRK06182 100 RQFEVNLFGAARLTQLVLPHMRAQ-RSGRIINISSMGGKIYT----------P--------------------------- 141 (273)
T ss_pred HHHhHHhHHHHHHHHHHHHHHHhc-CCCEEEEEcchhhcCCC----------C---------------------------
Confidence 788999988555444 44443 55789999997543111 0
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCcccccc--ch-HHHHHHHHhcCcceeecCCCC
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGF--NG-VMALALGAGTGLIRVVQTDPN 339 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~--~~-~~~~~~~~~~g~~~~l~~~~~ 339 (366)
....|+.+|...+.+.+... .++++++++||.|.++............ .. ......... .. .....
T Consensus 142 -~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~ 215 (273)
T PRK06182 142 -LGAWYHATKFALEGFSDALRLEVAPFGIDVVVIEPGGIKTEWGDIAADHLLKTSGNGAYAEQAQAVA-AS----MRSTY 215 (273)
T ss_pred -CccHhHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCcccccchhhhhhhcccccccchHHHHHHHH-HH----HHHhh
Confidence 11569999999999875443 6899999999999887532110000000 00 000000000 00 00111
Q ss_pred cccCcccHHHHHHHHHHHHHhh
Q psy17528 340 ISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 340 ~~~~~v~vdDva~ai~~~~~~~ 361 (366)
....+...+|+|++++.++...
T Consensus 216 ~~~~~~~~~~vA~~i~~~~~~~ 237 (273)
T PRK06182 216 GSGRLSDPSVIADAISKAVTAR 237 (273)
T ss_pred ccccCCCHHHHHHHHHHHHhCC
Confidence 2345789999999999998753
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.8e-15 Score=139.21 Aligned_cols=206 Identities=11% Similarity=0.116 Sum_probs=139.9
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||++++++|++.| .+|+++.+.... ..+.+.+ .+..
T Consensus 4 ~~~~~~lItG~s~~iG~~la~~l~~~g---~~v~~~~~~~~~--~~~~~~~--------~l~~----------------- 53 (247)
T PRK12935 4 LNGKVAIVTGGAKGIGKAITVALAQEG---AKVVINYNSSKE--AAENLVN--------ELGK----------------- 53 (247)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcC---CEEEEEcCCcHH--HHHHHHH--------HHHh-----------------
Confidence 457999999999999999999999998 677765543211 1111111 1111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~ 191 (366)
...++.++.+|+.+.+ .+..+++ .+|+|||+||.... ...++
T Consensus 54 ------------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~ 109 (247)
T PRK12935 54 ------------------EGHDVYAVQADVSKVE------DANRLVEEAVNHFGKVDILVNNAGITRDRTFKKLNREDWE 109 (247)
T ss_pred ------------------cCCeEEEEECCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHH
Confidence 1246888999999976 5666554 37999999997431 24567
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
+.+++|+.++..+++.+.+. ....++|++||.++..... +
T Consensus 110 ~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~---------~---------------------------- 152 (247)
T PRK12935 110 RVIDVNLSSVFNTTSAVLPYITEAEEGRIISISSIIGQAGGF---------G---------------------------- 152 (247)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchhhcCCCC---------C----------------------------
Confidence 78899999999988887642 2346899999976542210 0
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
...|+.+|...+.+.+... .++++++++|+.|.++..... . .........+ ...++
T Consensus 153 -~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~-------~--~~~~~~~~~~---------~~~~~ 213 (247)
T PRK12935 153 -QTNYSAAKAGMLGFTKSLALELAKTNVTVNAICPGFIDTEMVAEV-------P--EEVRQKIVAK---------IPKKR 213 (247)
T ss_pred -CcchHHHHHHHHHHHHHHHHHHHHcCcEEEEEEeCCCcChhhhhc-------c--HHHHHHHHHh---------CCCCC
Confidence 1679999998887776554 589999999999986532111 0 0111111111 12356
Q ss_pred cccHHHHHHHHHHHHHhh
Q psy17528 344 VVPGDRVINAMAALAWYF 361 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~~ 361 (366)
+++++|++++++.+++..
T Consensus 214 ~~~~edva~~~~~~~~~~ 231 (247)
T PRK12935 214 FGQADEIAKGVVYLCRDG 231 (247)
T ss_pred CcCHHHHHHHHHHHcCcc
Confidence 899999999999988653
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.3e-15 Score=140.10 Aligned_cols=205 Identities=15% Similarity=0.135 Sum_probs=141.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
++++++|||||+|+||++++++|++.| ++|++++|+...
T Consensus 6 ~~~k~vlItGas~~iG~~la~~l~~~G---~~v~~~~~~~~~-------------------------------------- 44 (252)
T PRK08220 6 FSGKTVWVTGAAQGIGYAVALAFVEAG---AKVIGFDQAFLT-------------------------------------- 44 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEecchhh--------------------------------------
Confidence 567999999999999999999999998 889999886400
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~ 191 (366)
. ...++.++.+|+.+.+ .+..+++ .+|+|||++|.... ...+.
T Consensus 45 ---------------~--~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~ 101 (252)
T PRK08220 45 ---------------Q--EDYPFATFVLDVSDAA------AVAQVCQRLLAETGPLDVLVNAAGILRMGATDSLSDEDWQ 101 (252)
T ss_pred ---------------h--cCCceEEEEecCCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHH
Confidence 0 1246788999999876 5665554 47999999997531 23567
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
..+++|+.+...+++.+.+. .+..++|++||....... .
T Consensus 102 ~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~ss~~~~~~~--------------------------------------~ 143 (252)
T PRK08220 102 QTFAVNAGGAFNLFRAVMPQFRRQRSGAIVTVGSNAAHVPR--------------------------------------I 143 (252)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECCchhccCC--------------------------------------C
Confidence 78899999999988876431 244689999997543111 0
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccc-hHHHHHHHHhcCcceeecCCCCccc
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFN-GVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
....|+.+|...+.+++... .++++++++|+.++++............. .......... ......
T Consensus 144 ~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 214 (252)
T PRK08220 144 GMAAYGASKAALTSLAKCVGLELAPYGVRCNVVSPGSTDTDMQRTLWVDEDGEQQVIAGFPEQFK---------LGIPLG 214 (252)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhhHhCeEEEEEecCcCcchhhhhhccchhhhhhhhhhHHHHHh---------hcCCCc
Confidence 11679999999999887665 68999999999999985421100000000 0000000111 112235
Q ss_pred CcccHHHHHHHHHHHHHhh
Q psy17528 343 DVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~ 361 (366)
.+++++|+|++++.++...
T Consensus 215 ~~~~~~dva~~~~~l~~~~ 233 (252)
T PRK08220 215 KIARPQEIANAVLFLASDL 233 (252)
T ss_pred ccCCHHHHHHHHHHHhcch
Confidence 6899999999999988654
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-15 Score=138.96 Aligned_cols=205 Identities=13% Similarity=0.095 Sum_probs=140.3
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCc-CHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGST-SITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
+++++++||||+|+||+++++.|++.| ++|+++.|..... ...+.+.+. +
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g---~~v~~~~~~~~~~~~~~~~~~~~--------~------------------ 54 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADG---ADVIVLDIHPMRGRAEADAVAAG--------I------------------ 54 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCC---CeEEEEcCcccccHHHHHHHHHH--------H------------------
Confidence 457899999999999999999999998 7888877753221 111111111 1
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH-------hCcCEEEEcCcccC-------hhhhH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI-------SQTTIIFHIAATVR-------FDEHI 190 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~-------~~~d~Vih~a~~~~-------~~~~~ 190 (366)
.....++.++.+|+.+.+ .+..++ .++|.|||++|... ....+
T Consensus 55 -----------------~~~~~~~~~~~~Dl~~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~ 111 (249)
T PRK12827 55 -----------------EAAGGKALGLAFDVRDFA------ATRAALDAGVEEFGRLDILVNNAGIATDAAFAELSIEEW 111 (249)
T ss_pred -----------------HhcCCcEEEEEccCCCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHH
Confidence 111356889999999976 555544 25899999999753 12345
Q ss_pred HHHHHHHHHHHHHHHHHHH-h---cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 191 RTAYNINVKGTQTILALAK-R---MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~-~---~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
...+++|+.++..+++++. . ..+.+++|++||...+....
T Consensus 112 ~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~------------------------------------ 155 (249)
T PRK12827 112 DDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASVAGVRGNR------------------------------------ 155 (249)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCchhcCCCC------------------------------------
Confidence 6788999999999999887 1 12557899999976542211
Q ss_pred CCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcc
Q psy17528 267 GGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNIS 341 (366)
Q Consensus 267 ~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~ 341 (366)
....|+.+|...+.+++... .+++++++|||.++++..... +. ........ ..
T Consensus 156 --~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~------~~-----~~~~~~~~---------~~ 213 (249)
T PRK12827 156 --GQVNYAASKAGLIGLTKTLANELAPRGITVNAVAPGAINTPMADNA------AP-----TEHLLNPV---------PV 213 (249)
T ss_pred --CCchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEEECCcCCCccccc------ch-----HHHHHhhC---------CC
Confidence 01679999999888877665 489999999999999754321 00 01111111 11
Q ss_pred cCcccHHHHHHHHHHHHHh
Q psy17528 342 MDVVPGDRVINAMAALAWY 360 (366)
Q Consensus 342 ~~~v~vdDva~ai~~~~~~ 360 (366)
..+.+.+|++++++.++..
T Consensus 214 ~~~~~~~~va~~~~~l~~~ 232 (249)
T PRK12827 214 QRLGEPDEVAALVAFLVSD 232 (249)
T ss_pred cCCcCHHHHHHHHHHHcCc
Confidence 2356889999999988754
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-15 Score=142.10 Aligned_cols=207 Identities=14% Similarity=0.106 Sum_probs=142.7
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++||||||+|+||++++++|++.| ++|++++|+.... +.+.+. +..
T Consensus 8 ~~~k~vlItGa~g~iG~~ia~~l~~~G---~~V~~~~r~~~~~---~~~~~~--------i~~----------------- 56 (255)
T PRK07523 8 LTGRRALVTGSSQGIGYALAEGLAQAG---AEVILNGRDPAKL---AAAAES--------LKG----------------- 56 (255)
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHcC---CEEEEEeCCHHHH---HHHHHH--------HHh-----------------
Confidence 568999999999999999999999998 7899999874311 111111 100
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
...++.++.+|+.+.+ .+..+++ .+|+|||++|... ....++
T Consensus 57 ------------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~ 112 (255)
T PRK07523 57 ------------------QGLSAHALAFDVTDHD------AVRAAIDAFEAEIGPIDILVNNAGMQFRTPLEDFPADAFE 112 (255)
T ss_pred ------------------cCceEEEEEccCCCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHH
Confidence 1235778899999976 6666554 4799999999743 123456
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
..+++|+.++..+++.+.+. .+.+++|++||....... +
T Consensus 113 ~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~--------------------------------------~ 154 (255)
T PRK07523 113 RLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQSALAR--------------------------------------P 154 (255)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccchhccCC--------------------------------------C
Confidence 78889999999998877642 245789999997543111 0
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
....|+.+|...|.+++.+. +|++++++||+.+.++...... . . ..+....... .....
T Consensus 155 ~~~~y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~---~-~---~~~~~~~~~~---------~~~~~ 218 (255)
T PRK07523 155 GIAPYTATKGAVGNLTKGMATDWAKHGLQCNAIAPGYFDTPLNAALV---A-D---PEFSAWLEKR---------TPAGR 218 (255)
T ss_pred CCccHHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcccCchhhhhc---c-C---HHHHHHHHhc---------CCCCC
Confidence 11679999999999987765 6899999999999987542110 0 0 0011111111 11244
Q ss_pred cccHHHHHHHHHHHHHhh
Q psy17528 344 VVPGDRVINAMAALAWYF 361 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~~ 361 (366)
+..++|+|++++.++...
T Consensus 219 ~~~~~dva~~~~~l~~~~ 236 (255)
T PRK07523 219 WGKVEELVGACVFLASDA 236 (255)
T ss_pred CcCHHHHHHHHHHHcCch
Confidence 778999999999988653
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-15 Score=141.37 Aligned_cols=208 Identities=16% Similarity=0.129 Sum_probs=139.3
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEE-EEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIIL-LIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~-~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
|++++++||||+|+||++++++|++.| ++|++ ..|+... .+.+.+. +..
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g---~~v~~~~~r~~~~---~~~~~~~--------~~~---------------- 51 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEG---YDIAVNYARSRKA---AEETAEE--------IEA---------------- 51 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEcCCCHHH---HHHHHHH--------HHh----------------
Confidence 457899999999999999999999998 67665 4565321 1111111 111
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHI 190 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~ 190 (366)
...++.++.+|+.+++ ++..+++ .+|+|||+||.... ....
T Consensus 52 -------------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~ 106 (250)
T PRK08063 52 -------------------LGRKALAVKANVGDVE------KIKEMFAQIDEEFGRLDVFVNNAASGVLRPAMELEESHW 106 (250)
T ss_pred -------------------cCCeEEEEEcCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHH
Confidence 1246788999999986 5665554 57999999986421 2234
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 191 RTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
...+++|+.++..+++.+.+. .+.++||++||........
T Consensus 107 ~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~------------------------------------- 149 (250)
T PRK08063 107 DWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSSLGSIRYLE------------------------------------- 149 (250)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhccCCC-------------------------------------
Confidence 557788999988888876542 2456999999965432110
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
....|+.+|...|.+++... .++++++++|+.+.++.....+.. ..+....... ....
T Consensus 150 -~~~~y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~t~~~~~~~~~-------~~~~~~~~~~---------~~~~ 212 (250)
T PRK08063 150 -NYTTVGVSKAALEALTRYLAVELAPKGIAVNAVSGGAVDTDALKHFPNR-------EELLEDARAK---------TPAG 212 (250)
T ss_pred -CccHHHHHHHHHHHHHHHHHHHHhHhCeEEEeEecCcccCchhhhccCc-------hHHHHHHhcC---------CCCC
Confidence 01679999999999987765 689999999999987653221110 1111111111 1123
Q ss_pred CcccHHHHHHHHHHHHHhhh
Q psy17528 343 DVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~~ 362 (366)
.++..+|+|++++.++..+.
T Consensus 213 ~~~~~~dva~~~~~~~~~~~ 232 (250)
T PRK08063 213 RMVEPEDVANAVLFLCSPEA 232 (250)
T ss_pred CCcCHHHHHHHHHHHcCchh
Confidence 47899999999999887653
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-15 Score=142.50 Aligned_cols=166 Identities=11% Similarity=0.120 Sum_probs=121.8
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
..+++++|+||||+|+||++++++|++.| .+|++++|+.... +.+.+
T Consensus 6 ~~~~~k~vlItG~sg~IG~~~a~~l~~~g---~~v~~~~~~~~~~---~~~~~--------------------------- 52 (255)
T PRK05717 6 PGHNGRVALVTGAARGIGLGIAAWLIAEG---WQVVLADLDRERG---SKVAK--------------------------- 52 (255)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHcC---CEEEEEcCCHHHH---HHHHH---------------------------
Confidence 34568999999999999999999999998 7898888864311 11100
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh---------h
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF---------D 187 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~---------~ 187 (366)
.....+.++.+|+.+.+ ++..+++ .+|+|||+||.... .
T Consensus 53 -------------------~~~~~~~~~~~Dl~~~~------~~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~ 107 (255)
T PRK05717 53 -------------------ALGENAWFIAMDVADEA------QVAAGVAEVLGQFGRLDALVCNAAIADPHNTTLESLSL 107 (255)
T ss_pred -------------------HcCCceEEEEccCCCHH------HHHHHHHHHHHHhCCCCEEEECCCcccCCCCChhhCCH
Confidence 01235778999999976 5544332 47999999997531 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhc--CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcc
Q psy17528 188 EHIRTAYNINVKGTQTILALAKRM--KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHI 265 (366)
Q Consensus 188 ~~~~~~~~~nv~~~~~ll~~a~~~--~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (366)
..+...+++|+.++..+++++.+. ....++|++||...+....
T Consensus 108 ~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~~~~~----------------------------------- 152 (255)
T PRK05717 108 AHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRARQSEP----------------------------------- 152 (255)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhcCCCC-----------------------------------
Confidence 345678899999999999988642 1235899999975542210
Q ss_pred cCCCCchHHHHHHHHHHHHHHhc----CCCCEEEEecCccccCC
Q psy17528 266 IGGKPNSYTLTKATAEDLVRQVG----HELPICVLRPSIVFPTL 305 (366)
Q Consensus 266 ~~~~~~~Y~~sK~~~E~~l~~~~----~gl~~~ilRp~~v~G~~ 305 (366)
....|+.+|...+.+++.+. .++++++++|+.+.++.
T Consensus 153 ---~~~~Y~~sKaa~~~~~~~la~~~~~~i~v~~i~Pg~i~t~~ 193 (255)
T PRK05717 153 ---DTEAYAASKGGLLALTHALAISLGPEIRVNAVSPGWIDARD 193 (255)
T ss_pred ---CCcchHHHHHHHHHHHHHHHHHhcCCCEEEEEecccCcCCc
Confidence 11679999999999888765 46899999999999874
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-15 Score=141.22 Aligned_cols=208 Identities=15% Similarity=0.135 Sum_probs=141.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||.+++++|++.| ++|++++|+.... +.+.+. +
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G---~~V~~~~r~~~~~---~~~~~~--------~------------------- 49 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEG---ARVVVTDRNEEAA---ERVAAE--------I------------------- 49 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHHHH---HHHHHH--------H-------------------
Confidence 467899999999999999999999998 7899999985321 111110 0
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh--------hhhH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF--------DEHI 190 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~--------~~~~ 190 (366)
.. ...+.++.+|+.+.+ .+..+++ .+|+|||++|.... ...+
T Consensus 50 ----------------~~-~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~ 106 (251)
T PRK07231 50 ----------------LA-GGRAIAVAADVSDEA------DVEAAVAAALERFGSVDILVNNAGTTHRNGPLLDVDEAEF 106 (251)
T ss_pred ----------------hc-CCeEEEEECCCCCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCChhhCCHHHH
Confidence 00 245788999999987 6665553 57999999996421 2345
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 191 RTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
...+++|+.++..+++.+.+. .+.++||++||..++....
T Consensus 107 ~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~------------------------------------- 149 (251)
T PRK07231 107 DRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVASTAGLRPRP------------------------------------- 149 (251)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcCCCC-------------------------------------
Confidence 678899999887777765531 2567899999987653221
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
....|+.+|...+.+++... .+++++.++||.+.++....... .. .......... .....
T Consensus 150 -~~~~y~~sk~~~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~---~~--~~~~~~~~~~---------~~~~~ 214 (251)
T PRK07231 150 -GLGWYNASKGAVITLTKALAAELGPDKIRVNAVAPVVVETGLLEAFMG---EP--TPENRAKFLA---------TIPLG 214 (251)
T ss_pred -CchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEECccCCCcchhhhc---cc--ChHHHHHHhc---------CCCCC
Confidence 01679999999888887665 48999999999997654321100 00 0011111111 11234
Q ss_pred CcccHHHHHHHHHHHHHhh
Q psy17528 343 DVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~ 361 (366)
.+++++|+|.+++.++...
T Consensus 215 ~~~~~~dva~~~~~l~~~~ 233 (251)
T PRK07231 215 RLGTPEDIANAALFLASDE 233 (251)
T ss_pred CCcCHHHHHHHHHHHhCcc
Confidence 5789999999999988654
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.4e-15 Score=139.58 Aligned_cols=211 Identities=12% Similarity=0.112 Sum_probs=141.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
++++++|||||+|+||++++++|++.| ++|++++|+... .+++.+.+ ..
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g---~~v~~~~r~~~~---~~~~~~~~--------~~----------------- 49 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEG---AKVAVFDLNREA---AEKVAADI--------RA----------------- 49 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEecCCHHH---HHHHHHHH--------Hh-----------------
Confidence 468999999999999999999999998 789999887532 12221111 00
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
...++.++.+|+.+.+ .+..++. .+|+|||++|... ....++
T Consensus 50 ------------------~~~~~~~~~~d~~~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~ 105 (250)
T TIGR03206 50 ------------------KGGNAQAFACDITDRD------SVDTAVAAAEQALGPVDVLVNNAGWDKFGPFTKTEPPLWE 105 (250)
T ss_pred ------------------cCCcEEEEEcCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHH
Confidence 1246888999999876 5655553 5899999998632 123346
Q ss_pred HHHHHHHHHHHHHHHHHHh---cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKR---MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~---~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
..+++|+.++..+++.+.+ ..+.++++++||..++....
T Consensus 106 ~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss~~~~~~~~-------------------------------------- 147 (250)
T TIGR03206 106 RLIAINLTGALHMHHAVLPGMVERGAGRIVNIASDAARVGSS-------------------------------------- 147 (250)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECchhhccCCC--------------------------------------
Confidence 6789999999988877642 12567899999986653321
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
....|+.+|...+.+++.+. .+++++++||+.++++.......+ ......+........ ....
T Consensus 148 ~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---------~~~~ 215 (250)
T TIGR03206 148 GEAVYAACKGGLVAFSKTMAREHARHGITVNVVCPGPTDTALLDDICGG---AENPEKLREAFTRAI---------PLGR 215 (250)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEecCcccchhHHhhhhc---cCChHHHHHHHHhcC---------CccC
Confidence 11679999988888887665 489999999999998743211110 000111111111111 1123
Q ss_pred cccHHHHHHHHHHHHHhh
Q psy17528 344 VVPGDRVINAMAALAWYF 361 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~~ 361 (366)
+...+|+|+++..++...
T Consensus 216 ~~~~~dva~~~~~l~~~~ 233 (250)
T TIGR03206 216 LGQPDDLPGAILFFSSDD 233 (250)
T ss_pred CcCHHHHHHHHHHHcCcc
Confidence 566799999999887654
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.1e-15 Score=137.41 Aligned_cols=205 Identities=17% Similarity=0.137 Sum_probs=141.8
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCcc-EEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIR-KIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~-~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
+++++|+||||+|+||++++++|++.| . +|++++|+.....
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G---~~~V~~~~r~~~~~~----------------------------------- 45 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARG---AAKVYAAARDPESVT----------------------------------- 45 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---cccEEEEecChhhhh-----------------------------------
Confidence 457899999999999999999999998 5 8999999753210
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh---CcCEEEEcCcccC--------hhhhHHHH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS---QTTIIFHIAATVR--------FDEHIRTA 193 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~---~~d~Vih~a~~~~--------~~~~~~~~ 193 (366)
. ....+.++.+|+.+.+ .+.++++ .+|+|||++|... ....+...
T Consensus 46 ----------------~--~~~~~~~~~~D~~~~~------~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~ 101 (238)
T PRK08264 46 ----------------D--LGPRVVPLQLDVTDPA------SVAAAAEAASDVTILVNNAGIFRTGSLLLEGDEDALRAE 101 (238)
T ss_pred ----------------h--cCCceEEEEecCCCHH------HHHHHHHhcCCCCEEEECCCcCCCCCccccCCHHHHHHH
Confidence 0 1246788999999977 6666665 5799999999721 12445678
Q ss_pred HHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCC
Q psy17528 194 YNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKP 270 (366)
Q Consensus 194 ~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (366)
+++|+.++..+++++.+. .+..+|+++||...+.... ..
T Consensus 102 ~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~~~--------------------------------------~~ 143 (238)
T PRK08264 102 METNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSWVNFP--------------------------------------NL 143 (238)
T ss_pred HHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhccCCC--------------------------------------Cc
Confidence 889999999988876531 2456899999976542211 12
Q ss_pred chHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcc
Q psy17528 271 NSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVV 345 (366)
Q Consensus 271 ~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v 345 (366)
..|+.+|...|.+.+.+. .+++++++||+.+.++..............+...+...+.. ..+.+
T Consensus 144 ~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~v~pg~v~t~~~~~~~~~~~~~~~~a~~~~~~~~~-----------~~~~i 212 (238)
T PRK08264 144 GTYSASKAAAWSLTQALRAELAPQGTRVLGVHPGPIDTDMAAGLDAPKASPADVARQILDALEA-----------GDEEV 212 (238)
T ss_pred hHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeCCcccccccccCCcCCCCHHHHHHHHHHHHhC-----------CCCeE
Confidence 679999999998887765 48999999999998774322111100001112222222211 13577
Q ss_pred cHHHHHHHHHHHHHhh
Q psy17528 346 PGDRVINAMAALAWYF 361 (366)
Q Consensus 346 ~vdDva~ai~~~~~~~ 361 (366)
+++|+++.+..++...
T Consensus 213 ~~~~~~~~~~~~~~~~ 228 (238)
T PRK08264 213 LPDEMARQVKAALSAD 228 (238)
T ss_pred eccHHHHHHHHHhhcC
Confidence 8889999998877654
|
|
| >COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.9e-16 Score=144.87 Aligned_cols=231 Identities=17% Similarity=0.103 Sum_probs=171.7
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+|+.||||-||+-|++|++.|++.| +.|+.+.|..+.-. ..++ +++++
T Consensus 2 ~K~ALITGITGQDGsYLa~lLLekG---Y~VhGi~Rrss~~n-~~ri-~L~~~--------------------------- 49 (345)
T COG1089 2 GKVALITGITGQDGSYLAELLLEKG---YEVHGIKRRSSSFN-TPRI-HLYED--------------------------- 49 (345)
T ss_pred CceEEEecccCCchHHHHHHHHhcC---cEEEEEeeccccCC-cccc-eeccc---------------------------
Confidence 6899999999999999999999999 78888888754321 1111 11111
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccChhh---hHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRFDE---HIRTAYNINVKGTQ 202 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~~~---~~~~~~~~nv~~~~ 202 (366)
.-....++.++.|||+|.. .+..+++ +.|-|+|+|+.+.+.. .+....+++..|+.
T Consensus 50 -------------~~~~~~~l~l~~gDLtD~~------~l~r~l~~v~PdEIYNLaAQS~V~vSFe~P~~T~~~~~iGtl 110 (345)
T COG1089 50 -------------PHLNDPRLHLHYGDLTDSS------NLLRILEEVQPDEIYNLAAQSHVGVSFEQPEYTADVDAIGTL 110 (345)
T ss_pred -------------cccCCceeEEEeccccchH------HHHHHHHhcCchhheeccccccccccccCcceeeeechhHHH
Confidence 1112356889999999987 7888776 6799999999865432 34456678899999
Q ss_pred HHHHHHHhcCC-CcEEEEeeCcceecC--ccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHH
Q psy17528 203 TILALAKRMKG-LKSFVHVSTAYCNCD--RKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKAT 279 (366)
Q Consensus 203 ~ll~~a~~~~~-~~~~v~iSS~~~~~~--~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~ 279 (366)
+++++.+-.+. -.+|...||+-.||. ..|+.|+.+..|. ++|+.+|+.
T Consensus 111 rlLEaiR~~~~~~~rfYQAStSE~fG~v~~~pq~E~TPFyPr-----------------------------SPYAvAKlY 161 (345)
T COG1089 111 RLLEAIRILGEKKTRFYQASTSELYGLVQEIPQKETTPFYPR-----------------------------SPYAVAKLY 161 (345)
T ss_pred HHHHHHHHhCCcccEEEecccHHhhcCcccCccccCCCCCCC-----------------------------CHHHHHHHH
Confidence 99999987633 468999999977764 4467777666554 899999999
Q ss_pred HHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceee-cCCCCcccCcccHHHHHHHHHH
Q psy17528 280 AEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVV-QTDPNISMDVVPGDRVINAMAA 356 (366)
Q Consensus 280 ~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l-~~~~~~~~~~v~vdDva~ai~~ 356 (366)
+..+...+. +|+.+|.=..++-=+|.... .|. ...+...+.++..|....+ .++-+..+||-|..|.+++|..
T Consensus 162 a~W~tvNYResYgl~AcnGILFNHESP~Rge--~FV--TRKIt~ava~Ik~G~q~~l~lGNldAkRDWG~A~DYVe~mwl 237 (345)
T COG1089 162 AYWITVNYRESYGLFACNGILFNHESPLRGE--TFV--TRKITRAVARIKLGLQDKLYLGNLDAKRDWGHAKDYVEAMWL 237 (345)
T ss_pred HHheeeehHhhcCceeecceeecCCCCCCcc--cee--hHHHHHHHHHHHccccceEEeccccccccccchHHHHHHHHH
Confidence 999888877 78888887777776665431 111 1234555666667776654 4677899999999999999999
Q ss_pred HHHhhh
Q psy17528 357 LAWYFL 362 (366)
Q Consensus 357 ~~~~~~ 362 (366)
++++..
T Consensus 238 mLQq~~ 243 (345)
T COG1089 238 MLQQEE 243 (345)
T ss_pred HHccCC
Confidence 988764
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-15 Score=142.07 Aligned_cols=212 Identities=12% Similarity=0.100 Sum_probs=139.5
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.++++++|||||+|+||++++++|+++| ++|++++|+... .+.+.+.
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g---~~V~~~~r~~~~---~~~~~~~--------------------------- 54 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAEAG---ARVHVCDVSEAA---LAATAAR--------------------------- 54 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHH---------------------------
Confidence 3578999999999999999999999998 789999997431 1222111
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH-------hCcCEEEEcCccc-C-------hhhh
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI-------SQTTIIFHIAATV-R-------FDEH 189 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~-------~~~d~Vih~a~~~-~-------~~~~ 189 (366)
.+. .++.++.+|+.+.+ .+..++ .++|+|||++|.. . ....
T Consensus 55 ----------------~~~--~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~ 110 (264)
T PRK12829 55 ----------------LPG--AKVTATVADVADPA------QVERVFDTAVERFGGLDVLVNNAGIAGPTGGIDEITPEQ 110 (264)
T ss_pred ----------------Hhc--CceEEEEccCCCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCCcccCCHHH
Confidence 110 15788999999876 555444 3689999999975 1 1234
Q ss_pred HHHHHHHHHHHHHHHHHHHHh---cCCC-cEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcc
Q psy17528 190 IRTAYNINVKGTQTILALAKR---MKGL-KSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHI 265 (366)
Q Consensus 190 ~~~~~~~nv~~~~~ll~~a~~---~~~~-~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (366)
+...++.|+.++..+++.+.+ ..+. ++++++||........
T Consensus 111 ~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~~~~~~~----------------------------------- 155 (264)
T PRK12829 111 WEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVAGRLGYP----------------------------------- 155 (264)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEecccccccCCC-----------------------------------
Confidence 577889999999988886632 1233 5688888754321110
Q ss_pred cCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccc-cc-hHHHHHHHHhcCcceeecCCC
Q psy17528 266 IGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKG-FN-GVMALALGAGTGLIRVVQTDP 338 (366)
Q Consensus 266 ~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~-~~-~~~~~~~~~~~g~~~~l~~~~ 338 (366)
....|+.+|...|.+++... .+++++++||+.++|+........... .. ....+...... .
T Consensus 156 ---~~~~y~~~K~a~~~~~~~l~~~~~~~~i~~~~l~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 223 (264)
T PRK12829 156 ---GRTPYAASKWAVVGLVKSLAIELGPLGIRVNAILPGIVRGPRMRRVIEARAQQLGIGLDEMEQEYLE---------K 223 (264)
T ss_pred ---CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcCChHHHHHhhhhhhccCCChhHHHHHHHh---------c
Confidence 01569999999999987765 489999999999999864321000000 00 00000001110 1
Q ss_pred CcccCcccHHHHHHHHHHHHHh
Q psy17528 339 NISMDVVPGDRVINAMAALAWY 360 (366)
Q Consensus 339 ~~~~~~v~vdDva~ai~~~~~~ 360 (366)
.....+++++|+++++..++..
T Consensus 224 ~~~~~~~~~~d~a~~~~~l~~~ 245 (264)
T PRK12829 224 ISLGRMVEPEDIAATALFLASP 245 (264)
T ss_pred CCCCCCCCHHHHHHHHHHHcCc
Confidence 1234589999999999888754
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.2e-15 Score=136.44 Aligned_cols=198 Identities=17% Similarity=0.180 Sum_probs=139.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||.+++++|++.| .+|++++|+... .+.+.+. +.
T Consensus 5 ~~~~~vlVtG~sg~iG~~l~~~L~~~G---~~Vi~~~r~~~~---~~~~~~~--------~~------------------ 52 (239)
T PRK07666 5 LQGKNALITGAGRGIGRAVAIALAKEG---VNVGLLARTEEN---LKAVAEE--------VE------------------ 52 (239)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHH--------HH------------------
Confidence 457899999999999999999999998 789999997532 1111111 10
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~ 191 (366)
....++.++.+|+.+.+ .+..+++ ++|+|||++|.... ..++.
T Consensus 53 -----------------~~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~ 109 (239)
T PRK07666 53 -----------------AYGVKVVIATADVSDYE------EVTAAIEQLKNELGSIDILINNAGISKFGKFLELDPAEWE 109 (239)
T ss_pred -----------------HhCCeEEEEECCCCCHH------HHHHHHHHHHHHcCCccEEEEcCccccCCCcccCCHHHHH
Confidence 01246888999999876 5665554 68999999986431 23456
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
+.+++|+.++..+++.+... .+.+++|++||...+....
T Consensus 110 ~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~~-------------------------------------- 151 (239)
T PRK07666 110 KIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTAGQKGAA-------------------------------------- 151 (239)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchhhccCCC--------------------------------------
Confidence 78899999998888876531 2557899999976542211
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
....|+.+|...+.+++.+. .+++++++|||.+.++...... .. ... ...
T Consensus 152 ~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~v~pg~v~t~~~~~~~----------------~~------~~~---~~~ 206 (239)
T PRK07666 152 VTSAYSASKFGVLGLTESLMQEVRKHNIRVTALTPSTVATDMAVDLG----------------LT------DGN---PDK 206 (239)
T ss_pred CCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccCcchhhcc----------------cc------ccC---CCC
Confidence 11679999998888876654 5899999999999876432100 00 001 123
Q ss_pred cccHHHHHHHHHHHHHhh
Q psy17528 344 VVPGDRVINAMAALAWYF 361 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~~ 361 (366)
++..+|+|++++.++..+
T Consensus 207 ~~~~~~~a~~~~~~l~~~ 224 (239)
T PRK07666 207 VMQPEDLAEFIVAQLKLN 224 (239)
T ss_pred CCCHHHHHHHHHHHHhCC
Confidence 578899999999988764
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.4e-15 Score=139.43 Aligned_cols=207 Identities=14% Similarity=0.117 Sum_probs=142.3
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++++++||||+|+||++++++|++.| .+|+++.|+.... +.+.+. +..
T Consensus 4 ~~~~~~vlItGa~g~iG~~la~~l~~~G---~~v~~~~r~~~~~---~~~~~~--------~~~---------------- 53 (250)
T PRK12939 4 NLAGKRALVTGAARGLGAAFAEALAEAG---ATVAFNDGLAAEA---RELAAA--------LEA---------------- 53 (250)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHcC---CEEEEEeCCHHHH---HHHHHH--------HHh----------------
Confidence 3568999999999999999999999998 7888888864321 111111 111
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH-------hCcCEEEEcCcccCh-------hhhH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI-------SQTTIIFHIAATVRF-------DEHI 190 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~-------~~~d~Vih~a~~~~~-------~~~~ 190 (366)
...++.++.+|+.+.+ .+..++ .++|+|||++|.... ...+
T Consensus 54 -------------------~~~~~~~~~~Dl~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~ 108 (250)
T PRK12939 54 -------------------AGGRAHAIAADLADPA------SVQRFFDAAAAALGGLDGLVNNAGITNSKSATELDIDTW 108 (250)
T ss_pred -------------------cCCcEEEEEccCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHH
Confidence 1246889999999876 555554 368999999997431 2345
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 191 RTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
+..++.|+.++..+++.+.+. .+..+||++||...+....
T Consensus 109 ~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------------------------------- 151 (250)
T PRK12939 109 DAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDTALWGAP------------------------------------- 151 (250)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECchhhccCCC-------------------------------------
Confidence 667889999999988876542 1345899999976542211
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
....|+.+|...|.+++... .++.++.++||.+.++....... ..+...... .....
T Consensus 152 -~~~~y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~~--------~~~~~~~~~---------~~~~~ 213 (250)
T PRK12939 152 -KLGAYVASKGAVIGMTRSLARELGGRGITVNAIAPGLTATEATAYVPA--------DERHAYYLK---------GRALE 213 (250)
T ss_pred -CcchHHHHHHHHHHHHHHHHHHHhhhCEEEEEEEECCCCCccccccCC--------hHHHHHHHh---------cCCCC
Confidence 01579999999999987654 68999999999987764321110 011111111 12234
Q ss_pred CcccHHHHHHHHHHHHHhh
Q psy17528 343 DVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~ 361 (366)
.+++++|++++++.++...
T Consensus 214 ~~~~~~dva~~~~~l~~~~ 232 (250)
T PRK12939 214 RLQVPDDVAGAVLFLLSDA 232 (250)
T ss_pred CCCCHHHHHHHHHHHhCcc
Confidence 5789999999999998754
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.4e-15 Score=139.22 Aligned_cols=204 Identities=15% Similarity=0.133 Sum_probs=139.2
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
.++|+||||+|+||++++++|++.| ++|++++|+.... .+...+. ++
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~~g---~~vi~~~r~~~~~--~~~~~~~--------~~-------------------- 48 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAAAG---FDLAINDRPDDEE--LAATQQE--------LR-------------------- 48 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCC---CEEEEEecCchhH--HHHHHHH--------HH--------------------
Confidence 3689999999999999999999998 7899998874321 1111111 00
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh---------hhhHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF---------DEHIR 191 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~---------~~~~~ 191 (366)
....++.++.+|+++.+ .+..+++ .+|+|||+||.... ...++
T Consensus 49 ---------------~~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~ 107 (256)
T PRK12745 49 ---------------ALGVEVIFFPADVADLS------AHEAMLDAAQAAWGRIDCLVNNAGVGVKVRGDLLDLTPESFD 107 (256)
T ss_pred ---------------hcCCceEEEEecCCCHH------HHHHHHHHHHHhcCCCCEEEECCccCCCCCCChhhCCHHHHH
Confidence 11246889999999976 5555443 57999999996421 24556
Q ss_pred HHHHHHHHHHHHHHHHHHhc----CC-----CcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhh
Q psy17528 192 TAYNINVKGTQTILALAKRM----KG-----LKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLN 262 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~----~~-----~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 262 (366)
..+++|+.++..+++.+.+. .. ..+||++||..+.....
T Consensus 108 ~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~-------------------------------- 155 (256)
T PRK12745 108 RVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIMVSP-------------------------------- 155 (256)
T ss_pred HHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhccCCC--------------------------------
Confidence 78899999999888776431 11 56799999976542211
Q ss_pred hcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCC
Q psy17528 263 EHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTD 337 (366)
Q Consensus 263 ~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~ 337 (366)
....|+.+|...|.+++.+. ++++++++|||.+.++..... . ..+......+.
T Consensus 156 ------~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~---~------~~~~~~~~~~~------- 213 (256)
T PRK12745 156 ------NRGEYCISKAGLSMAAQLFAARLAEEGIGVYEVRPGLIKTDMTAPV---T------AKYDALIAKGL------- 213 (256)
T ss_pred ------CCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCCCcCcccccc---c------hhHHhhhhhcC-------
Confidence 12679999999999887765 689999999999988654321 0 01111111110
Q ss_pred CCcccCcccHHHHHHHHHHHHHh
Q psy17528 338 PNISMDVVPGDRVINAMAALAWY 360 (366)
Q Consensus 338 ~~~~~~~v~vdDva~ai~~~~~~ 360 (366)
.....|.+.+|+++++..++..
T Consensus 214 -~~~~~~~~~~d~a~~i~~l~~~ 235 (256)
T PRK12745 214 -VPMPRWGEPEDVARAVAALASG 235 (256)
T ss_pred -CCcCCCcCHHHHHHHHHHHhCC
Confidence 1134578999999999987754
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-15 Score=141.39 Aligned_cols=215 Identities=11% Similarity=0.051 Sum_probs=139.1
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+++|+||||+|+||++++++|++.| ++|++++|+... .+.+.+. +...
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g---~~vi~~~r~~~~---~~~~~~~--------~~~~------------------ 49 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEG---YRVAVADINSEK---AANVAQE--------INAE------------------ 49 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEECCHHH---HHHHHHH--------HHHh------------------
Confidence 5789999999999999999999998 789999987432 1111111 1100
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIRTA 193 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~~~ 193 (366)
. ...++.++.+|+++.+ .+..++. .+|+|||+||... ....+...
T Consensus 50 -------------~--~~~~~~~~~~D~~~~~------~i~~~~~~~~~~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~ 108 (259)
T PRK12384 50 -------------Y--GEGMAYGFGADATSEQ------SVLALSRGVDEIFGRVDLLVYNAGIAKAAFITDFQLGDFDRS 108 (259)
T ss_pred -------------c--CCceeEEEEccCCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHH
Confidence 0 0135788999999876 5555443 5799999998643 12345678
Q ss_pred HHHHHHHHHHHHHHHHhc---CC-CcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCC
Q psy17528 194 YNINVKGTQTILALAKRM---KG-LKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGK 269 (366)
Q Consensus 194 ~~~nv~~~~~ll~~a~~~---~~-~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (366)
+++|+.++..+++.+.+. .+ ..++|++||....... + .
T Consensus 109 ~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~~~~~~----------~----------------------------~ 150 (259)
T PRK12384 109 LQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGS----------K----------------------------H 150 (259)
T ss_pred HHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcccccCC----------C----------------------------C
Confidence 899999988777765431 13 3589999996432110 0 0
Q ss_pred CchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHh--cCcceeecCCCCccc
Q psy17528 270 PNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAG--TGLIRVVQTDPNISM 342 (366)
Q Consensus 270 ~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~l~~~~~~~~ 342 (366)
...|+.+|+..+.+++.+. +|++++++|||.++++.... ... ..+..... .+.....+..+....
T Consensus 151 ~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~pg~~~~~~~~~--~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (259)
T PRK12384 151 NSGYSAAKFGGVGLTQSLALDLAEYGITVHSLMLGNLLKSPMFQ--SLL------PQYAKKLGIKPDEVEQYYIDKVPLK 222 (259)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCcccchhhh--hhh------HHHHHhcCCChHHHHHHHHHhCccc
Confidence 1679999999888776654 78999999999988764321 000 11110100 000011112234456
Q ss_pred CcccHHHHHHHHHHHHHhh
Q psy17528 343 DVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~ 361 (366)
.+++.+|++++++.++...
T Consensus 223 ~~~~~~dv~~~~~~l~~~~ 241 (259)
T PRK12384 223 RGCDYQDVLNMLLFYASPK 241 (259)
T ss_pred CCCCHHHHHHHHHHHcCcc
Confidence 7899999999999887644
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.7e-15 Score=134.60 Aligned_cols=205 Identities=13% Similarity=0.164 Sum_probs=137.7
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||++++++|++.| ++|+++.|+... ..+.+.+. +..
T Consensus 3 ~~~~~vlItG~sg~iG~~l~~~l~~~G---~~v~~~~~~~~~--~~~~~~~~--------~~~----------------- 52 (248)
T PRK05557 3 LEGKVALVTGASRGIGRAIAERLAAQG---ANVVINYASSEA--GAEALVAE--------IGA----------------- 52 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCchh--HHHHHHHH--------HHh-----------------
Confidence 457899999999999999999999998 788888886432 11111111 100
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~ 191 (366)
...++.++.+|+.+.+ .+..+++ ++|+|||++|.... ...+.
T Consensus 53 ------------------~~~~~~~~~~Dl~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~ 108 (248)
T PRK05557 53 ------------------LGGKALAVQGDVSDAE------SVERAVDEAKAEFGGVDILVNNAGITRDNLLMRMKEEDWD 108 (248)
T ss_pred ------------------cCCceEEEEcCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHH
Confidence 1246788899999976 5555443 57999999997432 23456
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
..+..|+.++..+++.+.+. .+.++|+++||........
T Consensus 109 ~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~~~~~~~~-------------------------------------- 150 (248)
T PRK05557 109 RVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSVVGLMGNP-------------------------------------- 150 (248)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcccccCcCCC--------------------------------------
Confidence 67888999999888877642 2456899999974431110
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
....|+.+|...+.+++.+. .++.+++++|+.+.++...+. . ..+........ ....
T Consensus 151 ~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~v~pg~~~~~~~~~~-------~--~~~~~~~~~~~---------~~~~ 212 (248)
T PRK05557 151 GQANYAASKAGVIGFTKSLARELASRGITVNAVAPGFIETDMTDAL-------P--EDVKEAILAQI---------PLGR 212 (248)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccCCcccccc-------C--hHHHHHHHhcC---------CCCC
Confidence 01679999999988776554 589999999998865433211 0 11111111111 1234
Q ss_pred cccHHHHHHHHHHHHHh
Q psy17528 344 VVPGDRVINAMAALAWY 360 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~ 360 (366)
+.+++|+++++..++..
T Consensus 213 ~~~~~~va~~~~~l~~~ 229 (248)
T PRK05557 213 LGQPEEIASAVAFLASD 229 (248)
T ss_pred CcCHHHHHHHHHHHcCc
Confidence 67999999999887755
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.1e-15 Score=159.43 Aligned_cols=187 Identities=21% Similarity=0.199 Sum_probs=126.2
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
+.|+||||||+||||++|++.|.+.| +.|..
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~~g---~~v~~---------------------------------------------- 409 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEKQG---IAYEY---------------------------------------------- 409 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHhCC---CeEEe----------------------------------------------
Confidence 45789999999999999999999887 44421
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccC---h---hhhHHHHHHHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVR---F---DEHIRTAYNINV 198 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~---~---~~~~~~~~~~nv 198 (366)
..+|++|.+ .+...+. ++|+|||+|+... . ..+....+++|+
T Consensus 410 ------------------------~~~~l~d~~------~v~~~i~~~~pd~Vih~Aa~~~~~~~~~~~~~~~~~~~~N~ 459 (668)
T PLN02260 410 ------------------------GKGRLEDRS------SLLADIRNVKPTHVFNAAGVTGRPNVDWCESHKVETIRANV 459 (668)
T ss_pred ------------------------eccccccHH------HHHHHHHhhCCCEEEECCcccCCCCCChHHhCHHHHHHHHh
Confidence 112344443 4555554 7899999999752 2 346678899999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeeCcceecCc--------cccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCC
Q psy17528 199 KGTQTILALAKRMKGLKSFVHVSTAYCNCDR--------KFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKP 270 (366)
Q Consensus 199 ~~~~~ll~~a~~~~~~~~~v~iSS~~~~~~~--------~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (366)
.++.+++++|++. ++ +++++||.++|+.. .++.|+..+.| ..
T Consensus 460 ~gt~~l~~a~~~~-g~-~~v~~Ss~~v~~~~~~~~~~~~~p~~E~~~~~~----------------------------~~ 509 (668)
T PLN02260 460 VGTLTLADVCREN-GL-LMMNFATGCIFEYDAKHPEGSGIGFKEEDKPNF----------------------------TG 509 (668)
T ss_pred HHHHHHHHHHHHc-CC-eEEEEcccceecCCcccccccCCCCCcCCCCCC----------------------------CC
Confidence 9999999999987 66 47788888877521 13444332211 12
Q ss_pred chHHHHHHHHHHHHHHhcCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHH
Q psy17528 271 NSYTLTKATAEDLVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRV 350 (366)
Q Consensus 271 ~~Y~~sK~~~E~~l~~~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDv 350 (366)
+.|+.+|+.+|+++..+. +..++|+.++||...... ..|+..+++.... +.. + .+..+++|+
T Consensus 510 ~~Yg~sK~~~E~~~~~~~---~~~~~r~~~~~~~~~~~~----------~nfv~~~~~~~~~-~~v-p---~~~~~~~~~ 571 (668)
T PLN02260 510 SFYSKTKAMVEELLREYD---NVCTLRVRMPISSDLSNP----------RNFITKISRYNKV-VNI-P---NSMTVLDEL 571 (668)
T ss_pred ChhhHHHHHHHHHHHhhh---hheEEEEEEecccCCCCc----------cHHHHHHhcccee-ecc-C---CCceehhhH
Confidence 789999999999998874 567888888887532110 1234444433321 111 1 246777888
Q ss_pred HHHHHHHHHh
Q psy17528 351 INAMAALAWY 360 (366)
Q Consensus 351 a~ai~~~~~~ 360 (366)
+.+++.++..
T Consensus 572 ~~~~~~l~~~ 581 (668)
T PLN02260 572 LPISIEMAKR 581 (668)
T ss_pred HHHHHHHHHh
Confidence 8888877753
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.9e-15 Score=138.60 Aligned_cols=203 Identities=14% Similarity=0.104 Sum_probs=138.8
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+++++||||+|+||.+++++|++.| .+|++++|+... .+.+.+. +
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g---~~v~~~~r~~~~---~~~~~~~--------~--------------------- 46 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAG---DRVLALDIDAAA---LAAFADA--------L--------------------- 46 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHH--------h---------------------
Confidence 5789999999999999999999998 789999987432 1111110 0
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIRTA 193 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~~~ 193 (366)
...++.++.+|+.+.+ .+..++. ++|+|||++|.... ...+...
T Consensus 47 ----------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~ 104 (257)
T PRK07074 47 ----------------GDARFVPVACDLTDAA------SLAAALANAAAERGPVDVLVANAGAARAASLHDTTPASWRAD 104 (257)
T ss_pred ----------------cCCceEEEEecCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHH
Confidence 0135788999999976 5655554 48999999996431 1234556
Q ss_pred HHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCC
Q psy17528 194 YNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKP 270 (366)
Q Consensus 194 ~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (366)
+.+|+.+...+++.+... .+..+|+++||....... . .
T Consensus 105 ~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~--------~-------------------------------~ 145 (257)
T PRK07074 105 NALNLEAAYLCVEAVLEGMLKRSRGAVVNIGSVNGMAAL--------G-------------------------------H 145 (257)
T ss_pred HHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcCCC--------C-------------------------------C
Confidence 778999998888876321 245689999996543110 0 1
Q ss_pred chHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcc
Q psy17528 271 NSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVV 345 (366)
Q Consensus 271 ~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v 345 (366)
..|+.+|...+.+++.+. .+++++++||+.++++....... ....+...... .....+|+
T Consensus 146 ~~y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~------~~~~~~~~~~~---------~~~~~~~~ 210 (257)
T PRK07074 146 PAYSAAKAGLIHYTKLLAVEYGRFGIRANAVAPGTVKTQAWEARVA------ANPQVFEELKK---------WYPLQDFA 210 (257)
T ss_pred cccHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCCcchhhcccc------cChHHHHHHHh---------cCCCCCCC
Confidence 469999999998888776 57999999999998875321100 00111111111 12346899
Q ss_pred cHHHHHHHHHHHHHhh
Q psy17528 346 PGDRVINAMAALAWYF 361 (366)
Q Consensus 346 ~vdDva~ai~~~~~~~ 361 (366)
+++|++++++.++...
T Consensus 211 ~~~d~a~~~~~l~~~~ 226 (257)
T PRK07074 211 TPDDVANAVLFLASPA 226 (257)
T ss_pred CHHHHHHHHHHHcCch
Confidence 9999999999998643
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.3e-15 Score=137.02 Aligned_cols=212 Identities=17% Similarity=0.176 Sum_probs=136.1
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++|+||||+|+||.++++.|++.| ++|+++.|+.... +.+.+ .+...
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g---~~v~~~~r~~~~~---~~~~~--------~l~~~---------------- 51 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAG---GIVIAADIDKEAL---NELLE--------SLGKE---------------- 51 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEecChHHH---HHHHH--------HHHhh----------------
Confidence 468999999999999999999999998 7888888874321 11111 11000
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh----------hh
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF----------DE 188 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~----------~~ 188 (366)
. ....+.++.+|+.+++ ++..+++ .+|+|||||+.... ..
T Consensus 52 ---------------~--~~~~~~~~~~Dl~d~~------~~~~~~~~~~~~~~~id~vi~~A~~~~~~~~~~~~~~~~~ 108 (256)
T PRK09186 52 ---------------F--KSKKLSLVELDITDQE------SLEEFLSKSAEKYGKIDGAVNCAYPRNKDYGKKFFDVSLD 108 (256)
T ss_pred ---------------c--CCCceeEEEecCCCHH------HHHHHHHHHHHHcCCccEEEECCccccccccCccccCCHH
Confidence 0 1134667789999987 6666554 37999999974311 13
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCcc-ccccccCCCCCChHHHHHHhhhcchHHHHhhhhc
Q psy17528 189 HIRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRK-FIAEKFYPPVFTAEELSALVAHASDEEIALLNEH 264 (366)
Q Consensus 189 ~~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~-~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 264 (366)
.+...+++|+.+...+++.+.+. .+.++||++||.++..... ...+..
T Consensus 109 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~~~---------------------------- 160 (256)
T PRK09186 109 DFNENLSLHLGSSFLFSQQFAKYFKKQGGGNLVNISSIYGVVAPKFEIYEGT---------------------------- 160 (256)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhcCCceEEEEechhhhccccchhcccc----------------------------
Confidence 34667788888777666554331 2556999999976543211 000000
Q ss_pred ccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCC
Q psy17528 265 IIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPN 339 (366)
Q Consensus 265 ~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~ 339 (366)
....+..|+.+|...+.+.+... .++++++++|+.++++... .+... .... .
T Consensus 161 -~~~~~~~Y~~sK~a~~~l~~~la~e~~~~~i~v~~i~Pg~~~~~~~~-------------~~~~~-~~~~--------~ 217 (256)
T PRK09186 161 -SMTSPVEYAAIKAGIIHLTKYLAKYFKDSNIRVNCVSPGGILDNQPE-------------AFLNA-YKKC--------C 217 (256)
T ss_pred -ccCCcchhHHHHHHHHHHHHHHHHHhCcCCeEEEEEecccccCCCCH-------------HHHHH-HHhc--------C
Confidence 00112479999999998886544 6799999999988764210 11111 1110 0
Q ss_pred cccCcccHHHHHHHHHHHHHhh
Q psy17528 340 ISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 340 ~~~~~v~vdDva~ai~~~~~~~ 361 (366)
....+++.+|+|++++.++...
T Consensus 218 ~~~~~~~~~dva~~~~~l~~~~ 239 (256)
T PRK09186 218 NGKGMLDPDDICGTLVFLLSDQ 239 (256)
T ss_pred CccCCCCHHHhhhhHhheeccc
Confidence 1234789999999999988754
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.3e-15 Score=136.97 Aligned_cols=205 Identities=13% Similarity=0.115 Sum_probs=141.7
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++|+||||+|+||.+++++|++.| ++|++++|+.. +.+.+...
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G---~~vi~~~r~~~-----~~~~~~~~-------------------------- 48 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAG---ADIVGAGRSEP-----SETQQQVE-------------------------- 48 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEcCchH-----HHHHHHHH--------------------------
Confidence 568999999999999999999999998 78999988631 11111111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~ 191 (366)
.....+.++.+|+++.+ .+..+++ ++|++||+||.... ...++
T Consensus 49 -----------------~~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~ 105 (248)
T TIGR01832 49 -----------------ALGRRFLSLTADLSDIE------AIKALVDSAVEEFGHIDILVNNAGIIRRADAEEFSEKDWD 105 (248)
T ss_pred -----------------hcCCceEEEECCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHH
Confidence 01246788999999976 5554442 58999999997431 23556
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CC-CcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 192 TAYNINVKGTQTILALAKRM---KG-LKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~---~~-~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
..+++|+.+...+++.+.+. .+ ..++|++||..++.+..
T Consensus 106 ~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~------------------------------------- 148 (248)
T TIGR01832 106 DVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQGGI------------------------------------- 148 (248)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhccCCC-------------------------------------
Confidence 78899999998888876531 12 46899999986553211
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
....|+.+|...+.+++... +++++++++||.|..+....... .. ........ . . ...
T Consensus 149 -~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~----~~---~~~~~~~~-~---~-----~~~ 211 (248)
T TIGR01832 149 -RVPSYTASKHGVAGLTKLLANEWAAKGINVNAIAPGYMATNNTQALRA----DE---DRNAAILE-R---I-----PAG 211 (248)
T ss_pred -CCchhHHHHHHHHHHHHHHHHHhCccCcEEEEEEECcCcCcchhcccc----Ch---HHHHHHHh-c---C-----CCC
Confidence 11579999999999887765 58999999999998774321100 00 00001111 0 1 124
Q ss_pred CcccHHHHHHHHHHHHHhh
Q psy17528 343 DVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~ 361 (366)
.|+..+|+|++++.++...
T Consensus 212 ~~~~~~dva~~~~~l~s~~ 230 (248)
T TIGR01832 212 RWGTPDDIGGPAVFLASSA 230 (248)
T ss_pred CCcCHHHHHHHHHHHcCcc
Confidence 6899999999999988653
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=6e-15 Score=141.82 Aligned_cols=209 Identities=12% Similarity=0.090 Sum_probs=145.4
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
..++++++|||||+|+||.+++++|++.| .+|+++.|+... ..+.+.+.+.
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~~~G---~~V~l~~r~~~~--~~~~~~~~~~------------------------ 92 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFAKEG---ADIAIVYLDEHE--DANETKQRVE------------------------ 92 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCcch--HHHHHHHHHH------------------------
Confidence 46678999999999999999999999998 789898887532 1111111111
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh--------hh
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF--------DE 188 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~--------~~ 188 (366)
....++.++.+|+.+.+ .+.++++ .+|+|||+||.... .+
T Consensus 93 -------------------~~~~~~~~~~~Dl~~~~------~~~~~~~~i~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~ 147 (290)
T PRK06701 93 -------------------KEGVKCLLIPGDVSDEA------FCKDAVEETVRELGRLDILVNNAAFQYPQQSLEDITAE 147 (290)
T ss_pred -------------------hcCCeEEEEEccCCCHH------HHHHHHHHHHHHcCCCCEEEECCcccCCCCCcccCCHH
Confidence 01246778999999876 5555543 57999999996421 23
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 189 HIRTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 189 ~~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
.+...+++|+.++..+++++.+. ....++|++||..++....
T Consensus 148 ~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~~~~~~~------------------------------------- 190 (290)
T PRK06701 148 QLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITGYEGNE------------------------------------- 190 (290)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecccccCCCC-------------------------------------
Confidence 45678899999999999987652 2335899999987653221
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
....|+.+|...+.+++.+. .++++++++||.|+++..... .. ...+.... ......
T Consensus 191 -~~~~Y~~sK~a~~~l~~~la~~~~~~gIrv~~i~pG~v~T~~~~~~------~~--~~~~~~~~---------~~~~~~ 252 (290)
T PRK06701 191 -TLIDYSATKGAIHAFTRSLAQSLVQKGIRVNAVAPGPIWTPLIPSD------FD--EEKVSQFG---------SNTPMQ 252 (290)
T ss_pred -CcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCCCCcccccc------cC--HHHHHHHH---------hcCCcC
Confidence 01569999999998887766 589999999999998743210 00 11111111 112235
Q ss_pred CcccHHHHHHHHHHHHHhh
Q psy17528 343 DVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~ 361 (366)
.+.+++|+|++++.++...
T Consensus 253 ~~~~~~dva~~~~~ll~~~ 271 (290)
T PRK06701 253 RPGQPEELAPAYVFLASPD 271 (290)
T ss_pred CCcCHHHHHHHHHHHcCcc
Confidence 6889999999999988754
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.3e-15 Score=139.05 Aligned_cols=167 Identities=18% Similarity=0.186 Sum_probs=122.4
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++++++||||+|+||++++++|++.| ++|++++|+... .+.+.+.
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G---~~v~~~~~~~~~---~~~~~~~--------------------------- 61 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHG---AKVCIVDLQDDL---GQNVCDS--------------------------- 61 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcC---CEEEEEeCCHHH---HHHHHHH---------------------------
Confidence 4568999999999999999999999998 889999886421 1111110
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh---------hh
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF---------DE 188 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~---------~~ 188 (366)
.. ...++.++.+|+.+.+ .+..+++ .+|+|||+||.... ..
T Consensus 62 ----------------~~-~~~~~~~~~~Dl~d~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~ 118 (280)
T PLN02253 62 ----------------LG-GEPNVCFFHCDVTVED------DVSRAVDFTVDKFGTLDIMVNNAGLTGPPCPDIRNVELS 118 (280)
T ss_pred ----------------hc-CCCceEEEEeecCCHH------HHHHHHHHHHHHhCCCCEEEECCCcCCCCCCCcccCCHH
Confidence 10 1246789999999986 5665554 68999999997421 24
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcc
Q psy17528 189 HIRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHI 265 (366)
Q Consensus 189 ~~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (366)
+++..+++|+.++..+++.+.+. ....+++++||.......
T Consensus 119 ~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~------------------------------------ 162 (280)
T PLN02253 119 EFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASAIGG------------------------------------ 162 (280)
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhcccC------------------------------------
Confidence 56778999999999888866532 133578999887542110
Q ss_pred cCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCC
Q psy17528 266 IGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTL 305 (366)
Q Consensus 266 ~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~ 305 (366)
.....|+.+|...|.+.+.+. +++.+.+++|+.|.++.
T Consensus 163 --~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~ 205 (280)
T PLN02253 163 --LGPHAYTGSKHAVLGLTRSVAAELGKHGIRVNCVSPYAVPTAL 205 (280)
T ss_pred --CCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccc
Confidence 012579999999999998765 58999999999998764
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.1e-15 Score=139.57 Aligned_cols=203 Identities=15% Similarity=0.188 Sum_probs=139.9
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++|+||||+|+||.+++++|++.| .+|+++.|+.... .+...
T Consensus 13 ~~~k~vlItGas~~IG~~la~~l~~~G---~~Vi~~~r~~~~~----~~~~~---------------------------- 57 (255)
T PRK06841 13 LSGKVAVVTGGASGIGHAIAELFAAKG---ARVALLDRSEDVA----EVAAQ---------------------------- 57 (255)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHHHH----HHHHH----------------------------
Confidence 468999999999999999999999998 7899999974311 11000
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~ 191 (366)
. ....+.++.+|+.+.+ ++..++. .+|+|||++|.... ...+.
T Consensus 58 ---------------~--~~~~~~~~~~Dl~~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~ 114 (255)
T PRK06841 58 ---------------L--LGGNAKGLVCDVSDSQ------SVEAAVAAVISAFGRIDILVNSAGVALLAPAEDVSEEDWD 114 (255)
T ss_pred ---------------h--hCCceEEEEecCCCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHH
Confidence 0 0135668899999876 5555543 57999999997432 23456
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
..+++|+.++..+++.+... .+.++||++||....... .
T Consensus 115 ~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~--------------------------------------~ 156 (255)
T PRK06841 115 KTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLASQAGVVAL--------------------------------------E 156 (255)
T ss_pred HHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcchhhccCC--------------------------------------C
Confidence 68899999999998876542 245789999997543111 0
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
....|+.+|...+.+.+... +++.++.++||.|..+.... .+. . ........+ .....
T Consensus 157 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~--~~~----~--~~~~~~~~~---------~~~~~ 219 (255)
T PRK06841 157 RHVAYCASKAGVVGMTKVLALEWGPYGITVNAISPTVVLTELGKK--AWA----G--EKGERAKKL---------IPAGR 219 (255)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCcCcCccccc--ccc----h--hHHHHHHhc---------CCCCC
Confidence 11579999999888887765 58999999999998764321 010 0 001111111 11345
Q ss_pred cccHHHHHHHHHHHHHhh
Q psy17528 344 VVPGDRVINAMAALAWYF 361 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~~ 361 (366)
+.+.+|++++++.++...
T Consensus 220 ~~~~~~va~~~~~l~~~~ 237 (255)
T PRK06841 220 FAYPEEIAAAALFLASDA 237 (255)
T ss_pred CcCHHHHHHHHHHHcCcc
Confidence 789999999999988654
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.3e-15 Score=135.97 Aligned_cols=202 Identities=14% Similarity=0.162 Sum_probs=140.5
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||.++++.|++.| ++|++++|+.+. .+.+.+ .
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~g---~~V~~~~r~~~~---~~~~~~------------~---------------- 52 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQRG---ARVVAAARNAAA---LDRLAG------------E---------------- 52 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHH------------H----------------
Confidence 567899999999999999999999998 789999997421 111111 0
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh---CcCEEEEcCcccCh-------hhhHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS---QTTIIFHIAATVRF-------DEHIRTAYN 195 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~---~~d~Vih~a~~~~~-------~~~~~~~~~ 195 (366)
....++.+|+.+.+ .+.++++ .+|+|||++|.... ...++..++
T Consensus 53 --------------------~~~~~~~~D~~~~~------~v~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~ 106 (245)
T PRK07060 53 --------------------TGCEPLRLDVGDDA------AIRAALAAAGAFDGLVNCAGIASLESALDMTAEGFDRVMA 106 (245)
T ss_pred --------------------hCCeEEEecCCCHH------HHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHH
Confidence 12457789998865 5666654 58999999997431 234566788
Q ss_pred HHHHHHHHHHHHHHhc----CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCc
Q psy17528 196 INVKGTQTILALAKRM----KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPN 271 (366)
Q Consensus 196 ~nv~~~~~ll~~a~~~----~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (366)
+|+.++..+++.+.+. +..++||++||...+.... ...
T Consensus 107 ~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~--------------------------------------~~~ 148 (245)
T PRK07060 107 VNARGAALVARHVARAMIAAGRGGSIVNVSSQAALVGLP--------------------------------------DHL 148 (245)
T ss_pred HHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcCCCC--------------------------------------CCc
Confidence 9999999988876542 1236899999976542210 016
Q ss_pred hHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCccc
Q psy17528 272 SYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVP 346 (366)
Q Consensus 272 ~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~ 346 (366)
.|+.+|...|.+++.+. .+++++.+||+.++++..... |.. .......... .....+++
T Consensus 149 ~y~~sK~a~~~~~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~--~~~-----~~~~~~~~~~---------~~~~~~~~ 212 (245)
T PRK07060 149 AYCASKAALDAITRVLCVELGPHGIRVNSVNPTVTLTPMAAEA--WSD-----PQKSGPMLAA---------IPLGRFAE 212 (245)
T ss_pred HhHHHHHHHHHHHHHHHHHHhhhCeEEEEEeeCCCCCchhhhh--ccC-----HHHHHHHHhc---------CCCCCCCC
Confidence 79999999999887765 479999999999998754211 110 0001111111 11345899
Q ss_pred HHHHHHHHHHHHHhh
Q psy17528 347 GDRVINAMAALAWYF 361 (366)
Q Consensus 347 vdDva~ai~~~~~~~ 361 (366)
++|++++++.++..+
T Consensus 213 ~~d~a~~~~~l~~~~ 227 (245)
T PRK07060 213 VDDVAAPILFLLSDA 227 (245)
T ss_pred HHHHHHHHHHHcCcc
Confidence 999999999988765
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.9e-15 Score=136.87 Aligned_cols=193 Identities=14% Similarity=0.103 Sum_probs=131.0
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+|+++||||+|+||+++++.|+++ ++|++++|+.+. .+.+.+ .
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~----~~V~~~~r~~~~---~~~~~~------------~------------------ 45 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT----HTLLLGGRPAER---LDELAA------------E------------------ 45 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh----CCEEEEeCCHHH---HHHHHH------------H------------------
Confidence 579999999999999999999887 578999997421 111110 0
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh---CcCEEEEcCcccCh-------hhhHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS---QTTIIFHIAATVRF-------DEHIRTAYNIN 197 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~---~~d~Vih~a~~~~~-------~~~~~~~~~~n 197 (366)
...+.++.+|+.+.+ .+..++. ++|+|||++|.... ...+...++.|
T Consensus 46 -----------------~~~~~~~~~D~~~~~------~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n 102 (227)
T PRK08219 46 -----------------LPGATPFPVDLTDPE------AIAAAVEQLGRLDVLVHNAGVADLGPVAESTVDEWRATLEVN 102 (227)
T ss_pred -----------------hccceEEecCCCCHH------HHHHHHHhcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHH
Confidence 124678899999976 6777665 58999999997432 12345667888
Q ss_pred HHHHHHHH----HHHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchH
Q psy17528 198 VKGTQTIL----ALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSY 273 (366)
Q Consensus 198 v~~~~~ll----~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 273 (366)
+.+...+. +.+++ ..+++|++||..++.... ....|
T Consensus 103 ~~~~~~~~~~~~~~~~~--~~~~~v~~ss~~~~~~~~--------------------------------------~~~~y 142 (227)
T PRK08219 103 VVAPAELTRLLLPALRA--AHGHVVFINSGAGLRANP--------------------------------------GWGSY 142 (227)
T ss_pred hHHHHHHHHHHHHHHHh--CCCeEEEEcchHhcCcCC--------------------------------------CCchH
Confidence 88855444 44443 346899999986653211 01679
Q ss_pred HHHHHHHHHHHHHhc---CC-CCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHH
Q psy17528 274 TLTKATAEDLVRQVG---HE-LPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDR 349 (366)
Q Consensus 274 ~~sK~~~E~~l~~~~---~g-l~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdD 349 (366)
+.+|...+.+++... .+ +++..++|+.+.++.... +... .+. ......+++++|
T Consensus 143 ~~~K~a~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~-------------~~~~--~~~-------~~~~~~~~~~~d 200 (227)
T PRK08219 143 AASKFALRALADALREEEPGNVRVTSVHPGRTDTDMQRG-------------LVAQ--EGG-------EYDPERYLRPET 200 (227)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceEEEEecCCccchHhhh-------------hhhh--hcc-------ccCCCCCCCHHH
Confidence 999999998887654 34 888999988766542210 0000 010 011246899999
Q ss_pred HHHHHHHHHHhhh
Q psy17528 350 VINAMAALAWYFL 362 (366)
Q Consensus 350 va~ai~~~~~~~~ 362 (366)
+|++++.+++.+.
T Consensus 201 va~~~~~~l~~~~ 213 (227)
T PRK08219 201 VAKAVRFAVDAPP 213 (227)
T ss_pred HHHHHHHHHcCCC
Confidence 9999999987653
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.1e-15 Score=136.00 Aligned_cols=208 Identities=16% Similarity=0.160 Sum_probs=137.3
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||++++++|++.| .+|++++|+... .+.+.+ .
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g---~~v~~~~r~~~~---~~~~~~------------~---------------- 49 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEG---ARVAITGRDPAS---LEAARA------------E---------------- 49 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEecCCHHH---HHHHHH------------H----------------
Confidence 457899999999999999999999998 789898886321 111110 0
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH-------hCcCEEEEcCcccCh-------hhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI-------SQTTIIFHIAATVRF-------DEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~-------~~~d~Vih~a~~~~~-------~~~~~ 191 (366)
...++.++.+|+.+.+ ++..++ .++|+|||+||.... ...++
T Consensus 50 ------------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~ 105 (249)
T PRK06500 50 ------------------LGESALVIRADAGDVA------AQKALAQALAEAFGRLDAVFINAGVAKFAPLEDWDEAMFD 105 (249)
T ss_pred ------------------hCCceEEEEecCCCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHH
Confidence 1235778899998865 444333 268999999996431 23556
Q ss_pred HHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCC
Q psy17528 192 TAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKP 270 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (366)
..+++|+.++..+++++.+. ....+++++||....... | ..
T Consensus 106 ~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S~~~~~~~----------~----------------------------~~ 147 (249)
T PRK06500 106 RSFNTNVKGPYFLIQALLPLLANPASIVLNGSINAHIGM----------P----------------------------NS 147 (249)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCCEEEEEechHhccCC----------C----------------------------Cc
Confidence 78999999999999988742 123478887775432110 0 11
Q ss_pred chHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcc
Q psy17528 271 NSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVV 345 (366)
Q Consensus 271 ~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v 345 (366)
..|+.+|...|.+++.+. ++++++++||+.++++......... .....+......+.+ ..-+.
T Consensus 148 ~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~---~~~~~~~~~~~~~~~---------~~~~~ 215 (249)
T PRK06500 148 SVYAASKAALLSLAKTLSGELLPRGIRVNAVSPGPVQTPLYGKLGLPE---ATLDAVAAQIQALVP---------LGRFG 215 (249)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCCCHHHHhhccCc---cchHHHHHHHHhcCC---------CCCCc
Confidence 689999999999996554 5899999999999987432110000 000111112222111 11245
Q ss_pred cHHHHHHHHHHHHHhh
Q psy17528 346 PGDRVINAMAALAWYF 361 (366)
Q Consensus 346 ~vdDva~ai~~~~~~~ 361 (366)
..+|++++++.++...
T Consensus 216 ~~~~va~~~~~l~~~~ 231 (249)
T PRK06500 216 TPEEIAKAVLYLASDE 231 (249)
T ss_pred CHHHHHHHHHHHcCcc
Confidence 8899999999988643
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.6e-15 Score=136.67 Aligned_cols=201 Identities=16% Similarity=0.134 Sum_probs=135.5
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
|+|+||||+|+||.+++++|++.| ++|++++|+... .+.+.+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G---~~V~~~~r~~~~---~~~~~~~------------------------------- 43 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQG---HKVIATGRRQER---LQELKDE------------------------------- 43 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC---CEEEEEECCHHH---HHHHHHH-------------------------------
Confidence 579999999999999999999998 789999997431 1111110
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC--------hhhhHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR--------FDEHIRTA 193 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~--------~~~~~~~~ 193 (366)
...++.++.+|+.+.+ .+.++++ ++|+|||+||... ....++..
T Consensus 44 ---------------~~~~~~~~~~Dl~~~~------~i~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~ 102 (248)
T PRK10538 44 ---------------LGDNLYIAQLDVRNRA------AIEEMLASLPAEWRNIDVLVNNAGLALGLEPAHKASVEDWETM 102 (248)
T ss_pred ---------------hccceEEEEecCCCHH------HHHHHHHHHHHHcCCCCEEEECCCccCCCCCcccCCHHHHHHH
Confidence 1236788999999876 5555443 6899999998631 12355778
Q ss_pred HHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCC
Q psy17528 194 YNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKP 270 (366)
Q Consensus 194 ~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (366)
+++|+.++..+++.+.+. .+.+++|++||....... ...
T Consensus 103 ~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~--------------------------------------~~~ 144 (248)
T PRK10538 103 IDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPY--------------------------------------AGG 144 (248)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCcccCCCC--------------------------------------CCC
Confidence 899999977766655321 256789999997543111 001
Q ss_pred chHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcc
Q psy17528 271 NSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVV 345 (366)
Q Consensus 271 ~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v 345 (366)
..|+.+|...+.+.+... .++.+++++||.+.|+...... +......... .+ . ...++
T Consensus 145 ~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~i~~~~~~~~~-----~~~~~~~~~~--------~~-~---~~~~~ 207 (248)
T PRK10538 145 NVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVR-----FKGDDGKAEK--------TY-Q---NTVAL 207 (248)
T ss_pred chhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCeecccccchhh-----ccCcHHHHHh--------hc-c---ccCCC
Confidence 679999999999987765 6799999999999876432100 0000000000 01 1 12356
Q ss_pred cHHHHHHHHHHHHHhhh
Q psy17528 346 PGDRVINAMAALAWYFL 362 (366)
Q Consensus 346 ~vdDva~ai~~~~~~~~ 362 (366)
..+|+|++++.++..+.
T Consensus 208 ~~~dvA~~~~~l~~~~~ 224 (248)
T PRK10538 208 TPEDVSEAVWWVATLPA 224 (248)
T ss_pred CHHHHHHHHHHHhcCCC
Confidence 89999999999886553
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.7e-15 Score=139.66 Aligned_cols=193 Identities=15% Similarity=0.078 Sum_probs=132.8
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++|+||||+|+||.+++++|++.| ++|++++|+... +.+... .
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G---~~v~~~~r~~~~------~~~~~~---------~---------------- 48 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALG---ARVAIGDLDEAL------AKETAA---------E---------------- 48 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEECCHHH------HHHHHH---------H----------------
Confidence 457899999999999999999999998 788888886421 111100 0
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH-------hCcCEEEEcCcccCh-------hhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI-------SQTTIIFHIAATVRF-------DEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~-------~~~d~Vih~a~~~~~-------~~~~~ 191 (366)
. ..+.++.+|+.+++ .+.+++ .++|++|||||.... .....
T Consensus 49 ---------------~----~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~ 103 (273)
T PRK07825 49 ---------------L----GLVVGGPLDVTDPA------SFAAFLDAVEADLGPIDVLVNNAGVMPVGPFLDEPDAVTR 103 (273)
T ss_pred ---------------h----ccceEEEccCCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCccccCCHHHHH
Confidence 0 14678899999876 554444 257999999997431 23456
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
..+++|+.++..+.+.+.+. .+..++|++||........
T Consensus 104 ~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------------------------------------- 145 (273)
T PRK07825 104 RILDVNVYGVILGSKLAAPRMVPRGRGHVVNVASLAGKIPVP-------------------------------------- 145 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCccccCCCC--------------------------------------
Confidence 78899999888877765431 2557899999986542210
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
....|+.+|...+.+.+... .|+++++++|+.+-++.... . .......
T Consensus 146 ~~~~Y~asKaa~~~~~~~l~~el~~~gi~v~~v~Pg~v~t~~~~~---------------------~------~~~~~~~ 198 (273)
T PRK07825 146 GMATYCASKHAVVGFTDAARLELRGTGVHVSVVLPSFVNTELIAG---------------------T------GGAKGFK 198 (273)
T ss_pred CCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcCcchhhcc---------------------c------ccccCCC
Confidence 11679999988777665543 68999999999876542110 0 0011234
Q ss_pred cccHHHHHHHHHHHHHhhh
Q psy17528 344 VVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~~~ 362 (366)
++..+|+|++++.++.++.
T Consensus 199 ~~~~~~va~~~~~~l~~~~ 217 (273)
T PRK07825 199 NVEPEDVAAAIVGTVAKPR 217 (273)
T ss_pred CCCHHHHHHHHHHHHhCCC
Confidence 6788888888888877653
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-14 Score=133.80 Aligned_cols=199 Identities=13% Similarity=0.107 Sum_probs=138.6
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
++++++||||+|+||.+++++|++.| .+|++++|+... .+.+.+...
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G---~~V~~~~r~~~~---~~~~~~~~~--------------------------- 51 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAG---WDLALVARSQDA---LEALAAELR--------------------------- 51 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHHHH---------------------------
Confidence 46899999999999999999999998 789999997531 112211110
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIRT 192 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~~ 192 (366)
....++.++.+|+++.+ .+..+++ ++|+|||++|.... ....+.
T Consensus 52 ----------------~~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~ 109 (241)
T PRK07454 52 ----------------STGVKAAAYSIDLSNPE------AIAPGIAELLEQFGCPDVLINNAGMAYTGPLLEMPLSDWQW 109 (241)
T ss_pred ----------------hCCCcEEEEEccCCCHH------HHHHHHHHHHHHcCCCCEEEECCCccCCCchhhCCHHHHHH
Confidence 01246788999999876 5554443 58999999996421 234567
Q ss_pred HHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCC
Q psy17528 193 AYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGK 269 (366)
Q Consensus 193 ~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (366)
.+++|+.++..+++.+.+. .+..++|++||..++.... .
T Consensus 110 ~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~--------------------------------------~ 151 (241)
T PRK07454 110 VIQLNLTSVFQCCSAVLPGMRARGGGLIINVSSIAARNAFP--------------------------------------Q 151 (241)
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCcCCC--------------------------------------C
Confidence 7889999888877765321 2456899999987653211 0
Q ss_pred CchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCc
Q psy17528 270 PNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDV 344 (366)
Q Consensus 270 ~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~ 344 (366)
...|+.+|...+.+++... .+++++++||+.+-.+..... . ..... ....+
T Consensus 152 ~~~Y~~sK~~~~~~~~~~a~e~~~~gi~v~~i~pg~i~t~~~~~~-~-------------------~~~~~----~~~~~ 207 (241)
T PRK07454 152 WGAYCVSKAALAAFTKCLAEEERSHGIRVCTITLGAVNTPLWDTE-T-------------------VQADF----DRSAM 207 (241)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCcccCCccccc-c-------------------ccccc----ccccC
Confidence 1679999999998886643 589999999999876642110 0 00000 01235
Q ss_pred ccHHHHHHHHHHHHHhhh
Q psy17528 345 VPGDRVINAMAALAWYFL 362 (366)
Q Consensus 345 v~vdDva~ai~~~~~~~~ 362 (366)
+..+|+|++++.++..+.
T Consensus 208 ~~~~~va~~~~~l~~~~~ 225 (241)
T PRK07454 208 LSPEQVAQTILHLAQLPP 225 (241)
T ss_pred CCHHHHHHHHHHHHcCCc
Confidence 789999999999988764
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-14 Score=140.09 Aligned_cols=210 Identities=15% Similarity=0.097 Sum_probs=142.4
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++++++||||+|+||.+++++|++.| .+|++..|+.... ..+.+.+.+.
T Consensus 46 ~~~~k~vlITGas~gIG~aia~~L~~~G---~~Vi~~~~~~~~~-~~~~~~~~~~------------------------- 96 (294)
T PRK07985 46 RLKDRKALVTGGDSGIGRAAAIAYAREG---ADVAISYLPVEEE-DAQDVKKIIE------------------------- 96 (294)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHCC---CEEEEecCCcchh-hHHHHHHHHH-------------------------
Confidence 4678999999999999999999999998 7888877654321 1122222111
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC--------hhhh
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR--------FDEH 189 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~--------~~~~ 189 (366)
....++.++.+|+.+.+ .+.++++ .+|++||+||... ....
T Consensus 97 ------------------~~~~~~~~~~~Dl~~~~------~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~ 152 (294)
T PRK07985 97 ------------------ECGRKAVLLPGDLSDEK------FARSLVHEAHKALGGLDIMALVAGKQVAIPDIADLTSEQ 152 (294)
T ss_pred ------------------HcCCeEEEEEccCCCHH------HHHHHHHHHHHHhCCCCEEEECCCCCcCCCChhhCCHHH
Confidence 01245778899999876 5554443 5799999998631 1245
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 190 IRTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 190 ~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
+...+++|+.++..+++++.+. ....++|++||..++....
T Consensus 153 ~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~~~~~-------------------------------------- 194 (294)
T PRK07985 153 FQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQPSP-------------------------------------- 194 (294)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhccCCC--------------------------------------
Confidence 6778999999999998887652 1235899999987653211
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
....|+.+|...+.+++... +|+++++|+||.|.++...... .. .......... .....
T Consensus 195 ~~~~Y~asKaal~~l~~~la~el~~~gIrvn~i~PG~v~t~~~~~~~-----~~--~~~~~~~~~~---------~~~~r 258 (294)
T PRK07985 195 HLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGG-----QT--QDKIPQFGQQ---------TPMKR 258 (294)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHhHhCcEEEEEECCcCccccccccC-----CC--HHHHHHHhcc---------CCCCC
Confidence 01579999999998887665 5899999999999988532100 00 1111111111 11234
Q ss_pred cccHHHHHHHHHHHHHhh
Q psy17528 344 VVPGDRVINAMAALAWYF 361 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~~ 361 (366)
+...+|+|++++.++...
T Consensus 259 ~~~pedva~~~~fL~s~~ 276 (294)
T PRK07985 259 AGQPAELAPVYVYLASQE 276 (294)
T ss_pred CCCHHHHHHHHHhhhChh
Confidence 667899999999988654
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.9e-14 Score=133.78 Aligned_cols=163 Identities=14% Similarity=0.163 Sum_probs=119.0
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+++|+||||+|+||.+++++|++.| ++|++++|+... .+++.+.
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G---~~v~~~~r~~~~---~~~~~~~------------------------------ 45 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQG---ATLGLVARRTDA---LQAFAAR------------------------------ 45 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHh------------------------------
Confidence 4799999999999999999999998 789999987421 1111110
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh--------hhhHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF--------DEHIRT 192 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~--------~~~~~~ 192 (366)
.... .++.++.+|+++.+ .+.++++ .+|++||+||.... ...+..
T Consensus 46 -------------~~~~-~~~~~~~~Dl~~~~------~i~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~ 105 (257)
T PRK07024 46 -------------LPKA-ARVSVYAADVRDAD------ALAAAAADFIAAHGLPDVVIANAGISVGTLTEEREDLAVFRE 105 (257)
T ss_pred -------------cccC-CeeEEEEcCCCCHH------HHHHHHHHHHHhCCCCCEEEECCCcCCCccccccCCHHHHHH
Confidence 1111 26889999999976 5655543 37999999996431 134567
Q ss_pred HHHHHHHHHHHHHHHH----HhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 193 AYNINVKGTQTILALA----KRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 193 ~~~~nv~~~~~ll~~a----~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
.+++|+.++..+++.. .+. +..+||++||...+... |
T Consensus 106 ~~~~n~~g~~~l~~~~l~~~~~~-~~~~iv~isS~~~~~~~----------~---------------------------- 146 (257)
T PRK07024 106 VMDTNYFGMVATFQPFIAPMRAA-RRGTLVGIASVAGVRGL----------P---------------------------- 146 (257)
T ss_pred HHhHhcHHHHHHHHHHHHHHHhc-CCCEEEEEechhhcCCC----------C----------------------------
Confidence 8899999998877743 333 45789999997654211 0
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTL 305 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~ 305 (366)
....|+.+|...+.+++... ++++++++||+.|.++.
T Consensus 147 ~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~ 188 (257)
T PRK07024 147 GAGAYSASKAAAIKYLESLRVELRPAGVRVVTIAPGYIRTPM 188 (257)
T ss_pred CCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCcCch
Confidence 11679999999999987653 68999999999998874
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.1e-14 Score=135.28 Aligned_cols=205 Identities=15% Similarity=0.110 Sum_probs=138.9
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
++++++|||||+|+||.+++++|++.| ++|++++|+...
T Consensus 4 l~gk~vlItGas~gIG~~ia~~l~~~G---~~Vi~~~r~~~~-------------------------------------- 42 (258)
T PRK06398 4 LKDKVAIVTGGSQGIGKAVVNRLKEEG---SNVINFDIKEPS-------------------------------------- 42 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CeEEEEeCCccc--------------------------------------
Confidence 568999999999999999999999999 899999987431
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
..++.++.+|+.+++ .+.++++ .+|+||||||... ....++
T Consensus 43 -------------------~~~~~~~~~D~~~~~------~i~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~ 97 (258)
T PRK06398 43 -------------------YNDVDYFKVDVSNKE------QVIKGIDYVISKYGRIDILVNNAGIESYGAIHAVEEDEWD 97 (258)
T ss_pred -------------------cCceEEEEccCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHH
Confidence 125778999999976 5555443 5899999999642 123567
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
..+++|+.++..+++.+.+. .+..++|++||...+....
T Consensus 98 ~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------------------------------------- 139 (258)
T PRK06398 98 RIINVNVNGIFLMSKYTIPYMLKQDKGVIINIASVQSFAVTR-------------------------------------- 139 (258)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeCcchhccCCC--------------------------------------
Confidence 78899999998887766431 2457899999976542210
Q ss_pred CCchHHHHHHHHHHHHHHhc----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCc
Q psy17528 269 KPNSYTLTKATAEDLVRQVG----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDV 344 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~ 344 (366)
....|+.+|...+.+.+... .++.++.++||.|-.+..........+.. .......... +........+
T Consensus 140 ~~~~Y~~sKaal~~~~~~la~e~~~~i~vn~i~PG~v~T~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~ 212 (258)
T PRK06398 140 NAAAYVTSKHAVLGLTRSIAVDYAPTIRCVAVCPGSIRTPLLEWAAELEVGKD--PEHVERKIRE-----WGEMHPMKRV 212 (258)
T ss_pred CCchhhhhHHHHHHHHHHHHHHhCCCCEEEEEecCCccchHHhhhhhccccCC--hhhhHHHHHh-----hhhcCCcCCC
Confidence 11689999999999988765 34899999999987653221100000000 0000000000 0011112346
Q ss_pred ccHHHHHHHHHHHHHhh
Q psy17528 345 VPGDRVINAMAALAWYF 361 (366)
Q Consensus 345 v~vdDva~ai~~~~~~~ 361 (366)
...+|+|++++.++...
T Consensus 213 ~~p~eva~~~~~l~s~~ 229 (258)
T PRK06398 213 GKPEEVAYVVAFLASDL 229 (258)
T ss_pred cCHHHHHHHHHHHcCcc
Confidence 77899999999887643
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-14 Score=154.06 Aligned_cols=214 Identities=20% Similarity=0.206 Sum_probs=146.2
Q ss_pred cccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccc
Q psy17528 43 QEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGIT 122 (366)
Q Consensus 43 ~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (366)
...+++++|+||||+|+||+++++.|++.| .+|++++|+.+.. +...+.+
T Consensus 417 ~~~l~gk~vLVTGasggIG~~la~~L~~~G---a~Vvl~~r~~~~~---~~~~~~l------------------------ 466 (681)
T PRK08324 417 PKPLAGKVALVTGAAGGIGKATAKRLAAEG---ACVVLADLDEEAA---EAAAAEL------------------------ 466 (681)
T ss_pred CcCCCCCEEEEecCCCHHHHHHHHHHHHCc---CEEEEEeCCHHHH---HHHHHHH------------------------
Confidence 344678999999999999999999999998 7899999975321 1111100
Q ss_pred cccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhh
Q psy17528 123 HRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDE 188 (366)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~ 188 (366)
.. . ..+.++.+|+++.+ .+..+++ ++|+|||+||... ...
T Consensus 467 ------------------~~-~-~~v~~v~~Dvtd~~------~v~~~~~~~~~~~g~iDvvI~~AG~~~~~~~~~~~~~ 520 (681)
T PRK08324 467 ------------------GG-P-DRALGVACDVTDEA------AVQAAFEEAALAFGGVDIVVSNAGIAISGPIEETSDE 520 (681)
T ss_pred ------------------hc-c-CcEEEEEecCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHH
Confidence 00 0 46788999999876 5555443 6899999999643 124
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc---CCC-cEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhc
Q psy17528 189 HIRTAYNINVKGTQTILALAKRM---KGL-KSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEH 264 (366)
Q Consensus 189 ~~~~~~~~nv~~~~~ll~~a~~~---~~~-~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 264 (366)
.++..+++|+.+...+++.+.+. .+. .+||++||..+.....
T Consensus 521 ~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~~~~~~---------------------------------- 566 (681)
T PRK08324 521 DWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNAVNPGP---------------------------------- 566 (681)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCccccCCCC----------------------------------
Confidence 55678899999999987766431 132 6899999976542211
Q ss_pred ccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccc-cCCCCCCCccccccchHHHHHHHHhcCcce----ee
Q psy17528 265 IIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVF-PTLQEPMPLWIKGFNGVMALALGAGTGLIR----VV 334 (366)
Q Consensus 265 ~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~-G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~l 334 (366)
....|+.+|...+.+++.+. +++++++++|+.|| ++.... +.|. .......+... ..
T Consensus 567 ----~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~Pg~v~~~t~~~~-~~~~--------~~~~~~~g~~~~~~~~~ 633 (681)
T PRK08324 567 ----NFGAYGAAKAAELHLVRQLALELGPDGIRVNGVNPDAVVRGSGIWT-GEWI--------EARAAAYGLSEEELEEF 633 (681)
T ss_pred ----CcHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCceeecCCcccc-chhh--------hhhhhhccCChHHHHHH
Confidence 11679999999999998765 57999999999998 553211 1110 00001111111 12
Q ss_pred cCCCCcccCcccHHHHHHHHHHHHH
Q psy17528 335 QTDPNISMDVVPGDRVINAMAALAW 359 (366)
Q Consensus 335 ~~~~~~~~~~v~vdDva~ai~~~~~ 359 (366)
+..+...+.+++++|+|++++.++.
T Consensus 634 ~~~~~~l~~~v~~~DvA~a~~~l~s 658 (681)
T PRK08324 634 YRARNLLKREVTPEDVAEAVVFLAS 658 (681)
T ss_pred HHhcCCcCCccCHHHHHHHHHHHhC
Confidence 3345567789999999999999874
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.5e-15 Score=136.25 Aligned_cols=198 Identities=13% Similarity=0.093 Sum_probs=132.2
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
++|+||||+|+||.+++++|++.| .+|+++.|+... +.. ++.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g---~~v~~~~r~~~~------~~~---------~~~-------------------- 44 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRG---YRVLAACRKPDD------VAR---------MNS-------------------- 44 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHHH------hHH---------HHh--------------------
Confidence 589999999999999999999998 789999987431 111 000
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH--------hCcCEEEEcCcccC-------hhhhHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI--------SQTTIIFHIAATVR-------FDEHIRTA 193 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~--------~~~d~Vih~a~~~~-------~~~~~~~~ 193 (366)
..+..+.+|+.+.+ ++..++ ..+|.+||++|... ....++..
T Consensus 45 -----------------~~~~~~~~D~~~~~------~~~~~~~~i~~~~~~~~~~ii~~ag~~~~~~~~~~~~~~~~~~ 101 (256)
T PRK08017 45 -----------------LGFTGILLDLDDPE------SVERAADEVIALTDNRLYGLFNNAGFGVYGPLSTISRQQMEQQ 101 (256)
T ss_pred -----------------CCCeEEEeecCCHH------HHHHHHHHHHHhcCCCCeEEEECCCCCCccchhhCCHHHHHHH
Confidence 13567888998865 444333 24689999999642 12345678
Q ss_pred HHHHHHHHHHHH----HHHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCC
Q psy17528 194 YNINVKGTQTIL----ALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGK 269 (366)
Q Consensus 194 ~~~nv~~~~~ll----~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (366)
++.|+.++..+. +.+.+. +.+++|++||.+...... .
T Consensus 102 ~~~n~~g~~~~~~~~~~~~~~~-~~~~iv~~ss~~~~~~~~--------------------------------------~ 142 (256)
T PRK08017 102 FSTNFFGTHQLTMLLLPAMLPH-GEGRIVMTSSVMGLISTP--------------------------------------G 142 (256)
T ss_pred HHHhhHHHHHHHHHHHHHHhhc-CCCEEEEEcCcccccCCC--------------------------------------C
Confidence 899999887764 444444 567899999975542210 1
Q ss_pred CchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCc
Q psy17528 270 PNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDV 344 (366)
Q Consensus 270 ~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~ 344 (366)
...|+.+|...|.+.+... .+++++++|||.+.++....... ... ...+..++...+.+
T Consensus 143 ~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~---------------~~~-~~~~~~~~~~~~~~ 206 (256)
T PRK08017 143 RGAYAASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFTDNVNQ---------------TQS-DKPVENPGIAARFT 206 (256)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCcccchhhcccc---------------hhh-ccchhhhHHHhhcC
Confidence 1679999999998876532 68999999998876542211000 000 00111122233568
Q ss_pred ccHHHHHHHHHHHHHhhh
Q psy17528 345 VPGDRVINAMAALAWYFL 362 (366)
Q Consensus 345 v~vdDva~ai~~~~~~~~ 362 (366)
++++|+++++..+++...
T Consensus 207 ~~~~d~a~~~~~~~~~~~ 224 (256)
T PRK08017 207 LGPEAVVPKLRHALESPK 224 (256)
T ss_pred CCHHHHHHHHHHHHhCCC
Confidence 999999999999987764
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.5e-14 Score=134.13 Aligned_cols=209 Identities=14% Similarity=0.132 Sum_probs=139.2
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
++++++|||||+|+||++++++|++.| .+|++++|+... .+.+.+. +.
T Consensus 10 ~~~k~ilItGa~g~IG~~la~~l~~~G---~~V~~~~r~~~~---~~~~~~~--------i~------------------ 57 (259)
T PRK08213 10 LSGKTALVTGGSRGLGLQIAEALGEAG---ARVVLSARKAEE---LEEAAAH--------LE------------------ 57 (259)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcC---CEEEEEeCCHHH---HHHHHHH--------HH------------------
Confidence 457999999999999999999999998 789999986421 1111110 10
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
....++.++.+|+++++ .+..++. .+|+|||+||... ....++
T Consensus 58 -----------------~~~~~~~~~~~Dl~d~~------~i~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~ 114 (259)
T PRK08213 58 -----------------ALGIDALWIAADVADEA------DIERLAEETLERFGHVDILVNNAGATWGAPAEDHPVEAWD 114 (259)
T ss_pred -----------------hcCCeEEEEEccCCCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHH
Confidence 01246778999999976 5544442 5799999999632 123456
Q ss_pred HHHHHHHHHHHHHHHHHHhc----CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 192 TAYNINVKGTQTILALAKRM----KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~----~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
..+++|+.++..+++++.+. ++.++||++||...+....+. .
T Consensus 115 ~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~~~~~~~~~~-----~----------------------------- 160 (259)
T PRK08213 115 KVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASVAGLGGNPPE-----V----------------------------- 160 (259)
T ss_pred HHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECChhhccCCCcc-----c-----------------------------
Confidence 78889999999999976542 245689999997654322110 0
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
.....|+.+|+..|.+++.+. .++.+++++|+.+-++.... .. ..+......+.+ ..
T Consensus 161 ~~~~~Y~~sKa~~~~~~~~~a~~~~~~gi~v~~v~Pg~~~t~~~~~---~~------~~~~~~~~~~~~---------~~ 222 (259)
T PRK08213 161 MDTIAYNTSKGAVINFTRALAAEWGPHGIRVNAIAPGFFPTKMTRG---TL------ERLGEDLLAHTP---------LG 222 (259)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHhcccCEEEEEEecCcCCCcchhh---hh------HHHHHHHHhcCC---------CC
Confidence 001679999999999988765 57999999999887653221 10 112222222111 12
Q ss_pred CcccHHHHHHHHHHHHHhh
Q psy17528 343 DVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~ 361 (366)
-+...+|++.++..++...
T Consensus 223 ~~~~~~~va~~~~~l~~~~ 241 (259)
T PRK08213 223 RLGDDEDLKGAALLLASDA 241 (259)
T ss_pred CCcCHHHHHHHHHHHhCcc
Confidence 3456899999888877543
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.5e-14 Score=134.24 Aligned_cols=214 Identities=14% Similarity=0.097 Sum_probs=141.4
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++++++||||+|+||.+++++|++.| ++|++++|+... .+.+.+.+. .
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G---~~vv~~~r~~~~---~~~~~~~~~--------~---------------- 53 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREG---AAVALADLDAAL---AERAAAAIA--------R---------------- 53 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHHHH--------h----------------
Confidence 3568999999999999999999999998 789999996432 122211111 0
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHI 190 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~ 190 (366)
.....++.++.+|+++.+ ++..+++ .+|++|||||... ....+
T Consensus 54 -----------------~~~~~~~~~~~~Dl~~~~------~~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~ 110 (260)
T PRK07063 54 -----------------DVAGARVLAVPADVTDAA------SVAAAVAAAEEAFGPLDVLVNNAGINVFADPLAMTDEDW 110 (260)
T ss_pred -----------------ccCCceEEEEEccCCCHH------HHHHHHHHHHHHhCCCcEEEECCCcCCCCChhhCCHHHH
Confidence 001246788999999976 5655554 6899999999642 12456
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 191 RTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
+..+++|+.++..+++.+.+. .+..++|++||........
T Consensus 111 ~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------------------------------- 153 (260)
T PRK07063 111 RRCFAVDLDGAWNGCRAVLPGMVERGRGSIVNIASTHAFKIIP------------------------------------- 153 (260)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHhhCCeEEEEECChhhccCCC-------------------------------------
Confidence 778899999998888876431 2446899999986542210
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
....|+.+|...+.+.+... +|++++.++||.|-.+.... +.................. ...
T Consensus 154 -~~~~Y~~sKaa~~~~~~~la~el~~~gIrvn~v~PG~v~t~~~~~---~~~~~~~~~~~~~~~~~~~---------~~~ 220 (260)
T PRK07063 154 -GCFPYPVAKHGLLGLTRALGIEYAARNVRVNAIAPGYIETQLTED---WWNAQPDPAAARAETLALQ---------PMK 220 (260)
T ss_pred -CchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccChhhhh---hhhccCChHHHHHHHHhcC---------CCC
Confidence 01579999999999987765 68999999999987653211 0000000000111111100 112
Q ss_pred CcccHHHHHHHHHHHHHhh
Q psy17528 343 DVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~ 361 (366)
-+...+|+|++++.++...
T Consensus 221 r~~~~~~va~~~~fl~s~~ 239 (260)
T PRK07063 221 RIGRPEEVAMTAVFLASDE 239 (260)
T ss_pred CCCCHHHHHHHHHHHcCcc
Confidence 3567899999999988654
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.3e-14 Score=133.94 Aligned_cols=207 Identities=14% Similarity=0.124 Sum_probs=141.2
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
++++++|||||+|+||.+++++|++.| .+|++++|+... .+.+.+. ++.
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G---~~vvl~~r~~~~---~~~~~~~--------l~~----------------- 55 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYG---AEIIINDITAER---AELAVAK--------LRQ----------------- 55 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcC---CEEEEEcCCHHH---HHHHHHH--------HHh-----------------
Confidence 468899999999999999999999998 789999887432 1111111 110
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
...++.++.+|+++.+ .+..++. .+|+|||++|... ....++
T Consensus 56 ------------------~~~~~~~~~~Dl~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~ 111 (254)
T PRK08085 56 ------------------EGIKAHAAPFNVTHKQ------EVEAAIEHIEKDIGPIDVLINNAGIQRRHPFTEFPEQEWN 111 (254)
T ss_pred ------------------cCCeEEEEecCCCCHH------HHHHHHHHHHHhcCCCCEEEECCCcCCCCChhhCCHHHHH
Confidence 1235678889999976 5555543 4799999999642 134567
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
..+++|+.++..+++.+.+. .+..+||++||....... +
T Consensus 112 ~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~--------------------------------------~ 153 (254)
T PRK08085 112 DVIAVNQTAVFLVSQAVARYMVKRQAGKIINICSMQSELGR--------------------------------------D 153 (254)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccchhccCC--------------------------------------C
Confidence 78899999988888766542 245689999997532111 0
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
....|+.+|...+.+++... +++++++++||.+.++....... . ..+....... .....
T Consensus 154 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pG~~~t~~~~~~~~----~---~~~~~~~~~~---------~p~~~ 217 (254)
T PRK08085 154 TITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVE----D---EAFTAWLCKR---------TPAAR 217 (254)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCCCCCcchhhhcc----C---HHHHHHHHhc---------CCCCC
Confidence 11679999999999998875 68999999999998875432110 0 1111111111 11234
Q ss_pred cccHHHHHHHHHHHHHhh
Q psy17528 344 VVPGDRVINAMAALAWYF 361 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~~ 361 (366)
+...+|++++++.++...
T Consensus 218 ~~~~~~va~~~~~l~~~~ 235 (254)
T PRK08085 218 WGDPQELIGAAVFLSSKA 235 (254)
T ss_pred CcCHHHHHHHHHHHhCcc
Confidence 778899999999888643
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.1e-14 Score=131.13 Aligned_cols=207 Identities=12% Similarity=0.077 Sum_probs=136.5
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
.++++|||||+|+||.+++++|++.| .+|+++.|.... ..+.+.+. +..
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g---~~v~~~~~~~~~--~~~~~~~~--------~~~------------------ 56 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHG---FDVAVHYNRSRD--EAEALAAE--------IRA------------------ 56 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCCHH--HHHHHHHH--------HHh------------------
Confidence 46899999999999999999999998 778777664321 11111111 100
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIRT 192 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~~ 192 (366)
...++.++.+|+++.+ .+..++. .+|+||||||.... ...+..
T Consensus 57 -----------------~~~~~~~~~~Dl~d~~------~~~~~~~~~~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~ 113 (258)
T PRK09134 57 -----------------LGRRAVALQADLADEA------EVRALVARASAALGPITLLVNNASLFEYDSAASFTRASWDR 113 (258)
T ss_pred -----------------cCCeEEEEEcCCCCHH------HHHHHHHHHHHHcCCCCEEEECCcCCCCCccccCCHHHHHH
Confidence 1246788999999876 5555543 47999999996421 234567
Q ss_pred HHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCC
Q psy17528 193 AYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGK 269 (366)
Q Consensus 193 ~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (366)
.+++|+.++..+++.+... ....++|+++|...+... | .
T Consensus 114 ~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~~~~~~----------p----------------------------~ 155 (258)
T PRK09134 114 HMATNLRAPFVLAQAFARALPADARGLVVNMIDQRVWNLN----------P----------------------------D 155 (258)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchhhcCCC----------C----------------------------C
Confidence 8899999999998876542 123578888775433111 1 0
Q ss_pred CchHHHHHHHHHHHHHHhc----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcc
Q psy17528 270 PNSYTLTKATAEDLVRQVG----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVV 345 (366)
Q Consensus 270 ~~~Y~~sK~~~E~~l~~~~----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v 345 (366)
...|+.+|...|.+.+.+. ..+.+++++||.++...... .........+.. .....
T Consensus 156 ~~~Y~~sK~a~~~~~~~la~~~~~~i~v~~i~PG~v~t~~~~~-----------~~~~~~~~~~~~---------~~~~~ 215 (258)
T PRK09134 156 FLSYTLSKAALWTATRTLAQALAPRIRVNAIGPGPTLPSGRQS-----------PEDFARQHAATP---------LGRGS 215 (258)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecccccCCcccC-----------hHHHHHHHhcCC---------CCCCc
Confidence 1579999999999888865 34899999999887643210 001111111110 11247
Q ss_pred cHHHHHHHHHHHHHhhhhcC
Q psy17528 346 PGDRVINAMAALAWYFLFSC 365 (366)
Q Consensus 346 ~vdDva~ai~~~~~~~~~~~ 365 (366)
.++|+|++++.+++.+..+|
T Consensus 216 ~~~d~a~~~~~~~~~~~~~g 235 (258)
T PRK09134 216 TPEEIAAAVRYLLDAPSVTG 235 (258)
T ss_pred CHHHHHHHHHHHhcCCCcCC
Confidence 79999999999998765444
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-14 Score=135.12 Aligned_cols=206 Identities=16% Similarity=0.154 Sum_probs=140.7
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++||||||+|+||.+++++|++.| .+|+++.|+.. .+++.+.+.
T Consensus 13 l~~k~vlItGas~gIG~~ia~~l~~~G---~~v~~~~~~~~----~~~~~~~~~-------------------------- 59 (258)
T PRK06935 13 LDGKVAIVTGGNTGLGQGYAVALAKAG---ADIIITTHGTN----WDETRRLIE-------------------------- 59 (258)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCcH----HHHHHHHHH--------------------------
Confidence 568999999999999999999999998 78989988721 122222111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
....++.++.+|+.+.+ .+..+++ .+|++||++|... ....++
T Consensus 60 -----------------~~~~~~~~~~~D~~~~~------~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~ 116 (258)
T PRK06935 60 -----------------KEGRKVTFVQVDLTKPE------SAEKVVKEALEEFGKIDILVNNAGTIRRAPLLEYKDEDWN 116 (258)
T ss_pred -----------------hcCCceEEEEcCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHH
Confidence 01246788999999976 5655554 5799999999643 123566
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
..+++|+.+...+.+.+.+. .+..++|++||...+....
T Consensus 117 ~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------------------------------------- 158 (258)
T PRK06935 117 AVMDINLNSVYHLSQAVAKVMAKQGSGKIINIASMLSFQGGK-------------------------------------- 158 (258)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECCHHhccCCC--------------------------------------
Confidence 78889999987777665431 2456899999986542211
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
....|+.+|...+.+++... +|+++++++||.|..+........ . ......... .....
T Consensus 159 ~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~----~---~~~~~~~~~---------~~~~~ 222 (258)
T PRK06935 159 FVPAYTASKHGVAGLTKAFANELAAYNIQVNAIAPGYIKTANTAPIRAD----K---NRNDEILKR---------IPAGR 222 (258)
T ss_pred CchhhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeccccccchhhcccC----h---HHHHHHHhc---------CCCCC
Confidence 11579999999999887765 689999999999987643211100 0 001111111 11234
Q ss_pred cccHHHHHHHHHHHHHhh
Q psy17528 344 VVPGDRVINAMAALAWYF 361 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~~ 361 (366)
+...+|++++++.++...
T Consensus 223 ~~~~~dva~~~~~l~s~~ 240 (258)
T PRK06935 223 WGEPDDLMGAAVFLASRA 240 (258)
T ss_pred CCCHHHHHHHHHHHcChh
Confidence 777899999999887643
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.2e-14 Score=130.79 Aligned_cols=207 Identities=16% Similarity=0.099 Sum_probs=145.1
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
..++|.++||||++.||.++++.|.+.| ++|++..|+.+ +|.++...
T Consensus 3 ~~~~kv~lITGASSGiG~A~A~~l~~~G---~~vvl~aRR~d------rL~~la~~------------------------ 49 (246)
T COG4221 3 TLKGKVALITGASSGIGEATARALAEAG---AKVVLAARREE------RLEALADE------------------------ 49 (246)
T ss_pred CCCCcEEEEecCcchHHHHHHHHHHHCC---CeEEEEeccHH------HHHHHHHh------------------------
Confidence 3457899999999999999999999999 89999999843 33332211
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH-------hCcCEEEEcCcccC-------hhhhH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI-------SQTTIIFHIAATVR-------FDEHI 190 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~-------~~~d~Vih~a~~~~-------~~~~~ 190 (366)
... ..+..+..|++|.. .+..++ .++|++|||||... ...++
T Consensus 50 ----------------~~~--~~~~~~~~DVtD~~------~~~~~i~~~~~~~g~iDiLvNNAGl~~g~~~~~~~~~dw 105 (246)
T COG4221 50 ----------------IGA--GAALALALDVTDRA------AVEAAIEALPEEFGRIDILVNNAGLALGDPLDEADLDDW 105 (246)
T ss_pred ----------------hcc--CceEEEeeccCCHH------HHHHHHHHHHHhhCcccEEEecCCCCcCChhhhCCHHHH
Confidence 111 46788899999986 433333 36899999999853 23567
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 191 RTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
+..+++|+.|..+..++.... .+-.++|.+||..+.-. .
T Consensus 106 ~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~~~--------------------------------------y 147 (246)
T COG4221 106 DRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAGRYP--------------------------------------Y 147 (246)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEecccccccc--------------------------------------C
Confidence 889999999998888876432 24448999999864311 1
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
+..+.|+.+|+....+..... ++++++.+-||.|-.......+ +.+-..-.. .++ ...
T Consensus 148 ~~~~vY~ATK~aV~~fs~~LR~e~~g~~IRVt~I~PG~v~~~~~s~v~-----~~g~~~~~~--------~~y----~~~ 210 (246)
T COG4221 148 PGGAVYGATKAAVRAFSLGLRQELAGTGIRVTVISPGLVETTEFSTVR-----FEGDDERAD--------KVY----KGG 210 (246)
T ss_pred CCCccchhhHHHHHHHHHHHHHHhcCCCeeEEEecCceecceeccccc-----CCchhhhHH--------HHh----ccC
Confidence 223789999998887776555 7899999999998654322111 000000000 011 234
Q ss_pred CcccHHHHHHHHHHHHHhhhh
Q psy17528 343 DVVPGDRVINAMAALAWYFLF 363 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~~~ 363 (366)
..+..+|+|++++++++.|..
T Consensus 211 ~~l~p~dIA~~V~~~~~~P~~ 231 (246)
T COG4221 211 TALTPEDIAEAVLFAATQPQH 231 (246)
T ss_pred CCCCHHHHHHHHHHHHhCCCc
Confidence 588999999999999998864
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.3e-14 Score=131.89 Aligned_cols=196 Identities=13% Similarity=0.076 Sum_probs=134.7
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
|++++|+||||+|+||.+++++|++.| ++|+++.|+....
T Consensus 1 ~~~k~vlItG~s~~iG~~ia~~l~~~G---~~v~~~~r~~~~~------------------------------------- 40 (234)
T PRK07577 1 MSSRTVLVTGATKGIGLALSLRLANLG---HQVIGIARSAIDD------------------------------------- 40 (234)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCC---CEEEEEeCCcccc-------------------------------------
Confidence 356899999999999999999999998 8999999975320
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh------CcCEEEEcCcccCh-------hhhHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS------QTTIIFHIAATVRF-------DEHIRT 192 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~------~~d~Vih~a~~~~~-------~~~~~~ 192 (366)
....++.+|+.+.+ .+.+++. ++|+|||++|.... ...+..
T Consensus 41 --------------------~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~ 94 (234)
T PRK07577 41 --------------------FPGELFACDLADIE------QTAATLAQINEIHPVDAIVNNVGIALPQPLGKIDLAALQD 94 (234)
T ss_pred --------------------cCceEEEeeCCCHH------HHHHHHHHHHHhCCCcEEEECCCCCCCCChHHCCHHHHHH
Confidence 01246789999876 5555554 57999999997432 234556
Q ss_pred HHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCC
Q psy17528 193 AYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGK 269 (366)
Q Consensus 193 ~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (366)
.+++|+.+...+.+.+.+. .+..++|++||...++.. .
T Consensus 95 ~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~---------------------------------------~ 135 (234)
T PRK07577 95 VYDLNVRAAVQVTQAFLEGMKLREQGRIVNICSRAIFGAL---------------------------------------D 135 (234)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccccccCCC---------------------------------------C
Confidence 7888999887776655331 256799999997644221 0
Q ss_pred CchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCc
Q psy17528 270 PNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDV 344 (366)
Q Consensus 270 ~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~ 344 (366)
...|+.+|...|.+++... +++.++++|||.+.++...... .............. .....
T Consensus 136 ~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~------~~~~~~~~~~~~~~---------~~~~~ 200 (234)
T PRK07577 136 RTSYSAAKSALVGCTRTWALELAEYGITVNAVAPGPIETELFRQTR------PVGSEEEKRVLASI---------PMRRL 200 (234)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhCcEEEEEecCcccCccccccc------ccchhHHHHHhhcC---------CCCCC
Confidence 1679999999998887654 5899999999999876421100 00000111111111 11224
Q ss_pred ccHHHHHHHHHHHHHhh
Q psy17528 345 VPGDRVINAMAALAWYF 361 (366)
Q Consensus 345 v~vdDva~ai~~~~~~~ 361 (366)
...+|+|.+++.++..+
T Consensus 201 ~~~~~~a~~~~~l~~~~ 217 (234)
T PRK07577 201 GTPEEVAAAIAFLLSDD 217 (234)
T ss_pred cCHHHHHHHHHHHhCcc
Confidence 57899999999988664
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.9e-14 Score=131.47 Aligned_cols=196 Identities=15% Similarity=0.139 Sum_probs=135.8
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++|+||||+|+||++++++|++.| .+|++++|+... .+++.+.+.
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g---~~V~~~~r~~~~---~~~~~~~l~-------------------------- 51 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEG---YKVAITARDQKE---LEEAAAELN-------------------------- 51 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCC---CEEEEeeCCHHH---HHHHHHHHh--------------------------
Confidence 456899999999999999999999998 789999997432 111111110
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~ 191 (366)
.. .++.++.+|+.+.+ .+..+++ ++|+|||++|.... ...+.
T Consensus 52 -----------------~~-~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~ 107 (237)
T PRK07326 52 -----------------NK-GNVLGLAADVRDEA------DVQRAVDAIVAAFGGLDVLIANAGVGHFAPVEELTPEEWR 107 (237)
T ss_pred -----------------cc-CcEEEEEccCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHH
Confidence 01 46788999999876 5555443 68999999986432 23456
Q ss_pred HHHHHHHHHHHHHHHHHHhc--CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCC
Q psy17528 192 TAYNINVKGTQTILALAKRM--KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGK 269 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~--~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (366)
..+++|+.+...+++.+.+. .+.+++|++||..+..... .
T Consensus 108 ~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~--------------------------------------~ 149 (237)
T PRK07326 108 LVIDTNLTGAFYTIKAAVPALKRGGGYIINISSLAGTNFFA--------------------------------------G 149 (237)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHCCeEEEEECChhhccCCC--------------------------------------C
Confidence 77888999998888776532 2446899999976542110 0
Q ss_pred CchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCc
Q psy17528 270 PNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDV 344 (366)
Q Consensus 270 ~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~ 344 (366)
...|..+|+..+.+.+... .+++++++||+.+.++.....+. ......
T Consensus 150 ~~~y~~sk~a~~~~~~~~~~~~~~~gi~v~~v~pg~~~t~~~~~~~~---------------------------~~~~~~ 202 (237)
T PRK07326 150 GAAYNASKFGLVGFSEAAMLDLRQYGIKVSTIMPGSVATHFNGHTPS---------------------------EKDAWK 202 (237)
T ss_pred CchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeccccCcccccccc---------------------------hhhhcc
Confidence 1579999998888777653 68999999999987653211000 000113
Q ss_pred ccHHHHHHHHHHHHHhhh
Q psy17528 345 VPGDRVINAMAALAWYFL 362 (366)
Q Consensus 345 v~vdDva~ai~~~~~~~~ 362 (366)
+..+|++++++.++..+.
T Consensus 203 ~~~~d~a~~~~~~l~~~~ 220 (237)
T PRK07326 203 IQPEDIAQLVLDLLKMPP 220 (237)
T ss_pred CCHHHHHHHHHHHHhCCc
Confidence 678999999999887764
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.1e-14 Score=132.89 Aligned_cols=162 Identities=15% Similarity=0.144 Sum_probs=116.2
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+++||||||+|+||++++++|++.| .+|++++|+... .+.+.+.
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G---~~v~~~~r~~~~---~~~~~~~------------------------------ 45 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKG---HNVIAGVQIAPQ---VTALRAE------------------------------ 45 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHH------------------------------
Confidence 4689999999999999999999998 889999997431 1111111
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-CcCEEEEcCcccCh-------hhhHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-QTTIIFHIAATVRF-------DEHIRTAYNINVK 199 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-~~d~Vih~a~~~~~-------~~~~~~~~~~nv~ 199 (366)
......++.++.+|+.+.+ .+..++. ++|+||||||.... ...++..+++|+.
T Consensus 46 -------------~~~~~~~~~~~~~D~~~~~------~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~ 106 (257)
T PRK09291 46 -------------AARRGLALRVEKLDLTDAI------DRAQAAEWDVDVLLNNAGIGEAGAVVDIPVELVRELFETNVF 106 (257)
T ss_pred -------------HHhcCCcceEEEeeCCCHH------HHHHHhcCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhH
Confidence 0011235788999999976 6777665 89999999996421 2345667888988
Q ss_pred HHHHHHHHH----HhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHH
Q psy17528 200 GTQTILALA----KRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTL 275 (366)
Q Consensus 200 ~~~~ll~~a----~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~ 275 (366)
++..+.+.+ .+. +.++||++||..+.... | ....|+.
T Consensus 107 ~~~~~~~~~~~~~~~~-~~~~iv~~SS~~~~~~~----------~----------------------------~~~~Y~~ 147 (257)
T PRK09291 107 GPLELTQGFVRKMVAR-GKGKVVFTSSMAGLITG----------P----------------------------FTGAYCA 147 (257)
T ss_pred HHHHHHHHHHHHHHhc-CCceEEEEcChhhccCC----------C----------------------------CcchhHH
Confidence 877665543 333 45799999997543211 0 1167999
Q ss_pred HHHHHHHHHHHhc-----CCCCEEEEecCcccc
Q psy17528 276 TKATAEDLVRQVG-----HELPICVLRPSIVFP 303 (366)
Q Consensus 276 sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G 303 (366)
+|...|.+++... .+++++++||+.+..
T Consensus 148 sK~a~~~~~~~l~~~~~~~gi~~~~v~pg~~~t 180 (257)
T PRK09291 148 SKHALEAIAEAMHAELKPFGIQVATVNPGPYLT 180 (257)
T ss_pred HHHHHHHHHHHHHHHHHhcCcEEEEEecCcccc
Confidence 9999998876543 589999999998754
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.1e-14 Score=132.54 Aligned_cols=211 Identities=15% Similarity=0.140 Sum_probs=139.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||++++++|++.| ++|++++|+... .+.+.+.+.
T Consensus 8 ~~~k~vlVtGas~giG~~ia~~l~~~G---~~V~~~~r~~~~---~~~~~~~~~-------------------------- 55 (278)
T PRK08277 8 LKGKVAVITGGGGVLGGAMAKELARAG---AKVAILDRNQEK---AEAVVAEIK-------------------------- 55 (278)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHHHH--------------------------
Confidence 568999999999999999999999998 789999987421 112211111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh------------
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF------------ 186 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~------------ 186 (366)
....++.++.+|+.+.+ .+..+++ .+|++||+||....
T Consensus 56 -----------------~~~~~~~~~~~Dl~~~~------~v~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~ 112 (278)
T PRK08277 56 -----------------AAGGEALAVKADVLDKE------SLEQARQQILEDFGPCDILINGAGGNHPKATTDNEFHELI 112 (278)
T ss_pred -----------------hcCCeEEEEECCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCccccccccccccc
Confidence 01236788999999876 5554443 68999999995321
Q ss_pred ----------hhhHHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhc
Q psy17528 187 ----------DEHIRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHA 253 (366)
Q Consensus 187 ----------~~~~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~ 253 (366)
...++..+++|+.+...+++.+.+. .+..+||++||...+....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~----------------------- 169 (278)
T PRK08277 113 EPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRKGGNIINISSMNAFTPLT----------------------- 169 (278)
T ss_pred ccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhcCCCC-----------------------
Confidence 2345678889999888766554321 2446899999986653211
Q ss_pred chHHHHhhhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhc
Q psy17528 254 SDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGT 328 (366)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (366)
....|+.+|...+.+++.+. +++++++++||.|.++..........+.. .........
T Consensus 170 ---------------~~~~Y~~sK~a~~~l~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~~~~~~--~~~~~~~~~ 232 (278)
T PRK08277 170 ---------------KVPAYSAAKAAISNFTQWLAVHFAKVGIRVNAIAPGFFLTEQNRALLFNEDGSL--TERANKILA 232 (278)
T ss_pred ---------------CCchhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeccCcCcchhhhhccccccc--hhHHHHHhc
Confidence 01679999999999887765 68999999999999875321100000000 011111111
Q ss_pred CcceeecCCCCcccCcccHHHHHHHHHHHHHh
Q psy17528 329 GLIRVVQTDPNISMDVVPGDRVINAMAALAWY 360 (366)
Q Consensus 329 g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~ 360 (366)
. ....-+...+|+|++++.++..
T Consensus 233 ~---------~p~~r~~~~~dva~~~~~l~s~ 255 (278)
T PRK08277 233 H---------TPMGRFGKPEELLGTLLWLADE 255 (278)
T ss_pred c---------CCccCCCCHHHHHHHHHHHcCc
Confidence 1 1123467789999999998765
|
|
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.8e-14 Score=131.57 Aligned_cols=206 Identities=13% Similarity=0.097 Sum_probs=133.9
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+++++||||+|+||++++++|++.| +.|++..+.... ..+.+.+. +..
T Consensus 2 ~~~~lVtG~~~~iG~~~a~~l~~~G---~~vv~~~~~~~~--~~~~~~~~--------l~~------------------- 49 (248)
T PRK06123 2 RKVMIITGASRGIGAATALLAAERG---YAVCLNYLRNRD--AAEAVVQA--------IRR------------------- 49 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC---CeEEEecCCCHH--HHHHHHHH--------HHh-------------------
Confidence 4689999999999999999999998 667666544211 11111111 111
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh--------hhhHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF--------DEHIRT 192 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~--------~~~~~~ 192 (366)
...++.++.+|+.+.+ .+.+++. .+|+|||+||.... ..++..
T Consensus 50 ----------------~~~~~~~~~~Dl~~~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~ 107 (248)
T PRK06123 50 ----------------QGGEALAVAADVADEA------DVLRLFEAVDRELGRLDALVNNAGILEAQMRLEQMDAARLTR 107 (248)
T ss_pred ----------------CCCcEEEEEeccCCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCChhhCCHHHHHH
Confidence 1235778899999876 5665554 57999999997421 234567
Q ss_pred HHHHHHHHHHHHHHHHHhc----C--CCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 193 AYNINVKGTQTILALAKRM----K--GLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 193 ~~~~nv~~~~~ll~~a~~~----~--~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
.+++|+.++..+++.+.+. . ...++|++||..+.... +.
T Consensus 108 ~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~----------~~------------------------- 152 (248)
T PRK06123 108 IFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLGS----------PG------------------------- 152 (248)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcCCC----------CC-------------------------
Confidence 8999999998887766532 0 12469999997543111 00
Q ss_pred CCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcc
Q psy17528 267 GGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNIS 341 (366)
Q Consensus 267 ~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~ 341 (366)
....|+.+|...|.+++.+. ++++++++||+.++++...... . ...+.......+ .
T Consensus 153 --~~~~Y~~sKaa~~~~~~~la~~~~~~~i~v~~i~pg~v~~~~~~~~~-----~---~~~~~~~~~~~p---------~ 213 (248)
T PRK06123 153 --EYIDYAASKGAIDTMTIGLAKEVAAEGIRVNAVRPGVIYTEIHASGG-----E---PGRVDRVKAGIP---------M 213 (248)
T ss_pred --CccchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCchhhccC-----C---HHHHHHHHhcCC---------C
Confidence 00359999999999887664 5899999999999998542110 0 111111111111 1
Q ss_pred cCcccHHHHHHHHHHHHHhh
Q psy17528 342 MDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 342 ~~~v~vdDva~ai~~~~~~~ 361 (366)
.-+.+++|++++++.++...
T Consensus 214 ~~~~~~~d~a~~~~~l~~~~ 233 (248)
T PRK06123 214 GRGGTAEEVARAILWLLSDE 233 (248)
T ss_pred CCCcCHHHHHHHHHHHhCcc
Confidence 11347899999999887653
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.7e-14 Score=131.87 Aligned_cols=203 Identities=15% Similarity=0.047 Sum_probs=134.8
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
|+|+||||+|+||++++++|++.| .+|++++|+... .+.+.+ .+..
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g---~~V~~~~r~~~~---~~~~~~--------~l~~-------------------- 46 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREG---WRLALADVNEEG---GEETLK--------LLRE-------------------- 46 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHH--------HHHh--------------------
Confidence 479999999999999999999998 789999887432 111111 1111
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIRTAY 194 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~~~~ 194 (366)
...++.++.+|+.+.+ .+..+++ ++|+|||+||.... ...++..+
T Consensus 47 ---------------~~~~~~~~~~D~~~~~------~~~~~~~~i~~~~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~ 105 (270)
T PRK05650 47 ---------------AGGDGFYQRCDVRDYS------QLTALAQACEEKWGGIDVIVNNAGVASGGFFEELSLEDWDWQI 105 (270)
T ss_pred ---------------cCCceEEEEccCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHH
Confidence 1246778899999876 5555443 68999999997531 23456678
Q ss_pred HHHHHHHHHHHHHH----HhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCC
Q psy17528 195 NINVKGTQTILALA----KRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKP 270 (366)
Q Consensus 195 ~~nv~~~~~ll~~a----~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (366)
++|+.++..+.+.+ .+. +..++|++||..++.... ..
T Consensus 106 ~~n~~~~~~~~~~~~~~~~~~-~~~~iv~vsS~~~~~~~~--------------------------------------~~ 146 (270)
T PRK05650 106 AINLMGVVKGCKAFLPLFKRQ-KSGRIVNIASMAGLMQGP--------------------------------------AM 146 (270)
T ss_pred HHccHHHHHHHHHHHHHHHhC-CCCEEEEECChhhcCCCC--------------------------------------Cc
Confidence 89988877766654 343 567899999986542211 11
Q ss_pred chHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcc
Q psy17528 271 NSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVV 345 (366)
Q Consensus 271 ~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v 345 (366)
..|+.+|...+.+.+.+. .++++++++|+.+.++........ ............ ...++
T Consensus 147 ~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~---~~~~~~~~~~~~-------------~~~~~ 210 (270)
T PRK05650 147 SSYNVAKAGVVALSETLLVELADDEIGVHVVCPSFFQTNLLDSFRGP---NPAMKAQVGKLL-------------EKSPI 210 (270)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccccCcccccccC---chhHHHHHHHHh-------------hcCCC
Confidence 679999998766665544 689999999999987654321110 010011111111 12357
Q ss_pred cHHHHHHHHHHHHHhh
Q psy17528 346 PGDRVINAMAALAWYF 361 (366)
Q Consensus 346 ~vdDva~ai~~~~~~~ 361 (366)
.++|+|++++.+++..
T Consensus 211 ~~~~vA~~i~~~l~~~ 226 (270)
T PRK05650 211 TAADIADYIYQQVAKG 226 (270)
T ss_pred CHHHHHHHHHHHHhCC
Confidence 8999999999988764
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-14 Score=140.68 Aligned_cols=175 Identities=15% Similarity=0.149 Sum_probs=119.9
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++|+||||+|+||.+++++|++.| .+|+++.|+... ..+... .
T Consensus 24 l~~k~vlITGasggIG~~~a~~L~~~G---~~Vv~~~R~~~~------~~~~~~---------~---------------- 69 (315)
T PRK06196 24 LSGKTAIVTGGYSGLGLETTRALAQAG---AHVIVPARRPDV------AREALA---------G---------------- 69 (315)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHH------HHHHHH---------H----------------
Confidence 567999999999999999999999998 789999997431 111000 0
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-----hhhHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-----DEHIRTA 193 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-----~~~~~~~ 193 (366)
. ..+.++.+|+++.+ .+..+++ ++|+||||||.... ...++..
T Consensus 70 ---------------l----~~v~~~~~Dl~d~~------~v~~~~~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~ 124 (315)
T PRK06196 70 ---------------I----DGVEVVMLDLADLE------SVRAFAERFLDSGRRIDILINNAGVMACPETRVGDGWEAQ 124 (315)
T ss_pred ---------------h----hhCeEEEccCCCHH------HHHHHHHHHHhcCCCCCEEEECCCCCCCCCccCCccHHHH
Confidence 0 13678899999876 5655553 58999999996421 2345677
Q ss_pred HHHHHHHHHHHHHHH----HhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCC
Q psy17528 194 YNINVKGTQTILALA----KRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGK 269 (366)
Q Consensus 194 ~~~nv~~~~~ll~~a----~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (366)
+++|+.+...+.+.+ .+. +..++|++||...........+..+..+. ..
T Consensus 125 ~~vN~~g~~~l~~~ll~~l~~~-~~~~iV~vSS~~~~~~~~~~~~~~~~~~~--------------------------~~ 177 (315)
T PRK06196 125 FATNHLGHFALVNLLWPALAAG-AGARVVALSSAGHRRSPIRWDDPHFTRGY--------------------------DK 177 (315)
T ss_pred HHHhhHHHHHHHHHHHHHHHhc-CCCeEEEECCHHhccCCCCccccCccCCC--------------------------Ch
Confidence 899999976666544 333 44699999997543211111110001111 01
Q ss_pred CchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCC
Q psy17528 270 PNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQ 306 (366)
Q Consensus 270 ~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~ 306 (366)
...|+.+|...+.+.+... +|+.+++++||.|.++..
T Consensus 178 ~~~Y~~SK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~t~~~ 219 (315)
T PRK06196 178 WLAYGQSKTANALFAVHLDKLGKDQGVRAFSVHPGGILTPLQ 219 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCCcccCCcc
Confidence 1679999999998876654 689999999999998854
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3e-14 Score=132.24 Aligned_cols=206 Identities=10% Similarity=0.097 Sum_probs=135.1
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
|++++++||||+|+||.+++++|++.| .+|++..+... ....+.+.+ +.
T Consensus 1 ~~~k~~lVtG~s~giG~~~a~~l~~~G---~~vv~~~~~~~-~~~~~~~~~---------~~------------------ 49 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRLHKDG---FKVVAGCGPNS-PRRVKWLED---------QK------------------ 49 (246)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcC---CEEEEEcCCCh-HHHHHHHHH---------HH------------------
Confidence 467899999999999999999999998 67777554321 111111111 10
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
....++..+.+|+.+.+ .+..+++ ++|+|||+||... ....++
T Consensus 50 -----------------~~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~ 106 (246)
T PRK12938 50 -----------------ALGFDFIASEGNVGDWD------STKAAFDKVKAEVGEIDVLVNNAGITRDVVFRKMTREDWT 106 (246)
T ss_pred -----------------hcCCcEEEEEcCCCCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHH
Confidence 01245778899999876 5555443 6899999999753 124567
Q ss_pred HHHHHHHHHHHHHHHHHHh---cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKR---MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~---~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
..+++|+.++..+.+.+.+ ..+..++|++||....... .
T Consensus 107 ~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~--------------------------------------~ 148 (246)
T PRK12938 107 AVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQKGQ--------------------------------------F 148 (246)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEechhccCCC--------------------------------------C
Confidence 7889999997776665433 1255789999997543111 0
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
....|+.+|...+.+.+... .++++++++|+.+.++..... . ...+...... .....
T Consensus 149 ~~~~y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~~~t~~~~~~-------~--~~~~~~~~~~---------~~~~~ 210 (246)
T PRK12938 149 GQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKAI-------R--PDVLEKIVAT---------IPVRR 210 (246)
T ss_pred CChhHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEecccCCchhhhc-------C--hHHHHHHHhc---------CCccC
Confidence 11679999998888776544 689999999999987643211 0 1111111111 11234
Q ss_pred cccHHHHHHHHHHHHHhh
Q psy17528 344 VVPGDRVINAMAALAWYF 361 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~~ 361 (366)
+...+|++++++.++...
T Consensus 211 ~~~~~~v~~~~~~l~~~~ 228 (246)
T PRK12938 211 LGSPDEIGSIVAWLASEE 228 (246)
T ss_pred CcCHHHHHHHHHHHcCcc
Confidence 567899999999887654
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.4e-14 Score=134.21 Aligned_cols=161 Identities=16% Similarity=0.245 Sum_probs=120.3
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
..+++++|+||||+|+||++++++|.+.| .+|+++.|+....
T Consensus 5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G---~~v~~~~r~~~~~----------------------------------- 46 (260)
T PRK06523 5 LELAGKRALVTGGTKGIGAATVARLLEAG---ARVVTTARSRPDD----------------------------------- 46 (260)
T ss_pred cCCCCCEEEEECCCCchhHHHHHHHHHCC---CEEEEEeCChhhh-----------------------------------
Confidence 34678999999999999999999999998 7899999974310
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH-------hCcCEEEEcCcccC---------hh
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI-------SQTTIIFHIAATVR---------FD 187 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~-------~~~d~Vih~a~~~~---------~~ 187 (366)
....+.++.+|+.+.+ .+.+++ ..+|+|||+||... ..
T Consensus 47 --------------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~ 100 (260)
T PRK06523 47 --------------------LPEGVEFVAADLTTAE------GCAAVARAVLERLGGVDILVHVLGGSSAPAGGFAALTD 100 (260)
T ss_pred --------------------cCCceeEEecCCCCHH------HHHHHHHHHHHHcCCCCEEEECCcccccCCCCcccCCH
Confidence 1235778999999876 454433 35799999999532 12
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH----hcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhh
Q psy17528 188 EHIRTAYNINVKGTQTILALAK----RMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNE 263 (366)
Q Consensus 188 ~~~~~~~~~nv~~~~~ll~~a~----~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 263 (366)
..++..+++|+.++..+.+.+. +. +..++|++||....... +.+
T Consensus 101 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~ii~isS~~~~~~~--------~~~----------------------- 148 (260)
T PRK06523 101 EEWQDELNLNLLAAVRLDRALLPGMIAR-GSGVIIHVTSIQRRLPL--------PES----------------------- 148 (260)
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHhc-CCcEEEEEecccccCCC--------CCC-----------------------
Confidence 4567788999999877766543 32 44689999997654210 001
Q ss_pred cccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCC
Q psy17528 264 HIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQ 306 (366)
Q Consensus 264 ~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~ 306 (366)
...|+.+|...+.+++... .++.+++++||.|.++..
T Consensus 149 ------~~~Y~~sK~a~~~l~~~~a~~~~~~gi~v~~i~Pg~v~t~~~ 190 (260)
T PRK06523 149 ------TTAYAAAKAALSTYSKSLSKEVAPKGVRVNTVSPGWIETEAA 190 (260)
T ss_pred ------cchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccH
Confidence 1679999999998887765 589999999999998753
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.8e-14 Score=131.61 Aligned_cols=166 Identities=16% Similarity=0.198 Sum_probs=120.3
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
||+|+||||+|+||.+++++|++.| .+|++++|+.+.. +.+.+. +..
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G---~~Vi~~~r~~~~~---~~~~~~--------~~~------------------- 47 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAG---ARLYLAARDVERL---ERLADD--------LRA------------------- 47 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcC---CEEEEEeCCHHHH---HHHHHH--------HHH-------------------
Confidence 4789999999999999999999998 7899999975321 111111 100
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh----CcCEEEEcCcccCh-------hhhHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS----QTTIIFHIAATVRF-------DEHIRTAYNI 196 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~----~~d~Vih~a~~~~~-------~~~~~~~~~~ 196 (366)
....++.++.+|+.+.. ++..+++ .+|++||++|.... .......+++
T Consensus 48 ---------------~~~~~~~~~~~Dl~~~~------~~~~~~~~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~ 106 (243)
T PRK07102 48 ---------------RGAVAVSTHELDILDTA------SHAAFLDSLPALPDIVLIAVGTLGDQAACEADPALALREFRT 106 (243)
T ss_pred ---------------hcCCeEEEEecCCCChH------HHHHHHHHHhhcCCEEEECCcCCCCcccccCCHHHHHHHHHh
Confidence 01247889999999876 5665554 46999999986421 2234567889
Q ss_pred HHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchH
Q psy17528 197 NVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSY 273 (366)
Q Consensus 197 nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 273 (366)
|+.++..+++.+.+. .+.+++|++||....... + ....|
T Consensus 107 n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~----------~----------------------------~~~~Y 148 (243)
T PRK07102 107 NFEGPIALLTLLANRFEARGSGTIVGISSVAGDRGR----------A----------------------------SNYVY 148 (243)
T ss_pred hhHHHHHHHHHHHHHHHhCCCCEEEEEecccccCCC----------C----------------------------CCccc
Confidence 999999888876542 245789999997543111 0 01579
Q ss_pred HHHHHHHHHHHHHhc-----CCCCEEEEecCccccCC
Q psy17528 274 TLTKATAEDLVRQVG-----HELPICVLRPSIVFPTL 305 (366)
Q Consensus 274 ~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~ 305 (366)
+.+|...+.+.+... .++++++++|+.++++.
T Consensus 149 ~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~v~t~~ 185 (243)
T PRK07102 149 GSAKAALTAFLSGLRNRLFKSGVHVLTVKPGFVRTPM 185 (243)
T ss_pred HHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccChh
Confidence 999999988887764 68999999999998863
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.2e-14 Score=134.05 Aligned_cols=199 Identities=12% Similarity=0.115 Sum_probs=138.2
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||++++++|++.| ++|++++|+....
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g---~~v~~~~r~~~~~------------------------------------- 43 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAG---ATVVVCGRRAPET------------------------------------- 43 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCChhhh-------------------------------------
Confidence 568999999999999999999999998 7899999974310
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
. ...++.++.+|+.+.+ .+.+++. .+|+||||||... ....+.
T Consensus 44 ---------------~--~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~ 100 (252)
T PRK07856 44 ---------------V--DGRPAEFHAADVRDPD------QVAALVDAIVERHGRLDVLVNNAGGSPYALAAEASPRFHE 100 (252)
T ss_pred ---------------h--cCCceEEEEccCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHH
Confidence 0 1246788999999876 5555553 4699999999642 123456
Q ss_pred HHHHHHHHHHHHHHHHHHhc----CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 192 TAYNINVKGTQTILALAKRM----KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~----~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
..+++|+.++..+++.+... .+..+||++||.......
T Consensus 101 ~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~-------------------------------------- 142 (252)
T PRK07856 101 KIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRRPS-------------------------------------- 142 (252)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccCCCC--------------------------------------
Confidence 78899999999998876541 134689999997654211
Q ss_pred CCCchHHHHHHHHHHHHHHhc----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
+....|+.+|...|.+++... ..+.++.++||.|.++..... + .. ........... ....
T Consensus 143 ~~~~~Y~~sK~a~~~l~~~la~e~~~~i~v~~i~Pg~v~t~~~~~~--~----~~-~~~~~~~~~~~---------~~~~ 206 (252)
T PRK07856 143 PGTAAYGAAKAGLLNLTRSLAVEWAPKVRVNAVVVGLVRTEQSELH--Y----GD-AEGIAAVAATV---------PLGR 206 (252)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhcCCeEEEEEEeccccChHHhhh--c----cC-HHHHHHHhhcC---------CCCC
Confidence 012679999999999998766 348899999999987643210 0 00 00111111111 1233
Q ss_pred cccHHHHHHHHHHHHHhh
Q psy17528 344 VVPGDRVINAMAALAWYF 361 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~~ 361 (366)
+...+|++++++.++...
T Consensus 207 ~~~p~~va~~~~~L~~~~ 224 (252)
T PRK07856 207 LATPADIAWACLFLASDL 224 (252)
T ss_pred CcCHHHHHHHHHHHcCcc
Confidence 567899999999887643
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.3e-14 Score=132.01 Aligned_cols=207 Identities=13% Similarity=0.145 Sum_probs=135.2
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||.+++++|.+.| ++|++..+.... ..+.... .+..
T Consensus 2 ~~~k~~lItGas~gIG~~ia~~l~~~G---~~v~~~~~~~~~--~~~~~~~--------~~~~----------------- 51 (252)
T PRK12747 2 LKGKVALVTGASRGIGRAIAKRLANDG---ALVAIHYGNRKE--EAEETVY--------EIQS----------------- 51 (252)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC---CeEEEEcCCCHH--HHHHHHH--------HHHh-----------------
Confidence 457999999999999999999999998 778776543211 1111111 1111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH-------------hCcCEEEEcCcccCh------
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI-------------SQTTIIFHIAATVRF------ 186 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~-------------~~~d~Vih~a~~~~~------ 186 (366)
....+..+.+|+.+.+ .+..++ ..+|++|||||....
T Consensus 52 ------------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~~~g~~~id~lv~~Ag~~~~~~~~~~ 107 (252)
T PRK12747 52 ------------------NGGSAFSIGANLESLH------GVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEET 107 (252)
T ss_pred ------------------cCCceEEEecccCCHH------HHHHHHHHHHHHhhhhcCCCCCCEEEECCCcCCCCCcccC
Confidence 1234567788998764 332222 158999999996421
Q ss_pred -hhhHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhc
Q psy17528 187 -DEHIRTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEH 264 (366)
Q Consensus 187 -~~~~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 264 (366)
...++..+++|+.++..+++.+.+. ....+||++||........
T Consensus 108 ~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~---------------------------------- 153 (252)
T PRK12747 108 TEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRISLP---------------------------------- 153 (252)
T ss_pred CHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCcccccCCC----------------------------------
Confidence 2345778899999999998876542 2335899999986542210
Q ss_pred ccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCC
Q psy17528 265 IIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPN 339 (366)
Q Consensus 265 ~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~ 339 (366)
....|+.+|+..+.+++... ++++++++.||.|.++..... . .. ......... ..
T Consensus 154 ----~~~~Y~~sKaa~~~~~~~la~e~~~~girvn~v~Pg~v~t~~~~~~---~---~~--~~~~~~~~~--------~~ 213 (252)
T PRK12747 154 ----DFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFIKTDMNAEL---L---SD--PMMKQYATT--------IS 213 (252)
T ss_pred ----CchhHHHHHHHHHHHHHHHHHHHhHcCCEEEEEecCCccCchhhhc---c---cC--HHHHHHHHh--------cC
Confidence 01679999999998887765 689999999999988743210 0 00 001111110 01
Q ss_pred cccCcccHHHHHHHHHHHHHh
Q psy17528 340 ISMDVVPGDRVINAMAALAWY 360 (366)
Q Consensus 340 ~~~~~v~vdDva~ai~~~~~~ 360 (366)
....+...+|+|++++.++..
T Consensus 214 ~~~~~~~~~dva~~~~~l~s~ 234 (252)
T PRK12747 214 AFNRLGEVEDIADTAAFLASP 234 (252)
T ss_pred cccCCCCHHHHHHHHHHHcCc
Confidence 123478899999999988764
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.8e-14 Score=132.07 Aligned_cols=207 Identities=14% Similarity=0.115 Sum_probs=138.4
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
.++++++||||+|+||++++++|++.| ++|+++.|+... ..+.+.+. +.
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g---~~v~~~~~~~~~--~~~~~~~~--------~~------------------ 51 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADG---FAVAVNYAGSAA--AADELVAE--------IE------------------ 51 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEecCCCHH--HHHHHHHH--------HH------------------
Confidence 357899999999999999999999998 677777765421 11111111 10
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~ 191 (366)
....++.++.+|+.+.+ .+.++++ ++|+|||+||.... ...++
T Consensus 52 -----------------~~~~~~~~~~~Dl~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~ 108 (245)
T PRK12937 52 -----------------AAGGRAIAVQADVADAA------AVTRLFDAAETAFGRIDVLVNNAGVMPLGTIADFDLEDFD 108 (245)
T ss_pred -----------------hcCCeEEEEECCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHH
Confidence 11246888999999876 5666554 68999999997431 23456
Q ss_pred HHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCC
Q psy17528 192 TAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKP 270 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (366)
..+++|+.++..+++.+.+. ....++|++||....... +..
T Consensus 109 ~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~--------------------------------------~~~ 150 (245)
T PRK12937 109 RTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIALPL--------------------------------------PGY 150 (245)
T ss_pred HHHhhhchHHHHHHHHHHHHhccCcEEEEEeeccccCCC--------------------------------------CCC
Confidence 78899999999988876542 223589999986543211 011
Q ss_pred chHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcc
Q psy17528 271 NSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVV 345 (366)
Q Consensus 271 ~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v 345 (366)
..|+.+|...+.+++... .++.+++++|+.+-++.... ... ........... ...-+.
T Consensus 151 ~~Y~~sK~a~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~------~~~--~~~~~~~~~~~---------~~~~~~ 213 (245)
T PRK12937 151 GPYAASKAAVEGLVHVLANELRGRGITVNAVAPGPVATELFFN------GKS--AEQIDQLAGLA---------PLERLG 213 (245)
T ss_pred chhHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCccCchhcc------cCC--HHHHHHHHhcC---------CCCCCC
Confidence 679999999999887754 57999999999887653210 000 11122222211 122355
Q ss_pred cHHHHHHHHHHHHHhh
Q psy17528 346 PGDRVINAMAALAWYF 361 (366)
Q Consensus 346 ~vdDva~ai~~~~~~~ 361 (366)
+.+|++++++.++..+
T Consensus 214 ~~~d~a~~~~~l~~~~ 229 (245)
T PRK12937 214 TPEEIAAAVAFLAGPD 229 (245)
T ss_pred CHHHHHHHHHHHcCcc
Confidence 7899999999888654
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.4e-14 Score=132.83 Aligned_cols=207 Identities=17% Similarity=0.127 Sum_probs=138.2
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||.+++++|++.| ++|++++|+... .+.+.+. ++.
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G---~~v~~~~r~~~~---~~~~~~~--------~~~----------------- 52 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREG---AKVVVGARRQAE---LDQLVAE--------IRA----------------- 52 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHH--------HHh-----------------
Confidence 467899999999999999999999998 789999997532 1111111 111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh--------hhhH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF--------DEHI 190 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~--------~~~~ 190 (366)
...++.++.+|+.+.+ .+..+++ .+|++||+||.... ...+
T Consensus 53 ------------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~ 108 (254)
T PRK07478 53 ------------------EGGEAVALAGDVRDEA------YAKALVALAVERFGGLDIAFNNAGTLGEMGPVAEMSLEGW 108 (254)
T ss_pred ------------------cCCcEEEEEcCCCCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCCChhhCCHHHH
Confidence 1246788999999876 5555553 68999999996421 1345
Q ss_pred HHHHHHHHHHHHHHHHHHH----hcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 191 RTAYNINVKGTQTILALAK----RMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~----~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
+..+++|+.+...+.+.+. +. +..++|++||...+....
T Consensus 109 ~~~~~~N~~~~~~~~~~~~~~l~~~-~~~~iv~~sS~~~~~~~~------------------------------------ 151 (254)
T PRK07478 109 RETLATNLTSAFLGAKHQIPAMLAR-GGGSLIFTSTFVGHTAGF------------------------------------ 151 (254)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhc-CCceEEEEechHhhccCC------------------------------------
Confidence 6788999988777766443 33 456899999976542110
Q ss_pred CCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcc
Q psy17528 267 GGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNIS 341 (366)
Q Consensus 267 ~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~ 341 (366)
+....|+.+|...+.+++... +++.+++++||.|-.+....... . ... ....... ...
T Consensus 152 -~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~----~---~~~-~~~~~~~--------~~~ 214 (254)
T PRK07478 152 -PGMAAYAASKAGLIGLTQVLAAEYGAQGIRVNALLPGGTDTPMGRAMGD----T---PEA-LAFVAGL--------HAL 214 (254)
T ss_pred -CCcchhHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCcccCcccccccC----C---HHH-HHHHHhc--------CCC
Confidence 001679999999999887765 57999999999997663221100 0 000 0111100 112
Q ss_pred cCcccHHHHHHHHHHHHHhh
Q psy17528 342 MDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 342 ~~~v~vdDva~ai~~~~~~~ 361 (366)
..+...+|++++++.++..+
T Consensus 215 ~~~~~~~~va~~~~~l~s~~ 234 (254)
T PRK07478 215 KRMAQPEEIAQAALFLASDA 234 (254)
T ss_pred CCCcCHHHHHHHHHHHcCch
Confidence 34678999999999988654
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.1e-14 Score=129.57 Aligned_cols=205 Identities=14% Similarity=0.174 Sum_probs=137.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEE-EcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILL-IRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~-~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
+++++|+||||+|+||.+++++|++.| .+|+++ .|+... .+.+.+.+.
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g---~~v~~~~~r~~~~---~~~~~~~~~------------------------- 51 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEG---AKVVIAYDINEEA---AQELLEEIK------------------------- 51 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEcCCCHHH---HHHHHHHHH-------------------------
Confidence 457899999999999999999999998 778887 776431 111111110
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHI 190 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~ 190 (366)
....++.++.+|+++++ .+..++. ++|+|||++|.... ...+
T Consensus 52 ------------------~~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~ 107 (247)
T PRK05565 52 ------------------EEGGDAIAVKADVSSEE------DVENLVEQIVEKFGKIDILVNNAGISNFGLVTDMTDEEW 107 (247)
T ss_pred ------------------hcCCeEEEEECCCCCHH------HHHHHHHHHHHHhCCCCEEEECCCcCCCCChhhCCHHHH
Confidence 01246889999999976 5555553 68999999997521 2345
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 191 RTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
+..+++|+.+...+++.+... .+.++||++||...+....
T Consensus 108 ~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~~~------------------------------------- 150 (247)
T PRK05565 108 DRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISSIWGLIGAS------------------------------------- 150 (247)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCHhhccCCC-------------------------------------
Confidence 678899999988887776532 2456899999975542210
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
....|+.+|...+.+++... .+++++++||+.+.++...... . ........ . ....
T Consensus 151 -~~~~y~~sK~a~~~~~~~~~~~~~~~gi~~~~v~pg~v~t~~~~~~~------~---~~~~~~~~-----~----~~~~ 211 (247)
T PRK05565 151 -CEVLYSASKGAVNAFTKALAKELAPSGIRVNAVAPGAIDTEMWSSFS------E---EDKEGLAE-----E----IPLG 211 (247)
T ss_pred -CccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCccCccccccC------h---HHHHHHHh-----c----CCCC
Confidence 01579999988877776654 6899999999998765432211 0 00000111 0 1123
Q ss_pred CcccHHHHHHHHHHHHHhh
Q psy17528 343 DVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~ 361 (366)
.+...+|++++++.++...
T Consensus 212 ~~~~~~~va~~~~~l~~~~ 230 (247)
T PRK05565 212 RLGKPEEIAKVVLFLASDD 230 (247)
T ss_pred CCCCHHHHHHHHHHHcCCc
Confidence 4678899999999888654
|
|
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.6e-14 Score=130.11 Aligned_cols=199 Identities=13% Similarity=0.096 Sum_probs=138.4
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||.+++++|++.| ++|++++|+....
T Consensus 3 l~~k~~lVtGas~~iG~~ia~~l~~~G---~~v~~~~r~~~~~------------------------------------- 42 (235)
T PRK06550 3 FMTKTVLITGAASGIGLAQARAFLAQG---AQVYGVDKQDKPD------------------------------------- 42 (235)
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHHCC---CEEEEEeCCcccc-------------------------------------
Confidence 567899999999999999999999998 7898988864311
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccC--------hhhhHHHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVR--------FDEHIRTAYNIN 197 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~--------~~~~~~~~~~~n 197 (366)
...++.++.+|+.+. ...+.+.+..+|+|||+||... ....++..+++|
T Consensus 43 ------------------~~~~~~~~~~D~~~~-----~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n 99 (235)
T PRK06550 43 ------------------LSGNFHFLQLDLSDD-----LEPLFDWVPSVDILCNTAGILDDYKPLLDTSLEEWQHIFDTN 99 (235)
T ss_pred ------------------cCCcEEEEECChHHH-----HHHHHHhhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHh
Confidence 123577889999875 1244444567899999999531 123456788999
Q ss_pred HHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHH
Q psy17528 198 VKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYT 274 (366)
Q Consensus 198 v~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~ 274 (366)
+.++..+++.+.+. .+..+||++||...+... .....|+
T Consensus 100 ~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~--------------------------------------~~~~~Y~ 141 (235)
T PRK06550 100 LTSTFLLTRAYLPQMLERKSGIIINMCSIASFVAG--------------------------------------GGGAAYT 141 (235)
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCC--------------------------------------CCCcccH
Confidence 99999988876532 234589999998654221 0115799
Q ss_pred HHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHH
Q psy17528 275 LTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDR 349 (366)
Q Consensus 275 ~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdD 349 (366)
.+|...+.+.+... +++++++++|+.|.++..... +.. ..+....... .....+...+|
T Consensus 142 ~sK~a~~~~~~~la~~~~~~gi~v~~v~pg~v~t~~~~~~--~~~-----~~~~~~~~~~---------~~~~~~~~~~~ 205 (235)
T PRK06550 142 ASKHALAGFTKQLALDYAKDGIQVFGIAPGAVKTPMTAAD--FEP-----GGLADWVARE---------TPIKRWAEPEE 205 (235)
T ss_pred HHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCccCcccccc--cCc-----hHHHHHHhcc---------CCcCCCCCHHH
Confidence 99998888776655 589999999999988754211 100 0111111111 11344778899
Q ss_pred HHHHHHHHHHhh
Q psy17528 350 VINAMAALAWYF 361 (366)
Q Consensus 350 va~ai~~~~~~~ 361 (366)
+|++++.++...
T Consensus 206 ~a~~~~~l~s~~ 217 (235)
T PRK06550 206 VAELTLFLASGK 217 (235)
T ss_pred HHHHHHHHcChh
Confidence 999999988543
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.6e-14 Score=131.95 Aligned_cols=162 Identities=15% Similarity=0.170 Sum_probs=119.7
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+++++||||+|+||.+++++|++.| .+|++++|+.. ++.++. .
T Consensus 1 ~~~vlItGas~giG~~la~~L~~~G---~~V~~~~r~~~------~~~~~~---------~------------------- 43 (240)
T PRK06101 1 MTAVLITGATSGIGKQLALDYAKQG---WQVIACGRNQS------VLDELH---------T------------------- 43 (240)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhCC---CEEEEEECCHH------HHHHHH---------H-------------------
Confidence 4789999999999999999999998 78999999742 111110 0
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhC----cCEEEEcCcccC-------hhhhHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQ----TTIIFHIAATVR-------FDEHIRTAYNI 196 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~----~d~Vih~a~~~~-------~~~~~~~~~~~ 196 (366)
...++.++.+|+++.+ ++.++++. .|.+||+||... ....++..+++
T Consensus 44 ----------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~d~~i~~ag~~~~~~~~~~~~~~~~~~~~~ 101 (240)
T PRK06101 44 ----------------QSANIFTLAFDVTDHP------GTKAALSQLPFIPELWIFNAGDCEYMDDGKVDATLMARVFNV 101 (240)
T ss_pred ----------------hcCCCeEEEeeCCCHH------HHHHHHHhcccCCCEEEEcCcccccCCCCCCCHHHHHHHHHH
Confidence 0135678899999977 77777764 589999998532 12345678999
Q ss_pred HHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHH
Q psy17528 197 NVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTL 275 (366)
Q Consensus 197 nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~ 275 (366)
|+.++..+++.+... ...+++|++||....... | ....|+.
T Consensus 102 n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~----------~----------------------------~~~~Y~a 143 (240)
T PRK06101 102 NVLGVANCIEGIQPHLSCGHRVVIVGSIASELAL----------P----------------------------RAEAYGA 143 (240)
T ss_pred HHHHHHHHHHHHHHhhhcCCeEEEEechhhccCC----------C----------------------------CCchhhH
Confidence 999999999987752 233579999886533110 0 1167999
Q ss_pred HHHHHHHHHHHhc-----CCCCEEEEecCccccCCC
Q psy17528 276 TKATAEDLVRQVG-----HELPICVLRPSIVFPTLQ 306 (366)
Q Consensus 276 sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~ 306 (366)
+|...+.+.+.+. ++++++++|||.|+++..
T Consensus 144 sK~a~~~~~~~l~~e~~~~gi~v~~v~pg~i~t~~~ 179 (240)
T PRK06101 144 SKAAVAYFARTLQLDLRPKGIEVVTVFPGFVATPLT 179 (240)
T ss_pred HHHHHHHHHHHHHHHHHhcCceEEEEeCCcCCCCCc
Confidence 9999999887654 689999999999998753
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.1e-14 Score=131.53 Aligned_cols=203 Identities=13% Similarity=0.130 Sum_probs=135.7
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
++++++||||+|+||++++++|++.| ++|++..+.... ..+.+.+.
T Consensus 4 ~~k~ilItGas~gIG~~la~~l~~~G---~~vv~~~~~~~~--~~~~~~~~----------------------------- 49 (253)
T PRK08642 4 SEQTVLVTGGSRGLGAAIARAFAREG---ARVVVNYHQSED--AAEALADE----------------------------- 49 (253)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCC---CeEEEEcCCCHH--HHHHHHHH-----------------------------
Confidence 46899999999999999999999998 777776554321 11111110
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------C-cCEEEEcCcccC-------------
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------Q-TTIIFHIAATVR------------- 185 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~-~d~Vih~a~~~~------------- 185 (366)
. ..++.++.+|+.+++ .+..+++ . +|++||+||...
T Consensus 50 --------------~---~~~~~~~~~D~~~~~------~~~~~~~~~~~~~g~~id~li~~ag~~~~~~~~~~~~~~~~ 106 (253)
T PRK08642 50 --------------L---GDRAIALQADVTDRE------QVQAMFATATEHFGKPITTVVNNALADFSFDGDARKKADDI 106 (253)
T ss_pred --------------h---CCceEEEEcCCCCHH------HHHHHHHHHHHHhCCCCeEEEECCCccccccccCCCCcccC
Confidence 1 146778999999876 5555553 2 899999998521
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhh
Q psy17528 186 FDEHIRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLN 262 (366)
Q Consensus 186 ~~~~~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 262 (366)
....+...+++|+.+...+++.+.+. .+..+++++||....... .+
T Consensus 107 ~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~---------~~---------------------- 155 (253)
T PRK08642 107 TWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTNLFQNPV---------VP---------------------- 155 (253)
T ss_pred CHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEECCccccCCC---------CC----------------------
Confidence 11345667899999999998877531 244689999986432110 01
Q ss_pred hcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCC
Q psy17528 263 EHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTD 337 (366)
Q Consensus 263 ~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~ 337 (366)
...|+.+|...|.+++.+. +++.++.++||.+..+.... . .. .... ......
T Consensus 156 -------~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~i~pG~v~t~~~~~---~---~~--~~~~-~~~~~~------- 212 (253)
T PRK08642 156 -------YHDYTTAKAALLGLTRNLAAELGPYGITVNMVSGGLLRTTDASA---A---TP--DEVF-DLIAAT------- 212 (253)
T ss_pred -------ccchHHHHHHHHHHHHHHHHHhCccCeEEEEEeecccCCchhhc---c---CC--HHHH-HHHHhc-------
Confidence 1679999999999998865 68999999999987653211 0 00 1111 111111
Q ss_pred CCcccCcccHHHHHHHHHHHHHhh
Q psy17528 338 PNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 338 ~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
.....+...+|++++++.++...
T Consensus 213 -~~~~~~~~~~~va~~~~~l~~~~ 235 (253)
T PRK08642 213 -TPLRKVTTPQEFADAVLFFASPW 235 (253)
T ss_pred -CCcCCCCCHHHHHHHHHHHcCch
Confidence 11234889999999999988754
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.8e-14 Score=131.28 Aligned_cols=207 Identities=13% Similarity=0.132 Sum_probs=141.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||++++++|++.| ++|+++.|+... .+.+.+. +..
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G---~~v~~~~r~~~~---~~~~~~~--------~~~----------------- 57 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAG---AHVLVNGRNAAT---LEAAVAA--------LRA----------------- 57 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcC---CeEEEEeCCHHH---HHHHHHH--------HHh-----------------
Confidence 468999999999999999999999998 799999997421 1111111 111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~ 191 (366)
...++.++.+|+.+.+ .+..+++ .+|+|||++|.... ...++
T Consensus 58 ------------------~~~~~~~~~~Dl~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~ 113 (256)
T PRK06124 58 ------------------AGGAAEALAFDIADEE------AVAAAFARIDAEHGRLDILVNNVGARDRRPLAELDDAAIR 113 (256)
T ss_pred ------------------cCCceEEEEccCCCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHH
Confidence 1245788999999876 5555553 46999999996421 23456
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
..+.+|+.++..+.+.+.+. .+..++|++||....... +
T Consensus 114 ~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~--------------------------------------~ 155 (256)
T PRK06124 114 ALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIAGQVAR--------------------------------------A 155 (256)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeechhccCC--------------------------------------C
Confidence 78899999998888765431 255789999997643211 0
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
....|+.+|...+.+++... .++++++++|+.+.++..... .. . ..+....... .....
T Consensus 156 ~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~---~~--~--~~~~~~~~~~---------~~~~~ 219 (256)
T PRK06124 156 GDAVYPAAKQGLTGLMRALAAEFGPHGITSNAIAPGYFATETNAAM---AA--D--PAVGPWLAQR---------TPLGR 219 (256)
T ss_pred CccHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEECCccCcchhhh---cc--C--hHHHHHHHhc---------CCCCC
Confidence 11679999999988887654 589999999999998753211 00 0 0111111111 11234
Q ss_pred cccHHHHHHHHHHHHHhh
Q psy17528 344 VVPGDRVINAMAALAWYF 361 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~~ 361 (366)
+++.+|++.+++.++...
T Consensus 220 ~~~~~~~a~~~~~l~~~~ 237 (256)
T PRK06124 220 WGRPEEIAGAAVFLASPA 237 (256)
T ss_pred CCCHHHHHHHHHHHcCcc
Confidence 789999999999988765
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.4e-14 Score=136.74 Aligned_cols=202 Identities=15% Similarity=0.146 Sum_probs=136.5
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++++|+||||+|+||.+++++|++.| .+|++++|+... .+.+.+. +.
T Consensus 5 ~l~~k~vlITGas~gIG~~la~~la~~G---~~Vvl~~R~~~~---l~~~~~~--------l~----------------- 53 (334)
T PRK07109 5 PIGRQVVVITGASAGVGRATARAFARRG---AKVVLLARGEEG---LEALAAE--------IR----------------- 53 (334)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEECCHHH---HHHHHHH--------HH-----------------
Confidence 3567899999999999999999999998 789999987421 1111111 11
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHI 190 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~ 190 (366)
....++.++.+|+.|.+ ++..+++ .+|++|||||.... ...+
T Consensus 54 ------------------~~g~~~~~v~~Dv~d~~------~v~~~~~~~~~~~g~iD~lInnAg~~~~~~~~~~~~~~~ 109 (334)
T PRK07109 54 ------------------AAGGEALAVVADVADAE------AVQAAADRAEEELGPIDTWVNNAMVTVFGPFEDVTPEEF 109 (334)
T ss_pred ------------------HcCCcEEEEEecCCCHH------HHHHHHHHHHHHCCCCCEEEECCCcCCCCchhhCCHHHH
Confidence 11246788999999976 5655543 68999999996421 2345
Q ss_pred HHHHHHHHHHHHHHHHH----HHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 191 RTAYNINVKGTQTILAL----AKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~----a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
+..+++|+.+...+.+. +.+. +..+||++||..++....
T Consensus 110 ~~~~~vN~~g~~~~~~~~l~~~~~~-~~g~iV~isS~~~~~~~~------------------------------------ 152 (334)
T PRK07109 110 RRVTEVTYLGVVHGTLAALRHMRPR-DRGAIIQVGSALAYRSIP------------------------------------ 152 (334)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEeCChhhccCCC------------------------------------
Confidence 66788887776665444 4433 456899999987653211
Q ss_pred CCCCchHHHHHHHHHHHHHHhc-------CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCC
Q psy17528 267 GGKPNSYTLTKATAEDLVRQVG-------HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPN 339 (366)
Q Consensus 267 ~~~~~~Y~~sK~~~E~~l~~~~-------~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~ 339 (366)
....|+.+|...+.+.+... .++.+++++|+.|.++... + ....... ...
T Consensus 153 --~~~~Y~asK~a~~~~~~~l~~el~~~~~~I~v~~v~Pg~v~T~~~~----~----------~~~~~~~-------~~~ 209 (334)
T PRK07109 153 --LQSAYCAAKHAIRGFTDSLRCELLHDGSPVSVTMVQPPAVNTPQFD----W----------ARSRLPV-------EPQ 209 (334)
T ss_pred --cchHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCccCchhh----h----------hhhhccc-------ccc
Confidence 01679999999888776543 3689999999998765321 0 0000000 011
Q ss_pred cccCcccHHHHHHHHHHHHHhh
Q psy17528 340 ISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 340 ~~~~~v~vdDva~ai~~~~~~~ 361 (366)
....+...+|+|++++.++.++
T Consensus 210 ~~~~~~~pe~vA~~i~~~~~~~ 231 (334)
T PRK07109 210 PVPPIYQPEVVADAILYAAEHP 231 (334)
T ss_pred CCCCCCCHHHHHHHHHHHHhCC
Confidence 1234678999999999999875
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.9e-14 Score=130.24 Aligned_cols=203 Identities=13% Similarity=0.120 Sum_probs=137.3
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
.++++||||+|+||++++++|++.| .+|+++.|+.. ...+.+...
T Consensus 2 ~k~vlItG~s~~iG~~la~~l~~~g---~~vi~~~r~~~--~~~~~~~~~------------------------------ 46 (245)
T PRK12824 2 KKIALVTGAKRGIGSAIARELLNDG---YRVIATYFSGN--DCAKDWFEE------------------------------ 46 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcC---CEEEEEeCCcH--HHHHHHHHH------------------------------
Confidence 3689999999999999999999998 78999999753 111111110
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIRTA 193 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~~~ 193 (366)
......++.++.+|+.+.+ .+.++++ .+|++||++|... ....+...
T Consensus 47 -------------~~~~~~~~~~~~~D~~~~~------~v~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~ 107 (245)
T PRK12824 47 -------------YGFTEDQVRLKELDVTDTE------ECAEALAEIEEEEGPVDILVNNAGITRDSVFKRMSHQEWNDV 107 (245)
T ss_pred -------------hhccCCeEEEEEcCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHH
Confidence 1112356889999999976 5555443 5899999999642 13455678
Q ss_pred HHHHHHHHHHHHHHH----HhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCC
Q psy17528 194 YNINVKGTQTILALA----KRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGK 269 (366)
Q Consensus 194 ~~~nv~~~~~ll~~a----~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (366)
+++|+.+...+.+.+ ++. +..+||++||...+.... .
T Consensus 108 ~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~iss~~~~~~~~--------------------------------------~ 148 (245)
T PRK12824 108 INTNLNSVFNVTQPLFAAMCEQ-GYGRIINISSVNGLKGQF--------------------------------------G 148 (245)
T ss_pred HHHHhHHHHHHHHHHHHHHHHh-CCeEEEEECChhhccCCC--------------------------------------C
Confidence 889999988875544 433 567999999976542210 0
Q ss_pred CchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCc
Q psy17528 270 PNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDV 344 (366)
Q Consensus 270 ~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~ 344 (366)
...|..+|...+.+++.+. .++++++++|+.+.++...... .......... .....+
T Consensus 149 ~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~---------~~~~~~~~~~---------~~~~~~ 210 (245)
T PRK12824 149 QTNYSAAKAGMIGFTKALASEGARYGITVNCIAPGYIATPMVEQMG---------PEVLQSIVNQ---------IPMKRL 210 (245)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEEcccCCcchhhcC---------HHHHHHHHhc---------CCCCCC
Confidence 1579999998888776654 5899999999999876432211 0111111111 113346
Q ss_pred ccHHHHHHHHHHHHHhh
Q psy17528 345 VPGDRVINAMAALAWYF 361 (366)
Q Consensus 345 v~vdDva~ai~~~~~~~ 361 (366)
...+++++++..++...
T Consensus 211 ~~~~~va~~~~~l~~~~ 227 (245)
T PRK12824 211 GTPEEIAAAVAFLVSEA 227 (245)
T ss_pred CCHHHHHHHHHHHcCcc
Confidence 67899999998887543
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-14 Score=137.03 Aligned_cols=158 Identities=15% Similarity=0.231 Sum_probs=116.1
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+++|+||||+|+||.+++++|.+.| .+|++++|+.... +.+.
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G---~~Vi~~~r~~~~~---~~l~-------------------------------- 45 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDG---WRVFATCRKEEDV---AALE-------------------------------- 45 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEECCHHHH---HHHH--------------------------------
Confidence 5789999999999999999999998 7899999974321 1110
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--------CcCEEEEcCcccCh-------hhhHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--------QTTIIFHIAATVRF-------DEHIRT 192 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--------~~d~Vih~a~~~~~-------~~~~~~ 192 (366)
...+.++.+|+++.+ .+..+++ .+|+||||||.... ....+.
T Consensus 46 -----------------~~~~~~~~~Dl~d~~------~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~ 102 (277)
T PRK05993 46 -----------------AEGLEAFQLDYAEPE------SIAALVAQVLELSGGRLDALFNNGAYGQPGAVEDLPTEALRA 102 (277)
T ss_pred -----------------HCCceEEEccCCCHH------HHHHHHHHHHHHcCCCccEEEECCCcCCCCCcccCCHHHHHH
Confidence 024678899999876 4544443 47999999986431 234567
Q ss_pred HHHHHHHHH----HHHHHHHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 193 AYNINVKGT----QTILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 193 ~~~~nv~~~----~~ll~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
.+++|+.+. +.++..+.+. +..+||++||.+++....
T Consensus 103 ~~~~N~~g~~~~~~~~l~~~~~~-~~g~iv~isS~~~~~~~~-------------------------------------- 143 (277)
T PRK05993 103 QFEANFFGWHDLTRRVIPVMRKQ-GQGRIVQCSSILGLVPMK-------------------------------------- 143 (277)
T ss_pred HHhHHhHHHHHHHHHHHHHHhhc-CCCEEEEECChhhcCCCC--------------------------------------
Confidence 889999984 4455555554 567999999976542210
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTL 305 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~ 305 (366)
....|+.+|...|.+.+... .|+++++++||.|-.+.
T Consensus 144 ~~~~Y~asK~a~~~~~~~l~~el~~~gi~v~~v~Pg~v~T~~ 185 (277)
T PRK05993 144 YRGAYNASKFAIEGLSLTLRMELQGSGIHVSLIEPGPIETRF 185 (277)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCCccCch
Confidence 11689999999999987654 68999999999987653
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.6e-14 Score=131.35 Aligned_cols=163 Identities=17% Similarity=0.109 Sum_probs=119.4
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
|+++|||||+|+||++++++|++.| .+|++++|+... .+.+.+.
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G---~~V~~~~r~~~~---~~~~~~~------------------------------ 44 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEG---WRVGAYDINEAG---LAALAAE------------------------------ 44 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCC---CeEEEEeCCHHH---HHHHHHH------------------------------
Confidence 4789999999999999999999998 789999987431 1111110
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--------CcCEEEEcCcccCh-------hhhHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--------QTTIIFHIAATVRF-------DEHIRT 192 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--------~~d~Vih~a~~~~~-------~~~~~~ 192 (366)
.. ..++.++.+|+.+.+ ++.+++. .+|+||||||.... ...++.
T Consensus 45 -------------~~--~~~~~~~~~D~~~~~------~v~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~ 103 (260)
T PRK08267 45 -------------LG--AGNAWTGALDVTDRA------AWDAALADFAAATGGRLDVLFNNAGILRGGPFEDIPLEAHDR 103 (260)
T ss_pred -------------hc--CCceEEEEecCCCHH------HHHHHHHHHHHHcCCCCCEEEECCCCCCCCccccCCHHHHHH
Confidence 10 246889999999876 5555443 46999999997431 235677
Q ss_pred HHHHHHHHHHHHHHHHHh---cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCC
Q psy17528 193 AYNINVKGTQTILALAKR---MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGK 269 (366)
Q Consensus 193 ~~~~nv~~~~~ll~~a~~---~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (366)
.+++|+.++..+++++.+ ..+..++|++||..+..... .
T Consensus 104 ~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~--------------------------------------~ 145 (260)
T PRK08267 104 VIDINVKGVLNGAHAALPYLKATPGARVINTSSASAIYGQP--------------------------------------G 145 (260)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCchhhCcCCC--------------------------------------C
Confidence 899999999999887643 12456899999975432110 0
Q ss_pred CchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCC
Q psy17528 270 PNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTL 305 (366)
Q Consensus 270 ~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~ 305 (366)
...|+.+|...+.+.+... +++++++++|+.+..+.
T Consensus 146 ~~~Y~~sKaa~~~~~~~l~~~~~~~~i~v~~i~pg~~~t~~ 186 (260)
T PRK08267 146 LAVYSATKFAVRGLTEALDLEWRRHGIRVADVMPLFVDTAM 186 (260)
T ss_pred chhhHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCcCCcc
Confidence 1679999999988887764 68999999999987653
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.5e-14 Score=132.00 Aligned_cols=207 Identities=15% Similarity=0.159 Sum_probs=140.0
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||.+++++|++.| ++|++++|+... .+.+.+.+. .
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G---~~Vi~~~r~~~~---~~~~~~~l~--------~----------------- 56 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAG---ADVLIAARTESQ---LDEVAEQIR--------A----------------- 56 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHHHH--------h-----------------
Confidence 568999999999999999999999998 799999997431 111111110 0
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
...++.++.+|+++.+ .+.++++ ++|+|||+||... ....+.
T Consensus 57 ------------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~ 112 (263)
T PRK07814 57 ------------------AGRRAHVVAADLAHPE------ATAGLAGQAVEAFGRLDIVVNNVGGTMPNPLLSTSTKDLA 112 (263)
T ss_pred ------------------cCCcEEEEEccCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHH
Confidence 1246788899999876 5555443 6899999998532 123456
Q ss_pred HHHHHHHHHHHHHHHHHHhc----CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 192 TAYNINVKGTQTILALAKRM----KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~----~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
..+++|+.++..+.+.+.+. .+..++|++||.......
T Consensus 113 ~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~~~~~~-------------------------------------- 154 (263)
T PRK07814 113 DAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTMGRLAG-------------------------------------- 154 (263)
T ss_pred HHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccccccCCC--------------------------------------
Confidence 78899999999999987641 245689999997543211
Q ss_pred CCCchHHHHHHHHHHHHHHhc----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
.....|+.+|...+.+++... .++.++.++||.+..+..... . .. ..+. ....+. .....
T Consensus 155 ~~~~~Y~~sK~a~~~~~~~~~~e~~~~i~v~~i~Pg~v~t~~~~~~---~-~~---~~~~-~~~~~~--------~~~~~ 218 (263)
T PRK07814 155 RGFAAYGTAKAALAHYTRLAALDLCPRIRVNAIAPGSILTSALEVV---A-AN---DELR-APMEKA--------TPLRR 218 (263)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHCCCceEEEEEeCCCcCchhhhc---c-CC---HHHH-HHHHhc--------CCCCC
Confidence 011679999999999988766 468899999999876532110 0 00 0111 111111 11223
Q ss_pred cccHHHHHHHHHHHHHhh
Q psy17528 344 VVPGDRVINAMAALAWYF 361 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~~ 361 (366)
+...+|+|++++.++...
T Consensus 219 ~~~~~~va~~~~~l~~~~ 236 (263)
T PRK07814 219 LGDPEDIAAAAVYLASPA 236 (263)
T ss_pred CcCHHHHHHHHHHHcCcc
Confidence 568899999999988543
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.3e-14 Score=151.92 Aligned_cols=249 Identities=14% Similarity=0.070 Sum_probs=155.4
Q ss_pred CCCCCchhhhhhccccccccccccCC-CCcccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHH
Q psy17528 13 SHHPDLMDWNLLDKEDEGKELLSDET-LSPIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSIT 91 (366)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~ 91 (366)
..+..+.--..++. ||+++...+. ..+....+++++||||||+|+||++++++|++.| .+|++++|+... .
T Consensus 380 ~~~~~~~~~~~f~~--eyw~~e~~kl~~~~~~~~l~gkvvLVTGasggIG~aiA~~La~~G---a~Vvi~~r~~~~---~ 451 (676)
T TIGR02632 380 SEYVSLPEQEAFDI--EYWPLEEAKLRRMPKEKTLARRVAFVTGGAGGIGRETARRLAAEG---AHVVLADLNLEA---A 451 (676)
T ss_pred cceecCchhhccch--hhhhhhHHhhccCCCCcCCCCCEEEEeCCCcHHHHHHHHHHHhCC---CEEEEEeCCHHH---H
Confidence 44444455556777 7886665544 2333455778999999999999999999999998 799999987432 1
Q ss_pred HHHHHHhhhhhhhhhhhcCCCCCCccccccccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH
Q psy17528 92 QRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI 171 (366)
Q Consensus 92 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~ 171 (366)
+.+.+. +... . ....+..+.+|+++.+ ++..++
T Consensus 452 ~~~~~~--------l~~~-------------------------------~--~~~~~~~v~~Dvtd~~------~v~~a~ 484 (676)
T TIGR02632 452 EAVAAE--------INGQ-------------------------------F--GAGRAVALKMDVTDEQ------AVKAAF 484 (676)
T ss_pred HHHHHH--------HHhh-------------------------------c--CCCcEEEEECCCCCHH------HHHHHH
Confidence 111111 1100 0 1135678899999976 666655
Q ss_pred h-------CcCEEEEcCcccCh-------hhhHHHHHHHHHHHHHHHHHHHH----hcCCCcEEEEeeCcceecCccccc
Q psy17528 172 S-------QTTIIFHIAATVRF-------DEHIRTAYNINVKGTQTILALAK----RMKGLKSFVHVSTAYCNCDRKFIA 233 (366)
Q Consensus 172 ~-------~~d~Vih~a~~~~~-------~~~~~~~~~~nv~~~~~ll~~a~----~~~~~~~~v~iSS~~~~~~~~~~~ 233 (366)
. ++|+||||||.... ...+...+++|+.+...+.+.+. +.+...++|++||..+.....
T Consensus 485 ~~i~~~~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a~~~~~--- 561 (676)
T TIGR02632 485 ADVALAYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNAVYAGK--- 561 (676)
T ss_pred HHHHHhcCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhhcCCCC---
Confidence 4 68999999997431 23456778889888776654433 322235899999975432110
Q ss_pred cccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccc-cCCCC
Q psy17528 234 EKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVF-PTLQE 307 (366)
Q Consensus 234 e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~-G~~~~ 307 (366)
....|+.+|...+.+++.+. .+++++.++|+.|+ |+...
T Consensus 562 -----------------------------------~~~aY~aSKaA~~~l~r~lA~el~~~gIrVn~V~Pg~V~~~s~~~ 606 (676)
T TIGR02632 562 -----------------------------------NASAYSAAKAAEAHLARCLAAEGGTYGIRVNTVNPDAVLQGSGIW 606 (676)
T ss_pred -----------------------------------CCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEECCceecCcccc
Confidence 11689999999999998765 58999999999987 33211
Q ss_pred CCCccccccchHHHHHHHHhcC-cceeecCCCCcccCcccHHHHHHHHHHHHHh
Q psy17528 308 PMPLWIKGFNGVMALALGAGTG-LIRVVQTDPNISMDVVPGDRVINAMAALAWY 360 (366)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~g-~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~ 360 (366)
. ..|.. .......... .....+........+++.+|+|++++.++..
T Consensus 607 ~-~~~~~-----~~~~~~~~~~~~~~~~~~~r~~l~r~v~peDVA~av~~L~s~ 654 (676)
T TIGR02632 607 D-GEWRE-----ERAAAYGIPADELEEHYAKRTLLKRHIFPADIAEAVFFLASS 654 (676)
T ss_pred c-ccchh-----hhhhcccCChHHHHHHHHhcCCcCCCcCHHHHHHHHHHHhCC
Confidence 0 11110 0000000000 0000111223345678999999999988754
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.3e-14 Score=133.00 Aligned_cols=212 Identities=10% Similarity=0.064 Sum_probs=137.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
++++++|||||+|+||.+++++|++.| ++|+++.|+ .. .+.+.+.+. .
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G---~~vi~~~r~-~~---~~~~~~~~~--------~----------------- 51 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEG---AYVLAVDIA-EA---VSETVDKIK--------S----------------- 51 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCc-HH---HHHHHHHHH--------h-----------------
Confidence 568999999999999999999999998 899999987 21 111111110 0
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh--------hhhH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF--------DEHI 190 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~--------~~~~ 190 (366)
...++.++.+|+.+.+ .+..+++ .+|++|||||.... ...+
T Consensus 52 ------------------~~~~~~~~~~Dl~~~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~ 107 (272)
T PRK08589 52 ------------------NGGKAKAYHVDISDEQ------QVKDFASEIKEQFGRVDVLFNNAGVDNAAGRIHEYPVDVF 107 (272)
T ss_pred ------------------cCCeEEEEEeecCCHH------HHHHHHHHHHHHcCCcCEEEECCCCCCCCCCcccCCHHHH
Confidence 1246788999999876 5554443 57999999997421 1245
Q ss_pred HHHHHHHHHHHHHHHHHHHhc--CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 191 RTAYNINVKGTQTILALAKRM--KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~--~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
+..+++|+.+...+++.+.+. ....++|++||...+... .
T Consensus 108 ~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------------------------------------~ 149 (272)
T PRK08589 108 DKIMAVDMRGTFLMTKMLLPLMMEQGGSIINTSSFSGQAAD--------------------------------------L 149 (272)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEeCchhhcCCC--------------------------------------C
Confidence 677888999887776654431 112589999997654211 0
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
....|+.+|...+.+++.+. +|+.++.+.||.|..+......... . ..+. .......... .....
T Consensus 150 ~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~PG~v~T~~~~~~~~~~---~--~~~~-~~~~~~~~~~----~~~~~ 219 (272)
T PRK08589 150 YRSGYNAAKGAVINFTKSIAIEYGRDGIRANAIAPGTIETPLVDKLTGTS---E--DEAG-KTFRENQKWM----TPLGR 219 (272)
T ss_pred CCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCchhhhhcccc---h--hhHH-HHHhhhhhcc----CCCCC
Confidence 12679999999999998765 6899999999999876432110000 0 0000 0000000000 11223
Q ss_pred cccHHHHHHHHHHHHHhh
Q psy17528 344 VVPGDRVINAMAALAWYF 361 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~~ 361 (366)
+...+|++++++.++...
T Consensus 220 ~~~~~~va~~~~~l~s~~ 237 (272)
T PRK08589 220 LGKPEEVAKLVVFLASDD 237 (272)
T ss_pred CcCHHHHHHHHHHHcCch
Confidence 568899999999888643
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.7e-13 Score=131.95 Aligned_cols=168 Identities=14% Similarity=0.128 Sum_probs=120.4
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++|+||||+|+||.+++++|++.| ++|++++|+.+. .+.+.+.+. .
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~G---~~Vi~~~R~~~~---l~~~~~~l~--------~----------------- 86 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARRG---ATVVAVARREDL---LDAVADRIT--------R----------------- 86 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEECCHHH---HHHHHHHHH--------h-----------------
Confidence 457899999999999999999999998 899999997421 111211110 0
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh---------hhh
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF---------DEH 189 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~---------~~~ 189 (366)
....+.++.+|+.+.+ .+.++++ .+|+||||||.... ...
T Consensus 87 ------------------~~~~~~~~~~Dl~d~~------~v~~~~~~~~~~~g~id~li~~AG~~~~~~~~~~~~~~~~ 142 (293)
T PRK05866 87 ------------------AGGDAMAVPCDLSDLD------AVDALVADVEKRIGGVDILINNAGRSIRRPLAESLDRWHD 142 (293)
T ss_pred ------------------cCCcEEEEEccCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCcchhhccccHHH
Confidence 1235778899999876 5665554 68999999996421 134
Q ss_pred HHHHHHHHHHHHHHHHHHHHh---cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 190 IRTAYNINVKGTQTILALAKR---MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 190 ~~~~~~~nv~~~~~ll~~a~~---~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
.+..+++|+.+...+++.+.. ..+..++|++||..++.... |
T Consensus 143 ~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------p-------------------------- 187 (293)
T PRK05866 143 VERTMVLNYYAPLRLIRGLAPGMLERGDGHIINVATWGVLSEAS---------P-------------------------- 187 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCCCC---------C--------------------------
Confidence 456788999998887776532 12556899999975442110 0
Q ss_pred CCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCC
Q psy17528 267 GGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTL 305 (366)
Q Consensus 267 ~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~ 305 (366)
....|+.+|+..+.+++... +++.+++++||.|-++.
T Consensus 188 --~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~pg~v~T~~ 229 (293)
T PRK05866 188 --LFSVYNASKAALSAVSRVIETEWGDRGVHSTTLYYPLVATPM 229 (293)
T ss_pred --CcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEEcCcccCcc
Confidence 11679999999998887764 68999999999887653
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-13 Score=128.47 Aligned_cols=168 Identities=15% Similarity=0.130 Sum_probs=118.5
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+++++||||+|+||.+++++|++.| .+|++++|+.... +.+.+. +...
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g---~~v~~~~r~~~~~---~~~~~~--------~~~~------------------ 49 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKG---RDLALCARRTDRL---EELKAE--------LLAR------------------ 49 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcC---CEEEEEeCCHHHH---HHHHHH--------HHhh------------------
Confidence 5789999999999999999999998 7899999974321 111111 1100
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIRTA 193 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~~~ 193 (366)
. ...++.++.+|+++.+ .+..+++ ++|+|||+||.... .......
T Consensus 50 -------------~--~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~ 108 (248)
T PRK08251 50 -------------Y--PGIKVAVAALDVNDHD------QVFEVFAEFRDELGGLDRVIVNAGIGKGARLGTGKFWANKAT 108 (248)
T ss_pred -------------C--CCceEEEEEcCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcCcCCHHHHHHH
Confidence 1 1246788999999976 5554443 68999999996432 2334567
Q ss_pred HHHHHHHHHHHHHHHHh---cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCC
Q psy17528 194 YNINVKGTQTILALAKR---MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKP 270 (366)
Q Consensus 194 ~~~nv~~~~~ll~~a~~---~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (366)
+++|+.+...+++.+.. ..+..+||++||....... +.+ .
T Consensus 109 ~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~--------~~~-----------------------------~ 151 (248)
T PRK08251 109 AETNFVAALAQCEAAMEIFREQGSGHLVLISSVSAVRGL--------PGV-----------------------------K 151 (248)
T ss_pred HHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccCC--------CCC-----------------------------c
Confidence 88999998888776542 1256789999997543211 000 1
Q ss_pred chHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCC
Q psy17528 271 NSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTL 305 (366)
Q Consensus 271 ~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~ 305 (366)
..|+.+|...+.++.... .++.+++++|+.+.++.
T Consensus 152 ~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~ 191 (248)
T PRK08251 152 AAYAASKAGVASLGEGLRAELAKTPIKVSTIEPGYIRSEM 191 (248)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcCcchh
Confidence 579999999888876555 57999999999998753
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.5e-14 Score=131.98 Aligned_cols=206 Identities=14% Similarity=0.182 Sum_probs=139.1
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||.+++++|++.| .+|++++|+... .+++.+.
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~---~~~~~~~---------------------------- 49 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAG---ARVAIVDIDADN---GAAVAAS---------------------------- 49 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHH----------------------------
Confidence 568999999999999999999999998 799999997431 1111110
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC------hhhhHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR------FDEHIRT 192 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~------~~~~~~~ 192 (366)
...++.++.+|+.+.+ .+..++. .+|++|||||... ....+..
T Consensus 50 ------------------~~~~~~~~~~Dl~~~~------~~~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~ 105 (261)
T PRK08265 50 ------------------LGERARFIATDITDDA------AIERAVATVVARFGRVDILVNLACTYLDDGLASSRADWLA 105 (261)
T ss_pred ------------------hCCeeEEEEecCCCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCcCcCCHHHHHH
Confidence 1246788999999976 5655553 5799999999632 2345677
Q ss_pred HHHHHHHHHHHHHHHHHhc--CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCC
Q psy17528 193 AYNINVKGTQTILALAKRM--KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKP 270 (366)
Q Consensus 193 ~~~~nv~~~~~ll~~a~~~--~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (366)
.+++|+.++..+++.+.+. .+..++|++||........ ..
T Consensus 106 ~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~--------------------------------------~~ 147 (261)
T PRK08265 106 ALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISAKFAQT--------------------------------------GR 147 (261)
T ss_pred HHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhhccCCC--------------------------------------CC
Confidence 8899999998888866531 2346899999975432110 01
Q ss_pred chHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcc
Q psy17528 271 NSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVV 345 (366)
Q Consensus 271 ~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v 345 (366)
..|+.+|...+.+++... +++++++++||.+..+....... .. .......... ......+.
T Consensus 148 ~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~~~t~~~~~~~~---~~---~~~~~~~~~~--------~~p~~r~~ 213 (261)
T PRK08265 148 WLYPASKAAIRQLTRSMAMDLAPDGIRVNSVSPGWTWSRVMDELSG---GD---RAKADRVAAP--------FHLLGRVG 213 (261)
T ss_pred chhHHHHHHHHHHHHHHHHHhcccCEEEEEEccCCccChhhhhhcc---cc---hhHHHHhhcc--------cCCCCCcc
Confidence 579999999998887765 68999999999887653211100 00 0000011000 01122356
Q ss_pred cHHHHHHHHHHHHHhh
Q psy17528 346 PGDRVINAMAALAWYF 361 (366)
Q Consensus 346 ~vdDva~ai~~~~~~~ 361 (366)
..+|+|++++.++...
T Consensus 214 ~p~dva~~~~~l~s~~ 229 (261)
T PRK08265 214 DPEEVAQVVAFLCSDA 229 (261)
T ss_pred CHHHHHHHHHHHcCcc
Confidence 7899999999988654
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-13 Score=129.97 Aligned_cols=212 Identities=17% Similarity=0.138 Sum_probs=139.1
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||++++++|++.| ++|++++|+... .+...+ +..
T Consensus 4 ~~~~~~lItG~s~giG~~la~~l~~~G---~~Vv~~~r~~~~---~~~~~~---------~~~----------------- 51 (263)
T PRK08226 4 LTGKTALITGALQGIGEGIARVFARHG---ANLILLDISPEI---EKLADE---------LCG----------------- 51 (263)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEecCCHHH---HHHHHH---------HHH-----------------
Confidence 567999999999999999999999998 789999887421 111111 000
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~ 191 (366)
...++.++.+|+.+.+ ++..++. .+|+|||+||.... ....+
T Consensus 52 ------------------~~~~~~~~~~Dl~~~~------~v~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~ 107 (263)
T PRK08226 52 ------------------RGHRCTAVVADVRDPA------SVAAAIKRAKEKEGRIDILVNNAGVCRLGSFLDMSDEDRD 107 (263)
T ss_pred ------------------hCCceEEEECCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHH
Confidence 1245778899999876 5555543 57999999996421 23456
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
..+++|+.++..+++.+.+. .+..++|++||....... .+
T Consensus 108 ~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~---------~~---------------------------- 150 (263)
T PRK08226 108 FHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMVA---------DP---------------------------- 150 (263)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhcccC---------CC----------------------------
Confidence 67899999999888876531 244689999996532100 00
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
....|+.+|...|.+++.+. .+++++.++||.+.++.......... .............+. ....
T Consensus 151 ~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~i~pg~v~t~~~~~~~~~~~-~~~~~~~~~~~~~~~---------p~~~ 220 (263)
T PRK08226 151 GETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSN-PEDPESVLTEMAKAI---------PLRR 220 (263)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccCHHHHhhhhhcc-CCCcHHHHHHHhccC---------CCCC
Confidence 01679999999998887765 58999999999998874321110000 000111222222211 1223
Q ss_pred cccHHHHHHHHHHHHHh
Q psy17528 344 VVPGDRVINAMAALAWY 360 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~ 360 (366)
+...+|++++++.++..
T Consensus 221 ~~~~~~va~~~~~l~~~ 237 (263)
T PRK08226 221 LADPLEVGELAAFLASD 237 (263)
T ss_pred CCCHHHHHHHHHHHcCc
Confidence 56889999999887753
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.5e-14 Score=135.74 Aligned_cols=199 Identities=17% Similarity=0.089 Sum_probs=120.7
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
++++|+||||+|+||.+++++|++.| .+|++++|+.... +.+.+.
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G---~~V~~~~r~~~~~---~~~~~~----------------------------- 49 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRG---WHVIMACRNLKKA---EAAAQE----------------------------- 49 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCC---CEEEEEECCHHHH---HHHHHH-----------------------------
Confidence 57899999999999999999999998 7899999874311 111110
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh--------hhhHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF--------DEHIR 191 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~--------~~~~~ 191 (366)
......++.++.+|+.+.+ .+..+++ .+|+||||||.... ...++
T Consensus 50 --------------l~~~~~~~~~~~~Dl~~~~------~v~~~~~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~ 109 (322)
T PRK07453 50 --------------LGIPPDSYTIIHIDLGDLD------SVRRFVDDFRALGKPLDALVCNAAVYMPLLKEPLRSPQGYE 109 (322)
T ss_pred --------------hhccCCceEEEEecCCCHH------HHHHHHHHHHHhCCCccEEEECCcccCCCCCCCCCCHHHHH
Confidence 0001246788999999876 5655553 48999999996421 23457
Q ss_pred HHHHHHHHHHHHHHHHHHh----cC-CCcEEEEeeCcceecCc--cccccccCCCCCChHHHHHHhhhcchHHHHhhhhc
Q psy17528 192 TAYNINVKGTQTILALAKR----MK-GLKSFVHVSTAYCNCDR--KFIAEKFYPPVFTAEELSALVAHASDEEIALLNEH 264 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~----~~-~~~~~v~iSS~~~~~~~--~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 264 (366)
..+++|+.++..+++++.+ .+ +..++|++||...+... .... .+.+.+...+.......+ .+......
T Consensus 110 ~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~- 184 (322)
T PRK07453 110 LSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVTANPKELGGKIP---IPAPADLGDLSGFEAGFK-APISMADG- 184 (322)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccccCccccCCccC---CCCccchhhhhcchhccc-ccccccCc-
Confidence 7889999999888877654 21 13599999997543210 0000 000000000000000000 00000000
Q ss_pred ccCCCCchHHHHHHHHHHHHHHhc------CCCCEEEEecCccccCC
Q psy17528 265 IIGGKPNSYTLTKATAEDLVRQVG------HELPICVLRPSIVFPTL 305 (366)
Q Consensus 265 ~~~~~~~~Y~~sK~~~E~~l~~~~------~gl~~~ilRp~~v~G~~ 305 (366)
........|+.||+..+.+.+.+. +++.++++|||+|+++.
T Consensus 185 ~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~ 231 (322)
T PRK07453 185 KKFKPGKAYKDSKLCNMLTMRELHRRYHESTGITFSSLYPGCVADTP 231 (322)
T ss_pred cCCCccchhhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCCc
Confidence 001122689999998776665544 47999999999998754
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-13 Score=128.83 Aligned_cols=213 Identities=15% Similarity=0.137 Sum_probs=136.5
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCC-cCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGS-TSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
+++++++||||+|+||.+++++|++.| ++|+++.+.... ....+++.+.+. .
T Consensus 6 l~~k~vlItGa~~gIG~~~a~~l~~~G---~~vv~i~~~~~~~~~~~~~~~~~l~--------~---------------- 58 (257)
T PRK12744 6 LKGKVVLIAGGAKNLGGLIARDLAAQG---AKAVAIHYNSAASKADAEETVAAVK--------A---------------- 58 (257)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCC---CcEEEEecCCccchHHHHHHHHHHH--------H----------------
Confidence 457899999999999999999999998 676666664322 111122211111 0
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHI 190 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~ 190 (366)
...++.++.+|+.+.+ .+..++. .+|++||+||... ....+
T Consensus 59 -------------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~ 113 (257)
T PRK12744 59 -------------------AGAKAVAFQADLTTAA------AVEKLFDDAKAAFGRPDIAINTVGKVLKKPIVEISEAEY 113 (257)
T ss_pred -------------------hCCcEEEEecCcCCHH------HHHHHHHHHHHhhCCCCEEEECCcccCCCCcccCCHHHH
Confidence 1246788999999876 5665543 5799999999732 12346
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCC
Q psy17528 191 RTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGK 269 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (366)
+..+++|+.++..+++.+.+. ....++++++|+...... | .
T Consensus 114 ~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~~~----------~----------------------------~ 155 (257)
T PRK12744 114 DEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGAFT----------P----------------------------F 155 (257)
T ss_pred HHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhcccC----------C----------------------------C
Confidence 778899999999988877642 222467766433211110 0 0
Q ss_pred CchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCc
Q psy17528 270 PNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDV 344 (366)
Q Consensus 270 ~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~ 344 (366)
...|+.+|...|.+.+.+. +++++++++||.+.++...+.... . ..........+ .+-....+
T Consensus 156 ~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~t~~~~~~~~~----~-~~~~~~~~~~~-------~~~~~~~~ 223 (257)
T PRK12744 156 YSAYAGSKAPVEHFTRAASKEFGARGISVTAVGPGPMDTPFFYPQEGA----E-AVAYHKTAAAL-------SPFSKTGL 223 (257)
T ss_pred cccchhhHHHHHHHHHHHHHHhCcCceEEEEEecCccccchhcccccc----c-hhhcccccccc-------cccccCCC
Confidence 1679999999999998876 579999999999987643221100 0 00000000000 11112258
Q ss_pred ccHHHHHHHHHHHHHh
Q psy17528 345 VPGDRVINAMAALAWY 360 (366)
Q Consensus 345 v~vdDva~ai~~~~~~ 360 (366)
.+.+|+|+++..+++.
T Consensus 224 ~~~~dva~~~~~l~~~ 239 (257)
T PRK12744 224 TDIEDIVPFIRFLVTD 239 (257)
T ss_pred CCHHHHHHHHHHhhcc
Confidence 8999999999998874
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.9e-14 Score=128.63 Aligned_cols=208 Identities=13% Similarity=0.118 Sum_probs=137.7
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++|||++|+||+++++.|++.| .+|++++|+.... +...+. ++
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G---~~vi~~~r~~~~~---~~~~~~--------~~------------------ 50 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKG---AKLALIDLNQEKL---EEAVAE--------CG------------------ 50 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCHHHH---HHHHHH--------HH------------------
Confidence 468899999999999999999999998 7889998874321 111110 00
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh------------
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF------------ 186 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~------------ 186 (366)
....++.++.+|+.+.+ .+.++++ .+|+|||++|....
T Consensus 51 -----------------~~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~ 107 (253)
T PRK08217 51 -----------------ALGTEVRGYAANVTDEE------DVEATFAQIAEDFGQLNGLINNAGILRDGLLVKAKDGKVT 107 (253)
T ss_pred -----------------hcCCceEEEEcCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCccCcCccccccccccc
Confidence 11346788999999875 4444333 47999999995321
Q ss_pred ----hhhHHHHHHHHHHHHHHHHHHHH----hcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHH
Q psy17528 187 ----DEHIRTAYNINVKGTQTILALAK----RMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEI 258 (366)
Q Consensus 187 ----~~~~~~~~~~nv~~~~~ll~~a~----~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~ 258 (366)
...+...+++|+.++..+.+.+. +......++++||...++..
T Consensus 108 ~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~iv~~ss~~~~~~~----------------------------- 158 (253)
T PRK08217 108 SKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISSIARAGNM----------------------------- 158 (253)
T ss_pred ccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEccccccCCC-----------------------------
Confidence 13445677889998877665433 22123468889887544221
Q ss_pred HhhhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCccee
Q psy17528 259 ALLNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRV 333 (366)
Q Consensus 259 ~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 333 (366)
....|+.+|...+.+++.+. ++++++.++|+.+.++..... . .........+.
T Consensus 159 ----------~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~pg~v~t~~~~~~-------~--~~~~~~~~~~~--- 216 (253)
T PRK08217 159 ----------GQTNYSASKAGVAAMTVTWAKELARYGIRVAAIAPGVIETEMTAAM-------K--PEALERLEKMI--- 216 (253)
T ss_pred ----------CCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCcccccc-------C--HHHHHHHHhcC---
Confidence 01679999999999887665 689999999999988754211 0 11111111111
Q ss_pred ecCCCCcccCcccHHHHHHHHHHHHHhhhhcC
Q psy17528 334 VQTDPNISMDVVPGDRVINAMAALAWYFLFSC 365 (366)
Q Consensus 334 l~~~~~~~~~~v~vdDva~ai~~~~~~~~~~~ 365 (366)
....+.+++|+|+++..++.....+|
T Consensus 217 ------~~~~~~~~~~~a~~~~~l~~~~~~~g 242 (253)
T PRK08217 217 ------PVGRLGEPEEIAHTVRFIIENDYVTG 242 (253)
T ss_pred ------CcCCCcCHHHHHHHHHHHHcCCCcCC
Confidence 12346789999999999886543343
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.4e-14 Score=130.54 Aligned_cols=202 Identities=14% Similarity=0.148 Sum_probs=133.4
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||++++++|++.| ..|++..|+... .+.+.+.
T Consensus 4 ~~~~~vlItGa~g~iG~~la~~l~~~g---~~v~~~~~~~~~---~~~~~~~---------------------------- 49 (245)
T PRK12936 4 LSGRKALVTGASGGIGEEIARLLHAQG---AIVGLHGTRVEK---LEALAAE---------------------------- 49 (245)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEcCCHHH---HHHHHHH----------------------------
Confidence 457899999999999999999999998 677777775321 1111110
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH-------hCcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI-------SQTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~-------~~~d~Vih~a~~~~-------~~~~~~ 191 (366)
...++.++.+|+.+.+ .+..++ .++|+|||+||... ....++
T Consensus 50 ------------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~ 105 (245)
T PRK12936 50 ------------------LGERVKIFPANLSDRD------EVKALGQKAEADLEGVDILVNNAGITKDGLFVRMSDEDWD 105 (245)
T ss_pred ------------------hCCceEEEEccCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHH
Confidence 1235778899999876 555543 35899999999642 124567
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
..+++|+.++..+++.+.+. .+.++||++||........
T Consensus 106 ~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~-------------------------------------- 147 (245)
T PRK12936 106 SVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVVGVTGNP-------------------------------------- 147 (245)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHHhCcCCC--------------------------------------
Confidence 78899999988887765421 2556899999975432110
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
....|+.+|...+.+++... .++++++++|+.+..+...... . .......+. .....
T Consensus 148 ~~~~Y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~~~------~----~~~~~~~~~--------~~~~~ 209 (245)
T PRK12936 148 GQANYCASKAGMIGFSKSLAQEIATRNVTVNCVAPGFIESAMTGKLN------D----KQKEAIMGA--------IPMKR 209 (245)
T ss_pred CCcchHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcCcCchhcccC------h----HHHHHHhcC--------CCCCC
Confidence 01579999997777765543 6899999999987654321110 0 000111110 11233
Q ss_pred cccHHHHHHHHHHHHHhh
Q psy17528 344 VVPGDRVINAMAALAWYF 361 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~~ 361 (366)
+...+|+++++..++...
T Consensus 210 ~~~~~~ia~~~~~l~~~~ 227 (245)
T PRK12936 210 MGTGAEVASAVAYLASSE 227 (245)
T ss_pred CcCHHHHHHHHHHHcCcc
Confidence 667999999998877543
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.9e-14 Score=130.09 Aligned_cols=205 Identities=15% Similarity=0.161 Sum_probs=138.4
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||.+++++|++.| .+|+++.|+... .+.+.+. +..
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~---~~~~~~~--------l~~----------------- 55 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAG---AQVAIAARHLDA---LEKLADE--------IGT----------------- 55 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEcCCHHH---HHHHHHH--------HHh-----------------
Confidence 568999999999999999999999998 789999886431 1222211 111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~ 191 (366)
...++.++.+|+.+.+ .+.++++ .+|++|||||.... ...++
T Consensus 56 ------------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~ 111 (253)
T PRK05867 56 ------------------SGGKVVPVCCDVSQHQ------QVTSMLDQVTAELGGIDIAVCNAGIITVTPMLDMPLEEFQ 111 (253)
T ss_pred ------------------cCCeEEEEEccCCCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHH
Confidence 1246778899999876 5555543 68999999997431 23456
Q ss_pred HHHHHHHHHHHHHHHHHHhc----CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 192 TAYNINVKGTQTILALAKRM----KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~----~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
..+++|+.++..+.+++.+. +...++|++||........ +
T Consensus 112 ~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~-------~----------------------------- 155 (253)
T PRK05867 112 RLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHIINV-------P----------------------------- 155 (253)
T ss_pred HHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHhcCCCC-------C-----------------------------
Confidence 77889999988888876432 1224789998865421100 0
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
.....|+.+|...+.+++.+. +|++++.++||.|-.+..... . .......... ...
T Consensus 156 ~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~i~PG~v~t~~~~~~-------~---~~~~~~~~~~---------~~~ 216 (253)
T PRK05867 156 QQVSHYCASKAAVIHLTKAMAVELAPHKIRVNSVSPGYILTELVEPY-------T---EYQPLWEPKI---------PLG 216 (253)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHhHhCeEEEEeecCCCCCcccccc-------h---HHHHHHHhcC---------CCC
Confidence 001579999999999998775 689999999999976643211 1 1111111111 122
Q ss_pred CcccHHHHHHHHHHHHHh
Q psy17528 343 DVVPGDRVINAMAALAWY 360 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~ 360 (366)
.+...+|+|++++.++..
T Consensus 217 r~~~p~~va~~~~~L~s~ 234 (253)
T PRK05867 217 RLGRPEELAGLYLYLASE 234 (253)
T ss_pred CCcCHHHHHHHHHHHcCc
Confidence 367889999999998864
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-13 Score=128.68 Aligned_cols=204 Identities=11% Similarity=0.090 Sum_probs=137.0
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+++++||||+|+||.+++++|++.| ++|+++.|+... ..+++.+.+.
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G---~~V~~~~~~~~~--~~~~~~~~~~---------------------------- 48 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQG---FDIGITWHSDEE--GAKETAEEVR---------------------------- 48 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCChH--HHHHHHHHHH----------------------------
Confidence 5799999999999999999999998 788887665321 1122222111
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIRTA 193 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~~~ 193 (366)
....++.++.+|+.+.+ .+..+++ .+|+|||++|.... ...+...
T Consensus 49 ---------------~~~~~~~~~~~Dl~~~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~ 107 (256)
T PRK12743 49 ---------------SHGVRAEIRQLDLSDLP------EGAQALDKLIQRLGRIDVLVNNAGAMTKAPFLDMDFDEWRKI 107 (256)
T ss_pred ---------------hcCCceEEEEccCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHH
Confidence 11346888999999976 5555443 57999999997431 2345778
Q ss_pred HHHHHHHHHHHHHHHHhc----CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCC
Q psy17528 194 YNINVKGTQTILALAKRM----KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGK 269 (366)
Q Consensus 194 ~~~nv~~~~~ll~~a~~~----~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (366)
+++|+.+...+++++.+. +...++|++||....... .+
T Consensus 108 ~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~~~---------~~----------------------------- 149 (256)
T PRK12743 108 FTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEHTPL---------PG----------------------------- 149 (256)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeeccccCCC---------CC-----------------------------
Confidence 899999999998876542 123589999996432111 01
Q ss_pred CchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCc
Q psy17528 270 PNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDV 344 (366)
Q Consensus 270 ~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~ 344 (366)
...|+.+|...+.+++... ++++++.++||.+.++...... .........+. ....+
T Consensus 150 ~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~Pg~~~t~~~~~~~---------~~~~~~~~~~~---------~~~~~ 211 (256)
T PRK12743 150 ASAYTAAKHALGGLTKAMALELVEHGILVNAVAPGAIATPMNGMDD---------SDVKPDSRPGI---------PLGRP 211 (256)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCccccccC---------hHHHHHHHhcC---------CCCCC
Confidence 1689999999999887655 5899999999999987432110 00001111110 11124
Q ss_pred ccHHHHHHHHHHHHHhh
Q psy17528 345 VPGDRVINAMAALAWYF 361 (366)
Q Consensus 345 v~vdDva~ai~~~~~~~ 361 (366)
...+|++++++.++...
T Consensus 212 ~~~~dva~~~~~l~~~~ 228 (256)
T PRK12743 212 GDTHEIASLVAWLCSEG 228 (256)
T ss_pred CCHHHHHHHHHHHhCcc
Confidence 57899999999887644
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-13 Score=128.79 Aligned_cols=206 Identities=11% Similarity=0.129 Sum_probs=139.3
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++|+||||+|+||+++++.|.+.| .+|+++.|+.+. .+.+... ++.
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G---~~Vi~~~r~~~~---~~~~~~~--------l~~----------------- 55 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAG---AKVVLASRRVER---LKELRAE--------IEA----------------- 55 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHH--------HHh-----------------
Confidence 668999999999999999999999998 789999997431 1111111 111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~ 191 (366)
...++.++.+|+.+.+ ++..++. .+|+|||++|.... ...+.
T Consensus 56 ------------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~ 111 (258)
T PRK06949 56 ------------------EGGAAHVVSLDVTDYQ------SIKAAVAHAETEAGTIDILVNNSGVSTTQKLVDVTPADFD 111 (258)
T ss_pred ------------------cCCcEEEEEecCCCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHH
Confidence 1245788999999876 5655554 58999999996421 23466
Q ss_pred HHHHHHHHHHHHHHHHHHh----cC-------CCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHh
Q psy17528 192 TAYNINVKGTQTILALAKR----MK-------GLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIAL 260 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~----~~-------~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~ 260 (366)
..+++|+.++..+++.+.. .. ...++|++||..++...
T Consensus 112 ~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~------------------------------- 160 (258)
T PRK06949 112 FVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGLRVL------------------------------- 160 (258)
T ss_pred HHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECcccccCCC-------------------------------
Confidence 7888999999888876542 11 12589999997654211
Q ss_pred hhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeec
Q psy17528 261 LNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQ 335 (366)
Q Consensus 261 ~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~ 335 (366)
.....|+.+|...+.+++.+. .++++++++||.|+++..... |.. .. ....... +
T Consensus 161 -------~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pG~v~t~~~~~~--~~~------~~-~~~~~~~---~- 220 (258)
T PRK06949 161 -------PQIGLYCMSKAAVVHMTRAMALEWGRHGINVNAICPGYIDTEINHHH--WET------EQ-GQKLVSM---L- 220 (258)
T ss_pred -------CCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCCcCCcchhc--cCh------HH-HHHHHhc---C-
Confidence 011679999999999887765 589999999999998754311 110 00 0111110 0
Q ss_pred CCCCcccCcccHHHHHHHHHHHHHhh
Q psy17528 336 TDPNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 336 ~~~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
....+...+|+++++++++...
T Consensus 221 ----~~~~~~~p~~~~~~~~~l~~~~ 242 (258)
T PRK06949 221 ----PRKRVGKPEDLDGLLLLLAADE 242 (258)
T ss_pred ----CCCCCcCHHHHHHHHHHHhChh
Confidence 1234666799999999987644
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-13 Score=127.76 Aligned_cols=205 Identities=13% Similarity=0.088 Sum_probs=132.1
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEE-EcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILL-IRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~-~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
+++++||||+|+||++++++|++.| ++|+++ .|+.. ..+...+.+.
T Consensus 1 ~~~~lItGa~g~iG~~l~~~l~~~g---~~v~~~~~~~~~---~~~~~~~~~~--------------------------- 47 (247)
T PRK09730 1 MAIALVTGGSRGIGRATALLLAQEG---YTVAVNYQQNLH---AAQEVVNLIT--------------------------- 47 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCChH---HHHHHHHHHH---------------------------
Confidence 3689999999999999999999998 677664 34321 1111111100
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh--------hhhHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF--------DEHIR 191 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~--------~~~~~ 191 (366)
....++.++.+|+.+.+ .+.++++ .+|+|||++|.... ...+.
T Consensus 48 ----------------~~~~~~~~~~~D~~d~~------~i~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~ 105 (247)
T PRK09730 48 ----------------QAGGKAFVLQADISDEN------QVVAMFTAIDQHDEPLAALVNNAGILFTQCTVENLTAERIN 105 (247)
T ss_pred ----------------hCCCeEEEEEccCCCHH------HHHHHHHHHHHhCCCCCEEEECCCCCCCCCccccCCHHHHH
Confidence 11245778999999987 5666554 46899999996421 23456
Q ss_pred HHHHHHHHHHHHHHHHHHhc------CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcc
Q psy17528 192 TAYNINVKGTQTILALAKRM------KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHI 265 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~------~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (366)
..++.|+.++..+.+.+.+. ....+||++||...+... |.
T Consensus 106 ~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~~~----------~~------------------------ 151 (247)
T PRK09730 106 RVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRLGA----------PG------------------------ 151 (247)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhccCC----------CC------------------------
Confidence 77889999987776654331 123579999997544211 00
Q ss_pred cCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCc
Q psy17528 266 IGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNI 340 (366)
Q Consensus 266 ~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~ 340 (366)
....|+.+|...|.+++... ++++++++||+.+|++...... . ...........+
T Consensus 152 ---~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~i~pg~~~~~~~~~~~-----~---~~~~~~~~~~~~--------- 211 (247)
T PRK09730 152 ---EYVDYAASKGAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASGG-----E---PGRVDRVKSNIP--------- 211 (247)
T ss_pred ---cccchHhHHHHHHHHHHHHHHHHHHhCeEEEEEEeCCCcCcccccCC-----C---HHHHHHHHhcCC---------
Confidence 01469999999998887654 5899999999999998543111 0 111111111111
Q ss_pred ccCcccHHHHHHHHHHHHHhh
Q psy17528 341 SMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 341 ~~~~v~vdDva~ai~~~~~~~ 361 (366)
.......+|++++++.++...
T Consensus 212 ~~~~~~~~dva~~~~~~~~~~ 232 (247)
T PRK09730 212 MQRGGQPEEVAQAIVWLLSDK 232 (247)
T ss_pred CCCCcCHHHHHHHHHhhcChh
Confidence 111347899999999888654
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-13 Score=134.65 Aligned_cols=203 Identities=16% Similarity=0.137 Sum_probs=136.8
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++|+||||+|.||.+++++|++.| .+|+++.|+... .+.+.+. ++
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G---~~Vvl~~R~~~~---l~~~~~~--------~~------------------ 52 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRG---ARLVLAARDEEA---LQAVAEE--------CR------------------ 52 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCC---CEEEEEECCHHH---HHHHHHH--------HH------------------
Confidence 567899999999999999999999998 789999997432 1111111 11
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH-------hCcCEEEEcCcccCh-------hhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI-------SQTTIIFHIAATVRF-------DEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~-------~~~d~Vih~a~~~~~-------~~~~~ 191 (366)
....++.++.+|+++.+ ++.+++ ..+|++|||||.... ...++
T Consensus 53 -----------------~~g~~~~~~~~Dv~d~~------~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~e~~~ 109 (330)
T PRK06139 53 -----------------ALGAEVLVVPTDVTDAD------QVKALATQAASFGGRIDVWVNNVGVGAVGRFEETPIEAHE 109 (330)
T ss_pred -----------------hcCCcEEEEEeeCCCHH------HHHHHHHHHHHhcCCCCEEEECCCcCCCCCcccCCHHHHH
Confidence 11346778899999976 666655 357999999996421 23456
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
..+++|+.++..+.+.+... .+..++|++||...+... |
T Consensus 110 ~~~~vN~~g~~~~~~~~lp~~~~~~~g~iV~isS~~~~~~~----------p---------------------------- 151 (330)
T PRK06139 110 QVIQTNLIGYMRDAHAALPIFKKQGHGIFINMISLGGFAAQ----------P---------------------------- 151 (330)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhcCCC----------C----------------------------
Confidence 78999999988877665321 134589999997654221 1
Q ss_pred CCchHHHHHHHHHHHHHHhc------CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 269 KPNSYTLTKATAEDLVRQVG------HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~------~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
....|+.+|...+.+.+... .++.++.+.|+.|.++.......+ .+. ......
T Consensus 152 ~~~~Y~asKaal~~~~~sL~~El~~~~gI~V~~v~Pg~v~T~~~~~~~~~---------------~~~------~~~~~~ 210 (330)
T PRK06139 152 YAAAYSASKFGLRGFSEALRGELADHPDIHVCDVYPAFMDTPGFRHGANY---------------TGR------RLTPPP 210 (330)
T ss_pred CchhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCccCccccccccc---------------ccc------cccCCC
Confidence 12679999997666555443 379999999999988743210000 000 001122
Q ss_pred CcccHHHHHHHHHHHHHhhh
Q psy17528 343 DVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~~ 362 (366)
.+...+|+|++++.+++++.
T Consensus 211 ~~~~pe~vA~~il~~~~~~~ 230 (330)
T PRK06139 211 PVYDPRRVAKAVVRLADRPR 230 (330)
T ss_pred CCCCHHHHHHHHHHHHhCCC
Confidence 46788999999998887653
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.7e-14 Score=129.55 Aligned_cols=208 Identities=17% Similarity=0.173 Sum_probs=133.5
Q ss_pred eEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccccc
Q psy17528 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNYF 129 (366)
Q Consensus 50 ~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (366)
+|+||||+|+||.++++.|++.| ++|++++|+... ..+.+.+.+. ..
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G---~~v~~~~r~~~~--~~~~~~~~~~--------~~-------------------- 47 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQG---AKVFLTDINDAA--GLDAFAAEIN--------AA-------------------- 47 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCcch--HHHHHHHHHH--------hc--------------------
Confidence 48999999999999999999998 789999987321 1122221111 00
Q ss_pred chhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHHHHHH
Q psy17528 130 NDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIRTAYN 195 (366)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~~~~~ 195 (366)
. ....+.++.+|+.+.+ .+.++++ .+|+|||+||.... .......++
T Consensus 48 -----------~--~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~ 108 (251)
T PRK07069 48 -----------H--GEGVAFAAVQDVTDEA------QWQALLAQAADAMGGLSVLVNNAGVGSFGAIEQIELDEWRRVMA 108 (251)
T ss_pred -----------C--CCceEEEEEeecCCHH------HHHHHHHHHHHHcCCccEEEECCCcCCCCChhhCCHHHHHHHHH
Confidence 0 0123446788999876 5555443 57999999997532 224566778
Q ss_pred HHHH----HHHHHHHHHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCc
Q psy17528 196 INVK----GTQTILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPN 271 (366)
Q Consensus 196 ~nv~----~~~~ll~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (366)
+|+. .++.++..+.+. +.++|+++||...+.... ...
T Consensus 109 ~n~~~~~~~~~~~~~~~~~~-~~~~ii~~ss~~~~~~~~--------------------------------------~~~ 149 (251)
T PRK07069 109 INVESIFLGCKHALPYLRAS-QPASIVNISSVAAFKAEP--------------------------------------DYT 149 (251)
T ss_pred HhhHHHHHHHHHHHHHHhhc-CCcEEEEecChhhccCCC--------------------------------------CCc
Confidence 8887 666667776654 567999999986653211 015
Q ss_pred hHHHHHHHHHHHHHHhc-------CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCc
Q psy17528 272 SYTLTKATAEDLVRQVG-------HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDV 344 (366)
Q Consensus 272 ~Y~~sK~~~E~~l~~~~-------~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~ 344 (366)
.|+.+|...+.+++.+. .+++++.++|+.+.++....... ... .........++. ....+
T Consensus 150 ~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~pg~v~t~~~~~~~~---~~~-~~~~~~~~~~~~---------~~~~~ 216 (251)
T PRK07069 150 AYNASKAAVASLTKSIALDCARRGLDVRCNSIHPTFIRTGIVDPIFQ---RLG-EEEATRKLARGV---------PLGRL 216 (251)
T ss_pred hhHHHHHHHHHHHHHHHHHhcccCCcEEEEEEeecccCCcchhHHhh---hcc-chhHHHHHhccC---------CCCCC
Confidence 79999999998887653 34888999999998875432100 000 001111111111 12345
Q ss_pred ccHHHHHHHHHHHHHhh
Q psy17528 345 VPGDRVINAMAALAWYF 361 (366)
Q Consensus 345 v~vdDva~ai~~~~~~~ 361 (366)
.+++|++++++.++..+
T Consensus 217 ~~~~~va~~~~~l~~~~ 233 (251)
T PRK07069 217 GEPDDVAHAVLYLASDE 233 (251)
T ss_pred cCHHHHHHHHHHHcCcc
Confidence 67899999999877544
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-13 Score=127.89 Aligned_cols=207 Identities=16% Similarity=0.153 Sum_probs=138.5
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++|+||||+|+||.+++++|++.| ++|++++|+... .+.+.+.+. .
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G---~~Vi~~~r~~~~---~~~~~~~~~--------~----------------- 54 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQG---AHVIVSSRKLDG---CQAVADAIV--------A----------------- 54 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHHHH--------h-----------------
Confidence 567899999999999999999999998 789999986421 122222111 0
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC--------hhhhH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR--------FDEHI 190 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~--------~~~~~ 190 (366)
...++.++.+|+.+.+ .+..+++ .+|+|||+||... ....+
T Consensus 55 ------------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~ 110 (252)
T PRK07035 55 ------------------AGGKAEALACHIGEME------QIDALFAHIRERHGRLDILVNNAAANPYFGHILDTDLGAF 110 (252)
T ss_pred ------------------cCCeEEEEEcCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHH
Confidence 1235678899999876 5554443 5799999998532 12345
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 191 RTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
+..++.|+.+...+++.+.+. .+..+++++||.+.....
T Consensus 111 ~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~-------------------------------------- 152 (252)
T PRK07035 111 QKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVASVNGVSPG-------------------------------------- 152 (252)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECchhhcCCC--------------------------------------
Confidence 678889999988877665321 245789999997544211
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
+....|+.+|...+.+++.+. +|++++.+.||.|..+.... +.. . ........... ...
T Consensus 153 ~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~i~PG~v~t~~~~~---~~~---~-~~~~~~~~~~~---------~~~ 216 (252)
T PRK07035 153 DFQGIYSITKAAVISMTKAFAKECAPFGIRVNALLPGLTDTKFASA---LFK---N-DAILKQALAHI---------PLR 216 (252)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeccccCccccc---ccC---C-HHHHHHHHccC---------CCC
Confidence 011679999999999988776 58999999999987653221 110 0 11111111111 123
Q ss_pred CcccHHHHHHHHHHHHHhh
Q psy17528 343 DVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~ 361 (366)
.+...+|+|++++.++...
T Consensus 217 ~~~~~~~va~~~~~l~~~~ 235 (252)
T PRK07035 217 RHAEPSEMAGAVLYLASDA 235 (252)
T ss_pred CcCCHHHHHHHHHHHhCcc
Confidence 3667899999999988654
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.8e-14 Score=130.67 Aligned_cols=209 Identities=13% Similarity=0.113 Sum_probs=139.4
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||++++++|++.| .+|++++|+.+. ..+.+.+. +..
T Consensus 6 ~~~k~~lVtG~s~gIG~~ia~~l~~~G---~~v~~~~r~~~~--~~~~~~~~--------l~~----------------- 55 (254)
T PRK06114 6 LDGQVAFVTGAGSGIGQRIAIGLAQAG---ADVALFDLRTDD--GLAETAEH--------IEA----------------- 55 (254)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCcch--HHHHHHHH--------HHh-----------------
Confidence 578999999999999999999999998 789999987532 11112111 111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~ 191 (366)
...++.++.+|+.+.+ .+.+++. .+|++|||||.... ...++
T Consensus 56 ------------------~~~~~~~~~~D~~~~~------~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~ 111 (254)
T PRK06114 56 ------------------AGRRAIQIAADVTSKA------DLRAAVARTEAELGALTLAVNAAGIANANPAEEMEEEQWQ 111 (254)
T ss_pred ------------------cCCceEEEEcCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChHhCCHHHHH
Confidence 1246778899999876 5555443 46999999997431 24567
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
..+++|+.++..+++.+.+. .+..++|++||......... .
T Consensus 112 ~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~------------------------------------~ 155 (254)
T PRK06114 112 TVMDINLTGVFLSCQAEARAMLENGGGSIVNIASMSGIIVNRG------------------------------------L 155 (254)
T ss_pred HHHhhcchhhHHHHHHHHHHHHhcCCcEEEEECchhhcCCCCC------------------------------------C
Confidence 78899999988777765321 24468999999764421100 0
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
....|+.+|...+.+++... +|+++++++||.+.++.... +.. ........... ...-
T Consensus 156 ~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~PG~i~t~~~~~-~~~-------~~~~~~~~~~~---------p~~r 218 (254)
T PRK06114 156 LQAHYNASKAGVIHLSKSLAMEWVGRGIRVNSISPGYTATPMNTR-PEM-------VHQTKLFEEQT---------PMQR 218 (254)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeecCccCccccc-ccc-------hHHHHHHHhcC---------CCCC
Confidence 01579999998888877664 68999999999998875321 110 01111111111 1123
Q ss_pred cccHHHHHHHHHHHHHhh
Q psy17528 344 VVPGDRVINAMAALAWYF 361 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~~ 361 (366)
+...+|+++++++++...
T Consensus 219 ~~~~~dva~~~~~l~s~~ 236 (254)
T PRK06114 219 MAKVDEMVGPAVFLLSDA 236 (254)
T ss_pred CcCHHHHHHHHHHHcCcc
Confidence 567899999999987643
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-13 Score=129.23 Aligned_cols=205 Identities=15% Similarity=0.098 Sum_probs=134.8
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||.+++++|.+.| ++|+++.|+... ..+.+. .
T Consensus 5 l~~k~~lItGas~gIG~~~a~~l~~~G---~~v~~~~~~~~~--~~~~l~------------~----------------- 50 (255)
T PRK06463 5 FKGKVALITGGTRGIGRAIAEAFLREG---AKVAVLYNSAEN--EAKELR------------E----------------- 50 (255)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEeCCcHH--HHHHHH------------h-----------------
Confidence 467999999999999999999999998 788877665321 111110 0
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
.++.++.+|+.+.+ .+..+++ ++|+||||||... ....++
T Consensus 51 --------------------~~~~~~~~Dl~~~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~ 104 (255)
T PRK06463 51 --------------------KGVFTIKCDVGNRD------QVKKSKEVVEKEFGRVDVLVNNAGIMYLMPFEEFDEEKYN 104 (255)
T ss_pred --------------------CCCeEEEecCCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHH
Confidence 14678899999976 5655543 5799999999742 123456
Q ss_pred HHHHHHHHHHHHHHHH----HHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 192 TAYNINVKGTQTILAL----AKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~----a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
..+++|+.++..+.+. +.+. +..++|++||..++....
T Consensus 105 ~~~~~n~~~~~~~~~~~l~~~~~~-~~g~iv~isS~~~~~~~~------------------------------------- 146 (255)
T PRK06463 105 KMIKINLNGAIYTTYEFLPLLKLS-KNGAIVNIASNAGIGTAA------------------------------------- 146 (255)
T ss_pred HHHhHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcCHHhCCCCC-------------------------------------
Confidence 7889999996555443 3333 456899999986552110
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
.....|+.+|...+.+++... .++++++++||.|-.+....... . .. ......... ......
T Consensus 147 ~~~~~Y~asKaa~~~~~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~--~--~~-~~~~~~~~~--------~~~~~~ 213 (255)
T PRK06463 147 EGTTFYAITKAGIIILTRRLAFELGKYGIRVNAVAPGWVETDMTLSGKS--Q--EE-AEKLRELFR--------NKTVLK 213 (255)
T ss_pred CCccHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCCCchhhcccC--c--cc-hHHHHHHHH--------hCCCcC
Confidence 001579999999999887765 58999999999986553211000 0 00 000111111 111233
Q ss_pred CcccHHHHHHHHHHHHHhh
Q psy17528 343 DVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~ 361 (366)
.+...+|++++++.++...
T Consensus 214 ~~~~~~~va~~~~~l~s~~ 232 (255)
T PRK06463 214 TTGKPEDIANIVLFLASDD 232 (255)
T ss_pred CCcCHHHHHHHHHHHcChh
Confidence 4677999999999988654
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.4e-13 Score=128.01 Aligned_cols=167 Identities=16% Similarity=0.190 Sum_probs=114.5
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
++++|+||||+|+||.+++++|++.|. .+|+++.|+.+.. .+.+.+.+. .
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg--~~V~~~~r~~~~~--~~~~~~~l~--------~------------------ 56 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAP--ARVVLAALPDDPR--RDAAVAQMK--------A------------------ 56 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCC--CeEEEEeCCcchh--HHHHHHHHH--------h------------------
Confidence 478999999999999999999999841 6899999986420 111111111 0
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh------CcCEEEEcCcccChh-------hhHHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS------QTTIIFHIAATVRFD-------EHIRTA 193 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~------~~d~Vih~a~~~~~~-------~~~~~~ 193 (366)
. ...++.++.+|+.+.+ ++.++++ ++|++||++|..... ....+.
T Consensus 57 --------------~--~~~~v~~~~~D~~~~~------~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~ 114 (253)
T PRK07904 57 --------------A--GASSVEVIDFDALDTD------SHPKVIDAAFAGGDVDVAIVAFGLLGDAEELWQNQRKAVQI 114 (253)
T ss_pred --------------c--CCCceEEEEecCCChH------HHHHHHHHHHhcCCCCEEEEeeecCCchhhcccCHHHHHHH
Confidence 0 1236889999999876 4443332 689999999875321 111246
Q ss_pred HHHHHHHHHHH----HHHHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCC
Q psy17528 194 YNINVKGTQTI----LALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGK 269 (366)
Q Consensus 194 ~~~nv~~~~~l----l~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (366)
+++|+.+...+ +..+.+. +..+||++||..++... + .
T Consensus 115 ~~vN~~~~~~l~~~l~~~~~~~-~~~~iv~isS~~g~~~~----------~----------------------------~ 155 (253)
T PRK07904 115 AEINYTAAVSVGVLLGEKMRAQ-GFGQIIAMSSVAGERVR----------R----------------------------S 155 (253)
T ss_pred HHHHhHhHHHHHHHHHHHHHhc-CCceEEEEechhhcCCC----------C----------------------------C
Confidence 89999887764 4445544 56799999998643211 0 0
Q ss_pred CchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccC
Q psy17528 270 PNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPT 304 (366)
Q Consensus 270 ~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~ 304 (366)
...|+.+|+....+.+... +++++++++||.+..+
T Consensus 156 ~~~Y~~sKaa~~~~~~~l~~el~~~~i~v~~v~Pg~v~t~ 195 (253)
T PRK07904 156 NFVYGSTKAGLDGFYLGLGEALREYGVRVLVVRPGQVRTR 195 (253)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhhcCCEEEEEeeCceecc
Confidence 1569999998887665543 6899999999999875
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.6e-14 Score=132.37 Aligned_cols=205 Identities=14% Similarity=0.118 Sum_probs=139.1
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|+++||||+|.||.+++++|++.| .+|+++.|+.. +...+...
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G---~~vv~~~~~~~-----~~~~~~~~-------------------------- 51 (251)
T PRK12481 6 LNGKVAIITGCNTGLGQGMAIGLAKAG---ADIVGVGVAEA-----PETQAQVE-------------------------- 51 (251)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEecCchH-----HHHHHHHH--------------------------
Confidence 568999999999999999999999999 78888877532 11111110
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
....++.++.+|+++.+ ++..+++ .+|++|||||... ....++
T Consensus 52 -----------------~~~~~~~~~~~Dl~~~~------~~~~~~~~~~~~~g~iD~lv~~ag~~~~~~~~~~~~~~~~ 108 (251)
T PRK12481 52 -----------------ALGRKFHFITADLIQQK------DIDSIVSQAVEVMGHIDILINNAGIIRRQDLLEFGNKDWD 108 (251)
T ss_pred -----------------HcCCeEEEEEeCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHH
Confidence 01246788999999987 6665553 5799999999743 134567
Q ss_pred HHHHHHHHHHHHHHHHHHh----cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 192 TAYNINVKGTQTILALAKR----MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~----~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
..+++|+.++..+.+.+.+ .+...++|++||...+....
T Consensus 109 ~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~------------------------------------- 151 (251)
T PRK12481 109 DVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQGGI------------------------------------- 151 (251)
T ss_pred HHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcCCCC-------------------------------------
Confidence 7889999998888776543 22236899999986542211
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
....|+.+|...+.+++... +|++++.++||.|-.+....... . .......... ++ ..
T Consensus 152 -~~~~Y~asK~a~~~l~~~la~e~~~~girvn~v~PG~v~t~~~~~~~~----~---~~~~~~~~~~----~p-----~~ 214 (251)
T PRK12481 152 -RVPSYTASKSAVMGLTRALATELSQYNINVNAIAPGYMATDNTAALRA----D---TARNEAILER----IP-----AS 214 (251)
T ss_pred -CCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCCccCchhhccc----C---hHHHHHHHhc----CC-----CC
Confidence 01579999999999887655 68999999999987653221100 0 0011111111 11 12
Q ss_pred CcccHHHHHHHHHHHHHhh
Q psy17528 343 DVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~ 361 (366)
.+...+|++++++.++...
T Consensus 215 ~~~~peeva~~~~~L~s~~ 233 (251)
T PRK12481 215 RWGTPDDLAGPAIFLSSSA 233 (251)
T ss_pred CCcCHHHHHHHHHHHhCcc
Confidence 3678899999999988643
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-13 Score=128.89 Aligned_cols=211 Identities=13% Similarity=0.121 Sum_probs=140.8
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccE-EEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRK-IILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~-V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
+++++|+||||+|+||.+++++|++.| ++ |+++.|+.... +.+.+. +.
T Consensus 4 ~~~k~vlItGa~g~iG~~la~~l~~~G---~~~V~~~~r~~~~~---~~~~~~--------l~----------------- 52 (260)
T PRK06198 4 LDGKVALVTGGTQGLGAAIARAFAERG---AAGLVICGRNAEKG---EAQAAE--------LE----------------- 52 (260)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCC---CCeEEEEcCCHHHH---HHHHHH--------HH-----------------
Confidence 568999999999999999999999998 55 88998874321 111111 10
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHI 190 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~ 190 (366)
....++.++.+|+.+.+ .+.++++ ++|+|||++|... ....+
T Consensus 53 ------------------~~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~ 108 (260)
T PRK06198 53 ------------------ALGAKAVFVQADLSDVE------DCRRVVAAADEAFGRLDALVNAAGLTDRGTILDTSPELF 108 (260)
T ss_pred ------------------hcCCeEEEEEccCCCHH------HHHHHHHHHHHHhCCCCEEEECCCcCCCCChhhCCHHHH
Confidence 11246778899999876 5555543 5899999999643 12344
Q ss_pred HHHHHHHHHHHHHHHHHHHhc----CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 191 RTAYNINVKGTQTILALAKRM----KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~----~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
+..+++|+.+...+++.+.+. ....++|++||..++....
T Consensus 109 ~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~~------------------------------------ 152 (260)
T PRK06198 109 DRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHGGQP------------------------------------ 152 (260)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCCC------------------------------------
Confidence 667899999999888776432 1235799999987653221
Q ss_pred CCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCC-CccccccchHHHHHHHHhcCcceeecCCCCc
Q psy17528 267 GGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPM-PLWIKGFNGVMALALGAGTGLIRVVQTDPNI 340 (366)
Q Consensus 267 ~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~ 340 (366)
....|+.+|...|.+++... .++.++.++|+.++++..... ..+.. ....++..... ...
T Consensus 153 --~~~~Y~~sK~a~~~~~~~~a~e~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~---~~~~~~~~~~~---------~~~ 218 (260)
T PRK06198 153 --FLAAYCASKGALATLTRNAAYALLRNRIRVNGLNIGWMATEGEDRIQREFHG---APDDWLEKAAA---------TQP 218 (260)
T ss_pred --CcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEeeccccCcchhhhhhhccC---CChHHHHHHhc---------cCC
Confidence 01679999999999887654 578999999999998753210 00000 00111111111 112
Q ss_pred ccCcccHHHHHHHHHHHHHhh
Q psy17528 341 SMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 341 ~~~~v~vdDva~ai~~~~~~~ 361 (366)
...+++.+|++++++.++...
T Consensus 219 ~~~~~~~~~~a~~~~~l~~~~ 239 (260)
T PRK06198 219 FGRLLDPDEVARAVAFLLSDE 239 (260)
T ss_pred ccCCcCHHHHHHHHHHHcChh
Confidence 345789999999999987544
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.1e-14 Score=131.67 Aligned_cols=159 Identities=13% Similarity=0.120 Sum_probs=116.3
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+|+++||||+|+||.+++++|++.| .+|++++|+... +... .
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G---~~V~~~~r~~~~------~~~~---------~-------------------- 42 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAG---YEVWATARKAED------VEAL---------A-------------------- 42 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCC---CEEEEEeCCHHH------HHHH---------H--------------------
Confidence 4789999999999999999999998 889999987421 1110 0
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIRTA 193 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~~~ 193 (366)
...+.++.+|+.+.+ .+.++++ ++|+|||+||... ....++..
T Consensus 43 -----------------~~~~~~~~~Dl~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~ 99 (274)
T PRK05693 43 -----------------AAGFTAVQLDVNDGA------ALARLAEELEAEHGGLDVLINNAGYGAMGPLLDGGVEAMRRQ 99 (274)
T ss_pred -----------------HCCCeEEEeeCCCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHH
Confidence 023567889999876 5555442 5799999999642 12456778
Q ss_pred HHHHHHHHHHHHHHHHhc--CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCc
Q psy17528 194 YNINVKGTQTILALAKRM--KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPN 271 (366)
Q Consensus 194 ~~~nv~~~~~ll~~a~~~--~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (366)
+++|+.++..+++.+.+. .+..++|++||..+.... +...
T Consensus 100 ~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~--------------------------------------~~~~ 141 (274)
T PRK05693 100 FETNVFAVVGVTRALFPLLRRSRGLVVNIGSVSGVLVT--------------------------------------PFAG 141 (274)
T ss_pred HHHHhHHHHHHHHHHHHHHhhcCCEEEEECCccccCCC--------------------------------------CCcc
Confidence 899999998888876431 133579999997654211 0126
Q ss_pred hHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCC
Q psy17528 272 SYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTL 305 (366)
Q Consensus 272 ~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~ 305 (366)
.|+.+|...+.+.+... .|+++++++||.|.++.
T Consensus 142 ~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~ 180 (274)
T PRK05693 142 AYCASKAAVHALSDALRLELAPFGVQVMEVQPGAIASQF 180 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCcccccc
Confidence 79999999888876544 68999999999998764
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-13 Score=130.03 Aligned_cols=207 Identities=13% Similarity=0.122 Sum_probs=136.3
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCH-HHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSI-TQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
+++++++||||+|+||.+++++|++.| .+|+++.|+...... ...+.+. .+.+.
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~----------------- 58 (273)
T PRK08278 4 LSGKTLFITGASRGIGLAIALRAARDG---ANIVIAAKTAEPHPKLPGTIHTA-----AEEIE----------------- 58 (273)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEecccccccchhhHHHHH-----HHHHH-----------------
Confidence 567899999999999999999999998 789999997543110 0111110 00111
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHI 190 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~ 190 (366)
....++.++.+|+.+.+ ++.+++. .+|+|||+||.... ...+
T Consensus 59 ------------------~~~~~~~~~~~D~~~~~------~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~ 114 (273)
T PRK08278 59 ------------------AAGGQALPLVGDVRDED------QVAAAVAKAVERFGGIDICVNNASAINLTGTEDTPMKRF 114 (273)
T ss_pred ------------------hcCCceEEEEecCCCHH------HHHHHHHHHHHHhCCCCEEEECCCCcCCCCcccCCHHHH
Confidence 11246788899999986 5665554 68999999996421 2345
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 191 RTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
+..+++|+.++..+++++.+. .+-.+++++||....... +.++
T Consensus 115 ~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~-------~~~~--------------------------- 160 (273)
T PRK08278 115 DLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNLDPK-------WFAP--------------------------- 160 (273)
T ss_pred HHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhcccc-------ccCC---------------------------
Confidence 678899999999999987642 223478888875322110 0011
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
...|+.+|...|.+++.+. +++.++.+.|+.++.+.. ......+ .....
T Consensus 161 --~~~Y~~sK~a~~~~~~~la~el~~~~I~v~~i~Pg~~i~t~~----------------~~~~~~~--------~~~~~ 214 (273)
T PRK08278 161 --HTAYTMAKYGMSLCTLGLAEEFRDDGIAVNALWPRTTIATAA----------------VRNLLGG--------DEAMR 214 (273)
T ss_pred --cchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCccccHH----------------HHhcccc--------ccccc
Confidence 1689999999999998776 589999999984322210 0000000 01122
Q ss_pred CcccHHHHHHHHHHHHHhh
Q psy17528 343 DVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~ 361 (366)
.+...+|+|++++.++...
T Consensus 215 ~~~~p~~va~~~~~l~~~~ 233 (273)
T PRK08278 215 RSRTPEIMADAAYEILSRP 233 (273)
T ss_pred ccCCHHHHHHHHHHHhcCc
Confidence 3678899999999887654
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-13 Score=127.58 Aligned_cols=201 Identities=13% Similarity=0.150 Sum_probs=133.2
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++|+||||+|+||++++++|++.| .+|+++.|.... ..+.+.+ .
T Consensus 4 ~~~k~vlItGasggIG~~~a~~l~~~G---~~v~~~~~~~~~--~~~~l~~------------~---------------- 50 (237)
T PRK12742 4 FTGKKVLVLGGSRGIGAAIVRRFVTDG---ANVRFTYAGSKD--AAERLAQ------------E---------------- 50 (237)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEecCCCHH--HHHHHHH------------H----------------
Confidence 567899999999999999999999998 778777664211 1111111 0
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh---CcCEEEEcCcccCh-------hhhHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS---QTTIIFHIAATVRF-------DEHIRTAYN 195 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~---~~d~Vih~a~~~~~-------~~~~~~~~~ 195 (366)
..+.++.+|+.+.+ .+..++. .+|++||+||.... ...++..++
T Consensus 51 --------------------~~~~~~~~D~~~~~------~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~ 104 (237)
T PRK12742 51 --------------------TGATAVQTDSADRD------AVIDVVRKSGALDILVVNAGIAVFGDALELDADDIDRLFK 104 (237)
T ss_pred --------------------hCCeEEecCCCCHH------HHHHHHHHhCCCcEEEECCCCCCCCCcccCCHHHHHHHHh
Confidence 12356788998865 4555543 58999999996421 235677899
Q ss_pred HHHHHHHHHHHHHHh-cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHH
Q psy17528 196 INVKGTQTILALAKR-MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYT 274 (366)
Q Consensus 196 ~nv~~~~~ll~~a~~-~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~ 274 (366)
+|+.++..+++.+.+ .....++|++||...... +. +....|+
T Consensus 105 ~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~---------~~----------------------------~~~~~Y~ 147 (237)
T PRK12742 105 INIHAPYHASVEAARQMPEGGRIIIIGSVNGDRM---------PV----------------------------AGMAAYA 147 (237)
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeccccccC---------CC----------------------------CCCcchH
Confidence 999999888765543 223468999999754210 00 0016799
Q ss_pred HHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHH
Q psy17528 275 LTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDR 349 (366)
Q Consensus 275 ~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdD 349 (366)
.+|...|.+++... +++.+++++||.+..+..... . ... ...... .....+...+|
T Consensus 148 ~sKaa~~~~~~~la~~~~~~gi~v~~v~Pg~~~t~~~~~~-------~---~~~-~~~~~~--------~~~~~~~~p~~ 208 (237)
T PRK12742 148 ASKSALQGMARGLARDFGPRGITINVVQPGPIDTDANPAN-------G---PMK-DMMHSF--------MAIKRHGRPEE 208 (237)
T ss_pred HhHHHHHHHHHHHHHHHhhhCeEEEEEecCcccCCccccc-------c---HHH-HHHHhc--------CCCCCCCCHHH
Confidence 99999999987755 689999999999987643210 0 011 111110 01123567899
Q ss_pred HHHHHHHHHHhh
Q psy17528 350 VINAMAALAWYF 361 (366)
Q Consensus 350 va~ai~~~~~~~ 361 (366)
+++++..++...
T Consensus 209 ~a~~~~~l~s~~ 220 (237)
T PRK12742 209 VAGMVAWLAGPE 220 (237)
T ss_pred HHHHHHHHcCcc
Confidence 999999887644
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.9e-14 Score=130.13 Aligned_cols=208 Identities=13% Similarity=0.100 Sum_probs=138.7
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++|+||||+|+||.+++++|++.| .+|+++.|+... .+++.+.+. .
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G---~~v~~~~r~~~~---~~~~~~~~~--------~----------------- 53 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREG---AKVVVADRDAAG---GEETVALIR--------E----------------- 53 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcC---CEEEEEeCCHHH---HHHHHHHHH--------h-----------------
Confidence 568999999999999999999999998 789999997532 111111111 0
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC--------hhhhH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR--------FDEHI 190 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~--------~~~~~ 190 (366)
...++.++.+|+.+.+ .+..+++ .+|+|||++|... ....+
T Consensus 54 ------------------~~~~~~~~~~D~~~~~------~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~ 109 (253)
T PRK06172 54 ------------------AGGEALFVACDVTRDA------EVKALVEQTIAAYGRLDYAFNNAGIEIEQGRLAEGSEAEF 109 (253)
T ss_pred ------------------cCCceEEEEcCCCCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCChhhCCHHHH
Confidence 1246888999999876 5555543 4699999999632 12345
Q ss_pred HHHHHHHHHHHHHHHHHHHh---cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 191 RTAYNINVKGTQTILALAKR---MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~---~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
+..+++|+.+...+++.+.. ..+..+++++||..++....
T Consensus 110 ~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~~------------------------------------- 152 (253)
T PRK06172 110 DAIMGVNVKGVWLCMKYQIPLMLAQGGGAIVNTASVAGLGAAP------------------------------------- 152 (253)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECchhhccCCC-------------------------------------
Confidence 67788999998776664332 12446899999976543211
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
....|+.+|...+.+.+.+. ++++++++.||.|-.+....... ............ ....
T Consensus 153 -~~~~Y~~sKaa~~~~~~~la~e~~~~~i~v~~i~PG~v~t~~~~~~~~------~~~~~~~~~~~~---------~~~~ 216 (253)
T PRK06172 153 -KMSIYAASKHAVIGLTKSAAIEYAKKGIRVNAVCPAVIDTDMFRRAYE------ADPRKAEFAAAM---------HPVG 216 (253)
T ss_pred -CCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhcc------cChHHHHHHhcc---------CCCC
Confidence 11679999999998887765 57999999999987664322110 001111111110 1112
Q ss_pred CcccHHHHHHHHHHHHHhh
Q psy17528 343 DVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~ 361 (366)
.+...+|+++.+++++...
T Consensus 217 ~~~~p~~ia~~~~~l~~~~ 235 (253)
T PRK06172 217 RIGKVEEVASAVLYLCSDG 235 (253)
T ss_pred CccCHHHHHHHHHHHhCcc
Confidence 3567899999999988654
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.8e-14 Score=135.00 Aligned_cols=181 Identities=12% Similarity=0.084 Sum_probs=117.5
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++|+||||+|+||.+++++|++.| .+|+++.|+.... .+...+ +...
T Consensus 14 ~~~k~vlItGas~gIG~~~a~~l~~~G---~~vi~~~r~~~~~--~~~~~~---------l~~~---------------- 63 (306)
T PRK06197 14 QSGRVAVVTGANTGLGYETAAALAAKG---AHVVLAVRNLDKG--KAAAAR---------ITAA---------------- 63 (306)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCC---CEEEEEeCCHHHH--HHHHHH---------HHHh----------------
Confidence 568999999999999999999999998 7899999974321 111111 1000
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-----hhhHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-----DEHIRTA 193 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-----~~~~~~~ 193 (366)
. ....+.++.+|+.+.+ .+..+++ ++|+||||||.... ...++..
T Consensus 64 ---------------~--~~~~~~~~~~Dl~d~~------~v~~~~~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~ 120 (306)
T PRK06197 64 ---------------T--PGADVTLQELDLTSLA------SVRAAADALRAAYPRIDLLINNAGVMYTPKQTTADGFELQ 120 (306)
T ss_pred ---------------C--CCCceEEEECCCCCHH------HHHHHHHHHHhhCCCCCEEEECCccccCCCccCCCCcchh
Confidence 0 1246788999999976 5655543 58999999996432 1244667
Q ss_pred HHHHHHHHH----HHHHHHHhcCCCcEEEEeeCcceec-CccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 194 YNINVKGTQ----TILALAKRMKGLKSFVHVSTAYCNC-DRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 194 ~~~nv~~~~----~ll~~a~~~~~~~~~v~iSS~~~~~-~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
+++|+.+.. .++..+++. +..++|++||...+. ...+.++.....+. .
T Consensus 121 ~~vN~~g~~~l~~~ll~~l~~~-~~~~iV~vSS~~~~~~~~~~~~~~~~~~~~--------------------------~ 173 (306)
T PRK06197 121 FGTNHLGHFALTGLLLDRLLPV-PGSRVVTVSSGGHRIRAAIHFDDLQWERRY--------------------------N 173 (306)
T ss_pred hhhhhHHHHHHHHHHHHHHhhC-CCCEEEEECCHHHhccCCCCccccCcccCC--------------------------C
Confidence 889999944 455555543 456999999985432 11111111000011 1
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEE--EecCccccCCC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICV--LRPSIVFPTLQ 306 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~i--lRp~~v~G~~~ 306 (366)
....|+.+|+..+.+.+.+. .++++++ +.||.|..+..
T Consensus 174 ~~~~Y~~SK~a~~~~~~~la~~l~~~~i~v~~v~~~PG~v~T~~~ 218 (306)
T PRK06197 174 RVAAYGQSKLANLLFTYELQRRLAAAGATTIAVAAHPGVSNTELA 218 (306)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEeCCCcccCccc
Confidence 12689999999998887655 4565554 47999977643
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.7e-14 Score=130.28 Aligned_cols=206 Identities=14% Similarity=0.122 Sum_probs=140.1
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++|+||||+|+||++++++|.+.| .+|++++|+... .+.+.+.+. .
T Consensus 9 l~~k~vlVtG~s~gIG~~la~~l~~~G---~~vv~~~r~~~~---~~~~~~~l~--------~----------------- 57 (255)
T PRK06113 9 LDGKCAIITGAGAGIGKEIAITFATAG---ASVVVSDINADA---ANHVVDEIQ--------Q----------------- 57 (255)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC---CeEEEEeCCHHH---HHHHHHHHH--------h-----------------
Confidence 468999999999999999999999998 788888886431 112211110 0
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh------hhhHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF------DEHIRT 192 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~------~~~~~~ 192 (366)
...++.++.+|+++.+ .+.+++. .+|+|||+||.... ...+..
T Consensus 58 ------------------~~~~~~~~~~D~~~~~------~i~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~ 113 (255)
T PRK06113 58 ------------------LGGQAFACRCDITSEQ------ELSALADFALSKLGKVDILVNNAGGGGPKPFDMPMADFRR 113 (255)
T ss_pred ------------------cCCcEEEEEccCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCCCCHHHHHH
Confidence 1235778899999876 5555443 57999999996421 244566
Q ss_pred HHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCC
Q psy17528 193 AYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGK 269 (366)
Q Consensus 193 ~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (366)
.+++|+.++..+++.+... .+..++|++||....... ..
T Consensus 114 ~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~--------------------------------------~~ 155 (255)
T PRK06113 114 AYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKN--------------------------------------IN 155 (255)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEecccccCCC--------------------------------------CC
Confidence 7899999999999887531 234589999997643111 01
Q ss_pred CchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCc
Q psy17528 270 PNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDV 344 (366)
Q Consensus 270 ~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~ 344 (366)
...|+.+|...+.+++... .++.++++.||.+..+.... . .. ..+....... .....+
T Consensus 156 ~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~t~~~~~---~---~~--~~~~~~~~~~---------~~~~~~ 218 (255)
T PRK06113 156 MTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKS---V---IT--PEIEQKMLQH---------TPIRRL 218 (255)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeccccccccccc---c---cC--HHHHHHHHhc---------CCCCCC
Confidence 1679999999999997765 67999999999987654221 0 00 1111111111 112346
Q ss_pred ccHHHHHHHHHHHHHhh
Q psy17528 345 VPGDRVINAMAALAWYF 361 (366)
Q Consensus 345 v~vdDva~ai~~~~~~~ 361 (366)
...+|++++++.++...
T Consensus 219 ~~~~d~a~~~~~l~~~~ 235 (255)
T PRK06113 219 GQPQDIANAALFLCSPA 235 (255)
T ss_pred cCHHHHHHHHHHHcCcc
Confidence 78899999999988643
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-13 Score=128.42 Aligned_cols=209 Identities=15% Similarity=0.154 Sum_probs=141.4
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|+++||||+|.||.+++++|.+.| .+|++++|+.+. .+.+.+. +...
T Consensus 7 ~~~k~~lItGa~~gIG~~~a~~l~~~G---~~v~~~~r~~~~---~~~~~~~--------l~~~---------------- 56 (257)
T PRK09242 7 LDGQTALITGASKGIGLAIAREFLGLG---ADVLIVARDADA---LAQARDE--------LAEE---------------- 56 (257)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHcC---CEEEEEeCCHHH---HHHHHHH--------HHhh----------------
Confidence 568999999999999999999999998 789999997432 1111111 1110
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
. ...++.++.+|+.+.+ ++..+++ .+|+|||++|... ....++
T Consensus 57 ---------------~--~~~~~~~~~~Dl~~~~------~~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~ 113 (257)
T PRK09242 57 ---------------F--PEREVHGLAADVSDDE------DRRAILDWVEDHWDGLHILVNNAGGNIRKAAIDYTEDEWR 113 (257)
T ss_pred ---------------C--CCCeEEEEECCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHH
Confidence 0 1246788899999876 5544443 5799999999632 234567
Q ss_pred HHHHHHHHHHHHHHHHHHh---cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKR---MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~---~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
..+++|+.++..+++.+.+ ..+..++|++||...+....
T Consensus 114 ~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~~~~-------------------------------------- 155 (257)
T PRK09242 114 GIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSVSGLTHVR-------------------------------------- 155 (257)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECccccCCCCC--------------------------------------
Confidence 7889999999998887643 12456899999986553211
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
....|+.+|...+.+++... ++++++.++||.+.++..... . . ...+........ ...-
T Consensus 156 ~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~i~t~~~~~~---~---~-~~~~~~~~~~~~---------~~~~ 219 (257)
T PRK09242 156 SGAPYGMTKAALLQMTRNLAVEWAEDGIRVNAVAPWYIRTPLTSGP---L---S-DPDYYEQVIERT---------PMRR 219 (257)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhCeEEEEEEECCCCCcccccc---c---C-ChHHHHHHHhcC---------CCCC
Confidence 01679999999999888765 689999999999988754311 1 0 011111111111 1223
Q ss_pred cccHHHHHHHHHHHHHhh
Q psy17528 344 VVPGDRVINAMAALAWYF 361 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~~ 361 (366)
+...+|++.+++.++...
T Consensus 220 ~~~~~~va~~~~~l~~~~ 237 (257)
T PRK09242 220 VGEPEEVAAAVAFLCMPA 237 (257)
T ss_pred CcCHHHHHHHHHHHhCcc
Confidence 556799999999887543
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.5e-13 Score=126.05 Aligned_cols=199 Identities=16% Similarity=0.227 Sum_probs=134.3
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||.+++++|++.| ++|++++|+.... +.+.+ .+
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G---~~V~~~~r~~~~~---~~~~~--------~~------------------- 49 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAG---ARLLLVGRNAEKL---EALAA--------RL------------------- 49 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEECCHHHH---HHHHH--------HH-------------------
Confidence 357899999999999999999999998 7899999974311 11111 00
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh------CcCEEEEcCcccCh-------hhhHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS------QTTIIFHIAATVRF-------DEHIRT 192 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~------~~d~Vih~a~~~~~-------~~~~~~ 192 (366)
....++.++.+|+.+.+ .+..+++ .+|+|||+||.... ......
T Consensus 50 -----------------~~~~~~~~~~~D~~d~~------~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~ 106 (263)
T PRK09072 50 -----------------PYPGRHRWVVADLTSEA------GREAVLARAREMGGINVLINNAGVNHFALLEDQDPEAIER 106 (263)
T ss_pred -----------------hcCCceEEEEccCCCHH------HHHHHHHHHHhcCCCCEEEECCCCCCccccccCCHHHHHH
Confidence 01246888999999876 5554443 57999999997532 234567
Q ss_pred HHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCC
Q psy17528 193 AYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGK 269 (366)
Q Consensus 193 ~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (366)
.+++|+.++..+++.+.+. .+..++|++||....... ..
T Consensus 107 ~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~--------------------------------------~~ 148 (263)
T PRK09072 107 LLALNLTAPMQLTRALLPLLRAQPSAMVVNVGSTFGSIGY--------------------------------------PG 148 (263)
T ss_pred HHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecChhhCcCC--------------------------------------CC
Confidence 8889999999888876541 234679999887543211 01
Q ss_pred CchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCc
Q psy17528 270 PNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDV 344 (366)
Q Consensus 270 ~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~ 344 (366)
...|+.+|...+.+++... +++.++++.||.+.++..... ... .. ......+
T Consensus 149 ~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~~~t~~~~~~------------------~~~---~~--~~~~~~~ 205 (263)
T PRK09072 149 YASYCASKFALRGFSEALRRELADTGVRVLYLAPRATRTAMNSEA------------------VQA---LN--RALGNAM 205 (263)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccccchhhh------------------ccc---cc--ccccCCC
Confidence 1679999998877776555 678999999998865432100 000 00 0001235
Q ss_pred ccHHHHHHHHHHHHHhh
Q psy17528 345 VPGDRVINAMAALAWYF 361 (366)
Q Consensus 345 v~vdDva~ai~~~~~~~ 361 (366)
..++|+|++++.+++..
T Consensus 206 ~~~~~va~~i~~~~~~~ 222 (263)
T PRK09072 206 DDPEDVAAAVLQAIEKE 222 (263)
T ss_pred CCHHHHHHHHHHHHhCC
Confidence 67788888888887754
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.5e-13 Score=124.84 Aligned_cols=198 Identities=17% Similarity=0.125 Sum_probs=131.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||.+++++|++.| .+|++++|+... .+.+.+ .+...
T Consensus 4 l~~k~vlItG~sggiG~~la~~l~~~g---~~V~~~~r~~~~---~~~~~~--------~l~~~---------------- 53 (239)
T PRK08703 4 LSDKTILVTGASQGLGEQVAKAYAAAG---ATVILVARHQKK---LEKVYD--------AIVEA---------------- 53 (239)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcC---CEEEEEeCChHH---HHHHHH--------HHHHc----------------
Confidence 668999999999999999999999998 789999998532 111111 11110
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH--------hCcCEEEEcCcccCh--------hhh
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI--------SQTTIIFHIAATVRF--------DEH 189 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~--------~~~d~Vih~a~~~~~--------~~~ 189 (366)
....+.++.+|+.+.+ ...+.+++ ..+|+|||+||.... ..+
T Consensus 54 ------------------~~~~~~~~~~D~~~~~----~~~~~~~~~~i~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~ 111 (239)
T PRK08703 54 ------------------GHPEPFAIRFDLMSAE----EKEFEQFAATIAEATQGKLDGIVHCAGYFYALSPLDFQTVAE 111 (239)
T ss_pred ------------------CCCCcceEEeeecccc----hHHHHHHHHHHHHHhCCCCCEEEEeccccccCCCccccCHHH
Confidence 1124557788887532 01222222 357999999996321 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 190 IRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 190 ~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
+...+++|+.++..+++.+.+. .+..+++++||....... +
T Consensus 112 ~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~----------~-------------------------- 155 (239)
T PRK08703 112 WVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVGESHGETPK----------A-------------------------- 155 (239)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhCCCCEEEEEeccccccCC----------C--------------------------
Confidence 5667899999988887766432 234689999986543110 0
Q ss_pred CCCCchHHHHHHHHHHHHHHhc-----C-CCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCc
Q psy17528 267 GGKPNSYTLTKATAEDLVRQVG-----H-ELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNI 340 (366)
Q Consensus 267 ~~~~~~Y~~sK~~~E~~l~~~~-----~-gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~ 340 (366)
....|+.+|+..+.+++.+. . ++++++++||.|+++..... . .+..
T Consensus 156 --~~~~Y~~sKaa~~~~~~~la~e~~~~~~i~v~~v~pG~v~t~~~~~~---~-----------------------~~~~ 207 (239)
T PRK08703 156 --YWGGFGASKAALNYLCKVAADEWERFGNLRANVLVPGPINSPQRIKS---H-----------------------PGEA 207 (239)
T ss_pred --CccchHHhHHHHHHHHHHHHHHhccCCCeEEEEEecCcccCcccccc---C-----------------------CCCC
Confidence 01579999999999987765 2 68999999999998753210 0 0011
Q ss_pred ccCcccHHHHHHHHHHHHH
Q psy17528 341 SMDVVPGDRVINAMAALAW 359 (366)
Q Consensus 341 ~~~~v~vdDva~ai~~~~~ 359 (366)
...+...+|++.+++.++.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~ 226 (239)
T PRK08703 208 KSERKSYGDVLPAFVWWAS 226 (239)
T ss_pred ccccCCHHHHHHHHHHHhC
Confidence 1235688899999988876
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-13 Score=129.17 Aligned_cols=208 Identities=13% Similarity=0.090 Sum_probs=137.8
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||.+++++|++.| ++|++++|+.+. .+.+.+.+.
T Consensus 7 ~~~k~ilItGasggIG~~la~~l~~~G---~~V~~~~r~~~~---~~~~~~~~~-------------------------- 54 (264)
T PRK07576 7 FAGKNVVVVGGTSGINLGIAQAFARAG---ANVAVASRSQEK---VDAAVAQLQ-------------------------- 54 (264)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHHHH--------------------------
Confidence 568999999999999999999999998 889999997431 111111110
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
....++.++.+|+++.+ .+..+++ .+|+|||+||... ....+.
T Consensus 55 -----------------~~~~~~~~~~~Dv~~~~------~i~~~~~~~~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~ 111 (264)
T PRK07576 55 -----------------QAGPEGLGVSADVRDYA------AVEAAFAQIADEFGPIDVLVSGAAGNFPAPAAGMSANGFK 111 (264)
T ss_pred -----------------HhCCceEEEECCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHH
Confidence 01235678899999876 5655543 4799999998532 123456
Q ss_pred HHHHHHHHHHHHHHHHHHhc--CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCC
Q psy17528 192 TAYNINVKGTQTILALAKRM--KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGK 269 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~--~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (366)
..+++|+.++..+++.+.+. ....+++++||..+.... +.
T Consensus 112 ~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~~~~~--------------------------------------~~ 153 (264)
T PRK07576 112 TVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQAFVPM--------------------------------------PM 153 (264)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhhccCC--------------------------------------CC
Confidence 78889999999988876542 122589999997543211 01
Q ss_pred CchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCc
Q psy17528 270 PNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDV 344 (366)
Q Consensus 270 ~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~ 344 (366)
...|+.+|...|.+++... ++++++.++|+.+.++.... .+.. . .......... .....+
T Consensus 154 ~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~pg~~~~t~~~~--~~~~--~--~~~~~~~~~~---------~~~~~~ 218 (264)
T PRK07576 154 QAHVCAAKAGVDMLTRTLALEWGPEGIRVNSIVPGPIAGTEGMA--RLAP--S--PELQAAVAQS---------VPLKRN 218 (264)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccccCcHHHh--hccc--C--HHHHHHHHhc---------CCCCCC
Confidence 1679999999999988764 67999999999987542110 0100 0 0000011110 112346
Q ss_pred ccHHHHHHHHHHHHHhh
Q psy17528 345 VPGDRVINAMAALAWYF 361 (366)
Q Consensus 345 v~vdDva~ai~~~~~~~ 361 (366)
....|+|++++.++..+
T Consensus 219 ~~~~dva~~~~~l~~~~ 235 (264)
T PRK07576 219 GTKQDIANAALFLASDM 235 (264)
T ss_pred CCHHHHHHHHHHHcChh
Confidence 77899999999988653
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=7e-13 Score=125.82 Aligned_cols=169 Identities=16% Similarity=0.177 Sum_probs=124.6
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++++++||||++.||..++++|.++| ++|+++.|+.+ ++.++ .+.++..
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g---~~liLvaR~~~------kL~~l-----a~~l~~~--------------- 53 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRG---YNLILVARRED------KLEAL-----AKELEDK--------------- 53 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCcHH------HHHHH-----HHHHHHh---------------
Confidence 4568999999999999999999999999 99999999854 23222 2222221
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHI 190 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~ 190 (366)
..-.+.++.+|+++++ ++..+.. .+|++|||||...+ ....
T Consensus 54 -------------------~~v~v~vi~~DLs~~~------~~~~l~~~l~~~~~~IdvLVNNAG~g~~g~f~~~~~~~~ 108 (265)
T COG0300 54 -------------------TGVEVEVIPADLSDPE------ALERLEDELKERGGPIDVLVNNAGFGTFGPFLELSLDEE 108 (265)
T ss_pred -------------------hCceEEEEECcCCChh------HHHHHHHHHHhcCCcccEEEECCCcCCccchhhCChHHH
Confidence 2357889999999987 5555443 58999999998532 2344
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 191 RTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
++.+++|+.+...+-.+.... .+-.++|.++|..++.+.
T Consensus 109 ~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~ag~~p~-------------------------------------- 150 (265)
T COG0300 109 EEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSAAGLIPT-------------------------------------- 150 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechhhcCCC--------------------------------------
Confidence 678999999988776654331 245689999998776322
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCC
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTL 305 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~ 305 (366)
+....|+.||+..-.+-.... .|+.++.+.||.+....
T Consensus 151 p~~avY~ATKa~v~~fSeaL~~EL~~~gV~V~~v~PG~~~T~f 193 (265)
T COG0300 151 PYMAVYSATKAFVLSFSEALREELKGTGVKVTAVCPGPTRTEF 193 (265)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEecCcccccc
Confidence 223789999997766655544 78999999999987653
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.3e-13 Score=127.18 Aligned_cols=165 Identities=15% Similarity=0.190 Sum_probs=117.9
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+++++||||+|+||.++++.|++.| .+|++++|+... .+++...+.
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G---~~v~~~~r~~~~---~~~~~~~~~---------------------------- 47 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDG---FKVAIVDYNEET---AQAAADKLS---------------------------- 47 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHHHH----------------------------
Confidence 5799999999999999999999998 789999987432 112211111
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIRTA 193 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~~~ 193 (366)
....++.++.+|+++++ .+.+++. ++|+||||||.... ...++..
T Consensus 48 ---------------~~~~~~~~~~~Dl~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~ 106 (256)
T PRK08643 48 ---------------KDGGKAIAVKADVSDRD------QVFAAVRQVVDTFGDLNVVVNNAGVAPTTPIETITEEQFDKV 106 (256)
T ss_pred ---------------hcCCeEEEEECCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHH
Confidence 01246778999999986 5555443 58999999986421 2345678
Q ss_pred HHHHHHHHHHHHHHHHh----cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCC
Q psy17528 194 YNINVKGTQTILALAKR----MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGK 269 (366)
Q Consensus 194 ~~~nv~~~~~ll~~a~~----~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (366)
+++|+.++..+++.+.+ .+...++|++||....... | .
T Consensus 107 ~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~----------~----------------------------~ 148 (256)
T PRK08643 107 YNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGVVGN----------P----------------------------E 148 (256)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECccccccCC----------C----------------------------C
Confidence 89999998776665543 2223589999997543111 0 0
Q ss_pred CchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCC
Q psy17528 270 PNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTL 305 (366)
Q Consensus 270 ~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~ 305 (366)
...|+.+|...+.+++... .|+.++.++||.+.++.
T Consensus 149 ~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~ 189 (256)
T PRK08643 149 LAVYSSTKFAVRGLTQTAARDLASEGITVNAYAPGIVKTPM 189 (256)
T ss_pred CchhHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcChh
Confidence 1679999999888776655 68999999999998764
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.5e-13 Score=128.47 Aligned_cols=166 Identities=14% Similarity=0.160 Sum_probs=119.7
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|.||.+++++|++.| ++|++++|+... .+.+.+.+. .
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G---~~V~~~~r~~~~---~~~~~~~~~--------~----------------- 54 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAG---ADVILLSRNEEN---LKKAREKIK--------S----------------- 54 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHHHH--------h-----------------
Confidence 568999999999999999999999999 789999997432 111111110 0
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh------CcCEEEEcCcccC-------hhhhHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS------QTTIIFHIAATVR-------FDEHIRT 192 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~------~~d~Vih~a~~~~-------~~~~~~~ 192 (366)
....++.++.+|+++.+ ++..+++ .+|++|||||... ....++.
T Consensus 55 -----------------~~~~~~~~~~~Dv~~~~------~i~~~~~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~ 111 (263)
T PRK08339 55 -----------------ESNVDVSYIVADLTKRE------DLERTVKELKNIGEPDIFFFSTGGPKPGYFMEMSMEDWEG 111 (263)
T ss_pred -----------------hcCCceEEEEecCCCHH------HHHHHHHHHHhhCCCcEEEECCCCCCCCCcccCCHHHHHH
Confidence 01246788999999986 5655554 5899999999642 1245677
Q ss_pred HHHHHHHHHHHHHHHHH----hcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 193 AYNINVKGTQTILALAK----RMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 193 ~~~~nv~~~~~ll~~a~----~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
.+++|+.+...+.+.+. +. +..++|++||....... |
T Consensus 112 ~~~~n~~~~~~~~~~~l~~m~~~-~~g~Ii~isS~~~~~~~----------~---------------------------- 152 (263)
T PRK08339 112 AVKLLLYPAVYLTRALVPAMERK-GFGRIIYSTSVAIKEPI----------P---------------------------- 152 (263)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEEcCccccCCC----------C----------------------------
Confidence 88999887666655443 32 45689999998654211 0
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPT 304 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~ 304 (366)
....|+.+|...+.+.+... +|++++.+.||.|..+
T Consensus 153 ~~~~y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~ 193 (263)
T PRK08339 153 NIALSNVVRISMAGLVRTLAKELGPKGITVNGIMPGIIRTD 193 (263)
T ss_pred cchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccH
Confidence 01569999999888887765 7899999999999765
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.1e-13 Score=125.74 Aligned_cols=203 Identities=16% Similarity=0.098 Sum_probs=133.3
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++++|+||||+|+||.+++++|++.| ++|++++|+.... +.+.+ .
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G---~~v~~~~r~~~~~---~~~~~------------~--------------- 50 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEG---ATVVVGDIDPEAG---KAAAD------------E--------------- 50 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcC---CEEEEEeCCHHHH---HHHHH------------H---------------
Confidence 3678999999999999999999999998 7899999864311 11100 0
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh---------hh
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF---------DE 188 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~---------~~ 188 (366)
. ...++.+|+.+.+ .+.++++ .+|+|||+||.... ..
T Consensus 51 ----------------~-----~~~~~~~D~~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~ 103 (255)
T PRK06057 51 ----------------V-----GGLFVPTDVTDED------AVNALFDTAAETYGSVDIAFNNAGISPPEDDSILNTGLD 103 (255)
T ss_pred ----------------c-----CCcEEEeeCCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCCCcccCCHH
Confidence 0 1146789999876 5655554 57999999996421 12
Q ss_pred hHHHHHHHHHHHHHHHHHHHH----hcCCCcEEEEeeCccee-cCccccccccCCCCCChHHHHHHhhhcchHHHHhhhh
Q psy17528 189 HIRTAYNINVKGTQTILALAK----RMKGLKSFVHVSTAYCN-CDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNE 263 (366)
Q Consensus 189 ~~~~~~~~nv~~~~~ll~~a~----~~~~~~~~v~iSS~~~~-~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 263 (366)
.++..+++|+.++..+++.+. +. +..++|++||.... +.. .+
T Consensus 104 ~~~~~~~~n~~~~~~l~~~~~~~l~~~-~~g~iv~~sS~~~~~g~~---------~~----------------------- 150 (255)
T PRK06057 104 AWQRVQDVNLTSVYLCCKAALPHMVRQ-GKGSIINTASFVAVMGSA---------TS----------------------- 150 (255)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHh-CCcEEEEEcchhhccCCC---------CC-----------------------
Confidence 356788899999877766553 22 44589999986432 110 00
Q ss_pred cccCCCCchHHHHHHHHHHHHHHh----c-CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCC
Q psy17528 264 HIIGGKPNSYTLTKATAEDLVRQV----G-HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDP 338 (366)
Q Consensus 264 ~~~~~~~~~Y~~sK~~~E~~l~~~----~-~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~ 338 (366)
...|+.+|+..+.+.+.. . .++++++++||.+.++..... +.. .... ..+... .+.
T Consensus 151 ------~~~Y~~sKaal~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~--~~~---~~~~-~~~~~~----~~~--- 211 (255)
T PRK06057 151 ------QISYTASKGGVLAMSRELGVQFARQGIRVNALCPGPVNTPLLQEL--FAK---DPER-AARRLV----HVP--- 211 (255)
T ss_pred ------CcchHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCCcCCchhhhh--ccC---CHHH-HHHHHh----cCC---
Confidence 157999998776666543 3 689999999999988754321 100 0011 111110 011
Q ss_pred CcccCcccHHHHHHHHHHHHHhh
Q psy17528 339 NISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 339 ~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
...+..++|+++++..++...
T Consensus 212 --~~~~~~~~~~a~~~~~l~~~~ 232 (255)
T PRK06057 212 --MGRFAEPEEIAAAVAFLASDD 232 (255)
T ss_pred --CCCCcCHHHHHHHHHHHhCcc
Confidence 125789999999998877543
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.5e-13 Score=129.75 Aligned_cols=208 Identities=13% Similarity=0.062 Sum_probs=140.3
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|.||.++++.|.+.| .+|++++|+... .+.+.+.
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~---l~~~~~~---------------------------- 52 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHARG---AKLALVDLEEAE---LAALAAE---------------------------- 52 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHH----------------------------
Confidence 568999999999999999999999998 789999997431 1111110
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~ 191 (366)
.. ....+..+.+|+++.+ ++.++++ .+|+||||||.... ...++
T Consensus 53 ---------------l~-~~~~~~~~~~Dv~d~~------~v~~~~~~~~~~~g~id~vI~nAG~~~~~~~~~~~~~~~~ 110 (296)
T PRK05872 53 ---------------LG-GDDRVLTVVADVTDLA------AMQAAAEEAVERFGGIDVVVANAGIASGGSVAQVDPDAFR 110 (296)
T ss_pred ---------------hc-CCCcEEEEEecCCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCcCcccCCHHHHH
Confidence 10 0234566779999876 5555443 57999999997431 24557
Q ss_pred HHHHHHHHHHHHHHHHHHhc--CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCC
Q psy17528 192 TAYNINVKGTQTILALAKRM--KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGK 269 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~--~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (366)
..+++|+.++..+++.+... ....+||++||..++.... .
T Consensus 111 ~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~--------------------------------------~ 152 (296)
T PRK05872 111 RVIDVNLLGVFHTVRATLPALIERRGYVLQVSSLAAFAAAP--------------------------------------G 152 (296)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHhhcCCCC--------------------------------------C
Confidence 78899999999988876532 1235899999986653211 1
Q ss_pred CchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCc
Q psy17528 270 PNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDV 344 (366)
Q Consensus 270 ~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~ 344 (366)
...|+.+|...+.+.+... +++.++++.||.+..+....... . ........... +.....+
T Consensus 153 ~~~Y~asKaal~~~~~~l~~e~~~~gi~v~~v~Pg~v~T~~~~~~~~---~----~~~~~~~~~~~-------~~p~~~~ 218 (296)
T PRK05872 153 MAAYCASKAGVEAFANALRLEVAHHGVTVGSAYLSWIDTDLVRDADA---D----LPAFRELRARL-------PWPLRRT 218 (296)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHCcEEEEEecCcccchhhhhccc---c----chhHHHHHhhC-------CCcccCC
Confidence 1679999999999987654 68999999999997764321100 0 00111111110 0112346
Q ss_pred ccHHHHHHHHHHHHHhh
Q psy17528 345 VPGDRVINAMAALAWYF 361 (366)
Q Consensus 345 v~vdDva~ai~~~~~~~ 361 (366)
+..+|++++++.++...
T Consensus 219 ~~~~~va~~i~~~~~~~ 235 (296)
T PRK05872 219 TSVEKCAAAFVDGIERR 235 (296)
T ss_pred CCHHHHHHHHHHHHhcC
Confidence 78999999999988754
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.5e-13 Score=121.67 Aligned_cols=200 Identities=16% Similarity=0.201 Sum_probs=133.7
Q ss_pred EEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccccc
Q psy17528 51 IFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNYFN 130 (366)
Q Consensus 51 ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (366)
|+|||++|+||++++++|++.| ++|++++|+... ..+.+.+. +..
T Consensus 1 vlItG~~g~iG~~la~~l~~~G---~~v~~~~r~~~~--~~~~~~~~--------~~~---------------------- 45 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEG---AKVIITYRSSEE--GAEEVVEE--------LKA---------------------- 45 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCchh--HHHHHHHH--------HHh----------------------
Confidence 5899999999999999999998 789999887521 11111111 111
Q ss_pred hhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHHHHHHH
Q psy17528 131 DAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIRTAYNI 196 (366)
Q Consensus 131 ~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~~~~~~ 196 (366)
...++.++.+|+++.. .+..++. .+|.|||++|.... ...+...++.
T Consensus 46 -------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~ 106 (239)
T TIGR01830 46 -------------YGVKALGVVCDVSDRE------DVKAVVEEIEEELGPIDILVNNAGITRDNLLMRMKEEDWDAVIDT 106 (239)
T ss_pred -------------cCCceEEEEecCCCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 1245788999999876 5555543 47999999997531 2345678889
Q ss_pred HHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchH
Q psy17528 197 NVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSY 273 (366)
Q Consensus 197 nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 273 (366)
|+.++..+++.+... .+.++|+++||...+.... ....|
T Consensus 107 n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~g~~--------------------------------------~~~~y 148 (239)
T TIGR01830 107 NLTGVFNLTQAVLRIMIKQRSGRIINISSVVGLMGNA--------------------------------------GQANY 148 (239)
T ss_pred hhHHHHHHHHHHHHHHHhcCCeEEEEECCccccCCCC--------------------------------------CCchh
Confidence 999999998877542 2456899999975432110 01679
Q ss_pred HHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHH
Q psy17528 274 TLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGD 348 (366)
Q Consensus 274 ~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vd 348 (366)
+.+|...+.+++... .++.++++||+.+.++...+. . ..+........ ...-+.+++
T Consensus 149 ~~~k~a~~~~~~~l~~~~~~~g~~~~~i~pg~~~~~~~~~~-------~--~~~~~~~~~~~---------~~~~~~~~~ 210 (239)
T TIGR01830 149 AASKAGVIGFTKSLAKELASRNITVNAVAPGFIDTDMTDKL-------S--EKVKKKILSQI---------PLGRFGTPE 210 (239)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCCCChhhhhc-------C--hHHHHHHHhcC---------CcCCCcCHH
Confidence 999998888776654 589999999998866532211 0 11111111111 112366899
Q ss_pred HHHHHHHHHHHh
Q psy17528 349 RVINAMAALAWY 360 (366)
Q Consensus 349 Dva~ai~~~~~~ 360 (366)
|++++++.++..
T Consensus 211 ~~a~~~~~~~~~ 222 (239)
T TIGR01830 211 EVANAVAFLASD 222 (239)
T ss_pred HHHHHHHHHhCc
Confidence 999999988844
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.4e-13 Score=124.22 Aligned_cols=203 Identities=18% Similarity=0.184 Sum_probs=134.1
Q ss_pred cccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccc
Q psy17528 43 QEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGIT 122 (366)
Q Consensus 43 ~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (366)
...+++++|+||||+|+||.+++++|++.| .+|++++|+... .+++.+. +...
T Consensus 7 ~~~~~~k~vlItG~~g~iG~~la~~l~~~G---~~Vi~~~r~~~~---~~~~~~~--------l~~~------------- 59 (247)
T PRK08945 7 PDLLKDRIILVTGAGDGIGREAALTYARHG---ATVILLGRTEEK---LEAVYDE--------IEAA------------- 59 (247)
T ss_pred ccccCCCEEEEeCCCchHHHHHHHHHHHCC---CcEEEEeCCHHH---HHHHHHH--------HHhc-------------
Confidence 456789999999999999999999999998 799999997432 1222221 1110
Q ss_pred cccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH-------hCcCEEEEcCcccCh--------h
Q psy17528 123 HRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI-------SQTTIIFHIAATVRF--------D 187 (366)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~-------~~~d~Vih~a~~~~~--------~ 187 (366)
...++.++.+|+.+.+ ..++..+. ..+|+|||+|+.... .
T Consensus 60 ---------------------~~~~~~~~~~d~~~~~----~~~~~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~ 114 (247)
T PRK08945 60 ---------------------GGPQPAIIPLDLLTAT----PQNYQQLADTIEEQFGRLDGVLHNAGLLGELGPMEQQDP 114 (247)
T ss_pred ---------------------CCCCceEEEecccCCC----HHHHHHHHHHHHHHhCCCCEEEECCcccCCCCCcccCCH
Confidence 1235667788886432 11232222 368999999986421 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh---cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhc
Q psy17528 188 EHIRTAYNINVKGTQTILALAKR---MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEH 264 (366)
Q Consensus 188 ~~~~~~~~~nv~~~~~ll~~a~~---~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 264 (366)
..++..+++|+.++..+++.+.. ..+..+||++||.......
T Consensus 115 ~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss~~~~~~~----------------------------------- 159 (247)
T PRK08945 115 EVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSSSVGRQGR----------------------------------- 159 (247)
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEccHhhcCCC-----------------------------------
Confidence 34577889999998888776642 1256789999997543211
Q ss_pred ccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCC
Q psy17528 265 IIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPN 339 (366)
Q Consensus 265 ~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~ 339 (366)
.....|+.+|...+.+++... .++++++++|+.+-++.... . .... +
T Consensus 160 ---~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~~~~v~pg~v~t~~~~~---~--------------~~~~------~-- 211 (247)
T PRK08945 160 ---ANWGAYAVSKFATEGMMQVLADEYQGTNLRVNCINPGGTRTAMRAS---A--------------FPGE------D-- 211 (247)
T ss_pred ---CCCcccHHHHHHHHHHHHHHHHHhcccCEEEEEEecCCccCcchhh---h--------------cCcc------c--
Confidence 011579999999999887655 57889999999886652210 0 0000 0
Q ss_pred cccCcccHHHHHHHHHHHHHhh
Q psy17528 340 ISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 340 ~~~~~v~vdDva~ai~~~~~~~ 361 (366)
...+...+|++++++.++...
T Consensus 212 -~~~~~~~~~~~~~~~~~~~~~ 232 (247)
T PRK08945 212 -PQKLKTPEDIMPLYLYLMGDD 232 (247)
T ss_pred -ccCCCCHHHHHHHHHHHhCcc
Confidence 113567799999999877543
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.6e-13 Score=124.95 Aligned_cols=211 Identities=12% Similarity=0.054 Sum_probs=134.9
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
..+++++++||||+|+||.+++++|++.| .+|+++.|+... ..+.+.+.+.
T Consensus 4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G---~~v~~~~~~~~~--~~~~~~~~~~------------------------ 54 (260)
T PRK08416 4 NEMKGKTLVISGGTRGIGKAIVYEFAQSG---VNIAFTYNSNVE--EANKIAEDLE------------------------ 54 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEcCCCHH--HHHHHHHHHH------------------------
Confidence 44678999999999999999999999998 788777664321 1111111110
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC---------h-
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR---------F- 186 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~---------~- 186 (366)
.....++.++.+|+++.+ ++..+++ .+|++|||||... +
T Consensus 55 ------------------~~~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~ 110 (260)
T PRK08416 55 ------------------QKYGIKAKAYPLNILEPE------TYKELFKKIDEDFDRVDFFISNAIISGRAVVGGYTKFM 110 (260)
T ss_pred ------------------HhcCCceEEEEcCCCCHH------HHHHHHHHHHHhcCCccEEEECccccccccccccCChh
Confidence 011246789999999876 5555443 5799999998531 1
Q ss_pred ---hhhHHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHh
Q psy17528 187 ---DEHIRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIAL 260 (366)
Q Consensus 187 ---~~~~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~ 260 (366)
.......+++|+.+...+.+.+.+. .+..+||++||....... |
T Consensus 111 ~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------~-------------------- 160 (260)
T PRK08416 111 RLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVGGGSIISLSSTGNLVYI----------E-------------------- 160 (260)
T ss_pred hCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccCCEEEEEEeccccccCC----------C--------------------
Confidence 1344567788888766655544321 134689999997543111 0
Q ss_pred hhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeec
Q psy17528 261 LNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQ 335 (366)
Q Consensus 261 ~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~ 335 (366)
....|+.+|...+.+++.+. +|++++.+.||.+-.+..... ..............
T Consensus 161 --------~~~~Y~asK~a~~~~~~~la~el~~~gi~v~~v~PG~i~T~~~~~~-------~~~~~~~~~~~~~~----- 220 (260)
T PRK08416 161 --------NYAGHGTSKAAVETMVKYAATELGEKNIRVNAVSGGPIDTDALKAF-------TNYEEVKAKTEELS----- 220 (260)
T ss_pred --------CcccchhhHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccChhhhhc-------cCCHHHHHHHHhcC-----
Confidence 01579999999999998766 589999999998865532111 10011111111110
Q ss_pred CCCCcccCcccHHHHHHHHHHHHHhh
Q psy17528 336 TDPNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 336 ~~~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
...-+...+|++++++.++...
T Consensus 221 ----~~~r~~~p~~va~~~~~l~~~~ 242 (260)
T PRK08416 221 ----PLNRMGQPEDLAGACLFLCSEK 242 (260)
T ss_pred ----CCCCCCCHHHHHHHHHHHcChh
Confidence 1123678999999999987643
|
|
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-12 Score=122.19 Aligned_cols=170 Identities=13% Similarity=0.174 Sum_probs=120.4
Q ss_pred CCCCeEEEeCCcc--hHHHHHHHHHHHhCCCccEEEEEEcCCCCcC------HHHH--HHHHhhhhhhhhhhhcCCCCCC
Q psy17528 46 YKDQTIFITGATG--FLGSLLVEKLLRCCPQIRKIILLIRTRGSTS------ITQR--VYNYFNDAVFDRMRLECPNYAD 115 (366)
Q Consensus 46 ~~~~~ilItGatG--~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~------~~~~--i~~~~~~~~~~~~~~~~~~~~~ 115 (366)
+++++||||||+| .||.+++++|++.| ++|+++.|+..+.. ..+. +.+ .
T Consensus 3 l~~k~vlItGas~~~giG~~la~~l~~~G---~~vi~~~r~~~~~~~~~~~~~~~~~~~~~--------~---------- 61 (256)
T PRK12748 3 LMKKIALVTGASRLNGIGAAVCRRLAAKG---IDIFFTYWSPYDKTMPWGMHDKEPVLLKE--------E---------- 61 (256)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHcC---CcEEEEcCCccccccccccchhhHHHHHH--------H----------
Confidence 4578999999996 69999999999998 78999998732110 0000 111 0
Q ss_pred ccccccccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh--
Q psy17528 116 KVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-- 186 (366)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-- 186 (366)
......++.++.+|+.+.+ ++..+++ .+|+|||+||....
T Consensus 62 -------------------------~~~~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~g~id~vi~~ag~~~~~~ 110 (256)
T PRK12748 62 -------------------------IESYGVRCEHMEIDLSQPY------APNRVFYAVSERLGDPSILINNAAYSTHTR 110 (256)
T ss_pred -------------------------HHhcCCeEEEEECCCCCHH------HHHHHHHHHHHhCCCCCEEEECCCcCCCCC
Confidence 1112346888999999876 5554443 47999999986421
Q ss_pred -----hhhHHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHH
Q psy17528 187 -----DEHIRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEI 258 (366)
Q Consensus 187 -----~~~~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~ 258 (366)
...++..+++|+.++..+++.+.+. ...+++|++||...+.+..
T Consensus 111 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~~---------------------------- 162 (256)
T PRK12748 111 LEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINLTSGQSLGPMP---------------------------- 162 (256)
T ss_pred hhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeEEEEECCccccCCCC----------------------------
Confidence 2345678899999999999876532 1346899999976543210
Q ss_pred HhhhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCC
Q psy17528 259 ALLNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTL 305 (366)
Q Consensus 259 ~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~ 305 (366)
....|+.+|...+.+++... .+++++.++||.+..+.
T Consensus 163 ----------~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~~~t~~ 204 (256)
T PRK12748 163 ----------DELAYAATKGAIEAFTKSLAPELAEKGITVNAVNPGPTDTGW 204 (256)
T ss_pred ----------CchHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEeCcccCCC
Confidence 01679999999999987754 58999999999877653
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.8e-13 Score=127.45 Aligned_cols=155 Identities=17% Similarity=0.211 Sum_probs=118.4
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||.+++++|++.| .+|++++|+....
T Consensus 7 l~~k~vlItG~s~gIG~~la~~l~~~G---~~v~~~~~~~~~~------------------------------------- 46 (266)
T PRK06171 7 LQGKIIIVTGGSSGIGLAIVKELLANG---ANVVNADIHGGDG------------------------------------- 46 (266)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEeCCcccc-------------------------------------
Confidence 568999999999999999999999998 7888888875321
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------------
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR------------- 185 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~------------- 185 (366)
...++.++.+|+.+.+ .+..+++ .+|+|||+||...
T Consensus 47 ------------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~ 102 (266)
T PRK06171 47 ------------------QHENYQFVPTDVSSAE------EVNHTVAEIIEKFGRIDGLVNNAGINIPRLLVDEKDPAGK 102 (266)
T ss_pred ------------------ccCceEEEEccCCCHH------HHHHHHHHHHHHcCCCCEEEECCcccCCcccccccccccc
Confidence 0135778899999976 5555543 5799999999632
Q ss_pred ---hhhhHHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHH
Q psy17528 186 ---FDEHIRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIA 259 (366)
Q Consensus 186 ---~~~~~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~ 259 (366)
....++..+++|+.++..+++++.+. .+..++|++||...+....
T Consensus 103 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~----------------------------- 153 (266)
T PRK06171 103 YELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEAGLEGSE----------------------------- 153 (266)
T ss_pred ccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcEEEEEccccccCCCC-----------------------------
Confidence 12345678899999999988877542 2345799999986542210
Q ss_pred hhhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccc
Q psy17528 260 LLNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVF 302 (366)
Q Consensus 260 ~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~ 302 (366)
....|+.+|...+.+++.+. +++++++++||.+.
T Consensus 154 ---------~~~~Y~~sK~a~~~l~~~la~e~~~~gi~v~~v~pG~~~ 192 (266)
T PRK06171 154 ---------GQSCYAATKAALNSFTRSWAKELGKHNIRVVGVAPGILE 192 (266)
T ss_pred ---------CCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeccccc
Confidence 11679999999999887765 68999999999885
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=99.54 E-value=3e-13 Score=125.96 Aligned_cols=212 Identities=13% Similarity=0.070 Sum_probs=136.1
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
++++||||+|+||.+++++|++.| .+|+++.|+... .+.+.+. +..
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G---~~v~~~~r~~~~---~~~~~~~--------l~~-------------------- 46 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDG---FAVAVADLNEET---AKETAKE--------INQ-------------------- 46 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHH--------HHh--------------------
Confidence 589999999999999999999998 789999887421 1111111 111
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIRTAY 194 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~~~~ 194 (366)
...++.++.+|+.+++ .+..++. .+|+|||++|.... ...++..+
T Consensus 47 ---------------~~~~~~~~~~Dl~~~~------~i~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~ 105 (254)
T TIGR02415 47 ---------------AGGKAVAYKLDVSDKD------QVFSAIDQAAEKFGGFDVMVNNAGVAPITPILEITEEELKKVY 105 (254)
T ss_pred ---------------cCCeEEEEEcCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHH
Confidence 1246788999999976 5555443 57999999997421 24456788
Q ss_pred HHHHHHHHHHHHHHH----hcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCC
Q psy17528 195 NINVKGTQTILALAK----RMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKP 270 (366)
Q Consensus 195 ~~nv~~~~~ll~~a~----~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (366)
++|+.++..+++.+. +.+...++|++||........ ..
T Consensus 106 ~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~--------------------------------------~~ 147 (254)
T TIGR02415 106 NVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAGHEGNP--------------------------------------IL 147 (254)
T ss_pred hhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhhcCCCC--------------------------------------CC
Confidence 999998887766543 222236899999975432110 11
Q ss_pred chHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccc--hHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 271 NSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFN--GVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 271 ~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
..|+.+|...+.+++... .++.+++++|+.+.++............. .......... .......
T Consensus 148 ~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 218 (254)
T TIGR02415 148 SAYSSTKFAVRGLTQTAAQELAPKGITVNAYCPGIVKTPMWEEIDEETSEIAGKPIGEGFEEFS---------SEIALGR 218 (254)
T ss_pred cchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccChhhhhhhhhhhhcccCchHHHHHHHH---------hhCCCCC
Confidence 679999999999887654 57999999999987653211100000000 0000000000 0011234
Q ss_pred cccHHHHHHHHHHHHHhhh
Q psy17528 344 VVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~~~ 362 (366)
++..+|+++++..++....
T Consensus 219 ~~~~~~~a~~~~~l~~~~~ 237 (254)
T TIGR02415 219 PSEPEDVAGLVSFLASEDS 237 (254)
T ss_pred CCCHHHHHHHHHhhccccc
Confidence 7888999999999887654
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.7e-13 Score=125.83 Aligned_cols=212 Identities=16% Similarity=0.156 Sum_probs=140.1
Q ss_pred cccCCCCeEEEeCCcc-hHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccc
Q psy17528 43 QEFYKDQTIFITGATG-FLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGI 121 (366)
Q Consensus 43 ~~~~~~~~ilItGatG-~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (366)
...+++++++||||+| .||.++++.|++.| .+|++.+|+.... +...+ .++..
T Consensus 12 ~~~~~~k~vlItG~sg~gIG~~ia~~l~~~G---~~V~~~~~~~~~~---~~~~~--------~~~~~------------ 65 (262)
T PRK07831 12 HGLLAGKVVLVTAAAGTGIGSATARRALEEG---ARVVISDIHERRL---GETAD--------ELAAE------------ 65 (262)
T ss_pred ccccCCCEEEEECCCcccHHHHHHHHHHHcC---CEEEEEeCCHHHH---HHHHH--------HHHHh------------
Confidence 3556789999999998 69999999999998 7788888864321 11111 11110
Q ss_pred ccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hh
Q psy17528 122 THRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FD 187 (366)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~ 187 (366)
. ...++.++.+|+.+.+ .+..+++ .+|++|||||... ..
T Consensus 66 -------------------~--~~~~~~~~~~Dl~~~~------~~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~ 118 (262)
T PRK07831 66 -------------------L--GLGRVEAVVCDVTSEA------QVDALIDAAVERLGRLDVLVNNAGLGGQTPVVDMTD 118 (262)
T ss_pred -------------------c--CCceEEEEEccCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCH
Confidence 0 0136788999999876 5555443 5799999999642 12
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhc---CC-CcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhh
Q psy17528 188 EHIRTAYNINVKGTQTILALAKRM---KG-LKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNE 263 (366)
Q Consensus 188 ~~~~~~~~~nv~~~~~ll~~a~~~---~~-~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 263 (366)
..+...+++|+.+...+++.+.+. .. ..+++++||.......
T Consensus 119 ~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~~~~~~---------------------------------- 164 (262)
T PRK07831 119 DEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVLGWRAQ---------------------------------- 164 (262)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCCC----------------------------------
Confidence 356677889999988887765431 12 4578888886543211
Q ss_pred cccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCC
Q psy17528 264 HIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDP 338 (366)
Q Consensus 264 ~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~ 338 (366)
.....|+.+|...+.+++.+. +++++++++|+.+..+..... . . ...........
T Consensus 165 ----~~~~~Y~~sKaal~~~~~~la~e~~~~gI~v~~i~Pg~~~t~~~~~~---~---~--~~~~~~~~~~~-------- 224 (262)
T PRK07831 165 ----HGQAHYAAAKAGVMALTRCSALEAAEYGVRINAVAPSIAMHPFLAKV---T---S--AELLDELAARE-------- 224 (262)
T ss_pred ----CCCcchHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccCcccccc---c---C--HHHHHHHHhcC--------
Confidence 011679999999999988765 689999999999988743210 0 0 11111111111
Q ss_pred CcccCcccHHHHHHHHHHHHHhhh
Q psy17528 339 NISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 339 ~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
...-+...+|++++++.++...+
T Consensus 225 -~~~r~~~p~~va~~~~~l~s~~~ 247 (262)
T PRK07831 225 -AFGRAAEPWEVANVIAFLASDYS 247 (262)
T ss_pred -CCCCCcCHHHHHHHHHHHcCchh
Confidence 12336678999999999886543
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.3e-13 Score=123.68 Aligned_cols=202 Identities=11% Similarity=0.123 Sum_probs=131.9
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
|++|||||+|+||.+++++|++.| .+|+++.|... ...+.+.+..
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G---~~v~~~~r~~~--~~~~~~~~~~------------------------------ 45 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDG---YRVAANCGPNE--ERAEAWLQEQ------------------------------ 45 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCCH--HHHHHHHHHH------------------------------
Confidence 589999999999999999999998 78888888321 1111111100
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIRTAY 194 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~~~~ 194 (366)
.....++.++.+|+.++. .+.++++ .+|+|||++|... ....+...+
T Consensus 46 -------------~~~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~ 106 (242)
T TIGR01829 46 -------------GALGFDFRVVEGDVSSFE------SCKAAVAKVEAELGPIDVLVNNAGITRDATFKKMTYEQWSAVI 106 (242)
T ss_pred -------------HhhCCceEEEEecCCCHH------HHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHH
Confidence 001246889999999876 5554443 5899999998642 123456678
Q ss_pred HHHHHHHHHHHHHH----HhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCC
Q psy17528 195 NINVKGTQTILALA----KRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKP 270 (366)
Q Consensus 195 ~~nv~~~~~ll~~a----~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (366)
+.|+.++..+++.+ ++. +.+++|++||........ ..
T Consensus 107 ~~n~~~~~~~~~~~~~~~~~~-~~~~iv~iss~~~~~~~~--------------------------------------~~ 147 (242)
T TIGR01829 107 DTNLNSVFNVTQPVIDGMRER-GWGRIINISSVNGQKGQF--------------------------------------GQ 147 (242)
T ss_pred HHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcchhhcCCCC--------------------------------------Cc
Confidence 88999877765544 333 567899999975432110 01
Q ss_pred chHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcc
Q psy17528 271 NSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVV 345 (366)
Q Consensus 271 ~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v 345 (366)
..|+.+|...+.+++... +++.++.++|+.+.++...... ..+......+. ....+.
T Consensus 148 ~~y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~~~---------~~~~~~~~~~~---------~~~~~~ 209 (242)
T TIGR01829 148 TNYSAAKAGMIGFTKALAQEGATKGVTVNTISPGYIATDMVMAMR---------EDVLNSIVAQI---------PVGRLG 209 (242)
T ss_pred chhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCCCcCccccccc---------hHHHHHHHhcC---------CCCCCc
Confidence 579999998877776653 6899999999999887543211 11111111111 112345
Q ss_pred cHHHHHHHHHHHHHhh
Q psy17528 346 PGDRVINAMAALAWYF 361 (366)
Q Consensus 346 ~vdDva~ai~~~~~~~ 361 (366)
..+|+++++..++..+
T Consensus 210 ~~~~~a~~~~~l~~~~ 225 (242)
T TIGR01829 210 RPEEIAAAVAFLASEE 225 (242)
T ss_pred CHHHHHHHHHHHcCch
Confidence 6689999988877554
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.8e-13 Score=122.94 Aligned_cols=205 Identities=12% Similarity=0.082 Sum_probs=136.5
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+++++||||+|+||.++++.|++.| ++|++++|+... .+++.+.+. .
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G---~~Vi~~~r~~~~---~~~~~~~~~--------~------------------- 47 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEG---ANVVITGRTKEK---LEEAKLEIE--------Q------------------- 47 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHHHH--------h-------------------
Confidence 4799999999999999999999998 789999997432 112211110 0
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIRTA 193 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~~~ 193 (366)
...++.++.+|+++++ .+.+++. .+|+|||++|... ....++..
T Consensus 48 ----------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~id~lI~~ag~~~~~~~~~~~~~~~~~~ 105 (252)
T PRK07677 48 ----------------FPGQVLTVQMDVRNPE------DVQKMVEQIDEKFGRIDALINNAAGNFICPAEDLSVNGWNSV 105 (252)
T ss_pred ----------------cCCcEEEEEecCCCHH------HHHHHHHHHHHHhCCccEEEECCCCCCCCCcccCCHHHHHHH
Confidence 1246788999999876 5555443 5799999998532 12345778
Q ss_pred HHHHHHHHHHHHHHHHh----cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCC
Q psy17528 194 YNINVKGTQTILALAKR----MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGK 269 (366)
Q Consensus 194 ~~~nv~~~~~ll~~a~~----~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (366)
+++|+.++..+++++.+ .....+++++||.+..... ..
T Consensus 106 ~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~--------------------------------------~~ 147 (252)
T PRK07677 106 IDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAWDAG--------------------------------------PG 147 (252)
T ss_pred HhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhhccCC--------------------------------------CC
Confidence 99999999999887743 1123689999998654211 01
Q ss_pred CchHHHHHHHHHHHHHHhc------CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 270 PNSYTLTKATAEDLVRQVG------HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 270 ~~~Y~~sK~~~E~~l~~~~------~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
...|+.+|...+.+.+... +|++++.++||.+.++.... ..+. . ........+.. ...-
T Consensus 148 ~~~Y~~sKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~~~~~~~-~~~~---~--~~~~~~~~~~~---------~~~~ 212 (252)
T PRK07677 148 VIHSAAAKAGVLAMTRTLAVEWGRKYGIRVNAIAPGPIERTGGAD-KLWE---S--EEAAKRTIQSV---------PLGR 212 (252)
T ss_pred CcchHHHHHHHHHHHHHHHHHhCcccCeEEEEEeecccccccccc-cccC---C--HHHHHHHhccC---------CCCC
Confidence 1579999999998887643 48999999999998543210 0000 0 11122222211 1223
Q ss_pred cccHHHHHHHHHHHHHh
Q psy17528 344 VVPGDRVINAMAALAWY 360 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~ 360 (366)
+...+|+++++..++..
T Consensus 213 ~~~~~~va~~~~~l~~~ 229 (252)
T PRK07677 213 LGTPEEIAGLAYFLLSD 229 (252)
T ss_pred CCCHHHHHHHHHHHcCc
Confidence 67789999999887754
|
|
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-13 Score=127.72 Aligned_cols=159 Identities=21% Similarity=0.244 Sum_probs=115.3
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+++++||||+|+||.+++++|++.| .+|++++|+.... +.
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~G---~~v~~~~r~~~~~-----~~-------------------------------- 40 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQPG---IAVLGVARSRHPS-----LA-------------------------------- 40 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhCC---CEEEEEecCcchh-----hh--------------------------------
Confidence 4689999999999999999999998 7899999975321 00
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-----------CcCEEEEcCcccCh--------hh
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-----------QTTIIFHIAATVRF--------DE 188 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-----------~~d~Vih~a~~~~~--------~~ 188 (366)
.....++.++.+|+.+.+ .+..++. ..|++|||+|.... ..
T Consensus 41 --------------~~~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~~~~~~~~~v~~ag~~~~~~~~~~~~~~ 100 (243)
T PRK07023 41 --------------AAAGERLAEVELDLSDAA------AAAAWLAGDLLAAFVDGASRVLLINNAGTVEPIGPLATLDAA 100 (243)
T ss_pred --------------hccCCeEEEEEeccCCHH------HHHHHHHHHHHHHhccCCCceEEEEcCcccCCCCccccCCHH
Confidence 001246788999999976 4544221 46899999997432 23
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcc
Q psy17528 189 HIRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHI 265 (366)
Q Consensus 189 ~~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (366)
.+...+++|+.+...+.+.+.+. .+.+++|++||..++....
T Consensus 101 ~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~----------------------------------- 145 (243)
T PRK07023 101 AIARAVGLNVAAPLMLTAALAQAASDAAERRILHISSGAARNAYA----------------------------------- 145 (243)
T ss_pred HHHHHeeeeehHHHHHHHHHHHHhhccCCCEEEEEeChhhcCCCC-----------------------------------
Confidence 45677888999977666554432 2456899999976542110
Q ss_pred cCCCCchHHHHHHHHHHHHHHhc----CCCCEEEEecCccccC
Q psy17528 266 IGGKPNSYTLTKATAEDLVRQVG----HELPICVLRPSIVFPT 304 (366)
Q Consensus 266 ~~~~~~~Y~~sK~~~E~~l~~~~----~gl~~~ilRp~~v~G~ 304 (366)
....|+.+|...|.+++.+. .++++.+++||.+-.+
T Consensus 146 ---~~~~Y~~sK~a~~~~~~~~~~~~~~~i~v~~v~pg~~~t~ 185 (243)
T PRK07023 146 ---GWSVYCATKAALDHHARAVALDANRALRIVSLAPGVVDTG 185 (243)
T ss_pred ---CchHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCccccH
Confidence 01679999999999998665 5899999999988554
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.3e-13 Score=125.61 Aligned_cols=206 Identities=16% Similarity=0.145 Sum_probs=131.0
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+|+|+||||+|+||++++++|+++| .+|++++|+... ++.++
T Consensus 1 ~k~vlItGasggiG~~ia~~l~~~g---~~V~~~~r~~~~-----~~~~~------------------------------ 42 (251)
T PRK06924 1 MRYVIITGTSQGLGEAIANQLLEKG---THVISISRTENK-----ELTKL------------------------------ 42 (251)
T ss_pred CcEEEEecCCchHHHHHHHHHHhcC---CEEEEEeCCchH-----HHHHH------------------------------
Confidence 3689999999999999999999998 789999987521 11111
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCc-----------CEEEEcCcccCh--------hh
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQT-----------TIIFHIAATVRF--------DE 188 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~-----------d~Vih~a~~~~~--------~~ 188 (366)
......++.++.+|+++.+ ++..+++.+ .++||++|.... ..
T Consensus 43 -------------~~~~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~~~~~~~~~v~~ag~~~~~~~~~~~~~~ 103 (251)
T PRK06924 43 -------------AEQYNSNLTFHSLDLQDVH------ELETNFNEILSSIQEDNVSSIHLINNAGMVAPIKPIEKAESE 103 (251)
T ss_pred -------------HhccCCceEEEEecCCCHH------HHHHHHHHHHHhcCcccCCceEEEEcceecccCcccccCCHH
Confidence 1111346788999999976 566555421 278999986421 23
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh----cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhc
Q psy17528 189 HIRTAYNINVKGTQTILALAKR----MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEH 264 (366)
Q Consensus 189 ~~~~~~~~nv~~~~~ll~~a~~----~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 264 (366)
.+...+++|+.+...+++.+.+ .+..++||++||..+....
T Consensus 104 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~----------------------------------- 148 (251)
T PRK06924 104 ELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISSGAAKNPY----------------------------------- 148 (251)
T ss_pred HHHHHhccceehHHHHHHHHHHHHhccCCCceEEEecchhhcCCC-----------------------------------
Confidence 4566788898887666655433 2234689999997653111
Q ss_pred ccCCCCchHHHHHHHHHHHHHHhc-------CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCC
Q psy17528 265 IIGGKPNSYTLTKATAEDLVRQVG-------HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTD 337 (366)
Q Consensus 265 ~~~~~~~~Y~~sK~~~E~~l~~~~-------~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~ 337 (366)
+....|+.+|...+.+++.+. .++.+..++||.+-.+....... ..... ......... ..
T Consensus 149 ---~~~~~Y~~sKaa~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~-~~~~~--~~~~~~~~~-----~~-- 215 (251)
T PRK06924 149 ---FGWSAYCSSKAGLDMFTQTVATEQEEEEYPVKIVAFSPGVMDTNMQAQIRS-SSKED--FTNLDRFIT-----LK-- 215 (251)
T ss_pred ---CCcHHHhHHHHHHHHHHHHHHHHhhhcCCCeEEEEecCCccccHhHHHHHh-cCccc--chHHHHHHH-----Hh--
Confidence 001679999999999987664 36889999999886543210000 00000 000000010 00
Q ss_pred CCcccCcccHHHHHHHHHHHHHh
Q psy17528 338 PNISMDVVPGDRVINAMAALAWY 360 (366)
Q Consensus 338 ~~~~~~~v~vdDva~ai~~~~~~ 360 (366)
...-+...+|+|++++.++..
T Consensus 216 --~~~~~~~~~dva~~~~~l~~~ 236 (251)
T PRK06924 216 --EEGKLLSPEYVAKALRNLLET 236 (251)
T ss_pred --hcCCcCCHHHHHHHHHHHHhc
Confidence 011368899999999998876
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-12 Score=139.39 Aligned_cols=169 Identities=12% Similarity=0.145 Sum_probs=124.6
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++++++||||+|+||.+++++|++.| .+|++++|+.+. .+.+.+. +..
T Consensus 368 ~~~~k~vlItGas~giG~~la~~l~~~G---~~V~~~~r~~~~---~~~~~~~--------~~~---------------- 417 (657)
T PRK07201 368 PLVGKVVLITGASSGIGRATAIKVAEAG---ATVFLVARNGEA---LDELVAE--------IRA---------------- 417 (657)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHH---HHHHHHH--------HHh----------------
Confidence 4668999999999999999999999998 799999997432 1111111 100
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC---h------hh
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR---F------DE 188 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~---~------~~ 188 (366)
...++.++.+|+.+.+ .+.++++ .+|++|||||... . ..
T Consensus 418 -------------------~~~~~~~~~~Dv~~~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~ 472 (657)
T PRK07201 418 -------------------KGGTAHAYTCDLTDSA------AVDHTVKDILAEHGHVDYLVNNAGRSIRRSVENSTDRFH 472 (657)
T ss_pred -------------------cCCcEEEEEecCCCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCCCHH
Confidence 1246888999999976 6666554 5899999999641 1 13
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcc
Q psy17528 189 HIRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHI 265 (366)
Q Consensus 189 ~~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (366)
.+...+++|+.++..+++.+.+. .+..+||++||..++....
T Consensus 473 ~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~----------------------------------- 517 (657)
T PRK07201 473 DYERTMAVNYFGAVRLILGLLPHMRERRFGHVVNVSSIGVQTNAP----------------------------------- 517 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCCCC-----------------------------------
Confidence 46678899999988877665321 2556899999987653211
Q ss_pred cCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCC
Q psy17528 266 IGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQ 306 (366)
Q Consensus 266 ~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~ 306 (366)
....|+.+|...+.+++... .++.+++++||.|.++..
T Consensus 518 ---~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~T~~~ 560 (657)
T PRK07201 518 ---RFSAYVASKAALDAFSDVAASETLSDGITFTTIHMPLVRTPMI 560 (657)
T ss_pred ---CcchHHHHHHHHHHHHHHHHHHHHhhCCcEEEEECCcCccccc
Confidence 01679999999999987755 689999999999987644
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-12 Score=123.52 Aligned_cols=208 Identities=13% Similarity=0.087 Sum_probs=134.4
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||.+++++|++.| .+|++..|+... ..+.+.+. +..
T Consensus 5 ~~~k~~lItGa~~gIG~~ia~~l~~~G---~~vvi~~~~~~~--~~~~~~~~--------l~~----------------- 54 (261)
T PRK08936 5 LEGKVVVITGGSTGLGRAMAVRFGKEK---AKVVINYRSDEE--EANDVAEE--------IKK----------------- 54 (261)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEeCCCHH--HHHHHHHH--------HHH-----------------
Confidence 678999999999999999999999998 778887775421 11111111 111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~ 191 (366)
...++.++.+|+.+.+ .+..+++ .+|++||+||.... ...++
T Consensus 55 ------------------~~~~~~~~~~Dl~~~~------~i~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~ 110 (261)
T PRK08936 55 ------------------AGGEAIAVKGDVTVES------DVVNLIQTAVKEFGTLDVMINNAGIENAVPSHEMSLEDWN 110 (261)
T ss_pred ------------------cCCeEEEEEecCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHH
Confidence 1246778899999876 5555443 57999999996421 13456
Q ss_pred HHHHHHHHHHHHHHH----HHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 192 TAYNINVKGTQTILA----LAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~----~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
..+++|+.+...+++ .+.+.+...++|++||...+...
T Consensus 111 ~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~~~~-------------------------------------- 152 (261)
T PRK08936 111 KVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQIPW-------------------------------------- 152 (261)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEccccccCCC--------------------------------------
Confidence 678899887765544 33443224689999996543111
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
+....|+.+|...+.+.+... .++.+++++||.|.++..... +.. ........... ...
T Consensus 153 ~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~------~~~-~~~~~~~~~~~---------~~~ 216 (261)
T PRK08936 153 PLFVHYAASKGGVKLMTETLAMEYAPKGIRVNNIGPGAINTPINAEK------FAD-PKQRADVESMI---------PMG 216 (261)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECcCCCCccccc------cCC-HHHHHHHHhcC---------CCC
Confidence 011679999987777666554 689999999999988743210 000 01111111111 122
Q ss_pred CcccHHHHHHHHHHHHHhh
Q psy17528 343 DVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~ 361 (366)
.+...+|+++++.+++...
T Consensus 217 ~~~~~~~va~~~~~l~s~~ 235 (261)
T PRK08936 217 YIGKPEEIAAVAAWLASSE 235 (261)
T ss_pred CCcCHHHHHHHHHHHcCcc
Confidence 4667899999999988654
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-13 Score=127.58 Aligned_cols=195 Identities=19% Similarity=0.195 Sum_probs=130.6
Q ss_pred EEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccccc
Q psy17528 51 IFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNYFN 130 (366)
Q Consensus 51 ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (366)
|+|+||||.+|+.+++.|++.+ ++|.+++|+.++. ..+ .++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~---~~V~~l~R~~~~~-~~~------------~l~~---------------------- 42 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAG---FSVRALVRDPSSD-RAQ------------QLQA---------------------- 42 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---GCEEEEESSSHHH-HHH------------HHHH----------------------
T ss_pred CEEECCccHHHHHHHHHHHhCC---CCcEEEEeccchh-hhh------------hhhc----------------------
Confidence 7999999999999999999987 8999999986321 111 1111
Q ss_pred hhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHHHHHHh
Q psy17528 131 DAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALAKR 210 (366)
Q Consensus 131 ~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll~~a~~ 210 (366)
..++++.+|+.+.+ .+.++++++|.||.+.+... ........++++++++
T Consensus 43 ---------------~g~~vv~~d~~~~~------~l~~al~g~d~v~~~~~~~~---------~~~~~~~~~li~Aa~~ 92 (233)
T PF05368_consen 43 ---------------LGAEVVEADYDDPE------SLVAALKGVDAVFSVTPPSH---------PSELEQQKNLIDAAKA 92 (233)
T ss_dssp ---------------TTTEEEES-TT-HH------HHHHHHTTCSEEEEESSCSC---------CCHHHHHHHHHHHHHH
T ss_pred ---------------ccceEeecccCCHH------HHHHHHcCCceEEeecCcch---------hhhhhhhhhHHHhhhc
Confidence 35678899999877 89999999999999888543 1123345678999999
Q ss_pred cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHHhcCC
Q psy17528 211 MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVGHE 290 (366)
Q Consensus 211 ~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~~g 290 (366)
. ++++||+.|-...+.... ... | .......|...|+.+++. +
T Consensus 93 a-gVk~~v~ss~~~~~~~~~----~~~--p-----------------------------~~~~~~~k~~ie~~l~~~--~ 134 (233)
T PF05368_consen 93 A-GVKHFVPSSFGADYDESS----GSE--P-----------------------------EIPHFDQKAEIEEYLRES--G 134 (233)
T ss_dssp H-T-SEEEESEESSGTTTTT----TST--T-----------------------------HHHHHHHHHHHHHHHHHC--T
T ss_pred c-ccceEEEEEecccccccc----ccc--c-----------------------------cchhhhhhhhhhhhhhhc--c
Confidence 8 699999755433321100 000 0 034556899999999887 7
Q ss_pred CCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCc--ceeecCCCCcccCcc-cHHHHHHHHHHHHHhhhh
Q psy17528 291 LPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGL--IRVVQTDPNISMDVV-PGDRVINAMAALAWYFLF 363 (366)
Q Consensus 291 l~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~l~~~~~~~~~~v-~vdDva~ai~~~~~~~~~ 363 (366)
+++++|||++.+.....+... .....+. ...++++++....++ ..+|++++++.++..|..
T Consensus 135 i~~t~i~~g~f~e~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvg~~va~il~~p~~ 198 (233)
T PF05368_consen 135 IPYTIIRPGFFMENLLPPFAP------------VVDIKKSKDVVTLPGPGNQKAVPVTDTRDVGRAVAAILLDPEK 198 (233)
T ss_dssp SEBEEEEE-EEHHHHHTTTHH------------TTCSCCTSSEEEEETTSTSEEEEEEHHHHHHHHHHHHHHSGGG
T ss_pred ccceeccccchhhhhhhhhcc------------cccccccceEEEEccCCCccccccccHHHHHHHHHHHHcChHH
Confidence 999999999866432211100 0011111 245566667666675 999999999999988754
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.5e-13 Score=126.28 Aligned_cols=213 Identities=11% Similarity=0.098 Sum_probs=140.8
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||.+++++|++.| .+|+++.|+... .+++.+. +..
T Consensus 8 ~~~k~~lItGa~~~iG~~ia~~l~~~G---~~vv~~~~~~~~---~~~~~~~--------~~~----------------- 56 (265)
T PRK07097 8 LKGKIALITGASYGIGFAIAKAYAKAG---ATIVFNDINQEL---VDKGLAA--------YRE----------------- 56 (265)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC---CeEEEEeCCHHH---HHHHHHH--------HHh-----------------
Confidence 357899999999999999999999998 788888886432 1111111 111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
...++.++.+|+++.+ .+.+++. .+|+|||+||... ....+.
T Consensus 57 ------------------~~~~~~~~~~Dl~~~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~ 112 (265)
T PRK07097 57 ------------------LGIEAHGYVCDVTDED------GVQAMVSQIEKEVGVIDILVNNAGIIKRIPMLEMSAEDFR 112 (265)
T ss_pred ------------------cCCceEEEEcCCCCHH------HHHHHHHHHHHhCCCCCEEEECCCCCCCCCcccCCHHHHH
Confidence 1246788999999986 6666553 4799999999753 224557
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
..+++|+.+...+.+.+.+. .+..+||++||....... .
T Consensus 113 ~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~--------------------------------------~ 154 (265)
T PRK07097 113 QVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSMMSELGR--------------------------------------E 154 (265)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhcCCcEEEEEcCccccCCC--------------------------------------C
Confidence 78889999988877765431 245689999996432111 0
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
....|+.+|...+.+++.+. .++.++.++||.|.++...+......... ...+....... .....
T Consensus 155 ~~~~Y~~sKaal~~l~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~-~~~~~~~~~~~---------~~~~~ 224 (265)
T PRK07097 155 TVSAYAAAKGGLKMLTKNIASEYGEANIQCNGIGPGYIATPQTAPLRELQADGS-RHPFDQFIIAK---------TPAAR 224 (265)
T ss_pred CCccHHHHHHHHHHHHHHHHHHhhhcCceEEEEEeccccccchhhhhhcccccc-chhHHHHHHhc---------CCccC
Confidence 01679999999999988776 68999999999999875432111000000 00010111110 01123
Q ss_pred cccHHHHHHHHHHHHHhh
Q psy17528 344 VVPGDRVINAMAALAWYF 361 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~~ 361 (366)
+...+|+|.+++.++..+
T Consensus 225 ~~~~~dva~~~~~l~~~~ 242 (265)
T PRK07097 225 WGDPEDLAGPAVFLASDA 242 (265)
T ss_pred CcCHHHHHHHHHHHhCcc
Confidence 667899999999988753
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.6e-13 Score=123.02 Aligned_cols=205 Identities=15% Similarity=0.078 Sum_probs=137.0
Q ss_pred EEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccccch
Q psy17528 52 FITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNYFND 131 (366)
Q Consensus 52 lItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (366)
+||||+|+||.+++++|++.| .+|+++.|+... .+.+.+ .+
T Consensus 1 lItGas~~iG~~~a~~l~~~G---~~v~~~~r~~~~---~~~~~~--------~~------------------------- 41 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEG---ARVTIASRSRDR---LAAAAR--------AL------------------------- 41 (230)
T ss_pred CeecCCChHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHH--------HH-------------------------
Confidence 699999999999999999998 789999997421 111110 00
Q ss_pred hhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh---CcCEEEEcCcccCh-------hhhHHHHHHHHHHHH
Q psy17528 132 AVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS---QTTIIFHIAATVRF-------DEHIRTAYNINVKGT 201 (366)
Q Consensus 132 ~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~---~~d~Vih~a~~~~~-------~~~~~~~~~~nv~~~ 201 (366)
. ...++.++.+|+.+.+ ++..+++ .+|++||++|.... .......+++|+.+.
T Consensus 42 ---------~--~~~~~~~~~~Dl~~~~------~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~ 104 (230)
T PRK07041 42 ---------G--GGAPVRTAALDITDEA------AVDAFFAEAGPFDHVVITAADTPGGPVRALPLAAAQAAMDSKFWGA 104 (230)
T ss_pred ---------h--cCCceEEEEccCCCHH------HHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHH
Confidence 0 1246788999999987 6777665 47999999996421 234577889999999
Q ss_pred HHHHHHHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHH
Q psy17528 202 QTILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAE 281 (366)
Q Consensus 202 ~~ll~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E 281 (366)
..+.++... .+..++|++||..++.... ....|+.+|...+
T Consensus 105 ~~l~~~~~~-~~~g~iv~~ss~~~~~~~~--------------------------------------~~~~Y~~sK~a~~ 145 (230)
T PRK07041 105 YRVARAARI-APGGSLTFVSGFAAVRPSA--------------------------------------SGVLQGAINAALE 145 (230)
T ss_pred HHHHhhhhh-cCCeEEEEECchhhcCCCC--------------------------------------cchHHHHHHHHHH
Confidence 999985443 3567999999987653211 1167999999999
Q ss_pred HHHHHhc---CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHH
Q psy17528 282 DLVRQVG---HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALA 358 (366)
Q Consensus 282 ~~l~~~~---~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~ 358 (366)
.+++... .+++++.++|+.+-++...... .. ....+........+ ...+...+|+|++++.++
T Consensus 146 ~~~~~la~e~~~irv~~i~pg~~~t~~~~~~~---~~--~~~~~~~~~~~~~~---------~~~~~~~~dva~~~~~l~ 211 (230)
T PRK07041 146 ALARGLALELAPVRVNTVSPGLVDTPLWSKLA---GD--AREAMFAAAAERLP---------ARRVGQPEDVANAILFLA 211 (230)
T ss_pred HHHHHHHHHhhCceEEEEeecccccHHHHhhh---cc--chHHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHh
Confidence 9988776 4588999999988664321100 00 00111111111111 112456799999999988
Q ss_pred HhhhhcC
Q psy17528 359 WYFLFSC 365 (366)
Q Consensus 359 ~~~~~~~ 365 (366)
.....+|
T Consensus 212 ~~~~~~G 218 (230)
T PRK07041 212 ANGFTTG 218 (230)
T ss_pred cCCCcCC
Confidence 7654333
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.5e-13 Score=123.43 Aligned_cols=207 Identities=15% Similarity=0.140 Sum_probs=131.4
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+++|+||||+|+||+.+++.|++.| ++|+++.++... ..+.+.+. +..
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g---~~v~~~~~~~~~--~~~~~~~~--------~~~------------------- 49 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARG---WSVGINYARDAA--AAEETADA--------VRA------------------- 49 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCC---CEEEEEeCCCHH--HHHHHHHH--------HHh-------------------
Confidence 4799999999999999999999998 677666543211 11111111 100
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh--------hhhHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF--------DEHIRT 192 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~--------~~~~~~ 192 (366)
...++.++.+|+.+.+ ++..+++ .+|+|||+||.... ..++..
T Consensus 50 ----------------~~~~~~~~~~Dl~~~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~ 107 (248)
T PRK06947 50 ----------------AGGRACVVAGDVANEA------DVIAMFDAVQSAFGRLDALVNNAGIVAPSMPLADMDAARLRR 107 (248)
T ss_pred ----------------cCCcEEEEEeccCCHH------HHHHHHHHHHHhcCCCCEEEECCccCCCCCChhhCCHHHHHH
Confidence 1246788999999876 5554442 58999999996421 223466
Q ss_pred HHHHHHHHHHHHHHHHH-hcC--C---CcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 193 AYNINVKGTQTILALAK-RMK--G---LKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 193 ~~~~nv~~~~~ll~~a~-~~~--~---~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
.+++|+.++..+++.+. ... + -.+||++||........
T Consensus 108 ~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~~------------------------------------ 151 (248)
T PRK06947 108 MFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSP------------------------------------ 151 (248)
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcCCCC------------------------------------
Confidence 78899999888765433 221 1 23699999975431110
Q ss_pred CCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcc
Q psy17528 267 GGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNIS 341 (366)
Q Consensus 267 ~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~ 341 (366)
.....|+.+|...+.+++.+. .+++++++|||.+..+..... + . ........... ..
T Consensus 152 -~~~~~Y~~sK~~~~~~~~~la~~~~~~~i~v~~i~Pg~v~t~~~~~~-~----~---~~~~~~~~~~~---------~~ 213 (248)
T PRK06947 152 -NEYVDYAGSKGAVDTLTLGLAKELGPHGVRVNAVRPGLIETEIHASG-G----Q---PGRAARLGAQT---------PL 213 (248)
T ss_pred -CCCcccHhhHHHHHHHHHHHHHHhhhhCcEEEEEeccCccccccccc-C----C---HHHHHHHhhcC---------CC
Confidence 001469999999998887665 489999999999988743210 0 0 01111111000 01
Q ss_pred cCcccHHHHHHHHHHHHHhhh
Q psy17528 342 MDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 342 ~~~v~vdDva~ai~~~~~~~~ 362 (366)
.-....+|++++++.++..+.
T Consensus 214 ~~~~~~e~va~~~~~l~~~~~ 234 (248)
T PRK06947 214 GRAGEADEVAETIVWLLSDAA 234 (248)
T ss_pred CCCcCHHHHHHHHHHHcCccc
Confidence 124678999999999887653
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-12 Score=123.37 Aligned_cols=206 Identities=14% Similarity=0.069 Sum_probs=137.9
Q ss_pred ccCCCCeEEEeCCc--chHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccc
Q psy17528 44 EFYKDQTIFITGAT--GFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGI 121 (366)
Q Consensus 44 ~~~~~~~ilItGat--G~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (366)
..+++|+++||||+ +.||.+++++|++.| ++|++..|+.. ..+.+.++
T Consensus 3 ~~l~~k~~lItGas~~~gIG~a~a~~la~~G---~~Vi~~~r~~~---~~~~~~~~------------------------ 52 (252)
T PRK06079 3 GILSGKKIVVMGVANKRSIAWGCAQAIKDQG---ATVIYTYQNDR---MKKSLQKL------------------------ 52 (252)
T ss_pred cccCCCEEEEeCCCCCCchHHHHHHHHHHCC---CEEEEecCchH---HHHHHHhh------------------------
Confidence 34678999999999 799999999999999 88998888621 11111110
Q ss_pred ccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC---------
Q psy17528 122 THRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR--------- 185 (366)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~--------- 185 (366)
. ...+.++.+|+++++ ++.++++ .+|++|||||...
T Consensus 53 -------------------~---~~~~~~~~~Dl~~~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~ 104 (252)
T PRK06079 53 -------------------V---DEEDLLVECDVASDE------SIERAFATIKERVGKIDGIVHAIAYAKKEELGGNVT 104 (252)
T ss_pred -------------------c---cCceeEEeCCCCCHH------HHHHHHHHHHHHhCCCCEEEEcccccccccccCCcc
Confidence 0 135678899999876 5555442 5799999999642
Q ss_pred --hhhhHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhh
Q psy17528 186 --FDEHIRTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLN 262 (366)
Q Consensus 186 --~~~~~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 262 (366)
....++..+++|+.+...+.+.+.+. ....++|++||....... |
T Consensus 105 ~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~~~----------~---------------------- 152 (252)
T PRK06079 105 DTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFGSERAI----------P---------------------- 152 (252)
T ss_pred cCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEeccCccccC----------C----------------------
Confidence 12346778889999988888776542 223589999986543111 0
Q ss_pred hcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCC
Q psy17528 263 EHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTD 337 (366)
Q Consensus 263 ~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~ 337 (366)
....|+.+|...+.+.+... +|+.++.|.||.|-.+.... +. ........... . .
T Consensus 153 ------~~~~Y~asKaal~~l~~~la~el~~~gI~vn~i~PG~v~T~~~~~---~~----~~~~~~~~~~~-~---~--- 212 (252)
T PRK06079 153 ------NYNVMGIAKAALESSVRYLARDLGKKGIRVNAISAGAVKTLAVTG---IK----GHKDLLKESDS-R---T--- 212 (252)
T ss_pred ------cchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCccccccccc---CC----ChHHHHHHHHh-c---C---
Confidence 11679999999999987765 68999999999997653211 10 00111111111 1 0
Q ss_pred CCcccCcccHHHHHHHHHHHHHhh
Q psy17528 338 PNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 338 ~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
....+...+|+|++++.++...
T Consensus 213 --p~~r~~~pedva~~~~~l~s~~ 234 (252)
T PRK06079 213 --VDGVGVTIEEVGNTAAFLLSDL 234 (252)
T ss_pred --cccCCCCHHHHHHHHHHHhCcc
Confidence 1123677899999999988654
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.2e-13 Score=121.83 Aligned_cols=201 Identities=14% Similarity=0.133 Sum_probs=133.0
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++|+||||+|+||+++++.|++.| .+|++++|++.. .+.+.+.+. .
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G---~~V~~~~r~~~~---~~~~~~~~~--------~----------------- 51 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEG---AQVCINSRNENK---LKRMKKTLS--------K----------------- 51 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHHHH--------h-----------------
Confidence 357899999999999999999999998 799999997431 111211110 0
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-----hhhHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-----DEHIRTA 193 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-----~~~~~~~ 193 (366)
...+.++.+|+.+.+ .+..+++ .+|.+||+++.... .......
T Consensus 52 -------------------~~~~~~~~~Dl~~~~------~~~~~~~~~~~~~~~id~ii~~ag~~~~~~~~~~~~~~~~ 106 (238)
T PRK05786 52 -------------------YGNIHYVVGDVSSTE------SARNVIEKAAKVLNAIDGLVVTVGGYVEDTVEEFSGLEEM 106 (238)
T ss_pred -------------------cCCeEEEECCCCCHH------HHHHHHHHHHHHhCCCCEEEEcCCCcCCCchHHHHHHHHH
Confidence 135788899999876 5554443 46999999985321 1234556
Q ss_pred HHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCch
Q psy17528 194 YNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNS 272 (366)
Q Consensus 194 ~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (366)
++.|+.+...+++.+.+. ....++|++||....... . +....
T Consensus 107 ~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~---------~----------------------------~~~~~ 149 (238)
T PRK05786 107 LTNHIKIPLYAVNASLRFLKEGSSIVLVSSMSGIYKA---------S----------------------------PDQLS 149 (238)
T ss_pred HHHhchHHHHHHHHHHHHHhcCCEEEEEecchhcccC---------C----------------------------CCchH
Confidence 788988887777766542 122579999986542100 0 00157
Q ss_pred HHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccH
Q psy17528 273 YTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPG 347 (366)
Q Consensus 273 Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~v 347 (366)
|+.+|...+.+++... ++++++++||++++++.... ..+ .. .. .....++..
T Consensus 150 Y~~sK~~~~~~~~~~~~~~~~~gi~v~~i~pg~v~~~~~~~-~~~------------~~-------~~---~~~~~~~~~ 206 (238)
T PRK05786 150 YAVAKAGLAKAVEILASELLGRGIRVNGIAPTTISGDFEPE-RNW------------KK-------LR---KLGDDMAPP 206 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCCCCch-hhh------------hh-------hc---cccCCCCCH
Confidence 9999998887776655 58999999999999864210 000 00 00 001235778
Q ss_pred HHHHHHHHHHHHhhh
Q psy17528 348 DRVINAMAALAWYFL 362 (366)
Q Consensus 348 dDva~ai~~~~~~~~ 362 (366)
+|++++++.++..+.
T Consensus 207 ~~va~~~~~~~~~~~ 221 (238)
T PRK05786 207 EDFAKVIIWLLTDEA 221 (238)
T ss_pred HHHHHHHHHHhcccc
Confidence 999999999886543
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.2e-12 Score=118.18 Aligned_cols=158 Identities=16% Similarity=0.237 Sum_probs=113.8
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+++++||||+|+||.+++++|++.| ++|++++|+.... .+.+. .
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~--~~~~~------------~------------------- 45 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQG---QPVIVSYRTHYPA--IDGLR------------Q------------------- 45 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCC---CeEEEEeCCchhH--HHHHH------------H-------------------
Confidence 4689999999999999999999998 8999999975321 11110 0
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIRTA 193 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~~~ 193 (366)
..+.++.+|+.+.+ .+..++. .+|++||+||... ....++..
T Consensus 46 ------------------~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~ 101 (236)
T PRK06483 46 ------------------AGAQCIQADFSTNA------GIMAFIDELKQHTDGLRAIIHNASDWLAEKPGAPLADVLARM 101 (236)
T ss_pred ------------------cCCEEEEcCCCCHH------HHHHHHHHHHhhCCCccEEEECCccccCCCcCccCHHHHHHH
Confidence 13567899999876 5554442 4899999999632 13456778
Q ss_pred HHHHHHHHHHHHHHHHhc---CC--CcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 194 YNINVKGTQTILALAKRM---KG--LKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 194 ~~~nv~~~~~ll~~a~~~---~~--~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
+++|+.++..+.+.+.+. .+ ..++|++||....... .
T Consensus 102 ~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~--------------------------------------~ 143 (236)
T PRK06483 102 MQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVVEKGS--------------------------------------D 143 (236)
T ss_pred HHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhhccCC--------------------------------------C
Confidence 899999988776655432 12 3589999886432111 0
Q ss_pred CCchHHHHHHHHHHHHHHhc----CCCCEEEEecCcccc
Q psy17528 269 KPNSYTLTKATAEDLVRQVG----HELPICVLRPSIVFP 303 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~----~gl~~~ilRp~~v~G 303 (366)
....|+.+|...|.+++.+. +++.+++++||.+..
T Consensus 144 ~~~~Y~asKaal~~l~~~~a~e~~~~irvn~v~Pg~~~~ 182 (236)
T PRK06483 144 KHIAYAASKAALDNMTLSFAAKLAPEVKVNSIAPALILF 182 (236)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHCCCcEEEEEccCceec
Confidence 11679999999999998776 469999999998853
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.5e-13 Score=125.57 Aligned_cols=205 Identities=12% Similarity=0.111 Sum_probs=138.5
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|.||.+++++|.+.| ++|+++++... .+...++ ..
T Consensus 8 l~~k~~lItG~~~gIG~a~a~~l~~~G---~~vv~~~~~~~----~~~~~~~---------~~----------------- 54 (253)
T PRK08993 8 LEGKVAVVTGCDTGLGQGMALGLAEAG---CDIVGINIVEP----TETIEQV---------TA----------------- 54 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEecCcch----HHHHHHH---------Hh-----------------
Confidence 568999999999999999999999998 78887766432 1111111 00
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~ 191 (366)
...++..+.+|+.+.+ ++..+++ .+|++|||||.... ...++
T Consensus 55 ------------------~~~~~~~~~~Dl~~~~------~~~~~~~~~~~~~~~~D~li~~Ag~~~~~~~~~~~~~~~~ 110 (253)
T PRK08993 55 ------------------LGRRFLSLTADLRKID------GIPALLERAVAEFGHIDILVNNAGLIRREDAIEFSEKDWD 110 (253)
T ss_pred ------------------cCCeEEEEECCCCCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHH
Confidence 1245778899999876 5655553 58999999997431 24567
Q ss_pred HHHHHHHHHHHHHHHHHHhc----CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 192 TAYNINVKGTQTILALAKRM----KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~----~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
..+++|+.++..+++.+... +.-.++|++||..++....
T Consensus 111 ~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------------------------------- 153 (253)
T PRK08993 111 DVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGGI------------------------------------- 153 (253)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhccCCC-------------------------------------
Confidence 88999999999888876432 1235899999986553211
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
....|+.+|...+.+.+... +|+.++.++||.+-.+..... .. . .......... ++ ..
T Consensus 154 -~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pG~v~T~~~~~~---~~--~--~~~~~~~~~~----~p-----~~ 216 (253)
T PRK08993 154 -RVPSYTASKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNNTQQL---RA--D--EQRSAEILDR----IP-----AG 216 (253)
T ss_pred -CCcchHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccCcchhhh---cc--c--hHHHHHHHhc----CC-----CC
Confidence 01579999999998887765 689999999999987643211 00 0 0011111111 11 12
Q ss_pred CcccHHHHHHHHHHHHHhh
Q psy17528 343 DVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~ 361 (366)
-+...+|++++++.++...
T Consensus 217 r~~~p~eva~~~~~l~s~~ 235 (253)
T PRK08993 217 RWGLPSDLMGPVVFLASSA 235 (253)
T ss_pred CCcCHHHHHHHHHHHhCcc
Confidence 3667899999999988654
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.8e-13 Score=126.57 Aligned_cols=164 Identities=18% Similarity=0.221 Sum_probs=118.3
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||.+++++|++.| ++|++++|+... .+.+.+
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~---~~~l~~----------------------------- 47 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEG---ARVAVLDKSAAG---LQELEA----------------------------- 47 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHh-----------------------------
Confidence 468999999999999999999999999 889999886421 111110
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC----h---h----
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR----F---D---- 187 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~----~---~---- 187 (366)
....++.++.+|+.+.+ .+.++++ .+|++|||||... . .
T Consensus 48 -----------------~~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~ 104 (262)
T TIGR03325 48 -----------------AHGDAVVGVEGDVRSLD------DHKEAVARCVAAFGKIDCLIPNAGIWDYSTALVDIPDDRI 104 (262)
T ss_pred -----------------hcCCceEEEEeccCCHH------HHHHHHHHHHHHhCCCCEEEECCCCCccCCccccCCchhh
Confidence 01245778899999875 4444443 5799999998632 1 1
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHhc--CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhc
Q psy17528 188 -EHIRTAYNINVKGTQTILALAKRM--KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEH 264 (366)
Q Consensus 188 -~~~~~~~~~nv~~~~~ll~~a~~~--~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 264 (366)
..++..+++|+.++..+++++.+. ....++|++||...+...
T Consensus 105 ~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~~sS~~~~~~~----------------------------------- 149 (262)
T TIGR03325 105 DEAFDEVFHINVKGYLLAVKAALPALVASRGSVIFTISNAGFYPN----------------------------------- 149 (262)
T ss_pred hHHHHHhheeecHhHHHHHHHHHHHHhhcCCCEEEEeccceecCC-----------------------------------
Confidence 245678899999999998877542 122478888887544111
Q ss_pred ccCCCCchHHHHHHHHHHHHHHhc----CCCCEEEEecCccccCC
Q psy17528 265 IIGGKPNSYTLTKATAEDLVRQVG----HELPICVLRPSIVFPTL 305 (366)
Q Consensus 265 ~~~~~~~~Y~~sK~~~E~~l~~~~----~gl~~~ilRp~~v~G~~ 305 (366)
.....|+.+|...+.+++.+. ..+.++.+.||.|..+.
T Consensus 150 ---~~~~~Y~~sKaa~~~l~~~la~e~~~~irvn~i~PG~i~t~~ 191 (262)
T TIGR03325 150 ---GGGPLYTAAKHAVVGLVKELAFELAPYVRVNGVAPGGMSSDL 191 (262)
T ss_pred ---CCCchhHHHHHHHHHHHHHHHHhhccCeEEEEEecCCCcCCC
Confidence 001579999999999998776 34889999999998764
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.1e-13 Score=128.85 Aligned_cols=181 Identities=14% Similarity=0.154 Sum_probs=121.5
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||.+++++|++.| .+|+++.|+.+.. .+.+.+ +...
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G---~~Vil~~R~~~~~--~~~~~~---------l~~~---------------- 61 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAG---AEVILPVRNRAKG--EAAVAA---------IRTA---------------- 61 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEeCCHHHH--HHHHHH---------HHHh----------------
Confidence 568999999999999999999999998 8999999975321 111111 1110
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccChh------hhHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRFD------EHIRT 192 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~~------~~~~~ 192 (366)
. ...++.++.+|+.+.+ ++..+++ .+|++|||||..... ..++.
T Consensus 62 ---------------~--~~~~v~~~~~Dl~d~~------sv~~~~~~~~~~~~~iD~li~nAG~~~~~~~~~t~~~~e~ 118 (313)
T PRK05854 62 ---------------V--PDAKLSLRALDLSSLA------SVAALGEQLRAEGRPIHLLINNAGVMTPPERQTTADGFEL 118 (313)
T ss_pred ---------------C--CCCceEEEEecCCCHH------HHHHHHHHHHHhCCCccEEEECCccccCCccccCcccHHH
Confidence 1 1136889999999876 5655543 489999999975321 34567
Q ss_pred HHHHHHHHHHHHHHHHHhc--CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCC
Q psy17528 193 AYNINVKGTQTILALAKRM--KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKP 270 (366)
Q Consensus 193 ~~~~nv~~~~~ll~~a~~~--~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (366)
.+++|+.+...+.+.+... .+..++|++||............-....+. ...
T Consensus 119 ~~~vN~~g~~~l~~~llp~l~~~~~riv~vsS~~~~~~~~~~~~~~~~~~~--------------------------~~~ 172 (313)
T PRK05854 119 QFGTNHLGHFALTAHLLPLLRAGRARVTSQSSIAARRGAINWDDLNWERSY--------------------------AGM 172 (313)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhCCCCeEEEechhhcCCCcCcccccccccC--------------------------cch
Confidence 8899999988777665421 123589999997543221100000000000 111
Q ss_pred chHHHHHHHHHHHHHHhc-------CCCCEEEEecCccccCC
Q psy17528 271 NSYTLTKATAEDLVRQVG-------HELPICVLRPSIVFPTL 305 (366)
Q Consensus 271 ~~Y~~sK~~~E~~l~~~~-------~gl~~~ilRp~~v~G~~ 305 (366)
..|+.+|+..+.+.+++. +++.++.+.||.|..+.
T Consensus 173 ~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v~PG~v~T~~ 214 (313)
T PRK05854 173 RAYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPGVAPTNL 214 (313)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecceeccCc
Confidence 679999999999887663 47999999999997653
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.7e-12 Score=124.32 Aligned_cols=165 Identities=17% Similarity=0.148 Sum_probs=117.0
Q ss_pred cccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccc
Q psy17528 43 QEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGIT 122 (366)
Q Consensus 43 ~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (366)
...+++++++||||+|+||.+++++|++.| .+|++.+|.... ..+.+.+. ++.
T Consensus 7 ~~~l~~k~~lVTGas~gIG~~ia~~L~~~G---a~Vv~~~~~~~~--~~~~~~~~--------i~~-------------- 59 (306)
T PRK07792 7 TTDLSGKVAVVTGAAAGLGRAEALGLARLG---ATVVVNDVASAL--DASDVLDE--------IRA-------------- 59 (306)
T ss_pred CcCCCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEecCCchh--HHHHHHHH--------HHh--------------
Confidence 345678999999999999999999999998 788888875321 11111111 111
Q ss_pred cccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh------CcCEEEEcCcccCh-------hhh
Q psy17528 123 HRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS------QTTIIFHIAATVRF-------DEH 189 (366)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~------~~d~Vih~a~~~~~-------~~~ 189 (366)
...++.++.+|+.+.+ .+..+++ .+|++|||||.... ...
T Consensus 60 ---------------------~g~~~~~~~~Dv~d~~------~~~~~~~~~~~~g~iD~li~nAG~~~~~~~~~~~~~~ 112 (306)
T PRK07792 60 ---------------------AGAKAVAVAGDISQRA------TADELVATAVGLGGLDIVVNNAGITRDRMLFNMSDEE 112 (306)
T ss_pred ---------------------cCCeEEEEeCCCCCHH------HHHHHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHH
Confidence 1246788999999976 5555443 58999999997532 245
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc-----C-----CCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHH
Q psy17528 190 IRTAYNINVKGTQTILALAKRM-----K-----GLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIA 259 (366)
Q Consensus 190 ~~~~~~~nv~~~~~ll~~a~~~-----~-----~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~ 259 (366)
++..+++|+.++..+++.+... . ...++|++||........
T Consensus 113 ~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~----------------------------- 163 (306)
T PRK07792 113 WDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGLVGPV----------------------------- 163 (306)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCcccccCCC-----------------------------
Confidence 6778899999999988865421 0 124899999876442110
Q ss_pred hhhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecC
Q psy17528 260 LLNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPS 299 (366)
Q Consensus 260 ~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~ 299 (366)
....|+.+|...+.+.+.+. +|+.++++.|+
T Consensus 164 ---------~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~i~Pg 199 (306)
T PRK07792 164 ---------GQANYGAAKAGITALTLSAARALGRYGVRANAICPR 199 (306)
T ss_pred ---------CCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEECCC
Confidence 01579999999999887655 68999999997
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-12 Score=122.19 Aligned_cols=169 Identities=12% Similarity=0.101 Sum_probs=117.4
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||.+++++|++.| .+|++++|+.... +...+. +...
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G---~~V~~~~r~~~~~---~~~~~~--------~~~~---------------- 55 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAG---ASVAICGRDEERL---ASAEAR--------LREK---------------- 55 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC---CeEEEEeCCHHHH---HHHHHH--------HHhh----------------
Confidence 568999999999999999999999998 7899999975321 111111 1110
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~ 191 (366)
. ...++.++.+|+++.+ .+.+++. .+|++|||||.... ...+.
T Consensus 56 ---------------~--~~~~~~~~~~D~~~~~------~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~ 112 (265)
T PRK07062 56 ---------------F--PGARLLAARCDVLDEA------DVAAFAAAVEARFGGVDMLVNNAGQGRVSTFADTTDDAWR 112 (265)
T ss_pred ---------------C--CCceEEEEEecCCCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHH
Confidence 0 1136778899999976 5554442 57999999996421 23456
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
..+++|+.+...+.+.+... .+..++|++||........
T Consensus 113 ~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------------------------------------- 154 (265)
T PRK07062 113 DELELKYFSVINPTRAFLPLLRASAAASIVCVNSLLALQPEP-------------------------------------- 154 (265)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhccCCcEEEEeccccccCCCC--------------------------------------
Confidence 77888888877666654321 2346899999976542110
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTL 305 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~ 305 (366)
....|+.+|...+.+.+... .|++++.++||.|..+.
T Consensus 155 ~~~~y~asKaal~~~~~~la~e~~~~gi~v~~i~PG~v~t~~ 196 (265)
T PRK07062 155 HMVATSAARAGLLNLVKSLATELAPKGVRVNSILLGLVESGQ 196 (265)
T ss_pred CchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccch
Confidence 01579999998887776544 68999999999987653
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-12 Score=123.88 Aligned_cols=206 Identities=14% Similarity=0.021 Sum_probs=134.9
Q ss_pred CCCCeEEEeCCc--chHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 46 YKDQTIFITGAT--GFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 46 ~~~~~ilItGat--G~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
+++|+++||||+ +.||.+++++|.+.| .+|++..|+.. ..+++.++.. .
T Consensus 3 l~~k~~lItGas~~~GIG~aiA~~la~~G---~~Vil~~r~~~---~~~~~~~~~~---------~-------------- 53 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKACFEQG---AELAFTYLNEA---LKKRVEPIAQ---------E-------------- 53 (274)
T ss_pred cCCcEEEEECCCCCCCHHHHHHHHHHHCC---CEEEEEecCHH---HHHHHHHHHH---------h--------------
Confidence 467999999997 799999999999998 78988888631 1122222111 0
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh----------
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF---------- 186 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~---------- 186 (366)
. ... .++.+|+++.+ .+..+++ .+|++|||||....
T Consensus 54 -----------------~---~~~-~~~~~Dv~d~~------~v~~~~~~i~~~~g~iDilVnnAG~~~~~~~~~~~~~~ 106 (274)
T PRK08415 54 -----------------L---GSD-YVYELDVSKPE------HFKSLAESLKKDLGKIDFIVHSVAFAPKEALEGSFLET 106 (274)
T ss_pred -----------------c---CCc-eEEEecCCCHH------HHHHHHHHHHHHcCCCCEEEECCccCcccccccccccC
Confidence 1 112 56889999986 5555443 57999999996421
Q ss_pred -hhhHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhc
Q psy17528 187 -DEHIRTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEH 264 (366)
Q Consensus 187 -~~~~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 264 (366)
...++..+++|+.+...+.+.+.+. ..-.++|++||....... |
T Consensus 107 ~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~~~~~~----------~------------------------ 152 (274)
T PRK08415 107 SKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLGGVKYV----------P------------------------ 152 (274)
T ss_pred CHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCCCccCC----------C------------------------
Confidence 2346778999999998888866542 223589999986543111 1
Q ss_pred ccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCC
Q psy17528 265 IIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPN 339 (366)
Q Consensus 265 ~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~ 339 (366)
....|+.+|...+.+.+... +|+.+..+.||.|..+....... +. . ........ .
T Consensus 153 ----~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~----~~---~-~~~~~~~~--------~ 212 (274)
T PRK08415 153 ----HYNVMGVAKAALESSVRYLAVDLGKKGIRVNAISAGPIKTLAASGIGD----FR---M-ILKWNEIN--------A 212 (274)
T ss_pred ----cchhhhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHhccch----hh---H-Hhhhhhhh--------C
Confidence 01579999999988887766 68999999999987643211000 00 0 00000000 0
Q ss_pred cccCcccHHHHHHHHHHHHHhh
Q psy17528 340 ISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 340 ~~~~~v~vdDva~ai~~~~~~~ 361 (366)
...-+...+|+|++++.++...
T Consensus 213 pl~r~~~pedva~~v~fL~s~~ 234 (274)
T PRK08415 213 PLKKNVSIEEVGNSGMYLLSDL 234 (274)
T ss_pred chhccCCHHHHHHHHHHHhhhh
Confidence 1123567899999999988653
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.48 E-value=2e-12 Score=121.95 Aligned_cols=209 Identities=14% Similarity=0.086 Sum_probs=136.7
Q ss_pred CCCCeEEEeCCc--chHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 46 YKDQTIFITGAT--GFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 46 ~~~~~ilItGat--G~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
+++++++||||+ +.||.+++++|.+.| .+|++..|+.......+.+.++ ..
T Consensus 4 l~~k~~lItGas~~~GIG~aia~~la~~G---~~v~~~~~~~~~~~~~~~~~~~---------~~--------------- 56 (258)
T PRK07370 4 LTGKKALVTGIANNRSIAWGIAQQLHAAG---AELGITYLPDEKGRFEKKVREL---------TE--------------- 56 (258)
T ss_pred cCCcEEEEeCCCCCCchHHHHHHHHHHCC---CEEEEEecCcccchHHHHHHHH---------Hh---------------
Confidence 468999999986 799999999999999 7888777754322222222221 00
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------h---
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------F--- 186 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~--- 186 (366)
. ..++.++.+|+++.+ ++..+++ .+|++|||||... .
T Consensus 57 -----------------~---~~~~~~~~~Dl~d~~------~v~~~~~~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~ 110 (258)
T PRK07370 57 -----------------P---LNPSLFLPCDVQDDA------QIEETFETIKQKWGKLDILVHCLAFAGKEELIGDFSAT 110 (258)
T ss_pred -----------------c---cCcceEeecCcCCHH------HHHHHHHHHHHHcCCCCEEEEcccccCcccccCcchhh
Confidence 0 123567889999987 5655443 5799999999642 1
Q ss_pred -hhhHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhc
Q psy17528 187 -DEHIRTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEH 264 (366)
Q Consensus 187 -~~~~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 264 (366)
...++..+++|+.++..+.+.+.+. ..-.++|++||....... |
T Consensus 111 ~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~----------~------------------------ 156 (258)
T PRK07370 111 SREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLGGVRAI----------P------------------------ 156 (258)
T ss_pred CHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEeccccccCC----------c------------------------
Confidence 1345678889999988888765532 122589999997543111 0
Q ss_pred ccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCC
Q psy17528 265 IIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPN 339 (366)
Q Consensus 265 ~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~ 339 (366)
....|+.+|...+.+.+... +|+.++.+.||.|-.+...... .. .......... .
T Consensus 157 ----~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~i~PG~v~T~~~~~~~----~~---~~~~~~~~~~---------~ 216 (258)
T PRK07370 157 ----NYNVMGVAKAALEASVRYLAAELGPKNIRVNAISAGPIRTLASSAVG----GI---LDMIHHVEEK---------A 216 (258)
T ss_pred ----ccchhhHHHHHHHHHHHHHHHHhCcCCeEEEEEecCcccCchhhccc----cc---hhhhhhhhhc---------C
Confidence 01679999999999988765 6899999999999775321110 00 1111111110 1
Q ss_pred cccCcccHHHHHHHHHHHHHhh
Q psy17528 340 ISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 340 ~~~~~v~vdDva~ai~~~~~~~ 361 (366)
....+...+|++++++.++...
T Consensus 217 p~~r~~~~~dva~~~~fl~s~~ 238 (258)
T PRK07370 217 PLRRTVTQTEVGNTAAFLLSDL 238 (258)
T ss_pred CcCcCCCHHHHHHHHHHHhChh
Confidence 1234667899999999988644
|
|
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.1e-12 Score=119.27 Aligned_cols=200 Identities=11% Similarity=0.086 Sum_probs=132.6
Q ss_pred EEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccccc
Q psy17528 51 IFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNYFN 130 (366)
Q Consensus 51 ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (366)
|+||||+|+||.++++.|++.| .+|+++.|+... ..+.+.+ .++.
T Consensus 1 vlItGas~giG~~~a~~l~~~G---~~v~~~~~~~~~--~~~~~~~--------~l~~---------------------- 45 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADG---FEICVHYHSGRS--DAESVVS--------AIQA---------------------- 45 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCCHH--HHHHHHH--------HHHH----------------------
Confidence 6899999999999999999998 788888876431 1111111 1111
Q ss_pred hhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHHHHHHH
Q psy17528 131 DAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIRTAYNI 196 (366)
Q Consensus 131 ~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~~~~~~ 196 (366)
...++.++.+|+.+.+ ++..+++ ..|.+||++|... ....++..+++
T Consensus 46 -------------~~~~~~~~~~Dl~~~~------~~~~~~~~~~~~~~~i~~li~~ag~~~~~~~~~~~~~~~~~~~~~ 106 (239)
T TIGR01831 46 -------------QGGNARLLQFDVADRV------ACRTLLEADIAEHGAYYGVVLNAGITRDAAFPALSEEDWDIVIHT 106 (239)
T ss_pred -------------cCCeEEEEEccCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHH
Confidence 1246889999999976 5554443 4699999999642 23456778999
Q ss_pred HHHHHHHHHHHHH----hcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCch
Q psy17528 197 NVKGTQTILALAK----RMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNS 272 (366)
Q Consensus 197 nv~~~~~ll~~a~----~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (366)
|+.++..+++.+. +..+..++|++||........ ....
T Consensus 107 n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~~~~~~~--------------------------------------~~~~ 148 (239)
T TIGR01831 107 NLDGFYNVIHPCTMPMIRARQGGRIITLASVSGVMGNR--------------------------------------GQVN 148 (239)
T ss_pred HhHHHHHHHHHHHHHHHhhcCCeEEEEEcchhhccCCC--------------------------------------CCcc
Confidence 9999988887642 112446899999975432110 0157
Q ss_pred HHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccH
Q psy17528 273 YTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPG 347 (366)
Q Consensus 273 Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~v 347 (366)
|+.+|...+.+.+... .+++++.++|+.+.++..... . .......... ....+...
T Consensus 149 Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~-------~---~~~~~~~~~~---------~~~~~~~~ 209 (239)
T TIGR01831 149 YSAAKAGLIGATKALAVELAKRKITVNCIAPGLIDTEMLAEV-------E---HDLDEALKTV---------PMNRMGQP 209 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHhHhCeEEEEEEEccCccccchhh-------h---HHHHHHHhcC---------CCCCCCCH
Confidence 9999998887776654 689999999999987643211 0 0011111111 12235677
Q ss_pred HHHHHHHHHHHHhh
Q psy17528 348 DRVINAMAALAWYF 361 (366)
Q Consensus 348 dDva~ai~~~~~~~ 361 (366)
+|+++++++++..+
T Consensus 210 ~~va~~~~~l~~~~ 223 (239)
T TIGR01831 210 AEVASLAGFLMSDG 223 (239)
T ss_pred HHHHHHHHHHcCch
Confidence 99999999988754
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.7e-13 Score=125.32 Aligned_cols=211 Identities=18% Similarity=0.162 Sum_probs=136.9
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||.+++++|++.| ++|++++|+... .+.+.+.
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~---~~~~~~~---------------------------- 49 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEG---ARVAVLERSAEK---LASLRQR---------------------------- 49 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHH----------------------------
Confidence 568999999999999999999999998 789999987431 1111110
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------h-h--
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------D-E-- 188 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~-~-- 188 (366)
...++.++.+|+.+.+ .+..+++ .+|++||+||.... . .
T Consensus 50 ------------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~ 105 (263)
T PRK06200 50 ------------------FGDHVLVVEGDVTSYA------DNQRAVDQTVDAFGKLDCFVGNAGIWDYNTSLVDIPAETL 105 (263)
T ss_pred ------------------hCCcceEEEccCCCHH------HHHHHHHHHHHhcCCCCEEEECCCCcccCCCcccCChhHH
Confidence 1235778899999876 4554443 57999999996421 1 1
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHhc--CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhc
Q psy17528 189 --HIRTAYNINVKGTQTILALAKRM--KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEH 264 (366)
Q Consensus 189 --~~~~~~~~nv~~~~~ll~~a~~~--~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 264 (366)
.++..+++|+.+...+++.+.+. ....++|++||...+....
T Consensus 106 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~---------------------------------- 151 (263)
T PRK06200 106 DTAFDEIFNVNVKGYLLGAKAALPALKASGGSMIFTLSNSSFYPGG---------------------------------- 151 (263)
T ss_pred HHHHHHHeeeccHhHHHHHHHHHHHHHhcCCEEEEECChhhcCCCC----------------------------------
Confidence 14567788999988888776532 1225799999976542211
Q ss_pred ccCCCCchHHHHHHHHHHHHHHhc----CCCCEEEEecCccccCCCCCCCc-ccc-ccchHHHHHHHHhcCcceeecCCC
Q psy17528 265 IIGGKPNSYTLTKATAEDLVRQVG----HELPICVLRPSIVFPTLQEPMPL-WIK-GFNGVMALALGAGTGLIRVVQTDP 338 (366)
Q Consensus 265 ~~~~~~~~Y~~sK~~~E~~l~~~~----~gl~~~ilRp~~v~G~~~~~~~~-~~~-~~~~~~~~~~~~~~g~~~~l~~~~ 338 (366)
....|+.+|...+.+++... .++.+..+.||.|..+....... ... ........ ...... .
T Consensus 152 ----~~~~Y~~sK~a~~~~~~~la~el~~~Irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~-~~~~~~--------~ 218 (263)
T PRK06200 152 ----GGPLYTASKHAVVGLVRQLAYELAPKIRVNGVAPGGTVTDLRGPASLGQGETSISDSPGL-ADMIAA--------I 218 (263)
T ss_pred ----CCchhHHHHHHHHHHHHHHHHHHhcCcEEEEEeCCccccCCcCccccCCCCcccccccch-hHHhhc--------C
Confidence 01579999999999998766 46999999999997764321100 000 00000000 111111 0
Q ss_pred CcccCcccHHHHHHHHHHHHHhh
Q psy17528 339 NISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 339 ~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
....-+...+|++++++.++...
T Consensus 219 ~p~~r~~~~~eva~~~~fl~s~~ 241 (263)
T PRK06200 219 TPLQFAPQPEDHTGPYVLLASRR 241 (263)
T ss_pred CCCCCCCCHHHHhhhhhheeccc
Confidence 11234777899999999887644
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.4e-13 Score=121.49 Aligned_cols=164 Identities=17% Similarity=0.175 Sum_probs=116.6
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+++++||||+|+||++++++|++.| ++|++++|+..... .+.+
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~G---~~V~~~~r~~~~~~---~~~~------------------------------- 43 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLERG---WQVTATVRGPQQDT---ALQA------------------------------- 43 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhCC---CEEEEEeCCCcchH---HHHh-------------------------------
Confidence 4689999999999999999999998 79999999864321 1110
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-----CcCEEEEcCcccCh---------hhhHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-----QTTIIFHIAATVRF---------DEHIRTA 193 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-----~~d~Vih~a~~~~~---------~~~~~~~ 193 (366)
..++.++.+|+.+.+ .+.++++ ++|+|||+||.... .......
T Consensus 44 -----------------~~~~~~~~~D~~d~~------~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~ 100 (225)
T PRK08177 44 -----------------LPGVHIEKLDMNDPA------SLDQLLQRLQGQRFDLLFVNAGISGPAHQSAADATAAEIGQL 100 (225)
T ss_pred -----------------ccccceEEcCCCCHH------HHHHHHHHhhcCCCCEEEEcCcccCCCCCCcccCCHHHHhhh
Confidence 024567788999876 5555544 58999999987421 2345567
Q ss_pred HHHHHHHHHHHHHHHHhc--CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCc
Q psy17528 194 YNINVKGTQTILALAKRM--KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPN 271 (366)
Q Consensus 194 ~~~nv~~~~~ll~~a~~~--~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (366)
+++|+.++..+++.+.+. .+...++++||.+......+ . ....
T Consensus 101 ~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss~~g~~~~~~------~-----------------------------~~~~ 145 (225)
T PRK08177 101 FLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQLGSVELPD------G-----------------------------GEMP 145 (225)
T ss_pred eeeeeeHHHHHHHHHHHhhhhcCCEEEEEccCccccccCC------C-----------------------------CCcc
Confidence 788999988888876542 12257888888654311100 0 0014
Q ss_pred hHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCC
Q psy17528 272 SYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQ 306 (366)
Q Consensus 272 ~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~ 306 (366)
.|+.+|...+.+++.+. +++.+..++||.+-.+..
T Consensus 146 ~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~i~PG~i~t~~~ 185 (225)
T PRK08177 146 LYKASKAALNSMTRSFVAELGEPTLTVLSMHPGWVKTDMG 185 (225)
T ss_pred chHHHHHHHHHHHHHHHHHhhcCCeEEEEEcCCceecCCC
Confidence 69999999999998765 578999999999977654
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.4e-12 Score=120.15 Aligned_cols=209 Identities=14% Similarity=0.105 Sum_probs=132.5
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
++++||||+|+||.+++++|++.| .+|++++|+.+. .+.+.+ .++..
T Consensus 1 k~vlItGas~giG~~la~~la~~G---~~vv~~~r~~~~---~~~~~~--------~~~~~------------------- 47 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQG---AELFLTDRDADG---LAQTVA--------DARAL------------------- 47 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHH--------HHHhc-------------------
Confidence 479999999999999999999998 788888886431 111111 11110
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIRTAY 194 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~~~~ 194 (366)
....+.++.+|+.+.+ .+..+++ ++|+|||++|... ....++..+
T Consensus 48 ---------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~ 106 (272)
T PRK07832 48 ---------------GGTVPEHRALDISDYD------AVAAFAADIHAAHGSMDVVMNIAGISAWGTVDRLTHEQWRRMV 106 (272)
T ss_pred ---------------CCCcceEEEeeCCCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHH
Confidence 1123456789999876 4444433 5799999999642 223457788
Q ss_pred HHHHHHHHHHHHHHHh----cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCC
Q psy17528 195 NINVKGTQTILALAKR----MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKP 270 (366)
Q Consensus 195 ~~nv~~~~~ll~~a~~----~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (366)
++|+.++..+++.+.. .+...++|++||....... | ..
T Consensus 107 ~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~~~----------~----------------------------~~ 148 (272)
T PRK07832 107 DVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGLVAL----------P----------------------------WH 148 (272)
T ss_pred HHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccccCCC----------C----------------------------CC
Confidence 9999999999887643 1223589999997543111 0 11
Q ss_pred chHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcc
Q psy17528 271 NSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVV 345 (366)
Q Consensus 271 ~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v 345 (366)
..|+.+|...+.+.+... +++++++++||.+.++....... .+............. ......+
T Consensus 149 ~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~Pg~v~t~~~~~~~~--~~~~~~~~~~~~~~~----------~~~~~~~ 216 (272)
T PRK07832 149 AAYSASKFGLRGLSEVLRFDLARHGIGVSVVVPGAVKTPLVNTVEI--AGVDREDPRVQKWVD----------RFRGHAV 216 (272)
T ss_pred cchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhcccc--cccCcchhhHHHHHH----------hcccCCC
Confidence 579999997777665444 68999999999999875432100 000000000000000 0112357
Q ss_pred cHHHHHHHHHHHHHhh
Q psy17528 346 PGDRVINAMAALAWYF 361 (366)
Q Consensus 346 ~vdDva~ai~~~~~~~ 361 (366)
..+|+|++++.++...
T Consensus 217 ~~~~vA~~~~~~~~~~ 232 (272)
T PRK07832 217 TPEKAAEKILAGVEKN 232 (272)
T ss_pred CHHHHHHHHHHHHhcC
Confidence 8999999999988643
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.1e-12 Score=133.39 Aligned_cols=206 Identities=14% Similarity=0.149 Sum_probs=140.4
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
...+++++||||+|.||.+++++|.+.| .+|+++.|+... .+.+.+.
T Consensus 266 ~~~~k~~lItGas~gIG~~~a~~l~~~G---~~V~~~~r~~~~---~~~~~~~--------------------------- 312 (520)
T PRK06484 266 AESPRVVAITGGARGIGRAVADRFAAAG---DRLLIIDRDAEG---AKKLAEA--------------------------- 312 (520)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHH---------------------------
Confidence 4468999999999999999999999998 799999987421 1111110
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh--------hhh
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF--------DEH 189 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~--------~~~ 189 (366)
...++..+.+|+++.+ .+..+++ .+|++|||||.... ...
T Consensus 313 -------------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~ 367 (520)
T PRK06484 313 -------------------LGDEHLSVQADITDEA------AVESAFAQIQARWGRLDVLVNNAGIAEVFKPSLEQSAED 367 (520)
T ss_pred -------------------hCCceeEEEccCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCcCCCCChhhCCHHH
Confidence 1134567899999976 5555443 47999999997421 235
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 190 IRTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 190 ~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
++..+++|+.++..+.+.+... ....+||++||........
T Consensus 368 ~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------------------------------------- 409 (520)
T PRK06484 368 FTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLLALP-------------------------------------- 409 (520)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcCCCC--------------------------------------
Confidence 6778999999999988876543 2335899999986542210
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
....|+.+|+..+.+++... +|++++++.||.|.++...... . .. ........+.. ....
T Consensus 410 ~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~---~-~~--~~~~~~~~~~~---------~~~~ 474 (520)
T PRK06484 410 PRNAYCASKAAVTMLSRSLACEWAPAGIRVNTVAPGYIETPAVLALK---A-SG--RADFDSIRRRI---------PLGR 474 (520)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCchhhhhc---c-cc--HHHHHHHHhcC---------CCCC
Confidence 11679999999999888765 5899999999999876432110 0 00 00011111111 1123
Q ss_pred cccHHHHHHHHHHHHHhh
Q psy17528 344 VVPGDRVINAMAALAWYF 361 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~~ 361 (366)
+...+|+|++++.++...
T Consensus 475 ~~~~~dia~~~~~l~s~~ 492 (520)
T PRK06484 475 LGDPEEVAEAIAFLASPA 492 (520)
T ss_pred CcCHHHHHHHHHHHhCcc
Confidence 567899999999988643
|
|
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-11 Score=116.56 Aligned_cols=209 Identities=14% Similarity=0.106 Sum_probs=133.5
Q ss_pred cCCCCeEEEeCCcc--hHHHHHHHHHHHhCCCccEEEEEEcCCCCc-----CHHHHHHHHhhhhhhhhhhhcCCCCCCcc
Q psy17528 45 FYKDQTIFITGATG--FLGSLLVEKLLRCCPQIRKIILLIRTRGST-----SITQRVYNYFNDAVFDRMRLECPNYADKV 117 (366)
Q Consensus 45 ~~~~~~ilItGatG--~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 117 (366)
.+++++|+||||+| .||.+++++|++.| .+|++..|+.... ...+...+. -+.+.
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G---~~vi~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---------- 64 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAG---ADIFFTYWTAYDKEMPWGVDQDEQIQL-----QEELL---------- 64 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCC---CeEEEEecccccccccccccHHHHHHH-----HHHHH----------
Confidence 46789999999995 79999999999998 7787775432100 001111110 00111
Q ss_pred ccccccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh----
Q psy17528 118 DIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF---- 186 (366)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~---- 186 (366)
....++.++.+|+.+.+ ++.+++. .+|++||+||....
T Consensus 65 -------------------------~~g~~~~~~~~D~~~~~------~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~ 113 (256)
T PRK12859 65 -------------------------KNGVKVSSMELDLTQND------APKELLNKVTEQLGYPHILVNNAAYSTNNDFS 113 (256)
T ss_pred -------------------------hcCCeEEEEEcCCCCHH------HHHHHHHHHHHHcCCCcEEEECCCCCCCCChh
Confidence 11346788999999976 5665553 47999999996431
Q ss_pred ---hhhHHHHHHHHHHHHHHHHHHHHh-c--CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHh
Q psy17528 187 ---DEHIRTAYNINVKGTQTILALAKR-M--KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIAL 260 (366)
Q Consensus 187 ---~~~~~~~~~~nv~~~~~ll~~a~~-~--~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~ 260 (366)
...++..+++|+.+...+.+.+.+ + ....+||++||.......
T Consensus 114 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~------------------------------- 162 (256)
T PRK12859 114 NLTAEELDKHYMVNVRATTLLSSQFARGFDKKSGGRIINMTSGQFQGPM------------------------------- 162 (256)
T ss_pred hCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEEcccccCCCC-------------------------------
Confidence 234566889999988877544322 1 134589999997643111
Q ss_pred hhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeec
Q psy17528 261 LNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQ 335 (366)
Q Consensus 261 ~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~ 335 (366)
+....|+.+|...+.+.+... +++.++.++||.+-.+... . .........
T Consensus 163 -------~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~PG~i~t~~~~---------~---~~~~~~~~~------ 217 (256)
T PRK12859 163 -------VGELAYAATKGAIDALTSSLAAEVAHLGITVNAINPGPTDTGWMT---------E---EIKQGLLPM------ 217 (256)
T ss_pred -------CCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEEccccCCCCC---------H---HHHHHHHhc------
Confidence 012689999999999987765 6899999999998765321 0 011111110
Q ss_pred CCCCcccCcccHHHHHHHHHHHHHhh
Q psy17528 336 TDPNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 336 ~~~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
.....+...+|++++++.++...
T Consensus 218 ---~~~~~~~~~~d~a~~~~~l~s~~ 240 (256)
T PRK12859 218 ---FPFGRIGEPKDAARLIKFLASEE 240 (256)
T ss_pred ---CCCCCCcCHHHHHHHHHHHhCcc
Confidence 01223556899999999887543
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4e-12 Score=119.93 Aligned_cols=208 Identities=12% Similarity=0.051 Sum_probs=135.5
Q ss_pred CCCCeEEEeCCc--chHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 46 YKDQTIFITGAT--GFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 46 ~~~~~ilItGat--G~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
+++|+++||||+ +.||.+++++|.+.| ++|++..|+.... +++.+... .
T Consensus 5 ~~~k~~lItGa~~s~GIG~aia~~la~~G---~~v~~~~r~~~~~---~~~~~~~~---------~-------------- 55 (257)
T PRK08594 5 LEGKTYVVMGVANKRSIAWGIARSLHNAG---AKLVFTYAGERLE---KEVRELAD---------T-------------- 55 (257)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCC---CEEEEecCcccch---HHHHHHHH---------H--------------
Confidence 568999999997 899999999999998 7888888753221 22222111 0
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh----------
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF---------- 186 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~---------- 186 (366)
.. ..++.++.+|+.+.+ .+..+++ .+|++|||||....
T Consensus 56 -----------------~~--~~~~~~~~~Dv~d~~------~v~~~~~~~~~~~g~ld~lv~nag~~~~~~~~~~~~~~ 110 (257)
T PRK08594 56 -----------------LE--GQESLLLPCDVTSDE------EITACFETIKEEVGVIHGVAHCIAFANKEDLRGEFLET 110 (257)
T ss_pred -----------------cC--CCceEEEecCCCCHH------HHHHHHHHHHHhCCCccEEEECcccCCCCcCCCccccC
Confidence 11 246778899999986 5555443 47999999986421
Q ss_pred -hhhHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhc
Q psy17528 187 -DEHIRTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEH 264 (366)
Q Consensus 187 -~~~~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 264 (366)
...+...+++|+.+...+.+.+.+. ....++|++||....... |
T Consensus 111 ~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~----------~------------------------ 156 (257)
T PRK08594 111 SRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGGERVV----------Q------------------------ 156 (257)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCCccCC----------C------------------------
Confidence 1234567788999888777765542 123589999997543111 0
Q ss_pred ccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCC
Q psy17528 265 IIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPN 339 (366)
Q Consensus 265 ~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~ 339 (366)
....|+.+|...+.+.+... +|+.++.+.||.|-.+....... +. ......... .
T Consensus 157 ----~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~----~~---~~~~~~~~~---------~ 216 (257)
T PRK08594 157 ----NYNVMGVAKASLEASVKYLANDLGKDGIRVNAISAGPIRTLSAKGVGG----FN---SILKEIEER---------A 216 (257)
T ss_pred ----CCchhHHHHHHHHHHHHHHHHHhhhcCCEEeeeecCcccCHhHhhhcc----cc---HHHHHHhhc---------C
Confidence 01579999999999887765 68999999999987653211000 00 000010100 1
Q ss_pred cccCcccHHHHHHHHHHHHHhh
Q psy17528 340 ISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 340 ~~~~~v~vdDva~ai~~~~~~~ 361 (366)
....+...+|+++++++++...
T Consensus 217 p~~r~~~p~~va~~~~~l~s~~ 238 (257)
T PRK08594 217 PLRRTTTQEEVGDTAAFLFSDL 238 (257)
T ss_pred CccccCCHHHHHHHHHHHcCcc
Confidence 1223577899999999887643
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.9e-12 Score=119.89 Aligned_cols=206 Identities=15% Similarity=0.043 Sum_probs=135.8
Q ss_pred CCCCeEEEeCCc--chHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 46 YKDQTIFITGAT--GFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 46 ~~~~~ilItGat--G~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
+++|+++||||+ +.||.+++++|++.| .+|++..|+... .+.+.+... +
T Consensus 8 ~~~k~~lItGas~g~GIG~a~a~~la~~G---~~v~l~~r~~~~---~~~~~~~~~---------~-------------- 58 (258)
T PRK07533 8 LAGKRGLVVGIANEQSIAWGCARAFRALG---AELAVTYLNDKA---RPYVEPLAE---------E-------------- 58 (258)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcC---CEEEEEeCChhh---HHHHHHHHH---------h--------------
Confidence 468999999998 489999999999998 789888886421 112222110 0
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-----------
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR----------- 185 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~----------- 185 (366)
. ....++.+|+++.+ ++..+++ .+|++|||||...
T Consensus 59 -----------------~----~~~~~~~~D~~~~~------~v~~~~~~~~~~~g~ld~lv~nAg~~~~~~~~~~~~~~ 111 (258)
T PRK07533 59 -----------------L----DAPIFLPLDVREPG------QLEAVFARIAEEWGRLDFLLHSIAFAPKEDLHGRVVDC 111 (258)
T ss_pred -----------------h----ccceEEecCcCCHH------HHHHHHHHHHHHcCCCCEEEEcCccCCcccccCCcccC
Confidence 1 12357889999876 5555442 5799999999642
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhc
Q psy17528 186 FDEHIRTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEH 264 (366)
Q Consensus 186 ~~~~~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 264 (366)
....++..+++|+.+...+.+.+... ..-.+++++||....... |
T Consensus 112 ~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~~~~~~----------~------------------------ 157 (258)
T PRK07533 112 SREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYGAEKVV----------E------------------------ 157 (258)
T ss_pred CHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEeccccccCC----------c------------------------
Confidence 12356778999999999988876542 222478999886432110 0
Q ss_pred ccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCC
Q psy17528 265 IIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPN 339 (366)
Q Consensus 265 ~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~ 339 (366)
....|+.+|...+.+.+... +++.+..+.||.|-.+...... .+ .......... .
T Consensus 158 ----~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~v~PG~v~T~~~~~~~----~~---~~~~~~~~~~---------~ 217 (258)
T PRK07533 158 ----NYNLMGPVKAALESSVRYLAAELGPKGIRVHAISPGPLKTRAASGID----DF---DALLEDAAER---------A 217 (258)
T ss_pred ----cchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcCChhhhccC----Cc---HHHHHHHHhc---------C
Confidence 01579999999988887765 6899999999998765321110 00 1111111111 1
Q ss_pred cccCcccHHHHHHHHHHHHHhh
Q psy17528 340 ISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 340 ~~~~~v~vdDva~ai~~~~~~~ 361 (366)
....+...+|++++++.++...
T Consensus 218 p~~r~~~p~dva~~~~~L~s~~ 239 (258)
T PRK07533 218 PLRRLVDIDDVGAVAAFLASDA 239 (258)
T ss_pred CcCCCCCHHHHHHHHHHHhChh
Confidence 1223678899999999988653
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.5e-12 Score=134.98 Aligned_cols=169 Identities=14% Similarity=0.112 Sum_probs=123.6
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
..+++++++||||+|+||.+++++|.+.| ++|++++|+... .+.+.+.. +.
T Consensus 311 ~~~~~~~~lv~G~s~giG~~~a~~l~~~G---~~v~~~~r~~~~---~~~~~~~~--------~~--------------- 361 (582)
T PRK05855 311 GPFSGKLVVVTGAGSGIGRETALAFAREG---AEVVASDIDEAA---AERTAELI--------RA--------------- 361 (582)
T ss_pred ccCCCCEEEEECCcCHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHHH--------Hh---------------
Confidence 44567899999999999999999999998 789999997432 11121111 11
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhh
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEH 189 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~ 189 (366)
...++.++.+|+++++ .+.++++ .+|++|||||.... ...
T Consensus 362 --------------------~~~~~~~~~~Dv~~~~------~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~ 415 (582)
T PRK05855 362 --------------------AGAVAHAYRVDVSDAD------AMEAFAEWVRAEHGVPDIVVNNAGIGMAGGFLDTSAED 415 (582)
T ss_pred --------------------cCCeEEEEEcCCCCHH------HHHHHHHHHHHhcCCCcEEEECCccCCCCCcccCCHHH
Confidence 1246788999999987 5665554 47999999997531 245
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcc
Q psy17528 190 IRTAYNINVKGTQTILALAKR----MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHI 265 (366)
Q Consensus 190 ~~~~~~~nv~~~~~ll~~a~~----~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (366)
++..+++|+.++.++.+++.. .+...+||++||..++....
T Consensus 416 ~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~----------------------------------- 460 (582)
T PRK05855 416 WDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYAPSR----------------------------------- 460 (582)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccCCC-----------------------------------
Confidence 677888999999888876532 22235899999987664321
Q ss_pred cCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCC
Q psy17528 266 IGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTL 305 (366)
Q Consensus 266 ~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~ 305 (366)
....|+.+|...+.+.+... +|+.++++.||.|-.+.
T Consensus 461 ---~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~ 502 (582)
T PRK05855 461 ---SLPAYATSKAAVLMLSECLRAELAAAGIGVTAICPGFVDTNI 502 (582)
T ss_pred ---CCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCCCcccc
Confidence 01689999998888876654 68999999999987653
|
|
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.2e-12 Score=120.82 Aligned_cols=207 Identities=15% Similarity=0.056 Sum_probs=133.2
Q ss_pred cCCCCeEEEeCC--cchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccc
Q psy17528 45 FYKDQTIFITGA--TGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGIT 122 (366)
Q Consensus 45 ~~~~~~ilItGa--tG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (366)
++++++++|||| ++.||.++++.|++.| .+|++..|... ..+.+.++. .+
T Consensus 3 ~~~~k~~lITGa~~~~GIG~a~a~~l~~~G---~~v~~~~~~~~---~~~~~~~~~---------~~------------- 54 (261)
T PRK08690 3 FLQGKKILITGMISERSIAYGIAKACREQG---AELAFTYVVDK---LEERVRKMA---------AE------------- 54 (261)
T ss_pred ccCCcEEEEECCCCCCcHHHHHHHHHHHCC---CEEEEEcCcHH---HHHHHHHHH---------hc-------------
Confidence 467899999997 6799999999999998 78888766421 112222210 00
Q ss_pred cccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh--------h
Q psy17528 123 HRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF--------D 187 (366)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~--------~ 187 (366)
. .....+.+|+.+.+ ++..+++ .+|++|||||.... .
T Consensus 55 ------------------~----~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~ 106 (261)
T PRK08690 55 ------------------L----DSELVFRCDVASDD------EINQVFADLGKHWDGLDGLVHSIGFAPKEALSGDFLD 106 (261)
T ss_pred ------------------c----CCceEEECCCCCHH------HHHHHHHHHHHHhCCCcEEEECCccCCccccccchhh
Confidence 0 12346889999987 6665553 58999999997531 1
Q ss_pred ----hhHHHHHHHHHHHHHHHHHHHHhc--CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhh
Q psy17528 188 ----EHIRTAYNINVKGTQTILALAKRM--KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALL 261 (366)
Q Consensus 188 ----~~~~~~~~~nv~~~~~ll~~a~~~--~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~ 261 (366)
..++..+++|+.+...+.+.+... ....++|++||....... |
T Consensus 107 ~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~~g~Iv~iss~~~~~~~----------~--------------------- 155 (261)
T PRK08690 107 SISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGAVRAI----------P--------------------- 155 (261)
T ss_pred hcCHHHHHHHHHhchHHHHHHHHHHHHHhhhcCcEEEEEcccccccCC----------C---------------------
Confidence 234556788988887776654431 122579999987543111 0
Q ss_pred hhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecC
Q psy17528 262 NEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQT 336 (366)
Q Consensus 262 ~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~ 336 (366)
....|+.+|...+.+.+... +|+.++.+.||.|-.+... .+ .............
T Consensus 156 -------~~~~Y~asKaal~~l~~~la~e~~~~gIrVn~i~PG~v~T~~~~---~~----~~~~~~~~~~~~~------- 214 (261)
T PRK08690 156 -------NYNVMGMAKASLEAGIRFTAACLGKEGIRCNGISAGPIKTLAAS---GI----ADFGKLLGHVAAH------- 214 (261)
T ss_pred -------CcccchhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccchhhh---cC----CchHHHHHHHhhc-------
Confidence 11679999999998877654 7899999999999765321 11 0001111111111
Q ss_pred CCCcccCcccHHHHHHHHHHHHHhh
Q psy17528 337 DPNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 337 ~~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
.....+...+|+|++++.++...
T Consensus 215 --~p~~r~~~peevA~~v~~l~s~~ 237 (261)
T PRK08690 215 --NPLRRNVTIEEVGNTAAFLLSDL 237 (261)
T ss_pred --CCCCCCCCHHHHHHHHHHHhCcc
Confidence 11234678899999999988754
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.2e-12 Score=121.00 Aligned_cols=209 Identities=9% Similarity=0.035 Sum_probs=137.0
Q ss_pred cccCCCCeEEEeCCc--chHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccc
Q psy17528 43 QEFYKDQTIFITGAT--GFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIG 120 (366)
Q Consensus 43 ~~~~~~~~ilItGat--G~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (366)
...+++|+++||||+ +.||.++++.|++.| .+|++..|+.. ..+++.++...
T Consensus 5 ~~~~~~k~~lItGas~~~GIG~aia~~la~~G---~~V~l~~r~~~---~~~~~~~l~~~-------------------- 58 (272)
T PRK08159 5 SGLMAGKRGLILGVANNRSIAWGIAKACRAAG---AELAFTYQGDA---LKKRVEPLAAE-------------------- 58 (272)
T ss_pred cccccCCEEEEECCCCCCcHHHHHHHHHHHCC---CEEEEEcCchH---HHHHHHHHHHh--------------------
Confidence 345678999999997 799999999999999 78888777521 12222221110
Q ss_pred cccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC--------
Q psy17528 121 ITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------- 185 (366)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------- 185 (366)
. .....+.+|+.+.+ ++..+++ .+|++|||||...
T Consensus 59 --------------------~----~~~~~~~~Dl~~~~------~v~~~~~~~~~~~g~iD~lv~nAG~~~~~~~~~~~ 108 (272)
T PRK08159 59 --------------------L----GAFVAGHCDVTDEA------SIDAVFETLEKKWGKLDFVVHAIGFSDKDELTGRY 108 (272)
T ss_pred --------------------c----CCceEEecCCCCHH------HHHHHHHHHHHhcCCCcEEEECCcccCccccccCc
Confidence 1 12446889999876 5665543 5799999999642
Q ss_pred ---hhhhHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhh
Q psy17528 186 ---FDEHIRTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALL 261 (366)
Q Consensus 186 ---~~~~~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~ 261 (366)
....++..+++|+.++..+++.+.+. ....++|++||...... .|
T Consensus 109 ~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~~----------~p--------------------- 157 (272)
T PRK08159 109 VDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGAEKV----------MP--------------------- 157 (272)
T ss_pred ccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEeccccccC----------CC---------------------
Confidence 12356778899999999998876653 22358999998643211 01
Q ss_pred hhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecC
Q psy17528 262 NEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQT 336 (366)
Q Consensus 262 ~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~ 336 (366)
....|+.+|...+.+.+... +++.++.+.||.|..+.....+. +. ......... .
T Consensus 158 -------~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~----~~----~~~~~~~~~---~-- 217 (272)
T PRK08159 158 -------HYNVMGVAKAALEASVKYLAVDLGPKNIRVNAISAGPIKTLAASGIGD----FR----YILKWNEYN---A-- 217 (272)
T ss_pred -------cchhhhhHHHHHHHHHHHHHHHhcccCeEEEEeecCCcCCHHHhcCCc----ch----HHHHHHHhC---C--
Confidence 01579999999988887665 68999999999987642211100 00 011111100 0
Q ss_pred CCCcccCcccHHHHHHHHHHHHHhh
Q psy17528 337 DPNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 337 ~~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
...-+...+|+|++++.++...
T Consensus 218 ---p~~r~~~peevA~~~~~L~s~~ 239 (272)
T PRK08159 218 ---PLRRTVTIEEVGDSALYLLSDL 239 (272)
T ss_pred ---cccccCCHHHHHHHHHHHhCcc
Confidence 1123577899999999988643
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.9e-12 Score=117.31 Aligned_cols=167 Identities=18% Similarity=0.182 Sum_probs=119.0
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++|||++|.||.++++.|++.| .+|++++|+... .+++.+. +..
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G---~~V~~~~r~~~~---~~~~~~~--------l~~----------------- 53 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEG---CHLHLVARDADA---LEALAAD--------LRA----------------- 53 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcC---CEEEEEeCCHHH---HHHHHHH--------HHh-----------------
Confidence 467999999999999999999999998 789999997431 1111111 111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh---CcCEEEEcCcccC-------hhhhHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS---QTTIIFHIAATVR-------FDEHIRTAYN 195 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~---~~d~Vih~a~~~~-------~~~~~~~~~~ 195 (366)
....++.++.+|+++.+ .+..+++ .+|++|||+|... ....+...++
T Consensus 54 -----------------~~~~~~~~~~~D~~~~~------~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~ 110 (259)
T PRK06125 54 -----------------AHGVDVAVHALDLSSPE------AREQLAAEAGDIDILVNNAGAIPGGGLDDVDDAAWRAGWE 110 (259)
T ss_pred -----------------hcCCceEEEEecCCCHH------HHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHH
Confidence 01246788899999876 5665554 6899999999642 1235677889
Q ss_pred HHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCch
Q psy17528 196 INVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNS 272 (366)
Q Consensus 196 ~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (366)
+|+.+...+.+.+.+. .+..++|++||....... .. ...
T Consensus 111 ~n~~~~~~~~~~~~~~~~~~~~g~iv~iss~~~~~~~---------~~-----------------------------~~~ 152 (259)
T PRK06125 111 LKVFGYIDLTRLAYPRMKARGSGVIVNVIGAAGENPD---------AD-----------------------------YIC 152 (259)
T ss_pred HhhHHHHHHHHHHHHHHHHcCCcEEEEecCccccCCC---------CC-----------------------------chH
Confidence 9999988887765321 133579999886432110 00 156
Q ss_pred HHHHHHHHHHHHHHhc-----CCCCEEEEecCccccC
Q psy17528 273 YTLTKATAEDLVRQVG-----HELPICVLRPSIVFPT 304 (366)
Q Consensus 273 Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~ 304 (366)
|..+|...+.+.+... ++++++.+.||.+..+
T Consensus 153 y~ask~al~~~~~~la~e~~~~gi~v~~i~PG~v~t~ 189 (259)
T PRK06125 153 GSAGNAALMAFTRALGGKSLDDGVRVVGVNPGPVATD 189 (259)
T ss_pred hHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccH
Confidence 8999999988887754 6899999999998775
|
|
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-11 Score=118.68 Aligned_cols=209 Identities=12% Similarity=0.080 Sum_probs=133.5
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCc---CHHHHHHHHhhhhhhhhhhhcCCCCCCcccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGST---SITQRVYNYFNDAVFDRMRLECPNYADKVDIGI 121 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (366)
.+++++++||||++.||.+++++|++.| .+|++++|+.... ...+++.+.. +.+.
T Consensus 3 ~l~~k~~lITGas~GIG~aia~~la~~G---~~vii~~~~~~~~~~~~~~~~~~~~~-----~~l~-------------- 60 (286)
T PRK07791 3 LLDGRVVIVTGAGGGIGRAHALAFAAEG---ARVVVNDIGVGLDGSASGGSAAQAVV-----DEIV-------------- 60 (286)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEeeCCccccccccchhHHHHHH-----HHHH--------------
Confidence 4678999999999999999999999998 7888887764110 0001111110 0111
Q ss_pred ccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH-------hCcCEEEEcCcccC-------hh
Q psy17528 122 THRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI-------SQTTIIFHIAATVR-------FD 187 (366)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~-------~~~d~Vih~a~~~~-------~~ 187 (366)
....++.++.+|+++.+ ++..++ ..+|++|||||... ..
T Consensus 61 ---------------------~~~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~id~lv~nAG~~~~~~~~~~~~ 113 (286)
T PRK07791 61 ---------------------AAGGEAVANGDDIADWD------GAANLVDAAVETFGGLDVLVNNAGILRDRMIANMSE 113 (286)
T ss_pred ---------------------hcCCceEEEeCCCCCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCH
Confidence 11245778899999976 555444 25799999999743 12
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh----cC-----CCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHH
Q psy17528 188 EHIRTAYNINVKGTQTILALAKR----MK-----GLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEI 258 (366)
Q Consensus 188 ~~~~~~~~~nv~~~~~ll~~a~~----~~-----~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~ 258 (366)
..++..+++|+.++..+.+++.+ .. ...+||++||.......
T Consensus 114 ~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~----------------------------- 164 (286)
T PRK07791 114 EEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGAGLQGS----------------------------- 164 (286)
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCchhhCcCC-----------------------------
Confidence 45677899999998888776542 10 02489999997543211
Q ss_pred HhhhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCccee
Q psy17528 259 ALLNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRV 333 (366)
Q Consensus 259 ~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 333 (366)
+....|+.+|...+.+.+... +|+.++.|.|+ +..+... ..........
T Consensus 165 ---------~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~Pg-~~T~~~~-------------~~~~~~~~~~--- 218 (286)
T PRK07791 165 ---------VGQGNYSAAKAGIAALTLVAAAELGRYGVTVNAIAPA-ARTRMTE-------------TVFAEMMAKP--- 218 (286)
T ss_pred ---------CCchhhHHHHHHHHHHHHHHHHHHHHhCeEEEEECCC-CCCCcch-------------hhHHHHHhcC---
Confidence 011679999999998887755 68999999998 4222110 0011111100
Q ss_pred ecCCCCcccCcccHHHHHHHHHHHHHhh
Q psy17528 334 VQTDPNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 334 l~~~~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
+.....+...+|++++++.++...
T Consensus 219 ----~~~~~~~~~pedva~~~~~L~s~~ 242 (286)
T PRK07791 219 ----EEGEFDAMAPENVSPLVVWLGSAE 242 (286)
T ss_pred ----cccccCCCCHHHHHHHHHHHhCch
Confidence 011123567899999999987643
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.4e-12 Score=120.15 Aligned_cols=205 Identities=12% Similarity=0.039 Sum_probs=133.8
Q ss_pred CCCCeEEEeCCcc--hHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 46 YKDQTIFITGATG--FLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 46 ~~~~~ilItGatG--~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
+++|++|||||++ .||.+++++|++.| .+|++..|+.. ..+++.++.. .
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~G---a~V~~~~r~~~---~~~~~~~~~~---------~-------------- 55 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQG---AELAFTYQGEA---LGKRVKPLAE---------S-------------- 55 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCC---CEEEEecCchH---HHHHHHHHHH---------h--------------
Confidence 5689999999997 99999999999999 88888888632 1222222110 0
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh----------
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF---------- 186 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~---------- 186 (366)
. ....++.+|+++.+ ++..+++ .+|++|||||....
T Consensus 56 -----------------~----g~~~~~~~Dv~d~~------~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~ 108 (271)
T PRK06505 56 -----------------L----GSDFVLPCDVEDIA------SVDAVFEALEKKWGKLDFVVHAIGFSDKNELKGRYADT 108 (271)
T ss_pred -----------------c----CCceEEeCCCCCHH------HHHHHHHHHHHHhCCCCEEEECCccCCCccccCChhhc
Confidence 0 11246789999976 5555443 57999999996421
Q ss_pred -hhhHHHHHHHHHHHHHHHHHHHHh-cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhc
Q psy17528 187 -DEHIRTAYNINVKGTQTILALAKR-MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEH 264 (366)
Q Consensus 187 -~~~~~~~~~~nv~~~~~ll~~a~~-~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 264 (366)
...++..+++|+.++..+.+.+.+ +..-.++|++||....... |
T Consensus 109 ~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS~~~~~~~----------~------------------------ 154 (271)
T PRK06505 109 TRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTYGGSTRVM----------P------------------------ 154 (271)
T ss_pred CHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcCCCccccC----------C------------------------
Confidence 234567888999998888776543 2122589999987543110 0
Q ss_pred ccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCC
Q psy17528 265 IIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPN 339 (366)
Q Consensus 265 ~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~ 339 (366)
....|+.+|...+.+.+... +|+.++.|.||.|-.+..... ....... ...... .
T Consensus 155 ----~~~~Y~asKaAl~~l~r~la~el~~~gIrVn~v~PG~i~T~~~~~~-------~~~~~~~-~~~~~~---~----- 214 (271)
T PRK06505 155 ----NYNVMGVAKAALEASVRYLAADYGPQGIRVNAISAGPVRTLAGAGI-------GDARAIF-SYQQRN---S----- 214 (271)
T ss_pred ----ccchhhhhHHHHHHHHHHHHHHHhhcCeEEEEEecCCccccccccC-------cchHHHH-HHHhhc---C-----
Confidence 11579999999988887765 689999999999977532110 0000011 111111 0
Q ss_pred cccCcccHHHHHHHHHHHHHh
Q psy17528 340 ISMDVVPGDRVINAMAALAWY 360 (366)
Q Consensus 340 ~~~~~v~vdDva~ai~~~~~~ 360 (366)
...-+...+|+|++++.++..
T Consensus 215 p~~r~~~peeva~~~~fL~s~ 235 (271)
T PRK06505 215 PLRRTVTIDEVGGSALYLLSD 235 (271)
T ss_pred CccccCCHHHHHHHHHHHhCc
Confidence 012255689999999988764
|
|
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.9e-12 Score=109.52 Aligned_cols=164 Identities=18% Similarity=0.196 Sum_probs=116.3
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
++++||||+|+||.+++++|++.|. +.|+++.|+...........+. +.
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~g~--~~v~~~~r~~~~~~~~~~~~~~--------~~--------------------- 49 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAERGA--RHLVLLSRSGPDAPGAAELLAE--------LE--------------------- 49 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHhhC--CeEEEEeCCCCCCccHHHHHHH--------HH---------------------
Confidence 4799999999999999999999862 4788888875432211110011 10
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIRTAY 194 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~~~~ 194 (366)
....++.++.+|+.+.. .+..++. .+|.|||+++.... ...++..+
T Consensus 50 --------------~~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~ 109 (180)
T smart00822 50 --------------ALGAEVTVVACDVADRA------ALAAALAAIPARLGPLRGVIHAAGVLDDGLLANLTPERFAAVL 109 (180)
T ss_pred --------------hcCCeEEEEECCCCCHH------HHHHHHHHHHHHcCCeeEEEEccccCCccccccCCHHHHHHhh
Confidence 11246778899998865 5555443 46999999996431 13456788
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHH
Q psy17528 195 NINVKGTQTILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYT 274 (366)
Q Consensus 195 ~~nv~~~~~ll~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~ 274 (366)
+.|+.++..+++.+... +.++++++||....... .....|+
T Consensus 110 ~~n~~~~~~l~~~~~~~-~~~~ii~~ss~~~~~~~--------------------------------------~~~~~y~ 150 (180)
T smart00822 110 APKVDGAWNLHELTRDL-PLDFFVLFSSVAGVLGN--------------------------------------PGQANYA 150 (180)
T ss_pred chHhHHHHHHHHHhccC-CcceEEEEccHHHhcCC--------------------------------------CCchhhH
Confidence 99999999999998765 66789999997543111 0116799
Q ss_pred HHHHHHHHHHHHhc-CCCCEEEEecCccc
Q psy17528 275 LTKATAEDLVRQVG-HELPICVLRPSIVF 302 (366)
Q Consensus 275 ~sK~~~E~~l~~~~-~gl~~~ilRp~~v~ 302 (366)
.+|...+.+++... .+++++.+.|+.+-
T Consensus 151 ~sk~~~~~~~~~~~~~~~~~~~~~~g~~~ 179 (180)
T smart00822 151 AANAFLDALAAHRRARGLPATSINWGAWA 179 (180)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeecccc
Confidence 99999999997666 88999999888654
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.6e-12 Score=117.03 Aligned_cols=163 Identities=15% Similarity=0.124 Sum_probs=117.6
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
|++++||||+|+||++++++|++.| .+|++++|+.... +++..
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~G---~~v~~~~r~~~~~---~~~~~------------------------------- 43 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRADG---WRVIATARDAAAL---AALQA------------------------------- 43 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhCC---CEEEEEECCHHHH---HHHHh-------------------------------
Confidence 4689999999999999999999998 7899999874321 11110
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH---h--CcCEEEEcCcccC---------hhhhHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI---S--QTTIIFHIAATVR---------FDEHIRTA 193 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~---~--~~d~Vih~a~~~~---------~~~~~~~~ 193 (366)
..+.++.+|+.+.+ .+..++ . .+|+|||++|... ....++..
T Consensus 44 ------------------~~~~~~~~D~~~~~------~v~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~ 99 (222)
T PRK06953 44 ------------------LGAEALALDVADPA------SVAGLAWKLDGEALDAAVYVAGVYGPRTEGVEPITREDFDAV 99 (222)
T ss_pred ------------------ccceEEEecCCCHH------HHHHHHHHhcCCCCCEEEECCCcccCCCCCcccCCHHHHHHH
Confidence 13457899999986 555543 2 4899999999752 23456778
Q ss_pred HHHHHHHHHHHHHHHHhc--CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCc
Q psy17528 194 YNINVKGTQTILALAKRM--KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPN 271 (366)
Q Consensus 194 ~~~nv~~~~~ll~~a~~~--~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (366)
+++|+.++..+++.+.+. ....+++++||........+ . ....
T Consensus 100 ~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~---------~--------------------------~~~~ 144 (222)
T PRK06953 100 MHTNVLGPMQLLPILLPLVEAAGGVLAVLSSRMGSIGDAT---------G--------------------------TTGW 144 (222)
T ss_pred HhhhhhhHHHHHHHHHHhhhccCCeEEEEcCccccccccc---------C--------------------------CCcc
Confidence 999999999999887652 12347889988643211100 0 0014
Q ss_pred hHHHHHHHHHHHHHHhc---CCCCEEEEecCccccCCC
Q psy17528 272 SYTLTKATAEDLVRQVG---HELPICVLRPSIVFPTLQ 306 (366)
Q Consensus 272 ~Y~~sK~~~E~~l~~~~---~gl~~~ilRp~~v~G~~~ 306 (366)
.|+.+|...+.+++... .++.++.++||.+..+..
T Consensus 145 ~Y~~sK~a~~~~~~~~~~~~~~i~v~~v~Pg~i~t~~~ 182 (222)
T PRK06953 145 LYRASKAALNDALRAASLQARHATCIALHPGWVRTDMG 182 (222)
T ss_pred ccHHhHHHHHHHHHHHhhhccCcEEEEECCCeeecCCC
Confidence 69999999999998776 578899999999987643
|
|
| >KOG4288|consensus | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.1e-13 Score=121.29 Aligned_cols=213 Identities=15% Similarity=0.090 Sum_probs=153.8
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
-...++.|+.||.|+++++.....| ..|..+.|++.+.-
T Consensus 52 ~e~tlvlggnpfsgs~vlk~A~~vv---~svgilsen~~k~~-------------------------------------- 90 (283)
T KOG4288|consen 52 VEWTLVLGGNPFSGSEVLKNATNVV---HSVGILSENENKQT-------------------------------------- 90 (283)
T ss_pred HHHHhhhcCCCcchHHHHHHHHhhc---eeeeEeecccCcch--------------------------------------
Confidence 3568999999999999999999997 88999999864311
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILAL 207 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll~~ 207 (366)
.+++...+..+++|.-... -......+++.++-+++-.. +...+.++|-....+.+++
T Consensus 91 -------------l~sw~~~vswh~gnsfssn------~~k~~l~g~t~v~e~~ggfg---n~~~m~~ing~ani~a~ka 148 (283)
T KOG4288|consen 91 -------------LSSWPTYVSWHRGNSFSSN------PNKLKLSGPTFVYEMMGGFG---NIILMDRINGTANINAVKA 148 (283)
T ss_pred -------------hhCCCcccchhhccccccC------cchhhhcCCcccHHHhcCcc---chHHHHHhccHhhHHHHHH
Confidence 4456788888888887654 24555678888888877543 3344566677777777888
Q ss_pred HHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHHh
Q psy17528 208 AKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQV 287 (366)
Q Consensus 208 a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~ 287 (366)
+++. ++++|+|+|..-.. .+| -.+.+|..+|..+|..+...
T Consensus 149 a~~~-gv~~fvyISa~d~~-----------~~~---------------------------~i~rGY~~gKR~AE~Ell~~ 189 (283)
T KOG4288|consen 149 AAKA-GVPRFVYISAHDFG-----------LPP---------------------------LIPRGYIEGKREAEAELLKK 189 (283)
T ss_pred HHHc-CCceEEEEEhhhcC-----------CCC---------------------------ccchhhhccchHHHHHHHHh
Confidence 8887 99999999985321 011 11268999999999999887
Q ss_pred cCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCc---ceeecCCCCcccCcccHHHHHHHHHHHHHhhhhc
Q psy17528 288 GHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGL---IRVVQTDPNISMDVVPGDRVINAMAALAWYFLFS 364 (366)
Q Consensus 288 ~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~~~ 364 (366)
. +....+||||++||.+.- .+....+..+...+....+.. ...++.-+....+.+.+++||.+.+.++++|.+.
T Consensus 190 ~-~~rgiilRPGFiyg~R~v--~g~~~pL~~vg~pl~~~~~~a~k~~~kLp~lg~l~~ppvnve~VA~aal~ai~dp~f~ 266 (283)
T KOG4288|consen 190 F-RFRGIILRPGFIYGTRNV--GGIKSPLHTVGEPLEMVLKFALKPLNKLPLLGPLLAPPVNVESVALAALKAIEDPDFK 266 (283)
T ss_pred c-CCCceeeccceeeccccc--CcccccHHhhhhhHHHHHHhhhchhhcCcccccccCCCcCHHHHHHHHHHhccCCCcC
Confidence 6 688899999999999542 232222222233333333332 2334555678899999999999999999999876
Q ss_pred C
Q psy17528 365 C 365 (366)
Q Consensus 365 ~ 365 (366)
|
T Consensus 267 G 267 (283)
T KOG4288|consen 267 G 267 (283)
T ss_pred c
Confidence 5
|
|
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-11 Score=113.10 Aligned_cols=192 Identities=14% Similarity=0.145 Sum_probs=128.9
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
|+|+||||+|+||++++++|+++|.. ..|++..|+....
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~-~~v~~~~~~~~~~---------------------------------------- 39 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPD-ATVHATYRHHKPD---------------------------------------- 39 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCC-CEEEEEccCCccc----------------------------------------
Confidence 58999999999999999999998633 4566666643210
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH---hCcCEEEEcCcccCh-------------hhhHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI---SQTTIIFHIAATVRF-------------DEHIRT 192 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~---~~~d~Vih~a~~~~~-------------~~~~~~ 192 (366)
....++.++.+|+++.+ .+.++. .++|+||||||.... ...+..
T Consensus 40 --------------~~~~~~~~~~~Dls~~~------~~~~~~~~~~~id~li~~aG~~~~~~~~~~~~~~~~~~~~~~~ 99 (235)
T PRK09009 40 --------------FQHDNVQWHALDVTDEA------EIKQLSEQFTQLDWLINCVGMLHTQDKGPEKSLQALDADFFLQ 99 (235)
T ss_pred --------------cccCceEEEEecCCCHH------HHHHHHHhcCCCCEEEECCccccccccCcccccccCCHHHHHH
Confidence 01246788999999876 444443 478999999997531 023456
Q ss_pred HHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCC
Q psy17528 193 AYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGK 269 (366)
Q Consensus 193 ~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (366)
.+.+|+.+...+++.+.+. .+..+++++||........ .. ++
T Consensus 100 ~~~vn~~~~~~~~~~~~~~~~~~~~~~i~~iss~~~~~~~~-----~~-~~----------------------------- 144 (235)
T PRK09009 100 NITLNTLPSLLLAKHFTPKLKQSESAKFAVISAKVGSISDN-----RL-GG----------------------------- 144 (235)
T ss_pred HHHHHhHHHHHHHHHHHhhccccCCceEEEEeecccccccC-----CC-CC-----------------------------
Confidence 7888999988887766542 1335788888743211100 00 00
Q ss_pred CchHHHHHHHHHHHHHHhc-------CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 270 PNSYTLTKATAEDLVRQVG-------HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 270 ~~~Y~~sK~~~E~~l~~~~-------~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
...|+.+|+..+.+.+... .++.+..+.||.+.++..... ... ....
T Consensus 145 ~~~Y~asK~a~~~~~~~la~e~~~~~~~i~v~~v~PG~v~t~~~~~~-----------------~~~---------~~~~ 198 (235)
T PRK09009 145 WYSYRASKAALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTALSKPF-----------------QQN---------VPKG 198 (235)
T ss_pred cchhhhhHHHHHHHHHHHHHHhhcccCCeEEEEEcccceecCCCcch-----------------hhc---------cccC
Confidence 1579999999999887655 378889999999877643210 000 0112
Q ss_pred CcccHHHHHHHHHHHHHhhh
Q psy17528 343 DVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~~ 362 (366)
.+...+|+|++++.++....
T Consensus 199 ~~~~~~~~a~~~~~l~~~~~ 218 (235)
T PRK09009 199 KLFTPEYVAQCLLGIIANAT 218 (235)
T ss_pred CCCCHHHHHHHHHHHHHcCC
Confidence 35788999999999887753
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.5e-12 Score=119.19 Aligned_cols=206 Identities=12% Similarity=0.084 Sum_probs=134.2
Q ss_pred CCCCeEEEeCCcc--hHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 46 YKDQTIFITGATG--FLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 46 ~~~~~ilItGatG--~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
+++++++||||++ .||.++++.|++.| ++|++..|+.. ..+.+.++ ...
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G---~~vil~~r~~~---~~~~~~~~---------~~~-------------- 54 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREG---AELAFTYQNDK---LKGRVEEF---------AAQ-------------- 54 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCC---CEEEEEecchh---HHHHHHHH---------Hhc--------------
Confidence 6789999999985 89999999999998 78888887621 11111111 110
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh----------
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF---------- 186 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~---------- 186 (366)
.....++.+|+++++ ++..++. .+|++|||||....
T Consensus 55 ---------------------~~~~~~~~~Dl~~~~------~v~~~~~~~~~~~g~iD~linnAg~~~~~~~~~~~~~~ 107 (262)
T PRK07984 55 ---------------------LGSDIVLPCDVAEDA------SIDAMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNA 107 (262)
T ss_pred ---------------------cCCceEeecCCCCHH------HHHHHHHHHHhhcCCCCEEEECCccCCccccCCcchhh
Confidence 123457889999987 6665553 47999999996421
Q ss_pred --hhhHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhh
Q psy17528 187 --DEHIRTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNE 263 (366)
Q Consensus 187 --~~~~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 263 (366)
.+.++..+++|+.+...+.+.+... ..-.++|++||.......
T Consensus 108 ~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~~~~~---------------------------------- 153 (262)
T PRK07984 108 VTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAI---------------------------------- 153 (262)
T ss_pred cCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCCCCCC----------------------------------
Confidence 1244567888999888877766442 122579999987542110
Q ss_pred cccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCC
Q psy17528 264 HIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDP 338 (366)
Q Consensus 264 ~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~ 338 (366)
+....|+.+|...+.+.+... +++.++.+.||.|..+..... .............
T Consensus 154 ----~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~-------~~~~~~~~~~~~~--------- 213 (262)
T PRK07984 154 ----PNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGI-------KDFRKMLAHCEAV--------- 213 (262)
T ss_pred ----CCcchhHHHHHHHHHHHHHHHHHhcccCcEEeeeecCcccchHHhcC-------CchHHHHHHHHHc---------
Confidence 011579999999999987766 689999999999876421100 0001111111111
Q ss_pred CcccCcccHHHHHHHHHHHHHhh
Q psy17528 339 NISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 339 ~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
....-+...+|+++++++++...
T Consensus 214 ~p~~r~~~pedva~~~~~L~s~~ 236 (262)
T PRK07984 214 TPIRRTVTIEDVGNSAAFLCSDL 236 (262)
T ss_pred CCCcCCCCHHHHHHHHHHHcCcc
Confidence 11233678899999999988653
|
|
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.2e-12 Score=118.78 Aligned_cols=207 Identities=12% Similarity=0.116 Sum_probs=128.3
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
++++||||+|+||++++++|++.| .+|+++.|.... ..+.+.+. +..
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G---~~V~~~~~~~~~--~~~~~~~~--------l~~-------------------- 48 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEG---YRVVLHYHRSAA--AASTLAAE--------LNA-------------------- 48 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCC---CeEEEEcCCcHH--HHHHHHHH--------HHh--------------------
Confidence 579999999999999999999998 788887765321 11111111 110
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH-------hCcCEEEEcCcccCh------h--------
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI-------SQTTIIFHIAATVRF------D-------- 187 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~-------~~~d~Vih~a~~~~~------~-------- 187 (366)
....++.++.+|++|.+.. ...+.+++ .++|+||||||.... +
T Consensus 49 --------------~~~~~~~~~~~Dv~d~~~~--~~~~~~~~~~~~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~ 112 (267)
T TIGR02685 49 --------------RRPNSAVTCQADLSNSATL--FSRCEAIIDACFRAFGRCDVLVNNASAFYPTPLLRGDAGEGVGDK 112 (267)
T ss_pred --------------ccCCceEEEEccCCCchhh--HHHHHHHHHHHHHccCCceEEEECCccCCCCcccccccccccccc
Confidence 0123566789999997510 00112222 368999999996321 1
Q ss_pred ----hhHHHHHHHHHHHHHHHHHHHHhcC---------CCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcc
Q psy17528 188 ----EHIRTAYNINVKGTQTILALAKRMK---------GLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHAS 254 (366)
Q Consensus 188 ----~~~~~~~~~nv~~~~~ll~~a~~~~---------~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~ 254 (366)
..+...+++|+.+...+.+.+.+.. ...+++.+||.......
T Consensus 113 ~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~~s~~~~~~~------------------------- 167 (267)
T TIGR02685 113 KSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLSIVNLCDAMTDQPL------------------------- 167 (267)
T ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCeEEEEehhhhccCCC-------------------------
Confidence 1255778999999888887654320 12357777765432110
Q ss_pred hHHHHhhhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcC
Q psy17528 255 DEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTG 329 (366)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g 329 (366)
+....|+.+|...+.+++... +|++++.|+||.+..+...+ ..........
T Consensus 168 -------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~~~~~~~~~-----------~~~~~~~~~~ 223 (267)
T TIGR02685 168 -------------LGFTMYTMAKHALEGLTRSAALELAPLQIRVNGVAPGLSLLPDAMP-----------FEVQEDYRRK 223 (267)
T ss_pred -------------cccchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCccCccccc-----------hhHHHHHHHh
Confidence 011679999999999998765 68999999999987653211 0011111111
Q ss_pred cceeecCCCCcccCcccHHHHHHHHHHHHHhh
Q psy17528 330 LIRVVQTDPNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 330 ~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
. ++ ...+...+|++++++.++..+
T Consensus 224 ~--~~------~~~~~~~~~va~~~~~l~~~~ 247 (267)
T TIGR02685 224 V--PL------GQREASAEQIADVVIFLVSPK 247 (267)
T ss_pred C--CC------CcCCCCHHHHHHHHHHHhCcc
Confidence 0 00 112467899999999988654
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.8e-12 Score=117.70 Aligned_cols=192 Identities=20% Similarity=0.222 Sum_probs=135.1
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
++|||||||||+|++++++|++.| +.|.++.|+......
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~---~~v~~~~r~~~~~~~-------------------------------------- 39 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARG---HEVRAAVRNPEAAAA-------------------------------------- 39 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCC---CEEEEEEeCHHHHHh--------------------------------------
Confidence 479999999999999999999998 999999998653210
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALA 208 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll~~a 208 (366)
. . ..++++.+|+.++. .+...+++++.++++.+... ... ...........+..+.+
T Consensus 40 ------------~--~-~~v~~~~~d~~~~~------~l~~a~~G~~~~~~i~~~~~-~~~--~~~~~~~~~~~~~a~~a 95 (275)
T COG0702 40 ------------L--A-GGVEVVLGDLRDPK------SLVAGAKGVDGVLLISGLLD-GSD--AFRAVQVTAVVRAAEAA 95 (275)
T ss_pred ------------h--c-CCcEEEEeccCCHh------HHHHHhccccEEEEEecccc-ccc--chhHHHHHHHHHHHHHh
Confidence 1 1 68899999999988 78889999999999988654 222 12222333334444444
Q ss_pred HhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHHhc
Q psy17528 209 KRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVG 288 (366)
Q Consensus 209 ~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~ 288 (366)
. .+.++++++|...+... .+..|..+|...|+.+.+.
T Consensus 96 ~--~~~~~~~~~s~~~~~~~----------------------------------------~~~~~~~~~~~~e~~l~~s- 132 (275)
T COG0702 96 G--AGVKHGVSLSVLGADAA----------------------------------------SPSALARAKAAVEAALRSS- 132 (275)
T ss_pred c--CCceEEEEeccCCCCCC----------------------------------------CccHHHHHHHHHHHHHHhc-
Confidence 3 25778888888664311 1278999999999999988
Q ss_pred CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhhhh
Q psy17528 289 HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYFLF 363 (366)
Q Consensus 289 ~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~~ 363 (366)
+++++++|+..+|...... ........+.+.... +.....++..+|++.++..++..+..
T Consensus 133 -g~~~t~lr~~~~~~~~~~~------------~~~~~~~~~~~~~~~--~~~~~~~i~~~d~a~~~~~~l~~~~~ 192 (275)
T COG0702 133 -GIPYTTLRRAAFYLGAGAA------------FIEAAEAAGLPVIPR--GIGRLSPIAVDDVAEALAAALDAPAT 192 (275)
T ss_pred -CCCeEEEecCeeeeccchh------------HHHHHHhhCCceecC--CCCceeeeEHHHHHHHHHHHhcCCcc
Confidence 6999999977776644321 011222233322222 23378999999999999998876543
|
|
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.3e-12 Score=119.13 Aligned_cols=206 Identities=13% Similarity=0.116 Sum_probs=130.7
Q ss_pred eEEEeCCcchHHHHHHHHHHH----hCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 50 TIFITGATGFLGSLLVEKLLR----CCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 50 ~ilItGatG~IG~~lv~~Ll~----~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
.++||||+|.||.+++++|.+ .| .+|+++.|+... .+.+.+. +..
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g---~~V~~~~r~~~~---~~~~~~~--------l~~----------------- 50 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPG---SVLVLSARNDEA---LRQLKAE--------IGA----------------- 50 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCC---cEEEEEEcCHHH---HHHHHHH--------HHh-----------------
Confidence 689999999999999999987 56 789999997432 1111111 111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhC-----------cCEEEEcCcccCh--------
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQ-----------TTIIFHIAATVRF-------- 186 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~-----------~d~Vih~a~~~~~-------- 186 (366)
.....++.++.+|+.+.+ ++..+++. .|++|||||....
T Consensus 51 ----------------~~~~~~v~~~~~Dl~~~~------~v~~~~~~~~~~~g~~~~~~~~lv~nAG~~~~~~~~~~~~ 108 (256)
T TIGR01500 51 ----------------ERSGLRVVRVSLDLGAEA------GLEQLLKALRELPRPKGLQRLLLINNAGTLGDVSKGFVDL 108 (256)
T ss_pred ----------------cCCCceEEEEEeccCCHH------HHHHHHHHHHhccccCCCceEEEEeCCcccCccccccccC
Confidence 001246788999999876 56555431 2589999996321
Q ss_pred --hhhHHHHHHHHHHHHHHHHHHHHhc----C-CCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHH
Q psy17528 187 --DEHIRTAYNINVKGTQTILALAKRM----K-GLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIA 259 (366)
Q Consensus 187 --~~~~~~~~~~nv~~~~~ll~~a~~~----~-~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~ 259 (366)
...+...+++|+.++..+.+.+.+. . ...++|++||....... |
T Consensus 109 ~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~~~~----------~------------------- 159 (256)
T TIGR01500 109 SDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAIQPF----------K------------------- 159 (256)
T ss_pred CCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhCCCC----------C-------------------
Confidence 1345678899999987776655432 1 13579999997653211 0
Q ss_pred hhhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCC-CccccccchHHHHHHHHhcCccee
Q psy17528 260 LLNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPM-PLWIKGFNGVMALALGAGTGLIRV 333 (366)
Q Consensus 260 ~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~ 333 (366)
....|+.+|...+.+.+... +++.++.+.||.|-.+..... +... . .... .....
T Consensus 160 ---------~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~v~PG~v~T~~~~~~~~~~~---~--~~~~-~~~~~---- 220 (256)
T TIGR01500 160 ---------GWALYCAGKAARDMLFQVLALEEKNPNVRVLNYAPGVLDTDMQQQVREESV---D--PDMR-KGLQE---- 220 (256)
T ss_pred ---------CchHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHhcC---C--hhHH-HHHHH----
Confidence 11579999999999887764 689999999999876421100 0000 0 0000 00000
Q ss_pred ecCCCCcccCcccHHHHHHHHHHHHHh
Q psy17528 334 VQTDPNISMDVVPGDRVINAMAALAWY 360 (366)
Q Consensus 334 l~~~~~~~~~~v~vdDva~ai~~~~~~ 360 (366)
......+...+|+|++++.++..
T Consensus 221 ----~~~~~~~~~p~eva~~~~~l~~~ 243 (256)
T TIGR01500 221 ----LKAKGKLVDPKVSAQKLLSLLEK 243 (256)
T ss_pred ----HHhcCCCCCHHHHHHHHHHHHhc
Confidence 00112367899999999998853
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.7e-12 Score=117.74 Aligned_cols=208 Identities=12% Similarity=0.034 Sum_probs=135.1
Q ss_pred ccCCCCeEEEeCCcc--hHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccc
Q psy17528 44 EFYKDQTIFITGATG--FLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGI 121 (366)
Q Consensus 44 ~~~~~~~ilItGatG--~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (366)
..+++|+++||||++ .||.++++.|.+.| .+|++..|+.. ..+.+.++. ..
T Consensus 4 ~~~~~k~~lITGas~~~GIG~a~a~~la~~G---~~v~~~~r~~~---~~~~~~~l~---------~~------------ 56 (260)
T PRK06603 4 GLLQGKKGLITGIANNMSISWAIAQLAKKHG---AELWFTYQSEV---LEKRVKPLA---------EE------------ 56 (260)
T ss_pred cccCCcEEEEECCCCCcchHHHHHHHHHHcC---CEEEEEeCchH---HHHHHHHHH---------Hh------------
Confidence 346789999999997 89999999999998 78888877521 122222211 10
Q ss_pred ccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC---------
Q psy17528 122 THRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR--------- 185 (366)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~--------- 185 (366)
. ....++.+|+++++ ++..+++ .+|++|||||...
T Consensus 57 -------------------~----g~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~iDilVnnag~~~~~~~~~~~~ 107 (260)
T PRK06603 57 -------------------I----GCNFVSELDVTNPK------SISNLFDDIKEKWGSFDFLLHGMAFADKNELKGRYV 107 (260)
T ss_pred -------------------c----CCceEEEccCCCHH------HHHHHHHHHHHHcCCccEEEEccccCCcccccCccc
Confidence 1 11235689999986 5555553 5899999998632
Q ss_pred --hhhhHHHHHHHHHHHHHHHHHHHHh-cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhh
Q psy17528 186 --FDEHIRTAYNINVKGTQTILALAKR-MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLN 262 (366)
Q Consensus 186 --~~~~~~~~~~~nv~~~~~ll~~a~~-~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 262 (366)
....+...+++|+.+...+++.+.+ +..-.++|++||....... |
T Consensus 108 ~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~~~----------~---------------------- 155 (260)
T PRK06603 108 DTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAEKVI----------P---------------------- 155 (260)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCccccCC----------C----------------------
Confidence 1235677889999998888886543 2222589999986543110 0
Q ss_pred hcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCC
Q psy17528 263 EHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTD 337 (366)
Q Consensus 263 ~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~ 337 (366)
....|+.+|...+.+.+... +++.++.+.||.|-.+...... .. ...........
T Consensus 156 ------~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~----~~---~~~~~~~~~~~------- 215 (260)
T PRK06603 156 ------NYNVMGVAKAALEASVKYLANDMGENNIRVNAISAGPIKTLASSAIG----DF---STMLKSHAATA------- 215 (260)
T ss_pred ------cccchhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcCcchhhhcCC----Cc---HHHHHHHHhcC-------
Confidence 01579999999998887765 6899999999998765321100 00 11111111110
Q ss_pred CCcccCcccHHHHHHHHHHHHHhh
Q psy17528 338 PNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 338 ~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
....+...+|+|+++++++...
T Consensus 216 --p~~r~~~pedva~~~~~L~s~~ 237 (260)
T PRK06603 216 --PLKRNTTQEDVGGAAVYLFSEL 237 (260)
T ss_pred --CcCCCCCHHHHHHHHHHHhCcc
Confidence 1223577899999999988643
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.5e-11 Score=111.07 Aligned_cols=175 Identities=19% Similarity=0.268 Sum_probs=125.2
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
|+++||||+|.||.+++++|.+. ++|++++|+..
T Consensus 1 ~~vlItGas~giG~~la~~l~~~----~~vi~~~r~~~------------------------------------------ 34 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR----HEVITAGRSSG------------------------------------------ 34 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc----CcEEEEecCCC------------------------------------------
Confidence 47999999999999999999876 67888888531
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh---CcCEEEEcCcccCh-------hhhHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS---QTTIIFHIAATVRF-------DEHIRTAYNINV 198 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~---~~d~Vih~a~~~~~-------~~~~~~~~~~nv 198 (366)
.+.+|+.+.+ .+.++++ ++|++||+||.... ...+...+++|+
T Consensus 35 ---------------------~~~~D~~~~~------~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~ 87 (199)
T PRK07578 35 ---------------------DVQVDITDPA------SIRALFEKVGKVDAVVSAAGKVHFAPLAEMTDEDFNVGLQSKL 87 (199)
T ss_pred ---------------------ceEecCCChH------HHHHHHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHH
Confidence 3578998876 6666665 68999999996421 234567788999
Q ss_pred HHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHH
Q psy17528 199 KGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTK 277 (366)
Q Consensus 199 ~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK 277 (366)
.++..+++.+.+. ....+|+++||....... +....|+.+|
T Consensus 88 ~~~~~l~~~~~~~~~~~g~iv~iss~~~~~~~--------------------------------------~~~~~Y~~sK 129 (199)
T PRK07578 88 MGQVNLVLIGQHYLNDGGSFTLTSGILSDEPI--------------------------------------PGGASAATVN 129 (199)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEcccccCCCC--------------------------------------CCchHHHHHH
Confidence 9999998876542 233579999987643111 0116799999
Q ss_pred HHHHHHHHHhc----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHH
Q psy17528 278 ATAEDLVRQVG----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINA 353 (366)
Q Consensus 278 ~~~E~~l~~~~----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~a 353 (366)
...+.+.+... +++.++.+.||.+-.+... . +. ... ...++..+|+|++
T Consensus 130 ~a~~~~~~~la~e~~~gi~v~~i~Pg~v~t~~~~---------------~-----~~--~~~-----~~~~~~~~~~a~~ 182 (199)
T PRK07578 130 GALEGFVKAAALELPRGIRINVVSPTVLTESLEK---------------Y-----GP--FFP-----GFEPVPAARVALA 182 (199)
T ss_pred HHHHHHHHHHHHHccCCeEEEEEcCCcccCchhh---------------h-----hh--cCC-----CCCCCCHHHHHHH
Confidence 99999887765 5789999999987433110 0 00 001 1246899999999
Q ss_pred HHHHHHhh
Q psy17528 354 MAALAWYF 361 (366)
Q Consensus 354 i~~~~~~~ 361 (366)
++.++...
T Consensus 183 ~~~~~~~~ 190 (199)
T PRK07578 183 YVRSVEGA 190 (199)
T ss_pred HHHHhccc
Confidence 99888653
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1e-11 Score=126.32 Aligned_cols=165 Identities=16% Similarity=0.154 Sum_probs=118.2
Q ss_pred cccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccc
Q psy17528 43 QEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGIT 122 (366)
Q Consensus 43 ~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (366)
...+++++++||||+|.||..++++|.+.| .+|++++|.... +.+.+... .
T Consensus 205 ~~~~~g~~vlItGasggIG~~la~~l~~~G---a~vi~~~~~~~~----~~l~~~~~---------~------------- 255 (450)
T PRK08261 205 DRPLAGKVALVTGAARGIGAAIAEVLARDG---AHVVCLDVPAAG----EALAAVAN---------R------------- 255 (450)
T ss_pred ccCCCCCEEEEecCCCHHHHHHHHHHHHCC---CEEEEEeCCccH----HHHHHHHH---------H-------------
Confidence 345678999999999999999999999998 789998885321 11111110 0
Q ss_pred cccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhh
Q psy17528 123 HRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDE 188 (366)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~ 188 (366)
-...++.+|+++.+ .+..++. .+|+|||+||... ...
T Consensus 256 -----------------------~~~~~~~~Dv~~~~------~~~~~~~~~~~~~g~id~vi~~AG~~~~~~~~~~~~~ 306 (450)
T PRK08261 256 -----------------------VGGTALALDITAPD------APARIAEHLAERHGGLDIVVHNAGITRDKTLANMDEA 306 (450)
T ss_pred -----------------------cCCeEEEEeCCCHH------HHHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHH
Confidence 12246788999876 5554443 5799999999653 234
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcc
Q psy17528 189 HIRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHI 265 (366)
Q Consensus 189 ~~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (366)
.++..+++|+.++..+.+.+... ....+||++||...+....
T Consensus 307 ~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~~~~~g~~----------------------------------- 351 (450)
T PRK08261 307 RWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSISGIAGNR----------------------------------- 351 (450)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCCCC-----------------------------------
Confidence 56778899999999999987652 1236899999976542210
Q ss_pred cCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCcccc
Q psy17528 266 IGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFP 303 (366)
Q Consensus 266 ~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G 303 (366)
....|+.+|...+.+++.+. .++.++.+.||.+-.
T Consensus 352 ---~~~~Y~asKaal~~~~~~la~el~~~gi~v~~v~PG~i~t 391 (450)
T PRK08261 352 ---GQTNYAASKAGVIGLVQALAPLLAERGITINAVAPGFIET 391 (450)
T ss_pred ---CChHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeCcCcc
Confidence 01679999997777776554 689999999998754
|
|
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.5e-11 Score=116.22 Aligned_cols=207 Identities=15% Similarity=0.062 Sum_probs=134.1
Q ss_pred cCCCCeEEEeCC--cchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccc
Q psy17528 45 FYKDQTIFITGA--TGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGIT 122 (366)
Q Consensus 45 ~~~~~~ilItGa--tG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (366)
++++++++|||| ++.||.+++++|++.| .+|++..|... ..+++.++.. .
T Consensus 3 ~l~~k~vlItGas~~~GIG~a~a~~l~~~G---~~v~~~~~~~~---~~~~~~~~~~---------~------------- 54 (260)
T PRK06997 3 FLAGKRILITGLLSNRSIAYGIAKACKREG---AELAFTYVGDR---FKDRITEFAA---------E------------- 54 (260)
T ss_pred ccCCcEEEEeCCCCCCcHHHHHHHHHHHCC---CeEEEEccchH---HHHHHHHHHH---------h-------------
Confidence 367899999996 6799999999999998 78887766421 1122222110 0
Q ss_pred cccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh---------
Q psy17528 123 HRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF--------- 186 (366)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~--------- 186 (366)
. ....++.+|+.+++ ++..+++ .+|++|||||....
T Consensus 55 ------------------~----~~~~~~~~Dv~d~~------~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~ 106 (260)
T PRK06997 55 ------------------F----GSDLVFPCDVASDE------QIDALFASLGQHWDGLDGLVHSIGFAPREAIAGDFLD 106 (260)
T ss_pred ------------------c----CCcceeeccCCCHH------HHHHHHHHHHHHhCCCcEEEEccccCCccccccccch
Confidence 1 11236789999987 5665553 58999999996421
Q ss_pred ---hhhHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhh
Q psy17528 187 ---DEHIRTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLN 262 (366)
Q Consensus 187 ---~~~~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 262 (366)
...++..+++|+.+...+.+.+.+. ....++|++||....... |
T Consensus 107 ~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~iss~~~~~~~----------~---------------------- 154 (260)
T PRK06997 107 GLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERVV----------P---------------------- 154 (260)
T ss_pred hcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEeccccccCC----------C----------------------
Confidence 1345678899999998888876542 223589999987543110 0
Q ss_pred hcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCC
Q psy17528 263 EHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTD 337 (366)
Q Consensus 263 ~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~ 337 (366)
....|+.+|...+.+.+... +++.++.+.||.|-.+.... +. .. ......... . .
T Consensus 155 ------~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~---~~-~~---~~~~~~~~~-~---~--- 214 (260)
T PRK06997 155 ------NYNTMGLAKASLEASVRYLAVSLGPKGIRANGISAGPIKTLAASG---IK-DF---GKILDFVES-N---A--- 214 (260)
T ss_pred ------CcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCccccchhcc---cc-ch---hhHHHHHHh-c---C---
Confidence 01579999999998887765 68999999999987642210 00 00 001111111 0 0
Q ss_pred CCcccCcccHHHHHHHHHHHHHhh
Q psy17528 338 PNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 338 ~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
....+...+|++++++.++...
T Consensus 215 --p~~r~~~pedva~~~~~l~s~~ 236 (260)
T PRK06997 215 --PLRRNVTIEEVGNVAAFLLSDL 236 (260)
T ss_pred --cccccCCHHHHHHHHHHHhCcc
Confidence 1123678899999999988653
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-11 Score=120.90 Aligned_cols=175 Identities=14% Similarity=0.160 Sum_probs=117.4
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
.+++++||||+|+||.+++++|.+.| .+|++++|+.+. .+.+.+. +...
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G---~~Vil~~R~~~~---l~~~~~~--------l~~~----------------- 100 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKG---LNLVLVARNPDK---LKDVSDS--------IQSK----------------- 100 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCC---CCEEEEECCHHH---HHHHHHH--------HHHH-----------------
Confidence 37899999999999999999999998 789999997532 1111111 1110
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccCh---------hhhHHHHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRF---------DEHIRTAYN 195 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~---------~~~~~~~~~ 195 (366)
.+ ..++..+.+|+.+.. ......+.+.+. ++|++|||||.... ....+..++
T Consensus 101 --------------~~--~~~~~~~~~Dl~~~~-~~~~~~l~~~~~~~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~ 163 (320)
T PLN02780 101 --------------YS--KTQIKTVVVDFSGDI-DEGVKRIKETIEGLDVGVLINNVGVSYPYARFFHEVDEELLKNLIK 163 (320)
T ss_pred --------------CC--CcEEEEEEEECCCCc-HHHHHHHHHHhcCCCccEEEEecCcCCCCCcccccCCHHHHHHHHH
Confidence 00 135667788987521 000112233333 35699999996421 234567889
Q ss_pred HHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCch
Q psy17528 196 INVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNS 272 (366)
Q Consensus 196 ~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (366)
+|+.++..+.+.+... .+..++|++||..++... +.| ....
T Consensus 164 vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~a~~~~~--------~~p----------------------------~~~~ 207 (320)
T PLN02780 164 VNVEGTTKVTQAVLPGMLKRKKGAIINIGSGAAIVIP--------SDP----------------------------LYAV 207 (320)
T ss_pred HhHHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCC--------CCc----------------------------cchH
Confidence 9999998888875431 245689999997654210 001 1168
Q ss_pred HHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCC
Q psy17528 273 YTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTL 305 (366)
Q Consensus 273 Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~ 305 (366)
|+.+|...+.+.+... +|++++++.||.|-.+-
T Consensus 208 Y~aSKaal~~~~~~L~~El~~~gI~V~~v~PG~v~T~~ 245 (320)
T PLN02780 208 YAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKM 245 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCeEEEEEeeCceecCc
Confidence 9999999999887765 68999999999997763
|
|
| >KOG1205|consensus | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.9e-12 Score=120.42 Aligned_cols=170 Identities=19% Similarity=0.198 Sum_probs=119.3
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
+.+.+|+|+||||++.||.+++..|.+.| .+++++.|.... .+++.+.+ ++.
T Consensus 8 e~~~~kvVvITGASsGIG~~lA~~la~~G---~~l~lvar~~rr---l~~v~~~l--------~~~-------------- 59 (282)
T KOG1205|consen 8 ERLAGKVVLITGASSGIGEALAYELAKRG---AKLVLVARRARR---LERVAEEL--------RKL-------------- 59 (282)
T ss_pred HHhCCCEEEEeCCCcHHHHHHHHHHHhCC---CceEEeehhhhh---HHHHHHHH--------HHh--------------
Confidence 45668999999999999999999999999 777788886543 23332221 111
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH-------hCcCEEEEcCcccC-------hhhh
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI-------SQTTIIFHIAATVR-------FDEH 189 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~-------~~~d~Vih~a~~~~-------~~~~ 189 (366)
.+. .++.++++|++|.+ +..+++ .++|++|||||... ...+
T Consensus 60 -----------------~~~--~~v~~~~~Dvs~~~------~~~~~~~~~~~~fg~vDvLVNNAG~~~~~~~~~~~~~~ 114 (282)
T KOG1205|consen 60 -----------------GSL--EKVLVLQLDVSDEE------SVKKFVEWAIRHFGRVDVLVNNAGISLVGFLEDTDIED 114 (282)
T ss_pred -----------------CCc--CccEEEeCccCCHH------HHHHHHHHHHHhcCCCCEEEecCccccccccccCcHHH
Confidence 111 16889999999987 666554 37899999999853 1235
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 190 IRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 190 ~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
....+++|+.|+..+.+++... .+-.+||.+||..+...- |
T Consensus 115 ~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~~~~----------P-------------------------- 158 (282)
T KOG1205|consen 115 VRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGKMPL----------P-------------------------- 158 (282)
T ss_pred HHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccccccCC----------C--------------------------
Confidence 5678999999988777766432 134699999998776222 1
Q ss_pred CCCCchHHHHHHHHHHHHHHhc---CCCC--EE-EEecCccccC
Q psy17528 267 GGKPNSYTLTKATAEDLVRQVG---HELP--IC-VLRPSIVFPT 304 (366)
Q Consensus 267 ~~~~~~Y~~sK~~~E~~l~~~~---~gl~--~~-ilRp~~v~G~ 304 (366)
....|..||.+.+.+..... .+.. +. ++-||.|-..
T Consensus 159 --~~~~Y~ASK~Al~~f~etLR~El~~~~~~i~i~V~PG~V~Te 200 (282)
T KOG1205|consen 159 --FRSIYSASKHALEGFFETLRQELIPLGTIIIILVSPGPIETE 200 (282)
T ss_pred --cccccchHHHHHHHHHHHHHHHhhccCceEEEEEecCceeec
Confidence 12589999999998887666 2222 22 4778877543
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-11 Score=117.12 Aligned_cols=232 Identities=13% Similarity=0.048 Sum_probs=137.6
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+|+++|||| |+||.+++++|. .| ++|++++|+... .+.+.+.+. .
T Consensus 2 ~k~~lItGa-~gIG~~la~~l~-~G---~~Vv~~~r~~~~---~~~~~~~l~--------~------------------- 46 (275)
T PRK06940 2 KEVVVVIGA-GGIGQAIARRVG-AG---KKVLLADYNEEN---LEAAAKTLR--------E------------------- 46 (275)
T ss_pred CCEEEEECC-ChHHHHHHHHHh-CC---CEEEEEeCCHHH---HHHHHHHHH--------h-------------------
Confidence 468999998 799999999996 67 899999997431 111111110 0
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh------CcCEEEEcCcccChhhhHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS------QTTIIFHIAATVRFDEHIRTAYNINVKGT 201 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~------~~d~Vih~a~~~~~~~~~~~~~~~nv~~~ 201 (366)
...++.++.+|+.+.+ .+..+++ .+|++|||||.......+...+++|+.++
T Consensus 47 ----------------~~~~~~~~~~Dv~d~~------~i~~~~~~~~~~g~id~li~nAG~~~~~~~~~~~~~vN~~g~ 104 (275)
T PRK06940 47 ----------------AGFDVSTQEVDVSSRE------SVKALAATAQTLGPVTGLVHTAGVSPSQASPEAILKVDLYGT 104 (275)
T ss_pred ----------------cCCeEEEEEeecCCHH------HHHHHHHHHHhcCCCCEEEECCCcCCchhhHHHHHHHhhHHH
Confidence 1246778999999976 5555543 58999999997655567788999999999
Q ss_pred HHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhh---hcccCCCCchHHHHH
Q psy17528 202 QTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLN---EHIIGGKPNSYTLTK 277 (366)
Q Consensus 202 ~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Y~~sK 277 (366)
..+++.+.+. ....++|++||........+..+.....+. .+...+.... +.........|+.+|
T Consensus 105 ~~l~~~~~~~m~~~g~iv~isS~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~Y~asK 173 (275)
T PRK06940 105 ALVLEEFGKVIAPGGAGVVIASQSGHRLPALTAEQERALAT-----------TPTEELLSLPFLQPDAIEDSLHAYQIAK 173 (275)
T ss_pred HHHHHHHHHHHhhCCCEEEEEecccccCcccchhhhccccc-----------cccccccccccccccccCCccchhHHHH
Confidence 9998876542 122456778877543221111110000000 0000000000 000001125799999
Q ss_pred HHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHH
Q psy17528 278 ATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVIN 352 (366)
Q Consensus 278 ~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ 352 (366)
+..+.+.+... +++.++.+.||.|..+.... .+.. .. .......... ....-+...+|+|+
T Consensus 174 aa~~~~~~~la~e~~~~gIrvn~i~PG~v~T~~~~~--~~~~-~~--~~~~~~~~~~---------~p~~r~~~peeia~ 239 (275)
T PRK06940 174 RANALRVMAEAVKWGERGARINSISPGIISTPLAQD--ELNG-PR--GDGYRNMFAK---------SPAGRPGTPDEIAA 239 (275)
T ss_pred HHHHHHHHHHHHHHccCCeEEEEeccCcCcCccchh--hhcC-Cc--hHHHHHHhhh---------CCcccCCCHHHHHH
Confidence 99888887654 68999999999998764211 0000 00 0111111110 01223678899999
Q ss_pred HHHHHHHhh
Q psy17528 353 AMAALAWYF 361 (366)
Q Consensus 353 ai~~~~~~~ 361 (366)
+++.++...
T Consensus 240 ~~~fL~s~~ 248 (275)
T PRK06940 240 LAEFLMGPR 248 (275)
T ss_pred HHHHHcCcc
Confidence 999987543
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.9e-11 Score=115.20 Aligned_cols=206 Identities=14% Similarity=0.096 Sum_probs=133.2
Q ss_pred CCCCeEEEeCC--cchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 46 YKDQTIFITGA--TGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 46 ~~~~~ilItGa--tG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
+++++++|||| ++.||.+++++|++.| .+|++..|+... ...+.+.+.
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G---~~v~l~~r~~~~-~~~~~~~~~-------------------------- 54 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQG---AEVVLTGFGRAL-RLTERIAKR-------------------------- 54 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCC---CEEEEecCccch-hHHHHHHHh--------------------------
Confidence 56899999999 8999999999999998 889998886421 111111110
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh----------
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF---------- 186 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~---------- 186 (366)
. ..++.++.+|+.+.+ ++..+++ .+|++|||||....
T Consensus 55 -----------------~---~~~~~~~~~Dv~~~~------~i~~~~~~~~~~~g~iD~li~nAG~~~~~~~~~~~~~~ 108 (256)
T PRK07889 55 -----------------L---PEPAPVLELDVTNEE------HLASLADRVREHVDGLDGVVHSIGFAPQSALGGNFLDA 108 (256)
T ss_pred -----------------c---CCCCcEEeCCCCCHH------HHHHHHHHHHHHcCCCcEEEEccccccccccCCCcccC
Confidence 1 124568899999976 5555442 58999999997421
Q ss_pred -hhhHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhc
Q psy17528 187 -DEHIRTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEH 264 (366)
Q Consensus 187 -~~~~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 264 (366)
...+...+++|+.+...+.+.+.+. ..-.++|++|+....+ .|
T Consensus 109 ~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~~~~~~-----------~~------------------------ 153 (256)
T PRK07889 109 PWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDFDATVA-----------WP------------------------ 153 (256)
T ss_pred CHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEeeccccc-----------CC------------------------
Confidence 1234567899999988887766542 2224788887532110 00
Q ss_pred ccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCC
Q psy17528 265 IIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPN 339 (366)
Q Consensus 265 ~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~ 339 (366)
.-..|+.+|...+.+.+... +|+.++.+.||.|-.+.....+. . ........... .
T Consensus 154 ----~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~----~---~~~~~~~~~~~----p---- 214 (256)
T PRK07889 154 ----AYDWMGVAKAALESTNRYLARDLGPRGIRVNLVAAGPIRTLAAKAIPG----F---ELLEEGWDERA----P---- 214 (256)
T ss_pred ----ccchhHHHHHHHHHHHHHHHHHhhhcCeEEEeeccCcccChhhhcccC----c---HHHHHHHHhcC----c----
Confidence 01568999999988887655 68999999999997753221110 0 01111111110 0
Q ss_pred cccCcccHHHHHHHHHHHHHhh
Q psy17528 340 ISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 340 ~~~~~v~vdDva~ai~~~~~~~ 361 (366)
..+.+...+|+|++++.++...
T Consensus 215 ~~~~~~~p~evA~~v~~l~s~~ 236 (256)
T PRK07889 215 LGWDVKDPTPVARAVVALLSDW 236 (256)
T ss_pred cccccCCHHHHHHHHHHHhCcc
Confidence 0113678899999999988654
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.3e-11 Score=113.24 Aligned_cols=163 Identities=13% Similarity=0.085 Sum_probs=111.3
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
|+++||||+|.||.+++++|++.| ++|++++|+... .++..+. +..
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G---~~V~~~~r~~~~---~~~~~~~--------l~~-------------------- 46 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKG---ARVVISSRNEEN---LEKALKE--------LKE-------------------- 46 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcC---CEEEEEeCCHHH---HHHHHHH--------HHh--------------------
Confidence 479999999999999999999998 789999987431 1111111 100
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh---------hhhHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF---------DEHIRT 192 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~---------~~~~~~ 192 (366)
..++.++.+|+++.+ .+.++++ .+|+||||||.... ...+..
T Consensus 47 ----------------~~~~~~~~~Dv~d~~------~~~~~~~~~~~~~g~id~li~naG~~~~~~~~~~~~~~~~~~~ 104 (259)
T PRK08340 47 ----------------YGEVYAVKADLSDKD------DLKNLVKEAWELLGGIDALVWNAGNVRCEPCMLHEAGYSDWLE 104 (259)
T ss_pred ----------------cCCceEEEcCCCCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCccccccccHHHHHH
Confidence 135678899999876 5555553 58999999996421 123344
Q ss_pred HHHHHHHHHHHHHHH----HHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 193 AYNINVKGTQTILAL----AKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 193 ~~~~nv~~~~~ll~~----a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
.+.+|+.+...+.+. +.+..+..+||++||..+.....
T Consensus 105 ~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~~~~~~~~-------------------------------------- 146 (259)
T PRK08340 105 AALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSVSVKEPMP-------------------------------------- 146 (259)
T ss_pred HHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCcccCCCCC--------------------------------------
Confidence 566777665544333 22222446899999986542110
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTL 305 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~ 305 (366)
....|+.+|...+.+.+... +|+.+..+.||.+-.+.
T Consensus 147 ~~~~y~~sKaa~~~~~~~la~e~~~~gI~v~~v~pG~v~t~~ 188 (259)
T PRK08340 147 PLVLADVTRAGLVQLAKGVSRTYGGKGIRAYTVLLGSFDTPG 188 (259)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeccCcccCcc
Confidence 01679999999999888766 68999999999887653
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.6e-11 Score=111.13 Aligned_cols=154 Identities=15% Similarity=0.095 Sum_probs=112.5
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
++++||||+|.||+++++.|++.| ++|++++|+... +.+.. ..
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g---~~v~~~~r~~~~------~~~~~---------~~------------------- 43 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDG---HKVTLVGARRDD------LEVAA---------KE------------------- 43 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCC---CEEEEEeCCHHH------HHHHH---------Hh-------------------
Confidence 369999999999999999999998 889999986421 11110 00
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh----CcCEEEEcCcccC------------hhhhHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS----QTTIIFHIAATVR------------FDEHIRT 192 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~----~~d~Vih~a~~~~------------~~~~~~~ 192 (366)
..+.++.+|+.+.+ .+..+++ .+|++|||+|... ....+..
T Consensus 44 -----------------~~~~~~~~D~~~~~------~v~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~ 100 (223)
T PRK05884 44 -----------------LDVDAIVCDNTDPA------SLEEARGLFPHHLDTIVNVPAPSWDAGDPRTYSLADTANAWRN 100 (223)
T ss_pred -----------------ccCcEEecCCCCHH------HHHHHHHHHhhcCcEEEECCCccccCCCCcccchhcCHHHHHH
Confidence 12457789999876 5665554 5899999987410 1245677
Q ss_pred HHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCc
Q psy17528 193 AYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPN 271 (366)
Q Consensus 193 ~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (366)
.+++|+.++..+++.+.+. ....++|++||... +. ..
T Consensus 101 ~~~~N~~~~~~~~~~~~~~~~~~g~Iv~isS~~~-------------~~-----------------------------~~ 138 (223)
T PRK05884 101 ALDATVLSAVLTVQSVGDHLRSGGSIISVVPENP-------------PA-----------------------------GS 138 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCeEEEEecCCC-------------CC-----------------------------cc
Confidence 8999999999998876542 22358999998540 00 16
Q ss_pred hHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccC
Q psy17528 272 SYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPT 304 (366)
Q Consensus 272 ~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~ 304 (366)
.|+.+|...+.+.+... +++.++.+.||.+..+
T Consensus 139 ~Y~asKaal~~~~~~la~e~~~~gI~v~~v~PG~v~t~ 176 (223)
T PRK05884 139 AEAAIKAALSNWTAGQAAVFGTRGITINAVACGRSVQP 176 (223)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccCch
Confidence 79999999999887765 6899999999988643
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.2e-11 Score=114.25 Aligned_cols=174 Identities=10% Similarity=0.058 Sum_probs=116.4
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCc-------CHHHHHHHHhhhhhhhhhhhcCCCCCCc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGST-------SITQRVYNYFNDAVFDRMRLECPNYADK 116 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~-------~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 116 (366)
..+++++++||||++.||.+++++|++.| .+|+++.|+.... ...+.+.+.+.
T Consensus 4 ~~l~~k~~lITGgs~GIG~aia~~la~~G---~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~----------------- 63 (305)
T PRK08303 4 KPLRGKVALVAGATRGAGRGIAVELGAAG---ATVYVTGRSTRARRSEYDRPETIEETAELVT----------------- 63 (305)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEecccccccccccccchHHHHHHHHH-----------------
Confidence 34678999999999999999999999998 7899999974321 11111111111
Q ss_pred cccccccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcC-ccc----
Q psy17528 117 VDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIA-ATV---- 184 (366)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a-~~~---- 184 (366)
....++.++.+|+.+.+ ++..+++ .+|++|||| |..
T Consensus 64 --------------------------~~~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~iDilVnnA~g~~~~~~ 111 (305)
T PRK08303 64 --------------------------AAGGRGIAVQVDHLVPE------QVRALVERIDREQGRLDILVNDIWGGEKLFE 111 (305)
T ss_pred --------------------------hcCCceEEEEcCCCCHH------HHHHHHHHHHHHcCCccEEEECCcccccccc
Confidence 01235678899999976 5655543 579999999 632
Q ss_pred ---Ch----hhhHHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcc
Q psy17528 185 ---RF----DEHIRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHAS 254 (366)
Q Consensus 185 ---~~----~~~~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~ 254 (366)
.. ...+...+++|+.+...+.+.+... .+..++|.+||........ +.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~~g~IV~isS~~~~~~~~-------~~--------------- 169 (305)
T PRK08303 112 WGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRPGGLVVEITDGTAEYNAT-------HY--------------- 169 (305)
T ss_pred cCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCcEEEEECCccccccCc-------CC---------------
Confidence 11 1234567788888877776655431 1235899999854321000 00
Q ss_pred hHHHHhhhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccC
Q psy17528 255 DEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPT 304 (366)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~ 304 (366)
.....|+.+|.....+.+... +|+.++.|.||.|-.+
T Consensus 170 -------------~~~~~Y~asKaal~~lt~~La~el~~~gIrVn~v~PG~v~T~ 211 (305)
T PRK08303 170 -------------RLSVFYDLAKTSVNRLAFSLAHELAPHGATAVALTPGWLRSE 211 (305)
T ss_pred -------------CCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEecCCccccH
Confidence 001569999999998887655 6899999999988654
|
|
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.8e-11 Score=109.91 Aligned_cols=163 Identities=15% Similarity=0.184 Sum_probs=109.8
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
|+++||||++.||.+++++|.+ | .+|+++.|+.+. .+.+.+. ++.
T Consensus 1 ~~vlItGas~GIG~aia~~l~~-g---~~Vil~~r~~~~---~~~~~~~--------l~~-------------------- 45 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLCH-G---EDVVLAARRPEA---AQGLASD--------LRQ-------------------- 45 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHhC-C---CEEEEEeCCHHH---HHHHHHH--------HHh--------------------
Confidence 5799999999999999999984 7 889999987432 1222111 111
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH-------hCcCEEEEcCcccChh-------hhHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI-------SQTTIIFHIAATVRFD-------EHIRTAY 194 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~-------~~~d~Vih~a~~~~~~-------~~~~~~~ 194 (366)
. ....+.++.+|+.|.+ .+..++ ..+|++|||||..... ....+..
T Consensus 46 ------------~--~~~~~~~~~~Dv~d~~------~v~~~~~~~~~~~g~id~lv~nag~~~~~~~~~~~~~~~~~~~ 105 (246)
T PRK05599 46 ------------R--GATSVHVLSFDAQDLD------THRELVKQTQELAGEISLAVVAFGILGDQERAETDEAHAVEIA 105 (246)
T ss_pred ------------c--cCCceEEEEcccCCHH------HHHHHHHHHHHhcCCCCEEEEecCcCCCchhhhcCcHHHHHHH
Confidence 0 1134778899999986 555443 2589999999975311 1233456
Q ss_pred HHHHHHHHHHHHH----HHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCC
Q psy17528 195 NINVKGTQTILAL----AKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKP 270 (366)
Q Consensus 195 ~~nv~~~~~ll~~----a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (366)
.+|+.+...+++. +.+.....++|++||........ ..
T Consensus 106 ~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~~--------------------------------------~~ 147 (246)
T PRK05599 106 TVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGWRARR--------------------------------------AN 147 (246)
T ss_pred HHHHHhHHHHHHHHHHHHHhcCCCCEEEEEeccccccCCc--------------------------------------CC
Confidence 6777776655443 33321235899999976542110 11
Q ss_pred chHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccC
Q psy17528 271 NSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPT 304 (366)
Q Consensus 271 ~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~ 304 (366)
..|+.+|...+.+.+... +++.++.+.||.|..+
T Consensus 148 ~~Y~asKaa~~~~~~~la~el~~~~I~v~~v~PG~v~T~ 186 (246)
T PRK05599 148 YVYGSTKAGLDAFCQGLADSLHGSHVRLIIARPGFVIGS 186 (246)
T ss_pred cchhhHHHHHHHHHHHHHHHhcCCCceEEEecCCcccch
Confidence 579999999888887654 6899999999998765
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-10 Score=108.92 Aligned_cols=108 Identities=19% Similarity=0.169 Sum_probs=81.1
Q ss_pred cccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccc
Q psy17528 43 QEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGIT 122 (366)
Q Consensus 43 ~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (366)
++.+++++++||||+|+||.+++++|++.| .+|++++|+.... ....
T Consensus 9 ~~~l~~k~~lITGas~gIG~ala~~l~~~G---~~Vi~~~r~~~~~-----~~~~------------------------- 55 (245)
T PRK12367 9 QSTWQGKRIGITGASGALGKALTKAFRAKG---AKVIGLTHSKINN-----SESN------------------------- 55 (245)
T ss_pred HHhhCCCEEEEEcCCcHHHHHHHHHHHHCC---CEEEEEECCchhh-----hhhh-------------------------
Confidence 456678999999999999999999999998 8899999875211 0000
Q ss_pred cccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh----hhhHHHHHHHHH
Q psy17528 123 HRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF----DEHIRTAYNINV 198 (366)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~----~~~~~~~~~~nv 198 (366)
.. ....++.+|+++.+ ++.+.+.++|++|||||.... ..+++..+++|+
T Consensus 56 ------------------~~---~~~~~~~~D~~~~~------~~~~~~~~iDilVnnAG~~~~~~~~~~~~~~~~~vN~ 108 (245)
T PRK12367 56 ------------------DE---SPNEWIKWECGKEE------SLDKQLASLDVLILNHGINPGGRQDPENINKALEINA 108 (245)
T ss_pred ------------------cc---CCCeEEEeeCCCHH------HHHHhcCCCCEEEECCccCCcCCCCHHHHHHHHHHHh
Confidence 00 11246788998876 677777789999999996421 345678899999
Q ss_pred HHHHHHHHHHHh
Q psy17528 199 KGTQTILALAKR 210 (366)
Q Consensus 199 ~~~~~ll~~a~~ 210 (366)
.++..+++.+.+
T Consensus 109 ~g~~~l~~~~~~ 120 (245)
T PRK12367 109 LSSWRLLELFED 120 (245)
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.3e-11 Score=104.37 Aligned_cols=149 Identities=20% Similarity=0.267 Sum_probs=109.6
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
|+++||||+|-||.+++++|++.| .++|+++.|+.. ....+.+.+. +..
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g--~~~v~~~~r~~~-~~~~~~l~~~--------l~~-------------------- 49 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRG--ARVVILTSRSED-SEGAQELIQE--------LKA-------------------- 49 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTT--TEEEEEEESSCH-HHHHHHHHHH--------HHH--------------------
T ss_pred CEEEEECCCCHHHHHHHHHHHhcC--ceEEEEeeeccc-cccccccccc--------ccc--------------------
Confidence 589999999999999999999995 278888888711 1111222211 111
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIRTAY 194 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~~~~ 194 (366)
...++.++.+|+.+.+ .+..+++ .+|++|||+|... ..+..+..+
T Consensus 50 ---------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~ld~li~~ag~~~~~~~~~~~~~~~~~~~ 108 (167)
T PF00106_consen 50 ---------------PGAKITFIECDLSDPE------SIRALIEEVIKRFGPLDILINNAGIFSDGSLDDLSEEELERVF 108 (167)
T ss_dssp ---------------TTSEEEEEESETTSHH------HHHHHHHHHHHHHSSESEEEEECSCTTSBSGGGSHHHHHHHHH
T ss_pred ---------------cccccccccccccccc------cccccccccccccccccccccccccccccccccccchhhhhcc
Confidence 1368899999999876 5665553 6799999999864 234567899
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHH
Q psy17528 195 NINVKGTQTILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYT 274 (366)
Q Consensus 195 ~~nv~~~~~ll~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~ 274 (366)
+.|+.+...+.+++.. .+..++|++||.....+. +....|.
T Consensus 109 ~~n~~~~~~~~~~~~~-~~~g~iv~~sS~~~~~~~--------------------------------------~~~~~Y~ 149 (167)
T PF00106_consen 109 RVNLFGPFLLAKALLP-QGGGKIVNISSIAGVRGS--------------------------------------PGMSAYS 149 (167)
T ss_dssp HHHTHHHHHHHHHHHH-HTTEEEEEEEEGGGTSSS--------------------------------------TTBHHHH
T ss_pred ccccceeeeeeehhee-ccccceEEecchhhccCC--------------------------------------CCChhHH
Confidence 9999999999998877 367799999998654221 1126899
Q ss_pred HHHHHHHHHHHHhc
Q psy17528 275 LTKATAEDLVRQVG 288 (366)
Q Consensus 275 ~sK~~~E~~l~~~~ 288 (366)
.+|...+.+++...
T Consensus 150 askaal~~~~~~la 163 (167)
T PF00106_consen 150 ASKAALRGLTQSLA 163 (167)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987654
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-10 Score=117.76 Aligned_cols=107 Identities=21% Similarity=0.239 Sum_probs=80.9
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++|+||||+|+||++++++|.+.| .+|++++|+... +.....
T Consensus 176 l~gK~VLITGASgGIG~aLA~~La~~G---~~Vi~l~r~~~~------l~~~~~-------------------------- 220 (406)
T PRK07424 176 LKGKTVAVTGASGTLGQALLKELHQQG---AKVVALTSNSDK------ITLEIN-------------------------- 220 (406)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCCHHH------HHHHHh--------------------------
Confidence 468999999999999999999999998 789999886431 111000
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh----hhhHHHHHHHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF----DEHIRTAYNINVKGT 201 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~----~~~~~~~~~~nv~~~ 201 (366)
. ....+..+.+|+.+.+ .+.+.+.++|++|||||.... .+..+..+++|+.++
T Consensus 221 ---------------~--~~~~v~~v~~Dvsd~~------~v~~~l~~IDiLInnAGi~~~~~~s~e~~~~~~~vNv~g~ 277 (406)
T PRK07424 221 ---------------G--EDLPVKTLHWQVGQEA------ALAELLEKVDILIINHGINVHGERTPEAINKSYEVNTFSA 277 (406)
T ss_pred ---------------h--cCCCeEEEEeeCCCHH------HHHHHhCCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHH
Confidence 0 0124567889999876 777788899999999996421 235577899999999
Q ss_pred HHHHHHHHh
Q psy17528 202 QTILALAKR 210 (366)
Q Consensus 202 ~~ll~~a~~ 210 (366)
..+++.+.+
T Consensus 278 i~Li~a~lp 286 (406)
T PRK07424 278 WRLMELFFT 286 (406)
T ss_pred HHHHHHHHH
Confidence 999887643
|
|
| >KOG1372|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-11 Score=115.05 Aligned_cols=234 Identities=17% Similarity=0.058 Sum_probs=154.2
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
.+..||||-||.=|++|++.||..| ++|+.++|..++- .++||.+++. ++++|.
T Consensus 28 rkvALITGItGQDGSYLaEfLL~Kg---YeVHGiiRRsSsF-NT~RIeHlY~-------------------nP~~h~--- 81 (376)
T KOG1372|consen 28 RKVALITGITGQDGSYLAEFLLSKG---YEVHGIIRRSSSF-NTARIEHLYS-------------------NPHTHN--- 81 (376)
T ss_pred ceEEEEecccCCCchHHHHHHHhCC---ceeeEEEeecccc-chhhhhhhhc-------------------Cchhcc---
Confidence 4689999999999999999999999 7788888876542 3566666554 233333
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccChhhhH---HHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRFDEHI---RTAYNINVKGTQ 202 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~~~~~---~~~~~~nv~~~~ 202 (366)
......+.||++|.+ .+..+++ ..+-|+|+|+.++..-.. +..-++...|+.
T Consensus 82 -----------------~~~mkLHYgDmTDss------~L~k~I~~ikPtEiYnLaAQSHVkvSFdlpeYTAeVdavGtL 138 (376)
T KOG1372|consen 82 -----------------GASMKLHYGDMTDSS------CLIKLISTIKPTEVYNLAAQSHVKVSFDLPEYTAEVDAVGTL 138 (376)
T ss_pred -----------------cceeEEeeccccchH------HHHHHHhccCchhhhhhhhhcceEEEeecccceeeccchhhh
Confidence 467889999999987 7888887 568999999986543221 223345667888
Q ss_pred HHHHHHHhcC--CCcEEEEeeCcceecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHH
Q psy17528 203 TILALAKRMK--GLKSFVHVSTAYCNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKA 278 (366)
Q Consensus 203 ~ll~~a~~~~--~~~~~v~iSS~~~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~ 278 (366)
.++++...+. ..-+|-..||+-.||.-. |+.|..+..|. ++|+.+|.
T Consensus 139 RlLdAi~~c~l~~~VrfYQAstSElyGkv~e~PQsE~TPFyPR-----------------------------SPYa~aKm 189 (376)
T KOG1372|consen 139 RLLDAIRACRLTEKVRFYQASTSELYGKVQEIPQSETTPFYPR-----------------------------SPYAAAKM 189 (376)
T ss_pred hHHHHHHhcCcccceeEEecccHhhcccccCCCcccCCCCCCC-----------------------------ChhHHhhh
Confidence 9998887651 123688889987777433 55565544443 88999998
Q ss_pred HHHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcce-eecCCCCcccCcccHHHHHHHHH
Q psy17528 279 TAEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIR-VVQTDPNISMDVVPGDRVINAMA 355 (366)
Q Consensus 279 ~~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~l~~~~~~~~~~v~vdDva~ai~ 355 (366)
.+-.++-.+. +++-.|-=-.++--.|+. +..--...+.+-+.++.-|+.. .-.++-+..+||-|..|.++||+
T Consensus 190 y~~WivvNyREAYnmfAcNGILFNHESPRR----GenFVTRKItRsvakI~~gqqe~~~LGNL~a~RDWGhA~dYVEAMW 265 (376)
T KOG1372|consen 190 YGYWIVVNYREAYNMFACNGILFNHESPRR----GENFVTRKITRSVAKISLGQQEKIELGNLSALRDWGHAGDYVEAMW 265 (376)
T ss_pred hheEEEEEhHHhhcceeeccEeecCCCCcc----ccchhhHHHHHHHHHhhhcceeeEEecchhhhcccchhHHHHHHHH
Confidence 7766654444 333333211222222322 1110011223334444445443 23467789999999999999999
Q ss_pred HHHHhhhh
Q psy17528 356 ALAWYFLF 363 (366)
Q Consensus 356 ~~~~~~~~ 363 (366)
.++++..+
T Consensus 266 ~mLQ~d~P 273 (376)
T KOG1372|consen 266 LMLQQDSP 273 (376)
T ss_pred HHHhcCCC
Confidence 99887654
|
|
| >KOG4039|consensus | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.7e-12 Score=110.51 Aligned_cols=164 Identities=22% Similarity=0.216 Sum_probs=127.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
|+++..+|.||||-+|+.+++++++. ++..+|+++.|.+..
T Consensus 16 mq~~s~fvlGAtG~~G~~llk~~~E~-~~FSKV~~i~RR~~~-------------------------------------- 56 (238)
T KOG4039|consen 16 MQNMSGFVLGATGLCGGGLLKHAQEA-PQFSKVYAILRRELP-------------------------------------- 56 (238)
T ss_pred hhccceEEEeccccccHHHHHHHHhc-ccceeEEEEEeccCC--------------------------------------
Confidence 35789999999999999999999999 589999999998532
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTIL 205 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll 205 (366)
.+...+.+.....|....+ ++...+.+.|+.+.+-|........+.++++.-.-...+.
T Consensus 57 ---------------d~at~k~v~q~~vDf~Kl~------~~a~~~qg~dV~FcaLgTTRgkaGadgfykvDhDyvl~~A 115 (238)
T KOG4039|consen 57 ---------------DPATDKVVAQVEVDFSKLS------QLATNEQGPDVLFCALGTTRGKAGADGFYKVDHDYVLQLA 115 (238)
T ss_pred ---------------CccccceeeeEEechHHHH------HHHhhhcCCceEEEeecccccccccCceEeechHHHHHHH
Confidence 2223356677778887655 5666666899999999886544445556777777777888
Q ss_pred HHHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHH
Q psy17528 206 ALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVR 285 (366)
Q Consensus 206 ~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~ 285 (366)
+++++. ++++|+.+||.+...+. ...|...|-+.|+-+.
T Consensus 116 ~~AKe~-Gck~fvLvSS~GAd~sS----------------------------------------rFlY~k~KGEvE~~v~ 154 (238)
T KOG4039|consen 116 QAAKEK-GCKTFVLVSSAGADPSS----------------------------------------RFLYMKMKGEVERDVI 154 (238)
T ss_pred HHHHhC-CCeEEEEEeccCCCccc----------------------------------------ceeeeeccchhhhhhh
Confidence 899886 99999999998764222 1579999999999998
Q ss_pred HhcCCCCEEEEecCccccCCCCCCCc
Q psy17528 286 QVGHELPICVLRPSIVFPTLQEPMPL 311 (366)
Q Consensus 286 ~~~~gl~~~ilRp~~v~G~~~~~~~~ 311 (366)
+.. =-.+.|+|||.+.|.+.+..++
T Consensus 155 eL~-F~~~~i~RPG~ll~~R~esr~g 179 (238)
T KOG4039|consen 155 ELD-FKHIIILRPGPLLGERTESRQG 179 (238)
T ss_pred hcc-ccEEEEecCcceeccccccccc
Confidence 875 2357999999999988765433
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.4e-11 Score=123.50 Aligned_cols=164 Identities=15% Similarity=0.214 Sum_probs=119.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
.++++++||||++.||.+++++|.+.| .+|+++.|+.+. +.+.. .
T Consensus 3 ~~~k~~lITGas~gIG~aia~~l~~~G---~~V~~~~r~~~~------~~~~~---------~----------------- 47 (520)
T PRK06484 3 AQSRVVLVTGAAGGIGRAACQRFARAG---DQVVVADRNVER------ARERA---------D----------------- 47 (520)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHH------HHHHH---------H-----------------
Confidence 357899999999999999999999998 889999987432 11110 0
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC---------hhhh
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR---------FDEH 189 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~---------~~~~ 189 (366)
....++.++.+|+++++ .+..+++ .+|++|||||... ....
T Consensus 48 -----------------~~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~g~iD~li~nag~~~~~~~~~~~~~~~~ 104 (520)
T PRK06484 48 -----------------SLGPDHHALAMDVSDEA------QIREGFEQLHREFGRIDVLVNNAGVTDPTMTATLDTTLEE 104 (520)
T ss_pred -----------------HhCCceeEEEeccCCHH------HHHHHHHHHHHHhCCCCEEEECCCcCCCCCcccccCCHHH
Confidence 01235677899999876 5555543 5899999998621 1245
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc---CCC-cEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcc
Q psy17528 190 IRTAYNINVKGTQTILALAKRM---KGL-KSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHI 265 (366)
Q Consensus 190 ~~~~~~~nv~~~~~ll~~a~~~---~~~-~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (366)
++..+++|+.++..+.+++.+. .+. .++|++||.......
T Consensus 105 ~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~~~~------------------------------------ 148 (520)
T PRK06484 105 FARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGLVAL------------------------------------ 148 (520)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccCCCC------------------------------------
Confidence 6778999999998888766542 122 389999997554211
Q ss_pred cCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCC
Q psy17528 266 IGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTL 305 (366)
Q Consensus 266 ~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~ 305 (366)
+....|+.+|...+.+++... ++++++.+.||.|..+.
T Consensus 149 --~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~i~Pg~v~t~~ 191 (520)
T PRK06484 149 --PKRTAYSASKAAVISLTRSLACEWAAKGIRVNAVLPGYVRTQM 191 (520)
T ss_pred --CCCchHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCcCchh
Confidence 112679999999999887655 68999999999887654
|
|
| >KOG2774|consensus | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.6e-11 Score=113.28 Aligned_cols=225 Identities=16% Similarity=0.102 Sum_probs=154.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
.+..+|||||+-|.+|..++..|... ++-..|++.+--..+.
T Consensus 42 ~~~PrvLITG~LGQLG~~~A~LLR~~-yGs~~VILSDI~KPp~------------------------------------- 83 (366)
T KOG2774|consen 42 QKAPRVLITGSLGQLGRGLASLLRYM-YGSECVILSDIVKPPA------------------------------------- 83 (366)
T ss_pred CCCCeEEEecchHHHhHHHHHHHHHH-hCCccEehhhccCCch-------------------------------------
Confidence 34578999999999999999888766 4555666654433221
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccC-h-hhhHHHHHHHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVR-F-DEHIRTAYNINVKGT 201 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~-~-~~~~~~~~~~nv~~~ 201 (366)
+..+.-.++..|+-|.. .+++++- .+|++||..+..+ + +.+..-+.++|+.|.
T Consensus 84 -----------------~V~~~GPyIy~DILD~K------~L~eIVVn~RIdWL~HfSALLSAvGE~NVpLA~~VNI~Gv 140 (366)
T KOG2774|consen 84 -----------------NVTDVGPYIYLDILDQK------SLEEIVVNKRIDWLVHFSALLSAVGETNVPLALQVNIRGV 140 (366)
T ss_pred -----------------hhcccCCchhhhhhccc------cHHHhhcccccceeeeHHHHHHHhcccCCceeeeecchhh
Confidence 11233347778888776 5666663 6899999988643 2 233455678899999
Q ss_pred HHHHHHHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHH
Q psy17528 202 QTILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAE 281 (366)
Q Consensus 202 ~~ll~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E 281 (366)
.++++.+++. ++ ++...||.+++|+..|-...+.. -+......||.||..+|
T Consensus 141 HNil~vAa~~-kL-~iFVPSTIGAFGPtSPRNPTPdl--------------------------tIQRPRTIYGVSKVHAE 192 (366)
T KOG2774|consen 141 HNILQVAAKH-KL-KVFVPSTIGAFGPTSPRNPTPDL--------------------------TIQRPRTIYGVSKVHAE 192 (366)
T ss_pred hHHHHHHHHc-Ce-eEeecccccccCCCCCCCCCCCe--------------------------eeecCceeechhHHHHH
Confidence 9999999985 44 56678888988865532111111 11222389999999999
Q ss_pred HHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHH
Q psy17528 282 DLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAW 359 (366)
Q Consensus 282 ~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~ 359 (366)
-+-+-+. .|+++..+|.+.++.... |.++-.+ ...+....+++......+..++...++.|..|+-.+++.++.
T Consensus 193 L~GEy~~hrFg~dfr~~rfPg~is~~~-pgggttd---ya~A~f~~Al~~gk~tCylrpdtrlpmmy~~dc~~~~~~~~~ 268 (366)
T KOG2774|consen 193 LLGEYFNHRFGVDFRSMRFPGIISATK-PGGGTTD---YAIAIFYDALQKGKHTCYLRPDTRLPMMYDTDCMASVIQLLA 268 (366)
T ss_pred HHHHHHHhhcCccceecccCcccccCC-CCCCcch---hHHHHHHHHHHcCCcccccCCCccCceeehHHHHHHHHHHHh
Confidence 8876655 789999999998887532 2233222 124445555644444455567889999999999999998887
Q ss_pred hhhh
Q psy17528 360 YFLF 363 (366)
Q Consensus 360 ~~~~ 363 (366)
.+..
T Consensus 269 a~~~ 272 (366)
T KOG2774|consen 269 ADSQ 272 (366)
T ss_pred CCHH
Confidence 6643
|
|
| >KOG1201|consensus | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.4e-10 Score=107.36 Aligned_cols=199 Identities=14% Similarity=0.112 Sum_probs=135.0
Q ss_pred ccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccc
Q psy17528 42 IQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGI 121 (366)
Q Consensus 42 ~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (366)
-+...++++||||||.+.+|..++.++.++| .++.+.+.+........+. .+.
T Consensus 32 ~~k~v~g~~vLITGgg~GlGr~ialefa~rg---~~~vl~Din~~~~~etv~~-----------~~~------------- 84 (300)
T KOG1201|consen 32 PLKSVSGEIVLITGGGSGLGRLIALEFAKRG---AKLVLWDINKQGNEETVKE-----------IRK------------- 84 (300)
T ss_pred chhhccCCEEEEeCCCchHHHHHHHHHHHhC---CeEEEEeccccchHHHHHH-----------HHh-------------
Confidence 3455678999999999999999999999998 7888888876543221111 000
Q ss_pred ccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------h
Q psy17528 122 THRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------D 187 (366)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~ 187 (366)
. .++..+.+|+++++ ++.+..+ ++|++|||||++.. +
T Consensus 85 ----------------------~-g~~~~y~cdis~~e------ei~~~a~~Vk~e~G~V~ILVNNAGI~~~~~ll~~~d 135 (300)
T KOG1201|consen 85 ----------------------I-GEAKAYTCDISDRE------EIYRLAKKVKKEVGDVDILVNNAGIVTGKKLLDCSD 135 (300)
T ss_pred ----------------------c-CceeEEEecCCCHH------HHHHHHHHHHHhcCCceEEEeccccccCCCccCCCH
Confidence 1 26788999999987 6666553 68999999998742 3
Q ss_pred hhHHHHHHHHHHHHHHHHHH----HHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhh
Q psy17528 188 EHIRTAYNINVKGTQTILAL----AKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNE 263 (366)
Q Consensus 188 ~~~~~~~~~nv~~~~~ll~~----a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 263 (366)
+..+..+++|+.+.....++ +.+. +-.++|-++|..+.....
T Consensus 136 ~ei~k~~~vN~~~~f~t~kaFLP~M~~~-~~GHIV~IaS~aG~~g~~--------------------------------- 181 (300)
T KOG1201|consen 136 EEIQKTFDVNTIAHFWTTKAFLPKMLEN-NNGHIVTIASVAGLFGPA--------------------------------- 181 (300)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhHHHHhc-CCceEEEehhhhcccCCc---------------------------------
Confidence 45577889998876665554 3333 556999999987653221
Q ss_pred cccCCCCchHHHHHHHHHHHHHHhc--------CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeec
Q psy17528 264 HIIGGKPNSYTLTKATAEDLVRQVG--------HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQ 335 (366)
Q Consensus 264 ~~~~~~~~~Y~~sK~~~E~~l~~~~--------~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~ 335 (366)
....|..||..+.-+-+... .+++++.+-|+.+- ++. + .+ .
T Consensus 182 -----gl~~YcaSK~a~vGfhesL~~EL~~~~~~~IktTlv~P~~i~-Tgm------f--------------~~-----~ 230 (300)
T KOG1201|consen 182 -----GLADYCASKFAAVGFHESLSMELRALGKDGIKTTLVCPYFIN-TGM------F--------------DG-----A 230 (300)
T ss_pred -----cchhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEEeeeecc-ccc------c--------------CC-----C
Confidence 12679999997765554433 67888988888765 221 1 11 0
Q ss_pred CCCCcccCcccHHHHHHHHHHHHHhh
Q psy17528 336 TDPNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 336 ~~~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
..-....+.+..+.||+.|+.+++..
T Consensus 231 ~~~~~l~P~L~p~~va~~Iv~ai~~n 256 (300)
T KOG1201|consen 231 TPFPTLAPLLEPEYVAKRIVEAILTN 256 (300)
T ss_pred CCCccccCCCCHHHHHHHHHHHHHcC
Confidence 01123456777777777777776543
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-10 Score=107.49 Aligned_cols=163 Identities=15% Similarity=0.104 Sum_probs=112.0
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||++.||.+++++|.+.| .+|+++.|+.+.. +++.+. +..
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G---~~V~~~~r~~~~l---~~~~~~--------i~~----------------- 51 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLG---ATLILCDQDQSAL---KDTYEQ--------CSA----------------- 51 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCC---CEEEEEcCCHHHH---HHHHHH--------HHh-----------------
Confidence 468999999999999999999999998 7899998875321 111111 101
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH-------h-CcCEEEEcCcccC----h----hhh
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI-------S-QTTIIFHIAATVR----F----DEH 189 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~-------~-~~d~Vih~a~~~~----~----~~~ 189 (366)
...++..+.+|+.+.+ ++..++ . .+|++|||||... + ...
T Consensus 52 ------------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~g~~iD~li~nag~~~~~~~~~~~~~~~ 107 (227)
T PRK08862 52 ------------------LTDNVYSFQLKDFSQE------SIRHLFDAIEQQFNRAPDVLVNNWTSSPLPSLFDEQPSES 107 (227)
T ss_pred ------------------cCCCeEEEEccCCCHH------HHHHHHHHHHHHhCCCCCEEEECCccCCCCCccccCCHHH
Confidence 1235667889998876 555443 2 5899999997421 1 123
Q ss_pred HHHHHHHHHHHHHHHHHHH----HhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcc
Q psy17528 190 IRTAYNINVKGTQTILALA----KRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHI 265 (366)
Q Consensus 190 ~~~~~~~nv~~~~~ll~~a----~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (366)
+...+.+|+.+...+.+.+ .+.+....+|++||..... +
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~------------~------------------------- 150 (227)
T PRK08862 108 FIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVISHDDHQ------------D------------------------- 150 (227)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEecCCCCC------------C-------------------------
Confidence 4456677777766655443 2222245899999854220 0
Q ss_pred cCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccC
Q psy17528 266 IGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPT 304 (366)
Q Consensus 266 ~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~ 304 (366)
...|+.+|...+.+.+... +++.++.+.||.+-..
T Consensus 151 ----~~~Y~asKaal~~~~~~la~el~~~~Irvn~v~PG~i~t~ 190 (227)
T PRK08862 151 ----LTGVESSNALVSGFTHSWAKELTPFNIRVGGVVPSIFSAN 190 (227)
T ss_pred ----cchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcCcCC
Confidence 1579999999998887765 6899999999988776
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.6e-10 Score=107.65 Aligned_cols=198 Identities=18% Similarity=0.108 Sum_probs=115.6
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+++++||||++.||.+++++|++.|. ++|+++.|+... .+.+.+.
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~--~~V~l~~r~~~~---~~~~~~~------------------------------ 47 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGE--WHVIMACRDFLK---AEQAAKS------------------------------ 47 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCC--CEEEEEeCCHHH---HHHHHHH------------------------------
Confidence 67999999999999999999999872 578888887431 1111111
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh--------hhhHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF--------DEHIRT 192 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~--------~~~~~~ 192 (366)
......++.++.+|+++.+ .+..++. .+|++|||||.... ...++.
T Consensus 48 -------------l~~~~~~~~~~~~Dl~~~~------~v~~~~~~~~~~~~~iD~lI~nAG~~~~~~~~~~~~~~~~~~ 108 (314)
T TIGR01289 48 -------------LGMPKDSYTIMHLDLGSLD------SVRQFVQQFRESGRPLDALVCNAAVYFPTAKEPRFTADGFEL 108 (314)
T ss_pred -------------hcCCCCeEEEEEcCCCCHH------HHHHHHHHHHHhCCCCCEEEECCCccccCccccccCHHHHHH
Confidence 0011246778899999876 5554442 58999999996321 134567
Q ss_pred HHHHHHHHHHHHHHHHHh----cC-CCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 193 AYNINVKGTQTILALAKR----MK-GLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 193 ~~~~nv~~~~~ll~~a~~----~~-~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
.+++|+.+...+.+.+.+ .+ +..++|++||...+...... . .+++.+..++......... .+ ........
T Consensus 109 ~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~ 183 (314)
T TIGR01289 109 SVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAG--N-VPPKANLGDLSGLAAGFKA-PI-AMIDGKEF 183 (314)
T ss_pred HHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecCccccccCCC--c-CCCcccccccccccccCCC-cc-cccCCCCc
Confidence 889999998777665443 21 13699999998665321000 0 0000000000000000000 00 00000000
Q ss_pred CCCchHHHHHHHHHHHHHHhc------CCCCEEEEecCccccC
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG------HELPICVLRPSIVFPT 304 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~------~gl~~~ilRp~~v~G~ 304 (366)
.....|+.||+....+.+... .++.++.++||.|..+
T Consensus 184 ~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~T 226 (314)
T TIGR01289 184 KGAKAYKDSKVCNMLTVRELHRRFHDETGITFASLYPGCIADT 226 (314)
T ss_pred chhhhHHHhHHHHHHHHHHHHHHhccCCCeEEEEecCCcccCC
Confidence 112579999999776665443 3788999999999643
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >KOG0725|consensus | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.3e-09 Score=102.71 Aligned_cols=217 Identities=18% Similarity=0.163 Sum_probs=140.9
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++|+++|||++..||.+++++|.+.| .+|++..|+.+..... ...+. .
T Consensus 5 ~l~gkvalVTG~s~GIG~aia~~la~~G---a~v~i~~r~~~~~~~~--~~~~~---------~---------------- 54 (270)
T KOG0725|consen 5 RLAGKVALVTGGSSGIGKAIALLLAKAG---AKVVITGRSEERLEET--AQELG---------G---------------- 54 (270)
T ss_pred cCCCcEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHHHHHHH--HHHHH---------h----------------
Confidence 4679999999999999999999999999 9999999986532111 11100 0
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH--------hCcCEEEEcCcccCh--------hh
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI--------SQTTIIFHIAATVRF--------DE 188 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~--------~~~d~Vih~a~~~~~--------~~ 188 (366)
......++..+.+|+.+.+ +..+++ .+.|++|+|||.... .+
T Consensus 55 ----------------~~~~~~~~~~~~~Dv~~~~------~~~~l~~~~~~~~~GkidiLvnnag~~~~~~~~~~~s~e 112 (270)
T KOG0725|consen 55 ----------------LGYTGGKVLAIVCDVSKEV------DVEKLVEFAVEKFFGKIDILVNNAGALGLTGSILDLSEE 112 (270)
T ss_pred ----------------cCCCCCeeEEEECcCCCHH------HHHHHHHHHHHHhCCCCCEEEEcCCcCCCCCChhhCCHH
Confidence 1111467889999999765 333333 358999999997531 34
Q ss_pred hHHHHHHHHHHH-HHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhc
Q psy17528 189 HIRTAYNINVKG-TQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEH 264 (366)
Q Consensus 189 ~~~~~~~~nv~~-~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 264 (366)
.++..+++|+.| ...+.+.+..+ .+-..++++||........
T Consensus 113 ~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss~~~~~~~~---------------------------------- 158 (270)
T KOG0725|consen 113 VFDKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNISSVAGVGPGP---------------------------------- 158 (270)
T ss_pred HHHHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEeccccccCCC----------------------------------
Confidence 567889999995 55555555432 2445788888875442210
Q ss_pred ccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCC
Q psy17528 265 IIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPN 339 (366)
Q Consensus 265 ~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~ 339 (366)
..+..|+.+|...+++.+... +|+++..+-||.|..+.. ..++.... ...+.... ......
T Consensus 159 ---~~~~~Y~~sK~al~~ltr~lA~El~~~gIRvN~v~PG~i~T~~~--~~~~~~~~--~~~~~~~~-------~~~~~~ 224 (270)
T KOG0725|consen 159 ---GSGVAYGVSKAALLQLTRSLAKELAKHGIRVNSVSPGLVKTSLR--AAGLDDGE--MEEFKEAT-------DSKGAV 224 (270)
T ss_pred ---CCcccchhHHHHHHHHHHHHHHHHhhcCcEEEEeecCcEeCCcc--ccccccch--hhHHhhhh-------cccccc
Confidence 001579999999999998877 799999999999998751 11111000 01111110 000111
Q ss_pred cccCcccHHHHHHHHHHHHHhh
Q psy17528 340 ISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 340 ~~~~~v~vdDva~ai~~~~~~~ 361 (366)
..-.+...+|++.++..++-..
T Consensus 225 p~gr~g~~~eva~~~~fla~~~ 246 (270)
T KOG0725|consen 225 PLGRVGTPEEVAEAAAFLASDD 246 (270)
T ss_pred ccCCccCHHHHHHhHHhhcCcc
Confidence 2344677889999988776543
|
|
| >KOG1208|consensus | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.7e-10 Score=107.32 Aligned_cols=183 Identities=15% Similarity=0.169 Sum_probs=125.1
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcC-HHHHHHHHhhhhhhhhhhhcCCCCCCccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTS-ITQRVYNYFNDAVFDRMRLECPNYADKVDIGIT 122 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (366)
..+++++++|||||+.||.+++++|..+| .+|+...|+..... ..+.|.+
T Consensus 31 ~~~~~~~~vVTGansGIG~eta~~La~~G---a~Vv~~~R~~~~~~~~~~~i~~-------------------------- 81 (314)
T KOG1208|consen 31 IDLSGKVALVTGATSGIGFETARELALRG---AHVVLACRNEERGEEAKEQIQK-------------------------- 81 (314)
T ss_pred ccCCCcEEEEECCCCchHHHHHHHHHhCC---CEEEEEeCCHHHHHHHHHHHHh--------------------------
Confidence 34557999999999999999999999998 99999999863221 1111111
Q ss_pred cccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccChh-----hhH
Q psy17528 123 HRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRFD-----EHI 190 (366)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~~-----~~~ 190 (366)
......+.++.+|+.+.. .+..+.+ ..|++|+|||+.... ...
T Consensus 82 -------------------~~~~~~i~~~~lDLssl~------SV~~fa~~~~~~~~~ldvLInNAGV~~~~~~~t~DG~ 136 (314)
T KOG1208|consen 82 -------------------GKANQKIRVIQLDLSSLK------SVRKFAEEFKKKEGPLDVLINNAGVMAPPFSLTKDGL 136 (314)
T ss_pred -------------------cCCCCceEEEECCCCCHH------HHHHHHHHHHhcCCCccEEEeCcccccCCcccCccch
Confidence 122468889999999987 5666553 569999999986432 235
Q ss_pred HHHHHHHHHHHHHHHHHHH----hcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 191 RTAYNINVKGTQTILALAK----RMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~----~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
+..+++|..|...+.+++. .. ...|+|.+||.......++ ++ . +.+....
T Consensus 137 E~~~~tN~lg~flLt~lLlp~lk~s-~~~RIV~vsS~~~~~~~~~--~~-l----------------~~~~~~~------ 190 (314)
T KOG1208|consen 137 ELTFATNYLGHFLLTELLLPLLKRS-APSRIVNVSSILGGGKIDL--KD-L----------------SGEKAKL------ 190 (314)
T ss_pred hheehhhhHHHHHHHHHHHHHHhhC-CCCCEEEEcCccccCccch--hh-c----------------cchhccC------
Confidence 7788999999777766553 33 3379999999754110000 00 0 0000000
Q ss_pred CCCCchHHHHHHHHHHHHHHhc----CCCCEEEEecCccccCCC
Q psy17528 267 GGKPNSYTLTKATAEDLVRQVG----HELPICVLRPSIVFPTLQ 306 (366)
Q Consensus 267 ~~~~~~Y~~sK~~~E~~l~~~~----~gl~~~ilRp~~v~G~~~ 306 (366)
......|+.||........+.. .|+.+..+.||.|.++.-
T Consensus 191 ~~~~~~Y~~SKla~~l~~~eL~k~l~~~V~~~~~hPG~v~t~~l 234 (314)
T KOG1208|consen 191 YSSDAAYALSKLANVLLANELAKRLKKGVTTYSVHPGVVKTTGL 234 (314)
T ss_pred ccchhHHHHhHHHHHHHHHHHHHHhhcCceEEEECCCcccccce
Confidence 0011359999998888877776 489999999999998743
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.9e-09 Score=94.36 Aligned_cols=199 Identities=15% Similarity=0.068 Sum_probs=133.7
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
|||.|+||+|-+|++++++.+++| +.|++++|+.++..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RG---HeVTAivRn~~K~~--------------------------------------- 38 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRG---HEVTAIVRNASKLA--------------------------------------- 38 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCC---CeeEEEEeChHhcc---------------------------------------
Confidence 589999999999999999999999 99999999975321
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALA 208 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll~~a 208 (366)
..+.+.+++.|+.+++ .+...+.+.|+||..-+......+.. ..+....+++.+
T Consensus 39 ---------------~~~~~~i~q~Difd~~------~~a~~l~g~DaVIsA~~~~~~~~~~~-----~~k~~~~li~~l 92 (211)
T COG2910 39 ---------------ARQGVTILQKDIFDLT------SLASDLAGHDAVISAFGAGASDNDEL-----HSKSIEALIEAL 92 (211)
T ss_pred ---------------ccccceeecccccChh------hhHhhhcCCceEEEeccCCCCChhHH-----HHHHHHHHHHHH
Confidence 1256778999999987 67788899999998876542111111 123356677777
Q ss_pred HhcCCCcEEEEeeCcceec-CccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHH--HHHH
Q psy17528 209 KRMKGLKSFVHVSTAYCNC-DRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAE--DLVR 285 (366)
Q Consensus 209 ~~~~~~~~~v~iSS~~~~~-~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E--~~l~ 285 (366)
+.. ++.|++.++.++... +.. ......|..|+ ..|...+..+| +.++
T Consensus 93 ~~a-gv~RllVVGGAGSL~id~g---~rLvD~p~fP~--------------------------ey~~~A~~~ae~L~~Lr 142 (211)
T COG2910 93 KGA-GVPRLLVVGGAGSLEIDEG---TRLVDTPDFPA--------------------------EYKPEALAQAEFLDSLR 142 (211)
T ss_pred hhc-CCeeEEEEcCccceEEcCC---ceeecCCCCch--------------------------hHHHHHHHHHHHHHHHh
Confidence 776 888999988874432 111 11111222121 34556666666 4444
Q ss_pred HhcCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhhhh
Q psy17528 286 QVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYFLF 363 (366)
Q Consensus 286 ~~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~~ 363 (366)
.. ..++|+.+-|+..|-|+... +-. . +.|.....- ..--++|...|.|-|++--++++..
T Consensus 143 ~~-~~l~WTfvSPaa~f~PGerT--g~y---r---------lggD~ll~n---~~G~SrIS~aDYAiA~lDe~E~~~h 202 (211)
T COG2910 143 AE-KSLDWTFVSPAAFFEPGERT--GNY---R---------LGGDQLLVN---AKGESRISYADYAIAVLDELEKPQH 202 (211)
T ss_pred hc-cCcceEEeCcHHhcCCcccc--Cce---E---------eccceEEEc---CCCceeeeHHHHHHHHHHHHhcccc
Confidence 44 46999999999999886532 111 0 122222221 2334789999999999999988864
|
|
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.6e-09 Score=96.01 Aligned_cols=159 Identities=19% Similarity=0.212 Sum_probs=110.6
Q ss_pred eEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC-CCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR-GSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 50 ~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
+++|||++|.||..+++.|.++| ..+|+++.|+. ......+.+.+ ++.
T Consensus 2 tylitGG~gglg~~la~~La~~~--~~~~il~~r~~~~~~~~~~~i~~---------l~~-------------------- 50 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERG--ARRLILLGRSGAPSAEAEAAIRE---------LES-------------------- 50 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT---SEEEEEESSGGGSTTHHHHHHH---------HHH--------------------
T ss_pred EEEEECCccHHHHHHHHHHHHcC--CCEEEEeccCCCccHHHHHHHHH---------HHh--------------------
Confidence 68999999999999999999996 47999999984 22222222222 211
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIRTAY 194 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~~~~ 194 (366)
...++.++.+|++|++ ++.+++. .++.|||+|+.... ....+..+
T Consensus 51 ---------------~g~~v~~~~~Dv~d~~------~v~~~~~~~~~~~~~i~gVih~ag~~~~~~~~~~t~~~~~~~~ 109 (181)
T PF08659_consen 51 ---------------AGARVEYVQCDVTDPE------AVAAALAQLRQRFGPIDGVIHAAGVLADAPIQDQTPDEFDAVL 109 (181)
T ss_dssp ---------------TT-EEEEEE--TTSHH------HHHHHHHTSHTTSS-EEEEEE-------B-GCC--HHHHHHHH
T ss_pred ---------------CCCceeeeccCccCHH------HHHHHHHHHHhccCCcceeeeeeeeecccccccCCHHHHHHHH
Confidence 1458899999999987 7877775 35889999997531 23456677
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEeeCccee-cCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchH
Q psy17528 195 NINVKGTQTILALAKRMKGLKSFVHVSTAYCN-CDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSY 273 (366)
Q Consensus 195 ~~nv~~~~~ll~~a~~~~~~~~~v~iSS~~~~-~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 273 (366)
...+.+..++.++.... .+..||.+||.... +.. ....|
T Consensus 110 ~~Kv~g~~~L~~~~~~~-~l~~~i~~SSis~~~G~~---------------------------------------gq~~Y 149 (181)
T PF08659_consen 110 APKVRGLWNLHEALENR-PLDFFILFSSISSLLGGP---------------------------------------GQSAY 149 (181)
T ss_dssp HHHHHHHHHHHHHHTTT-TTSEEEEEEEHHHHTT-T---------------------------------------TBHHH
T ss_pred hhhhhHHHHHHHHhhcC-CCCeEEEECChhHhccCc---------------------------------------chHhH
Confidence 88899999999988774 88899999998543 221 11679
Q ss_pred HHHHHHHHHHHHHhc-CCCCEEEEecCc
Q psy17528 274 TLTKATAEDLVRQVG-HELPICVLRPSI 300 (366)
Q Consensus 274 ~~sK~~~E~~l~~~~-~gl~~~ilRp~~ 300 (366)
.......+.+..... .+.++..|..+.
T Consensus 150 aaAN~~lda~a~~~~~~g~~~~sI~wg~ 177 (181)
T PF08659_consen 150 AAANAFLDALARQRRSRGLPAVSINWGA 177 (181)
T ss_dssp HHHHHHHHHHHHHHHHTTSEEEEEEE-E
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEccc
Confidence 999999999887766 788888887553
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.6e-09 Score=102.47 Aligned_cols=195 Identities=15% Similarity=0.104 Sum_probs=110.6
Q ss_pred EEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccccch
Q psy17528 52 FITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNYFND 131 (366)
Q Consensus 52 lItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (366)
+||||++.||.+++++|++.|. ++|++..|+... .+.+.+.
T Consensus 1 lITGas~GIG~aia~~l~~~G~--~~V~~~~r~~~~---~~~~~~~---------------------------------- 41 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGK--WHVVMACRDFLK---AERAAKS---------------------------------- 41 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCC--CEEEEEeCCHHH---HHHHHHH----------------------------------
Confidence 6999999999999999999972 578888886421 1111111
Q ss_pred hhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh--------hhhHHHHHHH
Q psy17528 132 AVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF--------DEHIRTAYNI 196 (366)
Q Consensus 132 ~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~--------~~~~~~~~~~ 196 (366)
......++.++.+|+.+.+ .+..++. .+|++|||||.... ...++..+++
T Consensus 42 ---------l~~~~~~~~~~~~Dl~d~~------~v~~~~~~~~~~~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~v 106 (308)
T PLN00015 42 ---------AGMPKDSYTVMHLDLASLD------SVRQFVDNFRRSGRPLDVLVCNAAVYLPTAKEPTFTADGFELSVGT 106 (308)
T ss_pred ---------hcCCCCeEEEEEecCCCHH------HHHHHHHHHHhcCCCCCEEEECCCcCCCCCCcCCCCHHHHHHHHHH
Confidence 1111246778899999876 5555443 57999999997421 2345778999
Q ss_pred HHHHHHHHHHHHHhc---CC--CcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchH-HHHhhhhcccCCCC
Q psy17528 197 NVKGTQTILALAKRM---KG--LKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDE-EIALLNEHIIGGKP 270 (366)
Q Consensus 197 nv~~~~~ll~~a~~~---~~--~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 270 (366)
|+.++..+.+.+.+. .+ ..++|++||...+.... .....+. .+-..+.......... ....... ......
T Consensus 107 N~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 182 (308)
T PLN00015 107 NHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGNTNTL--AGNVPPK-ANLGDLRGLAGGLNGLNSSAMIDG-GEFDGA 182 (308)
T ss_pred HhHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccc--cccCCCc-cchhhhhhhhcccCCccchhhccc-cCCcHH
Confidence 999977776654331 12 46899999986542100 0000000 0000000000000000 0000000 000112
Q ss_pred chHHHHHHHHHHHHHHhc------CCCCEEEEecCccccC
Q psy17528 271 NSYTLTKATAEDLVRQVG------HELPICVLRPSIVFPT 304 (366)
Q Consensus 271 ~~Y~~sK~~~E~~l~~~~------~gl~~~ilRp~~v~G~ 304 (366)
..|+.||+..+.+.+... .++.++.+.||.|..+
T Consensus 183 ~aY~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t 222 (308)
T PLN00015 183 KAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATT 222 (308)
T ss_pred HHHhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCc
Confidence 579999998666544332 3799999999999643
|
|
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.6e-09 Score=95.86 Aligned_cols=169 Identities=14% Similarity=0.219 Sum_probs=115.7
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++|+||||++.||..++++|.+.| ++|+++.|..... ..+.+.+... .
T Consensus 3 ~~~~~ilITGas~GiG~aia~~l~~~G---~~v~~~~~~~~~~-~~~~~~~~~~-------~------------------ 53 (251)
T COG1028 3 LSGKVALVTGASSGIGRAIARALAREG---ARVVVAARRSEEE-AAEALAAAIK-------E------------------ 53 (251)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CeEEEEcCCCchh-hHHHHHHHHH-------h------------------
Confidence 468999999999999999999999988 8888888875431 1111111100 0
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCc-CCCCCCHHHHHHHHh-------CcCEEEEcCcccC----h----hhh
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEA-DTFGLSARDEELLIS-------QTTIIFHIAATVR----F----DEH 189 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~-~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~----~----~~~ 189 (366)
... ..+.+...|+++ .+ .+..+++ .+|++|||||... . ...
T Consensus 54 ---------------~~~--~~~~~~~~Dvs~~~~------~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~ 110 (251)
T COG1028 54 ---------------AGG--GRAAAVAADVSDDEE------SVEALVAAAEEEFGRIDILVNNAGIAGPDAPLEELTEED 110 (251)
T ss_pred ---------------cCC--CcEEEEEecCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCChhhCCHHH
Confidence 000 357778899997 44 4443332 4899999999742 1 245
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCC
Q psy17528 190 IRTAYNINVKGTQTILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGK 269 (366)
Q Consensus 190 ~~~~~~~nv~~~~~ll~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (366)
++..+++|+.+...+.+.+......+++|.+||.... ...+.
T Consensus 111 ~~~~~~~n~~g~~~~~~~~~~~~~~~~Iv~isS~~~~-~~~~~------------------------------------- 152 (251)
T COG1028 111 WDRVIDVNLLGAFLLTRAALPLMKKQRIVNISSVAGL-GGPPG------------------------------------- 152 (251)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhhhCeEEEECCchhc-CCCCC-------------------------------------
Confidence 6788999999888887744432111289999998654 32110
Q ss_pred CchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccC
Q psy17528 270 PNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPT 304 (366)
Q Consensus 270 ~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~ 304 (366)
...|+.+|...+.+.+... +|+.++.+.||.+-.+
T Consensus 153 ~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~PG~~~t~ 192 (251)
T COG1028 153 QAAYAASKAALIGLTKALALELAPRGIRVNAVAPGYIDTP 192 (251)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeccCCCc
Confidence 1679999999888776655 6899999999955533
|
|
| >KOG1611|consensus | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.5e-09 Score=95.32 Aligned_cols=172 Identities=17% Similarity=0.234 Sum_probs=116.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
|..++|+||||+..||..|+++|++. .++..++...|+.+.. .+.+..
T Consensus 1 Mspksv~ItGaNRGIGlgLVk~llk~-~~i~~iiat~r~~e~a--~~~l~~----------------------------- 48 (249)
T KOG1611|consen 1 MSPKSVFITGANRGIGLGLVKELLKD-KGIEVIIATARDPEKA--ATELAL----------------------------- 48 (249)
T ss_pred CCCccEEEeccCcchhHHHHHHHhcC-CCcEEEEEecCChHHh--hHHHHH-----------------------------
Confidence 45678999999999999999999988 5777777777765432 111111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh---------CcCEEEEcCcccCh--------hh
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS---------QTTIIFHIAATVRF--------DE 188 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~---------~~d~Vih~a~~~~~--------~~ 188 (366)
.....+++.++..|+++.+ .+..++. +.+++|+|||+... ..
T Consensus 49 ---------------k~~~d~rvHii~Ldvt~de------S~~~~~~~V~~iVg~~GlnlLinNaGi~~~y~~~~~~~r~ 107 (249)
T KOG1611|consen 49 ---------------KSKSDSRVHIIQLDVTCDE------SIDNFVQEVEKIVGSDGLNLLINNAGIALSYNTVLKPSRA 107 (249)
T ss_pred ---------------hhccCCceEEEEEecccHH------HHHHHHHHHHhhcccCCceEEEeccceeeecccccCCcHH
Confidence 1123479999999999876 4544442 67999999997521 22
Q ss_pred hHHHHHHHHHHHHHHHHHHH----Hhc----------CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcc
Q psy17528 189 HIRTAYNINVKGTQTILALA----KRM----------KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHAS 254 (366)
Q Consensus 189 ~~~~~~~~nv~~~~~ll~~a----~~~----------~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~ 254 (366)
.+...+++|+.++..+.+.. ++. .....+|++||........ .+.+
T Consensus 108 ~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS~~~s~~~~------~~~~-------------- 167 (249)
T KOG1611|consen 108 VLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISSSAGSIGGF------RPGG-------------- 167 (249)
T ss_pred HHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeeccccccCCC------CCcc--------------
Confidence 35668888987766554432 222 0112588888875442211 1111
Q ss_pred hHHHHhhhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCC
Q psy17528 255 DEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTL 305 (366)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~ 305 (366)
...|..||...-.+.+..+ .++-++.+.||+|-..-
T Consensus 168 ---------------~~AYrmSKaAlN~f~ksls~dL~~~~ilv~sihPGwV~TDM 208 (249)
T KOG1611|consen 168 ---------------LSAYRMSKAALNMFAKSLSVDLKDDHILVVSIHPGWVQTDM 208 (249)
T ss_pred ---------------hhhhHhhHHHHHHHHHHhhhhhcCCcEEEEEecCCeEEcCC
Confidence 1789999999999998887 55667888999987653
|
|
| >KOG1200|consensus | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.1e-08 Score=90.57 Aligned_cols=203 Identities=14% Similarity=0.162 Sum_probs=132.1
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
+..+.+.++||||+..||.+++..|.+.| .+|.+.+++........ ..
T Consensus 10 ~r~~sk~~~vtGg~sGIGrAia~~la~~G---arv~v~dl~~~~A~ata---~~-------------------------- 57 (256)
T KOG1200|consen 10 QRLMSKVAAVTGGSSGIGRAIAQLLAKKG---ARVAVADLDSAAAEATA---GD-------------------------- 57 (256)
T ss_pred HHHhcceeEEecCCchHHHHHHHHHHhcC---cEEEEeecchhhHHHHH---hh--------------------------
Confidence 44557899999999999999999999999 88888888755322111 11
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhh
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEH 189 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~ 189 (366)
.+.+ .+-..+.+|..+.. ++...++ .++++++|||+.. ..++
T Consensus 58 -----------------L~g~-~~h~aF~~DVS~a~------~v~~~l~e~~k~~g~psvlVncAGItrD~~Llrmkq~q 113 (256)
T KOG1200|consen 58 -----------------LGGY-GDHSAFSCDVSKAH------DVQNTLEEMEKSLGTPSVLVNCAGITRDGLLLRMKQEQ 113 (256)
T ss_pred -----------------cCCC-CccceeeeccCcHH------HHHHHHHHHHHhcCCCcEEEEcCccccccceeeccHHH
Confidence 1111 23456788998875 4444332 5799999999864 2467
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc-----CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhc
Q psy17528 190 IRTAYNINVKGTQTILALAKRM-----KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEH 264 (366)
Q Consensus 190 ~~~~~~~nv~~~~~ll~~a~~~-----~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 264 (366)
|.+.+.+|..|+...-+++.+. ....++|.+||.-+.-.+-.+
T Consensus 114 wd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIVGkiGN~GQ-------------------------------- 161 (256)
T KOG1200|consen 114 WDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIVGKIGNFGQ-------------------------------- 161 (256)
T ss_pred HHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhhcccccccc--------------------------------
Confidence 8899999999988777665442 233489999997433111100
Q ss_pred ccCCCCchHHHHHHH----HHHHHHHhc-CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCC
Q psy17528 265 IIGGKPNSYTLTKAT----AEDLVRQVG-HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPN 339 (366)
Q Consensus 265 ~~~~~~~~Y~~sK~~----~E~~l~~~~-~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~ 339 (366)
..|+.+|.- .....++.. +++++.++-||+|-.|-...+| ...+.++..+.+.
T Consensus 162 ------tnYAAsK~GvIgftktaArEla~knIrvN~VlPGFI~tpMT~~mp---------~~v~~ki~~~iPm------- 219 (256)
T KOG1200|consen 162 ------TNYAASKGGVIGFTKTAARELARKNIRVNVVLPGFIATPMTEAMP---------PKVLDKILGMIPM------- 219 (256)
T ss_pred ------hhhhhhcCceeeeeHHHHHHHhhcCceEeEeccccccChhhhhcC---------HHHHHHHHccCCc-------
Confidence 345544431 112233333 6899999999999887654332 3344444544332
Q ss_pred cccCcccHHHHHHHHHHHH
Q psy17528 340 ISMDVVPGDRVINAMAALA 358 (366)
Q Consensus 340 ~~~~~v~vdDva~ai~~~~ 358 (366)
.-+-..+++|+.++.++
T Consensus 220 --gr~G~~EevA~~V~fLA 236 (256)
T KOG1200|consen 220 --GRLGEAEEVANLVLFLA 236 (256)
T ss_pred --cccCCHHHHHHHHHHHh
Confidence 23556789999999877
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.2e-09 Score=97.31 Aligned_cols=197 Identities=18% Similarity=0.174 Sum_probs=131.5
Q ss_pred CCc--chHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccccchh
Q psy17528 55 GAT--GFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNYFNDA 132 (366)
Q Consensus 55 Gat--G~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (366)
|++ +.||.+++++|++.| .+|++..|+... ..+.+.++.. +
T Consensus 1 g~~~s~GiG~aia~~l~~~G---a~V~~~~~~~~~--~~~~~~~l~~---------~----------------------- 43 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEG---ANVILTDRNEEK--LADALEELAK---------E----------------------- 43 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTT---EEEEEEESSHHH--HHHHHHHHHH---------H-----------------------
T ss_pred CCCCCCChHHHHHHHHHHCC---CEEEEEeCChHH--HHHHHHHHHH---------H-----------------------
Confidence 666 999999999999999 999999998542 1122222211 1
Q ss_pred hhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH--------hCcCEEEEcCcccCh-----------hhhHHHH
Q psy17528 133 VFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI--------SQTTIIFHIAATVRF-----------DEHIRTA 193 (366)
Q Consensus 133 ~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~--------~~~d~Vih~a~~~~~-----------~~~~~~~ 193 (366)
. ...++.+|+.+.+ .+..++ ..+|++||+++.... ...+...
T Consensus 44 --------~-----~~~~~~~D~~~~~------~v~~~~~~~~~~~~g~iD~lV~~a~~~~~~~~~~~~~~~~~~~~~~~ 104 (241)
T PF13561_consen 44 --------Y-----GAEVIQCDLSDEE------SVEALFDEAVERFGGRIDILVNNAGISPPSNVEKPLLDLSEEDWDKT 104 (241)
T ss_dssp --------T-----TSEEEESCTTSHH------HHHHHHHHHHHHHCSSESEEEEEEESCTGGGTSSSGGGSHHHHHHHH
T ss_pred --------c-----CCceEeecCcchH------HHHHHHHHHHhhcCCCeEEEEecccccccccCCCChHhCCHHHHHHH
Confidence 1 1235999999876 555553 357999999986542 2356778
Q ss_pred HHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCch
Q psy17528 194 YNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNS 272 (366)
Q Consensus 194 ~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (366)
+++|+.+...+++.+.+. ....++|++||....... +....
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~gsii~iss~~~~~~~--------------------------------------~~~~~ 146 (241)
T PF13561_consen 105 FDINVFSPFLLAQAALPLMKKGGSIINISSIAAQRPM--------------------------------------PGYSA 146 (241)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHEEEEEEEEEGGGTSBS--------------------------------------TTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcccccchhhcccC--------------------------------------ccchh
Confidence 889999988888876442 123579999987543111 01168
Q ss_pred HHHHHHHHHHHHHHhc----C--CCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCccc
Q psy17528 273 YTLTKATAEDLVRQVG----H--ELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVP 346 (366)
Q Consensus 273 Y~~sK~~~E~~l~~~~----~--gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~ 346 (366)
|+.+|...+.+.+... + |+++++|.||.|..+... .......+....... ....-+..
T Consensus 147 y~~sKaal~~l~r~lA~el~~~~gIrVN~V~pG~i~t~~~~-------~~~~~~~~~~~~~~~---------~pl~r~~~ 210 (241)
T PF13561_consen 147 YSASKAALEGLTRSLAKELAPKKGIRVNAVSPGPIETPMTE-------RIPGNEEFLEELKKR---------IPLGRLGT 210 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGHGTEEEEEEEESSBSSHHHH-------HHHTHHHHHHHHHHH---------STTSSHBE
T ss_pred hHHHHHHHHHHHHHHHHHhccccCeeeeeecccceeccchh-------ccccccchhhhhhhh---------hccCCCcC
Confidence 9999999999998766 4 899999999998865311 011111222222211 11233678
Q ss_pred HHHHHHHHHHHHHhh
Q psy17528 347 GDRVINAMAALAWYF 361 (366)
Q Consensus 347 vdDva~ai~~~~~~~ 361 (366)
.+|+|++++.++...
T Consensus 211 ~~evA~~v~fL~s~~ 225 (241)
T PF13561_consen 211 PEEVANAVLFLASDA 225 (241)
T ss_dssp HHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHHhCcc
Confidence 999999999988765
|
... |
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=99.00 E-value=1e-08 Score=122.08 Aligned_cols=202 Identities=13% Similarity=0.109 Sum_probs=125.6
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCc--------CHHHHHHHHhhhhhhhhhhhc----CCC
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGST--------SITQRVYNYFNDAVFDRMRLE----CPN 112 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~--------~~~~~i~~~~~~~~~~~~~~~----~~~ 112 (366)
.-+++++|||||+|.||..++++|.++| + .+|+++.|+.... .....+++.. .+.++.. .+.
T Consensus 1994 l~~g~vvLVTGGarGIG~aiA~~LA~~~-g-a~viL~gRs~~~~~~p~~a~~~~~~~lk~~~----~~~l~~~g~~~~P~ 2067 (2582)
T TIGR02813 1994 LNSDDVFLVTGGAKGVTFECALELAKQC-Q-AHFILAGRSSFDDNEPSWAQGKDENELKKAA----IQHLQASGEKPTPK 2067 (2582)
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHhc-C-CEEEEEeCCcccccCchhhhccchHHHHHhh----hhhhhhcccccccc
Confidence 4468999999999999999999999883 2 6899999983110 0011111111 1111100 000
Q ss_pred CCCccccccccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh------CcCEEEEcCcccC-
Q psy17528 113 YADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS------QTTIIFHIAATVR- 185 (366)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~------~~d~Vih~a~~~~- 185 (366)
.+++....+... --..++... ......++.++.+|++|.+ .+..++. .+|.|||+||...
T Consensus 2068 ~i~~~~~~~~~~---~ei~~~la~----l~~~G~~v~y~~~DVtD~~------av~~av~~v~~~g~IDgVVhnAGv~~~ 2134 (2582)
T TIGR02813 2068 KVDALVRPVLSS---LEIAQALAA----FKAAGASAEYASADVTNSV------SVAATVQPLNKTLQITGIIHGAGVLAD 2134 (2582)
T ss_pred hhhhcccccchh---HHHHHHHHH----HHhcCCcEEEEEccCCCHH------HHHHHHHHHHHhCCCcEEEECCccCCC
Confidence 000000000000 000000000 1122457889999999986 5665553 4899999999743
Q ss_pred ------hhhhHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHH
Q psy17528 186 ------FDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIA 259 (366)
Q Consensus 186 ------~~~~~~~~~~~nv~~~~~ll~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~ 259 (366)
....++..+++|+.|+.++++.+... ..++||++||..++....
T Consensus 2135 ~~i~~~t~e~f~~v~~~nv~G~~~Ll~al~~~-~~~~IV~~SSvag~~G~~----------------------------- 2184 (2582)
T TIGR02813 2135 KHIQDKTLEEFNAVYGTKVDGLLSLLAALNAE-NIKLLALFSSAAGFYGNT----------------------------- 2184 (2582)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEechhhcCCCC-----------------------------
Confidence 23467789999999999999988765 567899999986542211
Q ss_pred hhhhcccCCCCchHHHHHHHHHHHHHHhc---CCCCEEEEecCccccC
Q psy17528 260 LLNEHIIGGKPNSYTLTKATAEDLVRQVG---HELPICVLRPSIVFPT 304 (366)
Q Consensus 260 ~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~---~gl~~~ilRp~~v~G~ 304 (366)
....|+.+|...+.+.+... .+++++.+.||.+-|.
T Consensus 2185 ---------gqs~YaaAkaaL~~la~~la~~~~~irV~sI~wG~wdtg 2223 (2582)
T TIGR02813 2185 ---------GQSDYAMSNDILNKAALQLKALNPSAKVMSFNWGPWDGG 2223 (2582)
T ss_pred ---------CcHHHHHHHHHHHHHHHHHHHHcCCcEEEEEECCeecCC
Confidence 01579999998888776665 4688899999887664
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >KOG4169|consensus | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.6e-09 Score=99.78 Aligned_cols=165 Identities=16% Similarity=0.182 Sum_probs=112.0
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+.+|++++||+.|.||..+.++|+++| -++.++.-+.+.....++++++++
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kg---ik~~~i~~~~En~~a~akL~ai~p-------------------------- 53 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKG---IKVLVIDDSEENPEAIAKLQAINP-------------------------- 53 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcC---chheeehhhhhCHHHHHHHhccCC--------------------------
Confidence 358999999999999999999999997 444444444333223333333322
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccChhhhHHHHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRFDEHIRTAYNINV 198 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~~~~~~~~~~~nv 198 (366)
..++.|+.+|+++.. +++++++ .+|++||.||+.. +.+++..+.+|.
T Consensus 54 -------------------~~~v~F~~~DVt~~~------~~~~~f~ki~~~fg~iDIlINgAGi~~-dkd~e~Ti~vNL 107 (261)
T KOG4169|consen 54 -------------------SVSVIFIKCDVTNRG------DLEAAFDKILATFGTIDILINGAGILD-DKDWERTINVNL 107 (261)
T ss_pred -------------------CceEEEEEeccccHH------HHHHHHHHHHHHhCceEEEEccccccc-chhHHHhhccch
Confidence 368899999999976 6766665 5799999999865 666788888886
Q ss_pred HH----HHHHHHHHHhc--CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCch
Q psy17528 199 KG----TQTILALAKRM--KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNS 272 (366)
Q Consensus 199 ~~----~~~ll~~a~~~--~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (366)
.| +...+....+. +...-+|.+||.++.- |-|. -..
T Consensus 108 tgvin~T~~alpyMdk~~gG~GGiIvNmsSv~GL~----------P~p~----------------------------~pV 149 (261)
T KOG4169|consen 108 TGVINGTQLALPYMDKKQGGKGGIIVNMSSVAGLD----------PMPV----------------------------FPV 149 (261)
T ss_pred hhhhhhhhhhhhhhhhhcCCCCcEEEEeccccccC----------cccc----------------------------chh
Confidence 65 44455555443 2334588899987652 2222 145
Q ss_pred HHHHHHHHHHHHHHhc-------CCCCEEEEecCcccc
Q psy17528 273 YTLTKATAEDLVRQVG-------HELPICVLRPSIVFP 303 (366)
Q Consensus 273 Y~~sK~~~E~~l~~~~-------~gl~~~ilRp~~v~G 303 (366)
|+.||+-.-.+-+... .|+.+..+.||.+-.
T Consensus 150 Y~AsKaGVvgFTRSla~~ayy~~sGV~~~avCPG~t~t 187 (261)
T KOG4169|consen 150 YAASKAGVVGFTRSLADLAYYQRSGVRFNAVCPGFTRT 187 (261)
T ss_pred hhhcccceeeeehhhhhhhhHhhcCEEEEEECCCcchH
Confidence 8888775444333322 489999999998654
|
|
| >PLN02730 enoyl-[acyl-carrier-protein] reductase | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.6e-08 Score=96.95 Aligned_cols=226 Identities=12% Similarity=0.015 Sum_probs=129.1
Q ss_pred CCCCeEEEeCC--cchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 46 YKDQTIFITGA--TGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 46 ~~~~~ilItGa--tG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
+++|+++|||| +..||.++++.|.+.| .+|++ .|..... +++.......-++..... .
T Consensus 7 l~gk~alITGa~~s~GIG~a~A~~la~~G---a~Vv~-~~~~~~l---~~~~~~~~~~~~~~~~~~--------~----- 66 (303)
T PLN02730 7 LRGKRAFIAGVADDNGYGWAIAKALAAAG---AEILV-GTWVPAL---NIFETSLRRGKFDESRKL--------P----- 66 (303)
T ss_pred CCCCEEEEeCCCCCCcHHHHHHHHHHHCC---CEEEE-EeCcchh---hHHHHhhhccccchhhhc--------c-----
Confidence 78999999999 7999999999999999 88877 6654322 111110000000000000 0
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCC--cCC-CC-----------CCHHHHHHHH-------hCcCEEEEcCc
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLE--ADT-FG-----------LSARDEELLI-------SQTTIIFHIAA 182 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~--~~~-~g-----------l~~~~~~~~~-------~~~d~Vih~a~ 182 (366)
..........+.+|+. +.+ +. -...++..++ ..+|++|||||
T Consensus 67 -----------------~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG 129 (303)
T PLN02730 67 -----------------DGSLMEITKVYPLDAVFDTPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLA 129 (303)
T ss_pred -----------------cccccCcCeeeecceecCccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 0000112346677773 211 00 0001233333 25899999996
Q ss_pred ccC---------hhhhHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhh
Q psy17528 183 TVR---------FDEHIRTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAH 252 (366)
Q Consensus 183 ~~~---------~~~~~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~ 252 (366)
... ....++..+++|+.+...+.+.+... ..-.++|++||....... |.
T Consensus 130 ~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~~~~p~m~~~G~II~isS~a~~~~~----------p~----------- 188 (303)
T PLN02730 130 NGPEVTKPLLETSRKGYLAAISASSYSFVSLLQHFGPIMNPGGASISLTYIASERII----------PG----------- 188 (303)
T ss_pred ccccCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEechhhcCCC----------CC-----------
Confidence 421 12456778999999988888766542 112589999997543111 00
Q ss_pred cchHHHHhhhhcccCCCCchHHHHHHHHHHHHHHhc------CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHH
Q psy17528 253 ASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVG------HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGA 326 (366)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~------~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~ 326 (366)
....|+.+|...+.+.+.+. +++.++.|-||.|-.+.....+. . .......
T Consensus 189 ----------------~~~~Y~asKaAl~~l~~~la~El~~~~gIrVn~V~PG~v~T~~~~~~~~----~---~~~~~~~ 245 (303)
T PLN02730 189 ----------------YGGGMSSAKAALESDTRVLAFEAGRKYKIRVNTISAGPLGSRAAKAIGF----I---DDMIEYS 245 (303)
T ss_pred ----------------CchhhHHHHHHHHHHHHHHHHHhCcCCCeEEEEEeeCCccCchhhcccc----c---HHHHHHH
Confidence 01369999999998887665 37899999999987754321100 0 1111111
Q ss_pred hcCcceeecCCCCcccCcccHHHHHHHHHHHHHhh
Q psy17528 327 GTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 327 ~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
.... + ...+...+|++.++++++...
T Consensus 246 ~~~~-------p--l~r~~~peevA~~~~fLaS~~ 271 (303)
T PLN02730 246 YANA-------P--LQKELTADEVGNAAAFLASPL 271 (303)
T ss_pred HhcC-------C--CCCCcCHHHHHHHHHHHhCcc
Confidence 1110 0 123467899999999988643
|
|
| >KOG1203|consensus | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-08 Score=102.35 Aligned_cols=175 Identities=20% Similarity=0.208 Sum_probs=112.0
Q ss_pred CcccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccc
Q psy17528 40 SPIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDI 119 (366)
Q Consensus 40 ~~~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (366)
.+..+..+..+|||+||||.+|+-+++.|+++| ..|.++.|+..... +++.
T Consensus 71 ~~~~~~~~~~~VlVvGatG~vG~~iv~~llkrg---f~vra~VRd~~~a~------~~~~-------------------- 121 (411)
T KOG1203|consen 71 PPNNNSKKPTTVLVVGATGKVGRRIVKILLKRG---FSVRALVRDEQKAE------DLLG-------------------- 121 (411)
T ss_pred cCCCCCCCCCeEEEecCCCchhHHHHHHHHHCC---CeeeeeccChhhhh------hhhc--------------------
Confidence 334455667899999999999999999999999 88999999865321 1110
Q ss_pred ccccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh----CcCEEEEcCcccChhhhHHHHHH
Q psy17528 120 GITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS----QTTIIFHIAATVRFDEHIRTAYN 195 (366)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~----~~d~Vih~a~~~~~~~~~~~~~~ 195 (366)
..........++.+..... ..+..+.+ ...+++-+++.....++...-.+
T Consensus 122 ---------------------~~~~d~~~~~v~~~~~~~~-----d~~~~~~~~~~~~~~~v~~~~ggrp~~ed~~~p~~ 175 (411)
T KOG1203|consen 122 ---------------------VFFVDLGLQNVEADVVTAI-----DILKKLVEAVPKGVVIVIKGAGGRPEEEDIVTPEK 175 (411)
T ss_pred ---------------------ccccccccceeeecccccc-----chhhhhhhhccccceeEEecccCCCCcccCCCcce
Confidence 0111233444444443322 02333333 23466666665433322222345
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHH
Q psy17528 196 INVKGTQTILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTL 275 (366)
Q Consensus 196 ~nv~~~~~ll~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~ 275 (366)
+...|+++++++|+.+ +++|++++|+..+..... .+. ... . -..+..
T Consensus 176 VD~~g~knlvdA~~~a-Gvk~~vlv~si~~~~~~~--------~~~-~~~----------------------~-~~~~~~ 222 (411)
T KOG1203|consen 176 VDYEGTKNLVDACKKA-GVKRVVLVGSIGGTKFNQ--------PPN-ILL----------------------L-NGLVLK 222 (411)
T ss_pred ecHHHHHHHHHHHHHh-CCceEEEEEeecCcccCC--------Cch-hhh----------------------h-hhhhhH
Confidence 6788999999999988 999999998876542221 110 000 0 034558
Q ss_pred HHHHHHHHHHHhcCCCCEEEEecCccccC
Q psy17528 276 TKATAEDLVRQVGHELPICVLRPSIVFPT 304 (366)
Q Consensus 276 sK~~~E~~l~~~~~gl~~~ilRp~~v~G~ 304 (366)
+|+.+|+++.+. +++.+||||+...-.
T Consensus 223 ~k~~~e~~~~~S--gl~ytiIR~g~~~~~ 249 (411)
T KOG1203|consen 223 AKLKAEKFLQDS--GLPYTIIRPGGLEQD 249 (411)
T ss_pred HHHhHHHHHHhc--CCCcEEEeccccccC
Confidence 899999999976 799999999976543
|
|
| >PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-08 Score=95.39 Aligned_cols=176 Identities=13% Similarity=0.049 Sum_probs=104.8
Q ss_pred EEeccCCcCCCCCCHHHHHHHHh----CcCEEEEcCcccChhhhHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcc
Q psy17528 150 IVCGQLEADTFGLSARDEELLIS----QTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAY 224 (366)
Q Consensus 150 ~~~gDl~~~~~gl~~~~~~~~~~----~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~ 224 (366)
++.+|+++.+ ++.++++ ++|+||||||... ...++..+++|+.++..+++.+.+. ....+||++||..
T Consensus 27 ~~~~Dl~~~~------~v~~~~~~~~~~iD~li~nAG~~~-~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~isS~~ 99 (241)
T PRK12428 27 FIQADLGDPA------SIDAAVAALPGRIDALFNIAGVPG-TAPVELVARVNFLGLRHLTEALLPRMAPGGAIVNVASLA 99 (241)
T ss_pred hhcccCCCHH------HHHHHHHHhcCCCeEEEECCCCCC-CCCHHHhhhhchHHHHHHHHHHHHhccCCcEEEEeCcHH
Confidence 5688998876 6666665 5899999999753 3457788999999999999987653 2236999999997
Q ss_pred eecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHHh-----c-CCCCEEEE
Q psy17528 225 CNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQV-----G-HELPICVL 296 (366)
Q Consensus 225 ~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~-----~-~gl~~~il 296 (366)
+++... +..+... +....+.........+.+....|+.+|...+.+.+.. . +|+.++++
T Consensus 100 ~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~e~~~~girvn~v 166 (241)
T PRK12428 100 GAEWPQRLELHKALA-------------ATASFDEGAAWLAAHPVALATGYQLSKEALILWTMRQAQPWFGARGIRVNCV 166 (241)
T ss_pred hhccccchHHHHhhh-------------ccchHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHhhhccCeEEEEe
Confidence 764211 0000000 0000000000000001122378999999998877543 2 68999999
Q ss_pred ecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhh
Q psy17528 297 RPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 297 Rp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
+||.|.++..... ..... ..... . . . .....+...+|+|++++.++...
T Consensus 167 ~PG~v~T~~~~~~---~~~~~--~~~~~---~-~----~---~~~~~~~~pe~va~~~~~l~s~~ 215 (241)
T PRK12428 167 APGPVFTPILGDF---RSMLG--QERVD---S-D----A---KRMGRPATADEQAAVLVFLCSDA 215 (241)
T ss_pred ecCCccCcccccc---hhhhh--hHhhh---h-c----c---cccCCCCCHHHHHHHHHHHcChh
Confidence 9999988743211 00000 00000 0 0 0 01123567899999999887543
|
|
| >KOG1610|consensus | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.6e-08 Score=94.14 Aligned_cols=164 Identities=17% Similarity=0.204 Sum_probs=117.8
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
+...++.|||||+-...|..++++|.+.| ..|.+..-.++. ++.+...
T Consensus 25 ~~~~~k~VlITGCDSGfG~~LA~~L~~~G---f~V~Agcl~~~g---ae~L~~~-------------------------- 72 (322)
T KOG1610|consen 25 DSLSDKAVLITGCDSGFGRLLAKKLDKKG---FRVFAGCLTEEG---AESLRGE-------------------------- 72 (322)
T ss_pred cccCCcEEEEecCCcHHHHHHHHHHHhcC---CEEEEEeecCch---HHHHhhh--------------------------
Confidence 34457899999999999999999999999 788887754332 2222211
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh---------CcCEEEEcCcccCh--------
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS---------QTTIIFHIAATVRF-------- 186 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~---------~~d~Vih~a~~~~~-------- 186 (366)
.. .++...++.|+++++ .+.++.+ +.-.||||||+..+
T Consensus 73 -----------------~~--s~rl~t~~LDVT~~e------si~~a~~~V~~~l~~~gLwglVNNAGi~~~~g~~ewl~ 127 (322)
T KOG1610|consen 73 -----------------TK--SPRLRTLQLDVTKPE------SVKEAAQWVKKHLGEDGLWGLVNNAGISGFLGPDEWLT 127 (322)
T ss_pred -----------------hc--CCcceeEeeccCCHH------HHHHHHHHHHHhcccccceeEEeccccccccCcccccc
Confidence 10 367788899999987 5655543 45799999996531
Q ss_pred hhhHHHHHHHHHHHHHHHHHH----HHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhh
Q psy17528 187 DEHIRTAYNINVKGTQTILAL----AKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLN 262 (366)
Q Consensus 187 ~~~~~~~~~~nv~~~~~ll~~----a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 262 (366)
..+++...++|+.|+..+... .++. -.|+|++||..+--. .
T Consensus 128 ~~d~~~~l~vNllG~irvT~~~lpLlr~a--rGRvVnvsS~~GR~~----------~----------------------- 172 (322)
T KOG1610|consen 128 VEDYRKVLNVNLLGTIRVTKAFLPLLRRA--RGRVVNVSSVLGRVA----------L----------------------- 172 (322)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHhc--cCeEEEecccccCcc----------C-----------------------
Confidence 246788999999987776554 4443 349999999865211 1
Q ss_pred hcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCC
Q psy17528 263 EHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTL 305 (366)
Q Consensus 263 ~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~ 305 (366)
+...+|..||+..|.+..... .|+++.+|-|| +|-+.
T Consensus 173 -----p~~g~Y~~SK~aVeaf~D~lR~EL~~fGV~VsiiePG-~f~T~ 214 (322)
T KOG1610|consen 173 -----PALGPYCVSKFAVEAFSDSLRRELRPFGVKVSIIEPG-FFKTN 214 (322)
T ss_pred -----cccccchhhHHHHHHHHHHHHHHHHhcCcEEEEeccC-ccccc
Confidence 112789999999998875544 89999999999 44443
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.5e-07 Score=85.67 Aligned_cols=161 Identities=17% Similarity=0.195 Sum_probs=111.1
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
.+-+||||||+..||..+++++++.| .+|++..|+.. ++.+...
T Consensus 4 tgnTiLITGG~sGIGl~lak~f~elg---N~VIi~gR~e~------~L~e~~~--------------------------- 47 (245)
T COG3967 4 TGNTILITGGASGIGLALAKRFLELG---NTVIICGRNEE------RLAEAKA--------------------------- 47 (245)
T ss_pred cCcEEEEeCCcchhhHHHHHHHHHhC---CEEEEecCcHH------HHHHHHh---------------------------
Confidence 46799999999999999999999999 99999999843 3333221
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh---h------hhH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF---D------EHI 190 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~---~------~~~ 190 (366)
..+.+.-..+|+.|.+ ..++++. ..+++|+|||+... . ...
T Consensus 48 -----------------~~p~~~t~v~Dv~d~~------~~~~lvewLkk~~P~lNvliNNAGIqr~~dlt~~e~~~~~~ 104 (245)
T COG3967 48 -----------------ENPEIHTEVCDVADRD------SRRELVEWLKKEYPNLNVLINNAGIQRNEDLTGAEDLLDDA 104 (245)
T ss_pred -----------------cCcchheeeecccchh------hHHHHHHHHHhhCCchheeeecccccchhhccCCcchhhHH
Confidence 1245566778998876 4444442 57999999998531 1 223
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 191 RTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
.+-+.+|+.++..+.++.... ..-..+|.+||.-++-+.. .
T Consensus 105 ~~eI~~Nl~API~Lt~~~lphl~~q~~a~IInVSSGLafvPm~-----~------------------------------- 148 (245)
T COG3967 105 EQEIATNLLAPIRLTALLLPHLLRQPEATIINVSSGLAFVPMA-----S------------------------------- 148 (245)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCCceEEEeccccccCccc-----c-------------------------------
Confidence 556788998887776655431 2345689999976542211 0
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccC
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPT 304 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~ 304 (366)
.-.|..+|+..+-+-.... .++.+.=+-|+.|-.+
T Consensus 149 --~PvYcaTKAaiHsyt~aLR~Qlk~t~veVIE~~PP~V~t~ 188 (245)
T COG3967 149 --TPVYCATKAAIHSYTLALREQLKDTSVEVIELAPPLVDTT 188 (245)
T ss_pred --cccchhhHHHHHHHHHHHHHHhhhcceEEEEecCCceecC
Confidence 0358888887776654444 4677777888888775
|
|
| >KOG1207|consensus | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.1e-09 Score=93.50 Aligned_cols=207 Identities=17% Similarity=0.197 Sum_probs=138.2
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
.++.++.|++||+.-.||..++..|.+.| .+|+++.|++.. +. .+..+
T Consensus 3 t~laG~~vlvTgagaGIG~~~v~~La~aG---A~ViAvaR~~a~------L~---------sLV~e-------------- 50 (245)
T KOG1207|consen 3 TSLAGVIVLVTGAGAGIGKEIVLSLAKAG---AQVIAVARNEAN------LL---------SLVKE-------------- 50 (245)
T ss_pred ccccceEEEeecccccccHHHHHHHHhcC---CEEEEEecCHHH------HH---------HHHhh--------------
Confidence 45678999999999999999999999999 999999998531 11 12221
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh---CcCEEEEcCcccC---h----hhhHHHH
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS---QTTIIFHIAATVR---F----DEHIRTA 193 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~---~~d~Vih~a~~~~---~----~~~~~~~ 193 (366)
. +..|..+++|+.+.+ .+++++. .+|.+++|||..- + .+..+..
T Consensus 51 -----------------~---p~~I~Pi~~Dls~we------a~~~~l~~v~pidgLVNNAgvA~~~pf~eiT~q~fDr~ 104 (245)
T KOG1207|consen 51 -----------------T---PSLIIPIVGDLSAWE------ALFKLLVPVFPIDGLVNNAGVATNHPFGEITQQSFDRT 104 (245)
T ss_pred -----------------C---CcceeeeEecccHHH------HHHHhhcccCchhhhhccchhhhcchHHHHhHHhhcce
Confidence 2 345889999999865 5666554 4699999999742 1 2344556
Q ss_pred HHHHHHHHHHHHHHHHh----cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCC
Q psy17528 194 YNINVKGTQTILALAKR----MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGK 269 (366)
Q Consensus 194 ~~~nv~~~~~ll~~a~~----~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (366)
+++|+.+...+.+...+ ......+|.+||.... +|++.
T Consensus 105 F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqas~------------R~~~n-------------------------- 146 (245)
T KOG1207|consen 105 FAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQASI------------RPLDN-------------------------- 146 (245)
T ss_pred eeeeeeeeeeHHHHHHHhhhhccCCceEEEecchhcc------------cccCC--------------------------
Confidence 77888887777665333 2233469999997543 11111
Q ss_pred CchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCc
Q psy17528 270 PNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDV 344 (366)
Q Consensus 270 ~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~ 344 (366)
...|..+|...+.+-+... +.+++..+.|..|...-.. ..|.+.- .++.+. +.-...-|
T Consensus 147 HtvYcatKaALDmlTk~lAlELGp~kIRVNsVNPTVVmT~MG~--dnWSDP~----------K~k~mL----~riPl~rF 210 (245)
T KOG1207|consen 147 HTVYCATKAALDMLTKCLALELGPQKIRVNSVNPTVVMTDMGR--DNWSDPD----------KKKKML----DRIPLKRF 210 (245)
T ss_pred ceEEeecHHHHHHHHHHHHHhhCcceeEeeccCCeEEEecccc--cccCCch----------hccchh----hhCchhhh
Confidence 2789999998888776554 7789999999988865321 1222110 011110 11123458
Q ss_pred ccHHHHHHHHHHHHHhhh
Q psy17528 345 VPGDRVINAMAALAWYFL 362 (366)
Q Consensus 345 v~vdDva~ai~~~~~~~~ 362 (366)
..|+.|++|++.++....
T Consensus 211 aEV~eVVnA~lfLLSd~s 228 (245)
T KOG1207|consen 211 AEVDEVVNAVLFLLSDNS 228 (245)
T ss_pred hHHHHHHhhheeeeecCc
Confidence 889999999998776543
|
|
| >KOG1209|consensus | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.1e-08 Score=89.17 Aligned_cols=159 Identities=13% Similarity=0.117 Sum_probs=113.0
Q ss_pred CCeEEEeC-CcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 48 DQTIFITG-ATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 48 ~~~ilItG-atG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
.++||||| +.|.||.+|++++.++| ..|++..|..+.-. .+.
T Consensus 7 ~k~VlItgcs~GGIG~ala~ef~~~G---~~V~AtaR~~e~M~---------------~L~------------------- 49 (289)
T KOG1209|consen 7 PKKVLITGCSSGGIGYALAKEFARNG---YLVYATARRLEPMA---------------QLA------------------- 49 (289)
T ss_pred CCeEEEeecCCcchhHHHHHHHHhCC---eEEEEEccccchHh---------------hHH-------------------
Confidence 57889987 56899999999999999 89999999865311 111
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH---h-----CcCEEEEcCcccC-------hhhhHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI---S-----QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~---~-----~~d~Vih~a~~~~-------~~~~~~ 191 (366)
...++.....|+++++ ++.... . ..|+++||||..- .....+
T Consensus 50 -----------------~~~gl~~~kLDV~~~~------~V~~v~~evr~~~~Gkld~L~NNAG~~C~~Pa~d~~i~ave 106 (289)
T KOG1209|consen 50 -----------------IQFGLKPYKLDVSKPE------EVVTVSGEVRANPDGKLDLLYNNAGQSCTFPALDATIAAVE 106 (289)
T ss_pred -----------------HhhCCeeEEeccCChH------HHHHHHHHHhhCCCCceEEEEcCCCCCcccccccCCHHHHH
Confidence 0145778899999987 444332 2 4699999999641 234567
Q ss_pred HHHHHHHHHHHHHHHHHHhc--CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCC
Q psy17528 192 TAYNINVKGTQTILALAKRM--KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGK 269 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~--~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (366)
.++++|+.|..+.-++.... +....+|.+.|..++-+. ++
T Consensus 107 ~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~vpf--------------------------------------pf 148 (289)
T KOG1209|consen 107 QCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGVVPF--------------------------------------PF 148 (289)
T ss_pred hhhccceeeeehHHHHHHHHHHHccceEEEecceeEEecc--------------------------------------ch
Confidence 89999998866655554432 133489999998766222 22
Q ss_pred CchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccC
Q psy17528 270 PNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPT 304 (366)
Q Consensus 270 ~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~ 304 (366)
...|..||+....+..... .|++++-+-+|.|-..
T Consensus 149 ~~iYsAsKAAihay~~tLrlEl~PFgv~Vin~itGGv~T~ 188 (289)
T KOG1209|consen 149 GSIYSASKAAIHAYARTLRLELKPFGVRVINAITGGVATD 188 (289)
T ss_pred hhhhhHHHHHHHHhhhhcEEeeeccccEEEEecccceecc
Confidence 3789999999998887666 6788887777777543
|
|
| >PRK06300 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.7e-07 Score=87.41 Aligned_cols=136 Identities=10% Similarity=-0.034 Sum_probs=84.5
Q ss_pred CcCEEEEcCcccC-----h----hhhHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCC
Q psy17528 173 QTTIIFHIAATVR-----F----DEHIRTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFT 242 (366)
Q Consensus 173 ~~d~Vih~a~~~~-----~----~~~~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~ 242 (366)
.+|++|||||... + ...++..+++|+.+...+.+++.+. ..-.+++.+||....... |.
T Consensus 119 ~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~a~~p~m~~~G~ii~iss~~~~~~~----------p~- 187 (299)
T PRK06300 119 HIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLLSHFGPIMNPGGSTISLTYLASMRAV----------PG- 187 (299)
T ss_pred CCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCeEEEEeehhhcCcC----------CC-
Confidence 5899999997521 1 2356778899999999988876642 222478888886443111 00
Q ss_pred hHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHHhc------CCCCEEEEecCccccCCCCCCCcccccc
Q psy17528 243 AEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVG------HELPICVLRPSIVFPTLQEPMPLWIKGF 316 (366)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~------~gl~~~ilRp~~v~G~~~~~~~~~~~~~ 316 (366)
....|+.+|...+.+.+.+. +|+.++.|.||.+-.+.......
T Consensus 188 --------------------------~~~~Y~asKaAl~~lt~~la~el~~~~gIrVn~V~PG~v~T~~~~~~~~----- 236 (299)
T PRK06300 188 --------------------------YGGGMSSAKAALESDTKVLAWEAGRRWGIRVNTISAGPLASRAGKAIGF----- 236 (299)
T ss_pred --------------------------ccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCccChhhhcccc-----
Confidence 00269999999988886655 38999999999987653211000
Q ss_pred chHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhh
Q psy17528 317 NGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 317 ~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
. ........... ....+...+|++.++++++...
T Consensus 237 ~--~~~~~~~~~~~---------p~~r~~~peevA~~v~~L~s~~ 270 (299)
T PRK06300 237 I--ERMVDYYQDWA---------PLPEPMEAEQVGAAAAFLVSPL 270 (299)
T ss_pred c--HHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCcc
Confidence 0 01111111100 1123567899999999887643
|
|
| >KOG1210|consensus | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.1e-06 Score=84.59 Aligned_cols=202 Identities=16% Similarity=0.097 Sum_probs=126.6
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
.+|+|||++..+|.+++..+...| ..|.++.|+.......++-.+
T Consensus 34 ~hi~itggS~glgl~la~e~~~~g---a~Vti~ar~~~kl~~a~~~l~-------------------------------- 78 (331)
T KOG1210|consen 34 RHILITGGSSGLGLALALECKREG---ADVTITARSGKKLLEAKAELE-------------------------------- 78 (331)
T ss_pred ceEEEecCcchhhHHHHHHHHHcc---CceEEEeccHHHHHHHHhhhh--------------------------------
Confidence 689999999999999999999999 899999998654322221111
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIRTAY 194 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~~~~ 194 (366)
.......+.+..+|+.|-+ +....++ .+|.+|+|||..- ..+..+..+
T Consensus 79 ------------l~~~~~~v~~~S~d~~~Y~------~v~~~~~~l~~~~~~~d~l~~cAG~~v~g~f~~~s~~~v~~~m 140 (331)
T KOG1210|consen 79 ------------LLTQVEDVSYKSVDVIDYD------SVSKVIEELRDLEGPIDNLFCCAGVAVPGLFEDLSPEVVEKLM 140 (331)
T ss_pred ------------hhhccceeeEeccccccHH------HHHHHHhhhhhccCCcceEEEecCcccccccccCCHHHHHHHH
Confidence 0001123778899996654 4444443 4699999999631 124457789
Q ss_pred HHHHHHHHHHHHHHHhc-C---CCcEEEEeeCccee-cCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCC
Q psy17528 195 NINVKGTQTILALAKRM-K---GLKSFVHVSTAYCN-CDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGK 269 (366)
Q Consensus 195 ~~nv~~~~~ll~~a~~~-~---~~~~~v~iSS~~~~-~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (366)
++|..++.++++++.+. + ...+|+.+||..+. +-..
T Consensus 141 ~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a~~~i~G--------------------------------------- 181 (331)
T KOG1210|consen 141 DVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLAMLGIYG--------------------------------------- 181 (331)
T ss_pred HhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhhhcCccc---------------------------------------
Confidence 99999999988865442 2 23389999986322 1100
Q ss_pred CchHHHHHHH----HHHHHHHhc-CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCc
Q psy17528 270 PNSYTLTKAT----AEDLVRQVG-HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDV 344 (366)
Q Consensus 270 ~~~Y~~sK~~----~E~~l~~~~-~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~ 344 (366)
-+.|..+|.. ++.+-++.. +++.++..-|+.+-.|+..-- ...+.....+. +...+.
T Consensus 182 ysaYs~sK~alrgLa~~l~qE~i~~~v~Vt~~~P~~~~tpGfE~E---------------n~tkP~~t~ii---~g~ss~ 243 (331)
T KOG1210|consen 182 YSAYSPSKFALRGLAEALRQELIKYGVHVTLYYPPDTLTPGFERE---------------NKTKPEETKII---EGGSSV 243 (331)
T ss_pred ccccccHHHHHHHHHHHHHHHHhhcceEEEEEcCCCCCCCccccc---------------cccCchheeee---cCCCCC
Confidence 0556666654 444444444 788888888888777754210 00111111122 122345
Q ss_pred ccHHHHHHHHHHHHHh
Q psy17528 345 VPGDRVINAMAALAWY 360 (366)
Q Consensus 345 v~vdDva~ai~~~~~~ 360 (366)
+.-+++|++++.-+.+
T Consensus 244 ~~~e~~a~~~~~~~~r 259 (331)
T KOG1210|consen 244 IKCEEMAKAIVKGMKR 259 (331)
T ss_pred cCHHHHHHHHHhHHhh
Confidence 7788888888765443
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.8e-07 Score=88.76 Aligned_cols=122 Identities=13% Similarity=0.086 Sum_probs=87.1
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
.|+++|.|+|++|.||+.++..|...+ ....+.++++... ......+.+
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~-~~~elvL~Di~~~-~g~a~Dl~~----------------------------- 54 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNP-HVSELSLYDIVGA-PGVAADLSH----------------------------- 54 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCC-CCCEEEEEecCCC-cccccchhh-----------------------------
Confidence 467899999999999999999998664 4578999998321 110000000
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh-hhhHHHHHHHHHHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF-DEHIRTAYNINVKGTQTI 204 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~-~~~~~~~~~~nv~~~~~l 204 (366)
.... ....+.+++. +..+.+.++|+||+++|.... ..+..+.+..|+..++++
T Consensus 55 ------------------~~~~--~~v~~~td~~------~~~~~l~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i 108 (321)
T PTZ00325 55 ------------------IDTP--AKVTGYADGE------LWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDL 108 (321)
T ss_pred ------------------cCcC--ceEEEecCCC------chHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 0111 2233444433 335678899999999998653 346678899999999999
Q ss_pred HHHHHhcCCCcEEEEeeCcce
Q psy17528 205 LALAKRMKGLKSFVHVSTAYC 225 (366)
Q Consensus 205 l~~a~~~~~~~~~v~iSS~~~ 225 (366)
++.+++. +++++|+++|-.+
T Consensus 109 ~~~i~~~-~~~~iviv~SNPv 128 (321)
T PTZ00325 109 VAAVASS-APKAIVGIVSNPV 128 (321)
T ss_pred HHHHHHH-CCCeEEEEecCcH
Confidence 9999997 8899999999643
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.5e-07 Score=87.91 Aligned_cols=174 Identities=13% Similarity=0.074 Sum_probs=110.8
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
.+||.|+|++|.||+.++..|...+ ....+.++++.+ .......+.+
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~-~~~el~L~Di~~-~~g~a~Dl~~------------------------------- 64 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNP-LVSELHLYDIAN-TPGVAADVSH------------------------------- 64 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCC-CCCEEEEEecCC-CCeeEchhhh-------------------------------
Confidence 4699999999999999999998774 457899999875 2110000100
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh-hhhHHHHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF-DEHIRTAYNINVKGTQTILA 206 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~-~~~~~~~~~~nv~~~~~ll~ 206 (366)
..... ...++.+.+ ++.+.++++|+|||+||.... .....+....|...++++.+
T Consensus 65 ----------------~~~~~--~i~~~~~~~------d~~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~ 120 (323)
T PLN00106 65 ----------------INTPA--QVRGFLGDD------QLGDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCE 120 (323)
T ss_pred ----------------CCcCc--eEEEEeCCC------CHHHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 01111 222332232 456788999999999998654 35678899999999999999
Q ss_pred HHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHH
Q psy17528 207 LAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQ 286 (366)
Q Consensus 207 ~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~ 286 (366)
.+.+. ++..+++++|==+.+...-+.. ........+....||.+++..+++-..
T Consensus 121 ~i~~~-~p~aivivvSNPvD~~~~i~t~-------------------------~~~~~s~~p~~~viG~~~LDs~Rl~~~ 174 (323)
T PLN00106 121 AVAKH-CPNALVNIISNPVNSTVPIAAE-------------------------VLKKAGVYDPKKLFGVTTLDVVRANTF 174 (323)
T ss_pred HHHHH-CCCeEEEEeCCCccccHHHHHH-------------------------HHHHcCCCCcceEEEEecchHHHHHHH
Confidence 99987 6888888888322110000000 000001112226788889888888776
Q ss_pred hc--CCCCEEEEecCccccCC
Q psy17528 287 VG--HELPICVLRPSIVFPTL 305 (366)
Q Consensus 287 ~~--~gl~~~ilRp~~v~G~~ 305 (366)
.+ .+++..-++ +.|+|..
T Consensus 175 lA~~lgv~~~~V~-~~ViGeH 194 (323)
T PLN00106 175 VAEKKGLDPADVD-VPVVGGH 194 (323)
T ss_pred HHHHhCCChhheE-EEEEEeC
Confidence 66 677776664 3445543
|
|
| >KOG1014|consensus | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.1e-06 Score=81.56 Aligned_cols=191 Identities=15% Similarity=0.156 Sum_probs=123.1
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
++=..|||||..||.+.+++|.++| -+|++++|+.++. +++.+...+
T Consensus 49 g~WAVVTGaTDGIGKayA~eLAkrG---~nvvLIsRt~~KL---~~v~kEI~~--------------------------- 95 (312)
T KOG1014|consen 49 GSWAVVTGATDGIGKAYARELAKRG---FNVVLISRTQEKL---EAVAKEIEE--------------------------- 95 (312)
T ss_pred CCEEEEECCCCcchHHHHHHHHHcC---CEEEEEeCCHHHH---HHHHHHHHH---------------------------
Confidence 3679999999999999999999999 7899999986542 222221111
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccC-hhh--------hHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVR-FDE--------HIRTAYNI 196 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~-~~~--------~~~~~~~~ 196 (366)
...-++.++..|+++++. .-+.+.+.+. ++.++|||+|... .++ .....+.+
T Consensus 96 ---------------~~~vev~~i~~Dft~~~~--~ye~i~~~l~~~~VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~v 158 (312)
T KOG1014|consen 96 ---------------KYKVEVRIIAIDFTKGDE--VYEKLLEKLAGLDVGILVNNVGMSYDYPESFLKYPEGELQNIINV 158 (312)
T ss_pred ---------------HhCcEEEEEEEecCCCch--hHHHHHHHhcCCceEEEEecccccCCCcHHHHhCchhhhhheeEE
Confidence 112578899999999872 1123444444 5679999999864 221 12345556
Q ss_pred HHHHHHHHHHHHHh-c--CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchH
Q psy17528 197 NVKGTQTILALAKR-M--KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSY 273 (366)
Q Consensus 197 nv~~~~~ll~~a~~-~--~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 273 (366)
|+.++..+.+.... + .+-.-+|.+||..+.-+. +..+.|
T Consensus 159 N~~~~~~~t~~ilp~M~~r~~G~IvnigS~ag~~p~--------------------------------------p~~s~y 200 (312)
T KOG1014|consen 159 NILSVTLLTQLILPGMVERKKGIIVNIGSFAGLIPT--------------------------------------PLLSVY 200 (312)
T ss_pred ecchHHHHHHHhhhhhhcCCCceEEEeccccccccC--------------------------------------hhHHHH
Confidence 87777766665432 2 244568999997654211 112789
Q ss_pred HHHHHHHHHHHHHh----c-CCCCEEEEecCccccCCCCC-CCccccccchHHHHHHHHhc
Q psy17528 274 TLTKATAEDLVRQV----G-HELPICVLRPSIVFPTLQEP-MPLWIKGFNGVMALALGAGT 328 (366)
Q Consensus 274 ~~sK~~~E~~l~~~----~-~gl~~~ilRp~~v~G~~~~~-~~~~~~~~~~~~~~~~~~~~ 328 (366)
+.+|...+.+-... . +|+.+..+-|..|-++-... .+.++ .+....+...++.
T Consensus 201 sasK~~v~~~S~~L~~Ey~~~gI~Vq~v~p~~VaTkm~~~~~~sl~--~ps~~tfaksal~ 259 (312)
T KOG1014|consen 201 SASKAFVDFFSRCLQKEYESKGIFVQSVIPYLVATKMAKYRKPSLF--VPSPETFAKSALN 259 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCeEEEEeehhheeccccccCCCCCc--CcCHHHHHHHHHh
Confidence 99999666655433 3 79999999999998864422 22222 2344556666654
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=3e-06 Score=75.64 Aligned_cols=37 Identities=16% Similarity=0.092 Sum_probs=33.8
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+++++++||||+|.||..+++.|.+.| .+|++.+|+.
T Consensus 14 l~gk~~lVTGa~~GIG~aia~~l~~~G---~~V~l~~r~~ 50 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQG---AKVIVTDIDQ 50 (169)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHCC---CEEEEEECCH
Confidence 568999999999999999999999998 7899998874
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.31 E-value=7.3e-06 Score=80.64 Aligned_cols=122 Identities=16% Similarity=0.113 Sum_probs=77.1
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCC----CccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCP----QIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~----~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
..+|+||||+|+||++++..|+..+. .-..|.++++++..... + |...
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~-~---------------------------g~~~ 53 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKAL-E---------------------------GVVM 53 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccc-c---------------------------ceee
Confidence 45799999999999999999988641 11489999996532100 0 0000
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh-hhhHHHHHHHHHHHHH
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF-DEHIRTAYNINVKGTQ 202 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~-~~~~~~~~~~nv~~~~ 202 (366)
. . .+-.....+|+.... ++.+.++++|+|||+||.... .++..+.++.|+...+
T Consensus 54 D----------------l---~d~~~~~~~~~~~~~------~~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~ 108 (325)
T cd01336 54 E----------------L---QDCAFPLLKSVVATT------DPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFK 108 (325)
T ss_pred e----------------h---hhccccccCCceecC------CHHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHH
Confidence 0 0 000001122333222 456777899999999998654 3456789999999999
Q ss_pred HHHHHHHhcCCCc-EEEEeeC
Q psy17528 203 TILALAKRMKGLK-SFVHVST 222 (366)
Q Consensus 203 ~ll~~a~~~~~~~-~~v~iSS 222 (366)
.+...+.+..... .++.+|.
T Consensus 109 ~i~~~i~~~~~~~~iiivvsN 129 (325)
T cd01336 109 EQGEALDKYAKKNVKVLVVGN 129 (325)
T ss_pred HHHHHHHHhCCCCeEEEEecC
Confidence 9988887762223 3444554
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >KOG3019|consensus | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.1e-06 Score=78.24 Aligned_cols=130 Identities=12% Similarity=0.068 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC-cEEEEeeCcceecC--ccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKRMKGL-KSFVHVSTAYCNCD--RKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~~~~-~~~v~iSS~~~~~~--~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
++....+..+..+.++....... +.+|.+|....|.. .+.++|+..-.
T Consensus 99 ev~gSRi~~t~~la~aI~~aPq~~~~~Vlv~gva~y~pS~s~eY~e~~~~q----------------------------- 149 (315)
T KOG3019|consen 99 EVKGSRIRVTSKLADAINNAPQEARPTVLVSGVAVYVPSESQEYSEKIVHQ----------------------------- 149 (315)
T ss_pred HhhcceeeHHHHHHHHHhcCCCCCCCeEEEEeeEEeccccccccccccccC-----------------------------
Confidence 34444556677888887766333 57999999887743 22344433221
Q ss_pred CCchHHHHHH--HHHHHHHHhcCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCccc
Q psy17528 269 KPNSYTLTKA--TAEDLVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVP 346 (366)
Q Consensus 269 ~~~~Y~~sK~--~~E~~l~~~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~ 346 (366)
..-..+++ .-|..........+.+++|.|.|.|.+...+. .+.+.-++..|.+ .+.|++.++|||
T Consensus 150 --gfd~~srL~l~WE~aA~~~~~~~r~~~iR~GvVlG~gGGa~~--------~M~lpF~~g~GGP---lGsG~Q~fpWIH 216 (315)
T KOG3019|consen 150 --GFDILSRLCLEWEGAALKANKDVRVALIRIGVVLGKGGGALA--------MMILPFQMGAGGP---LGSGQQWFPWIH 216 (315)
T ss_pred --ChHHHHHHHHHHHHHhhccCcceeEEEEEEeEEEecCCcchh--------hhhhhhhhccCCc---CCCCCeeeeeee
Confidence 11122332 23333333335689999999999998764322 1223334444442 467899999999
Q ss_pred HHHHHHHHHHHHHhhhh
Q psy17528 347 GDRVINAMAALAWYFLF 363 (366)
Q Consensus 347 vdDva~ai~~~~~~~~~ 363 (366)
++|++..|..+++++..
T Consensus 217 v~DL~~li~~ale~~~v 233 (315)
T KOG3019|consen 217 VDDLVNLIYEALENPSV 233 (315)
T ss_pred hHHHHHHHHHHHhcCCC
Confidence 99999999999998654
|
|
| >KOG1478|consensus | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.3e-05 Score=71.89 Aligned_cols=182 Identities=16% Similarity=0.137 Sum_probs=112.3
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCC--ccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQ--IRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~--~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
-|.++|||+++.+|..++.+|++...+ +-++.+..|+-++ .++...+++..
T Consensus 3 RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~k--ae~vc~~lk~f------------------------- 55 (341)
T KOG1478|consen 3 RKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSK--AEAVCAALKAF------------------------- 55 (341)
T ss_pred ceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhH--HHHHHHHHHHh-------------------------
Confidence 468999999999999999999998533 2356667776543 33334443322
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHH---HHHHHHhCcCEEEEcCcccChh---------------
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSAR---DEELLISQTTIIFHIAATVRFD--------------- 187 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~---~~~~~~~~~d~Vih~a~~~~~~--------------- 187 (366)
.+...-.++++..|+++... +.. ++.+-+...|.|+-|||....+
T Consensus 56 ---------------~p~~~i~~~yvlvD~sNm~S--v~~A~~di~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnp 118 (341)
T KOG1478|consen 56 ---------------HPKSTIEVTYVLVDVSNMQS--VFRASKDIKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNP 118 (341)
T ss_pred ---------------CCCceeEEEEEEEehhhHHH--HHHHHHHHHHHhhhccEEEEccccCCCCcccHHHHHHHHhhch
Confidence 22223578899999998641 001 1222233679999999985311
Q ss_pred -------------------hhHHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHH
Q psy17528 188 -------------------EHIRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEE 245 (366)
Q Consensus 188 -------------------~~~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~ 245 (366)
....+.++.||-|..-+++.+... .....+|.+||...-..
T Consensus 119 v~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l~pll~~~~~~~lvwtSS~~a~kk----------------- 181 (341)
T KOG1478|consen 119 VIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELEPLLCHSDNPQLVWTSSRMARKK----------------- 181 (341)
T ss_pred hHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhhhhHhhcCCCCeEEEEeecccccc-----------------
Confidence 012347778998887777655432 23348999999643211
Q ss_pred HHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccc
Q psy17528 246 LSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVF 302 (366)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~ 302 (366)
..|.|+++..... .+|..||++.+-+-.+.. .|+...++.||...
T Consensus 182 ------~lsleD~q~~kg~------~pY~sSKrl~DlLh~A~~~~~~~~g~~qyvv~pg~~t 231 (341)
T KOG1478|consen 182 ------NLSLEDFQHSKGK------EPYSSSKRLTDLLHVALNRNFKPLGINQYVVQPGIFT 231 (341)
T ss_pred ------cCCHHHHhhhcCC------CCcchhHHHHHHHHHHHhccccccchhhhcccCceee
Confidence 1233444443321 679999998876554333 35666777777654
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.7e-05 Score=77.96 Aligned_cols=174 Identities=13% Similarity=0.079 Sum_probs=108.8
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCcc-----EEEEEEcCCCC--cC-HHHHHHHHhhhhhhhhhhhcCCCCCCccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIR-----KIILLIRTRGS--TS-ITQRVYNYFNDAVFDRMRLECPNYADKVD 118 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~-----~V~~~~R~~~~--~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 118 (366)
|.++|.|+||+|.||+.++..|+..| -+. .+++++..+.. .. ....+.+
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~~~-~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~---------------------- 57 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGE-MFGPDQPVILQLLELPQALKALEGVAMELED---------------------- 57 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhcc-ccCCCCceEEEEEecCCcccccceeehhhhh----------------------
Confidence 35799999999999999999998875 234 78899886432 11 0000000
Q ss_pred cccccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh-hhHHHHHHHH
Q psy17528 119 IGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD-EHIRTAYNIN 197 (366)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~-~~~~~~~~~n 197 (366)
- .......+.+. . ...+.+.++|+||.+||..... ++..+.+..|
T Consensus 58 -----~----------------~~~~~~~~~i~-~------------~~~~~~~daDivvitaG~~~k~g~tR~dll~~N 103 (322)
T cd01338 58 -----C----------------AFPLLAEIVIT-D------------DPNVAFKDADWALLVGAKPRGPGMERADLLKAN 103 (322)
T ss_pred -----c----------------cccccCceEEe-c------------CcHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHH
Confidence 0 00001122221 1 1235568999999999986433 4667789999
Q ss_pred HHHHHHHHHHHHhcCC-CcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHH
Q psy17528 198 VKGTQTILALAKRMKG-LKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLT 276 (366)
Q Consensus 198 v~~~~~ll~~a~~~~~-~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~s 276 (366)
+...+.+...+.+... -..++.+|.- . +..+-+. ...++ .-+....|+.+
T Consensus 104 ~~i~~~i~~~i~~~~~~~~iiivvsNP--------v------------D~~t~~~-------~k~sg--~~p~~~ViG~t 154 (322)
T cd01338 104 GKIFTAQGKALNDVASRDVKVLVVGNP--------C------------NTNALIA-------MKNAP--DIPPDNFTAMT 154 (322)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEEecCc--------H------------HHHHHHH-------HHHcC--CCChHheEEeh
Confidence 9999999999888632 3334445431 0 0000000 00000 01112689999
Q ss_pred HHHHHHHHHHhc--CCCCEEEEecCccccCCC
Q psy17528 277 KATAEDLVRQVG--HELPICVLRPSIVFPTLQ 306 (366)
Q Consensus 277 K~~~E~~l~~~~--~gl~~~ilRp~~v~G~~~ 306 (366)
++..+++....+ .+++...+|..+|||+..
T Consensus 155 ~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG 186 (322)
T cd01338 155 RLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHS 186 (322)
T ss_pred HHHHHHHHHHHHHHhCcChhHeEEEEEEeCCc
Confidence 999999998877 789999999999999864
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.2e-05 Score=72.40 Aligned_cols=103 Identities=12% Similarity=0.121 Sum_probs=71.3
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
|+++|||||||+|. +++.|.+.| ++|.+.+|+... .+.+...
T Consensus 1 m~vlVtGGtG~gg~-la~~L~~~G---~~V~v~~R~~~~---~~~l~~~------------------------------- 42 (177)
T PRK08309 1 MHALVIGGTGMLKR-VSLWLCEKG---FHVSVIARREVK---LENVKRE------------------------------- 42 (177)
T ss_pred CEEEEECcCHHHHH-HHHHHHHCc---CEEEEEECCHHH---HHHHHHH-------------------------------
Confidence 57999999998876 999999998 788888886421 1111110
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccChhhhHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRFDEHIRTAYNINVKGT 201 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~~~~~~~~~~~nv~~~ 201 (366)
.+ ...++.++.+|+.|.+ ++..+++ .+|.+|+.+ .+.++
T Consensus 43 ------------l~-~~~~i~~~~~Dv~d~~------sv~~~i~~~l~~~g~id~lv~~v---------------h~~~~ 88 (177)
T PRK08309 43 ------------ST-TPESITPLPLDYHDDD------ALKLAIKSTIEKNGPFDLAVAWI---------------HSSAK 88 (177)
T ss_pred ------------hh-cCCcEEEEEccCCCHH------HHHHHHHHHHHHcCCCeEEEEec---------------cccch
Confidence 11 1246788899999987 6666554 356666542 34467
Q ss_pred HHHHHHHHhcCCCc----EEEEeeCcc
Q psy17528 202 QTILALAKRMKGLK----SFVHVSTAY 224 (366)
Q Consensus 202 ~~ll~~a~~~~~~~----~~v~iSS~~ 224 (366)
.++.+++++. +++ +|+|+=++.
T Consensus 89 ~~~~~~~~~~-gv~~~~~~~~h~~gs~ 114 (177)
T PRK08309 89 DALSVVCREL-DGSSETYRLFHVLGSA 114 (177)
T ss_pred hhHHHHHHHH-ccCCCCceEEEEeCCc
Confidence 7888888887 777 888876544
|
|
| >PRK09620 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=9.5e-06 Score=76.01 Aligned_cols=36 Identities=25% Similarity=0.445 Sum_probs=31.8
Q ss_pred CCCCeEEEeCCc----------------chHHHHHHHHHHHhCCCccEEEEEEcC
Q psy17528 46 YKDQTIFITGAT----------------GFLGSLLVEKLLRCCPQIRKIILLIRT 84 (366)
Q Consensus 46 ~~~~~ilItGat----------------G~IG~~lv~~Ll~~g~~~~~V~~~~R~ 84 (366)
+++++||||+|. ||+|++|++.|++.| +.|+++++.
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~G---a~V~li~g~ 52 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKG---AHVIYLHGY 52 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCC---CeEEEEeCC
Confidence 468999999876 999999999999999 788888764
|
|
| >KOG1204|consensus | Back alignment and domain information |
|---|
Probab=98.00 E-value=5.1e-05 Score=70.37 Aligned_cols=96 Identities=17% Similarity=0.198 Sum_probs=68.8
Q ss_pred CcCEEEEcCcccC----------hhhhHHHHHHHHHHHHHHHHHHHHhc----CCCcEEEEeeCcceecCccccccccCC
Q psy17528 173 QTTIIFHIAATVR----------FDEHIRTAYNINVKGTQTILALAKRM----KGLKSFVHVSTAYCNCDRKFIAEKFYP 238 (366)
Q Consensus 173 ~~d~Vih~a~~~~----------~~~~~~~~~~~nv~~~~~ll~~a~~~----~~~~~~v~iSS~~~~~~~~~~~e~~~~ 238 (366)
+.|+||||||... ....+...++.|+.+...+...+.+. .-.+-+|++||..+..+
T Consensus 82 kr~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~aav~p---------- 151 (253)
T KOG1204|consen 82 KRDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSLAAVRP---------- 151 (253)
T ss_pred ceeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecchhhhcc----------
Confidence 4699999999752 12356778999998887776655432 11367899999865421
Q ss_pred CCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHHhc---C-CCCEEEEecCccccCCC
Q psy17528 239 PVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVG---H-ELPICVLRPSIVFPTLQ 306 (366)
Q Consensus 239 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~---~-gl~~~ilRp~~v~G~~~ 306 (366)
+ .....|+.+|+.-++++.... + ++.+..++||.|-.+-+
T Consensus 152 --~--------------------------~~wa~yc~~KaAr~m~f~~lA~EEp~~v~vl~~aPGvvDT~mq 195 (253)
T KOG1204|consen 152 --F--------------------------SSWAAYCSSKAARNMYFMVLASEEPFDVRVLNYAPGVVDTQMQ 195 (253)
T ss_pred --c--------------------------cHHHHhhhhHHHHHHHHHHHhhcCccceeEEEccCCcccchhH
Confidence 1 112689999999999998877 3 67788889998876533
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0002 Score=70.04 Aligned_cols=117 Identities=14% Similarity=0.136 Sum_probs=78.1
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
|+|+|+||+|.+|++++..|.........+.+++|++......-.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alD----------------------------------- 45 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVD----------------------------------- 45 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehh-----------------------------------
Confidence 589999999999999999886532234678888886421000000
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh-hhhHHHHHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF-DEHIRTAYNINVKGTQTILAL 207 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~-~~~~~~~~~~nv~~~~~ll~~ 207 (366)
.... .....+.+ .+.+ ++.+.++++|+||.++|..+. ..+..+.+..|....+.+++.
T Consensus 46 ------------l~~~-~~~~~i~~--~~~~------d~~~~l~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~ 104 (312)
T PRK05086 46 ------------LSHI-PTAVKIKG--FSGE------DPTPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEK 104 (312)
T ss_pred ------------hhcC-CCCceEEE--eCCC------CHHHHcCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 0000 11112223 1112 344666889999999998543 345677899999999999999
Q ss_pred HHhcCCCcEEEEeeC
Q psy17528 208 AKRMKGLKSFVHVST 222 (366)
Q Consensus 208 a~~~~~~~~~v~iSS 222 (366)
+.+. +.++++.+.|
T Consensus 105 i~~~-~~~~ivivvs 118 (312)
T PRK05086 105 VAKT-CPKACIGIIT 118 (312)
T ss_pred HHHh-CCCeEEEEcc
Confidence 9987 7788888877
|
|
| >PRK06732 phosphopantothenate--cysteine ligase; Validated | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00012 Score=68.60 Aligned_cols=33 Identities=27% Similarity=0.388 Sum_probs=27.4
Q ss_pred eEEEe-CCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 50 TIFIT-GATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 50 ~ilIt-GatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.-.|| .++||+|.+|++.|++.| ++|+++.|..
T Consensus 17 VR~itN~SSG~iG~aLA~~L~~~G---~~V~li~r~~ 50 (229)
T PRK06732 17 VRGITNHSTGQLGKIIAETFLAAG---HEVTLVTTKT 50 (229)
T ss_pred ceeecCccchHHHHHHHHHHHhCC---CEEEEEECcc
Confidence 44455 679999999999999999 8999988753
|
|
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00072 Score=67.85 Aligned_cols=33 Identities=9% Similarity=0.171 Sum_probs=29.1
Q ss_pred CCeEEEeCCcchHHHH--HHHHHHHhCCCccEEEEEEcC
Q psy17528 48 DQTIFITGATGFLGSL--LVEKLLRCCPQIRKIILLIRT 84 (366)
Q Consensus 48 ~~~ilItGatG~IG~~--lv~~Ll~~g~~~~~V~~~~R~ 84 (366)
+|++||||+++.+|.+ +++.| +.| ..|+++.+.
T Consensus 41 gK~aLVTGaSsGIGlA~~IA~al-~~G---A~Vi~v~~~ 75 (398)
T PRK13656 41 PKKVLVIGASSGYGLASRIAAAF-GAG---ADTLGVFFE 75 (398)
T ss_pred CCEEEEECCCchHhHHHHHHHHH-HcC---CeEEEEecC
Confidence 6899999999999999 89999 888 777788754
|
|
| >KOG1199|consensus | Back alignment and domain information |
|---|
Probab=97.79 E-value=4.6e-05 Score=67.98 Aligned_cols=166 Identities=17% Similarity=0.206 Sum_probs=110.5
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
..|+...+|||++..+|...++.|.+.| ..|.+++-..+.-.. +.+
T Consensus 6 s~kglvalvtggasglg~ataerlakqg---asv~lldlp~skg~~---vak---------------------------- 51 (260)
T KOG1199|consen 6 STKGLVALVTGGASGLGKATAERLAKQG---ASVALLDLPQSKGAD---VAK---------------------------- 51 (260)
T ss_pred hhcCeeEEeecCcccccHHHHHHHHhcC---ceEEEEeCCcccchH---HHH----------------------------
Confidence 4568899999999999999999999999 888888887654221 111
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC------------
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR------------ 185 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~------------ 185 (366)
....++.|...|+++.. ++..++. ..|+.++|||+.-
T Consensus 52 ------------------elg~~~vf~padvtsek------dv~aala~ak~kfgrld~~vncagia~a~ktyn~~k~~~ 107 (260)
T KOG1199|consen 52 ------------------ELGGKVVFTPADVTSEK------DVRAALAKAKAKFGRLDALVNCAGIAYAFKTYNVQKKKH 107 (260)
T ss_pred ------------------HhCCceEEeccccCcHH------HHHHHHHHHHhhccceeeeeeccceeeeeeeeeeccccc
Confidence 13468899999999876 5655442 5799999999741
Q ss_pred -hhhhHHHHHHHHHHHHHHHHHHHHh-c------CCCcEEEEeeCc--ceecCccccccccCCCCCChHHHHHHhhhcch
Q psy17528 186 -FDEHIRTAYNINVKGTQTILALAKR-M------KGLKSFVHVSTA--YCNCDRKFIAEKFYPPVFTAEELSALVAHASD 255 (366)
Q Consensus 186 -~~~~~~~~~~~nv~~~~~ll~~a~~-~------~~~~~~v~iSS~--~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~ 255 (366)
.-++....+++|+.|+.+++++... + .+-.|=|.+-++ ..+...-
T Consensus 108 h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasvaafdgq~------------------------- 162 (260)
T KOG1199|consen 108 HDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASVAAFDGQT------------------------- 162 (260)
T ss_pred ccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeeceeeeecCcc-------------------------
Confidence 1245566788899999999986532 2 122343444443 4332110
Q ss_pred HHHHhhhhcccCCCCchHHHHHHHHH----HHHHHhc-CCCCEEEEecCccccCCC
Q psy17528 256 EEIALLNEHIIGGKPNSYTLTKATAE----DLVRQVG-HELPICVLRPSIVFPTLQ 306 (366)
Q Consensus 256 ~~~~~~~~~~~~~~~~~Y~~sK~~~E----~~l~~~~-~gl~~~ilRp~~v~G~~~ 306 (366)
....|..||...- -+.+... .|++++.+-||..-.|.-
T Consensus 163 -------------gqaaysaskgaivgmtlpiardla~~gir~~tiapglf~tpll 205 (260)
T KOG1199|consen 163 -------------GQAAYSASKGAIVGMTLPIARDLAGDGIRFNTIAPGLFDTPLL 205 (260)
T ss_pred -------------chhhhhcccCceEeeechhhhhcccCceEEEeecccccCChhh
Confidence 0156777776332 2334445 789999999887655543
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00032 Score=69.00 Aligned_cols=55 Identities=11% Similarity=-0.030 Sum_probs=41.3
Q ss_pred HHHHHhCcCEEEEcCcccChh-hhHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEee
Q psy17528 167 EELLISQTTIIFHIAATVRFD-EHIRTAYNINVKGTQTILALAKRMK-GLKSFVHVS 221 (366)
Q Consensus 167 ~~~~~~~~d~Vih~a~~~~~~-~~~~~~~~~nv~~~~~ll~~a~~~~-~~~~~v~iS 221 (366)
..+.++++|+|||+||....+ ++..+....|+...+.+...+.+.. .-..++.+|
T Consensus 70 ~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 126 (323)
T cd00704 70 PEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG 126 (323)
T ss_pred hHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 346678999999999986533 4667889999999999999888862 333445554
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00031 Score=70.53 Aligned_cols=78 Identities=19% Similarity=0.235 Sum_probs=63.2
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+++|+|.|| |+||+.++..|.++|. ..|++.+|+..+. +++.
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d--~~V~iAdRs~~~~---~~i~-------------------------------- 42 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGD--GEVTIADRSKEKC---ARIA-------------------------------- 42 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCC--ceEEEEeCCHHHH---HHHH--------------------------------
Confidence 578999998 9999999999999963 8999999985431 1111
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcc
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAAT 183 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~ 183 (366)
.....+++....|+.+.+ .+..++++.|+||+++..
T Consensus 43 --------------~~~~~~v~~~~vD~~d~~------al~~li~~~d~VIn~~p~ 78 (389)
T COG1748 43 --------------ELIGGKVEALQVDAADVD------ALVALIKDFDLVINAAPP 78 (389)
T ss_pred --------------hhccccceeEEecccChH------HHHHHHhcCCEEEEeCCc
Confidence 112348899999999987 899999999999999875
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00029 Score=69.69 Aligned_cols=40 Identities=25% Similarity=0.340 Sum_probs=34.2
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.+++++|+||||+|+||+.++++|++.+ .+.+|+++.|+.
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~-gv~~lilv~R~~ 191 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKT-GVAELLLVARQQ 191 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhC-CCCEEEEEcCCH
Confidence 5678999999999999999999998652 457899998864
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00095 Score=57.76 Aligned_cols=117 Identities=17% Similarity=0.119 Sum_probs=76.6
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCH-HHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSI-TQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+||.|+||+|.+|++++..|...+ -...+.+++++++.... ...+.+..
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~-l~~ei~L~D~~~~~~~g~a~Dl~~~~----------------------------- 50 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQG-LADEIVLIDINEDKAEGEALDLSHAS----------------------------- 50 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTT-TSSEEEEEESSHHHHHHHHHHHHHHH-----------------------------
T ss_pred CEEEEECCCChHHHHHHHHHHhCC-CCCceEEeccCcccceeeehhhhhhh-----------------------------
Confidence 589999999999999999999985 56789999998542111 01111100
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh-hhhHHHHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF-DEHIRTAYNINVKGTQTILA 206 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~-~~~~~~~~~~nv~~~~~ll~ 206 (366)
......+.+..++. +.++++|+||-++|.... .+...++++.|....+.+.+
T Consensus 51 --------------~~~~~~~~i~~~~~-------------~~~~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~ 103 (141)
T PF00056_consen 51 --------------APLPSPVRITSGDY-------------EALKDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAK 103 (141)
T ss_dssp --------------HGSTEEEEEEESSG-------------GGGTTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHH
T ss_pred --------------hhcccccccccccc-------------cccccccEEEEeccccccccccHHHHHHHhHhHHHHHHH
Confidence 00112233333222 335789999999997543 35667888999999999999
Q ss_pred HHHhcCCCcEEEEeeC
Q psy17528 207 LAKRMKGLKSFVHVST 222 (366)
Q Consensus 207 ~a~~~~~~~~~v~iSS 222 (366)
.+.+...-..++.+|.
T Consensus 104 ~i~~~~p~~~vivvtN 119 (141)
T PF00056_consen 104 KIAKYAPDAIVIVVTN 119 (141)
T ss_dssp HHHHHSTTSEEEE-SS
T ss_pred HHHHhCCccEEEEeCC
Confidence 9888733234444443
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00053 Score=68.64 Aligned_cols=78 Identities=18% Similarity=0.241 Sum_probs=55.9
Q ss_pred EEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccccc
Q psy17528 51 IFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNYFN 130 (366)
Q Consensus 51 ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (366)
|+|.|+ |++|+.+++.|.+.+ ...+|++.+|+... +.+...
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~-~~~~v~va~r~~~~------~~~~~~------------------------------- 41 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRG-PFEEVTVADRNPEK------AERLAE------------------------------- 41 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTT-CE-EEEEEESSHHH------HHHHHT-------------------------------
T ss_pred CEEEcC-cHHHHHHHHHHhcCC-CCCcEEEEECCHHH------HHHHHh-------------------------------
Confidence 799999 999999999999994 44489999998532 111110
Q ss_pred hhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCccc
Q psy17528 131 DAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATV 184 (366)
Q Consensus 131 ~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~ 184 (366)
.....++.++..|+.|.+ ++.++++++|+|||+++..
T Consensus 42 -----------~~~~~~~~~~~~d~~~~~------~l~~~~~~~dvVin~~gp~ 78 (386)
T PF03435_consen 42 -----------KLLGDRVEAVQVDVNDPE------SLAELLRGCDVVINCAGPF 78 (386)
T ss_dssp -------------TTTTEEEEE--TTTHH------HHHHHHTTSSEEEE-SSGG
T ss_pred -----------hccccceeEEEEecCCHH------HHHHHHhcCCEEEECCccc
Confidence 002368999999999987 7999999999999999864
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0003 Score=63.66 Aligned_cols=37 Identities=27% Similarity=0.332 Sum_probs=33.1
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+++++++|+||+|.+|+.+++.|.+.| .+|+++.|+.
T Consensus 26 l~~~~vlVlGgtG~iG~~~a~~l~~~g---~~V~l~~R~~ 62 (194)
T cd01078 26 LKGKTAVVLGGTGPVGQRAAVLLAREG---ARVVLVGRDL 62 (194)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEcCCH
Confidence 467899999999999999999999987 7899998873
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0012 Score=65.07 Aligned_cols=55 Identities=13% Similarity=0.048 Sum_probs=40.7
Q ss_pred HHHHhCcCEEEEcCcccChh-hhHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEeeC
Q psy17528 168 ELLISQTTIIFHIAATVRFD-EHIRTAYNINVKGTQTILALAKRMK-GLKSFVHVST 222 (366)
Q Consensus 168 ~~~~~~~d~Vih~a~~~~~~-~~~~~~~~~nv~~~~~ll~~a~~~~-~~~~~v~iSS 222 (366)
.+.+.++|+||++||..... ++..+....|+...+.+.+.+.+.. .-..++.+|.
T Consensus 70 ~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsN 126 (324)
T TIGR01758 70 AVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGN 126 (324)
T ss_pred HHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence 35678999999999986543 4567889999999999999888762 2234444443
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00077 Score=68.18 Aligned_cols=38 Identities=18% Similarity=0.229 Sum_probs=34.4
Q ss_pred cCCCCeEEEeCC----------------cchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 45 FYKDQTIFITGA----------------TGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 45 ~~~~~~ilItGa----------------tG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.+++++|+|||| +|.+|.++++.|.+.| .+|+++.++.
T Consensus 185 ~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~G---a~V~~v~~~~ 238 (399)
T PRK05579 185 DLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRG---ADVTLVSGPV 238 (399)
T ss_pred ccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCC---CEEEEeCCCc
Confidence 468999999999 9999999999999999 8899988764
|
|
| >COG0623 FabI Enoyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.018 Score=53.89 Aligned_cols=203 Identities=13% Similarity=0.103 Sum_probs=117.1
Q ss_pred cCCCCeEEEeCCc--chHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccc
Q psy17528 45 FYKDQTIFITGAT--GFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGIT 122 (366)
Q Consensus 45 ~~~~~~ilItGat--G~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (366)
++++|++||+|-. -.|+..+++.|.+.| .++......+ ...+|+.++.++
T Consensus 3 ~L~GK~~lI~Gvan~rSIAwGIAk~l~~~G---AeL~fTy~~e---~l~krv~~la~~---------------------- 54 (259)
T COG0623 3 LLEGKRILIMGVANNRSIAWGIAKALAEQG---AELAFTYQGE---RLEKRVEELAEE---------------------- 54 (259)
T ss_pred ccCCceEEEEEecccccHHHHHHHHHHHcC---CEEEEEeccH---HHHHHHHHHHhh----------------------
Confidence 5789999999864 469999999999999 6666655543 233444433221
Q ss_pred cccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccChh--------
Q psy17528 123 HRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRFD-------- 187 (366)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~~-------- 187 (366)
. ..-.++++|+++.+ .+..++. ..|.++|+.|...-+
T Consensus 55 ---------------------~-~s~~v~~cDV~~d~------~i~~~f~~i~~~~g~lD~lVHsIaFa~k~el~G~~~d 106 (259)
T COG0623 55 ---------------------L-GSDLVLPCDVTNDE------SIDALFATIKKKWGKLDGLVHSIAFAPKEELKGDYLD 106 (259)
T ss_pred ---------------------c-cCCeEEecCCCCHH------HHHHHHHHHHHhhCcccEEEEEeccCChHHhCCcccc
Confidence 1 22346889999876 5655553 679999999986522
Q ss_pred ---hhHHHHHHHHHHHHHHHHHHHHhc-CCCcEEE---EeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHh
Q psy17528 188 ---EHIRTAYNINVKGTQTILALAKRM-KGLKSFV---HVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIAL 260 (366)
Q Consensus 188 ---~~~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v---~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~ 260 (366)
+.+....++.+.....+.+.++.. ..-..++ |..+..+. |.
T Consensus 107 tsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLtYlgs~r~v-----------Pn--------------------- 154 (259)
T COG0623 107 TSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLTYLGSERVV-----------PN--------------------- 154 (259)
T ss_pred cCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEEeccceeec-----------CC---------------------
Confidence 122333444444455555555543 1222333 33332222 11
Q ss_pred hhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeec
Q psy17528 261 LNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQ 335 (366)
Q Consensus 261 ~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~ 335 (366)
+ |.-+..|+..|.-++-.. .|+++..|-.|.|-.-...... .+..++...-.
T Consensus 155 ----Y-----NvMGvAKAaLEasvRyLA~dlG~~gIRVNaISAGPIrTLAasgI~-------~f~~~l~~~e~------- 211 (259)
T COG0623 155 ----Y-----NVMGVAKAALEASVRYLAADLGKEGIRVNAISAGPIRTLAASGIG-------DFRKMLKENEA------- 211 (259)
T ss_pred ----C-----chhHHHHHHHHHHHHHHHHHhCccCeEEeeecccchHHHHhhccc-------cHHHHHHHHHh-------
Confidence 1 778999999998887655 7788887766554332111111 11222221111
Q ss_pred CCCCcccCcccHHHHHHHHHHHHHh
Q psy17528 336 TDPNISMDVVPGDRVINAMAALAWY 360 (366)
Q Consensus 336 ~~~~~~~~~v~vdDva~ai~~~~~~ 360 (366)
....+--+.++||.+..+.++..
T Consensus 212 --~aPl~r~vt~eeVG~tA~fLlSd 234 (259)
T COG0623 212 --NAPLRRNVTIEEVGNTAAFLLSD 234 (259)
T ss_pred --hCCccCCCCHHHhhhhHHHHhcc
Confidence 11233455688888888776643
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.003 Score=61.69 Aligned_cols=121 Identities=16% Similarity=0.156 Sum_probs=73.9
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
++|.|+|+||++|+.++..|+..| ....|++++|............+ +.+.+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g-~~~~v~lvd~~~~~~~l~~~~~d-----l~d~~---------------------- 52 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKED-VVKEINLISRPKSLEKLKGLRLD-----IYDAL---------------------- 52 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCC-CCCEEEEEECcccccccccccch-----hhhch----------------------
Confidence 589999999999999999999986 33579999995411100000000 00000
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh-hhHHHHHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD-EHIRTAYNINVKGTQTILAL 207 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~-~~~~~~~~~nv~~~~~ll~~ 207 (366)
........+.. . . ++. .+.++|+||-++|..... ++..+....|....+.+.+.
T Consensus 53 -------------~~~~~~~~i~~---~--~------d~~-~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~ 107 (309)
T cd05294 53 -------------AAAGIDAEIKI---S--S------DLS-DVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQ 107 (309)
T ss_pred -------------hccCCCcEEEE---C--C------CHH-HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 00001111111 1 1 233 378999999999976533 34567788899999999998
Q ss_pred HHhcCCCcEEEEeeC
Q psy17528 208 AKRMKGLKSFVHVST 222 (366)
Q Consensus 208 a~~~~~~~~~v~iSS 222 (366)
+.+...-..++.+++
T Consensus 108 i~~~~~~~~viv~~n 122 (309)
T cd05294 108 IAEFAPDTKILVVTN 122 (309)
T ss_pred HHHHCCCeEEEEeCC
Confidence 877633335566665
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0049 Score=60.73 Aligned_cols=117 Identities=14% Similarity=0.025 Sum_probs=75.3
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCcc-----EEEEEEcCCCC--cC-HHHHHHHHhhhhhhhhhhhcCCCCCCcccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIR-----KIILLIRTRGS--TS-ITQRVYNYFNDAVFDRMRLECPNYADKVDI 119 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~-----~V~~~~R~~~~--~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (366)
..+|.|+||+|.+|+.++..|+..+ -+. .++++++.+.. .. ....+.+.
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~-~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~---------------------- 59 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGE-LFGKDQPVVLHLLDIPPAMKALEGVAMELEDC---------------------- 59 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCC-cccCCCccEEEEEecCCcccccchHHHHHhhc----------------------
Confidence 4689999999999999999998875 345 78999886532 11 11111110
Q ss_pred ccccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh-hhhHHHHHHHHH
Q psy17528 120 GITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF-DEHIRTAYNINV 198 (366)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~-~~~~~~~~~~nv 198 (366)
.......+.+. . ...+.++++|+||.+||...- .++..+++..|+
T Consensus 60 ---------------------~~~~~~~~~i~-~------------~~~~~~~daDvVVitAG~~~k~g~tR~dll~~Na 105 (323)
T TIGR01759 60 ---------------------AFPLLAGVVAT-T------------DPEEAFKDVDAALLVGAFPRKPGMERADLLSKNG 105 (323)
T ss_pred ---------------------cccccCCcEEe-c------------ChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHH
Confidence 00001112211 1 123556899999999998643 346678999999
Q ss_pred HHHHHHHHHHHhcCC-CcEEEEee
Q psy17528 199 KGTQTILALAKRMKG-LKSFVHVS 221 (366)
Q Consensus 199 ~~~~~ll~~a~~~~~-~~~~v~iS 221 (366)
...+.+.+.+.+... -..++.+|
T Consensus 106 ~i~~~i~~~i~~~~~~~~iiivvs 129 (323)
T TIGR01759 106 KIFKEQGKALNKVAKKDVKVLVVG 129 (323)
T ss_pred HHHHHHHHHHHhhCCCCeEEEEeC
Confidence 999999999888733 23344444
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0045 Score=59.01 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=31.0
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
|+|||+||||. |..|++.|.+.| +.|++.+++..
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g---~~v~~s~~t~~ 34 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQG---IEILVTVTTSE 34 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCC---CeEEEEEccCC
Confidence 57999999999 999999999998 89999999864
|
This enzyme was found to be a monomer by gel filtration. |
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0028 Score=61.28 Aligned_cols=37 Identities=14% Similarity=0.125 Sum_probs=32.1
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+++++++|+|| |.+|.+++..|.+.| +.+|+++.|+.
T Consensus 124 ~~~k~vlI~GA-GGagrAia~~La~~G--~~~V~I~~R~~ 160 (289)
T PRK12548 124 VKGKKLTVIGA-GGAATAIQVQCALDG--AKEITIFNIKD 160 (289)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCC--CCEEEEEeCCc
Confidence 46789999998 899999999999987 35699999975
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.014 Score=57.08 Aligned_cols=117 Identities=11% Similarity=0.076 Sum_probs=75.0
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
+||.|+|++|.+|++++..|...+ -+..+.+++.+ ......-.+.+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~-~~~elvLiDi~-~a~g~alDL~~-------------------------------- 46 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNP-LVSELALYDIV-NTPGVAADLSH-------------------------------- 46 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-CCcEEEEEecC-ccceeehHhHh--------------------------------
Confidence 489999999999999999988775 45788888886 21111111111
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh-hhhHHHHHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF-DEHIRTAYNINVKGTQTILAL 207 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~-~~~~~~~~~~nv~~~~~ll~~ 207 (366)
. .....+.... .+ + ++.+.++++|+||-+||.... .+...++.+.|....+.+.+.
T Consensus 47 ------------~---~~~~~i~~~~-~~-~------~~y~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~ 103 (310)
T cd01337 47 ------------I---NTPAKVTGYL-GP-E------ELKKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATA 103 (310)
T ss_pred ------------C---CCcceEEEec-CC-C------chHHhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 0 0111222110 11 1 234667899999999998643 346778999999999999998
Q ss_pred HHhcCCCcEEEEeeC
Q psy17528 208 AKRMKGLKSFVHVST 222 (366)
Q Consensus 208 a~~~~~~~~~v~iSS 222 (366)
..+...-..++.+|.
T Consensus 104 i~~~~p~a~vivvtN 118 (310)
T cd01337 104 VAKACPKALILIISN 118 (310)
T ss_pred HHHhCCCeEEEEccC
Confidence 888633233444443
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.011 Score=58.41 Aligned_cols=119 Identities=13% Similarity=0.063 Sum_probs=75.9
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCcc-----EEEEEEcCCCC---cCHHHHHHHHhhhhhhhhhhhcCCCCCCccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIR-----KIILLIRTRGS---TSITQRVYNYFNDAVFDRMRLECPNYADKVD 118 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~-----~V~~~~R~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 118 (366)
++++|.|+|++|.+|+.++..|...+ -+. .+.++++.+.. ......+.+.
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~-~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~--------------------- 60 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGD-MLGKDQPVILQLLEIPPALKALEGVVMELDDC--------------------- 60 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhh-hcCCCCccEEEEEecCCcccccceeehhhhhh---------------------
Confidence 36799999999999999999998765 234 78899886432 1111111110
Q ss_pred cccccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh-hhhHHHHHHHH
Q psy17528 119 IGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF-DEHIRTAYNIN 197 (366)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~-~~~~~~~~~~n 197 (366)
.......+.+.. ...+.++++|+||-+||...- .++..+....|
T Consensus 61 ----------------------~~~~~~~~~i~~-------------~~y~~~~daDiVVitaG~~~k~g~tR~dll~~N 105 (326)
T PRK05442 61 ----------------------AFPLLAGVVITD-------------DPNVAFKDADVALLVGARPRGPGMERKDLLEAN 105 (326)
T ss_pred ----------------------hhhhcCCcEEec-------------ChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHH
Confidence 000011222211 123556899999999997543 34677889999
Q ss_pred HHHHHHHHHHHHhcCCC-cEEEEeeC
Q psy17528 198 VKGTQTILALAKRMKGL-KSFVHVST 222 (366)
Q Consensus 198 v~~~~~ll~~a~~~~~~-~~~v~iSS 222 (366)
....+.+.+.+.+..+. ..++.+|.
T Consensus 106 a~i~~~i~~~i~~~~~~~~iiivvsN 131 (326)
T PRK05442 106 GAIFTAQGKALNEVAARDVKVLVVGN 131 (326)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 99999999998885333 34455553
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.018 Score=56.50 Aligned_cols=116 Identities=13% Similarity=0.115 Sum_probs=75.9
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCH-HHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSI-TQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++||.|+|+ |.+|+.++..|+..| -+..+.+++++.+.... ...+.+
T Consensus 5 ~~~ki~iiGa-G~vG~~~a~~l~~~~-~~~el~L~D~~~~~~~g~~~Dl~~----------------------------- 53 (315)
T PRK00066 5 QHNKVVLVGD-GAVGSSYAYALVNQG-IADELVIIDINKEKAEGDAMDLSH----------------------------- 53 (315)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcC-CCCEEEEEeCCCchhHHHHHHHHh-----------------------------
Confidence 4679999997 999999999998885 44689999997653211 111111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh-hhhHHHHHHHHHHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF-DEHIRTAYNINVKGTQTI 204 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~-~~~~~~~~~~nv~~~~~l 204 (366)
......++.+..+ .+ +.++++|+||.+||...- ..+..+....|....+.+
T Consensus 54 ---------------~~~~~~~~~i~~~------------~~-~~~~~adivIitag~~~k~g~~R~dll~~N~~i~~~i 105 (315)
T PRK00066 54 ---------------AVPFTSPTKIYAG------------DY-SDCKDADLVVITAGAPQKPGETRLDLVEKNLKIFKSI 105 (315)
T ss_pred ---------------hccccCCeEEEeC------------CH-HHhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 1001122333322 23 336899999999998643 346678889999999999
Q ss_pred HHHHHhcCCCcEEEEee
Q psy17528 205 LALAKRMKGLKSFVHVS 221 (366)
Q Consensus 205 l~~a~~~~~~~~~v~iS 221 (366)
++.+.+...-..++.+|
T Consensus 106 ~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 106 VGEVMASGFDGIFLVAS 122 (315)
T ss_pred HHHHHHhCCCeEEEEcc
Confidence 98888762222344444
|
|
| >KOG2733|consensus | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0036 Score=61.72 Aligned_cols=89 Identities=16% Similarity=0.212 Sum_probs=61.5
Q ss_pred eEEEeCCcchHHHHHHHHHHHhC-CCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 50 TIFITGATGFLGSLLVEKLLRCC-PQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 50 ~ilItGatG~IG~~lv~~Ll~~g-~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
.++|.||+||.|..+++.++..+ ..-..+-+..|++. +|.+.+.. --..
T Consensus 7 DvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~------KL~~vL~~----~~~k-------------------- 56 (423)
T KOG2733|consen 7 DVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEK------KLQEVLEK----VGEK-------------------- 56 (423)
T ss_pred eEEEEccccccceeeHHHHhhhhcccCceEEEecCCHH------HHHHHHHH----Hhhc--------------------
Confidence 48999999999999999999943 12256777777743 33333321 0001
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF 186 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~ 186 (366)
......+..++.+|..|+. .+.+.++++.+|+||+|...+
T Consensus 57 ------------~~~~ls~~~i~i~D~~n~~------Sl~emak~~~vivN~vGPyR~ 96 (423)
T KOG2733|consen 57 ------------TGTDLSSSVILIADSANEA------SLDEMAKQARVIVNCVGPYRF 96 (423)
T ss_pred ------------cCCCcccceEEEecCCCHH------HHHHHHhhhEEEEecccccee
Confidence 1111233338899999988 899999999999999997543
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.01 Score=58.82 Aligned_cols=42 Identities=29% Similarity=0.439 Sum_probs=35.8
Q ss_pred cccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 41 PIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 41 ~~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.-++.++.++|+|.|+ |.+|+.++..|.+.| +.+|.+++...
T Consensus 17 ~~Q~~L~~~~VlVvG~-GglGs~va~~La~aG--vg~i~lvD~D~ 58 (339)
T PRK07688 17 EGQQKLREKHVLIIGA-GALGTANAEMLVRAG--VGKVTIVDRDY 58 (339)
T ss_pred HHHHHhcCCcEEEECC-CHHHHHHHHHHHHcC--CCeEEEEeCCc
Confidence 3467778899999996 999999999999996 57899999864
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0081 Score=50.30 Aligned_cols=35 Identities=31% Similarity=0.565 Sum_probs=30.6
Q ss_pred eEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 50 ~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+|.|+||||++|+.+++.|.+. +.+.-+.++.++.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h-p~~e~~~~~~~~~ 35 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH-PDFELVALVSSSR 35 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-STEEEEEEEESTT
T ss_pred CEEEECCCCHHHHHHHHHHhcC-CCccEEEeeeecc
Confidence 6899999999999999999996 7777777777776
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0075 Score=54.74 Aligned_cols=36 Identities=25% Similarity=0.425 Sum_probs=26.4
Q ss_pred CCCeEEEeC----------------CcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 47 KDQTIFITG----------------ATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 47 ~~~~ilItG----------------atG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
++++||||+ ++|-.|.+|++.+...| ..|+++....
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~G---a~V~li~g~~ 53 (185)
T PF04127_consen 2 KGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRG---AEVTLIHGPS 53 (185)
T ss_dssp TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT----EEEEEE-TT
T ss_pred CCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCC---CEEEEEecCc
Confidence 466777775 47889999999999999 8999888873
|
These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A. |
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0063 Score=60.09 Aligned_cols=39 Identities=26% Similarity=0.344 Sum_probs=32.8
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
+++|+|.||||++|.+|++.|.++++.+.++..+.+..+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~ 39 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARS 39 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEcccc
Confidence 468999999999999999999998766667788877643
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.037 Score=54.89 Aligned_cols=42 Identities=31% Similarity=0.414 Sum_probs=35.8
Q ss_pred cccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 41 PIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 41 ~~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.-++.++.++|+|.|+ |.+|+++++.|.+.| +.+++++++..
T Consensus 17 ~~Q~~L~~~~VlIiG~-GglGs~va~~La~aG--vg~i~lvD~D~ 58 (338)
T PRK12475 17 EGQRKIREKHVLIVGA-GALGAANAEALVRAG--IGKLTIADRDY 58 (338)
T ss_pred HHHHhhcCCcEEEECC-CHHHHHHHHHHHHcC--CCEEEEEcCCc
Confidence 4467788899999996 779999999999997 57899999864
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.022 Score=55.88 Aligned_cols=115 Identities=12% Similarity=0.091 Sum_probs=73.6
Q ss_pred eEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccccc
Q psy17528 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNYF 129 (366)
Q Consensus 50 ~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (366)
||.|+|++|.||++++..|...+ -+..+.++++.+ .......+.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~-~~~elvL~Di~~-a~g~a~DL~---------------------------------- 44 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQP-YVSELSLYDIAG-AAGVAADLS---------------------------------- 44 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCC-CCcEEEEecCCC-CcEEEchhh----------------------------------
Confidence 58999999999999999998875 457888998865 111100000
Q ss_pred chhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh-hhhHHHHHHHHHHHHHHHHHHH
Q psy17528 130 NDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF-DEHIRTAYNINVKGTQTILALA 208 (366)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~-~~~~~~~~~~nv~~~~~ll~~a 208 (366)
. ......+.... .+ + +..+.++++|+||-+||.... .++..+....|....+.+.+.+
T Consensus 45 -----------~--~~~~~~i~~~~-~~-~------~~~~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i 103 (312)
T TIGR01772 45 -----------H--IPTAASVKGFS-GE-E------GLENALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAV 103 (312)
T ss_pred -----------c--CCcCceEEEec-CC-C------chHHHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHH
Confidence 0 00112222100 01 1 234567899999999997543 3466778999999999999888
Q ss_pred HhcCCCcE-EEEeeC
Q psy17528 209 KRMKGLKS-FVHVST 222 (366)
Q Consensus 209 ~~~~~~~~-~v~iSS 222 (366)
.+. .... ++.+|.
T Consensus 104 ~~~-~p~~iiivvsN 117 (312)
T TIGR01772 104 AES-CPKAMILVITN 117 (312)
T ss_pred HHh-CCCeEEEEecC
Confidence 876 3333 444443
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.045 Score=53.62 Aligned_cols=115 Identities=12% Similarity=0.115 Sum_probs=74.3
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCH-HHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSI-TQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+||.|+|+ |.+|+.++..|+..| -...+.+++.+.+.... ...+.+
T Consensus 4 ~Ki~IiGa-G~VG~~~a~~l~~~~-~~~el~LiD~~~~~~~g~a~Dl~~------------------------------- 50 (312)
T cd05293 4 NKVTVVGV-GQVGMACAISILAKG-LADELVLVDVVEDKLKGEAMDLQH------------------------------- 50 (312)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcC-CCCEEEEEeCCccHHHHHHHHHHH-------------------------------
Confidence 58999996 999999999998885 56789999987643211 111111
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh-hhHHHHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD-EHIRTAYNINVKGTQTILA 206 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~-~~~~~~~~~nv~~~~~ll~ 206 (366)
.........+... . +++. ++++|+||-+||...-+ ++..+++..|....+.+.+
T Consensus 51 -------------~~~~~~~~~v~~~-----~------dy~~-~~~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~ 105 (312)
T cd05293 51 -------------GSAFLKNPKIEAD-----K------DYSV-TANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIP 105 (312)
T ss_pred -------------hhccCCCCEEEEC-----C------CHHH-hCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 0001111122211 1 2333 68999999999976533 4566788999999999999
Q ss_pred HHHhcCCCcEEEEee
Q psy17528 207 LAKRMKGLKSFVHVS 221 (366)
Q Consensus 207 ~a~~~~~~~~~v~iS 221 (366)
.+.+...-..++.+|
T Consensus 106 ~i~~~~p~~~vivvs 120 (312)
T cd05293 106 KLVKYSPNAILLVVS 120 (312)
T ss_pred HHHHhCCCcEEEEcc
Confidence 888873223344444
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.044 Score=53.59 Aligned_cols=114 Identities=16% Similarity=0.116 Sum_probs=75.7
Q ss_pred eEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHH-HHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSIT-QRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 50 ~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
||.|.|+ |.+|+.++..|+..+ -+..+.+++..++..... ..+.+.
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~-~~~elvL~Di~~~~a~g~a~DL~~~------------------------------- 47 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALG-LFSEIVLIDVNEGVAEGEALDFHHA------------------------------- 47 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcC-CCCEEEEEeCCcchhhHHHHHHHhh-------------------------------
Confidence 5889997 999999999999885 557899999876532211 111110
Q ss_pred cchhhhhhccccCCCCC-CcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh-hh--HHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYA-DKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD-EH--IRTAYNINVKGTQTI 204 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~-~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~-~~--~~~~~~~nv~~~~~l 204 (366)
..-.. ..+.+..+| + +.++++|+||-+||...-+ ++ ..++++.|....+.+
T Consensus 48 ------------~~~~~~~~~~i~~~~------------y-~~~~~aDivvitaG~~~kpg~tr~R~dll~~N~~I~~~i 102 (307)
T cd05290 48 ------------TALTYSTNTKIRAGD------------Y-DDCADADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREI 102 (307)
T ss_pred ------------hccCCCCCEEEEECC------------H-HHhCCCCEEEECCCCCCCCCCCchHHHHHHHHHHHHHHH
Confidence 11011 234454433 2 3468999999999986433 33 467889999999999
Q ss_pred HHHHHhcCCCcEEEEeeC
Q psy17528 205 LALAKRMKGLKSFVHVST 222 (366)
Q Consensus 205 l~~a~~~~~~~~~v~iSS 222 (366)
.+.+.+. +..-++.+-|
T Consensus 103 ~~~i~~~-~p~~i~ivvs 119 (307)
T cd05290 103 MGNITKV-TKEAVIILIT 119 (307)
T ss_pred HHHHHHh-CCCeEEEEec
Confidence 9998887 4444444444
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >KOG1202|consensus | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.015 Score=64.76 Aligned_cols=169 Identities=18% Similarity=0.268 Sum_probs=111.7
Q ss_pred ccCC-CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccc
Q psy17528 44 EFYK-DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGIT 122 (366)
Q Consensus 44 ~~~~-~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (366)
.+++ .++.+|+||-|..|..|+..|+++| ..++++.+|+.-.+....+..+....
T Consensus 1763 t~~hpeksYii~GGLGGFGLELaqWLi~RG--ar~lVLtSRsGirtGYQa~~vrrWr~---------------------- 1818 (2376)
T KOG1202|consen 1763 TYCHPEKSYIIVGGLGGFGLELAQWLIQRG--ARKLVLTSRSGIRTGYQALMVRRWRR---------------------- 1818 (2376)
T ss_pred hhcCccceEEEeccccchhHHHHHHHHhcC--ceEEEEeccccchhhHHHHHHHHHHh----------------------
Confidence 3443 4789999999999999999999997 47888888887776665554432111
Q ss_pred cccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh------CcCEEEEcCcccCh-------hhh
Q psy17528 123 HRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS------QTTIIFHIAATVRF-------DEH 189 (366)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~------~~d~Vih~a~~~~~-------~~~ 189 (366)
..-++.+-.-|++... .-..+++ -+--|||+|+.... ..+
T Consensus 1819 ---------------------~GVqV~vsT~nitt~~------ga~~Li~~s~kl~~vGGiFnLA~VLRD~LiEnQt~kn 1871 (2376)
T KOG1202|consen 1819 ---------------------RGVQVQVSTSNITTAE------GARGLIEESNKLGPVGGIFNLAAVLRDGLIENQTPKN 1871 (2376)
T ss_pred ---------------------cCeEEEEecccchhhh------hHHHHHHHhhhcccccchhhHHHHHHhhhhcccChhH
Confidence 1234444455665443 4445554 35788898886431 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 190 IRTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 190 ~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
..++-+..+.++.+|=+..++. ..++.||.+||..+--.+..
T Consensus 1872 Fk~va~pK~~~Ti~LD~~sRe~C~~LdyFv~FSSvscGRGN~G------------------------------------- 1914 (2376)
T KOG1202|consen 1872 FKDVAKPKYSGTINLDRVSREICPELDYFVVFSSVSCGRGNAG------------------------------------- 1914 (2376)
T ss_pred HHhhhccceeeeeehhhhhhhhCcccceEEEEEeecccCCCCc-------------------------------------
Confidence 3334444566677766665553 45678999999754422211
Q ss_pred CCchHHHHHHHHHHHHHHhc-CCCCEEEEecCcc
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-HELPICVLRPSIV 301 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-~gl~~~ilRp~~v 301 (366)
...||.+....|+++.+.. .|+|.+.+.-|.|
T Consensus 1915 -QtNYG~aNS~MERiceqRr~~GfPG~AiQWGAI 1947 (2376)
T KOG1202|consen 1915 -QTNYGLANSAMERICEQRRHEGFPGTAIQWGAI 1947 (2376)
T ss_pred -ccccchhhHHHHHHHHHhhhcCCCcceeeeecc
Confidence 1679999999999998887 7888887776654
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.042 Score=53.53 Aligned_cols=117 Identities=20% Similarity=0.154 Sum_probs=73.9
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
++|.|+|+ |.+|+.++..|+..| -...|.+++|+.... +.+..-+.+.
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g-~~~ei~l~D~~~~~~---~~~a~dL~~~--------------------------- 48 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQG-IADELVLIDINEEKA---EGEALDLEDA--------------------------- 48 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcC-CCCEEEEEeCCcchh---hHhHhhHHHH---------------------------
Confidence 47999995 999999999999886 235899999976532 1111111100
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh-hhHHHHHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD-EHIRTAYNINVKGTQTILAL 207 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~-~~~~~~~~~nv~~~~~ll~~ 207 (366)
.......+.+..+ .+. .+.++|+||.++|..... ++..+..+.|....+.+.+.
T Consensus 49 ------------~~~~~~~~~i~~~------------~~~-~l~~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~ 103 (306)
T cd05291 49 ------------LAFLPSPVKIKAG------------DYS-DCKDADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPK 103 (306)
T ss_pred ------------hhccCCCeEEEcC------------CHH-HhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 0000112222221 122 357999999999976433 45667889999999999999
Q ss_pred HHhcCCCcEEEEeeC
Q psy17528 208 AKRMKGLKSFVHVST 222 (366)
Q Consensus 208 a~~~~~~~~~v~iSS 222 (366)
+++...-..++.+|.
T Consensus 104 i~~~~~~~~vivvsN 118 (306)
T cd05291 104 IKASGFDGIFLVASN 118 (306)
T ss_pred HHHhCCCeEEEEecC
Confidence 888633333444443
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.05 Score=53.28 Aligned_cols=116 Identities=18% Similarity=0.118 Sum_probs=74.8
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHH-HHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSIT-QRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+||.|+|| |.||+.++..|+..+. ...+.+++..+...... ..+.+ .
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~-~~el~LiDi~~~~~~G~a~DL~~---------------------------~--- 48 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGL-GSELVLIDINEEKAEGVALDLSH---------------------------A--- 48 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccc-cceEEEEEcccccccchhcchhh---------------------------c---
Confidence 47999999 9999999999977742 24888999884432210 00000 0
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhh-hHHHHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDE-HIRTAYNINVKGTQTILA 206 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~-~~~~~~~~nv~~~~~ll~ 206 (366)
.......+ .+.++ . + ...++++|+|+-+||...-+. ...++.+.|....+.+.+
T Consensus 49 -------------~~~~~~~~-~i~~~-~---------~-y~~~~~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~ 103 (313)
T COG0039 49 -------------AAPLGSDV-KITGD-G---------D-YEDLKGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAK 103 (313)
T ss_pred -------------chhccCce-EEecC-C---------C-hhhhcCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHH
Confidence 00001111 22222 1 1 134689999999999876544 777899999999999999
Q ss_pred HHHhcCCCcEEEEeeC
Q psy17528 207 LAKRMKGLKSFVHVST 222 (366)
Q Consensus 207 ~a~~~~~~~~~v~iSS 222 (366)
...+. ..+-++.+-|
T Consensus 104 ~i~~~-~~d~ivlVvt 118 (313)
T COG0039 104 AIAKY-APDAIVLVVT 118 (313)
T ss_pred HHHhh-CCCeEEEEec
Confidence 88887 4445554444
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.022 Score=58.09 Aligned_cols=36 Identities=25% Similarity=0.293 Sum_probs=32.0
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+++++|+|+|+++ +|..+++.|++.| ++|++.++..
T Consensus 3 ~~~k~v~iiG~g~-~G~~~A~~l~~~G---~~V~~~d~~~ 38 (450)
T PRK14106 3 LKGKKVLVVGAGV-SGLALAKFLKKLG---AKVILTDEKE 38 (450)
T ss_pred cCCCEEEEECCCH-HHHHHHHHHHHCC---CEEEEEeCCc
Confidence 4679999999877 9999999999999 8899988864
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.038 Score=56.64 Aligned_cols=119 Identities=15% Similarity=0.071 Sum_probs=77.1
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHh-------CCCccEEEEEEcCCCCcCHHH-HHHHHhhhhhhhhhhhcCCCCCCccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRC-------CPQIRKIILLIRTRGSTSITQ-RVYNYFNDAVFDRMRLECPNYADKVD 118 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~-------g~~~~~V~~~~R~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~ 118 (366)
+.-+|.|+|++|.||++++..|+.. + -...+++++++.+...... .+.+- .
T Consensus 99 ~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~-i~~eLvliD~~~~~a~G~amDL~da--------a------------ 157 (444)
T PLN00112 99 KLINVAVSGAAGMISNHLLFKLASGEVFGPDQP-IALKLLGSERSKQALEGVAMELEDS--------L------------ 157 (444)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhcccccCCCC-cccEEEEEcCCcchhHHHHHHHHHh--------h------------
Confidence 3568999999999999999999877 3 2347888888765432111 11110 0
Q ss_pred cccccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh-hhhHHHHHHHH
Q psy17528 119 IGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF-DEHIRTAYNIN 197 (366)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~-~~~~~~~~~~n 197 (366)
.+ ....+.+..+| + +.++++|+||-+||.... .++..++.+.|
T Consensus 158 ----------------------~~-~~~~v~i~~~~------------y-e~~kdaDiVVitAG~prkpG~tR~dLl~~N 201 (444)
T PLN00112 158 ----------------------YP-LLREVSIGIDP------------Y-EVFQDAEWALLIGAKPRGPGMERADLLDIN 201 (444)
T ss_pred ----------------------hh-hcCceEEecCC------------H-HHhCcCCEEEECCCCCCCCCCCHHHHHHHH
Confidence 00 11123222221 2 446899999999998643 34667899999
Q ss_pred HHHHHHHHHHHHh-cCCCcEEEEeeC
Q psy17528 198 VKGTQTILALAKR-MKGLKSFVHVST 222 (366)
Q Consensus 198 v~~~~~ll~~a~~-~~~~~~~v~iSS 222 (366)
+...+.+.+.+.+ ...-..++.+|.
T Consensus 202 ~~I~k~i~~~I~~~a~p~~ivIVVsN 227 (444)
T PLN00112 202 GQIFAEQGKALNEVASRNVKVIVVGN 227 (444)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEcCC
Confidence 9999999999888 433334555554
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.052 Score=49.63 Aligned_cols=42 Identities=21% Similarity=0.328 Sum_probs=35.0
Q ss_pred cccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 41 PIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 41 ~~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
..++.++..+|+|.|+.| +|+++++.|...| +.++++++...
T Consensus 12 ~~q~~L~~s~VlviG~gg-lGsevak~L~~~G--Vg~i~lvD~d~ 53 (198)
T cd01485 12 EAQNKLRSAKVLIIGAGA-LGAEIAKNLVLAG--IDSITIVDHRL 53 (198)
T ss_pred HHHHHHhhCcEEEECCCH-HHHHHHHHHHHcC--CCEEEEEECCc
Confidence 345667789999999766 9999999999996 68899998864
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.052 Score=49.71 Aligned_cols=42 Identities=21% Similarity=0.228 Sum_probs=35.6
Q ss_pred cccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 41 PIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 41 ~~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
..++.++.++|+|.| .|.+|+++++.|...| +.++++++...
T Consensus 14 ~~q~kl~~~~VlviG-~GglGs~ia~~La~~G--v~~i~lvD~d~ 55 (202)
T TIGR02356 14 EGQQRLLNSHVLIIG-AGGLGSPAALYLAGAG--VGTIVIVDDDH 55 (202)
T ss_pred HHHHHhcCCCEEEEC-CCHHHHHHHHHHHHcC--CCeEEEecCCE
Confidence 346777889999999 5889999999999996 57899999874
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >KOG1494|consensus | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.03 Score=53.76 Aligned_cols=118 Identities=18% Similarity=0.139 Sum_probs=79.8
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+-+|.|.||+|.||+-|..-|-.+ |.+....+.+-...+ |++-++
T Consensus 28 ~~KVAvlGAaGGIGQPLSLLlK~n-p~Vs~LaLYDi~~~~--------------------------------GVaaDl-- 72 (345)
T KOG1494|consen 28 GLKVAVLGAAGGIGQPLSLLLKLN-PLVSELALYDIANTP--------------------------------GVAADL-- 72 (345)
T ss_pred cceEEEEecCCccCccHHHHHhcC-cccceeeeeecccCC--------------------------------cccccc--
Confidence 568999999999999987766555 788877776665321 111110
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh-hhHHHHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD-EHIRTAYNINVKGTQTILA 206 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~-~~~~~~~~~nv~~~~~ll~ 206 (366)
..-+....+.-+.+ . ..++.+++++|+|+-=||...-+ ...++++++|.-.++.+..
T Consensus 73 ------------SHI~T~s~V~g~~g----~------~~L~~al~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~ 130 (345)
T KOG1494|consen 73 ------------SHINTNSSVVGFTG----A------DGLENALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAA 130 (345)
T ss_pred ------------cccCCCCceeccCC----h------hHHHHHhcCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHH
Confidence 01111122222222 1 26889999999999999987644 4677899999999999999
Q ss_pred HHHhcCCCcEEEEeeC
Q psy17528 207 LAKRMKGLKSFVHVST 222 (366)
Q Consensus 207 ~a~~~~~~~~~v~iSS 222 (366)
++.+......+.++|.
T Consensus 131 aia~~cP~A~i~vIsN 146 (345)
T KOG1494|consen 131 AIAKCCPNALILVISN 146 (345)
T ss_pred HHHhhCccceeEeecC
Confidence 8887645555666665
|
|
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.075 Score=54.64 Aligned_cols=54 Identities=9% Similarity=0.037 Sum_probs=40.6
Q ss_pred HHHhCcCEEEEcCcccChh-hhHHHHHHHHHHHHHHHHHHHHhcCC-CcEEEEeeC
Q psy17528 169 LLISQTTIIFHIAATVRFD-EHIRTAYNINVKGTQTILALAKRMKG-LKSFVHVST 222 (366)
Q Consensus 169 ~~~~~~d~Vih~a~~~~~~-~~~~~~~~~nv~~~~~ll~~a~~~~~-~~~~v~iSS 222 (366)
+.++++|+||-+||..... ++..++.+.|....+...+.+.+... -.+++.+.|
T Consensus 195 ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~t 250 (452)
T cd05295 195 VAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGR 250 (452)
T ss_pred HHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeC
Confidence 5678999999999986433 46678899999999999998887633 145555554
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.079 Score=45.01 Aligned_cols=35 Identities=31% Similarity=0.455 Sum_probs=29.5
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.++|+|.|+ |.+|+.+++.|.+.| +.++++++...
T Consensus 2 ~~~v~iiG~-G~vGs~va~~L~~~G--v~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGA-GGVGSEVAKNLARSG--VGKITLVDDDI 36 (135)
T ss_dssp T-EEEEEST-SHHHHHHHHHHHHHT--TSEEEEEESSB
T ss_pred CCEEEEECc-CHHHHHHHHHHHHhC--CCceeecCCcc
Confidence 578999995 889999999999996 57899988853
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.04 Score=50.95 Aligned_cols=43 Identities=28% Similarity=0.267 Sum_probs=36.0
Q ss_pred CcccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 40 SPIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 40 ~~~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
...++.++..+|+|.|+ |.+|+.+++.|.+.| +.++++++...
T Consensus 20 ~~~q~~L~~~~V~ViG~-GglGs~ia~~La~~G--vg~i~lvD~D~ 62 (212)
T PRK08644 20 PKLLEKLKKAKVGIAGA-GGLGSNIAVALARSG--VGNLKLVDFDV 62 (212)
T ss_pred HHHHHHHhCCCEEEECc-CHHHHHHHHHHHHcC--CCeEEEEeCCE
Confidence 34567778899999995 889999999999986 57899988874
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.059 Score=50.95 Aligned_cols=42 Identities=21% Similarity=0.187 Sum_probs=35.7
Q ss_pred ccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 42 IQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 42 ~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
.++.++.++|+|.|+ |.+|+.+++.|...| +.++++++...-
T Consensus 26 ~Q~~L~~~~VliiG~-GglGs~va~~La~~G--vg~i~lvD~D~v 67 (245)
T PRK05690 26 GQEKLKAARVLVVGL-GGLGCAASQYLAAAG--VGTLTLVDFDTV 67 (245)
T ss_pred HHHHhcCCeEEEECC-CHHHHHHHHHHHHcC--CCEEEEEcCCEE
Confidence 367778899999997 999999999999986 578888888643
|
|
| >TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.013 Score=59.15 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=33.0
Q ss_pred cCCCCeEEEeCC----------------cchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 45 FYKDQTIFITGA----------------TGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 45 ~~~~~~ilItGa----------------tG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.+++++|+|||| +|.+|.++++.|...| .+|+++.+..
T Consensus 182 ~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~G---a~V~~~~g~~ 235 (390)
T TIGR00521 182 DLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRG---ADVTLITGPV 235 (390)
T ss_pred ccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCC---CEEEEeCCCC
Confidence 377999999998 4679999999999999 8888888764
|
This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity. |
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.087 Score=48.14 Aligned_cols=41 Identities=22% Similarity=0.376 Sum_probs=34.3
Q ss_pred ccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 42 IQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 42 ~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.++.++.++|+|.|+.| +|+++++.|...| +.++++++...
T Consensus 15 ~Q~~L~~s~VlIiG~gg-lG~evak~La~~G--Vg~i~lvD~d~ 55 (197)
T cd01492 15 AQKRLRSARILLIGLKG-LGAEIAKNLVLSG--IGSLTILDDRT 55 (197)
T ss_pred HHHHHHhCcEEEEcCCH-HHHHHHHHHHHcC--CCEEEEEECCc
Confidence 35667789999999755 9999999999996 68899988764
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.1 Score=51.95 Aligned_cols=115 Identities=12% Similarity=0.132 Sum_probs=74.0
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHH-HHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSIT-QRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+||.|+|+ |.||+.++..|+..+ -...+.+++.+++..... ..+.+
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~-l~~el~LiDi~~~~~~g~a~DL~~------------------------------- 84 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQD-LADELALVDVNPDKLRGEMLDLQH------------------------------- 84 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCC-CCCEEEEEeCCCchhhHHHHHHHh-------------------------------
Confidence 69999996 999999999998875 457899999976432111 11111
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh-hhhHHHHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF-DEHIRTAYNINVKGTQTILA 206 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~-~~~~~~~~~~nv~~~~~ll~ 206 (366)
.........+... . ++. .++++|+||-+||...- .++..+....|+...+.+.+
T Consensus 85 -------------~~~~~~~~~i~~~----~-------dy~-~~~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~ 139 (350)
T PLN02602 85 -------------AAAFLPRTKILAS----T-------DYA-VTAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIP 139 (350)
T ss_pred -------------hhhcCCCCEEEeC----C-------CHH-HhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHH
Confidence 0001112222211 0 122 36899999999997543 34566788999999999999
Q ss_pred HHHhcCCCcEEEEee
Q psy17528 207 LAKRMKGLKSFVHVS 221 (366)
Q Consensus 207 ~a~~~~~~~~~v~iS 221 (366)
.+.+...-..++.+|
T Consensus 140 ~I~~~~p~~ivivvt 154 (350)
T PLN02602 140 ELAKYSPDTILLIVS 154 (350)
T ss_pred HHHHHCCCeEEEEec
Confidence 888763333444454
|
|
| >COG4982 3-oxoacyl-[acyl-carrier protein] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.13 Score=54.19 Aligned_cols=43 Identities=26% Similarity=0.393 Sum_probs=35.3
Q ss_pred cccccCCCCeEEEeCCc-chHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 41 PIQEFYKDQTIFITGAT-GFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 41 ~~~~~~~~~~ilItGat-G~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
+....+.++.++||||+ |.||-.++..||+-| .+|++.+.+-+
T Consensus 389 p~~~~y~d~valVTGA~~gSIaa~Vv~~LL~gG---AtVI~TTS~~s 432 (866)
T COG4982 389 PNGGTYGDKVALVTGASKGSIAAAVVARLLAGG---ATVIATTSRLS 432 (866)
T ss_pred CCCCCcccceEEEecCCCcchHHHHHHHHHhCC---cEEEEEccccc
Confidence 44456778999999975 889999999999999 88888776544
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.035 Score=55.91 Aligned_cols=37 Identities=27% Similarity=0.495 Sum_probs=30.6
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
..++|.|.||||++|..+++.|.++ + ..+|..+.+..
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~h-P-~~el~~l~s~~ 73 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANH-P-DFEITVMTADR 73 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhC-C-CCeEEEEEChh
Confidence 4569999999999999999999888 3 36777877753
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.052 Score=46.39 Aligned_cols=38 Identities=21% Similarity=0.272 Sum_probs=33.2
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.+++++++|.|+ |..|+.++..|.+.| +.+|+++.|+.
T Consensus 9 ~l~~~~vlviGa-Gg~ar~v~~~L~~~g--~~~i~i~nRt~ 46 (135)
T PF01488_consen 9 DLKGKRVLVIGA-GGAARAVAAALAALG--AKEITIVNRTP 46 (135)
T ss_dssp TGTTSEEEEESS-SHHHHHHHHHHHHTT--SSEEEEEESSH
T ss_pred CcCCCEEEEECC-HHHHHHHHHHHHHcC--CCEEEEEECCH
Confidence 457899999996 889999999999996 47899999974
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.11 Score=52.33 Aligned_cols=54 Identities=11% Similarity=-0.032 Sum_probs=40.2
Q ss_pred HHHhCcCEEEEcCcccChh-hhHHHHHHHHHHHHHHHHHHHHhcCCCc-EEEEeeC
Q psy17528 169 LLISQTTIIFHIAATVRFD-EHIRTAYNINVKGTQTILALAKRMKGLK-SFVHVST 222 (366)
Q Consensus 169 ~~~~~~d~Vih~a~~~~~~-~~~~~~~~~nv~~~~~ll~~a~~~~~~~-~~v~iSS 222 (366)
+.++++|+||.+||...-+ ++..+.+..|+...+.+.+.+.+..+.. .++.+|.
T Consensus 116 ~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsN 171 (387)
T TIGR01757 116 EVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGN 171 (387)
T ss_pred HHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 4568999999999986433 4667889999999999999988843333 3455553
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.057 Score=50.92 Aligned_cols=42 Identities=26% Similarity=0.228 Sum_probs=35.6
Q ss_pred ccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 42 IQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 42 ~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
.++.++..+|+|.|+ |.+|+.+++.|.+.| +.++++++...-
T Consensus 18 ~q~~L~~~~VlvvG~-GglGs~va~~La~~G--vg~i~lvD~D~v 59 (240)
T TIGR02355 18 GQEALKASRVLIVGL-GGLGCAASQYLAAAG--VGNLTLLDFDTV 59 (240)
T ss_pred HHHHHhCCcEEEECc-CHHHHHHHHHHHHcC--CCEEEEEeCCcc
Confidence 356778899999995 889999999999986 689999888653
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.092 Score=48.14 Aligned_cols=42 Identities=33% Similarity=0.349 Sum_probs=35.3
Q ss_pred CcccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcC
Q psy17528 40 SPIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRT 84 (366)
Q Consensus 40 ~~~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~ 84 (366)
...++.++.++|+|.|+ |.+|+.++..|.+.| +.+|++++++
T Consensus 13 ~~~q~~L~~~~V~IvG~-GglGs~ia~~La~~G--vg~i~lvD~D 54 (200)
T TIGR02354 13 PKIVQKLEQATVAICGL-GGLGSNVAINLARAG--IGKLILVDFD 54 (200)
T ss_pred HHHHHHHhCCcEEEECc-CHHHHHHHHHHHHcC--CCEEEEECCC
Confidence 34466777899999996 789999999999997 4689999887
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.15 Score=49.74 Aligned_cols=104 Identities=19% Similarity=0.184 Sum_probs=68.6
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcC-HHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTS-ITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
++|.|.|+ |.+|+.++..|...| -...|.+++++..... ....+.+
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g-~~~ev~l~D~~~~~~~g~a~dl~~------------------------------- 47 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRG-LASEIVLVDINKAKAEGEAMDLAH------------------------------- 47 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcC-CCCEEEEEECCchhhhhHHHHHHc-------------------------------
Confidence 47999997 999999999999986 3478999999764321 1111111
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh-hhhHHHHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF-DEHIRTAYNINVKGTQTILA 206 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~-~~~~~~~~~~nv~~~~~ll~ 206 (366)
.........+..+ ++ +.++++|+||.+++.... ..+..+....|+...+.+.+
T Consensus 48 -------------~~~~~~~~~i~~~------------d~-~~l~~aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~ 101 (308)
T cd05292 48 -------------GTPFVKPVRIYAG------------DY-ADCKGADVVVITAGANQKPGETRLDLLKRNVAIFKEIIP 101 (308)
T ss_pred -------------cccccCCeEEeeC------------CH-HHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 0000111222221 12 336899999999997542 34556778889999999998
Q ss_pred HHHhc
Q psy17528 207 LAKRM 211 (366)
Q Consensus 207 ~a~~~ 211 (366)
.+.+.
T Consensus 102 ~l~~~ 106 (308)
T cd05292 102 QILKY 106 (308)
T ss_pred HHHHH
Confidence 88876
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.13 Score=48.01 Aligned_cols=41 Identities=29% Similarity=0.288 Sum_probs=34.2
Q ss_pred ccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 42 IQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 42 ~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.++.++.++|+|.| .|.+|+++++.|.+.| +.++++++...
T Consensus 15 ~q~~L~~~~VlivG-~GglGs~va~~La~~G--vg~i~lvD~D~ 55 (228)
T cd00757 15 GQEKLKNARVLVVG-AGGLGSPAAEYLAAAG--VGKLGLVDDDV 55 (228)
T ss_pred HHHHHhCCcEEEEC-CCHHHHHHHHHHHHcC--CCEEEEEcCCE
Confidence 35677789999999 5889999999999996 57888887753
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.11 Score=51.06 Aligned_cols=120 Identities=17% Similarity=0.192 Sum_probs=74.2
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
.+.++|.|+|| |.+|+.++..|...| +..|.+++++++.... +.+ ++ .+ .
T Consensus 3 ~~~~KI~IIGa-G~vG~~ia~~l~~~~--~~~l~L~Di~~~~~~g-~~l-Dl-~~----~-------------------- 52 (319)
T PTZ00117 3 VKRKKISMIGA-GQIGSTVALLILQKN--LGDVVLYDVIKGVPQG-KAL-DL-KH----F-------------------- 52 (319)
T ss_pred CCCcEEEEECC-CHHHHHHHHHHHHCC--CCeEEEEECCCccchh-HHH-HH-hh----h--------------------
Confidence 35679999996 999999999888775 3569999997654321 110 00 00 0
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh-hhhHHHHHHHHHHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF-DEHIRTAYNINVKGTQTI 204 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~-~~~~~~~~~~nv~~~~~l 204 (366)
.........+.. .. +++ .+.++|+||.+++.... .....+....|....+.+
T Consensus 53 ---------------~~~~~~~~~i~~-----~~------d~~-~l~~ADiVVitag~~~~~g~~r~dll~~n~~i~~~i 105 (319)
T PTZ00117 53 ---------------STLVGSNINILG-----TN------NYE-DIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSV 105 (319)
T ss_pred ---------------ccccCCCeEEEe-----CC------CHH-HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 000011122221 11 344 56899999999987542 345567888899888888
Q ss_pred HHHHHhcCCCcEEEEeeC
Q psy17528 205 LALAKRMKGLKSFVHVST 222 (366)
Q Consensus 205 l~~a~~~~~~~~~v~iSS 222 (366)
.+.+.+...-..++.+|.
T Consensus 106 ~~~i~~~~p~a~vivvsN 123 (319)
T PTZ00117 106 AESVKKYCPNAFVICVTN 123 (319)
T ss_pred HHHHHHHCCCeEEEEecC
Confidence 888887632233555554
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.14 Score=49.62 Aligned_cols=118 Identities=17% Similarity=0.094 Sum_probs=70.8
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+++|.|+|+ |.+|+.++..+...|. . .|++++++++.... ...++ .+..
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~-~-ev~L~D~~~~~~~~--~~~dl-----~~~~--------------------- 50 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKEL-G-DVVLFDIVEGVPQG--KALDI-----AEAA--------------------- 50 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-e-EEEEEECCCchhHH--HHHHH-----Hhhh---------------------
Confidence 579999998 9999999999988762 2 89999996543211 10010 0000
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh-hhhHHHHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF-DEHIRTAYNINVKGTQTILA 206 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~-~~~~~~~~~~nv~~~~~ll~ 206 (366)
.. ......+. ... ++ +.+.++|+||.+++.... .....+....|....+.+++
T Consensus 51 -------------~~-~~~~~~i~-----~~~------d~-~~~~~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~ 104 (307)
T PRK06223 51 -------------PV-EGFDTKIT-----GTN------DY-EDIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAE 104 (307)
T ss_pred -------------hh-cCCCcEEE-----eCC------CH-HHHCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHH
Confidence 00 00111111 111 23 346899999999986542 23445677788988888888
Q ss_pred HHHhcCCCcEEEEeeC
Q psy17528 207 LAKRMKGLKSFVHVST 222 (366)
Q Consensus 207 ~a~~~~~~~~~v~iSS 222 (366)
.+.+...-..++.+|.
T Consensus 105 ~i~~~~~~~~viv~tN 120 (307)
T PRK06223 105 GIKKYAPDAIVIVVTN 120 (307)
T ss_pred HHHHHCCCeEEEEecC
Confidence 8877533233555543
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.079 Score=52.85 Aligned_cols=41 Identities=24% Similarity=0.213 Sum_probs=35.2
Q ss_pred ccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 42 IQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 42 ~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
-++.++..+|+|.|+ |.+|+.+++.|...| +.++++++...
T Consensus 22 ~q~~L~~~~VlivG~-GGlGs~~a~~La~~G--vg~i~lvD~D~ 62 (355)
T PRK05597 22 GQQSLFDAKVAVIGA-GGLGSPALLYLAGAG--VGHITIIDDDT 62 (355)
T ss_pred HHHHHhCCeEEEECC-CHHHHHHHHHHHHcC--CCeEEEEeCCE
Confidence 467778899999996 889999999999986 68899998864
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.05 Score=61.14 Aligned_cols=80 Identities=16% Similarity=0.160 Sum_probs=56.1
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCcc------------EEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCC
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIR------------KIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYA 114 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~------------~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 114 (366)
++++|+|.|| |++|+..++.|.+. +.+. .|.+.+++.. ..+++.+.
T Consensus 568 ~~~rIlVLGA-G~VG~~~a~~La~~-~~~~~~~~~~~~~~~~lV~VaD~~~~---~a~~la~~----------------- 625 (1042)
T PLN02819 568 KSQNVLILGA-GRVCRPAAEYLASV-KTISYYGDDSEEPTDVHVIVASLYLK---DAKETVEG----------------- 625 (1042)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHhC-cCccccccccccccccEEEEECCCHH---HHHHHHHh-----------------
Confidence 4789999996 99999999999886 3322 3666666532 11222110
Q ss_pred CccccccccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCccc
Q psy17528 115 DKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATV 184 (366)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~ 184 (366)
.+++..+..|..|.+ ++..+++++|+||.+....
T Consensus 626 ------------------------------~~~~~~v~lDv~D~e------~L~~~v~~~DaVIsalP~~ 659 (1042)
T PLN02819 626 ------------------------------IENAEAVQLDVSDSE------SLLKYVSQVDVVISLLPAS 659 (1042)
T ss_pred ------------------------------cCCCceEEeecCCHH------HHHHhhcCCCEEEECCCch
Confidence 124567888988876 7888888999999998863
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.04 Score=54.56 Aligned_cols=37 Identities=30% Similarity=0.328 Sum_probs=30.0
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRT 84 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~ 84 (366)
+++|.|+||||++|..+++.|.++++.+..+..+...
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~ 40 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS 40 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc
Confidence 4789999999999999999999766566666666444
|
|
| >KOG4022|consensus | Back alignment and domain information |
|---|
Probab=95.51 E-value=1.1 Score=40.02 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=30.3
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
+..+|+|.|+-|-+|++.++.+..++ +-|..++-+++
T Consensus 2 sagrVivYGGkGALGSacv~~Fkann---ywV~siDl~eN 38 (236)
T KOG4022|consen 2 SAGRVIVYGGKGALGSACVEFFKANN---YWVLSIDLSEN 38 (236)
T ss_pred CCceEEEEcCcchHhHHHHHHHHhcC---eEEEEEeeccc
Confidence 35689999999999999999999997 66666666543
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.11 Score=52.24 Aligned_cols=40 Identities=20% Similarity=0.193 Sum_probs=34.1
Q ss_pred cccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 43 QEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 43 ~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
++.+++++|+|.|+ |.+|++++..|.+.| +.+++++++..
T Consensus 130 q~~l~~~~VlvvG~-GG~Gs~ia~~La~~G--vg~i~lvD~d~ 169 (376)
T PRK08762 130 QRRLLEARVLLIGA-GGLGSPAALYLAAAG--VGTLGIVDHDV 169 (376)
T ss_pred HHHHhcCcEEEECC-CHHHHHHHHHHHHcC--CCeEEEEeCCE
Confidence 45678899999985 889999999999997 57899999863
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.18 Score=49.30 Aligned_cols=117 Identities=15% Similarity=0.129 Sum_probs=71.1
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
++|.|.|+ |++|+.++..|...|.. .|+++++.+..... +..+++.. ..
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~--~VvlvDi~~~l~~g--~a~d~~~~-----~~--------------------- 50 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELA--DLVLLDVVEGIPQG--KALDMYEA-----SP--------------------- 50 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCC--eEEEEeCCCChhHH--HHHhhhhh-----hh---------------------
Confidence 47999996 99999999999988632 69999986442111 11111100 00
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh-hhhHHHHHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF-DEHIRTAYNINVKGTQTILAL 207 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~-~~~~~~~~~~nv~~~~~ll~~ 207 (366)
... .. +.+.-.. ++.. +.++|+||-++|.... .+...+....|......+++.
T Consensus 51 ------------~~~--~~-----~~i~~t~------d~~~-~~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~ 104 (305)
T TIGR01763 51 ------------VGG--FD-----TKVTGTN------NYAD-TANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGR 104 (305)
T ss_pred ------------ccC--CC-----cEEEecC------CHHH-hCCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHH
Confidence 000 01 1111111 2334 5789999999997643 235567888899999999888
Q ss_pred HHhcCCCcEEEEeeC
Q psy17528 208 AKRMKGLKSFVHVST 222 (366)
Q Consensus 208 a~~~~~~~~~v~iSS 222 (366)
+.+...-..++.+|.
T Consensus 105 I~~~~p~~~iIv~tN 119 (305)
T TIGR01763 105 IMEHSPNPIIVVVSN 119 (305)
T ss_pred HHHHCCCeEEEEecC
Confidence 777633334555554
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.04 Score=54.64 Aligned_cols=36 Identities=33% Similarity=0.452 Sum_probs=29.6
Q ss_pred eEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 50 ~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+|+|.||||++|..|++.|.++++.+.++..+.+..
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~ 36 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDR 36 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccc
Confidence 589999999999999999988776666666666654
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.064 Score=53.28 Aligned_cols=33 Identities=33% Similarity=0.607 Sum_probs=25.8
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEE-EEEc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKII-LLIR 83 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~-~~~R 83 (366)
++|.|.||||++|..+++.|.+. +.+ ++. ++++
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h-P~~-el~~l~~s 34 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH-PEV-EITYLVSS 34 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC-CCc-eEEEEecc
Confidence 47999999999999999999877 444 454 4343
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.28 Score=47.60 Aligned_cols=43 Identities=21% Similarity=0.176 Sum_probs=36.0
Q ss_pred cccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 41 PIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 41 ~~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
.-++.++..+|+|.|+ |.+|+.++..|.+.| |.++.+++...-
T Consensus 20 e~Q~kL~~s~VlIvG~-GGLGs~va~~LA~aG--VG~i~lvD~D~V 62 (287)
T PRK08223 20 TEQQRLRNSRVAIAGL-GGVGGIHLLTLARLG--IGKFTIADFDVF 62 (287)
T ss_pred HHHHHHhcCCEEEECC-CHHHHHHHHHHHHhC--CCeEEEEeCCCc
Confidence 4467788899999995 889999999999996 678888888643
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.21 Score=47.93 Aligned_cols=40 Identities=30% Similarity=0.405 Sum_probs=34.1
Q ss_pred cccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 43 QEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 43 ~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
++.++..+|+|.|+ |.+|+++++.|.+.| +.++++++...
T Consensus 25 ~~kL~~s~VlVvG~-GGVGs~vae~Lar~G--Vg~itLiD~D~ 64 (268)
T PRK15116 25 LQLFADAHICVVGI-GGVGSWAAEALARTG--IGAITLIDMDD 64 (268)
T ss_pred HHHhcCCCEEEECc-CHHHHHHHHHHHHcC--CCEEEEEeCCE
Confidence 56677899999985 889999999999996 67898888764
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.25 Score=49.88 Aligned_cols=42 Identities=21% Similarity=0.180 Sum_probs=35.0
Q ss_pred cccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 41 PIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 41 ~~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
..++.++..+|+|.|+ |.+|+.++..|...| +.++++++...
T Consensus 35 ~~q~~L~~~~VlviG~-GGlGs~va~~La~~G--vg~i~lvD~D~ 76 (392)
T PRK07878 35 DGQKRLKNARVLVIGA-GGLGSPTLLYLAAAG--VGTLGIVEFDV 76 (392)
T ss_pred HHHHHHhcCCEEEECC-CHHHHHHHHHHHHcC--CCeEEEECCCE
Confidence 3467778899999995 889999999999986 57888888764
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.33 Score=45.42 Aligned_cols=43 Identities=26% Similarity=0.274 Sum_probs=35.5
Q ss_pred cccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 41 PIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 41 ~~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
..++.+++.+|+|.|+ |.+|+++++.|.+.| +.++++++...-
T Consensus 20 ~~q~~L~~~~VlIiG~-GGlGs~ia~~La~~G--vg~i~lvD~D~v 62 (231)
T PRK08328 20 EGQEKLKKAKVAVVGV-GGLGSPVAYYLAAAG--VGRILLIDEQTP 62 (231)
T ss_pred HHHHHHhCCcEEEECC-CHHHHHHHHHHHHcC--CCEEEEEcCCcc
Confidence 3466777899999995 889999999999996 588988887643
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.24 Score=46.96 Aligned_cols=117 Identities=15% Similarity=0.055 Sum_probs=72.0
Q ss_pred EEEeCCcchHHHHHHHHHHHhCC-CccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccccc
Q psy17528 51 IFITGATGFLGSLLVEKLLRCCP-QIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNYF 129 (366)
Q Consensus 51 ilItGatG~IG~~lv~~Ll~~g~-~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (366)
|.|+||+|.+|+.++..|+..|. ....|.++++++..... ....+.+ .
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~---~~~dl~~--------~-------------------- 49 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKG---VAMDLQD--------A-------------------- 49 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchH---HHHHHHH--------h--------------------
Confidence 57999999999999999988851 34689999987643321 1111111 0
Q ss_pred chhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhh-hHHHHHHHHHHHHHHHHHHH
Q psy17528 130 NDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDE-HIRTAYNINVKGTQTILALA 208 (366)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~-~~~~~~~~nv~~~~~ll~~a 208 (366)
.... ...++.. + + +..+.++++|+||.+++...... ........|+...+.+.+.+
T Consensus 50 -----------~~~~-~~~~i~~---~--~------d~~~~~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i 106 (263)
T cd00650 50 -----------VEPL-ADIKVSI---T--D------DPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNI 106 (263)
T ss_pred -----------hhhc-cCcEEEE---C--C------chHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHH
Confidence 0000 1112221 1 1 33466789999999998754332 34456777999999999988
Q ss_pred HhcCCCcEEEEee
Q psy17528 209 KRMKGLKSFVHVS 221 (366)
Q Consensus 209 ~~~~~~~~~v~iS 221 (366)
.+...-..++.+|
T Consensus 107 ~~~~p~a~~i~~t 119 (263)
T cd00650 107 EKYSPDAWIIVVS 119 (263)
T ss_pred HHHCCCeEEEEec
Confidence 8763223344443
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.089 Score=46.97 Aligned_cols=37 Identities=14% Similarity=0.222 Sum_probs=31.2
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcC
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRT 84 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~ 84 (366)
.+++++|+|+|+++.+|..+++.|.+.| .+|+++.|+
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g---~~V~v~~r~ 77 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRN---ATVTVCHSK 77 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCC---CEEEEEECC
Confidence 4678999999997778999999999987 578877774
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.11 Score=50.51 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=30.7
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
++|.|+| +|.+|..++..|++.| ++|++.+|++.
T Consensus 3 ~~V~VIG-~G~mG~~iA~~la~~G---~~V~v~d~~~~ 36 (308)
T PRK06129 3 GSVAIIG-AGLIGRAWAIVFARAG---HEVRLWDADPA 36 (308)
T ss_pred cEEEEEC-ccHHHHHHHHHHHHCC---CeeEEEeCCHH
Confidence 5799999 7999999999999998 78999999854
|
|
| >TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.061 Score=50.26 Aligned_cols=32 Identities=28% Similarity=0.457 Sum_probs=25.7
Q ss_pred CeEEEe-CCcchHHHHHHHHHHHhCCCccEEEEEEc
Q psy17528 49 QTIFIT-GATGFLGSLLVEKLLRCCPQIRKIILLIR 83 (366)
Q Consensus 49 ~~ilIt-GatG~IG~~lv~~Ll~~g~~~~~V~~~~R 83 (366)
..-+|| .++|.||.++++.|.+.| ++|+++.+
T Consensus 15 ~VR~itN~SSGgIG~AIA~~la~~G---a~Vvlv~~ 47 (227)
T TIGR02114 15 SVRSITNHSTGHLGKIITETFLSAG---HEVTLVTT 47 (227)
T ss_pred CceeecCCcccHHHHHHHHHHHHCC---CEEEEEcC
Confidence 344455 458999999999999999 88888765
|
In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity. |
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.4 Score=48.74 Aligned_cols=36 Identities=11% Similarity=0.201 Sum_probs=31.5
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+++++|+|||++| +|...++.|.+.| .+|++.++..
T Consensus 3 ~~~k~v~v~G~g~-~G~s~a~~l~~~G---~~V~~~d~~~ 38 (447)
T PRK02472 3 YQNKKVLVLGLAK-SGYAAAKLLHKLG---ANVTVNDGKP 38 (447)
T ss_pred cCCCEEEEEeeCH-HHHHHHHHHHHCC---CEEEEEcCCC
Confidence 3578999999987 9999999999999 8898888764
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.7 Score=45.45 Aligned_cols=118 Identities=9% Similarity=0.079 Sum_probs=72.8
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
+.+||.|+| +|.+|+.++..+...|. ..|+++++++.... .+.+. ....
T Consensus 5 ~~~KI~IIG-aG~vG~~ia~~la~~gl--~~i~LvDi~~~~~~-~~~ld---------~~~~------------------ 53 (321)
T PTZ00082 5 KRRKISLIG-SGNIGGVMAYLIVLKNL--GDVVLFDIVKNIPQ-GKALD---------ISHS------------------ 53 (321)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCC--CeEEEEeCCCchhh-HHHHH---------HHhh------------------
Confidence 457999999 59999999998887763 46999999875421 11110 0000
Q ss_pred cccchhhhhhccccCCCCCCcEEEEe-ccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh-h-----hHHHHHHHHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVC-GQLEADTFGLSARDEELLISQTTIIFHIAATVRFD-E-----HIRTAYNINVK 199 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~-gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~-~-----~~~~~~~~nv~ 199 (366)
.........+.. + ++ +.++++|+||.+++..... . ...+....|+.
T Consensus 54 --------------~~~~~~~~~I~~~~------------d~-~~l~~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~ 106 (321)
T PTZ00082 54 --------------NVIAGSNSKVIGTN------------NY-EDIAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAK 106 (321)
T ss_pred --------------hhccCCCeEEEECC------------CH-HHhCCCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHH
Confidence 000011222221 2 23 3468999999999875321 2 44667788999
Q ss_pred HHHHHHHHHHhcCCCcEEEEeeC
Q psy17528 200 GTQTILALAKRMKGLKSFVHVST 222 (366)
Q Consensus 200 ~~~~ll~~a~~~~~~~~~v~iSS 222 (366)
..+.+.+.+.+...-..++.+|.
T Consensus 107 i~~~i~~~i~~~~p~a~~iv~sN 129 (321)
T PTZ00082 107 IMDEVAEGIKKYCPNAFVIVITN 129 (321)
T ss_pred HHHHHHHHHHHHCCCeEEEEecC
Confidence 88888888887632224555554
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.7 Score=41.27 Aligned_cols=33 Identities=30% Similarity=0.281 Sum_probs=28.3
Q ss_pred eEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 50 ~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+|+|.|+ |.+|+.+++.|.+.| +.++++++...
T Consensus 1 ~VlViG~-GglGs~ia~~La~~G--vg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSG--VGNLKLVDFDV 33 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcC--CCeEEEEeCCE
Confidence 5899995 889999999999986 56899998865
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.085 Score=52.43 Aligned_cols=37 Identities=19% Similarity=0.246 Sum_probs=29.7
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRT 84 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~ 84 (366)
..+|.|.||||++|..+++.|.++++.+..+..+...
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~ 43 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASA 43 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEcc
Confidence 4689999999999999999999876555666655444
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.64 Score=39.65 Aligned_cols=33 Identities=30% Similarity=0.398 Sum_probs=28.3
Q ss_pred eEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 50 ~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+|+|.|+ |.+|+++++.|.+.| +.++++++...
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~G--v~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSG--VGKITLIDFDT 33 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCC--CCEEEEEcCCC
Confidence 5899996 899999999999997 47888888764
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.3 Score=49.08 Aligned_cols=41 Identities=24% Similarity=0.338 Sum_probs=35.2
Q ss_pred ccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 42 IQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 42 ~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.++.++..+|+|.|+ |.+|+.++..|...| +.++++++...
T Consensus 35 ~q~~l~~~~VliiG~-GglG~~v~~~La~~G--vg~i~ivD~D~ 75 (370)
T PRK05600 35 QQERLHNARVLVIGA-GGLGCPAMQSLASAG--VGTITLIDDDT 75 (370)
T ss_pred HHHHhcCCcEEEECC-CHHHHHHHHHHHHcC--CCEEEEEeCCE
Confidence 467778899999995 889999999999986 57899988864
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.39 Score=45.09 Aligned_cols=40 Identities=25% Similarity=0.307 Sum_probs=33.6
Q ss_pred cccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 43 QEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 43 ~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
++.++..+|+|.|. |.+|+++++.|.+.| +.++++++...
T Consensus 6 ~~~L~~~~VlVvG~-GGvGs~va~~Lar~G--Vg~i~LvD~D~ 45 (231)
T cd00755 6 LEKLRNAHVAVVGL-GGVGSWAAEALARSG--VGKLTLIDFDV 45 (231)
T ss_pred HHHHhCCCEEEECC-CHHHHHHHHHHHHcC--CCEEEEECCCE
Confidence 45567889999995 889999999999996 57888888864
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.33 Score=49.09 Aligned_cols=41 Identities=27% Similarity=0.208 Sum_probs=34.9
Q ss_pred ccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 42 IQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 42 ~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.++.++..+|+|.|+ |.+|+.+++.|...| |.++++++...
T Consensus 32 ~q~~L~~~~VlivG~-GGlG~~va~~La~~G--vg~l~lvD~D~ 72 (390)
T PRK07411 32 GQKRLKAASVLCIGT-GGLGSPLLLYLAAAG--IGRIGIVDFDV 72 (390)
T ss_pred HHHHHhcCcEEEECC-CHHHHHHHHHHHHcC--CCEEEEECCCE
Confidence 467788899999995 789999999999996 68888888854
|
|
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.032 Score=54.77 Aligned_cols=34 Identities=38% Similarity=0.441 Sum_probs=29.0
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
..++|-|||||.|..++++|.+.| .+-.+..|+.
T Consensus 7 ~d~iiYGAtGy~G~lvae~l~~~g---~~~aLAgRs~ 40 (382)
T COG3268 7 YDIIIYGATGYAGGLVAEYLAREG---LTAALAGRSS 40 (382)
T ss_pred eeEEEEccccchhHHHHHHHHHcC---CchhhccCCH
Confidence 469999999999999999999998 4556777764
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.53 Score=45.86 Aligned_cols=112 Identities=16% Similarity=0.090 Sum_probs=71.2
Q ss_pred EeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCH-HHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccccch
Q psy17528 53 ITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSI-TQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNYFND 131 (366)
Q Consensus 53 ItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (366)
|.| +|.||+.++..|+..+ -+..+.+++++.+.... ...+.+.
T Consensus 1 iIG-aG~VG~~~a~~l~~~~-l~~el~L~Di~~~~~~g~a~Dl~~~---------------------------------- 44 (299)
T TIGR01771 1 IIG-AGNVGSSTAFALLNQG-IADEIVLIDINKDKAEGEAMDLQHA---------------------------------- 44 (299)
T ss_pred CCC-cCHHHHHHHHHHHhcC-CCCEEEEEeCCCChhhHHHHHHHHh----------------------------------
Confidence 456 4999999999998875 45689999997643211 1111111
Q ss_pred hhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh-hhHHHHHHHHHHHHHHHHHHHHh
Q psy17528 132 AVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD-EHIRTAYNINVKGTQTILALAKR 210 (366)
Q Consensus 132 ~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~-~~~~~~~~~nv~~~~~ll~~a~~ 210 (366)
.......+.+..+ .+ +.++++|+||-+||....+ ++..+.++.|+...+.+.+.+.+
T Consensus 45 ---------~~~~~~~~~i~~~------------~~-~~~~daDivVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~ 102 (299)
T TIGR01771 45 ---------ASFLPTPKKIRSG------------DY-SDCKDADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVK 102 (299)
T ss_pred ---------hcccCCCeEEecC------------CH-HHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 0001122333321 12 4568999999999975433 45678899999999999998887
Q ss_pred cCCCcEEEEeeC
Q psy17528 211 MKGLKSFVHVST 222 (366)
Q Consensus 211 ~~~~~~~v~iSS 222 (366)
...-..++.+|.
T Consensus 103 ~~p~~~vivvsN 114 (299)
T TIGR01771 103 SGFDGIFLVATN 114 (299)
T ss_pred hCCCeEEEEeCC
Confidence 633334455553
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.19 Score=54.73 Aligned_cols=45 Identities=16% Similarity=0.003 Sum_probs=36.2
Q ss_pred cccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCc
Q psy17528 41 PIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGST 88 (366)
Q Consensus 41 ~~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~ 88 (366)
.-++.++..+|+|.|+ | +|+.++..|.+.| .+.++++++...-..
T Consensus 100 ~~Q~~L~~~~V~IvG~-G-lGs~~a~~LaraG-vvG~l~lvD~D~ve~ 144 (722)
T PRK07877 100 EEQERLGRLRIGVVGL-S-VGHAIAHTLAAEG-LCGELRLADFDTLEL 144 (722)
T ss_pred HHHHHHhcCCEEEEEe-c-HHHHHHHHHHHcc-CCCeEEEEcCCEEcc
Confidence 4467778899999999 8 9999999999996 236888888865433
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.093 Score=53.36 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=29.0
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
|+|+|+|+ |.+|.++++.|.+.| ..|+++++++
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g---~~v~vid~~~ 33 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGEN---NDVTVIDTDE 33 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCC---CcEEEEECCH
Confidence 47999997 999999999999988 7888888864
|
|
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.27 Score=46.39 Aligned_cols=39 Identities=33% Similarity=0.407 Sum_probs=31.9
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+.++..+|+|.|. |.+|++.++.|.+.| +.++.+++-..
T Consensus 26 ekl~~~~V~VvGi-GGVGSw~veALaRsG--ig~itlID~D~ 64 (263)
T COG1179 26 EKLKQAHVCVVGI-GGVGSWAVEALARSG--IGRITLIDMDD 64 (263)
T ss_pred HHHhhCcEEEEec-CchhHHHHHHHHHcC--CCeEEEEeccc
Confidence 4566789999995 889999999999996 56777777643
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.14 Score=50.76 Aligned_cols=34 Identities=29% Similarity=0.478 Sum_probs=27.3
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIR 83 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R 83 (366)
+++|+|+||||++|..+++.|.+. +. .++.++.+
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~-p~-~elv~v~~ 35 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNH-PE-VEIVAVTS 35 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcC-CC-ceEEEEEC
Confidence 479999999999999999999877 34 45555555
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.16 Score=49.30 Aligned_cols=114 Identities=18% Similarity=0.107 Sum_probs=70.9
Q ss_pred EEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccccc
Q psy17528 51 IFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNYFN 130 (366)
Q Consensus 51 ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (366)
|.|.|+ |++|+.++..|+..| -+..+++++++.+... ....- +.+.
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~-~~~el~l~D~~~~~~~---g~~~D--------L~~~--------------------- 46 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKG-LASELVLVDVNEEKAK---GDALD--------LSHA--------------------- 46 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcC-CCCEEEEEeCCccHHH---HHHHh--------HHHh---------------------
Confidence 468886 899999999998875 4578999999765321 11110 1000
Q ss_pred hhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh-hhhHHHHHHHHHHHHHHHHHHHH
Q psy17528 131 DAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF-DEHIRTAYNINVKGTQTILALAK 209 (366)
Q Consensus 131 ~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~-~~~~~~~~~~nv~~~~~ll~~a~ 209 (366)
.... ....+... . ++ +.+.++|+||.++|...- .++..+....|+...+.+.+.++
T Consensus 47 ----------~~~~-~~~~i~~~---~--------~~-~~l~~aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~ 103 (300)
T cd00300 47 ----------SAFL-ATGTIVRG---G--------DY-ADAADADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLK 103 (300)
T ss_pred ----------cccc-CCCeEEEC---C--------CH-HHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0000 11222221 1 22 357899999999997543 34566788889999999999888
Q ss_pred hcCCCcEEEEee
Q psy17528 210 RMKGLKSFVHVS 221 (366)
Q Consensus 210 ~~~~~~~~v~iS 221 (366)
+...-..++.+|
T Consensus 104 ~~~p~~~viv~s 115 (300)
T cd00300 104 KYGPDAIILVVS 115 (300)
T ss_pred HhCCCeEEEEcc
Confidence 763223344444
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.23 Score=53.09 Aligned_cols=39 Identities=26% Similarity=0.440 Sum_probs=33.7
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+.++..+|||.|+ |.+|+.+++.|.+.| |.++++++...
T Consensus 334 ekL~~~kVLIvGa-GGLGs~VA~~La~~G--Vg~ItlVD~D~ 372 (664)
T TIGR01381 334 ERYSQLKVLLLGA-GTLGCNVARCLIGWG--VRHITFVDNGK 372 (664)
T ss_pred HHHhcCeEEEECC-cHHHHHHHHHHHHcC--CCeEEEEcCCE
Confidence 5667899999996 889999999999996 68999998854
|
This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. |
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.25 Score=41.58 Aligned_cols=36 Identities=25% Similarity=0.383 Sum_probs=29.5
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
++|.|.|++|-+|+.+++.+.+. +...-+-+++|+.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~-~~~~lv~~v~~~~ 36 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES-PGFELVGAVDRKP 36 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS-TTEEEEEEEETTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-CCcEEEEEEecCC
Confidence 47999999999999999999996 4555566666765
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.14 Score=47.81 Aligned_cols=75 Identities=19% Similarity=0.270 Sum_probs=55.7
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
|+++|.|+ |-+|+.+++.|.+.| +.|+++++++.. ..+..
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g---~~Vv~Id~d~~~------~~~~~------------------------------ 40 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEG---HNVVLIDRDEER------VEEFL------------------------------ 40 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCC---CceEEEEcCHHH------HHHHh------------------------------
Confidence 57888885 999999999999999 899999998542 11100
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHH-HhCcCEEEEcCcc
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELL-ISQTTIIFHIAAT 183 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~-~~~~d~Vih~a~~ 183 (366)
........+.+|.++++ .+.++ +.++|+++-..+.
T Consensus 41 --------------~~~~~~~~v~gd~t~~~------~L~~agi~~aD~vva~t~~ 76 (225)
T COG0569 41 --------------ADELDTHVVIGDATDED------VLEEAGIDDADAVVAATGN 76 (225)
T ss_pred --------------hhhcceEEEEecCCCHH------HHHhcCCCcCCEEEEeeCC
Confidence 01135678899999987 67776 5789999976553
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.24 Score=49.16 Aligned_cols=38 Identities=26% Similarity=0.304 Sum_probs=30.3
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcC
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRT 84 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~ 84 (366)
+..+|.|.||||++|..+++-|.++.+.+.++..+...
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~ 40 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASE 40 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEcc
Confidence 45789999999999999999998854455677666554
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.45 Score=45.22 Aligned_cols=36 Identities=19% Similarity=0.340 Sum_probs=27.2
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
++|.|+|++|.+|+.+++.+.+. +.+.-+.++++..
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~-~~~elvav~d~~~ 37 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAA-EDLELVAAVDRPG 37 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecCC
Confidence 68999999999999999888765 3444454555553
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.3 Score=47.22 Aligned_cols=35 Identities=14% Similarity=0.269 Sum_probs=30.5
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIR 83 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R 83 (366)
+++++|+|.|++|.+|..++..|++.| ..|++..|
T Consensus 157 l~Gk~vvViG~gg~vGkpia~~L~~~g---atVtv~~~ 191 (283)
T PRK14192 157 LAGKHAVVVGRSAILGKPMAMMLLNAN---ATVTICHS 191 (283)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCC---CEEEEEeC
Confidence 468999999999999999999999987 57777665
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.49 Score=45.85 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=31.3
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
.++++++|.|| |..+++++..|...| +.+|+++.|+..
T Consensus 122 ~~~k~vlvlGa-GGaarAi~~~l~~~g--~~~i~i~nRt~~ 159 (288)
T PRK12749 122 IKGKTMVLLGA-GGASTAIGAQGAIEG--LKEIKLFNRRDE 159 (288)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCC--CCEEEEEeCCcc
Confidence 35789999997 556999999998875 579999999854
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.91 Score=43.96 Aligned_cols=52 Identities=13% Similarity=0.050 Sum_probs=35.7
Q ss_pred HHhCcCEEEEcCcccCh-hhhHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEee
Q psy17528 170 LISQTTIIFHIAATVRF-DEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVS 221 (366)
Q Consensus 170 ~~~~~d~Vih~a~~~~~-~~~~~~~~~~nv~~~~~ll~~a~~~~~~~~~v~iS 221 (366)
.++++|+||.+++...- .....+....|+...+.+++.+.+...-..++.+|
T Consensus 63 ~l~dADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~s 115 (300)
T cd01339 63 DIAGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVT 115 (300)
T ss_pred HhCCCCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 36899999999987542 23444566778888888888887763333344444
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=93.02 E-value=1.9 Score=42.42 Aligned_cols=33 Identities=21% Similarity=0.372 Sum_probs=28.5
Q ss_pred eEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 50 ~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+|||.|+ |.+|.++++.|...| +.++++++...
T Consensus 1 kVlIVGa-GGlG~EiaKnLal~G--vg~ItIvD~D~ 33 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLTG--FGEIHIIDLDT 33 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHhc--CCeEEEEcCCC
Confidence 5899996 889999999999986 58898888854
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.45 Score=49.32 Aligned_cols=37 Identities=14% Similarity=0.189 Sum_probs=31.6
Q ss_pred cCCCCeEEEeCC----------------cchHHHHHHHHHHHhCCCccEEEEEEcC
Q psy17528 45 FYKDQTIFITGA----------------TGFLGSLLVEKLLRCCPQIRKIILLIRT 84 (366)
Q Consensus 45 ~~~~~~ilItGa----------------tG~IG~~lv~~Ll~~g~~~~~V~~~~R~ 84 (366)
.+++++||||+| +|-.|.+|++.+...| ..|+++.-.
T Consensus 253 ~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~G---A~VtlI~Gp 305 (475)
T PRK13982 253 PLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAG---AEVTLISGP 305 (475)
T ss_pred ccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCC---CcEEEEeCC
Confidence 378999999975 6889999999999999 888887643
|
|
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.72 Score=49.96 Aligned_cols=42 Identities=19% Similarity=0.229 Sum_probs=34.9
Q ss_pred cccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 41 PIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 41 ~~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
..++.++..+|+|.| .|.+|+.++..|.+.| |.++++++...
T Consensus 36 e~Q~kL~~~~VlIvG-~GGlGs~va~~Lar~G--VG~l~LvD~D~ 77 (679)
T PRK14851 36 GEQERLAEAKVAIPG-MGGVGGVHLITMVRTG--IGRFHIADFDQ 77 (679)
T ss_pred HHHHHHhcCeEEEEC-cCHHHHHHHHHHHHhC--CCeEEEEcCCE
Confidence 446778899999999 5889999999999997 57888887753
|
|
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.76 Score=51.44 Aligned_cols=41 Identities=22% Similarity=0.139 Sum_probs=34.6
Q ss_pred ccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 42 IQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 42 ~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
-|+.++..+|+|.| .|.+|+.++..|...| |.++.+++-..
T Consensus 326 ~Q~kL~~srVlVvG-lGGlGs~ia~~LAraG--VG~I~L~D~D~ 366 (989)
T PRK14852 326 GQRRLLRSRVAIAG-LGGVGGIHLMTLARTG--IGNFNLADFDA 366 (989)
T ss_pred HHHHHhcCcEEEEC-CcHHHHHHHHHHHHcC--CCeEEEEcCCE
Confidence 36788899999999 5889999999999997 57888887754
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.18 Score=50.12 Aligned_cols=36 Identities=28% Similarity=0.383 Sum_probs=28.9
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+.+|+|+||||++|+++++.|++. +. .++..+.++.
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~-p~-~el~~~~~s~ 38 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANH-PW-FEVTALAASE 38 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcC-CC-ceEEEEEcCh
Confidence 579999999999999999999876 33 4666665554
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.37 E-value=0.35 Score=41.65 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=29.6
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
+++++++.| +| .|.+++..|.+.| ..|++++.++.
T Consensus 16 ~~~kileIG-~G-fG~~vA~~L~~~G---~~ViaIDi~~~ 50 (134)
T PRK04148 16 KNKKIVELG-IG-FYFKVAKKLKESG---FDVIVIDINEK 50 (134)
T ss_pred cCCEEEEEE-ec-CCHHHHHHHHHCC---CEEEEEECCHH
Confidence 357899998 56 6899999999998 89999999864
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.25 Score=48.89 Aligned_cols=35 Identities=29% Similarity=0.455 Sum_probs=29.0
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRT 84 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~ 84 (366)
+.+|.|.||+||.|..|++.|..+ +.+. +.+.+.+
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~H-p~ve-~~~~ss~ 36 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGH-PDVE-LILISSR 36 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcC-CCeE-EEEeech
Confidence 579999999999999999999999 7777 4444443
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.24 E-value=1 Score=45.28 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=30.6
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRT 84 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~ 84 (366)
.++|.|.||+|.+|..+++.|.+.| +.|++.+|+
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G---~~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSG---YQVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCC---CeEEEeCCC
Confidence 4789999999999999999999998 778888875
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.22 Score=45.94 Aligned_cols=35 Identities=31% Similarity=0.314 Sum_probs=31.0
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
|+|.|+||+|.+|+.++..|.+.| ++|.+.+|+++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G---~~V~v~~r~~~ 35 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG---NKIIIGSRDLE 35 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC---CEEEEEEcCHH
Confidence 479999999999999999999998 78888888753
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.82 Score=41.90 Aligned_cols=40 Identities=18% Similarity=0.304 Sum_probs=33.0
Q ss_pred cccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcC
Q psy17528 41 PIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRT 84 (366)
Q Consensus 41 ~~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~ 84 (366)
|+.=.+++++|+|.|| |-+|...++.|++.| .+|+++.+.
T Consensus 3 Pl~l~l~~k~vLVIGg-G~va~~ka~~Ll~~g---a~V~VIs~~ 42 (202)
T PRK06718 3 PLMIDLSNKRVVIVGG-GKVAGRRAITLLKYG---AHIVVISPE 42 (202)
T ss_pred ceEEEcCCCEEEEECC-CHHHHHHHHHHHHCC---CeEEEEcCC
Confidence 3434467999999996 999999999999998 788888653
|
|
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=92.01 E-value=3 Score=39.21 Aligned_cols=33 Identities=18% Similarity=0.315 Sum_probs=28.1
Q ss_pred eEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 50 ~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+|+|.| .|.+|+++++.|...| +.++++++...
T Consensus 1 kVlvvG-~GGlG~eilk~La~~G--vg~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVG-AGGIGCELLKNLALMG--FGQIHVIDMDT 33 (234)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcC--CCeEEEEeCCE
Confidence 589998 5889999999999986 57888888864
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.88 E-value=0.64 Score=45.08 Aligned_cols=36 Identities=14% Similarity=0.235 Sum_probs=31.0
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIR 83 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R 83 (366)
.+++++|+|+|.++.+|.-++..|++.| .+|++..+
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~g---atVtv~~s 190 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKN---ASVTILHS 190 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCC---CeEEEEeC
Confidence 3578999999999999999999999987 67776655
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=91.85 E-value=3.4 Score=40.06 Aligned_cols=41 Identities=17% Similarity=0.300 Sum_probs=34.1
Q ss_pred ccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 42 IQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 42 ~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.++.++..+|||.|+ |.+|.++++.|...| +.+|++++...
T Consensus 13 aq~kL~~s~VLIvG~-gGLG~EiaKnLalaG--Vg~itI~D~d~ 53 (286)
T cd01491 13 AMKKLQKSNVLISGL-GGLGVEIAKNLILAG--VKSVTLHDTKP 53 (286)
T ss_pred HHHHHhcCcEEEEcC-CHHHHHHHHHHHHcC--CCeEEEEcCCc
Confidence 346667889999996 779999999999996 68898888764
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.64 Score=44.65 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=30.7
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
.++|.|.|+ |.+|..++..|.+.| ..|+++++++.
T Consensus 3 ~~kIaViGa-G~mG~~iA~~la~~G---~~V~l~d~~~~ 37 (287)
T PRK08293 3 IKNVTVAGA-GVLGSQIAFQTAFHG---FDVTIYDISDE 37 (287)
T ss_pred ccEEEEECC-CHHHHHHHHHHHhcC---CeEEEEeCCHH
Confidence 368999985 999999999999998 78999999754
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=91.57 E-value=0.46 Score=42.42 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=32.9
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
..+.+++|.|.| .|-||+.+++.|..-| .+|+..+|+..
T Consensus 32 ~~l~g~tvgIiG-~G~IG~~vA~~l~~fG---~~V~~~d~~~~ 70 (178)
T PF02826_consen 32 RELRGKTVGIIG-YGRIGRAVARRLKAFG---MRVIGYDRSPK 70 (178)
T ss_dssp S-STTSEEEEES-TSHHHHHHHHHHHHTT----EEEEEESSCH
T ss_pred cccCCCEEEEEE-EcCCcCeEeeeeecCC---ceeEEecccCC
Confidence 345689999998 6999999999999888 79999999864
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.42 E-value=0.61 Score=46.47 Aligned_cols=37 Identities=27% Similarity=0.361 Sum_probs=27.5
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHh-CCCccEEEEEEcC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRC-CPQIRKIILLIRT 84 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~-g~~~~~V~~~~R~ 84 (366)
+.+|.|.||||++|+.+++-|.++ ...+.++..+...
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~ 42 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSK 42 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECc
Confidence 468999999999999999998854 3444455555543
|
|
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.26 E-value=0.8 Score=46.21 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=35.6
Q ss_pred cccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 41 PIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 41 ~~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.+++.+++++|+|.|+ |.+|++++..|.+.| +.++++++...
T Consensus 169 ~~q~kL~~~~VaIVG~-GG~GS~Va~~LAR~G--VgeI~LVD~D~ 210 (393)
T PRK06153 169 ALSAKLEGQRIAIIGL-GGTGSYILDLVAKTP--VREIHLFDGDD 210 (393)
T ss_pred HHHHHHhhCcEEEEcC-CccHHHHHHHHHHcC--CCEEEEECCCE
Confidence 3467888999999995 889999999999996 68899888754
|
|
| >KOG1496|consensus | Back alignment and domain information |
|---|
Probab=91.18 E-value=2.5 Score=40.16 Aligned_cols=108 Identities=19% Similarity=0.213 Sum_probs=58.3
Q ss_pred HHHHHhCcCEEEEcCcccChh-hhHHHHHHHHHHHHHHHHHHHHhc--CCCcEEEEeeCcceecCccccccccCCCCCCh
Q psy17528 167 EELLISQTTIIFHIAATVRFD-EHIRTAYNINVKGTQTILALAKRM--KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTA 243 (366)
Q Consensus 167 ~~~~~~~~d~Vih~a~~~~~~-~~~~~~~~~nv~~~~~ll~~a~~~--~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~ 243 (366)
....+.++|+.|--.+...-+ ....++...|+...+.--.++.+. .++|-+|.---+.... .+..++.|.
T Consensus 74 ~~~afkdv~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNa---li~~k~Aps---- 146 (332)
T KOG1496|consen 74 EVEAFKDVDVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNA---LILKKFAPS---- 146 (332)
T ss_pred hhhhhccCcEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccch---hHHhhhCCC----
Confidence 356778899999888865433 345678888887655544444432 2444443322221110 111111110
Q ss_pred HHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHHhc--CCCCEEEEecCccccC
Q psy17528 244 EELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVG--HELPICVLRPSIVFPT 304 (366)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~--~gl~~~ilRp~~v~G~ 304 (366)
-+.-|....+++...+.+.+.. -|+++.-+.--+|+|-
T Consensus 147 -----------------------IP~kNfs~lTRLDhNRA~~QlA~klgv~~~~VkNviIWGN 186 (332)
T KOG1496|consen 147 -----------------------IPEKNFSALTRLDHNRALAQLALKLGVPVSDVKNVIIWGN 186 (332)
T ss_pred -----------------------CchhcchhhhhhchhhHHHHHHHhhCCchhhcceeEEecc
Confidence 0112667777887777777666 5666655555555663
|
|
| >cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1 | Back alignment and domain information |
|---|
Probab=91.13 E-value=2.4 Score=43.49 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=32.3
Q ss_pred cccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 43 QEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 43 ~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+..+...+|+|.|++| +|+.+++.|...| +.++++++...
T Consensus 15 Q~~L~~s~VlliG~gg-lGsEilKNLvL~G--Ig~~tIvD~~~ 54 (425)
T cd01493 15 QAALESAHVCLLNATA-TGTEILKNLVLPG--IGSFTIVDGSK 54 (425)
T ss_pred HHHHhhCeEEEEcCcH-HHHHHHHHHHHcC--CCeEEEECCCc
Confidence 3455678999999755 9999999999986 67888888754
|
APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.02 E-value=1.3 Score=43.74 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=31.1
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
-++|.|.|+ |-+|+.++..++..| ..|++.++++.
T Consensus 7 i~~VaVIGa-G~MG~giA~~~a~aG---~~V~l~D~~~~ 41 (321)
T PRK07066 7 IKTFAAIGS-GVIGSGWVARALAHG---LDVVAWDPAPG 41 (321)
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCC---CeEEEEeCCHH
Confidence 368999985 999999999999999 89999999764
|
|
| >PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms [] | Back alignment and domain information |
|---|
Probab=90.98 E-value=0.88 Score=38.93 Aligned_cols=35 Identities=23% Similarity=0.395 Sum_probs=28.9
Q ss_pred EEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 51 IFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 51 ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
|.|.|+||.||...+.-+.+. +...+|++++-..+
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~-~d~f~v~~Lsa~~n 35 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKH-PDKFEVVALSAGSN 35 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHC-TTTEEEEEEEESST
T ss_pred CEEEcCCcHHHHHHHHHHHhC-CCceEEEEEEcCCC
Confidence 689999999999988888877 56678888887544
|
In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A .... |
| >PRK08057 cobalt-precorrin-6x reductase; Reviewed | Back alignment and domain information |
|---|
Probab=90.90 E-value=3.5 Score=39.15 Aligned_cols=72 Identities=13% Similarity=0.118 Sum_probs=51.8
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+++|||.|||+= |..+++.|.+.| +.|++.+.++...
T Consensus 2 ~~~IlvlgGT~e-gr~la~~L~~~g---~~v~~Svat~~g~--------------------------------------- 38 (248)
T PRK08057 2 MPRILLLGGTSE-ARALARALAAAG---VDIVLSLAGRTGG--------------------------------------- 38 (248)
T ss_pred CceEEEEechHH-HHHHHHHHHhCC---CeEEEEEccCCCC---------------------------------------
Confidence 578999999986 999999999887 6666655543211
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcc
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAAT 183 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~ 183 (366)
.....+.++.|-+.+.+ .+..++. ++++||+..-.
T Consensus 39 ---------------~~~~~~~v~~G~l~~~~------~l~~~l~~~~i~~VIDATHP 75 (248)
T PRK08057 39 ---------------PADLPGPVRVGGFGGAE------GLAAYLREEGIDLVIDATHP 75 (248)
T ss_pred ---------------cccCCceEEECCCCCHH------HHHHHHHHCCCCEEEECCCc
Confidence 01245677788885555 7888886 79999987543
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=90.81 E-value=0.24 Score=48.00 Aligned_cols=37 Identities=11% Similarity=0.212 Sum_probs=32.3
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.+++++++|+|. |.+|..+++.|...| .+|++.+|+.
T Consensus 148 ~l~gk~v~IiG~-G~iG~avA~~L~~~G---~~V~v~~R~~ 184 (287)
T TIGR02853 148 TIHGSNVMVLGF-GRTGMTIARTFSALG---ARVFVGARSS 184 (287)
T ss_pred CCCCCEEEEEcC-hHHHHHHHHHHHHCC---CEEEEEeCCH
Confidence 346899999996 889999999999988 6899999974
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=90.80 E-value=2.2 Score=34.63 Aligned_cols=31 Identities=23% Similarity=0.388 Sum_probs=26.1
Q ss_pred EEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 51 IFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 51 ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
|+|.|. |-+|..+++.|.+.+ ++|+++++++
T Consensus 1 vvI~G~-g~~~~~i~~~L~~~~---~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGY-GRIGREIAEQLKEGG---IDVVVIDRDP 31 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTT---SEEEEEESSH
T ss_pred eEEEcC-CHHHHHHHHHHHhCC---CEEEEEECCc
Confidence 678885 789999999999975 6899999974
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=90.78 E-value=0.17 Score=45.54 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=28.8
Q ss_pred eEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCC
Q psy17528 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGS 87 (366)
Q Consensus 50 ~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~ 87 (366)
+|.|.|| |.+|..++..++..| ..|.++++++..
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G---~~V~l~d~~~~~ 34 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAG---YEVTLYDRSPEA 34 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTT---SEEEEE-SSHHH
T ss_pred CEEEEcC-CHHHHHHHHHHHhCC---CcEEEEECChHH
Confidence 6899996 999999999999999 899999997643
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.68 E-value=1.3 Score=42.58 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=30.2
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
++|.|.|+ |.+|..++..|.+.| +.|+++++++.
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G---~~V~~~d~~~~ 35 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSG---FQTTLVDIKQE 35 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCC---CcEEEEeCCHH
Confidence 57999996 999999999999998 78999999754
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=90.64 E-value=0.74 Score=46.74 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=30.6
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.+++|+|.|+ |.+|..+++.|.+.| ..|+++++++
T Consensus 230 ~~~~iiIiG~-G~~g~~l~~~L~~~~---~~v~vid~~~ 264 (453)
T PRK09496 230 PVKRVMIVGG-GNIGYYLAKLLEKEG---YSVKLIERDP 264 (453)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCC---CeEEEEECCH
Confidence 3688999997 999999999999987 7888888874
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.52 E-value=0.6 Score=46.09 Aligned_cols=38 Identities=29% Similarity=0.443 Sum_probs=29.9
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+++|.|.||||.+|+.+++.|.++.+.+..+.++....
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~r 38 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASAR 38 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEeccc
Confidence 36899999999999999999999656666555555443
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.51 E-value=0.88 Score=46.44 Aligned_cols=37 Identities=30% Similarity=0.450 Sum_probs=32.0
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+++++|+|.|+ |-.|..++.+|...| +..|++..|+.
T Consensus 179 l~~kkvlviGa-G~~a~~va~~L~~~g--~~~I~V~nRt~ 215 (414)
T PRK13940 179 ISSKNVLIIGA-GQTGELLFRHVTALA--PKQIMLANRTI 215 (414)
T ss_pred ccCCEEEEEcC-cHHHHHHHHHHHHcC--CCEEEEECCCH
Confidence 56799999996 889999999999886 46899999974
|
|
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=90.48 E-value=2.4 Score=42.57 Aligned_cols=36 Identities=14% Similarity=0.306 Sum_probs=28.2
Q ss_pred CeEEEeCCcchHHHHHHHHHH-HhCCCccEEEEEEcC
Q psy17528 49 QTIFITGATGFLGSLLVEKLL-RCCPQIRKIILLIRT 84 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll-~~g~~~~~V~~~~R~ 84 (366)
++|.|.||||.+|+.+++.|. +....+..+.++...
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~ 37 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTS 37 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEch
Confidence 479999999999999999998 555555566666554
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=90.42 E-value=1 Score=43.40 Aligned_cols=38 Identities=18% Similarity=0.144 Sum_probs=32.2
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
.++++++|.|+ |..|++++..|.+.| +.+|+++.|+.+
T Consensus 123 ~~~k~vlvlGa-GGaarai~~aL~~~G--~~~i~I~nRt~~ 160 (282)
T TIGR01809 123 LAGFRGLVIGA-GGTSRAAVYALASLG--VTDITVINRNPD 160 (282)
T ss_pred cCCceEEEEcC-cHHHHHHHHHHHHcC--CCeEEEEeCCHH
Confidence 45789999986 888999999999886 578999999753
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=90.29 E-value=2 Score=35.50 Aligned_cols=33 Identities=30% Similarity=0.556 Sum_probs=25.1
Q ss_pred eEEEeCCcchHHHHHHHHHHHhCCCccEEEEE-EcC
Q psy17528 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILL-IRT 84 (366)
Q Consensus 50 ~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~-~R~ 84 (366)
+|.|+|++|.+|..++..|.+. +. ..+..+ .|.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~-~~-~~l~av~~~~ 34 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH-PD-FEVVALAASA 34 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcC-CC-ceEEEEEech
Confidence 5889999999999999999886 33 345555 443
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=90.26 E-value=0.72 Score=35.27 Aligned_cols=34 Identities=26% Similarity=0.504 Sum_probs=30.0
Q ss_pred eEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCC
Q psy17528 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGS 87 (366)
Q Consensus 50 ~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~ 87 (366)
+|+|.|| |++|..++..|.+.| .+|+++.|++..
T Consensus 1 ~vvViGg-G~ig~E~A~~l~~~g---~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGG-GFIGIELAEALAELG---KEVTLIERSDRL 34 (80)
T ss_dssp EEEEESS-SHHHHHHHHHHHHTT---SEEEEEESSSSS
T ss_pred CEEEECc-CHHHHHHHHHHHHhC---cEEEEEeccchh
Confidence 5788885 999999999999998 899999998754
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.22 E-value=1 Score=43.50 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=31.5
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCC
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGS 87 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~ 87 (366)
++|.|.|+ |.+|..++..|+..| +.|+++++++..
T Consensus 6 ~~V~ViGa-G~mG~~iA~~~a~~G---~~V~l~d~~~~~ 40 (286)
T PRK07819 6 QRVGVVGA-GQMGAGIAEVCARAG---VDVLVFETTEEL 40 (286)
T ss_pred cEEEEEcc-cHHHHHHHHHHHhCC---CEEEEEECCHHH
Confidence 58999986 999999999999999 899999998654
|
|
| >KOG2013|consensus | Back alignment and domain information |
|---|
Probab=90.18 E-value=0.25 Score=50.65 Aligned_cols=38 Identities=26% Similarity=0.345 Sum_probs=30.4
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcC
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRT 84 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~ 84 (366)
+..++.+|||.|| |.||..|.+.|+..| +..|++++-.
T Consensus 8 eai~~~riLvVGa-GGIGCELLKnLal~g--f~~IhiIDlD 45 (603)
T KOG2013|consen 8 EAIKSGRILVVGA-GGIGCELLKNLALTG--FEEIHIIDLD 45 (603)
T ss_pred HHhccCeEEEEec-CcccHHHHHHHHHhc--CCeeEEEecc
Confidence 3346789999996 789999999999987 4677777664
|
|
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=90.02 E-value=0.91 Score=44.37 Aligned_cols=33 Identities=27% Similarity=0.444 Sum_probs=28.2
Q ss_pred eEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 50 ~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+|+|.|+ |.+|+.+++.|...| |.++++++...
T Consensus 1 kVLIvGa-GGLGs~vA~~La~aG--Vg~ItlvD~D~ 33 (307)
T cd01486 1 KCLLLGA-GTLGCNVARNLLGWG--VRHITFVDSGK 33 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHHcC--CCeEEEECCCE
Confidence 5899985 889999999999986 68899888754
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.02 E-value=0.89 Score=44.40 Aligned_cols=36 Identities=11% Similarity=0.272 Sum_probs=31.8
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRT 84 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~ 84 (366)
+++|+|.|.|.+|.+|.-++..|++.| ..|++..|.
T Consensus 157 l~Gk~V~vIG~s~ivG~PmA~~L~~~g---atVtv~~~~ 192 (301)
T PRK14194 157 LTGKHAVVIGRSNIVGKPMAALLLQAH---CSVTVVHSR 192 (301)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCC---CEEEEECCC
Confidence 568999999999999999999999998 788777554
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=90.01 E-value=0.78 Score=46.07 Aligned_cols=36 Identities=14% Similarity=0.342 Sum_probs=26.2
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhC-CCccEEEEEEcC
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCC-PQIRKIILLIRT 84 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g-~~~~~V~~~~R~ 84 (366)
++|.|.||||++|+.+++.|+++- ..+.++..+..+
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~ 38 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTS 38 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecch
Confidence 689999999999999999777762 223345554443
|
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=89.95 E-value=3.7 Score=42.13 Aligned_cols=41 Identities=17% Similarity=0.339 Sum_probs=33.6
Q ss_pred ccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 42 IQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 42 ~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
+.++..+++|+|.|. |-.|..+++.|.+.| ..|.+.++++.
T Consensus 8 ~~~~~~~~~i~v~G~-G~sG~a~a~~L~~~G---~~V~~~D~~~~ 48 (458)
T PRK01710 8 FKKFIKNKKVAVVGI-GVSNIPLIKFLVKLG---AKVTAFDKKSE 48 (458)
T ss_pred HhhhhcCCeEEEEcc-cHHHHHHHHHHHHCC---CEEEEECCCCC
Confidence 345566789999995 889999999999998 78999888653
|
|
| >PF08732 HIM1: HIM1; InterPro: IPR014843 HIM1 (high induction of mutagenesis protein 1) plays a role in the control of spontaneous and induced mutagenesis [] | Back alignment and domain information |
|---|
Probab=89.76 E-value=0.76 Score=46.23 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=31.4
Q ss_pred chHHHHHHHHHHHHHHhcCC--CCEEEEecCccccCCCC
Q psy17528 271 NSYTLTKATAEDLVRQVGHE--LPICVLRPSIVFPTLQE 307 (366)
Q Consensus 271 ~~Y~~sK~~~E~~l~~~~~g--l~~~ilRp~~v~G~~~~ 307 (366)
.+|..+|...|+-+....++ -..+|||||.+.|....
T Consensus 267 f~Yfk~K~~LE~dl~~~l~~~l~~lvILRPGplvG~h~~ 305 (410)
T PF08732_consen 267 FPYFKTKGELENDLQNLLPPKLKHLVILRPGPLVGEHGS 305 (410)
T ss_pred hhhhHHHHHHHHHHHhhcccccceEEEecCccccCCCCC
Confidence 68999999999999887622 35799999999998776
|
It is thought to participate in the control of processing of mutational intermediates appearing during error-prone bypass of DNA damage. |
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=89.74 E-value=1.1 Score=44.78 Aligned_cols=35 Identities=31% Similarity=0.291 Sum_probs=30.5
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
+++|+|.|+ |.+|.-++..+.+.| .+|++++.++.
T Consensus 2 ~~~igilG~-Gql~~ml~~aa~~lG---~~v~~~d~~~~ 36 (372)
T PRK06019 2 MKTIGIIGG-GQLGRMLALAAAPLG---YKVIVLDPDPD 36 (372)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcC---CEEEEEeCCCC
Confidence 578999997 899999999999998 88889887654
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.32 E-value=1.1 Score=43.33 Aligned_cols=37 Identities=24% Similarity=0.333 Sum_probs=32.3
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
++++++|.|| |..+.+++..|++.| +.+|+++.|+.+
T Consensus 125 ~~~~vlilGA-GGAarAv~~aL~~~g--~~~i~V~NRt~~ 161 (283)
T COG0169 125 TGKRVLILGA-GGAARAVAFALAEAG--AKRITVVNRTRE 161 (283)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHcC--CCEEEEEeCCHH
Confidence 5789999996 778999999999996 478999999864
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=89.28 E-value=2.4 Score=38.93 Aligned_cols=35 Identities=11% Similarity=0.284 Sum_probs=30.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRT 84 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~ 84 (366)
+++++|+|.|| |-+|..-++.|++.| .+|++++..
T Consensus 7 l~gk~vlVvGg-G~va~rk~~~Ll~~g---a~VtVvsp~ 41 (205)
T TIGR01470 7 LEGRAVLVVGG-GDVALRKARLLLKAG---AQLRVIAEE 41 (205)
T ss_pred cCCCeEEEECc-CHHHHHHHHHHHHCC---CEEEEEcCC
Confidence 56899999995 999999999999998 788887654
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.24 E-value=1.8 Score=42.66 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=32.0
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+.+||+.|.| .|-||+.+++.|..-| -+|++.++..
T Consensus 140 l~gkTvGIiG-~G~IG~~va~~l~afg---m~v~~~d~~~ 175 (324)
T COG0111 140 LAGKTVGIIG-LGRIGRAVAKRLKAFG---MKVIGYDPYS 175 (324)
T ss_pred ccCCEEEEEC-CCHHHHHHHHHHHhCC---CeEEEECCCC
Confidence 4589999998 6999999999999998 8999999943
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=89.20 E-value=1.6 Score=38.71 Aligned_cols=35 Identities=14% Similarity=0.275 Sum_probs=27.1
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIR 83 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R 83 (366)
+++|+|+|.|.++.+|.-++..|+++| ..|+....
T Consensus 34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~---atVt~~h~ 68 (160)
T PF02882_consen 34 LEGKKVVVVGRSNIVGKPLAMLLLNKG---ATVTICHS 68 (160)
T ss_dssp TTT-EEEEE-TTTTTHHHHHHHHHHTT----EEEEE-T
T ss_pred CCCCEEEEECCcCCCChHHHHHHHhCC---CeEEeccC
Confidence 679999999999999999999999997 66665443
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=89.17 E-value=0.42 Score=46.47 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=31.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
..+++|+|+|. |.+|..++..|.+.| .+|++.+|+.
T Consensus 150 l~g~kvlViG~-G~iG~~~a~~L~~~G---a~V~v~~r~~ 185 (296)
T PRK08306 150 IHGSNVLVLGF-GRTGMTLARTLKALG---ANVTVGARKS 185 (296)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCC---CEEEEEECCH
Confidence 35799999996 889999999999988 6899999974
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=88.74 E-value=1.1 Score=45.18 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=30.3
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
|+|-|.| +||+|.....-|.+.| +.|+|++..++
T Consensus 1 MkI~viG-tGYVGLv~g~~lA~~G---HeVv~vDid~~ 34 (414)
T COG1004 1 MKITVIG-TGYVGLVTGACLAELG---HEVVCVDIDES 34 (414)
T ss_pred CceEEEC-CchHHHHHHHHHHHcC---CeEEEEeCCHH
Confidence 5789998 7999999999999999 99999999754
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.57 E-value=1.2 Score=42.54 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=30.4
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
.++|.|.|+ |.+|..++..|++.| ..|+++++++.
T Consensus 3 ~~kI~VIG~-G~mG~~ia~~la~~g---~~V~~~d~~~~ 37 (282)
T PRK05808 3 IQKIGVIGA-GTMGNGIAQVCAVAG---YDVVMVDISDA 37 (282)
T ss_pred ccEEEEEcc-CHHHHHHHHHHHHCC---CceEEEeCCHH
Confidence 468999985 999999999999998 68889988754
|
|
| >PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=88.36 E-value=4.7 Score=38.31 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=21.2
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhC
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCC 72 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g 72 (366)
|+|||.|||+= |..+++.|.+.|
T Consensus 1 m~ILvlgGTtE-~r~la~~L~~~g 23 (249)
T PF02571_consen 1 MKILVLGGTTE-GRKLAERLAEAG 23 (249)
T ss_pred CEEEEEechHH-HHHHHHHHHhcC
Confidence 68999999986 999999999997
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=88.31 E-value=0.89 Score=41.57 Aligned_cols=36 Identities=28% Similarity=0.330 Sum_probs=31.6
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcC
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRT 84 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~ 84 (366)
.+++++|+|+|. |-+|+++++.|.+.| .+|++.+++
T Consensus 25 ~l~gk~v~I~G~-G~vG~~~A~~L~~~G---~~Vvv~D~~ 60 (200)
T cd01075 25 SLEGKTVAVQGL-GKVGYKLAEHLLEEG---AKLIVADIN 60 (200)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCC---CEEEEEcCC
Confidence 467899999996 789999999999998 788887776
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=88.22 E-value=2.3 Score=42.00 Aligned_cols=37 Identities=27% Similarity=0.277 Sum_probs=32.1
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
-+.+++|.|.| .|-||+.+++.|...| .+|++.+|+.
T Consensus 147 ~L~gktvgIiG-~G~IG~~vA~~l~~~G---~~V~~~d~~~ 183 (333)
T PRK13243 147 DVYGKTIGIIG-FGRIGQAVARRAKGFG---MRILYYSRTR 183 (333)
T ss_pred CCCCCEEEEEC-cCHHHHHHHHHHHHCC---CEEEEECCCC
Confidence 35789999999 5999999999999887 6888888864
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=88.22 E-value=3 Score=40.23 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=31.9
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
.++++|+|.|+ |..|++++..|.+.| +.+|++++|+..
T Consensus 125 ~~~k~vlIlGa-GGaaraia~aL~~~G--~~~I~I~nR~~~ 162 (284)
T PRK12549 125 ASLERVVQLGA-GGAGAAVAHALLTLG--VERLTIFDVDPA 162 (284)
T ss_pred ccCCEEEEECC-cHHHHHHHHHHHHcC--CCEEEEECCCHH
Confidence 35689999996 779999999999886 578999999753
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=88.19 E-value=1.4 Score=42.91 Aligned_cols=33 Identities=12% Similarity=0.296 Sum_probs=30.0
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEE
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILL 81 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~ 81 (366)
+++++|.|.|-+|.+|..++..|++.| ..|++.
T Consensus 156 ~~Gk~V~viGrs~~mG~PmA~~L~~~g---~tVtv~ 188 (296)
T PRK14188 156 LSGLNAVVIGRSNLVGKPMAQLLLAAN---ATVTIA 188 (296)
T ss_pred CCCCEEEEEcCCcchHHHHHHHHHhCC---CEEEEE
Confidence 579999999999999999999999998 777776
|
|
| >cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3 | Back alignment and domain information |
|---|
Probab=88.01 E-value=12 Score=36.35 Aligned_cols=33 Identities=30% Similarity=0.411 Sum_probs=27.5
Q ss_pred eEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 50 ~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+|||.|+ |.+|.++++.|...| +.++++++...
T Consensus 1 kVlVVGa-GGlG~eilknLal~G--vg~I~IvD~D~ 33 (291)
T cd01488 1 KILVIGA-GGLGCELLKNLALSG--FRNIHVIDMDT 33 (291)
T ss_pred CEEEECC-CHHHHHHHHHHHHcC--CCeEEEECCCE
Confidence 5899985 889999999999986 57888887753
|
UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=88.00 E-value=2.1 Score=37.04 Aligned_cols=36 Identities=17% Similarity=0.203 Sum_probs=30.8
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIR 83 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R 83 (366)
.+++++|.|.|.+.-+|.-++..|.+.| ..|++..+
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~g---atV~~~~~ 60 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDG---ATVYSCDW 60 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEeCC
Confidence 3568999999999999999999999987 67766654
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=87.88 E-value=0.82 Score=44.98 Aligned_cols=34 Identities=18% Similarity=0.368 Sum_probs=27.9
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRT 84 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~ 84 (366)
+.+|||+||+|.+|+..++-+...| .++++.+.+
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G---~~~v~~~~s 176 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALG---ATVVAVVSS 176 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcC---CcEEEEecC
Confidence 8999999999999999998888887 355555554
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=87.84 E-value=11 Score=38.64 Aligned_cols=36 Identities=14% Similarity=0.300 Sum_probs=30.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+++++|+|.|+ |.+|..+++.|.+.| .+|+++++.+
T Consensus 14 ~~~~~v~viG~-G~~G~~~A~~L~~~G---~~V~~~d~~~ 49 (480)
T PRK01438 14 WQGLRVVVAGL-GVSGFAAADALLELG---ARVTVVDDGD 49 (480)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCC---CEEEEEeCCc
Confidence 45789999996 889999999999998 7888888654
|
|
| >KOG1198|consensus | Back alignment and domain information |
|---|
Probab=87.84 E-value=1.5 Score=43.69 Aligned_cols=40 Identities=10% Similarity=0.247 Sum_probs=29.4
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
...+++.|||.||+|.+|++.++-+...| . ..++.+++.+
T Consensus 154 ~~~~g~~vLv~ggsggVG~~aiQlAk~~~--~-~~v~t~~s~e 193 (347)
T KOG1198|consen 154 KLSKGKSVLVLGGSGGVGTAAIQLAKHAG--A-IKVVTACSKE 193 (347)
T ss_pred ccCCCCeEEEEeCCcHHHHHHHHHHHhcC--C-cEEEEEcccc
Confidence 44568899999999999999998877774 3 3444455443
|
|
| >KOG0069|consensus | Back alignment and domain information |
|---|
Probab=87.66 E-value=2 Score=42.59 Aligned_cols=45 Identities=22% Similarity=0.256 Sum_probs=33.8
Q ss_pred cccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcC
Q psy17528 41 PIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTS 89 (366)
Q Consensus 41 ~~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~ 89 (366)
+......+|+|+|.|. |-||+.++++|..-| ..+.-..|.+....
T Consensus 155 ~~g~~~~gK~vgilG~-G~IG~~ia~rL~~Fg---~~i~y~~r~~~~~~ 199 (336)
T KOG0069|consen 155 PLGYDLEGKTVGILGL-GRIGKAIAKRLKPFG---CVILYHSRTQLPPE 199 (336)
T ss_pred cccccccCCEEEEecC-cHHHHHHHHhhhhcc---ceeeeecccCCchh
Confidence 3345567899999995 999999999998864 66666677655433
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=87.62 E-value=3.2 Score=40.72 Aligned_cols=36 Identities=33% Similarity=0.339 Sum_probs=31.5
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+++++|.|.| .|-||+.+++.|..-| .+|++.+|..
T Consensus 134 l~g~tvgIvG-~G~IG~~vA~~l~afG---~~V~~~~~~~ 169 (312)
T PRK15469 134 REDFTIGILG-AGVLGSKVAQSLQTWG---FPLRCWSRSR 169 (312)
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHCC---CEEEEEeCCC
Confidence 5689999998 7999999999999888 7888888754
|
|
| >TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein | Back alignment and domain information |
|---|
Probab=87.58 E-value=3.9 Score=43.66 Aligned_cols=87 Identities=10% Similarity=0.146 Sum_probs=53.9
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
+..+|+|.|. |.+|++++..|+..|. .+|.+++-... .+...||-++ -+ .. ++
T Consensus 128 R~akVlVlG~-Gg~~s~lv~sL~~sG~--~~I~~vd~D~v-~SNlnRIgEl-~e----~A----------------~~-- 180 (637)
T TIGR03693 128 RNAKILAAGS-GDFLTKLVRSLIDSGF--PRFHAIVTDAE-EHALDRIHEL-AE----IA----------------EE-- 180 (637)
T ss_pred hcccEEEEec-CchHHHHHHHHHhcCC--CcEEEEecccc-chhhhHHHHH-HH----HH----------------HH--
Confidence 6789999995 6679999999999984 56655544332 2222332222 10 00 00
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcc
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAAT 183 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~ 183 (366)
..+.+.+-..+..+.. ++...++++|+|++.+..
T Consensus 181 -----------------~n~~v~v~~i~~~~~~------dl~ev~~~~DiVi~vsDd 214 (637)
T TIGR03693 181 -----------------TDDALLVQEIDFAEDQ------HLHEAFEPADWVLYVSDN 214 (637)
T ss_pred -----------------hCCCCceEeccCCcch------hHHHhhcCCcEEEEECCC
Confidence 1234444444554444 788899999999998764
|
Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein. |
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=87.02 E-value=0.98 Score=45.23 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=30.0
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
++|+|+|| |++|..++.+|.+.| .+|+++.|..
T Consensus 2 ~~vvIIGa-G~~G~~~A~~La~~g---~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGA-GITGVTTAYALAQRG---YQVTVFDRHR 34 (410)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCC---CeEEEEeCCC
Confidence 58999995 999999999999998 8899999964
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=86.93 E-value=2.4 Score=36.99 Aligned_cols=32 Identities=28% Similarity=0.334 Sum_probs=28.9
Q ss_pred eEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 50 ~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
||.|.|| |-.|.+++..|.++| ++|.+..|++
T Consensus 1 KI~ViGa-G~~G~AlA~~la~~g---~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGA-GNWGTALAALLADNG---HEVTLWGRDE 32 (157)
T ss_dssp EEEEESS-SHHHHHHHHHHHHCT---EEEEEETSCH
T ss_pred CEEEECc-CHHHHHHHHHHHHcC---CEEEEEeccH
Confidence 6889995 888999999999998 9999999974
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=86.89 E-value=0.69 Score=47.06 Aligned_cols=40 Identities=30% Similarity=0.470 Sum_probs=34.4
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
..++++++||.|| |=+|..++++|.+.| +.+|+++.|+..
T Consensus 174 ~~L~~~~vlvIGA-Gem~~lva~~L~~~g--~~~i~IaNRT~e 213 (414)
T COG0373 174 GSLKDKKVLVIGA-GEMGELVAKHLAEKG--VKKITIANRTLE 213 (414)
T ss_pred cccccCeEEEEcc-cHHHHHHHHHHHhCC--CCEEEEEcCCHH
Confidence 3367899999995 999999999999996 589999999853
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=86.36 E-value=1.3 Score=42.50 Aligned_cols=37 Identities=30% Similarity=0.374 Sum_probs=32.3
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.++++++|+|+ |.+|.+++..|...| +.+|++++|+.
T Consensus 121 ~~~k~vlVlGa-Gg~a~ai~~aL~~~g--~~~V~v~~R~~ 157 (278)
T PRK00258 121 LKGKRILILGA-GGAARAVILPLLDLG--VAEITIVNRTV 157 (278)
T ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHcC--CCEEEEEeCCH
Confidence 45789999996 999999999999885 47899999974
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=86.23 E-value=0.99 Score=44.69 Aligned_cols=33 Identities=24% Similarity=0.496 Sum_probs=25.4
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIR 83 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R 83 (366)
++|.|+|+||++|++|++.|.++ +.+ .|..+..
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~-~~~-~l~~v~~ 33 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKH-PYF-ELAKVVA 33 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-CCc-eEEEEEE
Confidence 47999999999999999988776 343 5555533
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated | Back alignment and domain information |
|---|
Probab=86.22 E-value=2.5 Score=42.20 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=29.8
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
+.++|+|+|+ |.+|..++..+.+.| .+|++++.++.
T Consensus 11 ~~~~ilIiG~-g~~~~~~~~a~~~~G---~~v~~~~~~~~ 46 (395)
T PRK09288 11 SATRVMLLGS-GELGKEVAIEAQRLG---VEVIAVDRYAN 46 (395)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCC---CEEEEEeCCCC
Confidence 3468999985 789999999999998 78888887654
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.20 E-value=1.1 Score=41.53 Aligned_cols=35 Identities=29% Similarity=0.325 Sum_probs=28.4
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
||++.|.| ||-||+.|++.|.+.| +.|++..|+.+
T Consensus 1 m~~~~i~G-tGniG~alA~~~a~ag---~eV~igs~r~~ 35 (211)
T COG2085 1 MMIIAIIG-TGNIGSALALRLAKAG---HEVIIGSSRGP 35 (211)
T ss_pred CcEEEEec-cChHHHHHHHHHHhCC---CeEEEecCCCh
Confidence 35666665 8999999999999998 88888877654
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=86.18 E-value=16 Score=37.23 Aligned_cols=37 Identities=14% Similarity=0.242 Sum_probs=30.8
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
+.+++|+|+|+ |..|..+++.|.+.| .+|.+.+....
T Consensus 3 ~~~~~~~v~G~-g~~G~~~a~~l~~~g---~~v~~~d~~~~ 39 (445)
T PRK04308 3 FQNKKILVAGL-GGTGISMIAYLRKNG---AEVAAYDAELK 39 (445)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCC---CEEEEEeCCCC
Confidence 35789999997 579999999999998 78888887643
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.16 E-value=2.4 Score=41.14 Aligned_cols=35 Identities=29% Similarity=0.322 Sum_probs=30.5
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
+++|.|.| +|-+|..++..|.+.| +.|.+.+|+..
T Consensus 4 ~m~I~iiG-~G~~G~~lA~~l~~~G---~~V~~~~r~~~ 38 (308)
T PRK14619 4 PKTIAILG-AGAWGSTLAGLASANG---HRVRVWSRRSG 38 (308)
T ss_pred CCEEEEEC-ccHHHHHHHHHHHHCC---CEEEEEeCCCC
Confidence 46899998 5999999999999998 78888888753
|
|
| >TIGR01408 Ube1 ubiquitin-activating enzyme E1 | Back alignment and domain information |
|---|
Probab=86.06 E-value=8.1 Score=43.92 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=34.0
Q ss_pred ccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 42 IQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 42 ~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.+..++..+|||.|+ |.+|.++++.|...| |.+|++++...
T Consensus 18 aq~kL~~s~VLIiG~-gGLG~EiaKnL~laG--Vg~iti~D~d~ 58 (1008)
T TIGR01408 18 AMQKMAKSNVLISGM-GGLGLEIAKNLVLAG--VKSVTLHDTEK 58 (1008)
T ss_pred HHHHHhhCcEEEECC-CHHHHHHHHHHHHcC--CCeEEEEeCCe
Confidence 346677889999996 669999999999996 68899888754
|
This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. |
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.97 E-value=3 Score=41.91 Aligned_cols=36 Identities=19% Similarity=0.118 Sum_probs=29.5
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcC
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRT 84 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~ 84 (366)
..++|.|.|.+|.+|..+++.|.+. . ..+|+.+++.
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~-~-~~~V~g~D~~ 38 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTR-M-QLEVIGHDPA 38 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhc-C-CCEEEEEcCC
Confidence 3579999999999999999999876 1 2678887764
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=85.96 E-value=0.65 Score=47.30 Aligned_cols=37 Identities=35% Similarity=0.555 Sum_probs=32.0
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.++++|+|+|+ |-+|..+++.|...| +.+|++.+|+.
T Consensus 178 l~~~~VlViGa-G~iG~~~a~~L~~~G--~~~V~v~~rs~ 214 (417)
T TIGR01035 178 LKGKKALLIGA-GEMGELVAKHLLRKG--VGKILIANRTY 214 (417)
T ss_pred ccCCEEEEECC-hHHHHHHHHHHHHCC--CCEEEEEeCCH
Confidence 56799999996 999999999998875 57899999974
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=85.92 E-value=1.6 Score=37.32 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=31.2
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.++++|+|+|+ |.+|..+++.|.+.| .+.|++.+|+.
T Consensus 17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g--~~~v~v~~r~~ 53 (155)
T cd01065 17 LKGKKVLILGA-GGAARAVAYALAELG--AAKIVIVNRTL 53 (155)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCC--CCEEEEEcCCH
Confidence 45789999997 999999999999884 37888988874
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK06901 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.70 E-value=2.2 Score=42.09 Aligned_cols=36 Identities=25% Similarity=0.153 Sum_probs=30.9
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRT 84 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~ 84 (366)
-.+|.| ||||-+|+.+++-|-+++..+.++.++...
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~ 38 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIE 38 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcCCchhheeecccc
Confidence 357999 999999999999999888888888777665
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=85.64 E-value=3 Score=43.28 Aligned_cols=36 Identities=17% Similarity=0.368 Sum_probs=29.8
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+|+|.|.| +|++|..++..|.+.|.+ .+|++++.++
T Consensus 1 ~m~I~ViG-~GyvGl~~A~~lA~~g~g-~~V~gvD~~~ 36 (473)
T PLN02353 1 MVKICCIG-AGYVGGPTMAVIALKCPD-IEVVVVDISV 36 (473)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcCCC-CeEEEEECCH
Confidence 47899997 699999999999988532 6788998864
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.56 E-value=1.7 Score=38.25 Aligned_cols=40 Identities=13% Similarity=0.172 Sum_probs=33.0
Q ss_pred CCcccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEE
Q psy17528 39 LSPIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLI 82 (366)
Q Consensus 39 ~~~~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~ 82 (366)
+-|+.=.+++++|+|.|| |-+|...++.|++.| ..|++++
T Consensus 4 ~~P~~l~l~~~~vlVvGG-G~va~rka~~Ll~~g---a~V~VIs 43 (157)
T PRK06719 4 MYPLMFNLHNKVVVIIGG-GKIAYRKASGLKDTG---AFVTVVS 43 (157)
T ss_pred ccceEEEcCCCEEEEECC-CHHHHHHHHHHHhCC---CEEEEEc
Confidence 345555678999999996 999999999999998 7777774
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=85.30 E-value=3.9 Score=42.62 Aligned_cols=34 Identities=12% Similarity=0.137 Sum_probs=30.2
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
++|.|.| +|.+|+.++..|++.| +.|++.+++++
T Consensus 5 ~kIavIG-~G~MG~~iA~~la~~G---~~V~v~D~~~~ 38 (495)
T PRK07531 5 MKAACIG-GGVIGGGWAARFLLAG---IDVAVFDPHPE 38 (495)
T ss_pred CEEEEEC-cCHHHHHHHHHHHhCC---CeEEEEeCCHH
Confidence 5799997 6999999999999999 78999999754
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.17 E-value=4.4 Score=39.59 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=31.4
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.+.++++.|.| .|-||+.+++.+..-| -+|++.+|..
T Consensus 142 ~L~gktvGIiG-~G~IG~~vA~~~~~fg---m~V~~~d~~~ 178 (311)
T PRK08410 142 EIKGKKWGIIG-LGTIGKRVAKIAQAFG---AKVVYYSTSG 178 (311)
T ss_pred ccCCCEEEEEC-CCHHHHHHHHHHhhcC---CEEEEECCCc
Confidence 46799999998 6999999999997766 6898888853
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=85.16 E-value=2.8 Score=40.69 Aligned_cols=33 Identities=12% Similarity=0.297 Sum_probs=28.7
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEE
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILL 81 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~ 81 (366)
+++++|+|.|.++.+|.-++.-|++.| .+|+..
T Consensus 156 l~Gk~vvViGrs~iVGkPla~lL~~~~---atVt~~ 188 (285)
T PRK14189 156 LRGAHAVVIGRSNIVGKPMAMLLLQAG---ATVTIC 188 (285)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCC---CEEEEe
Confidence 468999999999999999999999887 677653
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.16 E-value=5.7 Score=37.36 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=27.7
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
++|.|.| .|.||..+++.+...--.+..+.+.+|+.+
T Consensus 1 l~vgiVG-cGaIG~~l~e~v~~~~~~~e~v~v~D~~~e 37 (255)
T COG1712 1 LKVGIVG-CGAIGKFLLELVRDGRVDFELVAVYDRDEE 37 (255)
T ss_pred CeEEEEe-ccHHHHHHHHHHhcCCcceeEEEEecCCHH
Confidence 3688998 699999999888654234577888888754
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=85.00 E-value=2.3 Score=42.70 Aligned_cols=35 Identities=14% Similarity=0.147 Sum_probs=30.0
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
...+|+|+|+ |-+|..+++.|...| .+|++++|+.
T Consensus 166 ~~~~VlViGa-G~vG~~aa~~a~~lG---a~V~v~d~~~ 200 (370)
T TIGR00518 166 EPGDVTIIGG-GVVGTNAAKMANGLG---ATVTILDINI 200 (370)
T ss_pred CCceEEEEcC-CHHHHHHHHHHHHCC---CeEEEEECCH
Confidence 4677999986 899999999999998 5789998864
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=84.99 E-value=3.2 Score=40.29 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=29.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIR 83 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R 83 (366)
+++++|+|+|-+..+|.-++.-|++.| ..|++..+
T Consensus 157 l~Gk~vvViGrs~iVG~Pla~lL~~~~---atVtv~hs 191 (285)
T PRK10792 157 TYGLNAVVVGASNIVGRPMSLELLLAG---CTVTVCHR 191 (285)
T ss_pred CCCCEEEEECCCcccHHHHHHHHHHCC---CeEEEEEC
Confidence 468999999999999999999999887 67766544
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=84.82 E-value=1.4 Score=43.40 Aligned_cols=35 Identities=23% Similarity=0.435 Sum_probs=27.1
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRT 84 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~ 84 (366)
+.+|.|.|||||+|..|++.|.++ +.+ .+..+.++
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~h-p~~-~l~~~~s~ 36 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGR-SDI-ELLSIPEA 36 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcC-CCe-EEEEEecC
Confidence 468999999999999999988888 454 44444443
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=84.76 E-value=2.3 Score=43.00 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=29.6
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
++|.|.| .|++|..++..|.+.| ++|++++++..
T Consensus 1 mkI~vIG-lG~~G~~lA~~La~~G---~~V~~~d~~~~ 34 (411)
T TIGR03026 1 MKIAVIG-LGYVGLPLAALLADLG---HEVTGVDIDQE 34 (411)
T ss_pred CEEEEEC-CCchhHHHHHHHHhcC---CeEEEEECCHH
Confidence 3689998 6999999999999998 78999998753
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=84.74 E-value=4.1 Score=41.58 Aligned_cols=37 Identities=30% Similarity=0.487 Sum_probs=31.4
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.++++|+|+|+ |-+|..+++.|...| +.+|++.+|+.
T Consensus 180 ~~~~~vlViGa-G~iG~~~a~~L~~~G--~~~V~v~~r~~ 216 (423)
T PRK00045 180 LSGKKVLVIGA-GEMGELVAKHLAEKG--VRKITVANRTL 216 (423)
T ss_pred ccCCEEEEECc-hHHHHHHHHHHHHCC--CCeEEEEeCCH
Confidence 56799999986 999999999998876 35888998874
|
|
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=84.66 E-value=1.6 Score=43.69 Aligned_cols=37 Identities=22% Similarity=0.195 Sum_probs=32.8
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
++++|||||+...+|..+++.|.+.| .+|++++....
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G---~~Vi~~d~~~~ 39 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAG---HTVILADSLKY 39 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCch
Confidence 36899999999999999999999998 88998888753
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.65 E-value=3.2 Score=41.56 Aligned_cols=35 Identities=29% Similarity=0.315 Sum_probs=30.3
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
+++|.|.|+ |.+|.-++..-.+-| .+|++++-+.+
T Consensus 1 ~~tvgIlGG-GQLgrMm~~aa~~lG---~~v~vLdp~~~ 35 (375)
T COG0026 1 MKTVGILGG-GQLGRMMALAAARLG---IKVIVLDPDAD 35 (375)
T ss_pred CCeEEEEcC-cHHHHHHHHHHHhcC---CEEEEecCCCC
Confidence 478999995 999999999999998 88888887654
|
|
| >KOG2018|consensus | Back alignment and domain information |
|---|
Probab=84.57 E-value=5.7 Score=39.09 Aligned_cols=40 Identities=28% Similarity=0.394 Sum_probs=31.5
Q ss_pred cccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 43 QEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 43 ~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
++..+++-|.|.|+ |.+|++++.-|++.| +.++.+++-.+
T Consensus 69 m~kl~~syVVVVG~-GgVGSwv~nmL~RSG--~qKi~iVDfdq 108 (430)
T KOG2018|consen 69 MEKLTNSYVVVVGA-GGVGSWVANMLLRSG--VQKIRIVDFDQ 108 (430)
T ss_pred HHHhcCcEEEEEec-CchhHHHHHHHHHhc--CceEEEechhh
Confidence 34556788999985 779999999999996 57777776654
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.52 E-value=1.4 Score=45.29 Aligned_cols=34 Identities=29% Similarity=0.260 Sum_probs=30.6
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
|+|.|+||+|.+|..+++.|.+.| ..|.+.+|+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G---~~V~v~~r~~ 34 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKG---FEVIVTGRDP 34 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCC---CEEEEEECCh
Confidence 479999999999999999999998 6888999874
|
|
| >cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=84.50 E-value=1.6 Score=41.68 Aligned_cols=37 Identities=24% Similarity=0.343 Sum_probs=32.2
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.++.+++|+||+|.+|..+++.+...| .+|+++++++
T Consensus 161 ~~~~~vlI~ga~g~vG~~~~~~a~~~g---~~v~~~~~~~ 197 (332)
T cd08259 161 KKGDTVLVTGAGGGVGIHAIQLAKALG---ARVIAVTRSP 197 (332)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcC---CeEEEEeCCH
Confidence 357899999999999999999999998 7788888764
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. |
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=84.43 E-value=1.2 Score=43.73 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=27.1
Q ss_pred eEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEc
Q psy17528 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIR 83 (366)
Q Consensus 50 ~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R 83 (366)
+|.|.||+||.|..|++.|.++ |.+.-+.+..+
T Consensus 3 ~v~IvGasGy~G~el~rlL~~H-P~~el~~l~s~ 35 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGR-DDIELLSIAPD 35 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCC-CCeEEEEEecc
Confidence 7999999999999999999998 67655554444
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=84.38 E-value=4.5 Score=39.49 Aligned_cols=37 Identities=27% Similarity=0.426 Sum_probs=31.3
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
..+++|+|.|+ |-+|..+++.|...| ..+|++++|+.
T Consensus 176 l~~~~V~ViGa-G~iG~~~a~~L~~~g--~~~V~v~~r~~ 212 (311)
T cd05213 176 LKGKKVLVIGA-GEMGELAAKHLAAKG--VAEITIANRTY 212 (311)
T ss_pred ccCCEEEEECc-HHHHHHHHHHHHHcC--CCEEEEEeCCH
Confidence 46899999996 999999999998754 47899999874
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=84.22 E-value=18 Score=36.85 Aligned_cols=33 Identities=15% Similarity=0.127 Sum_probs=27.9
Q ss_pred eEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 50 ~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
+|+|.|+ |-.|...++.|.+.| ..|.+.++...
T Consensus 2 ~v~viG~-G~sG~s~a~~l~~~G---~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGL-GRSGIAAARLLKAQG---WEVVVSDRNDS 34 (459)
T ss_pred eEEEEcc-CHHHHHHHHHHHHCC---CEEEEECCCCc
Confidence 5899995 778999999999998 78989887653
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.78 E-value=5.3 Score=39.00 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=31.1
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.+.+++|.|.| .|-||+.+++.|..-| .+|++.+|+.
T Consensus 119 ~L~gktvgIiG-~G~IG~~vA~~l~afG---~~V~~~~r~~ 155 (303)
T PRK06436 119 LLYNKSLGILG-YGGIGRRVALLAKAFG---MNIYAYTRSY 155 (303)
T ss_pred CCCCCEEEEEC-cCHHHHHHHHHHHHCC---CEEEEECCCC
Confidence 46799999998 6999999998776667 6888888863
|
|
| >cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2 | Back alignment and domain information |
|---|
Probab=83.69 E-value=8.5 Score=39.57 Aligned_cols=35 Identities=17% Similarity=0.278 Sum_probs=27.6
Q ss_pred eEEEeCCcchHHHHHHHHHHHhCCC---ccEEEEEEcCC
Q psy17528 50 TIFITGATGFLGSLLVEKLLRCCPQ---IRKIILLIRTR 85 (366)
Q Consensus 50 ~ilItGatG~IG~~lv~~Ll~~g~~---~~~V~~~~R~~ 85 (366)
+|+|.| +|.+|..+++.|...|.. -.+|++++...
T Consensus 1 kVlvVG-aGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~ 38 (435)
T cd01490 1 KVFLVG-AGAIGCELLKNFALMGVGTGESGEITVTDMDN 38 (435)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCcCCCCeEEEECCCC
Confidence 589998 588999999999998721 06888888754
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1. |
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=83.42 E-value=1.7 Score=45.77 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=31.5
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+++++++|+|+ |.+|++++..|.+.| .+|+++.|+.
T Consensus 377 ~~~k~vlIlGa-GGagrAia~~L~~~G---~~V~i~nR~~ 412 (529)
T PLN02520 377 LAGKLFVVIGA-GGAGKALAYGAKEKG---ARVVIANRTY 412 (529)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCC---CEEEEEcCCH
Confidence 56789999998 899999999999997 5888888863
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=83.38 E-value=0.87 Score=47.81 Aligned_cols=37 Identities=27% Similarity=0.503 Sum_probs=32.1
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+.+++|+|+|+ |-+|..+++.|...| +.+|+++.|+.
T Consensus 264 l~~kkVlVIGA-G~mG~~~a~~L~~~G--~~~V~V~nRs~ 300 (519)
T PLN00203 264 HASARVLVIGA-GKMGKLLVKHLVSKG--CTKMVVVNRSE 300 (519)
T ss_pred CCCCEEEEEeC-HHHHHHHHHHHHhCC--CCeEEEEeCCH
Confidence 55799999997 999999999999886 46899999975
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.30 E-value=9.7 Score=36.51 Aligned_cols=38 Identities=21% Similarity=0.426 Sum_probs=32.6
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
+++|.|.|++|=.|+.+++.+.+. +.+.-+-++.|.++
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~-~~~~L~aa~~~~~~ 39 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEA-PDLELVAAFDRPGS 39 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcC-CCceEEEEEecCCc
Confidence 578999999999999999999988 56677777888764
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=83.15 E-value=5.5 Score=39.64 Aligned_cols=37 Identities=27% Similarity=0.342 Sum_probs=32.4
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.+.+++|.|.| .|-||+.+++.|..-| .+|++.+|+.
T Consensus 156 ~l~gktvGIiG-~G~IG~~vA~~l~afG---~~V~~~dr~~ 192 (347)
T PLN02928 156 TLFGKTVFILG-YGAIGIELAKRLRPFG---VKLLATRRSW 192 (347)
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHhhCC---CEEEEECCCC
Confidence 46799999999 5999999999999887 7899988863
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=83.09 E-value=4.6 Score=39.15 Aligned_cols=33 Identities=21% Similarity=0.360 Sum_probs=28.4
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEE
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILL 81 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~ 81 (366)
+++++|+|.|.+..+|.-++..|++.| ..|++.
T Consensus 155 l~Gk~vvVvGrs~~VG~Pla~lL~~~g---AtVtv~ 187 (285)
T PRK14191 155 IKGKDVVIIGASNIVGKPLAMLMLNAG---ASVSVC 187 (285)
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCC---CEEEEE
Confidence 468999999999999999999999987 666554
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=83.09 E-value=16 Score=29.54 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=24.3
Q ss_pred eEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcC
Q psy17528 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRT 84 (366)
Q Consensus 50 ~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~ 84 (366)
+|.|.|+ |.+|......+++..+.+.-+.+.+++
T Consensus 2 ~v~iiG~-G~~g~~~~~~~~~~~~~~~v~~v~d~~ 35 (120)
T PF01408_consen 2 RVGIIGA-GSIGRRHLRALLRSSPDFEVVAVCDPD 35 (120)
T ss_dssp EEEEEST-SHHHHHHHHHHHHTTTTEEEEEEECSS
T ss_pred EEEEECC-cHHHHHHHHHHHhcCCCcEEEEEEeCC
Confidence 6899996 888999999998885454333344443
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.95 E-value=3.1 Score=42.03 Aligned_cols=36 Identities=25% Similarity=0.288 Sum_probs=31.8
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+.+++|.|.| .|-||+.+++.|..-| .+|+..+|..
T Consensus 190 L~gktVGIvG-~G~IG~~vA~~l~~fG---~~V~~~dr~~ 225 (385)
T PRK07574 190 LEGMTVGIVG-AGRIGLAVLRRLKPFD---VKLHYTDRHR 225 (385)
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHhCC---CEEEEECCCC
Confidence 5689999998 5999999999999887 7898988864
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=82.92 E-value=3.9 Score=39.05 Aligned_cols=36 Identities=19% Similarity=0.346 Sum_probs=28.4
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
++|.|.|++|-+|+.+++.+.+. +.+.-|.+++|..
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~-~~~elvav~d~~~ 37 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAA-EGLQLVAAFERHG 37 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecCC
Confidence 58999999999999999999876 5555555566543
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=82.78 E-value=1.4 Score=35.71 Aligned_cols=36 Identities=17% Similarity=0.294 Sum_probs=30.7
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+++++|+|+|+ |-+|..-++.|++.| .+|++++...
T Consensus 5 l~~~~vlVvGg-G~va~~k~~~Ll~~g---A~v~vis~~~ 40 (103)
T PF13241_consen 5 LKGKRVLVVGG-GPVAARKARLLLEAG---AKVTVISPEI 40 (103)
T ss_dssp -TT-EEEEEEE-SHHHHHHHHHHCCCT---BEEEEEESSE
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHhCC---CEEEEECCch
Confidence 56899999996 999999999999998 8999988863
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 366 | ||||
| 4dqv_A | 478 | Crystal Structure Of Reductase (R) Domain Of Non-Ri | 2e-07 |
| >pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal Peptide Synthetase From Mycobacterium Tuberculosis Length = 478 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Length = 478 | Back alignment and structure |
|---|
Score = 173 bits (441), Expect = 3e-50
Identities = 68/326 (20%), Positives = 108/326 (33%), Gaps = 67/326 (20%)
Query: 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRM 106
+ +T+ +TGATGFLG LV +LLR ++I L+R +R+ F+ + +
Sbjct: 72 ELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELL 131
Query: 107 RLECPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARD 166
R AD++++ V G GL
Sbjct: 132 RHFKELAADRLEV-------------------------------VAGDKSEPDLGLDQPM 160
Query: 167 EELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTAYCN 226
L +I AA V + + NV GT ++ +A K LK F +VSTA
Sbjct: 161 WRRLAETVDLIVDSAAMVNAFPY-HELFGPNVAGTAELIRIALTTK-LKPFTYVSTADVG 218
Query: 227 CDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQ 286
P E+ +D + + GG Y +K E L+R+
Sbjct: 219 AA--------IEPSAFTED--------ADIRVISPTRTVDGGWAGGYGTSKWAGEVLLRE 262
Query: 287 VGHE--LPICVLRPS-IVFPT-------LQEPMPLWIKGFNGVMALALGA---GTGLIRV 333
LP+ V R I+ T + + + + +A G
Sbjct: 263 ANDLCALPVAVFRCGMILADTSYAGQLNMSDWVTRMVLS-----LMATGIAPRSFYEPDS 317
Query: 334 VQTDPNISMDVVPGDRVINAMAALAW 359
D +P V A+A L
Sbjct: 318 EGNRQRAHFDGLPVTFVAEAIAVLGA 343
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 5e-13
Identities = 21/168 (12%), Positives = 42/168 (25%), Gaps = 36/168 (21%)
Query: 175 TIIFHIAATVRFD-EHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTAYCNCDRKFIA 233
+ A + + T A + + ++V +A
Sbjct: 79 DGVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQA-RVPRILYVGSA---------- 127
Query: 234 EKFYPPVFTAEELSALVAHASDEEIALLNE----HIIGGKPNSYTLTKATAEDLVRQVGH 289
A + +E + +SY L K ++ R+
Sbjct: 128 ----------------YAMPRHPQGLPGHEGLFYDSLPSGKSSYVLCKWALDEQAREQAR 171
Query: 290 E-LPICVLRPSIVF-PTLQEPMP--LWIKGFNGVMALALGAGTGLIRV 333
LP+ + P +V P + NG M + +I
Sbjct: 172 NGLPVVIGIPGMVLGELDIGPTTGRVITAIGNGEMTHYVAGQRNVIDA 219
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 5e-04
Identities = 7/33 (21%), Positives = 10/33 (30%)
Query: 38 TLSPIQEFYKDQTIFITGATGFLGSLLVEKLLR 70
P+ + GATG LG +
Sbjct: 3 DEQPLSRPGAHVKYAVLGATGLLGHHAARAIRA 35
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Length = 311 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 1e-08
Identities = 41/257 (15%), Positives = 68/257 (26%), Gaps = 102/257 (39%)
Query: 51 IFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLEC 110
I +TG TGFLG +VE + + R
Sbjct: 5 IAVTGGTGFLGQYVVESIKNDGNTPI-------------------------ILTRS---- 35
Query: 111 PNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELL 170
I ++ N + V D + N + VD V
Sbjct: 36 ----------IGNKAINDYEYRVSDYTLEDLINQLNDVDAV------------------- 66
Query: 171 ISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTA--YCNCD 228
H+AAT I ++ N TQ + + + V+ ST Y +
Sbjct: 67 -------VHLAATRGSQGKISE-FHDNEILTQNLYDACYE-NNISNIVYASTISAYSDET 117
Query: 229 RKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNS-YTLTKATAEDLVRQV 287
P +E+ P+ Y ++K E +
Sbjct: 118 --------SLPW--------------NEKELP--------LPDLMYGVSKLACEHIGNIY 147
Query: 288 GHE--LPICVLRPSIVF 302
+ L I LR + ++
Sbjct: 148 SRKKGLCIKNLRFAHLY 164
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 6e-08
Identities = 55/369 (14%), Positives = 117/369 (31%), Gaps = 96/369 (26%)
Query: 14 HHPDLMDWNLLDKEDEGKELLSDETLSPIQEFYKDQTIFITGATGFLGSLL----VEKLL 69
HH MD+ + + + K++LS F + S+L ++ ++
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVF----EDAFVDN--FDCKDVQDMPKSILSKEEIDHII 55
Query: 70 RCCP---QIRKIILLIRTRGSTSITQRV-----YNYFNDAVFDRMRLEC--P-----NYA 114
++ + ++ + + V NY + ++ E P Y
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY--KFLMSPIKTEQRQPSMMTRMYI 113
Query: 115 DKVDIGITHRVYNYFNDAVFDRM---RLEC------------PNYADKVDIVCGQ----- 154
++ D R+YN ++ VF + RL+ P V ++ G
Sbjct: 114 EQRD-----RLYN--DNQVFAKYNVSRLQPYLKLRQALLELRPA--KNV-LIDGVLGSGK 163
Query: 155 --LEADTFGLSARDEELLISQTTIIF--HIAATVRFDEHIRTAYNINVKGTQTILALAKR 210
+ D ++ IF ++ + + + + + +
Sbjct: 164 TWVALDV----CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 211 MKGLKSFVHVSTAYCNCDRKFIAEKFYPP-------VFTAEELSA-------LV----AH 252
+K +H A R+ + K Y V A+ +A L+
Sbjct: 220 SSNIKLRIHSIQAE---LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276
Query: 253 ASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQV----GHELP--ICVLRP---SIVFP 303
+D A HI +S TLT + L+ + +LP + P SI+
Sbjct: 277 VTDFLSAATTTHIS-LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 304 TLQEPMPLW 312
++++ + W
Sbjct: 336 SIRDGLATW 344
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Length = 377 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 1e-07
Identities = 25/133 (18%), Positives = 40/133 (30%), Gaps = 28/133 (21%)
Query: 176 IIFHIAA---TVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTAYCNCDRKFI 232
+FH+A + N T + K K LK V+ + I
Sbjct: 102 YVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCS------I 155
Query: 233 AEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNS-YTLTKATAEDLVR--QVGH 289
AEK + EE + + +S Y+++K E H
Sbjct: 156 AEKTFDDAKATEET----------------DIVSLHNNDSPYSMSKIFGEFYSVYYHKQH 199
Query: 290 ELPICVLRPSIVF 302
+LP R V+
Sbjct: 200 QLPTVRARFQNVY 212
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 2e-07
Identities = 25/192 (13%), Positives = 49/192 (25%), Gaps = 46/192 (23%)
Query: 165 RDEEL---LISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVS 221
D +++ I H+ + ++ N+ G + A+ G V S
Sbjct: 53 ADANAVNAMVAGCDGIVHLGG-ISVEKPFEQILQGNIIGLYNLYEAARAH-GQPRIVFAS 110
Query: 222 T--AYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNS-YTLTKA 278
+ + + ++ +P+ Y ++K
Sbjct: 111 SNHTIGYYPQ-------TERL--------------GPDVPA--------RPDGLYGVSKC 141
Query: 279 TAEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQT 336
E+L R ++R P L + LI V
Sbjct: 142 FGENLARMYFDKFGQETALVRIGSCTPEPNNYRMLS-------TWFSHDDFVSLIEAVFR 194
Query: 337 DPNISMDVVPGD 348
P + VV G
Sbjct: 195 APVLGCPVVWGA 206
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* Length = 404 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 3e-07
Identities = 38/299 (12%), Positives = 67/299 (22%), Gaps = 71/299 (23%)
Query: 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLE 109
+ + G G+ G L + V D + R+
Sbjct: 13 RVMVIGGDGYCGWATALHLSKK-------------------NYEVCIV--DNLVRRLFDH 51
Query: 110 CPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEEL 169
I H + + + L DI D E
Sbjct: 52 QLGLESLTPIASIHDRISRWKALTGKSIELY------VGDI--------------CDFEF 91
Query: 170 L---ISQTTI--IFHIAA------TVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFV 218
L + H ++ + NV GT +L K V
Sbjct: 92 LAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLV 151
Query: 219 HVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNS-YTLTK 277
+ T E P + E + + + +S Y L+K
Sbjct: 152 KLGTM---------GEYGTPNIDIEEGYITI------THNGRTDTLPYPKQASSFYHLSK 196
Query: 278 ATAEDLVRQVGHE--LPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVV 334
+ + L +V+ + + + N + GT L R
Sbjct: 197 VHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNR-LDYDAVFGTALNRFC 254
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Length = 317 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 5e-06
Identities = 35/173 (20%), Positives = 58/173 (33%), Gaps = 43/173 (24%)
Query: 149 DIVCGQLEADTF-GLSARDEELLIS-----QTTIIFHIAA--TVRFDEHIRTAYNINVKG 200
DIV F L + + + IFH+A + + ++ AY +N+ G
Sbjct: 32 DIVQRDTGGIKFITLDVSNRDEIDRAVEKYSIDAIFHLAGILSAKGEKDPALAYKVNMNG 91
Query: 201 TQTILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYP--PVFTAEELSALVAHASDEEI 258
T IL AK+ ++ V ST F P P ++
Sbjct: 92 TYNILEAAKQ-HRVEKVVIPST----------IGVFGPETPKNKVPSITIT--------- 131
Query: 259 ALLNEHIIGGKPNS-YTLTKATAEDLVRQVGHE--LPICVLRPSIVFPTLQEP 308
+P + + +TK AE L + + L + LR + EP
Sbjct: 132 ----------RPRTMFGVTKIAAELLGQYYYEKFGLDVRSLRYPGIISYKAEP 174
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} Length = 362 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 39/262 (14%), Positives = 68/262 (25%), Gaps = 86/262 (32%)
Query: 42 IQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDA 101
I + ++QTI ITG GF+GS L +V
Sbjct: 4 IDDELENQTILITGGAGFVGSNLAFHFQE--------------NH---PKAKVV------ 40
Query: 102 VFDRMRLECPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFG 161
V D+ R + ++ N F K +++ +
Sbjct: 41 VLDKFRS-----NTLFSNNRPSSLGHFKNLIGF------------KGEVIAADINNP--- 80
Query: 162 LSARDEELLISQTTIIFHIAA---TVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFV 218
L +FH AA T ++ N + +L +A+ K +
Sbjct: 81 --LDLRRLEKLHFDYLFHQAAVSDTTMLNQ--ELVMKTNYQAFLNLLEIARSKK--AKVI 134
Query: 219 HVSTA--YCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNS-YTL 275
+ S+A Y N P + Y
Sbjct: 135 YASSAGVYGN-----------TKAPNVVG--------------------KNESPENVYGF 163
Query: 276 TKATAEDLVRQVGHELPICVLR 297
+K ++ V ++ LR
Sbjct: 164 SKLCMDEFVLSHSNDNVQVGLR 185
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} Length = 267 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 3e-05
Identities = 31/177 (17%), Positives = 52/177 (29%), Gaps = 43/177 (24%)
Query: 177 IFHIAATVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVST--AYCNCDRKFIAE 234
I H+ V + N+ G + A R G V S+ R
Sbjct: 67 IIHLGG-VSVERPWNDILQANIIGAYNLYEAA-RNLGKPRIVFASSNHTIGYYPR----- 119
Query: 235 KFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNS-YTLTKATAEDLVRQVGHE--L 291
+ D E+ +P+S Y L+K EDL H+ +
Sbjct: 120 --TTRI--------------DTEVPR--------RPDSLYGLSKCFGEDLASLYYHKFDI 155
Query: 292 PICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGD 348
+R FP ++ + L++ L++ P + VV G
Sbjct: 156 ETLNIRIGSCFPKPKDARMMA-------TWLSVDDFMRLMKRAFVAPKLGCTVVYGA 205
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} Length = 321 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 4e-05
Identities = 39/265 (14%), Positives = 65/265 (24%), Gaps = 110/265 (41%)
Query: 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLE 109
I ITG GF+G L L+ G + V V D +
Sbjct: 9 RILITGGAGFIGGHLARALVA--------------SG-----EEV------TVLDDL--- 40
Query: 110 CPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEEL 169
+ + V + + + V +V
Sbjct: 41 --RVPPMIPP---EGTGKFLEKPVLELEERDLSD----VRLV------------------ 73
Query: 170 LISQTTIIFHIAATVRFDEHIR------TAYNINVKGTQTILALAKRMKGLKSFVHVSTA 223
+H+A+ + Y NV + +LAL G+ V ST
Sbjct: 74 --------YHLASHK----SVPRSFKQPLDYLDNVDSGRHLLALCTS-VGVPKVVVGSTC 120
Query: 224 --YCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNS-YTLTKATA 280
Y + E + + P S Y +K
Sbjct: 121 EVYGQ-----------ADT-----------LPTPE------DSPLS--PRSPYAASKVGL 150
Query: 281 EDLVR--QVGHELP-ICVLRPSIVF 302
E + Q P + ++R V+
Sbjct: 151 EMVAGAHQRASVAPEVGIVRFFNVY 175
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* Length = 357 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 4e-05
Identities = 49/307 (15%), Positives = 88/307 (28%), Gaps = 112/307 (36%)
Query: 4 ELMKEISGKSHHPDLMDWNLLDKEDEGKELLSDETLSPIQEFYKDQTIFITGATGFLGSL 63
MKE + MD L G + + + I +TG GF+GS
Sbjct: 16 SGMKETAAAKFERQHMDSPDLG-TGGGSGI-------------EGRMIIVTGGAGFIGSN 61
Query: 64 LVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123
+V+ L +G T I V D ++ K +
Sbjct: 62 IVKALND--------------KGITDIL----------VVDNLKD-----GTKFVNLVDL 92
Query: 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAA- 182
+ +Y + F +++ V+ + FH A
Sbjct: 93 NIADYMDKEDF-LIQIMAGEEFGDVEAI--------------------------FHEGAC 125
Query: 183 --TVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTA--YCNCDRKFIAEKFYP 238
T +D + + N + ++ +L + F++ S+A Y FI + Y
Sbjct: 126 SSTTEWDG--KYMMDNNYQYSKELLHYCLERE--IPFLYASSAATYGGRTSDFIESREYE 181
Query: 239 PVFTAEELSALVAHASDEEIALLNEHIIGGKPNS-YTLTKATAEDLVRQVGHE--LPICV 295
KP + + +K ++ VRQ+ E I
Sbjct: 182 ------------------------------KPLNVFGYSKFLFDEYVRQILPEANSQIVG 211
Query: 296 LRPSIVF 302
R V+
Sbjct: 212 FRYFNVY 218
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A Length = 369 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 1e-04
Identities = 30/193 (15%), Positives = 56/193 (29%), Gaps = 53/193 (27%)
Query: 168 ELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTAYCNC 227
E + + I H+A R EH + NV +L + R K + +S++
Sbjct: 41 ESALLKADFIVHLAGVNRP-EHDKEFSLGNVSYLDHVLDILTR-NTKKPAILLSSS---- 94
Query: 228 DRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQV 287
I + N Y +K E L+R+
Sbjct: 95 -------------------------------------IQATQDNPYGESKLQGEQLLREY 117
Query: 288 GHE--LPICVLRPSIVFPTLQEP-MPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDV 344
E + + R +F +P I F +A + D N+ + +
Sbjct: 118 AEEYGNTVYIYRWPNLFGKWCKPNYNSVIATFCYKIA----RNEEIQV---NDRNVELTL 170
Query: 345 VPGDRVINAMAAL 357
D ++ +
Sbjct: 171 NYVDDIVAEIKRA 183
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* Length = 379 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 30/182 (16%), Positives = 48/182 (26%), Gaps = 68/182 (37%)
Query: 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRM 106
++ I ITGA GF+ S + +L G I
Sbjct: 28 ENLKISITGAGGFIASHIARRLKH--------------EGHYVIA--------------- 58
Query: 107 RLECPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARD 166
D + F + L KV D
Sbjct: 59 ----------SDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVT-----EGVD-------- 95
Query: 167 EELLISQTTIIFHIAATV-----RFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVS 221
+F++AA + H YN N + ++ A+ G+K F + S
Sbjct: 96 ---------HVFNLAADMGGMGFIQSNHSVIMYN-NTMISFNMIEAARI-NGIKRFFYAS 144
Query: 222 TA 223
+A
Sbjct: 145 SA 146
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* Length = 253 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 2e-04
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85
T+ +TGA+G G ++ +KL + L+R+
Sbjct: 5 PTVLVTGASGRTGQIVYKKLKEGSDKFV-AKGLVRSA 40
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* Length = 357 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 2e-04
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 43 QEFYKDQTIFITGATGFLGSLLVEKLLR 70
F++ + +F+TG TGF G L L
Sbjct: 4 NSFWQGKRVFVTGHTGFKGGWLSLWLQT 31
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* Length = 344 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 6e-04
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 35 SDETLSPIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIR 83
++ Q +QTI ITG TG G V K+L +KII+ R
Sbjct: 8 GSMSMPNHQNMLDNQTILITGGTGSFGKCFVRKVLD-TTNAKKIIVYSR 55
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A Length = 242 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 7e-04
Identities = 11/37 (29%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIR 83
+++++FI GA+G G +L++++L K+ L+ R
Sbjct: 17 QNKSVFILGASGETGRVLLKEILE-QGLFSKVTLIGR 52
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 8e-04
Identities = 28/181 (15%), Positives = 54/181 (29%), Gaps = 61/181 (33%)
Query: 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLE 109
I I GA G +G L ++L++
Sbjct: 16 HIAIIGAAGMVGRKLTQRLVK--------------------------------------- 36
Query: 110 CPNYADKVDIGITHRVYNYFNDAVFDRMRLECP-NYADKVDIVCGQLEADTFGLSARDEE 168
+ + + D + E P ++ VD L + E+
Sbjct: 37 ----DGSLGGKPVEKF------TLIDVFQPEAPAGFSGAVDARAADL-SA----PGEAEK 81
Query: 169 LLISQTTIIFHIAA--TVRFDEHIRTAYNINVKGTQTILALAK----RMKGLKSFVHVST 222
L+ ++ +IFH+AA + + Y IN+ GT+ + + + V S+
Sbjct: 82 LVEARPDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSS 141
Query: 223 A 223
Sbjct: 142 I 142
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 366 | |||
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 99.97 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 99.97 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 99.97 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 99.97 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 99.96 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 99.96 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 99.96 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 99.96 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 99.96 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 99.96 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 99.96 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 99.96 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 99.96 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 99.96 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 99.96 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 99.96 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 99.96 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 99.96 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 99.96 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 99.95 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 99.95 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 99.95 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 99.95 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 99.95 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 99.95 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 99.95 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 99.95 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 99.95 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 99.95 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 99.95 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 99.95 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 99.95 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 99.95 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 99.95 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 99.94 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 99.94 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 99.94 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 99.94 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 99.94 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 99.94 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 99.94 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 99.94 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 99.94 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 99.94 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 99.94 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 99.94 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 99.94 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 99.94 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 99.93 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 99.93 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 99.93 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 99.93 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 99.93 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 99.93 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 99.93 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 99.93 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 99.93 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 99.93 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 99.93 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 99.93 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 99.92 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 99.92 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 99.92 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 99.92 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 99.92 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 99.92 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 99.91 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 99.91 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 99.91 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 99.91 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 99.9 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 99.9 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 99.9 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 99.9 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 99.89 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 99.89 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 99.89 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 99.87 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 99.87 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 99.87 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 99.86 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 99.85 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 99.84 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 99.84 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 99.83 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 99.83 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 99.83 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 99.83 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 99.82 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 99.82 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 99.82 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 99.82 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 99.82 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 99.82 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 99.82 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 99.81 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 99.81 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 99.81 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 99.81 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 99.81 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 99.81 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 99.81 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 99.8 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 99.8 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 99.8 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 99.8 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 99.8 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.8 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 99.8 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 99.8 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 99.8 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 99.79 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.79 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 99.79 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 99.79 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 99.79 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 99.79 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 99.79 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 99.79 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 99.79 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 99.79 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 99.79 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 99.79 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 99.79 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 99.79 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.79 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 99.78 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 99.78 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 99.78 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 99.78 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 99.78 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 99.78 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 99.78 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 99.78 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.78 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 99.78 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 99.78 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 99.78 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 99.78 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 99.78 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 99.78 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 99.78 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 99.78 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 99.78 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 99.78 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 99.77 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 99.77 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 99.77 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 99.77 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 99.77 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 99.77 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 99.77 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 99.77 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 99.77 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 99.77 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 99.77 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 99.77 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 99.77 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 99.77 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 99.77 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 99.77 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 99.77 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 99.77 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 99.77 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 99.77 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 99.76 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 99.76 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 99.76 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 99.76 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 99.76 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 99.76 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 99.76 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 99.76 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 99.76 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 99.76 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 99.76 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 99.76 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 99.76 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 99.76 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.76 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 99.76 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 99.76 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 99.76 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 99.76 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 99.76 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 99.76 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 99.76 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 99.76 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.76 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 99.76 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 99.76 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 99.75 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 99.75 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 99.75 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 99.75 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.75 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.75 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 99.75 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 99.75 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 99.75 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.75 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 99.75 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 99.75 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 99.75 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 99.75 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 99.75 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 99.75 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 99.75 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 99.75 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 99.75 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 99.75 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 99.75 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 99.75 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 99.75 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 99.75 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 99.75 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 99.75 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 99.74 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 99.74 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 99.74 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.74 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 99.74 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 99.74 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 99.74 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 99.74 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 99.74 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 99.74 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.74 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 99.74 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 99.74 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.73 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 99.73 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.73 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 99.73 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 99.73 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.73 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 99.73 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 99.73 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 99.73 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 99.73 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 99.73 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 99.73 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 99.73 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 99.73 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 99.73 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 99.72 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 99.72 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 99.72 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 99.72 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 99.72 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.72 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 99.72 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 99.72 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 99.71 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 99.71 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 99.71 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 99.71 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 99.71 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 99.71 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 99.71 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 99.71 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 99.7 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 99.7 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 99.7 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 99.7 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 99.69 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.69 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 99.69 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 99.69 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 99.69 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 99.69 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 99.68 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 99.68 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 99.68 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 99.68 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 99.68 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 99.67 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 99.67 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 99.66 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 99.65 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 99.65 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 99.65 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 99.64 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 99.64 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 99.64 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 99.64 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 99.62 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 99.62 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 99.6 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 99.6 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.6 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 99.59 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 99.58 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 99.58 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 99.56 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 99.56 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 99.55 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 99.55 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 99.54 | |
| 1d7o_A | 297 | Enoyl-[acyl-carrier protein] reductase (NADH) PRE; | 99.43 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 99.37 | |
| 2ptg_A | 319 | Enoyl-acyl carrier reductase; apicomplexa, enoyl ( | 99.26 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 99.25 | |
| 2o2s_A | 315 | Enoyl-acyl carrier reductase; enoyl reductase, tri | 99.23 | |
| 3lt0_A | 329 | Enoyl-ACP reductase; triclosan, triclosan variant, | 99.21 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.14 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 99.13 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 99.11 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 99.1 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 99.09 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.07 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 99.04 | |
| 4eue_A | 418 | Putative reductase CA_C0462; TER, biofuel, synthet | 98.98 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 98.86 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 98.58 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 98.52 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.45 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 98.42 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 98.37 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 98.24 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 98.14 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 98.1 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 97.98 | |
| 2gk4_A | 232 | Conserved hypothetical protein; alpha-beta-alpha s | 97.92 | |
| 4ggo_A | 401 | Trans-2-enoyl-COA reductase; rossmann fold, oxidor | 97.81 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 97.71 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 97.71 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 97.69 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 97.67 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 97.65 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 97.64 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 97.62 | |
| 1u7z_A | 226 | Coenzyme A biosynthesis bifunctional protein coabc | 97.59 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 97.54 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 97.49 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.46 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 97.01 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 96.91 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 96.82 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 96.79 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 96.77 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 96.71 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 96.69 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 96.66 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 96.47 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 96.47 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 96.42 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 96.32 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 96.31 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.26 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 96.21 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 96.17 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 96.11 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 96.1 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 96.09 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 96.03 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 96.02 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 95.99 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 95.99 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 95.93 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 95.91 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 95.89 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 95.84 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 95.82 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 95.82 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 95.79 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 95.77 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 95.72 | |
| 1p9o_A | 313 | Phosphopantothenoylcysteine synthetase; ligase; 2. | 95.7 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 95.7 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 95.7 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 95.69 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 95.61 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 95.45 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 95.42 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 95.33 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 95.28 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 95.26 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 95.2 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 95.14 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 95.14 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 95.12 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 95.0 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 95.0 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 94.93 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 94.93 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 94.89 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 94.89 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 94.88 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 94.87 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 94.77 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 94.75 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 94.65 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 94.56 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 94.53 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 94.51 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 94.47 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 94.45 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 94.43 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 94.35 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 94.28 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 94.25 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 94.15 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 94.01 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 93.98 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 93.95 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 93.82 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 93.82 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 93.81 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 93.79 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 93.64 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 93.63 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 93.5 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 93.49 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 93.47 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 93.32 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 93.29 | |
| 1y8q_B | 640 | Anthracycline-, ubiquitin-like 2 activating enzyme | 93.24 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 93.15 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 93.08 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 93.0 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 92.79 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 92.72 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 92.61 | |
| 3k5i_A | 403 | Phosphoribosyl-aminoimidazole carboxylase; purine | 92.55 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 92.53 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 92.5 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 92.48 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 92.44 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 92.42 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 92.39 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 92.38 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 92.1 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 92.09 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 91.96 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 91.86 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 91.86 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 91.85 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 91.76 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 91.74 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 91.7 | |
| 3uw3_A | 377 | Aspartate-semialdehyde dehydrogenase; structural g | 91.59 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 91.5 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 91.39 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 91.3 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 91.29 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 91.27 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 91.24 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 91.13 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 91.13 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 91.09 | |
| 3ax6_A | 380 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 90.74 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 90.71 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 90.7 | |
| 3cmm_A | 1015 | Ubiquitin-activating enzyme E1 1; UBA1, protein tu | 90.49 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 90.44 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 90.37 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 90.34 | |
| 2nvu_B | 805 | Maltose binding protein/NEDD8-activating enzyme E1 | 90.19 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 90.08 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 89.92 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 89.77 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 89.64 | |
| 3gxh_A | 157 | Putative phosphatase (DUF442); YP_001181608.1, str | 89.48 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 89.4 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 89.39 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 89.09 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 88.94 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 88.81 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 88.81 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 88.68 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 88.57 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 88.39 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 88.31 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 88.27 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 88.09 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 88.09 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 88.01 | |
| 1up7_A | 417 | 6-phospho-beta-glucosidase; hydrolase, family4 hyd | 87.95 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 87.86 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 87.78 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 87.77 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 87.74 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 87.46 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 87.36 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 87.32 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 87.27 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 87.26 | |
| 1tt5_B | 434 | Ubiquitin-activating enzyme E1C isoform 1; cell cy | 87.26 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 87.1 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 87.05 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 86.95 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 86.94 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 86.85 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 86.5 | |
| 1tt5_A | 531 | APPBP1, amyloid protein-binding protein 1; cell cy | 86.47 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 86.35 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 86.35 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 86.22 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 86.11 |
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.1e-30 Score=246.22 Aligned_cols=232 Identities=22% Similarity=0.170 Sum_probs=182.8
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++|||||||||||++|+++|++.| ++|++++|+..... ..+..+ ...
T Consensus 23 ~~~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~--~~~~~~---------~~~---------------- 72 (351)
T 3ruf_A 23 FSPKTWLITGVAGFIGSNLLEKLLKLN---QVVIGLDNFSTGHQ--YNLDEV---------KTL---------------- 72 (351)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCSSCCH--HHHHHH---------HHT----------------
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCCCCch--hhhhhh---------hhc----------------
Confidence 467999999999999999999999998 89999999765321 111111 000
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh---hhHHHHHHHHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD---EHIRTAYNINVKGTQ 202 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~---~~~~~~~~~nv~~~~ 202 (366)
+ ......++.++.+|+.+.+ .+..+++++|+|||+|+..... .++...+++|+.++.
T Consensus 73 ---~-----------~~~~~~~~~~~~~Dl~d~~------~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~ 132 (351)
T 3ruf_A 73 ---V-----------STEQWSRFCFIEGDIRDLT------TCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFL 132 (351)
T ss_dssp ---S-----------CHHHHTTEEEEECCTTCHH------HHHHHTTTCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHH
T ss_pred ---c-----------ccccCCceEEEEccCCCHH------HHHHHhcCCCEEEECCccCCcchhhhCHHHHHHHHHHHHH
Confidence 0 0000157899999999977 8889999999999999975433 345678899999999
Q ss_pred HHHHHHHhcCCCcEEEEeeCcceecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHH
Q psy17528 203 TILALAKRMKGLKSFVHVSTAYCNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATA 280 (366)
Q Consensus 203 ~ll~~a~~~~~~~~~v~iSS~~~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~ 280 (366)
++++++.+. ++++|||+||+++|+... +++|+....|. +.|+.+|+.+
T Consensus 133 ~ll~a~~~~-~~~~~v~~SS~~vyg~~~~~~~~E~~~~~p~-----------------------------~~Y~~sK~~~ 182 (351)
T 3ruf_A 133 NILHAAKNA-QVQSFTYAASSSTYGDHPALPKVEENIGNPL-----------------------------SPYAVTKYVN 182 (351)
T ss_dssp HHHHHHHHT-TCSEEEEEEEGGGGTTCCCSSBCTTCCCCCC-----------------------------SHHHHHHHHH
T ss_pred HHHHHHHHc-CCCEEEEEecHHhcCCCCCCCCccCCCCCCC-----------------------------ChhHHHHHHH
Confidence 999999987 789999999999886533 56666544443 8899999999
Q ss_pred HHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHH
Q psy17528 281 EDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALA 358 (366)
Q Consensus 281 E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~ 358 (366)
|++++.+. .+++++++||++|||++..+...+. ..+..++..+..+....++++++..++|+|++|+|++++.++
T Consensus 183 E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~ 259 (351)
T 3ruf_A 183 EIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYA---AVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNILSA 259 (351)
T ss_dssp HHHHHHHHHHHCCCCEEEEECSEESTTCCCCSTTC---CHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEeeCceeCcCCCCCcchh---hHHHHHHHHHHcCCCcEEeCCCCeEEeeEEHHHHHHHHHHHH
Confidence 99998876 6899999999999999876532221 123556777778888888888999999999999999999998
Q ss_pred Hh
Q psy17528 359 WY 360 (366)
Q Consensus 359 ~~ 360 (366)
..
T Consensus 260 ~~ 261 (351)
T 3ruf_A 260 LA 261 (351)
T ss_dssp TC
T ss_pred hh
Confidence 87
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=247.03 Aligned_cols=235 Identities=14% Similarity=0.116 Sum_probs=180.6
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHh-CCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRC-CPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGIT 122 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~-g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (366)
..|++|+|||||||||||++|+++|++. | ++|++++|+.+... .+.
T Consensus 20 ~~m~~~~vlVtGatG~iG~~l~~~L~~~~g---~~V~~~~r~~~~~~---------------~~~--------------- 66 (372)
T 3slg_A 20 GSMKAKKVLILGVNGFIGHHLSKRILETTD---WEVFGMDMQTDRLG---------------DLV--------------- 66 (372)
T ss_dssp ---CCCEEEEESCSSHHHHHHHHHHHHHSS---CEEEEEESCCTTTG---------------GGG---------------
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHhCCC---CEEEEEeCChhhhh---------------hhc---------------
Confidence 3456899999999999999999999999 7 89999999864321 000
Q ss_pred cccccccchhhhhhccccCCCCCCcEEEEeccCC-cCCCCCCHHHHHHHHhCcCEEEEcCcccChh---hhHHHHHHHHH
Q psy17528 123 HRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLE-ADTFGLSARDEELLISQTTIIFHIAATVRFD---EHIRTAYNINV 198 (366)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~-~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~---~~~~~~~~~nv 198 (366)
...++.++.+|+. +.+ .+.++++++|+|||+|+..... .+....+++|+
T Consensus 67 ---------------------~~~~v~~~~~Dl~~d~~------~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv 119 (372)
T 3slg_A 67 ---------------------KHERMHFFEGDITINKE------WVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDF 119 (372)
T ss_dssp ---------------------GSTTEEEEECCTTTCHH------HHHHHHHHCSEEEECBCCCCHHHHHHCHHHHHHHHT
T ss_pred ---------------------cCCCeEEEeCccCCCHH------HHHHHhccCCEEEEcCccccHHHHhhCHHHHHHHHH
Confidence 1258999999999 766 7888889999999999986543 35667889999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeeCcceecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHH
Q psy17528 199 KGTQTILALAKRMKGLKSFVHVSTAYCNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLT 276 (366)
Q Consensus 199 ~~~~~ll~~a~~~~~~~~~v~iSS~~~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~s 276 (366)
.++.++++++.+. + ++|||+||.++|+... ++.|...+.+..+ .....+.|+.+
T Consensus 120 ~~~~~ll~a~~~~-~-~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~p----------------------~~~p~~~Y~~s 175 (372)
T 3slg_A 120 EANLPIVRSAVKY-G-KHLVFPSTSEVYGMCADEQFDPDASALTYGP----------------------INKPRWIYACS 175 (372)
T ss_dssp TTTHHHHHHHHHH-T-CEEEEECCGGGGBSCCCSSBCTTTCCEEECC----------------------TTCTTHHHHHH
T ss_pred HHHHHHHHHHHHh-C-CcEEEeCcHHHhCCCCCCCCCccccccccCC----------------------CCCCCCcHHHH
Confidence 9999999999987 5 8999999998887532 4445443311100 00112689999
Q ss_pred HHHHHHHHHHhc-CCCCEEEEecCccccCCCCCCCccccccc-hHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHH
Q psy17528 277 KATAEDLVRQVG-HELPICVLRPSIVFPTLQEPMPLWIKGFN-GVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAM 354 (366)
Q Consensus 277 K~~~E~~l~~~~-~gl~~~ilRp~~v~G~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai 354 (366)
|+.+|++++.+. .+++++++||++||||+..+......... .+..++.....+....++++++..++|+|++|+|+++
T Consensus 176 K~~~E~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~ 255 (372)
T 3slg_A 176 KQLMDRVIWGYGMEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDGGSQKRAFTYVDDGISAL 255 (372)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEECSEECSSCCCTTCSBSCSCHHHHHHHHHHHHTCCEEEGGGGCCEEECEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEEccccccCCCcccccccccccchHHHHHHHHHHcCCCcEEeCCCceEEEEEEHHHHHHHH
Confidence 999999999987 58999999999999998764222111111 2355677777888888888889999999999999999
Q ss_pred HHHHHhhh
Q psy17528 355 AALAWYFL 362 (366)
Q Consensus 355 ~~~~~~~~ 362 (366)
+.+++.+.
T Consensus 256 ~~~~~~~~ 263 (372)
T 3slg_A 256 MKIIENSN 263 (372)
T ss_dssp HHHHHCGG
T ss_pred HHHHhccc
Confidence 99998874
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-29 Score=241.85 Aligned_cols=227 Identities=23% Similarity=0.197 Sum_probs=177.3
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|+|||||||||||++|+++|++.|+. .+|++++|....... + .+.
T Consensus 22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~-~~v~~~~~~~~~~~~-~------------~l~------------------ 69 (346)
T 4egb_A 22 SNAMNILVTGGAGFIGSNFVHYMLQSYET-YKIINFDALTYSGNL-N------------NVK------------------ 69 (346)
T ss_dssp --CEEEEEETTTSHHHHHHHHHHHHHCTT-EEEEEEECCCTTCCG-G------------GGT------------------
T ss_pred cCCCeEEEECCccHHHHHHHHHHHhhCCC-cEEEEEeccccccch-h------------hhh------------------
Confidence 45789999999999999999999999843 578888886532210 0 000
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhC--cCEEEEcCcccChh---hhHHHHHHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQ--TTIIFHIAATVRFD---EHIRTAYNINVKG 200 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~--~d~Vih~a~~~~~~---~~~~~~~~~nv~~ 200 (366)
......++.++.+|+.+.+ .+..++++ +|+|||+|+..... .++...+++|+.+
T Consensus 70 ---------------~~~~~~~~~~~~~Dl~d~~------~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~ 128 (346)
T 4egb_A 70 ---------------SIQDHPNYYFVKGEIQNGE------LLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIG 128 (346)
T ss_dssp ---------------TTTTCTTEEEEECCTTCHH------HHHHHHHHHTCCEEEECCCCC---------CHHHHHHTHH
T ss_pred ---------------hhccCCCeEEEEcCCCCHH------HHHHHHhhcCCCEEEECCcccchhhhhhCHHHHHHHHHHH
Confidence 1111358999999999987 78888876 99999999976533 4556788999999
Q ss_pred HHHHHHHHHhcCCCcEEEEeeCcceecCc---cccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHH
Q psy17528 201 TQTILALAKRMKGLKSFVHVSTAYCNCDR---KFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTK 277 (366)
Q Consensus 201 ~~~ll~~a~~~~~~~~~v~iSS~~~~~~~---~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK 277 (366)
+.++++++.+. ++++|||+||.++|+.. .++.|+....|. +.|+.+|
T Consensus 129 ~~~ll~a~~~~-~~~~~v~~SS~~vy~~~~~~~~~~E~~~~~p~-----------------------------~~Y~~sK 178 (346)
T 4egb_A 129 TVTLLELVKKY-PHIKLVQVSTDEVYGSLGKTGRFTEETPLAPN-----------------------------SPYSSSK 178 (346)
T ss_dssp HHHHHHHHHHS-TTSEEEEEEEGGGGCCCCSSCCBCTTSCCCCC-----------------------------SHHHHHH
T ss_pred HHHHHHHHHhc-CCCEEEEeCchHHhCCCCcCCCcCCCCCCCCC-----------------------------ChhHHHH
Confidence 99999999987 78999999999988754 356666544443 7899999
Q ss_pred HHHHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHH
Q psy17528 278 ATAEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMA 355 (366)
Q Consensus 278 ~~~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~ 355 (366)
+.+|.+++.+. .+++++++||++||||+..+. ..+..++.....+....++++++..++|+|++|+|++++
T Consensus 179 ~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~ 251 (346)
T 4egb_A 179 ASADMIALAYYKTYQLPVIVTRCSNNYGPYQYPE-------KLIPLMVTNALEGKKLPLYGDGLNVRDWLHVTDHCSAID 251 (346)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTT-------SHHHHHHHHHHTTCCCEEETTSCCEECEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEeecceeCcCCCcc-------chHHHHHHHHHcCCCceeeCCCCeEEeeEEHHHHHHHHH
Confidence 99999999876 589999999999999987532 123556777788888888888999999999999999999
Q ss_pred HHHHhhh
Q psy17528 356 ALAWYFL 362 (366)
Q Consensus 356 ~~~~~~~ 362 (366)
.+++.+.
T Consensus 252 ~~~~~~~ 258 (346)
T 4egb_A 252 VVLHKGR 258 (346)
T ss_dssp HHHHHCC
T ss_pred HHHhcCC
Confidence 9998765
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-29 Score=239.57 Aligned_cols=212 Identities=18% Similarity=0.114 Sum_probs=175.6
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+|+|||||||||||++++++|++.| ++|++++|+....
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~--------------------------------------- 39 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDG---NTPIILTRSIGNK--------------------------------------- 39 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCCC-----------------------------------------
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCC---CEEEEEeCCCCcc---------------------------------------
Confidence 4799999999999999999999998 8999999983210
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILAL 207 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll~~ 207 (366)
. ..++.++.+|+. .+ .+.++++++|+|||+|+..... ++...+++|+.++.+++++
T Consensus 40 --------------~--~~~~~~~~~Dl~-~~------~~~~~~~~~d~Vih~a~~~~~~-~~~~~~~~n~~~~~~ll~a 95 (311)
T 3m2p_A 40 --------------A--INDYEYRVSDYT-LE------DLINQLNDVDAVVHLAATRGSQ-GKISEFHDNEILTQNLYDA 95 (311)
T ss_dssp -------------------CCEEEECCCC-HH------HHHHHTTTCSEEEECCCCCCSS-SCGGGTHHHHHHHHHHHHH
T ss_pred --------------c--CCceEEEEcccc-HH------HHHHhhcCCCEEEEccccCCCC-ChHHHHHHHHHHHHHHHHH
Confidence 0 137789999999 76 7889999999999999986544 5566788999999999999
Q ss_pred HHhcCCCcEEEEeeCcceecCc--cccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHH
Q psy17528 208 AKRMKGLKSFVHVSTAYCNCDR--KFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVR 285 (366)
Q Consensus 208 a~~~~~~~~~v~iSS~~~~~~~--~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~ 285 (366)
+.+. ++++|||+||.++|+.. .++.|+..+.|. +.|+.+|+.+|++++
T Consensus 96 ~~~~-~~~r~v~~SS~~vyg~~~~~~~~E~~~~~p~-----------------------------~~Y~~sK~~~E~~~~ 145 (311)
T 3m2p_A 96 CYEN-NISNIVYASTISAYSDETSLPWNEKELPLPD-----------------------------LMYGVSKLACEHIGN 145 (311)
T ss_dssp HHHT-TCCEEEEEEEGGGCCCGGGCSBCTTSCCCCS-----------------------------SHHHHHHHHHHHHHH
T ss_pred HHHc-CCCEEEEEccHHHhCCCCCCCCCCCCCCCCC-----------------------------chhHHHHHHHHHHHH
Confidence 9987 78999999999988754 356666544443 889999999999999
Q ss_pred Hhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 286 QVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 286 ~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
.+. .+++++++||++|||+...+. ..+..++.....+....++++++..++|+|++|+|++++.+++.+.
T Consensus 146 ~~~~~~g~~~~ilRp~~v~G~~~~~~-------~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~v~Dva~a~~~~~~~~~ 217 (311)
T 3m2p_A 146 IYSRKKGLCIKNLRFAHLYGFNEKNN-------YMINRFFRQAFHGEQLTLHANSVAKREFLYAKDAAKSVIYALKQEK 217 (311)
T ss_dssp HHHHHSCCEEEEEEECEEECSCC--C-------CHHHHHHHHHHTCCCEEESSBCCCCEEEEEHHHHHHHHHHHTTCTT
T ss_pred HHHHHcCCCEEEEeeCceeCcCCCCC-------CHHHHHHHHHHcCCCeEEecCCCeEEceEEHHHHHHHHHHHHhcCC
Confidence 877 699999999999999987532 1235567777788888888888999999999999999999998764
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=240.09 Aligned_cols=236 Identities=20% Similarity=0.086 Sum_probs=179.7
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHH--hCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLR--CCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGIT 122 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~--~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (366)
.+++|+|||||||||||++++++|++ .| ++|++++|+........+..+ .+..
T Consensus 7 ~~~~~~vlVTGatG~IG~~l~~~L~~~~~g---~~V~~~~r~~~~~~~~~~~~~--------~~~~-------------- 61 (362)
T 3sxp_A 7 ELENQTILITGGAGFVGSNLAFHFQENHPK---AKVVVLDKFRSNTLFSNNRPS--------SLGH-------------- 61 (362)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHCTT---SEEEEEECCCCC-------CC--------CCCC--------------
T ss_pred hcCCCEEEEECCCCHHHHHHHHHHHhhCCC---CeEEEEECCCccccccccchh--------hhhh--------------
Confidence 35689999999999999999999999 77 899999997652111000000 0000
Q ss_pred cccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHH-HhCcCEEEEcCcccCh-hhhHHHHHHHHHHH
Q psy17528 123 HRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELL-ISQTTIIFHIAATVRF-DEHIRTAYNINVKG 200 (366)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~-~~~~d~Vih~a~~~~~-~~~~~~~~~~nv~~ 200 (366)
.......++.++.+|+.+.+ .+..+ ..++|+|||+||.... ...+...+++|+.+
T Consensus 62 -----------------~~~~~~~~~~~~~~Dl~d~~------~~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~g 118 (362)
T 3sxp_A 62 -----------------FKNLIGFKGEVIAADINNPL------DLRRLEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQA 118 (362)
T ss_dssp -----------------GGGGTTCCSEEEECCTTCHH------HHHHHTTSCCSEEEECCCCCGGGCCCHHHHHHHHTHH
T ss_pred -----------------hhhccccCceEEECCCCCHH------HHHHhhccCCCEEEECCccCCccccCHHHHHHHHHHH
Confidence 00111346789999999987 77787 6799999999997653 35678899999999
Q ss_pred HHHHHHHHHhcCCCcEEEEeeCcceecCcc-ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHH
Q psy17528 201 TQTILALAKRMKGLKSFVHVSTAYCNCDRK-FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKAT 279 (366)
Q Consensus 201 ~~~ll~~a~~~~~~~~~v~iSS~~~~~~~~-~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~ 279 (366)
+.++++++++. +++ |||+||+++|+... ++.|+....|. +.|+.+|..
T Consensus 119 t~~ll~aa~~~-~~~-~V~~SS~~vyg~~~~~~~E~~~~~p~-----------------------------~~Y~~sK~~ 167 (362)
T 3sxp_A 119 FLNLLEIARSK-KAK-VIYASSAGVYGNTKAPNVVGKNESPE-----------------------------NVYGFSKLC 167 (362)
T ss_dssp HHHHHHHHHHT-TCE-EEEEEEGGGGCSCCSSBCTTSCCCCS-----------------------------SHHHHHHHH
T ss_pred HHHHHHHHHHc-CCc-EEEeCcHHHhCCCCCCCCCCCCCCCC-----------------------------ChhHHHHHH
Confidence 99999999886 666 99999998887533 55665544443 889999999
Q ss_pred HHHHHHHhcCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHH
Q psy17528 280 AEDLVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAW 359 (366)
Q Consensus 280 ~E~~l~~~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~ 359 (366)
+|.+++.+...++++++||++||||+..+...+ ...+..++.....+....++++++..++|+|++|+|++++.+++
T Consensus 168 ~E~~~~~~~~~~~~~~lR~~~v~Gp~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~ai~~~~~ 244 (362)
T 3sxp_A 168 MDEFVLSHSNDNVQVGLRYFNVYGPREFYKEKT---ASMVLQLALGAMAFKEVKLFEFGEQLRDFVYIEDVIQANVKAMK 244 (362)
T ss_dssp HHHHHHHTTTTSCEEEEEECSEESTTCGGGGGG---SCHHHHHHHHHHTTSEEECSGGGCCEEECEEHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccCCEEEEEeCceeCcCCCCCCcc---hhHHHHHHHHHHhCCCeEEECCCCeEEccEEHHHHHHHHHHHHh
Confidence 999999988449999999999999987542211 12235667777888888887888899999999999999999987
Q ss_pred hhh
Q psy17528 360 YFL 362 (366)
Q Consensus 360 ~~~ 362 (366)
.+.
T Consensus 245 ~~~ 247 (362)
T 3sxp_A 245 AQK 247 (362)
T ss_dssp CSS
T ss_pred cCC
Confidence 653
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-29 Score=240.67 Aligned_cols=223 Identities=18% Similarity=0.149 Sum_probs=173.6
Q ss_pred cccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccc
Q psy17528 43 QEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGIT 122 (366)
Q Consensus 43 ~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (366)
+...++|+|||||||||||++|+++|++.| ++|++++|+...
T Consensus 14 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~G---~~V~~~~r~~~~----------------------------------- 55 (347)
T 4id9_A 14 LVPRGSHMILVTGSAGRVGRAVVAALRTQG---RTVRGFDLRPSG----------------------------------- 55 (347)
T ss_dssp -------CEEEETTTSHHHHHHHHHHHHTT---CCEEEEESSCCS-----------------------------------
T ss_pred ccccCCCEEEEECCCChHHHHHHHHHHhCC---CEEEEEeCCCCC-----------------------------------
Confidence 344567899999999999999999999998 889999997531
Q ss_pred cccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh-hhHHHHHHHHHHHH
Q psy17528 123 HRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD-EHIRTAYNINVKGT 201 (366)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~-~~~~~~~~~nv~~~ 201 (366)
.++.++.+|+.+.+ .+..++.++|+|||+|+..... ......+++|+.++
T Consensus 56 -----------------------~~~~~~~~Dl~d~~------~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~nv~~~ 106 (347)
T 4id9_A 56 -----------------------TGGEEVVGSLEDGQ------ALSDAIMGVSAVLHLGAFMSWAPADRDRMFAVNVEGT 106 (347)
T ss_dssp -----------------------SCCSEEESCTTCHH------HHHHHHTTCSEEEECCCCCCSSGGGHHHHHHHHTHHH
T ss_pred -----------------------CCccEEecCcCCHH------HHHHHHhCCCEEEECCcccCcchhhHHHHHHHHHHHH
Confidence 35678999999977 7889999999999999976543 34478999999999
Q ss_pred HHHHHHHHhcCCCcEEEEeeCcceecCc----cccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHH
Q psy17528 202 QTILALAKRMKGLKSFVHVSTAYCNCDR----KFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTK 277 (366)
Q Consensus 202 ~~ll~~a~~~~~~~~~v~iSS~~~~~~~----~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK 277 (366)
.++++++.+. ++++|||+||+++|+.. .++.|.....|. +.|+.+|
T Consensus 107 ~~ll~a~~~~-~~~~~V~~SS~~vyg~~~~~~~~~~E~~~~~~~-----------------------------~~Y~~sK 156 (347)
T 4id9_A 107 RRLLDAASAA-GVRRFVFASSGEVYPENRPEFLPVTEDHPLCPN-----------------------------SPYGLTK 156 (347)
T ss_dssp HHHHHHHHHT-TCSEEEEEEEGGGTTTTSCSSSSBCTTSCCCCC-----------------------------SHHHHHH
T ss_pred HHHHHHHHHc-CCCeEEEECCHHHhCCCCCCCCCcCCCCCCCCC-----------------------------ChHHHHH
Confidence 9999999986 78999999999998752 245555444332 8899999
Q ss_pred HHHHHHHHHhc--CCCCEEEEecCccc-------------cCCCCCCCcccc----ccchHHHHHHHHhcCcceeecCCC
Q psy17528 278 ATAEDLVRQVG--HELPICVLRPSIVF-------------PTLQEPMPLWIK----GFNGVMALALGAGTGLIRVVQTDP 338 (366)
Q Consensus 278 ~~~E~~l~~~~--~gl~~~ilRp~~v~-------------G~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~l~~~~ 338 (366)
..+|++++.+. .+++++++||++|| ||+..+...+.. ....+..++.....+.+..+++++
T Consensus 157 ~~~E~~~~~~~~~~~~~~~ilRp~~v~~~~~~~~~~~~~~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 236 (347)
T 4id9_A 157 LLGEELVRFHQRSGAMETVILRFSHTQDATELLDEDSFFSGPRFFLRPRIHQQQNFGNAAIAELLQSRDIGEPSHILARN 236 (347)
T ss_dssp HHHHHHHHHHHHHSSSEEEEEEECEEECGGGTTCTTSSSHHHHHBHHHHHHHHHHHTCHHHHHHHHHHCCSSCCEEEEEC
T ss_pred HHHHHHHHHHHHhcCCceEEEccceEeecccccccccccCCCCcccccccccccccchhHHHHHHHHHHcCCCeEEeCCC
Confidence 99999999876 78999999999999 665321100000 011234566677788887788888
Q ss_pred CcccCc----ccHHHHHHHHHHHHHhhh
Q psy17528 339 NISMDV----VPGDRVINAMAALAWYFL 362 (366)
Q Consensus 339 ~~~~~~----v~vdDva~ai~~~~~~~~ 362 (366)
+..++| +|++|+|++++.+++.+.
T Consensus 237 ~~~~~~~~~~i~v~Dva~ai~~~~~~~~ 264 (347)
T 4id9_A 237 ENGRPFRMHITDTRDMVAGILLALDHPE 264 (347)
T ss_dssp TTCCBCEECEEEHHHHHHHHHHHHHCGG
T ss_pred CcccCCccCcEeHHHHHHHHHHHhcCcc
Confidence 889999 999999999999999874
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-27 Score=229.09 Aligned_cols=230 Identities=19% Similarity=0.141 Sum_probs=172.6
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHH-HHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSIT-QRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
++|+|||||||||||++++++|++.| ++|++++|+....... +++...
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G---~~V~~~~r~~~~~~~~~~~~~~~---------------------------- 52 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHG---YDVVIADNLVNSKREAIARIEKI---------------------------- 52 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTT---CEEEEECCCSSSCTHHHHHHHHH----------------------------
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCC---CcEEEEecCCcchHHHHHHHHhh----------------------------
Confidence 36799999999999999999999998 8999999976543221 111110
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccChh---hhHHHHHHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRFD---EHIRTAYNINVKG 200 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~~---~~~~~~~~~nv~~ 200 (366)
...++.++.+|+.+.+ .+..+++ ++|+|||+||..... ....+.++.|+.+
T Consensus 53 ------------------~~~~~~~~~~Dl~d~~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~ 108 (341)
T 3enk_A 53 ------------------TGKTPAFHETDVSDER------ALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDS 108 (341)
T ss_dssp ------------------HSCCCEEECCCTTCHH------HHHHHHHHSCCCEEEECCCCCCHHHHHHCHHHHHHHHHHH
T ss_pred ------------------cCCCceEEEeecCCHH------HHHHHHhccCCcEEEECccccccCccccChHHHHHHHHHH
Confidence 0246789999999987 7888887 899999999986532 3445788999999
Q ss_pred HHHHHHHHHhcCCCcEEEEeeCcceecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHH
Q psy17528 201 TQTILALAKRMKGLKSFVHVSTAYCNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKA 278 (366)
Q Consensus 201 ~~~ll~~a~~~~~~~~~v~iSS~~~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~ 278 (366)
+.++++++++. ++++||++||+.+|+... +++|.....|. +.|+.+|.
T Consensus 109 ~~~l~~~~~~~-~~~~iv~~SS~~~~g~~~~~~~~e~~~~~~~-----------------------------~~Y~~sK~ 158 (341)
T 3enk_A 109 LLSLLRVMRER-AVKRIVFSSSATVYGVPERSPIDETFPLSAT-----------------------------NPYGQTKL 158 (341)
T ss_dssp HHHHHHHHHHT-TCCEEEEEEEGGGBCSCSSSSBCTTSCCBCS-----------------------------SHHHHHHH
T ss_pred HHHHHHHHHhC-CCCEEEEEecceEecCCCCCCCCCCCCCCCC-----------------------------ChhHHHHH
Confidence 99999999986 788999999998886533 45555444332 78999999
Q ss_pred HHHHHHHHhc--C-CCCEEEEecCccccCCCCCCCcccc-c-cchHHHHHHHHhcC--cceeecC------CCCcccCcc
Q psy17528 279 TAEDLVRQVG--H-ELPICVLRPSIVFPTLQEPMPLWIK-G-FNGVMALALGAGTG--LIRVVQT------DPNISMDVV 345 (366)
Q Consensus 279 ~~E~~l~~~~--~-gl~~~ilRp~~v~G~~~~~~~~~~~-~-~~~~~~~~~~~~~g--~~~~l~~------~~~~~~~~v 345 (366)
.+|.+++.+. . +++++++||++||||......+... . ...+..++.....+ ....+++ +++..++|+
T Consensus 159 ~~e~~~~~~~~~~~~~~~~~lRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i 238 (341)
T 3enk_A 159 MAEQILRDVEAADPSWRVATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGVRDYI 238 (341)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCSSHHHHHHHHHHTSSSCEEEECSCSSSTTSSCEECEE
T ss_pred HHHHHHHHHhhcCCCceEEEEeeccccCCccccccCCCcccCccchHHHHHHHHhcCCCceEEeCCccCCCCCCeeEeeE
Confidence 9999998876 3 5999999999999996532211111 0 11233344444433 3444555 788999999
Q ss_pred cHHHHHHHHHHHHHhh
Q psy17528 346 PGDRVINAMAALAWYF 361 (366)
Q Consensus 346 ~vdDva~ai~~~~~~~ 361 (366)
|++|+|++++.+++.+
T Consensus 239 ~v~Dva~a~~~~~~~~ 254 (341)
T 3enk_A 239 HVVDLARGHIAALDAL 254 (341)
T ss_dssp EHHHHHHHHHHHHHHH
T ss_pred EHHHHHHHHHHHHHhh
Confidence 9999999999999873
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-28 Score=230.88 Aligned_cols=212 Identities=18% Similarity=0.187 Sum_probs=165.7
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
||+|||||||||||++|+++|++.| +.|.+..|+....
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g---~~v~~~~~~~~~~--------------------------------------- 38 (313)
T 3ehe_A 1 MSLIVVTGGAGFIGSHVVDKLSESN---EIVVIDNLSSGNE--------------------------------------- 38 (313)
T ss_dssp --CEEEETTTSHHHHHHHHHHTTTS---CEEEECCCSSCCG---------------------------------------
T ss_pred CCEEEEECCCchHHHHHHHHHHhCC---CEEEEEcCCCCCh---------------------------------------
Confidence 4689999999999999999999997 5554444433211
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccC---hhhhHHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVR---FDEHIRTAYNINVKGTQTI 204 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~---~~~~~~~~~~~nv~~~~~l 204 (366)
......+.++.+|+.+ + .+.++++++|+|||+|+... ....+...+++|+.++.++
T Consensus 39 --------------~~~~~~~~~~~~Dl~~-~------~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l 97 (313)
T 3ehe_A 39 --------------EFVNEAARLVKADLAA-D------DIKDYLKGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRL 97 (313)
T ss_dssp --------------GGSCTTEEEECCCTTT-S------CCHHHHTTCSEEEECCCCCCCC-CCCCHHHHHHHHHHHHHHH
T ss_pred --------------hhcCCCcEEEECcCCh-H------HHHHHhcCCCEEEECCCCCChhhhhhCHHHHHHHHHHHHHHH
Confidence 0113578899999998 5 57888899999999999643 2346778899999999999
Q ss_pred HHHHHhcCCCcEEEEeeCcceecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHH
Q psy17528 205 LALAKRMKGLKSFVHVSTAYCNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAED 282 (366)
Q Consensus 205 l~~a~~~~~~~~~v~iSS~~~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~ 282 (366)
++++.+. ++++|||+||..+|+... +++|+....|. +.|+.+|..+|.
T Consensus 98 ~~~~~~~-~~~~iv~~SS~~vyg~~~~~~~~E~~~~~~~-----------------------------~~Y~~sK~~~e~ 147 (313)
T 3ehe_A 98 LEAMRKA-GVSRIVFTSTSTVYGEAKVIPTPEDYPTHPI-----------------------------SLYGASKLACEA 147 (313)
T ss_dssp HHHHHHH-TCCEEEEECCGGGGCSCSSSSBCTTSCCCCC-----------------------------SHHHHHHHHHHH
T ss_pred HHHHHHc-CCCeEEEeCchHHhCcCCCCCCCCCCCCCCC-----------------------------CHHHHHHHHHHH
Confidence 9999887 788999999998887533 45555433332 789999999999
Q ss_pred HHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcC-cceeecCCCCcccCcccHHHHHHHHHHHHH
Q psy17528 283 LVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTG-LIRVVQTDPNISMDVVPGDRVINAMAALAW 359 (366)
Q Consensus 283 ~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~l~~~~~~~~~~v~vdDva~ai~~~~~ 359 (366)
+++.+. .+++++++||++||||+..+ . .+..++.....+ ....++++++..++|+|++|+|++++.+++
T Consensus 148 ~~~~~~~~~g~~~~ilRp~~v~G~~~~~--~------~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~ 219 (313)
T 3ehe_A 148 LIESYCHTFDMQAWIYRFANVIGRRSTH--G------VIYDFIMKLKRNPEELEILGNGEQNKSYIYISDCVDAMLFGLR 219 (313)
T ss_dssp HHHHHHHHTTCEEEEEECSCEESTTCCC--S------HHHHHHHHHHHCTTEEEESTTSCCEECCEEHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCEEEEeeccccCcCCCc--C------hHHHHHHHHHcCCCceEEeCCCCeEEeEEEHHHHHHHHHHHhc
Confidence 999877 79999999999999997653 1 124455666655 455678888999999999999999999987
Q ss_pred h
Q psy17528 360 Y 360 (366)
Q Consensus 360 ~ 360 (366)
.
T Consensus 220 ~ 220 (313)
T 3ehe_A 220 G 220 (313)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=232.17 Aligned_cols=232 Identities=19% Similarity=0.142 Sum_probs=177.9
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++|||||||||||++++++|++.| ++|++++|+.... .+++.+... .+..
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~--~~~~~~~~~-----~~~~----------------- 77 (352)
T 1sb8_A 25 AQPKVWLITGVAGFIGSNLLETLLKLD---QKVVGLDNFATGH--QRNLDEVRS-----LVSE----------------- 77 (352)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCSSCC--HHHHHHHHH-----HSCH-----------------
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCCccc--hhhHHHHhh-----hccc-----------------
Confidence 567899999999999999999999998 8999999975421 112211100 0000
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh---hhHHHHHHHHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD---EHIRTAYNINVKGTQ 202 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~---~~~~~~~~~nv~~~~ 202 (366)
....++.++.+|+.+.+ .+..+++++|+|||+||..... .++...+++|+.++.
T Consensus 78 -----------------~~~~~~~~~~~Dl~d~~------~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~ 134 (352)
T 1sb8_A 78 -----------------KQWSNFKFIQGDIRNLD------DCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFL 134 (352)
T ss_dssp -----------------HHHTTEEEEECCTTSHH------HHHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHH
T ss_pred -----------------ccCCceEEEECCCCCHH------HHHHHhcCCCEEEECCcccCchhhhhCHHHHHHHHHHHHH
Confidence 00147889999999876 7888899999999999976532 456778899999999
Q ss_pred HHHHHHHhcCCCcEEEEeeCcceecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHH
Q psy17528 203 TILALAKRMKGLKSFVHVSTAYCNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATA 280 (366)
Q Consensus 203 ~ll~~a~~~~~~~~~v~iSS~~~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~ 280 (366)
++++++.+. ++++||++||.++|+... ++.|+..+.|. +.|+.+|+.+
T Consensus 135 ~l~~a~~~~-~~~~~v~~SS~~~~~~~~~~~~~E~~~~~~~-----------------------------~~Y~~sK~~~ 184 (352)
T 1sb8_A 135 NMLIAARDA-KVQSFTYAASSSTYGDHPGLPKVEDTIGKPL-----------------------------SPYAVTKYVN 184 (352)
T ss_dssp HHHHHHHHT-TCSEEEEEEEGGGGTTCCCSSBCTTCCCCCC-----------------------------SHHHHHHHHH
T ss_pred HHHHHHHHc-CCCEEEEeccHHhcCCCCCCCCCCCCCCCCC-----------------------------ChhHHHHHHH
Confidence 999999986 789999999999887542 45555444332 7899999999
Q ss_pred HHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHH
Q psy17528 281 EDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALA 358 (366)
Q Consensus 281 E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~ 358 (366)
|.+++.+. .+++++++||++|||+...+...+. ..+..++..+..+.+..++++++..++|+|++|+|++++.++
T Consensus 185 e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~ 261 (352)
T 1sb8_A 185 ELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYA---AVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLAA 261 (352)
T ss_dssp HHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTC---CHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEECceeCcCCCCCcchh---hHHHHHHHHHHCCCCcEEeCCCCceEeeEEHHHHHHHHHHHH
Confidence 99998775 5899999999999999865421111 112445566667777777788889999999999999999888
Q ss_pred Hh
Q psy17528 359 WY 360 (366)
Q Consensus 359 ~~ 360 (366)
..
T Consensus 262 ~~ 263 (352)
T 1sb8_A 262 TA 263 (352)
T ss_dssp TC
T ss_pred hc
Confidence 76
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-27 Score=226.44 Aligned_cols=224 Identities=18% Similarity=0.161 Sum_probs=168.5
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
||+|||||||||||++++++|++.| ++|++++|......
T Consensus 1 M~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~-------------------------------------- 39 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDEG---LSVVVVDNLQTGHE-------------------------------------- 39 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCSSCCG--------------------------------------
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCC---CEEEEEeCCCcCch--------------------------------------
Confidence 4789999999999999999999998 89999998753210
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccChh---hhHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRFD---EHIRTAYNINVKGTQ 202 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~~---~~~~~~~~~nv~~~~ 202 (366)
.....++.++.+|+.+.+ .+.++++ ++|+|||+|+..... .++...+++|+.++.
T Consensus 40 --------------~~~~~~~~~~~~D~~~~~------~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~ 99 (330)
T 2c20_A 40 --------------DAITEGAKFYNGDLRDKA------FLRDVFTQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGAL 99 (330)
T ss_dssp --------------GGSCTTSEEEECCTTCHH------HHHHHHHHSCEEEEEECCCCCCHHHHHHSHHHHHHHHHHHHH
T ss_pred --------------hhcCCCcEEEECCCCCHH------HHHHHHhhcCCCEEEECCcccCccccccCHHHHHHHHhHHHH
Confidence 001136788999999876 7888887 899999999976532 356778899999999
Q ss_pred HHHHHHHhcCCCcEEEEeeCcceecCc--cccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHH
Q psy17528 203 TILALAKRMKGLKSFVHVSTAYCNCDR--KFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATA 280 (366)
Q Consensus 203 ~ll~~a~~~~~~~~~v~iSS~~~~~~~--~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~ 280 (366)
++++++.+. ++++||++||.++|+.. .+++|+..+.|. +.|+.+|..+
T Consensus 100 ~l~~a~~~~-~~~~~v~~Ss~~~~~~~~~~~~~E~~~~~~~-----------------------------~~Y~~sK~~~ 149 (330)
T 2c20_A 100 CLLEVMDEF-KVDKFIFSSTAATYGEVDVDLITEETMTNPT-----------------------------NTYGETKLAI 149 (330)
T ss_dssp HHHHHHHHT-TCCEEEEECCGGGGCSCSSSSBCTTSCCCCS-----------------------------SHHHHHHHHH
T ss_pred HHHHHHHHc-CCCEEEEeCCceeeCCCCCCCCCcCCCCCCC-----------------------------ChHHHHHHHH
Confidence 999999886 78899999999888753 245555443332 7899999999
Q ss_pred HHHHHHhc--CCCCEEEEecCccccCCCCCCCcccc-ccchHHHHHHHHhc--CcceeecC------CCCcccCcccHHH
Q psy17528 281 EDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIK-GFNGVMALALGAGT--GLIRVVQT------DPNISMDVVPGDR 349 (366)
Q Consensus 281 E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~-~~~~~~~~~~~~~~--g~~~~l~~------~~~~~~~~v~vdD 349 (366)
|.+++.+. .+++++++||++|||++.....+... ....+...+..... +....+++ +++..++|+|++|
T Consensus 150 e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~D 229 (330)
T 2c20_A 150 EKMLHWYSQASNLRYKIFRYFNVAGATPNGIIGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHVED 229 (330)
T ss_dssp HHHHHHHHHTSSCEEEEEECSEEECCCTTCSSCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCCSSSSSSCEECEEEHHH
T ss_pred HHHHHHHHHHhCCcEEEEecCcccCCCCcCccccccccccchHHHHHHHHhhcCCCeEEeCCccccCCCceeEeeEeHHH
Confidence 99998876 58999999999999997432111110 01122233333332 33344554 5778899999999
Q ss_pred HHHHHHHHHHhhh
Q psy17528 350 VINAMAALAWYFL 362 (366)
Q Consensus 350 va~ai~~~~~~~~ 362 (366)
+|++++.+++.+.
T Consensus 230 va~a~~~~~~~~~ 242 (330)
T 2c20_A 230 LVAAHFLGLKDLQ 242 (330)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc
Confidence 9999999998753
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-27 Score=231.72 Aligned_cols=224 Identities=18% Similarity=0.185 Sum_probs=171.9
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++|+|||||||||||++++++|++.| ++|++++|+....... .+.
T Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~---~~~--------------------------- 52 (357)
T 1rkx_A 6 FWQGKRVFVTGHTGFKGGWLSLWLQTMG---ATVKGYSLTAPTVPSL---FET--------------------------- 52 (357)
T ss_dssp HHTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSCSSSSCH---HHH---------------------------
T ss_pred hhCCCEEEEECCCchHHHHHHHHHHhCC---CeEEEEeCCCcccchh---hHh---------------------------
Confidence 4568899999999999999999999998 8999999976532210 000
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhC--cCEEEEcCcccCh---hhhHHHHHHHHHH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQ--TTIIFHIAATVRF---DEHIRTAYNINVK 199 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~--~d~Vih~a~~~~~---~~~~~~~~~~nv~ 199 (366)
.. ...++.++.+|+.+.+ .+..++++ +|+|||+||.... ...+...+++|+.
T Consensus 53 ----------------~~-~~~~~~~~~~Dl~d~~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~ 109 (357)
T 1rkx_A 53 ----------------AR-VADGMQSEIGDIRDQN------KLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVM 109 (357)
T ss_dssp ----------------TT-TTTTSEEEECCTTCHH------HHHHHHHHHCCSEEEECCSCCCHHHHHHCHHHHHHHHTH
T ss_pred ----------------hc-cCCceEEEEccccCHH------HHHHHHHhcCCCEEEECCCCcccccchhCHHHHHHHHHH
Confidence 00 1257889999999976 78888875 8999999996432 3456678999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEeeCcceecCcc---ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHH
Q psy17528 200 GTQTILALAKRMKGLKSFVHVSTAYCNCDRK---FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLT 276 (366)
Q Consensus 200 ~~~~ll~~a~~~~~~~~~v~iSS~~~~~~~~---~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~s 276 (366)
++.++++++.+.+.+++|||+||.++|+... ++.|+....| .+.|+.+
T Consensus 110 ~~~~l~~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~~E~~~~~~-----------------------------~~~Y~~s 160 (357)
T 1rkx_A 110 GTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENEAMGG-----------------------------YDPYSNS 160 (357)
T ss_dssp HHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTTSCBCC-----------------------------SSHHHHH
T ss_pred HHHHHHHHHHHhCCCCeEEEecCHHHhCCCCcCCCCCCCCCCCC-----------------------------CCccHHH
Confidence 9999999998874488999999999987543 3444432222 2789999
Q ss_pred HHHHHHHHHHhc--C---------CCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcc
Q psy17528 277 KATAEDLVRQVG--H---------ELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVV 345 (366)
Q Consensus 277 K~~~E~~l~~~~--~---------gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v 345 (366)
|+.+|++++.+. . +++++++||++||||+..+... .+..++.....|....+. +++..++|+
T Consensus 161 K~~~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~------~~~~~~~~~~~g~~~~~~-~~~~~~~~v 233 (357)
T 1rkx_A 161 KGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDR------IVPDILRAFEQSQPVIIR-NPHAIRPWQ 233 (357)
T ss_dssp HHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSC------HHHHHHHHHHTTCCEECS-CTTCEECCE
T ss_pred HHHHHHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCCCCcccc------HHHHHHHHHhcCCCEEEC-CCCCeeccE
Confidence 999999998875 2 8999999999999997642111 224456666677766554 567889999
Q ss_pred cHHHHHHHHHHHHHh
Q psy17528 346 PGDRVINAMAALAWY 360 (366)
Q Consensus 346 ~vdDva~ai~~~~~~ 360 (366)
|++|+|++++.+++.
T Consensus 234 ~v~Dva~a~~~~~~~ 248 (357)
T 1rkx_A 234 HVLEPLSGYLLLAQK 248 (357)
T ss_dssp ETHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHh
Confidence 999999999998875
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-27 Score=232.99 Aligned_cols=223 Identities=15% Similarity=0.055 Sum_probs=173.7
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
++|+|||||||||||++++++|++.| ++|++++|+.....
T Consensus 28 ~~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~------------------------------------- 67 (379)
T 2c5a_A 28 ENLKISITGAGGFIASHIARRLKHEG---HYVIASDWKKNEHM------------------------------------- 67 (379)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSCCSSS-------------------------------------
T ss_pred cCCeEEEECCccHHHHHHHHHHHHCC---CeEEEEECCCccch-------------------------------------
Confidence 47899999999999999999999998 89999999864321
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh----hhhHHHHHHHHHHHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF----DEHIRTAYNINVKGTQ 202 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~----~~~~~~~~~~nv~~~~ 202 (366)
.....++.++.+|+.+.+ .+..+++++|+|||+|+.... ..++...+++|+.++.
T Consensus 68 ---------------~~~~~~v~~~~~Dl~d~~------~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~Nv~g~~ 126 (379)
T 2c5a_A 68 ---------------TEDMFCDEFHLVDLRVME------NCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISF 126 (379)
T ss_dssp ---------------CGGGTCSEEEECCTTSHH------HHHHHHTTCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------hhccCCceEEECCCCCHH------HHHHHhCCCCEEEECceecCcccccccCHHHHHHHHHHHHH
Confidence 001146789999999876 788889999999999997643 3457788999999999
Q ss_pred HHHHHHHhcCCCcEEEEeeCcceecCcc-------ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHH
Q psy17528 203 TILALAKRMKGLKSFVHVSTAYCNCDRK-------FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTL 275 (366)
Q Consensus 203 ~ll~~a~~~~~~~~~v~iSS~~~~~~~~-------~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~ 275 (366)
++++++.+. ++++|||+||.++|+... ++.|+... .....+.|+.
T Consensus 127 ~ll~a~~~~-~~~~~V~~SS~~v~~~~~~~~~~~~~~~E~~~~---------------------------~~~~~~~Y~~ 178 (379)
T 2c5a_A 127 NMIEAARIN-GIKRFFYASSACIYPEFKQLETTNVSLKESDAW---------------------------PAEPQDAFGL 178 (379)
T ss_dssp HHHHHHHHT-TCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGS---------------------------SBCCSSHHHH
T ss_pred HHHHHHHHc-CCCEEEEEeehheeCCCCCCCccCCCcCcccCC---------------------------CCCCCChhHH
Confidence 999999886 788999999998886432 23333210 0011278999
Q ss_pred HHHHHHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcc-eeecCCCCcccCcccHHHHHH
Q psy17528 276 TKATAEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLI-RVVQTDPNISMDVVPGDRVIN 352 (366)
Q Consensus 276 sK~~~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~l~~~~~~~~~~v~vdDva~ 352 (366)
+|+.+|.+++.+. .+++++++||++|||+...+..... ..+..++.....+.. ..++++++..++|+|++|+|+
T Consensus 179 sK~~~E~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~ 255 (379)
T 2c5a_A 179 EKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGRE---KAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVE 255 (379)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCC---CHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCceeCcCCCcccccc---cHHHHHHHHHHhCCCceEEeCCCCeeEEEEEHHHHHH
Confidence 9999999998775 5899999999999999875432211 123455666666665 566778888999999999999
Q ss_pred HHHHHHHhh
Q psy17528 353 AMAALAWYF 361 (366)
Q Consensus 353 ai~~~~~~~ 361 (366)
+++.+++.+
T Consensus 256 ai~~~l~~~ 264 (379)
T 2c5a_A 256 GVLRLTKSD 264 (379)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHhhcc
Confidence 999998765
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=235.56 Aligned_cols=251 Identities=11% Similarity=0.036 Sum_probs=171.7
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcC--------------HHHHHHHHhhhhhhhhhhhc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTS--------------ITQRVYNYFNDAVFDRMRLE 109 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~--------------~~~~i~~~~~~~~~~~~~~~ 109 (366)
-+.++++|||||||||||++++++|++.| ++|++++|...... ..+.+.+.. .
T Consensus 7 ~~~~~~~vlVTG~tGfIG~~l~~~L~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~- 73 (404)
T 1i24_A 7 HHHHGSRVMVIGGDGYCGWATALHLSKKN---YEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWK---------A- 73 (404)
T ss_dssp -----CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHH---------H-
T ss_pred cccCCCeEEEeCCCcHHHHHHHHHHHhCC---CeEEEEEecCccccccccccccccccchhhhhhhhHh---------h-
Confidence 34578999999999999999999999998 89999988531100 000111100 0
Q ss_pred CCCCCCccccccccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhC--cCEEEEcCcccChh
Q psy17528 110 CPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQ--TTIIFHIAATVRFD 187 (366)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~--~d~Vih~a~~~~~~ 187 (366)
....++.++.+|+.+.+ .+.+++++ +|+|||+||.....
T Consensus 74 ---------------------------------~~~~~v~~~~~Dl~d~~------~~~~~~~~~~~D~Vih~A~~~~~~ 114 (404)
T 1i24_A 74 ---------------------------------LTGKSIELYVGDICDFE------FLAESFKSFEPDSVVHFGEQRSAP 114 (404)
T ss_dssp ---------------------------------HHCCCCEEEESCTTSHH------HHHHHHHHHCCSEEEECCSCCCHH
T ss_pred ---------------------------------ccCCceEEEECCCCCHH------HHHHHHhccCCCEEEECCCCCCcc
Confidence 00246889999999876 78888876 99999999976432
Q ss_pred h---hH---HHHHHHHHHHHHHHHHHHHhcCCC-cEEEEeeCcceecCcc-ccccccCCCCCChHHHHHHhhhcchHHHH
Q psy17528 188 E---HI---RTAYNINVKGTQTILALAKRMKGL-KSFVHVSTAYCNCDRK-FIAEKFYPPVFTAEELSALVAHASDEEIA 259 (366)
Q Consensus 188 ~---~~---~~~~~~nv~~~~~ll~~a~~~~~~-~~~v~iSS~~~~~~~~-~~~e~~~~~p~~~~~~~~~~~~~~~~~~~ 259 (366)
. +. ...+++|+.++.++++++.+. +. ++||++||.++|+... ++.|+.+...... .
T Consensus 115 ~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~-~~~~~~V~~SS~~vyg~~~~~~~E~~~~~~~~~---------------~ 178 (404)
T 1i24_A 115 YSMIDRSRAVYTQHNNVIGTLNVLFAIKEF-GEECHLVKLGTMGEYGTPNIDIEEGYITITHNG---------------R 178 (404)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEEECCGGGGCCCSSCBCSSEEEEEETT---------------E
T ss_pred chhhCccchhhhHHHHHHHHHHHHHHHHHh-CCCcEEEEeCcHHHhCCCCCCCCcccccccccc---------------c
Confidence 1 12 347889999999999999886 55 6999999998887532 3444311000000 0
Q ss_pred hhhhcccCCCCchHHHHHHHHHHHHHHhc--CCCCEEEEecCccccCCCCCC---Cccccc-------cchHHHHHHHHh
Q psy17528 260 LLNEHIIGGKPNSYTLTKATAEDLVRQVG--HELPICVLRPSIVFPTLQEPM---PLWIKG-------FNGVMALALGAG 327 (366)
Q Consensus 260 ~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~---~~~~~~-------~~~~~~~~~~~~ 327 (366)
..+........+.|+.+|+.+|.+++.+. .+++++++||++||||+..+. +.+... ...+..++..+.
T Consensus 179 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ivrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (404)
T 1i24_A 179 TDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTALNRFCVQAA 258 (404)
T ss_dssp EEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTCCHHHHHHHHHH
T ss_pred cccccCCCCCCChhHHHHHHHHHHHHHHHHhcCCeEEEEecceeeCCCCCccccccccccccccccchhhHHHHHHHHHH
Confidence 00000011123789999999999998775 589999999999999986431 111100 012456677777
Q ss_pred cCcceeecCCCCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 328 TGLIRVVQTDPNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 328 ~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
.|....++++++..++|+|++|+|++++.+++.+.
T Consensus 259 ~g~~~~~~g~g~~~~~~i~v~Dva~a~~~~l~~~~ 293 (404)
T 1i24_A 259 VGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPA 293 (404)
T ss_dssp HTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHSCC
T ss_pred cCCeeEEeCCCCceECcEEHHHHHHHHHHHHhCcc
Confidence 88877778888899999999999999999998754
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-27 Score=226.88 Aligned_cols=216 Identities=17% Similarity=0.127 Sum_probs=168.2
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
+.+.++|||||||||||++++++|++.| ++|++++|+... .
T Consensus 9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G---~~V~~~~r~~~~-~----------------------------------- 49 (321)
T 2pk3_A 9 HHGSMRALITGVAGFVGKYLANHLTEQN---VEVFGTSRNNEA-K----------------------------------- 49 (321)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCTTC-C-----------------------------------
T ss_pred ccCcceEEEECCCChHHHHHHHHHHHCC---CEEEEEecCCcc-c-----------------------------------
Confidence 4467899999999999999999999998 899999997532 0
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhC--cCEEEEcCcccChh---hhHHHHHHHHHH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQ--TTIIFHIAATVRFD---EHIRTAYNINVK 199 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~--~d~Vih~a~~~~~~---~~~~~~~~~nv~ 199 (366)
. -++.++.+|+.+.+ .+..++++ +|+|||+||..... .++...+++|+.
T Consensus 50 ----------------~----l~~~~~~~Dl~d~~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~ 103 (321)
T 2pk3_A 50 ----------------L----PNVEMISLDIMDSQ------RVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVF 103 (321)
T ss_dssp ----------------C----TTEEEEECCTTCHH------HHHHHHHHHCCSEEEECCSCCCHHHHTTCHHHHHHHHHH
T ss_pred ----------------c----ceeeEEECCCCCHH------HHHHHHHhcCCCEEEEcCcccchhhhhhcHHHHHHHHHH
Confidence 1 16788999999876 78888875 99999999976532 356788999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEeeCcceecCc----cccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHH
Q psy17528 200 GTQTILALAKRMKGLKSFVHVSTAYCNCDR----KFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTL 275 (366)
Q Consensus 200 ~~~~ll~~a~~~~~~~~~v~iSS~~~~~~~----~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~ 275 (366)
++.++++++.+..++++||++||.++|+.. .+++|+..+.|. +.|+.
T Consensus 104 g~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~E~~~~~~~-----------------------------~~Y~~ 154 (321)
T 2pk3_A 104 GTLHVLDAVRDSNLDCRILTIGSSEEYGMILPEESPVSEENQLRPM-----------------------------SPYGV 154 (321)
T ss_dssp HHHHHHHHHHHHTCCCEEEEEEEGGGTBSCCGGGCSBCTTSCCBCC-----------------------------SHHHH
T ss_pred HHHHHHHHHHHhCCCCeEEEEccHHhcCCCCCCCCCCCCCCCCCCC-----------------------------CccHH
Confidence 999999999765457899999999888643 345555433332 78999
Q ss_pred HHHHHHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhc---C--cceeecCCCCcccCcccHH
Q psy17528 276 TKATAEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGT---G--LIRVVQTDPNISMDVVPGD 348 (366)
Q Consensus 276 sK~~~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~---g--~~~~l~~~~~~~~~~v~vd 348 (366)
+|+.+|.+++.+. .+++++++||++||||+.... .+ +..++..+.. | ....++++++..++|+|++
T Consensus 155 sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~-~~------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~v~ 227 (321)
T 2pk3_A 155 SKASVGMLARQYVKAYGMDIIHTRTFNHIGPGQSLG-FV------TQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVR 227 (321)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCTT-SH------HHHHHHHHHHHHTTSSCSEEEESCSSCEEEEEEHH
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEeCcccCcCCCCC-ch------HHHHHHHHHHHhcCCCCCeEEeCCCCcEEeeEEHH
Confidence 9999999998876 589999999999999986531 11 1233444444 6 4555677788899999999
Q ss_pred HHHHHHHHHHHhh
Q psy17528 349 RVINAMAALAWYF 361 (366)
Q Consensus 349 Dva~ai~~~~~~~ 361 (366)
|+|++++.+++.+
T Consensus 228 Dva~a~~~~~~~~ 240 (321)
T 2pk3_A 228 DIVQAYWLLSQYG 240 (321)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCC
Confidence 9999999998865
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-28 Score=228.48 Aligned_cols=213 Identities=15% Similarity=0.092 Sum_probs=164.2
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
++++|+|||||||||||++++++|++.|+ +...
T Consensus 3 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~---------~~~~-------------------------------------- 35 (319)
T 4b8w_A 3 YFQSMRILVTGGSGLVGKAIQKVVADGAG---------LPGE-------------------------------------- 35 (319)
T ss_dssp CCCCCEEEEETCSSHHHHHHHHHHHTTTC---------CTTC--------------------------------------
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhcCC---------cccc--------------------------------------
Confidence 46789999999999999999999999983 1110
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhC--cCEEEEcCcccC----hhhhHHHHHHHHH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQ--TTIIFHIAATVR----FDEHIRTAYNINV 198 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~--~d~Vih~a~~~~----~~~~~~~~~~~nv 198 (366)
....+.++.+|+.+.+ .+.+++++ +|+|||+|+... ...++...+++|+
T Consensus 36 -------------------~~~~~~~~~~D~~d~~------~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~nv 90 (319)
T 4b8w_A 36 -------------------DWVFVSSKDADLTDTA------QTRALFEKVQPTHVIHLAAMVGGLFRNIKYNLDFWRKNV 90 (319)
T ss_dssp -------------------EEEECCTTTCCTTSHH------HHHHHHHHSCCSEEEECCCCCCCHHHHTTCHHHHHHHHH
T ss_pred -------------------cccccCceecccCCHH------HHHHHHhhcCCCEEEECceecccccccccCHHHHHHHHH
Confidence 0022334578999876 78888876 999999999864 2345677899999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeeCcceecCcc--cccccc----CCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCch
Q psy17528 199 KGTQTILALAKRMKGLKSFVHVSTAYCNCDRK--FIAEKF----YPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNS 272 (366)
Q Consensus 199 ~~~~~ll~~a~~~~~~~~~v~iSS~~~~~~~~--~~~e~~----~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (366)
.++.++++++++. ++++|||+||.++|+... +++|+. .+.|. ...
T Consensus 91 ~gt~~ll~a~~~~-~~~~~v~~SS~~vyg~~~~~~~~E~~~~~~~~~p~----------------------------~~~ 141 (319)
T 4b8w_A 91 HMNDNVLHSAFEV-GARKVVSCLSTCIFPDKTTYPIDETMIHNGPPHNS----------------------------NFG 141 (319)
T ss_dssp HHHHHHHHHHHHT-TCSEEEEECCGGGSCSSCCSSBCGGGGGBSCCCSS----------------------------SHH
T ss_pred HHHHHHHHHHHHc-CCCeEEEEcchhhcCCCCCCCccccccccCCCCCC----------------------------cch
Confidence 9999999999987 789999999999987533 455553 11111 136
Q ss_pred HHHHHHHHHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHH----HhcCcceeecCCCCcccCccc
Q psy17528 273 YTLTKATAEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALG----AGTGLIRVVQTDPNISMDVVP 346 (366)
Q Consensus 273 Y~~sK~~~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~~l~~~~~~~~~~v~ 346 (366)
|+.+|+.+|++++.+. .+++++++||++||||+..+..... ..+..++.. ...+....++++++..++|+|
T Consensus 142 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~Gp~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~ 218 (319)
T 4b8w_A 142 YSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDG---HVLPGLIHKVHLAKSSGSALTVWGTGNPRRQFIY 218 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCCCTTTS---CHHHHHHHHHHHHHHHTCCEEEESCSCCEECEEE
T ss_pred HHHHHHHHHHHHHHHHHhhCCCEEEEeeccccCCCCCCCCccc---cccHHHHHHHHHHhccCCceEEeCCCCeeEEEEe
Confidence 9999999999998876 6899999999999999875432211 112334444 677888888889999999999
Q ss_pred HHHHHHHHHHHHHhh
Q psy17528 347 GDRVINAMAALAWYF 361 (366)
Q Consensus 347 vdDva~ai~~~~~~~ 361 (366)
++|+|++++.+++.+
T Consensus 219 v~Dva~a~~~~~~~~ 233 (319)
T 4b8w_A 219 SLDLAQLFIWVLREY 233 (319)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999999874
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.3e-28 Score=231.25 Aligned_cols=248 Identities=16% Similarity=0.133 Sum_probs=175.6
Q ss_pred ccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccc
Q psy17528 42 IQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGI 121 (366)
Q Consensus 42 ~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (366)
+...+++++|||||||||||++++++|++.| ++|++++|+... .+.+.+.+. ..
T Consensus 5 ~~~~~~~~~vlVTGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~---~~~~~~~~~--------~~------------ 58 (342)
T 1y1p_A 5 NAVLPEGSLVLVTGANGFVASHVVEQLLEHG---YKVRGTARSASK---LANLQKRWD--------AK------------ 58 (342)
T ss_dssp TCSSCTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSHHH---HHHHHHHHH--------HH------------
T ss_pred cccCCCCCEEEEECCccHHHHHHHHHHHHCC---CEEEEEeCCccc---HHHHHHHhh--------cc------------
Confidence 3445778999999999999999999999998 899999997431 112221111 00
Q ss_pred ccccccccchhhhhhccccCCCCCCcEEEE-eccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHH
Q psy17528 122 THRVYNYFNDAVFDRMRLECPNYADKVDIV-CGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKG 200 (366)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~ 200 (366)
...++.++ .+|+.+.+ .+.++++++|+|||+||......++...+++|+.+
T Consensus 59 ----------------------~~~~~~~~~~~D~~d~~------~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~n~~g 110 (342)
T 1y1p_A 59 ----------------------YPGRFETAVVEDMLKQG------AYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGG 110 (342)
T ss_dssp ----------------------STTTEEEEECSCTTSTT------TTTTTTTTCSEEEECCCCCSCCSCHHHHHHHHHHH
T ss_pred ----------------------CCCceEEEEecCCcChH------HHHHHHcCCCEEEEeCCCCCCCCCHHHHHHHHHHH
Confidence 01467888 89999987 67777789999999999876555677889999999
Q ss_pred HHHHHHHHHhcCCCcEEEEeeCcceecCc------cccccccCCCCCChHHHHHHhhhcchHHHHhhhhcc-cCCCCchH
Q psy17528 201 TQTILALAKRMKGLKSFVHVSTAYCNCDR------KFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHI-IGGKPNSY 273 (366)
Q Consensus 201 ~~~ll~~a~~~~~~~~~v~iSS~~~~~~~------~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Y 273 (366)
+.++++++.+..++++||++||.++++.. .+++|+.+... ... .....+.. +....+.|
T Consensus 111 ~~~ll~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~E~~~~~~----~~~----------~~~~~~~~~~~~~~~~Y 176 (342)
T 1y1p_A 111 TLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLE----SID----------KAKTLPESDPQKSLWVY 176 (342)
T ss_dssp HHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHH----HHH----------HHHHSCTTSTTHHHHHH
T ss_pred HHHHHHHHHhCCCCcEEEEeccHHHhcCCCCCCCCcccCccccCch----hhh----------hhccccccccccchHHH
Confidence 99999999854478899999999887432 24445432110 000 00000000 00011789
Q ss_pred HHHHHHHHHHHHHhc----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHH
Q psy17528 274 TLTKATAEDLVRQVG----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDR 349 (366)
Q Consensus 274 ~~sK~~~E~~l~~~~----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdD 349 (366)
+.+|+.+|.+++.+. .+++++++||++|||+...+... . .....++..+..|....+++++ ..++|+|++|
T Consensus 177 ~~sK~~~e~~~~~~~~~~~~~~~~~~~rp~~v~g~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~v~D 251 (342)
T 1y1p_A 177 AASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQ---S-GSTSGWMMSLFNGEVSPALALM-PPQYYVSAVD 251 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTC---C-CHHHHHHHHHHTTCCCHHHHTC-CSEEEEEHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEEcCCceECCCCCCCCC---C-ccHHHHHHHHHcCCCccccccC-CcCCEeEHHH
Confidence 999999999998876 37889999999999998754211 0 1235566677777766555554 5789999999
Q ss_pred HHHHHHHHHHhhh
Q psy17528 350 VINAMAALAWYFL 362 (366)
Q Consensus 350 va~ai~~~~~~~~ 362 (366)
+|++++.+++.+.
T Consensus 252 va~a~~~~~~~~~ 264 (342)
T 1y1p_A 252 IGLLHLGCLVLPQ 264 (342)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHHcCcc
Confidence 9999999988654
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-28 Score=229.88 Aligned_cols=219 Identities=16% Similarity=0.101 Sum_probs=169.0
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHh--CCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRC--CPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~--g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+|+|||||||||||++++++|++. | ++|++++|+..... +
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~~~g---~~V~~~~r~~~~~~----~------------------------------- 43 (312)
T 2yy7_A 2 NPKILIIGACGQIGTELTQKLRKLYGT---ENVIASDIRKLNTD----V------------------------------- 43 (312)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHHHCG---GGEEEEESCCCSCH----H-------------------------------
T ss_pred CceEEEECCccHHHHHHHHHHHHhCCC---CEEEEEcCCCcccc----c-------------------------------
Confidence 478999999999999999999998 7 78999999764310 0
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccCh--hhhHHHHHHHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRF--DEHIRTAYNINVKGT 201 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~--~~~~~~~~~~nv~~~ 201 (366)
..++.++.+|+.+.+ .+.++++ ++|+|||+|+.... ..++...+++|+.++
T Consensus 44 -------------------~~~~~~~~~D~~d~~------~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~n~~~~ 98 (312)
T 2yy7_A 44 -------------------VNSGPFEVVNALDFN------QIEHLVEVHKITDIYLMAALLSATAEKNPAFAWDLNMNSL 98 (312)
T ss_dssp -------------------HHSSCEEECCTTCHH------HHHHHHHHTTCCEEEECCCCCHHHHHHCHHHHHHHHHHHH
T ss_pred -------------------cCCCceEEecCCCHH------HHHHHHhhcCCCEEEECCccCCCchhhChHHHHHHHHHHH
Confidence 023568899999876 7888887 89999999997543 245677899999999
Q ss_pred HHHHHHHHhcCCCcEEEEeeCcceecCcc---ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHH
Q psy17528 202 QTILALAKRMKGLKSFVHVSTAYCNCDRK---FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKA 278 (366)
Q Consensus 202 ~~ll~~a~~~~~~~~~v~iSS~~~~~~~~---~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~ 278 (366)
.++++++.+. ++++|||+||.++|+... +..|...+.| .+.|+.+|+
T Consensus 99 ~~l~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~e~~~~~~-----------------------------~~~Y~~sK~ 148 (312)
T 2yy7_A 99 FHVLNLAKAK-KIKKIFWPSSIAVFGPTTPKENTPQYTIMEP-----------------------------STVYGISKQ 148 (312)
T ss_dssp HHHHHHHHTT-SCSEEECCEEGGGCCTTSCSSSBCSSCBCCC-----------------------------CSHHHHHHH
T ss_pred HHHHHHHHHc-CCCEEEEeccHHHhCCCCCCCCccccCcCCC-----------------------------CchhHHHHH
Confidence 9999999986 788999999999887532 3444433332 278999999
Q ss_pred HHHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHH
Q psy17528 279 TAEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAA 356 (366)
Q Consensus 279 ~~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~ 356 (366)
.+|.+++.+. .+++++++||+.|||+...+..... ......+.....+....++++++..++|+|++|+|++++.
T Consensus 149 ~~e~~~~~~~~~~~~~~~~lrp~~v~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~ 225 (312)
T 2yy7_A 149 AGERWCEYYHNIYGVDVRSIRYPGLISWSTPPGGGTT---DYAVDIFYKAIADKKYECFLSSETKMPMMYMDDAIDATIN 225 (312)
T ss_dssp HHHHHHHHHHHHHCCEEECEEECEEECSSSCCCSCTT---THHHHHHHHHHHTSEEEESSCTTCCEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcEEEEeCCeEecCCCCCCCchh---hhHHHHHHHHHcCCCeEEecCCCceeeeeeHHHHHHHHHH
Confidence 9999998775 5899999999999998765432211 1123333444444445566678889999999999999999
Q ss_pred HHHhhh
Q psy17528 357 LAWYFL 362 (366)
Q Consensus 357 ~~~~~~ 362 (366)
+++.+.
T Consensus 226 ~~~~~~ 231 (312)
T 2yy7_A 226 IMKAPV 231 (312)
T ss_dssp HHHSCG
T ss_pred HHhCcc
Confidence 998764
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-27 Score=229.77 Aligned_cols=220 Identities=19% Similarity=0.168 Sum_probs=170.4
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHh--CCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRC--CPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~--g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+|+|||||||||||++++++|++. | ++|++++|+...... + .+..
T Consensus 4 m~~vlVTGatG~iG~~l~~~L~~~~~g---~~V~~~~r~~~~~~~-~------------~~~~----------------- 50 (348)
T 1oc2_A 4 FKNIIVTGGAGFIGSNFVHYVYNNHPD---VHVTVLDKLTYAGNK-A------------NLEA----------------- 50 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTT---CEEEEEECCCTTCCG-G------------GTGG-----------------
T ss_pred CcEEEEeCCccHHHHHHHHHHHHhCCC---CEEEEEeCCCCCCCh-h------------HHhh-----------------
Confidence 579999999999999999999999 5 799999997532110 0 0000
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh---hhHHHHHHHHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD---EHIRTAYNINVKGTQ 202 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~---~~~~~~~~~nv~~~~ 202 (366)
. ...++.++.+|+.+.+ .+.++++++|+|||+||..... .++...+++|+.++.
T Consensus 51 ---------------~--~~~~~~~~~~Dl~d~~------~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~ 107 (348)
T 1oc2_A 51 ---------------I--LGDRVELVVGDIADAE------LVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTY 107 (348)
T ss_dssp ---------------G--CSSSEEEEECCTTCHH------HHHHHHTTCSEEEECCSCCCHHHHHHCCHHHHHHHTHHHH
T ss_pred ---------------h--ccCCeEEEECCCCCHH------HHHHHhhcCCEEEECCcccCccchhhCHHHHHHHHHHHHH
Confidence 0 1257899999999976 7889999999999999976532 345678899999999
Q ss_pred HHHHHHHhcCCCcEEEEeeCcceecCc--------------cccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 203 TILALAKRMKGLKSFVHVSTAYCNCDR--------------KFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 203 ~ll~~a~~~~~~~~~v~iSS~~~~~~~--------------~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
++++++.+. ++ +|||+||..+|+.. .+++|+....|
T Consensus 108 ~l~~a~~~~-~~-~~v~~SS~~vyg~~~~~~~~~~~~~~~~~~~~E~~~~~~---------------------------- 157 (348)
T 1oc2_A 108 TLLEAARKY-DI-RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNP---------------------------- 157 (348)
T ss_dssp HHHHHHHHH-TC-EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCCCC----------------------------
T ss_pred HHHHHHHHh-CC-eEEEecccceeCCCcccccccccccccCCCcCCCCCCCC----------------------------
Confidence 999999987 55 99999999888643 22333322222
Q ss_pred CCchHHHHHHHHHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCccc
Q psy17528 269 KPNSYTLTKATAEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVP 346 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~ 346 (366)
.+.|+.+|+.+|.+++.+. .+++++++||+.|||+...+. . .+..++.....+....++++++..++|+|
T Consensus 158 -~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 229 (348)
T 1oc2_A 158 -SSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIE-K------FIPRQITNILAGIKPKLYGEGKNVRDWIH 229 (348)
T ss_dssp -CSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTT-S------HHHHHHHHHHHTCCCEEETTSCCEEECEE
T ss_pred -CCccHHHHHHHHHHHHHHHHHhCCCEEEEeeceeeCCCCCcc-c------hHHHHHHHHHcCCCceEecCCCceEeeEE
Confidence 2789999999999998876 589999999999999986421 1 12345566667777777778888999999
Q ss_pred HHHHHHHHHHHHHhh
Q psy17528 347 GDRVINAMAALAWYF 361 (366)
Q Consensus 347 vdDva~ai~~~~~~~ 361 (366)
++|+|++++.+++.+
T Consensus 230 v~Dva~~~~~~~~~~ 244 (348)
T 1oc2_A 230 TNDHSTGVWAILTKG 244 (348)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhCC
Confidence 999999999998764
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=227.39 Aligned_cols=211 Identities=18% Similarity=0.167 Sum_probs=164.0
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
|+|||||||||||++++++|++.| ++|++++|......
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~--------------------------------------- 38 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELG---YEVVVVDNLSSGRR--------------------------------------- 38 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEECCCSSCCG---------------------------------------
T ss_pred CEEEEECCCChHHHHHHHHHHhCC---CEEEEEeCCCCCch---------------------------------------
Confidence 589999999999999999999998 89999999764321
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccC---hhhhHHHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVR---FDEHIRTAYNINVKGTQTIL 205 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~---~~~~~~~~~~~nv~~~~~ll 205 (366)
......+.++.+|+.+.+ +.+++++ |+|||+|+... ....+...+++|+.++.+++
T Consensus 39 -------------~~~~~~~~~~~~Dl~d~~-------~~~~~~~-d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~ 97 (312)
T 3ko8_A 39 -------------EFVNPSAELHVRDLKDYS-------WGAGIKG-DVVFHFAANPEVRLSTTEPIVHFNENVVATFNVL 97 (312)
T ss_dssp -------------GGSCTTSEEECCCTTSTT-------TTTTCCC-SEEEECCSSCSSSGGGSCHHHHHHHHHHHHHHHH
T ss_pred -------------hhcCCCceEEECccccHH-------HHhhcCC-CEEEECCCCCCchhhhhCHHHHHHHHHHHHHHHH
Confidence 011357889999999864 3344555 99999999643 23456778899999999999
Q ss_pred HHHHhcCCCcEEEEeeCcceecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHH
Q psy17528 206 ALAKRMKGLKSFVHVSTAYCNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDL 283 (366)
Q Consensus 206 ~~a~~~~~~~~~v~iSS~~~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~ 283 (366)
+++.+. ++++|||+||.++|+... ++.|+....|. +.|+.+|..+|.+
T Consensus 98 ~a~~~~-~~~~iv~~SS~~vyg~~~~~~~~e~~~~~p~-----------------------------~~Y~~sK~~~e~~ 147 (312)
T 3ko8_A 98 EWARQT-GVRTVVFASSSTVYGDADVIPTPEEEPYKPI-----------------------------SVYGAAKAAGEVM 147 (312)
T ss_dssp HHHHHH-TCCEEEEEEEGGGGCSCSSSSBCTTSCCCCC-----------------------------SHHHHHHHHHHHH
T ss_pred HHHHHc-CCCEEEEeCcHHHhCCCCCCCCCCCCCCCCC-----------------------------ChHHHHHHHHHHH
Confidence 999887 788999999999887543 45565444333 7899999999999
Q ss_pred HHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcC-cceeecCCCCcccCcccHHHHHHHHHHHHHh
Q psy17528 284 VRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTG-LIRVVQTDPNISMDVVPGDRVINAMAALAWY 360 (366)
Q Consensus 284 l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~ 360 (366)
++.+. .+++++++||++||||+... ..+..++.....+ ....++++++..++|+|++|+|++++.+++.
T Consensus 148 ~~~~~~~~g~~~~~lrp~~v~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~ 219 (312)
T 3ko8_A 148 CATYARLFGVRCLAVRYANVVGPRLRH--------GVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKK 219 (312)
T ss_dssp HHHHHHHHCCEEEEEEECEEECTTCCS--------SHHHHHHHHHHHCTTEEEEC----CEECEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCEEEEeeccccCcCCCC--------ChHHHHHHHHHhCCCCeEEcCCCCeEEeeEEHHHHHHHHHHHHHh
Confidence 98877 68999999999999997642 1124455555555 4455777888999999999999999999987
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-27 Score=225.89 Aligned_cols=227 Identities=20% Similarity=0.178 Sum_probs=170.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
|++|+|||||||||||++++++|++.|+. ++|++++|....... + .+.
T Consensus 1 M~~m~vlVTGatG~iG~~l~~~L~~~g~~-~~V~~~~r~~~~~~~-~------------~~~------------------ 48 (336)
T 2hun_A 1 MHSMKLLVTGGMGFIGSNFIRYILEKHPD-WEVINIDKLGYGSNP-A------------NLK------------------ 48 (336)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHHCTT-CEEEEEECCCTTCCG-G------------GGT------------------
T ss_pred CCCCeEEEECCCchHHHHHHHHHHHhCCC-CEEEEEecCcccCch-h------------HHh------------------
Confidence 34678999999999999999999999632 689999987422110 0 000
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh---hhHHHHHHHHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD---EHIRTAYNINVKGTQ 202 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~---~~~~~~~~~nv~~~~ 202 (366)
......++.++.+|+.+.+ .+.+++.++|+|||+||..... .++...+++|+.++.
T Consensus 49 ---------------~~~~~~~~~~~~~Dl~d~~------~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~ 107 (336)
T 2hun_A 49 ---------------DLEDDPRYTFVKGDVADYE------LVKELVRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTY 107 (336)
T ss_dssp ---------------TTTTCTTEEEEECCTTCHH------HHHHHHHTCSEEEECCCCCCHHHHHHCTHHHHHHHHHHHH
T ss_pred ---------------hhccCCceEEEEcCCCCHH------HHHHHhhCCCEEEECCCCcChhhhhhCHHHHHHHHHHHHH
Confidence 0001357899999999976 7888889999999999976532 345678999999999
Q ss_pred HHHHHHHhcCCCcEEEEeeCcceecCc--cccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHH
Q psy17528 203 TILALAKRMKGLKSFVHVSTAYCNCDR--KFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATA 280 (366)
Q Consensus 203 ~ll~~a~~~~~~~~~v~iSS~~~~~~~--~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~ 280 (366)
++++++.+.+..++||++||.++|+.. .+++|+....| .+.|+.+|..+
T Consensus 108 ~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~~~~~~-----------------------------~~~Y~~sK~~~ 158 (336)
T 2hun_A 108 TLLESIRRENPEVRFVHVSTDEVYGDILKGSFTENDRLMP-----------------------------SSPYSATKAAS 158 (336)
T ss_dssp HHHHHHHHHCTTSEEEEEEEGGGGCCCSSSCBCTTBCCCC-----------------------------CSHHHHHHHHH
T ss_pred HHHHHHHHhCCCcEEEEeccHHHHCCCCCCCcCCCCCCCC-----------------------------CCccHHHHHHH
Confidence 999999887334799999999888653 34555443333 27899999999
Q ss_pred HHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHH
Q psy17528 281 EDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALA 358 (366)
Q Consensus 281 E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~ 358 (366)
|.+++.+. .+++++++||++|||+...+. . ....++.....+....++++++..++|+|++|+|++++.++
T Consensus 159 e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~ 231 (336)
T 2hun_A 159 DMLVLGWTRTYNLNASITRCTNNYGPYQFPE-K------LIPKTIIRASLGLKIPIYGTGKNVRDWLYVEDHVRAIELVL 231 (336)
T ss_dssp HHHHHHHHHHTTCEEEEEEECEEESTTCCTT-S------HHHHHHHHHHTTCCEEEETC---CEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEeeeeeeCcCCCcC-c------hHHHHHHHHHcCCCceEeCCCCceeeeEEHHHHHHHHHHHH
Confidence 99998876 689999999999999986421 1 12345666677777777778888999999999999999988
Q ss_pred Hhh
Q psy17528 359 WYF 361 (366)
Q Consensus 359 ~~~ 361 (366)
+..
T Consensus 232 ~~~ 234 (336)
T 2hun_A 232 LKG 234 (336)
T ss_dssp HHC
T ss_pred hCC
Confidence 764
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-27 Score=228.16 Aligned_cols=233 Identities=20% Similarity=0.180 Sum_probs=167.5
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
||+|||||||||||++++++|++.| ++|++++|..... ..+.+.. +.
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~-~~~~~~~---------l~-------------------- 47 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQG---IDLIVFDNLSRKG-ATDNLHW---------LS-------------------- 47 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCCSTT-HHHHHHH---------HH--------------------
T ss_pred CcEEEEeCCCchhHHHHHHHHHhCC---CEEEEEeCCCccC-chhhhhh---------hc--------------------
Confidence 4689999999999999999999998 8999999853211 1111111 00
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhC--cCEEEEcCcccCh---hhhHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQ--TTIIFHIAATVRF---DEHIRTAYNINVKGTQ 202 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~--~d~Vih~a~~~~~---~~~~~~~~~~nv~~~~ 202 (366)
. ..++.++.+|+.+.+ .+..++++ +|+|||+||.... ..++...+++|+.++.
T Consensus 48 -------------~---~~~~~~~~~Dl~d~~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~ 105 (347)
T 1orr_A 48 -------------S---LGNFEFVHGDIRNKN------DVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTL 105 (347)
T ss_dssp -------------T---TCCCEEEECCTTCHH------HHHHHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHHHHHH
T ss_pred -------------c---CCceEEEEcCCCCHH------HHHHHHhccCCCEEEECCcccChhhhhhCHHHHHHHHHHHHH
Confidence 0 135789999999876 78888887 9999999997654 2356778999999999
Q ss_pred HHHHHHHhcCCCc-EEEEeeCcceecCcc--cccccc-------CCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCch
Q psy17528 203 TILALAKRMKGLK-SFVHVSTAYCNCDRK--FIAEKF-------YPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNS 272 (366)
Q Consensus 203 ~ll~~a~~~~~~~-~~v~iSS~~~~~~~~--~~~e~~-------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (366)
++++++.+. +++ +||++||.++|+... +..|.. .+.+.+ +.......+.
T Consensus 106 ~l~~a~~~~-~~~~~iv~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~--------------------e~~~~~~~~~ 164 (347)
T 1orr_A 106 NLLEAVRQY-NSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYD--------------------ESTQLDFHSP 164 (347)
T ss_dssp HHHHHHHHH-CTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBC--------------------TTSCCCCCHH
T ss_pred HHHHHHHHh-CCCceEEEeccHHHhCCCCcCCcccccccccccccccCcc--------------------ccCCCCCCCc
Confidence 999999887 554 999999998887532 222210 000000 0011112378
Q ss_pred HHHHHHHHHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCc-----ceeecCCCCcccCcc
Q psy17528 273 YTLTKATAEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGL-----IRVVQTDPNISMDVV 345 (366)
Q Consensus 273 Y~~sK~~~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~l~~~~~~~~~~v 345 (366)
|+.+|+.+|.+++.+. .+++++++||+.|||+...+... . ..+..++.....+. +..++++++..++|+
T Consensus 165 Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i 240 (347)
T 1orr_A 165 YGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYD--Q--GWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVL 240 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTT--B--CHHHHHHHHHHHHHTTCCCCEEEESSSCCEEECE
T ss_pred hHHHHHHHHHHHHHHHHHhCCcEEEEccCceeCcCCCCCCc--C--cHHHHHHHHHHhCcccCCCCeEEecCCcceEeeE
Confidence 9999999999998876 58999999999999997643210 0 11233445555544 455677888999999
Q ss_pred cHHHHHHHHHHHHHh
Q psy17528 346 PGDRVINAMAALAWY 360 (366)
Q Consensus 346 ~vdDva~ai~~~~~~ 360 (366)
|++|+|++++.+++.
T Consensus 241 ~v~Dva~a~~~~~~~ 255 (347)
T 1orr_A 241 HAEDMISLYFTALAN 255 (347)
T ss_dssp EHHHHHHHHHHHHHT
T ss_pred EHHHHHHHHHHHHhc
Confidence 999999999999875
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=99.95 E-value=7.2e-27 Score=224.48 Aligned_cols=231 Identities=15% Similarity=0.152 Sum_probs=172.6
Q ss_pred CeEEEeCCcchHHHHHHHHHHHh-CCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRC-CPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~-g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
|+|||||||||||++++++|++. | ++|++++|+..... .+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g---~~V~~~~r~~~~~~---------------~~--------------------- 41 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDH---YEVYGLDIGSDAIS---------------RF--------------------- 41 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTT---CEEEEEESCCGGGG---------------GG---------------------
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCC---CEEEEEeCCcchHH---------------Hh---------------------
Confidence 58999999999999999999998 7 78999999753210 00
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh---hhhHHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF---DEHIRTAYNINVKGTQTI 204 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~---~~~~~~~~~~nv~~~~~l 204 (366)
. ...++.++.+|+.+.. ..+..+++++|+|||+||.... ..+....+++|+.++.++
T Consensus 42 -------------~--~~~~~~~~~~D~~~~~-----~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l 101 (345)
T 2bll_A 42 -------------L--NHPHFHFVEGDISIHS-----EWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRI 101 (345)
T ss_dssp -------------T--TCTTEEEEECCTTTCS-----HHHHHHHHHCSEEEECBCCCCHHHHHHSHHHHHHHHTHHHHHH
T ss_pred -------------h--cCCCeEEEeccccCcH-----HHHHhhccCCCEEEEcccccCccchhcCHHHHHHHHHHHHHHH
Confidence 0 1257889999999853 1467788899999999997653 245667889999999999
Q ss_pred HHHHHhcCCCcEEEEeeCcceecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHH
Q psy17528 205 LALAKRMKGLKSFVHVSTAYCNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAED 282 (366)
Q Consensus 205 l~~a~~~~~~~~~v~iSS~~~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~ 282 (366)
++++.+. + ++|||+||.++|+... +++|+..+.+..+ .....+.|+.+|..+|+
T Consensus 102 ~~~~~~~-~-~~~v~~SS~~v~g~~~~~~~~e~~~~~~~~~----------------------~~~~~~~Y~~sK~~~e~ 157 (345)
T 2bll_A 102 IRYCVKY-R-KRIIFPSTSEVYGMCSDKYFDEDHSNLIVGP----------------------VNKPRWIYSVSKQLLDR 157 (345)
T ss_dssp HHHHHHT-T-CEEEEECCGGGGBTCCCSSBCTTTCCCBCCC----------------------TTCGGGHHHHHHHHHHH
T ss_pred HHHHHHh-C-CeEEEEecHHHcCCCCCCCcCCcccccccCc----------------------ccCcccccHHHHHHHHH
Confidence 9999886 5 8999999998887532 3555543211100 00112689999999999
Q ss_pred HHHHhc--CCCCEEEEecCccccCCCCCCCccccc-cchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHH
Q psy17528 283 LVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKG-FNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAW 359 (366)
Q Consensus 283 ~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~ 359 (366)
+++.+. .+++++++||++|||++.......... ...+..++.....+....++++++..++|+|++|+|++++.+++
T Consensus 158 ~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~ 237 (345)
T 2bll_A 158 VIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIE 237 (345)
T ss_dssp HHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEGGGSCCEEECEEHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCCcccccccccccccHHHHHHHHHHcCCCcEEECCCCEEEEEEEHHHHHHHHHHHHh
Confidence 998775 589999999999999986532111001 11234566677778777777788889999999999999999998
Q ss_pred hhh
Q psy17528 360 YFL 362 (366)
Q Consensus 360 ~~~ 362 (366)
.+.
T Consensus 238 ~~~ 240 (345)
T 2bll_A 238 NAG 240 (345)
T ss_dssp CGG
T ss_pred hcc
Confidence 763
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-26 Score=226.44 Aligned_cols=237 Identities=14% Similarity=0.107 Sum_probs=168.8
Q ss_pred CCeEEEeCCcchHHHHHHHHHH-HhCCCccEEEEEEcCCCCcC------HHHHHHHHhhhhhhhhhhhcCCCCCCccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLL-RCCPQIRKIILLIRTRGSTS------ITQRVYNYFNDAVFDRMRLECPNYADKVDIG 120 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll-~~g~~~~~V~~~~R~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (366)
+|+|||||||||||++++++|+ +.| ++|++++|...... ..+.+.+.+.. .
T Consensus 2 ~m~vlVTGatG~iG~~l~~~L~~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~--------~----------- 59 (397)
T 1gy8_A 2 HMRVLVCGGAGYIGSHFVRALLRDTN---HSVVIVDSLVGTHGKSDHVETRENVARKLQQ--------S----------- 59 (397)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCC---CEEEEEECCTTTTTCCTTSCCHHHHHHHHHH--------S-----------
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhCC---CEEEEEecCCcccccccccchHHHHHHHHHH--------h-----------
Confidence 4689999999999999999999 988 89999999754310 01222211110 0
Q ss_pred cccccccccchhhhhhccccCCC-CCCc---EEEEeccCCcCCCCCCHHHHHHHHh--C-cCEEEEcCcccChh---hhH
Q psy17528 121 ITHRVYNYFNDAVFDRMRLECPN-YADK---VDIVCGQLEADTFGLSARDEELLIS--Q-TTIIFHIAATVRFD---EHI 190 (366)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~---i~~~~gDl~~~~~gl~~~~~~~~~~--~-~d~Vih~a~~~~~~---~~~ 190 (366)
... ...+ +.++.+|+.+.+ .+.++++ + +|+|||+|+..... .++
T Consensus 60 --------------------~~~~~~~~~~~~~~~~~Dl~d~~------~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~ 113 (397)
T 1gy8_A 60 --------------------DGPKPPWADRYAALEVGDVRNED------FLNGVFTRHGPIDAVVHMCAFLAVGESVRDP 113 (397)
T ss_dssp --------------------CSSCCTTTTCCCEEEESCTTCHH------HHHHHHHHSCCCCEEEECCCCCCHHHHHHCH
T ss_pred --------------------hccccccCCceEEEEECCCCCHH------HHHHHHHhcCCCCEEEECCCccCcCcchhhH
Confidence 000 0123 889999999976 7778777 6 99999999976542 456
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCcceecCcc---------ccccccCCCCCChHHHHHHhhhcchHHHHhh
Q psy17528 191 RTAYNINVKGTQTILALAKRMKGLKSFVHVSTAYCNCDRK---------FIAEKFYPPVFTAEELSALVAHASDEEIALL 261 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~~~~~~~v~iSS~~~~~~~~---------~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~ 261 (366)
...+++|+.++.++++++.+. ++++||++||.++|+... +++|+..+.|
T Consensus 114 ~~~~~~Nv~g~~~ll~a~~~~-~~~~iv~~SS~~v~g~~~~~~~~~~~~~~~E~~~~~p--------------------- 171 (397)
T 1gy8_A 114 LKYYDNNVVGILRLLQAMLLH-KCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSP--------------------- 171 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCCEEEEEEEGGGTBSCCC-----CCCCBCTTSCCBC---------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHh-CCCEEEEECCHHHhCCCCcccccccccCcCccCCCCC---------------------
Confidence 778999999999999999886 788999999998886432 3444433222
Q ss_pred hhcccCCCCchHHHHHHHHHHHHHHhc--CCCCEEEEecCccccCCCCCCCccc-cccchHHHHHH-----HHhcCc---
Q psy17528 262 NEHIIGGKPNSYTLTKATAEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWI-KGFNGVMALAL-----GAGTGL--- 330 (366)
Q Consensus 262 ~~~~~~~~~~~Y~~sK~~~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~-~~~~~~~~~~~-----~~~~g~--- 330 (366)
.+.|+.+|+.+|.+++.+. .+++++++||++|||+......+.. .....+...+. +...+.
T Consensus 172 --------~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (397)
T 1gy8_A 172 --------ESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQRLT 243 (397)
T ss_dssp --------SSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHHSCC----
T ss_pred --------CCchHHHHHHHHHHHHHHHHHHCCcEEEEeccceeCCCccccccccccchhHHHHHHHHHHHHHHHhcCccc
Confidence 2789999999999998876 5899999999999999753221111 00111222222 444443
Q ss_pred ---------ceeecC------CCCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 331 ---------IRVVQT------DPNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 331 ---------~~~l~~------~~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
...+++ +++..++|||++|+|++++.+++.+.
T Consensus 244 ~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dva~a~~~~l~~~~ 290 (397)
T 1gy8_A 244 IHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVE 290 (397)
T ss_dssp -------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHH
T ss_pred cccccccCCCceeecCcccCCCCCeeEeeEeHHHHHHHHHHHHhccc
Confidence 344554 67889999999999999999987653
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=223.23 Aligned_cols=230 Identities=18% Similarity=0.123 Sum_probs=167.7
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCC------cC-HHHHHHHHhhhhhhhhhhhcCCCCCCccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGS------TS-ITQRVYNYFNDAVFDRMRLECPNYADKVDIG 120 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~------~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (366)
+|+|||||||||||++++++|++.| ++|++++|.... .. ..+++.+.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~r~~~~~~~~~~~l~~~----------------------- 55 (348)
T 1ek6_A 2 AEKVLVTGGAGYIGSHTVLELLEAG---YLPVVIDNFHNAFRGGGSLPESLRRVQEL----------------------- 55 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTT---CCEEEEECSSSSCBCSSSSBHHHHHHHHH-----------------------
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEecCCcccccccccHHHHHHHHhc-----------------------
Confidence 4789999999999999999999998 789999986532 11 11111110
Q ss_pred cccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccCh---hhhHHHHHH
Q psy17528 121 ITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRF---DEHIRTAYN 195 (366)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~---~~~~~~~~~ 195 (366)
...++.++.+|+.+.+ .+.++++ ++|+|||+||.... ..++...++
T Consensus 56 -----------------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~ 106 (348)
T 1ek6_A 56 -----------------------TGRSVEFEEMDILDQG------ALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYR 106 (348)
T ss_dssp -----------------------HTCCCEEEECCTTCHH------HHHHHHHHCCEEEEEECCSCCCHHHHHHCHHHHHH
T ss_pred -----------------------cCCceEEEECCCCCHH------HHHHHHHhcCCCEEEECCCCcCccchhhchHHHHH
Confidence 0146789999999876 7888887 89999999997653 245677899
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEeeCcceecCc--cccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchH
Q psy17528 196 INVKGTQTILALAKRMKGLKSFVHVSTAYCNCDR--KFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSY 273 (366)
Q Consensus 196 ~nv~~~~~ll~~a~~~~~~~~~v~iSS~~~~~~~--~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 273 (366)
+|+.++.++++++.+. ++++||++||.++|+.. .+++|+..+.| ..+.|
T Consensus 107 ~n~~~~~~l~~~~~~~-~~~~iv~~SS~~~~g~~~~~~~~E~~~~~p----------------------------~~~~Y 157 (348)
T 1ek6_A 107 VNLTGTIQLLEIMKAH-GVKNLVFSSSATVYGNPQYLPLDEAHPTGG----------------------------CTNPY 157 (348)
T ss_dssp HHHHHHHHHHHHHHHT-TCCEEEEEEEGGGGCSCSSSSBCTTSCCCC----------------------------CSSHH
T ss_pred HHHHHHHHHHHHHHHh-CCCEEEEECcHHHhCCCCCCCcCCCCCCCC----------------------------CCCch
Confidence 9999999999999886 78899999999888643 24555543322 12789
Q ss_pred HHHHHHHHHHHHHhc---CCCCEEEEecCccccCCCCCCCcccc-c-cchHHHHH-HHHh-cCcceeecC------CCCc
Q psy17528 274 TLTKATAEDLVRQVG---HELPICVLRPSIVFPTLQEPMPLWIK-G-FNGVMALA-LGAG-TGLIRVVQT------DPNI 340 (366)
Q Consensus 274 ~~sK~~~E~~l~~~~---~gl~~~ilRp~~v~G~~~~~~~~~~~-~-~~~~~~~~-~~~~-~g~~~~l~~------~~~~ 340 (366)
+.+|+.+|.+++.+. .+++++++||++||||......+... . ...+...+ .... .+....+++ +++.
T Consensus 158 ~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~ 237 (348)
T 1ek6_A 158 GKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTG 237 (348)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSC
T ss_pred HHHHHHHHHHHHHHHhcCCCcceEEEeeccccCCCcccccCcCcccchhhHHHHHHHHHHhcCCCeEEeCCcccCCCCce
Confidence 999999999998875 34999999999999996421111100 0 01122233 3333 455555554 5678
Q ss_pred ccCcccHHHHHHHHHHHHHhh
Q psy17528 341 SMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 341 ~~~~v~vdDva~ai~~~~~~~ 361 (366)
.++|+|++|+|++++.+++.+
T Consensus 238 ~~~~i~v~Dva~a~~~~~~~~ 258 (348)
T 1ek6_A 238 VRDYIHVVDLAKGHIAALRKL 258 (348)
T ss_dssp EECEEEHHHHHHHHHHHHHHH
T ss_pred EEeeEEHHHHHHHHHHHHhcc
Confidence 899999999999999999875
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.4e-27 Score=230.11 Aligned_cols=235 Identities=18% Similarity=0.147 Sum_probs=170.0
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++|+|||||||||||++++++|++.| .++|++++|+...... .
T Consensus 29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g--~~~V~~~~r~~~~~~~--------------~------------------- 73 (377)
T 2q1s_A 29 KLANTNVMVVGGAGFVGSNLVKRLLELG--VNQVHVVDNLLSAEKI--------------N------------------- 73 (377)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHTT--CSEEEEECCCTTCCGG--------------G-------------------
T ss_pred HhCCCEEEEECCccHHHHHHHHHHHHcC--CceEEEEECCCCCchh--------------h-------------------
Confidence 4678999999999999999999999996 2688999997542100 0
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh---hhHHHHHHHHHHHH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD---EHIRTAYNINVKGT 201 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~---~~~~~~~~~nv~~~ 201 (366)
.. ...++.++.+|+.+.+ .+.++++++|+|||+|+..... .++...+++|+.++
T Consensus 74 ----------------l~-~~~~v~~~~~Dl~d~~------~l~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~ 130 (377)
T 2q1s_A 74 ----------------VP-DHPAVRFSETSITDDA------LLASLQDEYDYVFHLATYHGNQSSIHDPLADHENNTLTT 130 (377)
T ss_dssp ----------------SC-CCTTEEEECSCTTCHH------HHHHCCSCCSEEEECCCCSCHHHHHHCHHHHHHHHTHHH
T ss_pred ----------------cc-CCCceEEEECCCCCHH------HHHHHhhCCCEEEECCCccCchhhhhCHHHHHHHHHHHH
Confidence 00 1357899999999876 7888888999999999976543 35677899999999
Q ss_pred HHHHHHHHhcCCCcEEEEeeCcceecCcc--ccc--cccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHH
Q psy17528 202 QTILALAKRMKGLKSFVHVSTAYCNCDRK--FIA--EKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTK 277 (366)
Q Consensus 202 ~~ll~~a~~~~~~~~~v~iSS~~~~~~~~--~~~--e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK 277 (366)
.++++++.+..++++||++||.++|+... ++. |+....|. ....+.|+.+|
T Consensus 131 ~~ll~a~~~~~~~~~~V~~SS~~vyg~~~~~~~~~~E~~~~~~~-------------------------~~~~~~Y~~sK 185 (377)
T 2q1s_A 131 LKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDIVSL-------------------------HNNDSPYSMSK 185 (377)
T ss_dssp HHHHHHHTTCSSCCEEEEEEEC--------------CCCCCCCS-------------------------SCCCSHHHHHH
T ss_pred HHHHHHHHHhCCCCeEEEeCCHHHcCCCCCCCcCcccccccccc-------------------------cCCCCchHHHH
Confidence 99999998743678999999999887532 344 44310010 01127899999
Q ss_pred HHHHHHHHHhc--CCCCEEEEecCccccCCCCCCCc-cccc-----cchHHHHHHHHhcCcceeecCCCCcccCcccHHH
Q psy17528 278 ATAEDLVRQVG--HELPICVLRPSIVFPTLQEPMPL-WIKG-----FNGVMALALGAGTGLIRVVQTDPNISMDVVPGDR 349 (366)
Q Consensus 278 ~~~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~-~~~~-----~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdD 349 (366)
+.+|.+++.+. .+++++++||++|||+......+ |... ...+..++.....+.+..++++++..++|+|++|
T Consensus 186 ~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D 265 (377)
T 2q1s_A 186 IFGEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENGGVATRDFIFVED 265 (377)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCSSCCSSGGGTSCSHHHHHHHHHHTTCCCCCSGGGCCEECCEEHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeccEECCCCcccccccccCcccccccHHHHHHHHHHcCCCeEEeCCCCeEEeeEEHHH
Confidence 99999998875 58999999999999997621100 1100 1123456666777877777778889999999999
Q ss_pred HHHH-HHHHHHhhh
Q psy17528 350 VINA-MAALAWYFL 362 (366)
Q Consensus 350 va~a-i~~~~~~~~ 362 (366)
+|++ ++.+++.+.
T Consensus 266 va~a~i~~~~~~~~ 279 (377)
T 2q1s_A 266 VANGLIACAADGTP 279 (377)
T ss_dssp HHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHhcCC
Confidence 9999 999887653
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.2e-28 Score=245.91 Aligned_cols=261 Identities=25% Similarity=0.302 Sum_probs=182.1
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCc-cEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQI-RKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGIT 122 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~-~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (366)
...++++|||||||||||++++++|++.+ .+ ++|++++|+.+.....+++.+.+.....+.+...
T Consensus 69 ~~~~~~~VLVTGatG~IG~~l~~~Ll~~~-~~g~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~------------- 134 (478)
T 4dqv_A 69 PSPELRTVLLTGATGFLGRYLVLELLRRL-DVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHF------------- 134 (478)
T ss_dssp CCSCCCEEEEECTTSHHHHHHHHHHHHHS-CTTCEEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHH-------------
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHhcC-CCCCEEEEEECCCCcHHHHHHHHHHHHhcchhhhhhh-------------
Confidence 34568999999999999999999999992 11 8999999987654444454443322000000000
Q ss_pred cccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHH
Q psy17528 123 HRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQ 202 (366)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~ 202 (366)
......++.++.+|++++.+|+....+..+++++|+|||+||..++ ..+...+++|+.++.
T Consensus 135 ------------------~~~~~~~v~~v~~Dl~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~-~~~~~~~~~Nv~gt~ 195 (478)
T 4dqv_A 135 ------------------KELAADRLEVVAGDKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNA-FPYHELFGPNVAGTA 195 (478)
T ss_dssp ------------------HHHHTTTEEEEECCTTSGGGGCCHHHHHHHHHHCCEEEECCSSCSB-SSCCEEHHHHHHHHH
T ss_pred ------------------hhhccCceEEEEeECCCcccCCCHHHHHHHHcCCCEEEECccccCC-cCHHHHHHHHHHHHH
Confidence 0011368999999999999999999999999999999999998776 555667899999999
Q ss_pred HHHHHHHhcCCCcEEEEeeCcceecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhh--cccCCCCchHHHHHH
Q psy17528 203 TILALAKRMKGLKSFVHVSTAYCNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNE--HIIGGKPNSYTLTKA 278 (366)
Q Consensus 203 ~ll~~a~~~~~~~~~v~iSS~~~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Y~~sK~ 278 (366)
++++++.+. ++++|||+||.++|+... ++.|+....| .++ .......+.|+.+|+
T Consensus 196 ~ll~aa~~~-~~~~~V~iSS~~v~~~~~~~~~~E~~~~~p--------------------~~~~~~~~~~~~~~Y~~sK~ 254 (478)
T 4dqv_A 196 ELIRIALTT-KLKPFTYVSTADVGAAIEPSAFTEDADIRV--------------------ISPTRTVDGGWAGGYGTSKW 254 (478)
T ss_dssp HHHHHHTSS-SCCCEEEEEEGGGGTTSCTTTCCSSSCHHH--------------------HCCEEECCTTSEECHHHHHH
T ss_pred HHHHHHHhC-CCCeEEEEeehhhcCccCCCCcCCcccccc--------------------cCcccccccccccchHHHHH
Confidence 999999886 788999999998886432 3334322111 111 112233477999999
Q ss_pred HHHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHh-cCcce-eecCC------CCcccCcccHH
Q psy17528 279 TAEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAG-TGLIR-VVQTD------PNISMDVVPGD 348 (366)
Q Consensus 279 ~~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~-~l~~~------~~~~~~~v~vd 348 (366)
.+|.+++++. .+++++++||++|||+.... +.......+..++.... .|... .++.. ++..++|+|++
T Consensus 255 ~~E~~~~~~~~~~gi~~~ivRpg~v~G~~~~~--g~~~~~~~~~~l~~~~~~~g~~P~~~~~~~~~G~~~~~~~~~v~vd 332 (478)
T 4dqv_A 255 AGEVLLREANDLCALPVAVFRCGMILADTSYA--GQLNMSDWVTRMVLSLMATGIAPRSFYEPDSEGNRQRAHFDGLPVT 332 (478)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEECEEECCSSSS--SCCCTTBHHHHHHHHHHHHCEEESCSBCCCTTSCCCCCCCCEEEHH
T ss_pred HHHHHHHHHHHHhCCCeEEEECceeeCCCccC--CcCCHHHHHHHHHHHHHHcCcccccccccccccccccceeeeeeHH
Confidence 9999999886 58999999999999985421 11110111233333333 23322 22211 26788999999
Q ss_pred HHHHHHHHHHHh
Q psy17528 349 RVINAMAALAWY 360 (366)
Q Consensus 349 Dva~ai~~~~~~ 360 (366)
|+|++++.++..
T Consensus 333 DvA~ai~~~~~~ 344 (478)
T 4dqv_A 333 FVAEAIAVLGAR 344 (478)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 999999999876
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-27 Score=225.90 Aligned_cols=216 Identities=14% Similarity=0.138 Sum_probs=160.5
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+|+|||||||||||++++++|++.| ++|++++|+.+... .+
T Consensus 13 ~M~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~---------------~l--------------------- 53 (342)
T 2x4g_A 13 HVKYAVLGATGLLGHHAARAIRAAG---HDLVLIHRPSSQIQ---------------RL--------------------- 53 (342)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEECTTSCGG---------------GG---------------------
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEecChHhhh---------------hh---------------------
Confidence 4699999999999999999999998 89999999764311 00
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh-hhhHHHHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF-DEHIRTAYNINVKGTQTILA 206 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~-~~~~~~~~~~nv~~~~~ll~ 206 (366)
...++.++.+|+.+.+ .+.++++++|+|||+|+.... ..+....+++|+.++.++++
T Consensus 54 ----------------~~~~~~~~~~Dl~d~~------~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~n~~~~~~l~~ 111 (342)
T 2x4g_A 54 ----------------AYLEPECRVAEMLDHA------GLERALRGLDGVIFSAGYYPSRPRRWQEEVASALGQTNPFYA 111 (342)
T ss_dssp ----------------GGGCCEEEECCTTCHH------HHHHHTTTCSEEEEC------------CHHHHHHHHHHHHHH
T ss_pred ----------------ccCCeEEEEecCCCHH------HHHHHHcCCCEEEECCccCcCCCCCHHHHHHHHHHHHHHHHH
Confidence 0126788999999876 788999999999999997542 34556788999999999999
Q ss_pred HHHhcCCCcEEEEeeCcceecCccc---cccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHH
Q psy17528 207 LAKRMKGLKSFVHVSTAYCNCDRKF---IAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDL 283 (366)
Q Consensus 207 ~a~~~~~~~~~v~iSS~~~~~~~~~---~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~ 283 (366)
++.+. ++++|||+||.++|+.... .+|+..+.|.. ...+.|+.+|+.+|.+
T Consensus 112 a~~~~-~~~~~v~~SS~~~~~~~~~~~~~~E~~~~~p~~-------------------------~~~~~Y~~sK~~~e~~ 165 (342)
T 2x4g_A 112 ACLQA-RVPRILYVGSAYAMPRHPQGLPGHEGLFYDSLP-------------------------SGKSSYVLCKWALDEQ 165 (342)
T ss_dssp HHHHH-TCSCEEEECCGGGSCCCTTSSCBCTTCCCSSCC-------------------------TTSCHHHHHHHHHHHH
T ss_pred HHHHc-CCCeEEEECCHHhhCcCCCCCCCCCCCCCCccc-------------------------cccChHHHHHHHHHHH
Confidence 99987 7889999999998865321 24443333200 0127899999999999
Q ss_pred HHHhc-CCCCEEEEecCccccCCC-CCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhh
Q psy17528 284 VRQVG-HELPICVLRPSIVFPTLQ-EPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 284 l~~~~-~gl~~~ilRp~~v~G~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
++.+. .+++++++||+.|||+.. .+ . ...++.....|....+ ++..++|+|++|+|++++.+++.+
T Consensus 166 ~~~~~~~g~~~~ilrp~~v~g~~~~~~--~-------~~~~~~~~~~~~~~~~---~~~~~~~i~v~Dva~~~~~~~~~~ 233 (342)
T 2x4g_A 166 AREQARNGLPVVIGIPGMVLGELDIGP--T-------TGRVITAIGNGEMTHY---VAGQRNVIDAAEAGRGLLMALERG 233 (342)
T ss_dssp HHHHHHTTCCEEEEEECEEECSCCSSC--S-------TTHHHHHHHTTCCCEE---ECCEEEEEEHHHHHHHHHHHHHHS
T ss_pred HHHHhhcCCcEEEEeCCceECCCCccc--c-------HHHHHHHHHcCCCccc---cCCCcceeeHHHHHHHHHHHHhCC
Confidence 98875 489999999999999976 21 1 1234455556655544 567889999999999999999876
Q ss_pred h
Q psy17528 362 L 362 (366)
Q Consensus 362 ~ 362 (366)
.
T Consensus 234 ~ 234 (342)
T 2x4g_A 234 R 234 (342)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=223.29 Aligned_cols=224 Identities=21% Similarity=0.185 Sum_probs=172.4
Q ss_pred CeEEEeCCcchHHHHHHHHHHHh-CCCc--cEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRC-CPQI--RKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~-g~~~--~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
|+|||||||||||++++++|++. |+++ ++|++++|....... + .+..
T Consensus 1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~-~------------~~~~----------------- 50 (337)
T 1r6d_A 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNR-A------------NLAP----------------- 50 (337)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCG-G------------GGGG-----------------
T ss_pred CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCch-h------------hhhh-----------------
Confidence 47999999999999999999995 4232 689999996532110 0 0000
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh---hhHHHHHHHHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD---EHIRTAYNINVKGTQ 202 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~---~~~~~~~~~nv~~~~ 202 (366)
. ....++.++.+|+.+.+ .+.+++.++|+|||+|+..... .++...+++|+.++.
T Consensus 51 ---------------~-~~~~~~~~~~~Dl~d~~------~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~ 108 (337)
T 1r6d_A 51 ---------------V-DADPRLRFVHGDIRDAG------LLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQ 108 (337)
T ss_dssp ---------------G-TTCTTEEEEECCTTCHH------HHHHHTTTCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHH
T ss_pred ---------------c-ccCCCeEEEEcCCCCHH------HHHHHhcCCCEEEECCCccCchhhhhCHHHHHHHHHHHHH
Confidence 0 01257889999999976 7888889999999999976533 345678899999999
Q ss_pred HHHHHHHhcCCCcEEEEeeCcceecCc--cccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHH
Q psy17528 203 TILALAKRMKGLKSFVHVSTAYCNCDR--KFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATA 280 (366)
Q Consensus 203 ~ll~~a~~~~~~~~~v~iSS~~~~~~~--~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~ 280 (366)
++++++.+. ++++|||+||.++|+.. .+++|+....|. +.|+.+|+.+
T Consensus 109 ~l~~a~~~~-~~~~~v~~SS~~vyg~~~~~~~~E~~~~~~~-----------------------------~~Y~~sK~~~ 158 (337)
T 1r6d_A 109 TLLQCAVDA-GVGRVVHVSTNQVYGSIDSGSWTESSPLEPN-----------------------------SPYAASKAGS 158 (337)
T ss_dssp HHHHHHHHT-TCCEEEEEEEGGGGCCCSSSCBCTTSCCCCC-----------------------------SHHHHHHHHH
T ss_pred HHHHHHHHc-CCCEEEEecchHHhCCCCCCCCCCCCCCCCC-----------------------------CchHHHHHHH
Confidence 999999987 78899999999888653 245554433332 7899999999
Q ss_pred HHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHH
Q psy17528 281 EDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALA 358 (366)
Q Consensus 281 E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~ 358 (366)
|.+++.+. .+++++++||++|||+...+. . .+..++.....+....++++++..++|+|++|+|++++.++
T Consensus 159 e~~~~~~~~~~g~~~~ilrp~~v~G~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~ 231 (337)
T 1r6d_A 159 DLVARAYHRTYGLDVRITRCCNNYGPYQHPE-K------LIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVL 231 (337)
T ss_dssp HHHHHHHHHHHCCCEEEEEECEEECTTCCTT-S------HHHHHHHHHHTTCCEEEETTSCCEEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeeeeECCCCCCC-C------hHHHHHHHHhcCCCcEEeCCCCeeEeeEeHHHHHHHHHHHH
Confidence 99998876 589999999999999986431 1 12345666677777777788888999999999999999998
Q ss_pred Hhh
Q psy17528 359 WYF 361 (366)
Q Consensus 359 ~~~ 361 (366)
+.+
T Consensus 232 ~~~ 234 (337)
T 1r6d_A 232 AGG 234 (337)
T ss_dssp HHC
T ss_pred hCC
Confidence 764
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=9.2e-27 Score=223.44 Aligned_cols=226 Identities=14% Similarity=0.044 Sum_probs=172.2
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+++|||||||||||++++++|++.| ++|++++|+...... .++..
T Consensus 14 ~~~vlVTGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~-~~~~~------------------------------- 58 (335)
T 1rpn_A 14 TRSALVTGITGQDGAYLAKLLLEKG---YRVHGLVARRSSDTR-WRLRE------------------------------- 58 (335)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCCSSCCC-HHHHH-------------------------------
T ss_pred CCeEEEECCCChHHHHHHHHHHHCC---CeEEEEeCCCccccc-cchhh-------------------------------
Confidence 6899999999999999999999998 899999998653211 11111
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhC--cCEEEEcCcccChh---hhHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQ--TTIIFHIAATVRFD---EHIRTAYNINVKGTQ 202 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~--~d~Vih~a~~~~~~---~~~~~~~~~nv~~~~ 202 (366)
. ....++.++.+|+.+.+ .+..++++ +|+|||+||..... .++...+++|+.++.
T Consensus 59 -------------~-~~~~~~~~~~~Dl~d~~------~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~ 118 (335)
T 1rpn_A 59 -------------L-GIEGDIQYEDGDMADAC------SVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVT 118 (335)
T ss_dssp -------------T-TCGGGEEEEECCTTCHH------HHHHHHHHHCCSEEEECCSCCCHHHHTTSHHHHHHHHTHHHH
T ss_pred -------------c-cccCceEEEECCCCCHH------HHHHHHHHcCCCEEEECccccchhhhhhChHHHHHHHHHHHH
Confidence 0 01246889999999876 78888874 69999999976542 456778999999999
Q ss_pred HHHHHHHhcCCC-cEEEEeeCcceecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHH
Q psy17528 203 TILALAKRMKGL-KSFVHVSTAYCNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKAT 279 (366)
Q Consensus 203 ~ll~~a~~~~~~-~~~v~iSS~~~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~ 279 (366)
++++++.+. ++ ++||++||.++|+... +++|+..+.|. +.|+.+|+.
T Consensus 119 ~l~~a~~~~-~~~~~~v~~SS~~v~g~~~~~~~~E~~~~~p~-----------------------------~~Y~~sK~~ 168 (335)
T 1rpn_A 119 HLLEAIRQF-SPETRFYQASTSEMFGLIQAERQDENTPFYPR-----------------------------SPYGVAKLY 168 (335)
T ss_dssp HHHHHHHHH-CTTSEEEEEEEGGGGCSCSSSSBCTTSCCCCC-----------------------------SHHHHHHHH
T ss_pred HHHHHHHHh-CCCCeEEEEeCHHHhCCCCCCCCCcccCCCCC-----------------------------ChhHHHHHH
Confidence 999999887 54 8999999998887533 45555444332 789999999
Q ss_pred HHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcc-eeecCCCCcccCcccHHHHHHHHHH
Q psy17528 280 AEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLI-RVVQTDPNISMDVVPGDRVINAMAA 356 (366)
Q Consensus 280 ~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~l~~~~~~~~~~v~vdDva~ai~~ 356 (366)
+|.+++.+. .+++++++||+++|||+... .+. ...+..++.....|.. ...+++++..++|+|++|+|++++.
T Consensus 169 ~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~--~~~--~~~~~~~~~~~~~g~~~~~~~g~g~~~~~~i~v~Dva~a~~~ 244 (335)
T 1rpn_A 169 GHWITVNYRESFGLHASSGILFNHESPLRGI--EFV--TRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWL 244 (335)
T ss_dssp HHHHHHHHHHHHCCCEEEEEECCEECTTSCT--TSH--HHHHHHHHHHHHTTSCSCEEESCTTCEEECEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcEEEEeeCcccCCCCCC--Ccc--hHHHHHHHHHHHcCCCceEEeCCCcceeceEEHHHHHHHHHH
Confidence 999998876 58999999999999997642 111 0112445555666653 3456788899999999999999999
Q ss_pred HHHhhh
Q psy17528 357 LAWYFL 362 (366)
Q Consensus 357 ~~~~~~ 362 (366)
+++.+.
T Consensus 245 ~~~~~~ 250 (335)
T 1rpn_A 245 MLQQDK 250 (335)
T ss_dssp HHHSSS
T ss_pred HHhcCC
Confidence 998653
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.9e-27 Score=222.19 Aligned_cols=218 Identities=23% Similarity=0.242 Sum_probs=167.8
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
|+||||||+||||++++++|++.| ++|++++|......
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G---~~V~~~~r~~~~~~--------------------------------------- 38 (311)
T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLARG---LEVAVLDNLATGKR--------------------------------------- 38 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTT---CEEEEECCCSSCCG---------------------------------------
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCC---CEEEEEECCCcCch---------------------------------------
Confidence 479999999999999999999998 88999988532110
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccChh---hhHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRFD---EHIRTAYNINVKGTQT 203 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~~---~~~~~~~~~nv~~~~~ 203 (366)
.....++.++.+|+.+.+ .+.++++ ++|+|||+|+..... .++...+++|+.++.+
T Consensus 39 -------------~~~~~~~~~~~~Dl~~~~------~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~N~~g~~~ 99 (311)
T 2p5y_A 39 -------------ENVPKGVPFFRVDLRDKE------GVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLN 99 (311)
T ss_dssp -------------GGSCTTCCEECCCTTCHH------HHHHHHHHHCCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHH
T ss_pred -------------hhcccCeEEEECCCCCHH------HHHHHHHhcCCCEEEECccccCchhhhhCHHHHHHHHHHHHHH
Confidence 001135678899999876 7778777 899999999976532 3556788999999999
Q ss_pred HHHHHHhcCCCcEEEEeeCc-ceecC-c--cccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHH
Q psy17528 204 ILALAKRMKGLKSFVHVSTA-YCNCD-R--KFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKAT 279 (366)
Q Consensus 204 ll~~a~~~~~~~~~v~iSS~-~~~~~-~--~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~ 279 (366)
+++++.+. ++++||++||. .+|+. . .+..|+..+.|. +.|+.+|..
T Consensus 100 l~~a~~~~-~~~~iv~~SS~~~~~g~~~~~~~~~E~~~~~~~-----------------------------~~Y~~sK~~ 149 (311)
T 2p5y_A 100 LLEACRQY-GVEKLVFASTGGAIYGEVPEGERAEETWPPRPK-----------------------------SPYAASKAA 149 (311)
T ss_dssp HHHHHHHT-TCSEEEEEEEHHHHHCCCCTTCCBCTTSCCCCC-----------------------------SHHHHHHHH
T ss_pred HHHHHHHh-CCCEEEEeCCChhhcCCCCCCCCcCCCCCCCCC-----------------------------ChHHHHHHH
Confidence 99999886 78899999998 77754 2 245555433332 789999999
Q ss_pred HHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeec-----CCCCcccCcccHHHHHH
Q psy17528 280 AEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQ-----TDPNISMDVVPGDRVIN 352 (366)
Q Consensus 280 ~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~-----~~~~~~~~~v~vdDva~ 352 (366)
+|.+++.+. .+++++++||++||||+..+... ...+..++.....+.+..++ +++...++|+|++|+|+
T Consensus 150 ~e~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~ 225 (311)
T 2p5y_A 150 FEHYLSVYGQSYGLKWVSLRYGNVYGPRQDPHGE----AGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAE 225 (311)
T ss_dssp HHHHHHHHHHHHCCCEEEEEECEEECTTCCSSST----THHHHHHHHHHHHTCCEEEECSSSTTSCCCEECEEEHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEeeccccCcCCCCCCc----CcHHHHHHHHHHcCCCcEEEecccCCCCCeEEeeEEHHHHHH
Confidence 999998765 68999999999999997643210 01123455556667766666 77888999999999999
Q ss_pred HHHHHHHhh
Q psy17528 353 AMAALAWYF 361 (366)
Q Consensus 353 ai~~~~~~~ 361 (366)
+++.+++.+
T Consensus 226 a~~~~~~~~ 234 (311)
T 2p5y_A 226 AHALALFSL 234 (311)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhCC
Confidence 999988754
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-27 Score=214.31 Aligned_cols=206 Identities=14% Similarity=0.066 Sum_probs=156.1
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+++|||||||||||++++++|++.| ++|++++|+.+..
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~--------------------------------------- 41 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRG---FEVTAVVRHPEKI--------------------------------------- 41 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTT---CEEEEECSCGGGC---------------------------------------
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCC---CEEEEEEcCcccc---------------------------------------
Confidence 5799999999999999999999998 8999999985421
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILAL 207 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll~~ 207 (366)
.....++.++.+|+.+.+ .+..+++++|+|||+|+... .....+++|+.++.+++++
T Consensus 42 --------------~~~~~~~~~~~~Dl~d~~------~~~~~~~~~d~vi~~a~~~~---~~~~~~~~n~~~~~~l~~~ 98 (227)
T 3dhn_A 42 --------------KIENEHLKVKKADVSSLD------EVCEVCKGADAVISAFNPGW---NNPDIYDETIKVYLTIIDG 98 (227)
T ss_dssp --------------CCCCTTEEEECCCTTCHH------HHHHHHTTCSEEEECCCC---------CCSHHHHHHHHHHHH
T ss_pred --------------hhccCceEEEEecCCCHH------HHHHHhcCCCEEEEeCcCCC---CChhHHHHHHHHHHHHHHH
Confidence 112368899999999977 89999999999999998642 1223678899999999999
Q ss_pred HHhcCCCcEEEEeeCcceecCcc-ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHH
Q psy17528 208 AKRMKGLKSFVHVSTAYCNCDRK-FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQ 286 (366)
Q Consensus 208 a~~~~~~~~~v~iSS~~~~~~~~-~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~ 286 (366)
+.+. ++++||++||..++.... ...++....| .+.|+.+|...|.+++.
T Consensus 99 ~~~~-~~~~~v~~Ss~~~~~~~~~~~~~~~~~~p-----------------------------~~~Y~~sK~~~e~~~~~ 148 (227)
T 3dhn_A 99 VKKA-GVNRFLMVGGAGSLFIAPGLRLMDSGEVP-----------------------------ENILPGVKALGEFYLNF 148 (227)
T ss_dssp HHHT-TCSEEEEECCSTTSEEETTEEGGGTTCSC-----------------------------GGGHHHHHHHHHHHHHT
T ss_pred HHHh-CCCEEEEeCChhhccCCCCCccccCCcch-----------------------------HHHHHHHHHHHHHHHHH
Confidence 9987 788999999987664322 2222221111 17899999999988887
Q ss_pred hc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhhhhc
Q psy17528 287 VG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYFLFS 364 (366)
Q Consensus 287 ~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~~~ 364 (366)
+. .+++++++||+.|||++..... + ..+....+. .++ .++|+|++|+|++++.+++++...
T Consensus 149 ~~~~~~~~~~ilrp~~v~g~~~~~~~-~--------------~~~~~~~~~-~~~-~~~~i~~~Dva~ai~~~l~~~~~~ 211 (227)
T 3dhn_A 149 LMKEKEIDWVFFSPAADMRPGVRTGR-Y--------------RLGKDDMIV-DIV-GNSHISVEDYAAAMIDELEHPKHH 211 (227)
T ss_dssp GGGCCSSEEEEEECCSEEESCCCCCC-C--------------EEESSBCCC-CTT-SCCEEEHHHHHHHHHHHHHSCCCC
T ss_pred HhhccCccEEEEeCCcccCCCccccc-e--------------eecCCCccc-CCC-CCcEEeHHHHHHHHHHHHhCcccc
Confidence 76 7899999999999999764311 1 011222222 222 289999999999999999988765
Q ss_pred C
Q psy17528 365 C 365 (366)
Q Consensus 365 ~ 365 (366)
|
T Consensus 212 g 212 (227)
T 3dhn_A 212 Q 212 (227)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-27 Score=236.78 Aligned_cols=245 Identities=19% Similarity=0.124 Sum_probs=171.1
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
...++++|||||||||||++++++|++.| ++|++++|+.......+++.+.+...+-.....
T Consensus 65 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g---~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~--------------- 126 (427)
T 4f6c_A 65 SHRPLGNTLLTGATGFLGAYLIEALQGYS---HRIYCFIRADNEEIAWYKLMTNLNDYFSEETVE--------------- 126 (427)
T ss_dssp CCCCCEEEEEECTTSHHHHHHHHHHTTTE---EEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHH---------------
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHHcCC---CEEEEEECCCChHHHHHHHHHHHHHhccccccc---------------
Confidence 34557899999999999999999998887 899999998765444555555444321000000
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHH
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQT 203 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ 203 (366)
....++.++.+|+.+.+ .+. .+.++|+|||+||.......+...+++|+.++.+
T Consensus 127 -------------------~~~~~v~~v~~Dl~d~~------~l~-~~~~~d~Vih~A~~~~~~~~~~~~~~~Nv~g~~~ 180 (427)
T 4f6c_A 127 -------------------MMLSNIEVIVGDFECMD------DVV-LPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVD 180 (427)
T ss_dssp -------------------HHHTTEEEEEECC---C------CCC-CSSCCSEEEECCCCC-------CHHHHHHHHHHH
T ss_pred -------------------cccCceEEEeCCCCCcc------cCC-CcCCCCEEEECCcccCCCCCHHHHHHHHHHHHHH
Confidence 01258899999999954 233 5678999999999887777788899999999999
Q ss_pred HHHHHHhcCCCcEEEEeeCcceecCc-------cccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHH
Q psy17528 204 ILALAKRMKGLKSFVHVSTAYCNCDR-------KFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLT 276 (366)
Q Consensus 204 ll~~a~~~~~~~~~v~iSS~~~~~~~-------~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~s 276 (366)
+++++.+ ++++|||+||.++ +.. .++.|+....+. ...+.|+.+
T Consensus 181 l~~aa~~--~~~~~v~~SS~~~-G~~~~~~~~~~~~~E~~~~~~~--------------------------~~~~~Y~~s 231 (427)
T 4f6c_A 181 VIRLAQQ--HHARLIYVSTISV-GTYFDIDTEDVTFSEADVYKGQ--------------------------LLTSPYTRS 231 (427)
T ss_dssp HHHHHHH--TTCEEEEEEEGGG-GSEECSSCSCCEECTTCSCSSC--------------------------CCCSHHHHH
T ss_pred HHHHHHh--cCCcEEEECchHh-CCCccCCCCCccccccccccCC--------------------------CCCCchHHH
Confidence 9999988 6789999999988 431 234444332111 123899999
Q ss_pred HHHHHHHHHHhc-CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHH
Q psy17528 277 KATAEDLVRQVG-HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMA 355 (366)
Q Consensus 277 K~~~E~~l~~~~-~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~ 355 (366)
|+.+|.+++++. .+++++++||++|||+..............+..++.....+...+. +.++..++|++++|+|++++
T Consensus 232 K~~~E~~~~~~~~~g~~~~ivRpg~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~v~DvA~ai~ 310 (427)
T 4f6c_A 232 KFYSELKVLEAVNNGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGV-SMAEMPVDFSFVDTTARQIV 310 (427)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECCEESCSSSCCCCTTGGGCHHHHHHHHHHHSSEEEH-HHHTCEECCEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCeeecCCCCCccccCcchHHHHHHHHHHHhcCCCCC-ccccceEEEeeHHHHHHHHH
Confidence 999999999977 7999999999999999875321111011123455666666555443 23578899999999999999
Q ss_pred HHHHhhh
Q psy17528 356 ALAWYFL 362 (366)
Q Consensus 356 ~~~~~~~ 362 (366)
.++..+.
T Consensus 311 ~~~~~~~ 317 (427)
T 4f6c_A 311 ALAQVNT 317 (427)
T ss_dssp HHTTSCC
T ss_pred HHHcCCC
Confidence 9987764
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-26 Score=220.18 Aligned_cols=214 Identities=14% Similarity=0.063 Sum_probs=161.4
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
|++|+|||||||||||++++++|++.| ++|+++.|+.
T Consensus 1 M~~~~ilVtGatG~iG~~l~~~L~~~g---~~v~~~~r~~---------------------------------------- 37 (321)
T 1e6u_A 1 MAKQRVFIAGHRGMVGSAIRRQLEQRG---DVELVLRTRD---------------------------------------- 37 (321)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCT---TEEEECCCTT----------------------------------------
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCC---CeEEEEecCc----------------------------------------
Confidence 346799999999999999999999998 7788776641
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccC----hhhhHHHHHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVR----FDEHIRTAYNINVK 199 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~----~~~~~~~~~~~nv~ 199 (366)
.+|+.+.+ .+..+++ ++|+|||+|+... ...+....+++|+.
T Consensus 38 --------------------------~~D~~d~~------~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~~n~~ 85 (321)
T 1e6u_A 38 --------------------------ELNLLDSR------AVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMM 85 (321)
T ss_dssp --------------------------TCCTTCHH------HHHHHHHHHCCSEEEECCCCCCCHHHHHHCHHHHHHHHHH
T ss_pred --------------------------cCCccCHH------HHHHHHHhcCCCEEEEcCeecCCcchhhhCHHHHHHHHHH
Confidence 25777765 7888888 8999999999764 23456778999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEeeCcceecCc--cccccccCCC-CCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHH
Q psy17528 200 GTQTILALAKRMKGLKSFVHVSTAYCNCDR--KFIAEKFYPP-VFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLT 276 (366)
Q Consensus 200 ~~~~ll~~a~~~~~~~~~v~iSS~~~~~~~--~~~~e~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~s 276 (366)
++.++++++.+. ++++|||+||.++|+.. .++.|+.... +..+ ..+.|+.+
T Consensus 86 ~~~~l~~~~~~~-~~~~~v~~SS~~vyg~~~~~~~~E~~~~~~~~~p-------------------------~~~~Y~~s 139 (321)
T 1e6u_A 86 IESNIIHAAHQN-DVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEP-------------------------TNEPYAIA 139 (321)
T ss_dssp HHHHHHHHHHHT-TCCEEEEECCGGGSCTTCCSSBCGGGTTSSCCCG-------------------------GGHHHHHH
T ss_pred HHHHHHHHHHHh-CCCeEEEEccHHHcCCCCCCCcCccccccCCCCC-------------------------CCCccHHH
Confidence 999999999986 78899999999998753 2444543210 1101 01489999
Q ss_pred HHHHHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhc----C-cceeecCCCCcccCcccHHH
Q psy17528 277 KATAEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGT----G-LIRVVQTDPNISMDVVPGDR 349 (366)
Q Consensus 277 K~~~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~----g-~~~~l~~~~~~~~~~v~vdD 349 (366)
|+.+|++++.+. .+++++++||+.|||++..+..... ..+..++..... | ....++++++..++|+|++|
T Consensus 140 K~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~i~v~D 216 (321)
T 1e6u_A 140 KIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNS---HVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDD 216 (321)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCS---SHHHHHHHHHHHHHHHTCSEEEEESCSCCEECEEEHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCcCCcCCCCCCCCC---ccHHHHHHHHHHhhhcCCCceEEcCCCCEEEEeEEHHH
Confidence 999999998875 5899999999999999875321100 112334444432 3 45566778889999999999
Q ss_pred HHHHHHHHHHhhhh
Q psy17528 350 VINAMAALAWYFLF 363 (366)
Q Consensus 350 va~ai~~~~~~~~~ 363 (366)
+|++++.+++++..
T Consensus 217 va~~~~~~~~~~~~ 230 (321)
T 1e6u_A 217 MAAASIHVMELAHE 230 (321)
T ss_dssp HHHHHHHHHHSCHH
T ss_pred HHHHHHHHHhCccc
Confidence 99999999987643
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-26 Score=221.60 Aligned_cols=222 Identities=19% Similarity=0.224 Sum_probs=169.1
Q ss_pred CeEEEeCCcchHHHHHHHHHHHh-CCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRC-CPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~-g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
|+||||||+||||++++++|++. | ++|++++|+...... + .+..
T Consensus 1 MkvlVTGasG~iG~~l~~~L~~~~g---~~V~~~~r~~~~~~~-~------------~~~~------------------- 45 (361)
T 1kew_A 1 MKILITGGAGFIGSAVVRHIIKNTQ---DTVVNIDKLTYAGNL-E------------SLSD------------------- 45 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCS---CEEEEEECCCTTCCG-G------------GGTT-------------------
T ss_pred CEEEEECCCchHhHHHHHHHHhcCC---CeEEEEecCCCCCch-h------------hhhh-------------------
Confidence 47999999999999999999998 6 789999997521110 0 0000
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccChh---hhHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRFD---EHIRTAYNINVKGTQ 202 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~~---~~~~~~~~~nv~~~~ 202 (366)
. ....++.++.+|+.+.+ .+..+++ ++|+|||+||..... .++...+++|+.++.
T Consensus 46 -------------~-~~~~~~~~~~~Dl~d~~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~ 105 (361)
T 1kew_A 46 -------------I-SESNRYNFEHADICDSA------EITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTY 105 (361)
T ss_dssp -------------T-TTCTTEEEEECCTTCHH------HHHHHHHHHCCSEEEECCSCCCHHHHHHCTHHHHHHHTHHHH
T ss_pred -------------h-hcCCCeEEEECCCCCHH------HHHHHHhhcCCCEEEECCCCcChhhhhhCHHHHHHHHHHHHH
Confidence 0 01357899999999976 7888887 899999999976532 345678999999999
Q ss_pred HHHHHHHhc-CCCc-------EEEEeeCcceecCcc------------ccccccCCCCCChHHHHHHhhhcchHHHHhhh
Q psy17528 203 TILALAKRM-KGLK-------SFVHVSTAYCNCDRK------------FIAEKFYPPVFTAEELSALVAHASDEEIALLN 262 (366)
Q Consensus 203 ~ll~~a~~~-~~~~-------~~v~iSS~~~~~~~~------------~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 262 (366)
++++++.+. .+++ +||++||.++|+... +++|+....|
T Consensus 106 ~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~~~~~~E~~~~~~---------------------- 163 (361)
T 1kew_A 106 ALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAP---------------------- 163 (361)
T ss_dssp HHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCTTSCCCC----------------------
T ss_pred HHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccccccccccCCCCCCCCCCCC----------------------
Confidence 999998864 1455 999999998886532 3333322222
Q ss_pred hcccCCCCchHHHHHHHHHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCc
Q psy17528 263 EHIIGGKPNSYTLTKATAEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNI 340 (366)
Q Consensus 263 ~~~~~~~~~~Y~~sK~~~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~ 340 (366)
.+.|+.+|+.+|.+++.+. .+++++++||+.|||+...+. . .+..++.....+....+++++..
T Consensus 164 -------~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~ 229 (361)
T 1kew_A 164 -------SSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPE-K------LIPLVILNALEGKPLPIYGKGDQ 229 (361)
T ss_dssp -------CSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTT-S------HHHHHHHHHHHTCCEEEETTSCC
T ss_pred -------CCccHHHHHHHHHHHHHHHHHhCCcEEEEeeceeECCCCCcc-c------HHHHHHHHHHcCCCceEcCCCce
Confidence 2789999999999998876 589999999999999986431 1 12345566667777777778888
Q ss_pred ccCcccHHHHHHHHHHHHHhh
Q psy17528 341 SMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 341 ~~~~v~vdDva~ai~~~~~~~ 361 (366)
.++|+|++|+|++++.+++..
T Consensus 230 ~~~~i~v~Dva~a~~~~~~~~ 250 (361)
T 1kew_A 230 IRDWLYVEDHARALHMVVTEG 250 (361)
T ss_dssp EEEEEEHHHHHHHHHHHHHHC
T ss_pred eEeeEEHHHHHHHHHHHHhCC
Confidence 999999999999999998764
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-27 Score=222.13 Aligned_cols=198 Identities=17% Similarity=0.077 Sum_probs=156.2
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
|++|+||||| +||||++|+++|++.| ++|++++|+.+.
T Consensus 1 M~~~~ilVtG-aG~iG~~l~~~L~~~g---~~V~~~~r~~~~-------------------------------------- 38 (286)
T 3gpi_A 1 MSLSKILIAG-CGDLGLELARRLTAQG---HEVTGLRRSAQP-------------------------------------- 38 (286)
T ss_dssp -CCCCEEEEC-CSHHHHHHHHHHHHTT---CCEEEEECTTSC--------------------------------------
T ss_pred CCCCcEEEEC-CCHHHHHHHHHHHHCC---CEEEEEeCCccc--------------------------------------
Confidence 4578999999 5999999999999998 789999997542
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhC-cCEEEEcCcccChhhhHHHHHHHHHHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQ-TTIIFHIAATVRFDEHIRTAYNINVKGTQTI 204 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~-~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~l 204 (366)
...++.++.+|+.+.+ .+..++++ +|+|||+|+.. .......+++|+.++.++
T Consensus 39 ------------------~~~~~~~~~~Dl~d~~------~~~~~~~~~~d~vih~a~~~--~~~~~~~~~~n~~~~~~l 92 (286)
T 3gpi_A 39 ------------------MPAGVQTLIADVTRPD------TLASIVHLRPEILVYCVAAS--EYSDEHYRLSYVEGLRNT 92 (286)
T ss_dssp ------------------CCTTCCEEECCTTCGG------GCTTGGGGCCSEEEECHHHH--HHC-----CCSHHHHHHH
T ss_pred ------------------cccCCceEEccCCChH------HHHHhhcCCCCEEEEeCCCC--CCCHHHHHHHHHHHHHHH
Confidence 1257889999999987 66777776 99999999863 245567788899999999
Q ss_pred HHHHHhcCCCcEEEEeeCcceecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHH
Q psy17528 205 LALAKRMKGLKSFVHVSTAYCNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAED 282 (366)
Q Consensus 205 l~~a~~~~~~~~~v~iSS~~~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~ 282 (366)
++++.+. ++++|||+||+++|+... +++|+..+.|. +.|+.+|+.+|+
T Consensus 93 l~a~~~~-~~~~~v~~SS~~vyg~~~~~~~~E~~~~~p~-----------------------------~~Y~~sK~~~E~ 142 (286)
T 3gpi_A 93 LSALEGA-PLQHVFFVSSTGVYGQEVEEWLDEDTPPIAK-----------------------------DFSGKRMLEAEA 142 (286)
T ss_dssp HHHTTTS-CCCEEEEEEEGGGCCCCCSSEECTTSCCCCC-----------------------------SHHHHHHHHHHH
T ss_pred HHHHhhC-CCCEEEEEcccEEEcCCCCCCCCCCCCCCCC-----------------------------ChhhHHHHHHHH
Confidence 9999875 789999999999987543 45666544443 789999999999
Q ss_pred HHHHhcCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhh
Q psy17528 283 LVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 283 ~l~~~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
+ ++. ++++++||++|||++.. .++..+.. . ...++++..++|+|++|+|++++.+++.+
T Consensus 143 ~-~~~---~~~~ilR~~~v~G~~~~-------------~~~~~~~~-~--~~~~~~~~~~~~i~v~Dva~~~~~~~~~~ 201 (286)
T 3gpi_A 143 L-LAA---YSSTILRFSGIYGPGRL-------------RMIRQAQT-P--EQWPARNAWTNRIHRDDGAAFIAYLIQQR 201 (286)
T ss_dssp H-GGG---SSEEEEEECEEEBTTBC-------------HHHHHTTC-G--GGSCSSBCEECEEEHHHHHHHHHHHHHHH
T ss_pred H-Hhc---CCeEEEecccccCCCch-------------hHHHHHHh-c--ccCCCcCceeEEEEHHHHHHHHHHHHhhh
Confidence 9 654 89999999999999763 13333334 2 22467788999999999999999999885
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-27 Score=240.42 Aligned_cols=242 Identities=19% Similarity=0.128 Sum_probs=170.6
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
.+++|||||||||||++|+++|++.| ++|++++|+.......+++.+.+...+......
T Consensus 149 ~~~~VLVTGatG~iG~~l~~~L~~~g---~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~------------------ 207 (508)
T 4f6l_B 149 PLGNTLLTGATGFLGAYLIEALQGYS---HRIYCFIRADNEEIAWYKLMTNLNDYFSEETVE------------------ 207 (508)
T ss_dssp CCEEEEESCTTSHHHHHHHHHTBTTE---EEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHH------------------
T ss_pred CCCeEEEECCccchHHHHHHHHHhcC---CEEEEEECCCChHHHHHHHHHHHHHhcccccch------------------
Confidence 35799999999999999999998877 899999998765444455555443321110000
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILA 206 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll~ 206 (366)
....++.++.+|+.+.. .+. ...++|+|||+|+...+...+..++++|+.++.++++
T Consensus 208 ----------------~~~~~v~~v~~Dl~d~~------~l~-~~~~~D~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~ 264 (508)
T 4f6l_B 208 ----------------MMLSNIEVIVGDFECMD------DVV-LPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIR 264 (508)
T ss_dssp ----------------HHSTTEEEEEEBTTBCS------SCC-CSSCCSEEEECCCC--------CCHHHHHHHHHHHHH
T ss_pred ----------------hccCceEEEecCCcccc------cCC-CccCCCEEEECCceecCCCCHHHHhhhHHHHHHHHHH
Confidence 11368999999999944 222 5678999999999887777778889999999999999
Q ss_pred HHHhcCCCcEEEEeeCcceecCc-------cccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHH
Q psy17528 207 LAKRMKGLKSFVHVSTAYCNCDR-------KFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKAT 279 (366)
Q Consensus 207 ~a~~~~~~~~~v~iSS~~~~~~~-------~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~ 279 (366)
++.+ ..++|||+||.++ +.. .++.|.....+. ...+.|+.+|+.
T Consensus 265 ~a~~--~~~~~v~iSS~~v-G~~~~~~~~~~~~~E~~~~~~~--------------------------~~~~~Y~~sK~~ 315 (508)
T 4f6l_B 265 LAQQ--HHARLIYVSTISV-GTYFDIDTEDVTFSEADVYKGQ--------------------------LLTSPYTRSKFY 315 (508)
T ss_dssp HHHT--TTCEEEEEEESCT-TSEECTTCSCCEECTTCSCSSB--------------------------CCCSHHHHHHHH
T ss_pred HHHh--CCCcEEEeCChhh-ccCCccCCcCcccccccccccc--------------------------cCCCcHHHHHHH
Confidence 9987 5689999999988 321 133343321111 123899999999
Q ss_pred HHHHHHHhc-CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHH
Q psy17528 280 AEDLVRQVG-HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALA 358 (366)
Q Consensus 280 ~E~~l~~~~-~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~ 358 (366)
+|++++++. .|++++++||++|||+..............+..++.....+...+. +.++..++|+|++|+|++++.++
T Consensus 316 ~E~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~g~~~~~~v~v~DvA~ai~~~~ 394 (508)
T 4f6l_B 316 SELKVLEAVNNGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGV-SMAEMPVDFSFVDTTARQIVALA 394 (508)
T ss_dssp HHHHHHHHHHTTCEEEEEEECCEESCSSSCCCCTTCTTCHHHHHHHHHTTCSEEET-TGGGSEEECEEHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCEEEEecceeccCCCCCcccCCcchHHHHHHHHHHHHcCCCCC-CccCceEEEEcHHHHHHHHHHHH
Confidence 999999977 7999999999999999865321101111123456666666554443 34678999999999999999998
Q ss_pred Hhhh
Q psy17528 359 WYFL 362 (366)
Q Consensus 359 ~~~~ 362 (366)
..+.
T Consensus 395 ~~~~ 398 (508)
T 4f6l_B 395 QVNT 398 (508)
T ss_dssp TBCC
T ss_pred hCCC
Confidence 8764
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.2e-26 Score=220.58 Aligned_cols=215 Identities=18% Similarity=0.177 Sum_probs=166.4
Q ss_pred CCCcccccCCCCeEEEeCCcchHHHHHHHHHHHh-CCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCc
Q psy17528 38 TLSPIQEFYKDQTIFITGATGFLGSLLVEKLLRC-CPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADK 116 (366)
Q Consensus 38 ~~~~~~~~~~~~~ilItGatG~IG~~lv~~Ll~~-g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 116 (366)
+++++.+.+++|+|||||||||||++++++|++. |. ++|++++|+... .+.+.+.+
T Consensus 11 ~~~~~~~~~~~k~vlVTGatG~iG~~l~~~L~~~~g~--~~V~~~~r~~~~---~~~~~~~~------------------ 67 (344)
T 2gn4_A 11 SMPNHQNMLDNQTILITGGTGSFGKCFVRKVLDTTNA--KKIIVYSRDELK---QSEMAMEF------------------ 67 (344)
T ss_dssp -----CCTTTTCEEEEETTTSHHHHHHHHHHHHHCCC--SEEEEEESCHHH---HHHHHHHH------------------
T ss_pred CCccHHHhhCCCEEEEECCCcHHHHHHHHHHHhhCCC--CEEEEEECChhh---HHHHHHHh------------------
Confidence 3566777788999999999999999999999999 72 399999997421 11111110
Q ss_pred cccccccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh---hhhHHHH
Q psy17528 117 VDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF---DEHIRTA 193 (366)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~---~~~~~~~ 193 (366)
. ..++.++.+|+.|.+ .+.++++++|+|||+||.... ...+.+.
T Consensus 68 -------------------------~--~~~v~~~~~Dl~d~~------~l~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~ 114 (344)
T 2gn4_A 68 -------------------------N--DPRMRFFIGDVRDLE------RLNYALEGVDICIHAAALKHVPIAEYNPLEC 114 (344)
T ss_dssp -------------------------C--CTTEEEEECCTTCHH------HHHHHTTTCSEEEECCCCCCHHHHHHSHHHH
T ss_pred -------------------------c--CCCEEEEECCCCCHH------HHHHHHhcCCEEEECCCCCCCCchhcCHHHH
Confidence 0 157899999999977 788999999999999997653 2345678
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchH
Q psy17528 194 YNINVKGTQTILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSY 273 (366)
Q Consensus 194 ~~~nv~~~~~ll~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 273 (366)
+++|+.++.++++++.+. ++++||++||..++. | .+.|
T Consensus 115 ~~~Nv~gt~~l~~aa~~~-~v~~~V~~SS~~~~~------------p-----------------------------~~~Y 152 (344)
T 2gn4_A 115 IKTNIMGASNVINACLKN-AISQVIALSTDKAAN------------P-----------------------------INLY 152 (344)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCSEEEEECCGGGSS------------C-----------------------------CSHH
T ss_pred HHHHHHHHHHHHHHHHhC-CCCEEEEecCCccCC------------C-----------------------------ccHH
Confidence 999999999999999987 789999999975431 1 1789
Q ss_pred HHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCc-ceeecCCCCcccCcccH
Q psy17528 274 TLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGL-IRVVQTDPNISMDVVPG 347 (366)
Q Consensus 274 ~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~l~~~~~~~~~~v~v 347 (366)
+.+|+.+|.+++.+. .+++++++||++|||++.. .+..++.....|. +..+. +++..++|+++
T Consensus 153 ~~sK~~~E~~~~~~~~~~~~~g~~~~~vRpg~v~g~~~~----------~i~~~~~~~~~g~~~~~i~-~~~~~r~~i~v 221 (344)
T 2gn4_A 153 GATKLCSDKLFVSANNFKGSSQTQFSVVRYGNVVGSRGS----------VVPFFKKLVQNKASEIPIT-DIRMTRFWITL 221 (344)
T ss_dssp HHHHHHHHHHHHHGGGCCCSSCCEEEEECCCEETTCTTS----------HHHHHHHHHHHTCCCEEES-CTTCEEEEECH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcEEEEEEeccEECCCCC----------HHHHHHHHHHcCCCceEEe-CCCeEEeeEEH
Confidence 999999999998876 4799999999999998642 1123444555666 55554 67788999999
Q ss_pred HHHHHHHHHHHHhh
Q psy17528 348 DRVINAMAALAWYF 361 (366)
Q Consensus 348 dDva~ai~~~~~~~ 361 (366)
+|+|++++.+++.+
T Consensus 222 ~D~a~~v~~~l~~~ 235 (344)
T 2gn4_A 222 DEGVSFVLKSLKRM 235 (344)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999998865
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4e-26 Score=217.37 Aligned_cols=214 Identities=19% Similarity=0.153 Sum_probs=165.3
Q ss_pred eEEEeCCcchHHHHHHHHHHHh--CCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 50 TIFITGATGFLGSLLVEKLLRC--CPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 50 ~ilItGatG~IG~~lv~~Ll~~--g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+|||||||||||++++++|++. | ++|++++|+....
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g---~~V~~~~r~~~~~--------------------------------------- 38 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGK---KNVIASDIVQRDT--------------------------------------- 38 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCG---GGEEEEESSCCCC---------------------------------------
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCC---CEEEEecCCCccc---------------------------------------
Confidence 5899999999999999999998 6 7899999874321
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccCh--hhhHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRF--DEHIRTAYNINVKGTQT 203 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~--~~~~~~~~~~nv~~~~~ 203 (366)
..+.++.+|+.+.+ .+.++++ ++|+|||+|+.... ..++...+++|+.++.+
T Consensus 39 ------------------~~~~~~~~D~~d~~------~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~n~~~~~~ 94 (317)
T 3ajr_A 39 ------------------GGIKFITLDVSNRD------EIDRAVEKYSIDAIFHLAGILSAKGEKDPALAYKVNMNGTYN 94 (317)
T ss_dssp ------------------TTCCEEECCTTCHH------HHHHHHHHTTCCEEEECCCCCHHHHHHCHHHHHHHHHHHHHH
T ss_pred ------------------cCceEEEecCCCHH------HHHHHHhhcCCcEEEECCcccCCccccChHHHhhhhhHHHHH
Confidence 14568899999876 7888887 89999999997542 24567789999999999
Q ss_pred HHHHHHhcCCCcEEEEeeCcceecCcc---ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHH
Q psy17528 204 ILALAKRMKGLKSFVHVSTAYCNCDRK---FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATA 280 (366)
Q Consensus 204 ll~~a~~~~~~~~~v~iSS~~~~~~~~---~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~ 280 (366)
+++++.+. ++++||++||..+|+... +..|...+.| .+.|+.+|+.+
T Consensus 95 l~~a~~~~-~~~~~v~~SS~~~~~~~~~~~~~~e~~~~~p-----------------------------~~~Y~~sK~~~ 144 (317)
T 3ajr_A 95 ILEAAKQH-RVEKVVIPSTIGVFGPETPKNKVPSITITRP-----------------------------RTMFGVTKIAA 144 (317)
T ss_dssp HHHHHHHT-TCCEEEEEEEGGGCCTTSCSSSBCSSSCCCC-----------------------------CSHHHHHHHHH
T ss_pred HHHHHHHc-CCCEEEEecCHHHhCCCCCCCCccccccCCC-----------------------------CchHHHHHHHH
Confidence 99999986 788999999999887532 3334333222 27899999999
Q ss_pred HHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHH
Q psy17528 281 EDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALA 358 (366)
Q Consensus 281 E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~ 358 (366)
|.+++.+. .+++++++||+.+||+...+..... ......+.....+.....+++++..++|+|++|+|++++.++
T Consensus 145 e~~~~~~~~~~~~~~~~lR~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l 221 (317)
T 3ajr_A 145 ELLGQYYYEKFGLDVRSLRYPGIISYKAEPTAGTT---DYAVEIFYYAVKREKYKCYLAPNRALPMMYMPDALKALVDLY 221 (317)
T ss_dssp HHHHHHHHHHHCCEEEEEEECEEECSSSCCCSCSS---THHHHHHHHHHTTCCEEECSCTTCCEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEEecCcEeccCCCCCCcch---hHHHHHHHHHHhCCCceeecCccceeeeeEHHHHHHHHHHHH
Confidence 99998765 6899999999999998764432211 112333444454444555667788899999999999999999
Q ss_pred Hhhh
Q psy17528 359 WYFL 362 (366)
Q Consensus 359 ~~~~ 362 (366)
+++.
T Consensus 222 ~~~~ 225 (317)
T 3ajr_A 222 EADR 225 (317)
T ss_dssp HCCG
T ss_pred hCCc
Confidence 8764
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.2e-26 Score=217.66 Aligned_cols=228 Identities=16% Similarity=0.060 Sum_probs=169.8
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
|++|+|||||||||||++++++|++.| ++|++++|+...... +++...
T Consensus 1 m~~~~vlVtGatG~iG~~l~~~L~~~G---~~V~~~~r~~~~~~~-~~~~~~---------------------------- 48 (345)
T 2z1m_A 1 MSGKRALITGIRGQDGAYLAKLLLEKG---YEVYGADRRSGEFAS-WRLKEL---------------------------- 48 (345)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEECSCCSTTTT-HHHHHT----------------------------
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEECCCccccc-ccHhhc----------------------------
Confidence 457899999999999999999999998 899999998653221 111110
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhC--cCEEEEcCcccChh---hhHHHHHHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQ--TTIIFHIAATVRFD---EHIRTAYNINVKG 200 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~--~d~Vih~a~~~~~~---~~~~~~~~~nv~~ 200 (366)
. ...++.++.+|+.+.+ .+.+++++ +|+|||+||..... .++...+++|+.+
T Consensus 49 ---------------~--~~~~~~~~~~Dl~d~~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g 105 (345)
T 2z1m_A 49 ---------------G--IENDVKIIHMDLLEFS------NIIRTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIG 105 (345)
T ss_dssp ---------------T--CTTTEEECCCCTTCHH------HHHHHHHHHCCSEEEECCCCCCHHHHTTSHHHHHHHHTHH
T ss_pred ---------------c--ccCceeEEECCCCCHH------HHHHHHHhcCCCEEEECCCCcchhhhhhCHHHHHHHHHHH
Confidence 0 0246889999999876 78888775 69999999976532 4567789999999
Q ss_pred HHHHHHHHHhcCCC-cEEEEeeCcceecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHH
Q psy17528 201 TQTILALAKRMKGL-KSFVHVSTAYCNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTK 277 (366)
Q Consensus 201 ~~~ll~~a~~~~~~-~~~v~iSS~~~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK 277 (366)
+.++++++.+. ++ ++||++||.++|+... ++.|.....| .+.|+.+|
T Consensus 106 ~~~l~~a~~~~-~~~~~iv~~SS~~vyg~~~~~~~~e~~~~~~-----------------------------~~~Y~~sK 155 (345)
T 2z1m_A 106 VLRILEALRTV-KPDTKFYQASTSEMFGKVQEIPQTEKTPFYP-----------------------------RSPYAVAK 155 (345)
T ss_dssp HHHHHHHHHHH-CTTCEEEEEEEGGGGCSCSSSSBCTTSCCCC-----------------------------CSHHHHHH
T ss_pred HHHHHHHHHHh-CCCceEEEEechhhcCCCCCCCCCccCCCCC-----------------------------CChhHHHH
Confidence 99999999886 55 8999999998887533 3444433332 27899999
Q ss_pred HHHHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcc-eeecCCCCcccCcccHHHHHHHH
Q psy17528 278 ATAEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLI-RVVQTDPNISMDVVPGDRVINAM 354 (366)
Q Consensus 278 ~~~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~l~~~~~~~~~~v~vdDva~ai 354 (366)
+.+|.+++.+. .+++++++|++++|||+..... . ...+..++.....+.. ....++++..++|+|++|+|+++
T Consensus 156 ~~~e~~~~~~~~~~~~~~~~~r~~~~~gpg~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Dva~a~ 231 (345)
T 2z1m_A 156 LFGHWITVNYREAYNMFACSGILFNHESPLRGIEF--V--TRKITYSLARIKYGLQDKLVLGNLNAKRDWGYAPEYVEAM 231 (345)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTS--H--HHHHHHHHHHHHTTSCSCEEESCTTCEECCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCceEeeeeeeecCCCCCCcc--h--hHHHHHHHHHHHcCCCCeeeeCCCCceeeeEEHHHHHHHH
Confidence 99999998876 5899999999999999753211 0 0112333444555543 33566778889999999999999
Q ss_pred HHHHHhhh
Q psy17528 355 AALAWYFL 362 (366)
Q Consensus 355 ~~~~~~~~ 362 (366)
+.+++.+.
T Consensus 232 ~~~~~~~~ 239 (345)
T 2z1m_A 232 WLMMQQPE 239 (345)
T ss_dssp HHHHTSSS
T ss_pred HHHHhCCC
Confidence 99987653
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.4e-27 Score=222.33 Aligned_cols=216 Identities=19% Similarity=0.152 Sum_probs=160.1
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++|||||||||||++++++|++.| ++|++++|+....... ...+..
T Consensus 5 ~~~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~-----------~~~~~~----------------- 53 (321)
T 3vps_A 5 TLKHRILITGGAGFIGGHLARALVASG---EEVTVLDDLRVPPMIP-----------PEGTGK----------------- 53 (321)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTT---CCEEEECCCSSCCSSC-----------CTTSSE-----------------
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHCC---CEEEEEecCCcccccc-----------hhhhhh-----------------
Confidence 347899999999999999999999998 7899999976421000 000000
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh---hhHHHHHHHHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD---EHIRTAYNINVKGTQ 202 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~---~~~~~~~~~nv~~~~ 202 (366)
......+.++.+|+. ++|+|||+|+..... ......++ |+.++.
T Consensus 54 ----------------~~~~~~~~~~~~Dl~----------------~~d~vi~~a~~~~~~~~~~~~~~~~~-n~~~~~ 100 (321)
T 3vps_A 54 ----------------FLEKPVLELEERDLS----------------DVRLVYHLASHKSVPRSFKQPLDYLD-NVDSGR 100 (321)
T ss_dssp ----------------EECSCGGGCCHHHHT----------------TEEEEEECCCCCCHHHHTTSTTTTHH-HHHHHH
T ss_pred ----------------hccCCCeeEEeCccc----------------cCCEEEECCccCChHHHHhCHHHHHH-HHHHHH
Confidence 000012223333332 799999999976532 23344566 999999
Q ss_pred HHHHHHHhcCCCcEEEEeeCcceecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHH
Q psy17528 203 TILALAKRMKGLKSFVHVSTAYCNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATA 280 (366)
Q Consensus 203 ~ll~~a~~~~~~~~~v~iSS~~~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~ 280 (366)
++++++.+. ++++|||+||.++|+... ++.|+....|. +.|+.+|+.+
T Consensus 101 ~ll~a~~~~-~v~~~v~~SS~~v~~~~~~~~~~E~~~~~p~-----------------------------~~Y~~sK~~~ 150 (321)
T 3vps_A 101 HLLALCTSV-GVPKVVVGSTCEVYGQADTLPTPEDSPLSPR-----------------------------SPYAASKVGL 150 (321)
T ss_dssp HHHHHHHHH-TCCEEEEEEEGGGGCSCSSSSBCTTSCCCCC-----------------------------SHHHHHHHHH
T ss_pred HHHHHHHHc-CCCeEEEecCHHHhCCCCCCCCCCCCCCCCC-----------------------------ChhHHHHHHH
Confidence 999999987 689999999999887533 56666544443 8899999999
Q ss_pred HHHHHHhc--CCC-CEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHH
Q psy17528 281 EDLVRQVG--HEL-PICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAAL 357 (366)
Q Consensus 281 E~~l~~~~--~gl-~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~ 357 (366)
|++++.+. .++ +++++||++||||+..+. ..+..++.....+....++++++..++|+|++|+|++++.+
T Consensus 151 E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~ 223 (321)
T 3vps_A 151 EMVAGAHQRASVAPEVGIVRFFNVYGPGERPD-------ALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVVDKLVAL 223 (321)
T ss_dssp HHHHHHHHHSSSSCEEEEEEECEEECTTCCTT-------SHHHHHHHHHHHHSEEEEETTSCCEECEEEHHHHHHHHHHG
T ss_pred HHHHHHHHHHcCCCceEEEEeccccCcCCCCC-------ChHHHHHHHHHcCCCeEEeCCCCceEceEEHHHHHHHHHHH
Confidence 99999987 688 999999999999987541 11345666777777777888889999999999999999999
Q ss_pred HHhhh
Q psy17528 358 AWYFL 362 (366)
Q Consensus 358 ~~~~~ 362 (366)
+..+.
T Consensus 224 ~~~~~ 228 (321)
T 3vps_A 224 ANRPL 228 (321)
T ss_dssp GGSCC
T ss_pred HhcCC
Confidence 88754
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.1e-26 Score=218.05 Aligned_cols=217 Identities=20% Similarity=0.177 Sum_probs=164.3
Q ss_pred CCcccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccc
Q psy17528 39 LSPIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVD 118 (366)
Q Consensus 39 ~~~~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 118 (366)
.+...+.+++|+||||||+||||++++++|++.| ++|++++|+...... +
T Consensus 11 ~~~~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~---------------~------------ 60 (330)
T 2pzm_A 11 SSGLVPRGSHMRILITGGAGCLGSNLIEHWLPQG---HEILVIDNFATGKRE---------------V------------ 60 (330)
T ss_dssp ---CCSTTTCCEEEEETTTSHHHHHHHHHHGGGT---CEEEEEECCSSSCGG---------------G------------
T ss_pred ccCCcccCCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEECCCccchh---------------h------------
Confidence 3444566778999999999999999999999998 899999996532100 0
Q ss_pred cccccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccCh--hhhHHHHH
Q psy17528 119 IGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRF--DEHIRTAY 194 (366)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~--~~~~~~~~ 194 (366)
... ..++.++.+|+.+.+ .+..+++ ++|+|||+||.... ..++. +
T Consensus 61 ----------------------~~~-l~~v~~~~~Dl~d~~------~~~~~~~~~~~D~vih~A~~~~~~~~~~~~--~ 109 (330)
T 2pzm_A 61 ----------------------LPP-VAGLSVIEGSVTDAG------LLERAFDSFKPTHVVHSAAAYKDPDDWAED--A 109 (330)
T ss_dssp ----------------------SCS-CTTEEEEECCTTCHH------HHHHHHHHHCCSEEEECCCCCSCTTCHHHH--H
T ss_pred ----------------------hhc-cCCceEEEeeCCCHH------HHHHHHhhcCCCEEEECCccCCCccccChh--H
Confidence 000 147889999999876 7888888 99999999997653 22333 8
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEeeCcceecCcc----ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCC
Q psy17528 195 NINVKGTQTILALAKRMKGLKSFVHVSTAYCNCDRK----FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKP 270 (366)
Q Consensus 195 ~~nv~~~~~ll~~a~~~~~~~~~v~iSS~~~~~~~~----~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (366)
++|+.++.++++++.+. ++++||++||.++|+... +++|+. .| .
T Consensus 110 ~~N~~~~~~l~~a~~~~-~~~~iV~~SS~~~~~~~~~~~~~~~E~~--~~-----------------------------~ 157 (330)
T 2pzm_A 110 ATNVQGSINVAKAASKA-GVKRLLNFQTALCYGRPATVPIPIDSPT--AP-----------------------------F 157 (330)
T ss_dssp HHHTHHHHHHHHHHHHH-TCSEEEEEEEGGGGCSCSSSSBCTTCCC--CC-----------------------------C
T ss_pred HHHHHHHHHHHHHHHHc-CCCEEEEecCHHHhCCCccCCCCcCCCC--CC-----------------------------C
Confidence 99999999999999886 788999999998886432 333332 11 2
Q ss_pred chHHHHHHHHHHHHHHhcCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHH
Q psy17528 271 NSYTLTKATAEDLVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRV 350 (366)
Q Consensus 271 ~~Y~~sK~~~E~~l~~~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDv 350 (366)
+.|+.+|+.+|.+++.+ +++++++||+++|||+.. ..+ ...++.....+. .+++++. .++++|++|+
T Consensus 158 ~~Y~~sK~~~e~~~~~~--~~~~~~iR~~~v~gp~~~--~~~------~~~~~~~~~~~~--~~~~~~~-~~~~i~~~Dv 224 (330)
T 2pzm_A 158 TSYGISKTAGEAFLMMS--DVPVVSLRLANVTGPRLA--IGP------IPTFYKRLKAGQ--KCFCSDT-VRDFLDMSDF 224 (330)
T ss_dssp SHHHHHHHHHHHHHHTC--SSCEEEEEECEEECTTCC--SSH------HHHHHHHHHTTC--CCCEESC-EECEEEHHHH
T ss_pred ChHHHHHHHHHHHHHHc--CCCEEEEeeeeeECcCCC--CCH------HHHHHHHHHcCC--EEeCCCC-EecceeHHHH
Confidence 78999999999999887 799999999999999741 111 133444555555 4455566 8999999999
Q ss_pred HH-HHHHHHHhh
Q psy17528 351 IN-AMAALAWYF 361 (366)
Q Consensus 351 a~-ai~~~~~~~ 361 (366)
|+ +++.+++.+
T Consensus 225 a~~a~~~~~~~~ 236 (330)
T 2pzm_A 225 LAIADLSLQEGR 236 (330)
T ss_dssp HHHHHHHTSTTC
T ss_pred HHHHHHHHhhcC
Confidence 99 999988764
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-26 Score=221.85 Aligned_cols=222 Identities=17% Similarity=0.153 Sum_probs=166.1
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|+|||||||||||++|+++|++.|. ++|++++|+..... ...
T Consensus 44 ~~~~~vlVtGatG~iG~~l~~~L~~~g~--~~V~~~~r~~~~~~----------------~~~----------------- 88 (357)
T 2x6t_A 44 IEGRMIIVTGGAGFIGSNIVKALNDKGI--TDILVVDNLKDGTK----------------FVN----------------- 88 (357)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTTC--CCEEEEECCSSGGG----------------GGG-----------------
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC--cEEEEEecCCCcch----------------hhc-----------------
Confidence 4578999999999999999999999972 57888888754210 000
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-----CcCEEEEcCcccCh-hhhHHHHHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-----QTTIIFHIAATVRF-DEHIRTAYNINVK 199 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-----~~d~Vih~a~~~~~-~~~~~~~~~~nv~ 199 (366)
. ..+. +.+|+.+.+ .+..+++ ++|+|||+|+.... ...+...+++|+.
T Consensus 89 ---------------~----~~~~-~~~d~~~~~------~~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~n~~ 142 (357)
T 2x6t_A 89 ---------------L----VDLN-IADYMDKED------FLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQ 142 (357)
T ss_dssp ---------------T----TTSC-CSEEEEHHH------HHHHHHTTCCCSSCCEEEECCSCCCTTCCCHHHHHHHTHH
T ss_pred ---------------c----cCce-EeeecCcHH------HHHHHHhhcccCCCCEEEECCcccCCccCCHHHHHHHHHH
Confidence 0 1122 678888766 6777776 59999999997653 3456788999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEeeCcceecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHH
Q psy17528 200 GTQTILALAKRMKGLKSFVHVSTAYCNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTK 277 (366)
Q Consensus 200 ~~~~ll~~a~~~~~~~~~v~iSS~~~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK 277 (366)
++.++++++.+. ++ +||++||..+|+... +++|+..+.|. +.|+.+|
T Consensus 143 ~~~~ll~a~~~~-~~-r~V~~SS~~v~g~~~~~~~~E~~~~~p~-----------------------------~~Y~~sK 191 (357)
T 2x6t_A 143 YSKELLHYCLER-EI-PFLYASSAATYGGRTSDFIESREYEKPL-----------------------------NVFGYSK 191 (357)
T ss_dssp HHHHHHHHHHHH-TC-CEEEEEEGGGGCSCSSCCCSSGGGCCCS-----------------------------SHHHHHH
T ss_pred HHHHHHHHHHHc-CC-eEEEEcchHHhCCCCCCCcCCcCCCCCC-----------------------------ChhHHHH
Confidence 999999999986 66 999999998886533 45555433332 7899999
Q ss_pred HHHHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCc-ccCcccHHHHHHHH
Q psy17528 278 ATAEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNI-SMDVVPGDRVINAM 354 (366)
Q Consensus 278 ~~~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~-~~~~v~vdDva~ai 354 (366)
..+|.+++.+. .+++++++||++||||+..+..... ..+..++.....+....++++++. .++|+|++|+|+++
T Consensus 192 ~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~ai 268 (357)
T 2x6t_A 192 FLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMA---SVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVN 268 (357)
T ss_dssp HHHHHHHHHHGGGCSSCEEEEEECEEESSSCTTCGGGS---CHHHHHHHHHHTTCCCEEETTGGGCEECEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCeEECCCCCCCcccc---hHHHHHHHHHHcCCCcEEeCCCCcceEccEEHHHHHHHH
Confidence 99999999887 6899999999999999765321111 122445566677777667777778 89999999999999
Q ss_pred HHHHHhhh
Q psy17528 355 AALAWYFL 362 (366)
Q Consensus 355 ~~~~~~~~ 362 (366)
+.+++.+.
T Consensus 269 ~~~~~~~~ 276 (357)
T 2x6t_A 269 LWFLENGV 276 (357)
T ss_dssp HHHHHHCC
T ss_pred HHHHhcCC
Confidence 99988653
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-25 Score=213.51 Aligned_cols=226 Identities=19% Similarity=0.186 Sum_probs=172.0
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCC----ccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQ----IRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGI 121 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~----~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (366)
+++|+||||||+||||++++++|++.|.. +++|++++|+.....
T Consensus 12 ~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~-------------------------------- 59 (342)
T 2hrz_A 12 FQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAP-------------------------------- 59 (342)
T ss_dssp CSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCC--------------------------------
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCccc--------------------------------
Confidence 56789999999999999999999999720 158999999754211
Q ss_pred ccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-CcCEEEEcCcccCh--hhhHHHHHHHHH
Q psy17528 122 THRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-QTTIIFHIAATVRF--DEHIRTAYNINV 198 (366)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-~~d~Vih~a~~~~~--~~~~~~~~~~nv 198 (366)
.....++.++.+|+.+.+ .+..+++ ++|+|||+||.... ..++...+++|+
T Consensus 60 --------------------~~~~~~~~~~~~Dl~d~~------~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv 113 (342)
T 2hrz_A 60 --------------------AGFSGAVDARAADLSAPG------EAEKLVEARPDVIFHLAAIVSGEAELDFDKGYRINL 113 (342)
T ss_dssp --------------------TTCCSEEEEEECCTTSTT------HHHHHHHTCCSEEEECCCCCHHHHHHCHHHHHHHHT
T ss_pred --------------------cccCCceeEEEcCCCCHH------HHHHHHhcCCCEEEECCccCcccccccHHHHHHHHH
Confidence 001357889999999987 7888884 89999999997542 345677899999
Q ss_pred HHHHHHHHHHHhcC----CCcEEEEeeCcceecCc--cccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCch
Q psy17528 199 KGTQTILALAKRMK----GLKSFVHVSTAYCNCDR--KFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNS 272 (366)
Q Consensus 199 ~~~~~ll~~a~~~~----~~~~~v~iSS~~~~~~~--~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (366)
.++.++++++.+.+ ++++||++||..+|+.. .+++|+..+.|. +.
T Consensus 114 ~g~~~l~~~~~~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~~~~~~~-----------------------------~~ 164 (342)
T 2hrz_A 114 DGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFGAPLPYPIPDEFHTTPL-----------------------------TS 164 (342)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGCCSSCCSSBCTTCCCCCS-----------------------------SH
T ss_pred HHHHHHHHHHHhcccccCCCcEEEEeCchHhhCCCCCCCcCCCCCCCCc-----------------------------ch
Confidence 99999999998763 27899999999888753 345555443332 78
Q ss_pred HHHHHHHHHHHHHHhc--CCCCEEEEecCcccc-CCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHH
Q psy17528 273 YTLTKATAEDLVRQVG--HELPICVLRPSIVFP-TLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDR 349 (366)
Q Consensus 273 Y~~sK~~~E~~l~~~~--~gl~~~ilRp~~v~G-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdD 349 (366)
|+.+|+.+|.+++++. .+++.+++|++.||| |+... .. . ...+..++.....+....++.+++...+++|++|
T Consensus 165 Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~pg~~~-~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D 240 (342)
T 2hrz_A 165 YGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGKPN-AA-A--SGFFSNILREPLVGQEAVLPVPESIRHWHASPRS 240 (342)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCCSSCC-CS-G--GGHHHHHHHHHHTTCCEEECSCTTCEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecCCCCc-ch-h--HHHHHHHHHHHhcCCCeeccCCCccceeeEehHH
Confidence 9999999999998876 578999999999998 54321 11 0 1123445666667776666656667788999999
Q ss_pred HHHHHHHHHHhhh
Q psy17528 350 VINAMAALAWYFL 362 (366)
Q Consensus 350 va~ai~~~~~~~~ 362 (366)
+|++++.+++.+.
T Consensus 241 va~~~~~~~~~~~ 253 (342)
T 2hrz_A 241 AVGFLIHGAMIDV 253 (342)
T ss_dssp HHHHHHHHHHSCH
T ss_pred HHHHHHHHHhccc
Confidence 9999999987653
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.3e-25 Score=211.15 Aligned_cols=229 Identities=17% Similarity=0.171 Sum_probs=161.4
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCc-CHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGST-SITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
|+|||||||||||++++++|++.| ++|++++|..... ...+.+.+.
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G---~~V~~~~~~~~~~~~~~~~~~~~------------------------------ 47 (338)
T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQNG---HDVIILDNLCNSKRSVLPVIERL------------------------------ 47 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCSSCCTTHHHHHHHH------------------------------
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC---CEEEEEecCCCcchhHHHHHHhh------------------------------
Confidence 479999999999999999999998 7898988754321 111111110
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccChh---hhHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRFD---EHIRTAYNINVKGTQ 202 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~~---~~~~~~~~~nv~~~~ 202 (366)
...++.++.+|+.+.+ .+.++++ ++|+|||+||..... ......+++|+.++.
T Consensus 48 ----------------~~~~~~~~~~Dl~~~~------~~~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~~~~n~~~~~ 105 (338)
T 1udb_A 48 ----------------GGKHPTFVEGDIRNEA------LMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTL 105 (338)
T ss_dssp ----------------HTSCCEEEECCTTCHH------HHHHHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHHHHHH
T ss_pred ----------------cCCcceEEEccCCCHH------HHHHHhhccCCCEEEECCccCccccchhcHHHHHHHHHHHHH
Confidence 0135778999999876 6777776 599999999975432 345678899999999
Q ss_pred HHHHHHHhcCCCcEEEEeeCcceecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHH
Q psy17528 203 TILALAKRMKGLKSFVHVSTAYCNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATA 280 (366)
Q Consensus 203 ~ll~~a~~~~~~~~~v~iSS~~~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~ 280 (366)
++++++++. ++++||++||..+|+... +++|+....| ..+.|+.+|+.+
T Consensus 106 ~l~~~~~~~-~~~~iv~~SS~~~~g~~~~~~~~e~~~~~~----------------------------~~~~Y~~sK~~~ 156 (338)
T 1udb_A 106 RLISAMRAA-NVKNFIFSSSATVYGDNPKIPYVESFPTGT----------------------------PQSPYGKSKLMV 156 (338)
T ss_dssp HHHHHHHHH-TCCEEEEEEEGGGGCSCCSSSBCTTSCCCC----------------------------CSSHHHHHHHHH
T ss_pred HHHHHHHhc-CCCeEEEEccHHHhCCCCCCCcCcccCCCC----------------------------CCChHHHHHHHH
Confidence 999999876 788999999998886432 3444432211 127899999999
Q ss_pred HHHHHHhc--C-CCCEEEEecCccccCCCCCCCcccc-c-cchHHHHHHHHh--cCcceeecC------CCCcccCcccH
Q psy17528 281 EDLVRQVG--H-ELPICVLRPSIVFPTLQEPMPLWIK-G-FNGVMALALGAG--TGLIRVVQT------DPNISMDVVPG 347 (366)
Q Consensus 281 E~~l~~~~--~-gl~~~ilRp~~v~G~~~~~~~~~~~-~-~~~~~~~~~~~~--~g~~~~l~~------~~~~~~~~v~v 347 (366)
|.+++.+. . +++++++||+++||+......+... . ...+...+.... .+....+++ +++..++|||+
T Consensus 157 e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v 236 (338)
T 1udb_A 157 EQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHV 236 (338)
T ss_dssp HHHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCEECEEEH
T ss_pred HHHHHHHHHhcCCCceEEEeeceecCCCcccccccccccchhhHHHHHHHHHHhcCCCcEEecCcccCCCCceeeeeEEH
Confidence 99998876 3 7999999999999985422111110 0 111223333332 233333333 46788999999
Q ss_pred HHHHHHHHHHHHhh
Q psy17528 348 DRVINAMAALAWYF 361 (366)
Q Consensus 348 dDva~ai~~~~~~~ 361 (366)
+|+|++++.+++.+
T Consensus 237 ~Dva~a~~~~l~~~ 250 (338)
T 1udb_A 237 MDLADGHVVAMEKL 250 (338)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999988764
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-25 Score=215.91 Aligned_cols=224 Identities=19% Similarity=0.159 Sum_probs=166.4
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
..+++++|||||||||||++|+++|++.| ++|++++|....... . +..
T Consensus 23 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~--~------------~~~--------------- 70 (343)
T 2b69_A 23 MEKDRKRILITGGAGFVGSHLTDKLMMDG---HEVTVVDNFFTGRKR--N------------VEH--------------- 70 (343)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCSSCCGG--G------------TGG---------------
T ss_pred cccCCCEEEEEcCccHHHHHHHHHHHHCC---CEEEEEeCCCccchh--h------------hhh---------------
Confidence 33567899999999999999999999998 899999997532110 0 000
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh---hhHHHHHHHHHHH
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD---EHIRTAYNINVKG 200 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~---~~~~~~~~~nv~~ 200 (366)
. ....++.++.+|+.+.. +.++|+|||+|+..... .++...+++|+.+
T Consensus 71 -----------------~-~~~~~~~~~~~D~~~~~-----------~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~ 121 (343)
T 2b69_A 71 -----------------W-IGHENFELINHDVVEPL-----------YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIG 121 (343)
T ss_dssp -----------------G-TTCTTEEEEECCTTSCC-----------CCCCSEEEECCSCCSHHHHTTCHHHHHHHHHHH
T ss_pred -----------------h-ccCCceEEEeCccCChh-----------hcCCCEEEECccccCchhhhhCHHHHHHHHHHH
Confidence 0 01247889999998864 35799999999976532 3566788999999
Q ss_pred HHHHHHHHHhcCCCcEEEEeeCcceecCc--cccccccCCC--CCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHH
Q psy17528 201 TQTILALAKRMKGLKSFVHVSTAYCNCDR--KFIAEKFYPP--VFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLT 276 (366)
Q Consensus 201 ~~~ll~~a~~~~~~~~~v~iSS~~~~~~~--~~~~e~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~s 276 (366)
+.++++++.+. +. +||++||.++|+.. .+++|..+.. |. ...+.|+.+
T Consensus 122 ~~~l~~a~~~~-~~-~~v~~SS~~v~g~~~~~~~~E~~~~~~~~~--------------------------~~~~~Y~~s 173 (343)
T 2b69_A 122 TLNMLGLAKRV-GA-RLLLASTSEVYGDPEVHPQSEDYWGHVNPI--------------------------GPRACYDEG 173 (343)
T ss_dssp HHHHHHHHHHH-TC-EEEEEEEGGGGBSCSSSSBCTTCCCBCCSS--------------------------STTHHHHHH
T ss_pred HHHHHHHHHHh-CC-cEEEECcHHHhCCCCCCCCcccccccCCCC--------------------------CCCCchHHH
Confidence 99999999887 44 99999999888753 2455543211 11 112689999
Q ss_pred HHHHHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHH
Q psy17528 277 KATAEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAM 354 (366)
Q Consensus 277 K~~~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai 354 (366)
|+.+|.+++.+. .+++++++||++||||+..+... ..+..++.....+....++++++..++|+|++|+|+++
T Consensus 174 K~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~ 248 (343)
T 2b69_A 174 KRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDG-----RVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGL 248 (343)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCC-----CHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcEEEEEEcceeCcCCCCCcc-----cHHHHHHHHHHcCCCceEcCCCCeEEeeEeHHHHHHHH
Confidence 999999998765 68999999999999997643211 11244566667777777778888899999999999999
Q ss_pred HHHHHhh
Q psy17528 355 AALAWYF 361 (366)
Q Consensus 355 ~~~~~~~ 361 (366)
+.+++.+
T Consensus 249 ~~~~~~~ 255 (343)
T 2b69_A 249 VALMNSN 255 (343)
T ss_dssp HHHHTSS
T ss_pred HHHHhcC
Confidence 9988754
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-25 Score=217.90 Aligned_cols=230 Identities=17% Similarity=0.076 Sum_probs=169.1
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
++||||||+||||++++++|++.| ++|++++|+...... +++. .+...
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~-~~~~---------~l~~~------------------- 72 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEKG---YEVHGIVRRSSSFNT-GRIE---------HLYKN------------------- 72 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCCSSCCC-TTTG---------GGC---------------------
T ss_pred cEEEEECCCchHHHHHHHHHHHCC---CEEEEEECCccccch-hhHH---------HHhhh-------------------
Confidence 789999999999999999999998 899999997643110 0000 00000
Q ss_pred cchhhhhhccccCC-CCCCcEEEEeccCCcCCCCCCHHHHHHHHhC--cCEEEEcCcccChh---hhHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECP-NYADKVDIVCGQLEADTFGLSARDEELLISQ--TTIIFHIAATVRFD---EHIRTAYNINVKGTQ 202 (366)
Q Consensus 129 ~~~~~~~~~~~~~~-~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~--~d~Vih~a~~~~~~---~~~~~~~~~nv~~~~ 202 (366)
.. ....++.++.+|+.+.+ .+.+++++ +|+|||+||..... .++...+++|+.++.
T Consensus 73 ------------~~~~~~~~~~~~~~Dl~d~~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~ 134 (375)
T 1t2a_A 73 ------------PQAHIEGNMKLHYGDLTDST------CLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTL 134 (375)
T ss_dssp -------------------CEEEEECCTTCHH------HHHHHHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHH
T ss_pred ------------hccccCCCceEEEccCCCHH------HHHHHHHhcCCCEEEECCCcccccccccCHHHHHHHHHHHHH
Confidence 00 01246889999999876 78888774 69999999976543 456778899999999
Q ss_pred HHHHHHHhcCCC---cEEEEeeCcceecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHH
Q psy17528 203 TILALAKRMKGL---KSFVHVSTAYCNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTK 277 (366)
Q Consensus 203 ~ll~~a~~~~~~---~~~v~iSS~~~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK 277 (366)
++++++.+. ++ ++||++||.++|+... +++|+..+.|. +.|+.+|
T Consensus 135 ~l~~a~~~~-~~~~~~~iv~~SS~~~~~~~~~~~~~E~~~~~~~-----------------------------~~Y~~sK 184 (375)
T 1t2a_A 135 RLLDAVKTC-GLINSVKFYQASTSELYGKVQEIPQKETTPFYPR-----------------------------SPYGAAK 184 (375)
T ss_dssp HHHHHHHHT-TCTTTCEEEEEEEGGGTCSCSSSSBCTTSCCCCC-----------------------------SHHHHHH
T ss_pred HHHHHHHHh-CCCccceEEEecchhhhCCCCCCCCCccCCCCCC-----------------------------ChhHHHH
Confidence 999999886 55 7999999998887532 45555433332 7899999
Q ss_pred HHHHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcc-eeecCCCCcccCcccHHHHHHHH
Q psy17528 278 ATAEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLI-RVVQTDPNISMDVVPGDRVINAM 354 (366)
Q Consensus 278 ~~~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~l~~~~~~~~~~v~vdDva~ai 354 (366)
+.+|.+++.+. .+++++++||+.+|||+..+ .+. ...+..++..+..|.. ...+++++..++|+|++|+|+++
T Consensus 185 ~~~e~~~~~~~~~~~~~~~i~r~~~~~gp~~~~--~~~--~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~v~Dva~a~ 260 (375)
T 1t2a_A 185 LYAYWIVVNFREAYNLFAVNGILFNHESPRRGA--NFV--TRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAM 260 (375)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEECCEECTTSCT--TSH--HHHHHHHHHHHHHTSCSCEEESCTTCEECCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEecccccCCCCCC--Ccc--hHHHHHHHHHHHcCCCceeEeCCCCceeeeEEHHHHHHHH
Confidence 99999998876 58999999999999997542 111 0112344555555653 34567788999999999999999
Q ss_pred HHHHHhhh
Q psy17528 355 AALAWYFL 362 (366)
Q Consensus 355 ~~~~~~~~ 362 (366)
+.+++.+.
T Consensus 261 ~~~~~~~~ 268 (375)
T 1t2a_A 261 WLMLQNDE 268 (375)
T ss_dssp HHHHHSSS
T ss_pred HHHHhcCC
Confidence 99987653
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=5.2e-26 Score=215.32 Aligned_cols=218 Identities=17% Similarity=0.161 Sum_probs=156.8
Q ss_pred eEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccccc
Q psy17528 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNYF 129 (366)
Q Consensus 50 ~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (366)
+|||||||||||++++++|++.|. +.|++++|+...... +.+
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~--~~V~~~~r~~~~~~~-~~~----------------------------------- 42 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGI--TDILVVDNLKDGTKF-VNL----------------------------------- 42 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTC--CCEEEEECCSSGGGG-HHH-----------------------------------
T ss_pred CEEEEcCccHHHHHHHHHHHHCCC--cEEEEEccCCCCchh-hhc-----------------------------------
Confidence 589999999999999999999972 578888887542110 000
Q ss_pred chhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhC-----cCEEEEcCcccCh-hhhHHHHHHHHHHHHHH
Q psy17528 130 NDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQ-----TTIIFHIAATVRF-DEHIRTAYNINVKGTQT 203 (366)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~-----~d~Vih~a~~~~~-~~~~~~~~~~nv~~~~~ 203 (366)
..+. +.+|+.+.+ .+..++++ +|+|||+|+.... ..+....+++|+.++.+
T Consensus 43 ----------------~~~~-~~~d~~~~~------~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~ 99 (310)
T 1eq2_A 43 ----------------VDLN-IADYMDKED------FLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKE 99 (310)
T ss_dssp ----------------HTSC-CSEEEEHHH------HHHHHHTTCCCSSCCEEEECCSCCCTTCCCHHHHHHHTHHHHHH
T ss_pred ----------------Ccce-eccccccHH------HHHHHHhccccCCCcEEEECcccccCcccCHHHHHHHHHHHHHH
Confidence 0111 568888766 67777764 9999999997653 34567889999999999
Q ss_pred HHHHHHhcCCCcEEEEeeCcceecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHH
Q psy17528 204 ILALAKRMKGLKSFVHVSTAYCNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAE 281 (366)
Q Consensus 204 ll~~a~~~~~~~~~v~iSS~~~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E 281 (366)
+++++.+. ++ +||++||.++|+... +++|+..+.|. +.|+.+|..+|
T Consensus 100 l~~a~~~~-~~-~~v~~SS~~v~g~~~~~~~~E~~~~~p~-----------------------------~~Y~~sK~~~e 148 (310)
T 1eq2_A 100 LLHYCLER-EI-PFLYASSAATYGGRTSDFIESREYEKPL-----------------------------NVYGYSKFLFD 148 (310)
T ss_dssp HHHHHHHH-TC-CEEEEEEGGGGTTCCSCBCSSGGGCCCS-----------------------------SHHHHHHHHHH
T ss_pred HHHHHHHc-CC-eEEEEeeHHHhCCCCCCCCCCCCCCCCC-----------------------------ChhHHHHHHHH
Confidence 99999987 67 999999998886533 45555433332 78999999999
Q ss_pred HHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCc-ccCcccHHHHHHHHHHHH
Q psy17528 282 DLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNI-SMDVVPGDRVINAMAALA 358 (366)
Q Consensus 282 ~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~-~~~~v~vdDva~ai~~~~ 358 (366)
.+++.+. .+++++++||++|||++..+.... ...+..++.....+....++++++. .++|+|++|+|++++.++
T Consensus 149 ~~~~~~~~~~g~~~~~lrp~~v~G~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~Dva~~~~~~~ 225 (310)
T 1eq2_A 149 EYVRQILPEANSQIVGFRYFNVYGPREGHKGSM---ASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFL 225 (310)
T ss_dssp HHHHHHGGGCSSCEEEEEECEEESSSCGGGGGG---SCHHHHHHHHHHC-------------CBCEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcEECcCCCCCCcc---chHHHHHHHHHHcCCCcEEecCCCcceEccEEHHHHHHHHHHHH
Confidence 9999876 689999999999999976421111 0123455666677776666777788 899999999999999998
Q ss_pred Hhhh
Q psy17528 359 WYFL 362 (366)
Q Consensus 359 ~~~~ 362 (366)
+.+.
T Consensus 226 ~~~~ 229 (310)
T 1eq2_A 226 ENGV 229 (310)
T ss_dssp HHCC
T ss_pred hcCC
Confidence 8653
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=211.48 Aligned_cols=193 Identities=21% Similarity=0.190 Sum_probs=157.7
Q ss_pred eEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccccc
Q psy17528 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNYF 129 (366)
Q Consensus 50 ~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (366)
+|||||||||||++++++|++.| ++|++++|.
T Consensus 7 ~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~r~--------------------------------------------- 38 (287)
T 3sc6_A 7 RVIITGANGQLGKQLQEELNPEE---YDIYPFDKK--------------------------------------------- 38 (287)
T ss_dssp EEEEESTTSHHHHHHHHHSCTTT---EEEEEECTT---------------------------------------------
T ss_pred EEEEECCCCHHHHHHHHHHHhCC---CEEEEeccc---------------------------------------------
Confidence 89999999999999999999998 899999883
Q ss_pred chhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccChh---hhHHHHHHHHHHHHHHH
Q psy17528 130 NDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRFD---EHIRTAYNINVKGTQTI 204 (366)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~~---~~~~~~~~~nv~~~~~l 204 (366)
.+|+.+.+ .+.++++ ++|+|||+|+..... .++...+++|+.++.++
T Consensus 39 ----------------------~~D~~d~~------~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l 90 (287)
T 3sc6_A 39 ----------------------LLDITNIS------QVQQVVQEIRPHIIIHCAAYTKVDQAEKERDLAYVINAIGARNV 90 (287)
T ss_dssp ----------------------TSCTTCHH------HHHHHHHHHCCSEEEECCCCCCHHHHTTCHHHHHHHHTHHHHHH
T ss_pred ----------------------ccCCCCHH------HHHHHHHhcCCCEEEECCcccChHHHhcCHHHHHHHHHHHHHHH
Confidence 25677765 7777777 799999999987643 36778999999999999
Q ss_pred HHHHHhcCCCcEEEEeeCcceecCc--cccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHH
Q psy17528 205 LALAKRMKGLKSFVHVSTAYCNCDR--KFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAED 282 (366)
Q Consensus 205 l~~a~~~~~~~~~v~iSS~~~~~~~--~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~ 282 (366)
++++.+. ++ +|||+||.++|+.. .+++|+..+.|. +.|+.+|..+|+
T Consensus 91 ~~~~~~~-~~-~~v~~SS~~vy~~~~~~~~~E~~~~~p~-----------------------------~~Y~~sK~~~E~ 139 (287)
T 3sc6_A 91 AVASQLV-GA-KLVYISTDYVFQGDRPEGYDEFHNPAPI-----------------------------NIYGASKYAGEQ 139 (287)
T ss_dssp HHHHHHH-TC-EEEEEEEGGGSCCCCSSCBCTTSCCCCC-----------------------------SHHHHHHHHHHH
T ss_pred HHHHHHc-CC-eEEEEchhhhcCCCCCCCCCCCCCCCCC-----------------------------CHHHHHHHHHHH
Confidence 9999987 55 79999999988653 356666555443 789999999999
Q ss_pred HHHHhcCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 283 LVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 283 ~l~~~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
+++.+. .+++++||+.||||.... .+..++.....+....+.+ +..++|+|++|+|++++.++.++.
T Consensus 140 ~~~~~~--~~~~ilR~~~v~G~~~~~---------~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~Dva~~~~~~~~~~~ 206 (287)
T 3sc6_A 140 FVKELH--NKYFIVRTSWLYGKYGNN---------FVKTMIRLGKEREEISVVA--DQIGSPTYVADLNVMINKLIHTSL 206 (287)
T ss_dssp HHHHHC--SSEEEEEECSEECSSSCC---------HHHHHHHHHTTCSEEEEEC--SCEECCEEHHHHHHHHHHHHTSCC
T ss_pred HHHHhC--CCcEEEeeeeecCCCCCc---------HHHHHHHHHHcCCCeEeec--CcccCceEHHHHHHHHHHHHhCCC
Confidence 999985 588999999999987531 1244556666677666664 478999999999999999998764
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-25 Score=215.72 Aligned_cols=230 Identities=16% Similarity=0.098 Sum_probs=166.3
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
||+|||||||||||++++++|++.| ++|++++|+.+... .+++..+. ..
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~-~~~~~~~~---------~~------------------ 49 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKG---YEVHGIKRRASSFN-TERVDHIY---------QD------------------ 49 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEECC--------------------------------------------
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC---CEEEEEECCCcccc-hHHHHHHh---------hc------------------
Confidence 5789999999999999999999998 89999999754210 01111100 00
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhC--cCEEEEcCcccCh---hhhHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQ--TTIIFHIAATVRF---DEHIRTAYNINVKGTQ 202 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~--~d~Vih~a~~~~~---~~~~~~~~~~nv~~~~ 202 (366)
......++.++.+|+.+.+ .+.+++++ +|+|||+||.... ..++...+++|+.++.
T Consensus 50 -------------~~~~~~~~~~~~~Dl~d~~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~ 110 (372)
T 1db3_A 50 -------------PHTCNPKFHLHYGDLSDTS------NLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTL 110 (372)
T ss_dssp ------------------CCEEECCCCSSCHH------HHHHHHHHHCCSEEEECCCCCTTTTTTSCHHHHHHHHTHHHH
T ss_pred -------------cccCCCceEEEECCCCCHH------HHHHHHHhcCCCEEEECCcccCccccccCHHHHHHHHHHHHH
Confidence 0001257889999999876 77887774 7999999997543 2356678899999999
Q ss_pred HHHHHHHhcCCC---cEEEEeeCcceecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHH
Q psy17528 203 TILALAKRMKGL---KSFVHVSTAYCNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTK 277 (366)
Q Consensus 203 ~ll~~a~~~~~~---~~~v~iSS~~~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK 277 (366)
++++++.+. ++ ++||++||.++|+... +++|+....|. +.|+.+|
T Consensus 111 ~l~~~~~~~-~~~~~~~iv~~SS~~v~g~~~~~~~~E~~~~~~~-----------------------------~~Y~~sK 160 (372)
T 1db3_A 111 RLLEAIRFL-GLEKKTRFYQASTSELYGLVQEIPQKETTPFYPR-----------------------------SPYAVAK 160 (372)
T ss_dssp HHHHHHHHT-TCTTTCEEEEEEEGGGGTTCCSSSBCTTSCCCCC-----------------------------SHHHHHH
T ss_pred HHHHHHHHh-CCCCCcEEEEeCChhhhCCCCCCCCCccCCCCCC-----------------------------ChHHHHH
Confidence 999999886 55 7999999998887532 45555433332 7899999
Q ss_pred HHHHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcc-eeecCCCCcccCcccHHHHHHHH
Q psy17528 278 ATAEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLI-RVVQTDPNISMDVVPGDRVINAM 354 (366)
Q Consensus 278 ~~~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~l~~~~~~~~~~v~vdDva~ai 354 (366)
..+|.+++.+. .+++++++|++.+|||+... .+. ...+..++.....|.. ...+++++..++|+|++|+|+++
T Consensus 161 ~~~e~~~~~~~~~~~~~~~~~r~~~~~gp~~~~--~~~--~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~v~Dva~a~ 236 (372)
T 1db3_A 161 LYAYWITVNYRESYGMYACNGILFNHESPRRGE--TFV--TRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQ 236 (372)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEECCEECTTSCT--TSH--HHHHHHHHHHHHTTSCCCEEESCTTCEECCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCeEEEEECCccCCCCCC--cch--hhHHHHHHHHHHcCCCCceeecCCCceeeeeEHHHHHHHH
Confidence 99999998876 58999999999999997642 111 0112344555566653 34567888999999999999999
Q ss_pred HHHHHhh
Q psy17528 355 AALAWYF 361 (366)
Q Consensus 355 ~~~~~~~ 361 (366)
+.+++.+
T Consensus 237 ~~~~~~~ 243 (372)
T 1db3_A 237 WMMLQQE 243 (372)
T ss_dssp HHTTSSS
T ss_pred HHHHhcC
Confidence 9988764
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-25 Score=214.32 Aligned_cols=233 Identities=21% Similarity=0.233 Sum_probs=152.8
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEc-CCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIR-TRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
+++|||||||||||++++++|++.| ++|++++| +.......+.+.+
T Consensus 1 ~k~vlVTGatG~iG~~l~~~L~~~G---~~V~~~~r~~~~~~~~~~~~~~------------------------------ 47 (322)
T 2p4h_X 1 KGRVCVTGGTGFLGSWIIKSLLENG---YSVNTTIRADPERKRDVSFLTN------------------------------ 47 (322)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT---CEEEEECCCC----CCCHHHHT------------------------------
T ss_pred CCEEEEECChhHHHHHHHHHHHHCC---CEEEEEEeCCccchhHHHHHHh------------------------------
Confidence 4789999999999999999999998 88999888 5321100000000
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhh-h-HHHHHHHHHHHHHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDE-H-IRTAYNINVKGTQTI 204 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~-~-~~~~~~~nv~~~~~l 204 (366)
.+....++.++.+|+.+.+ .+..+++++|+|||+|+...... + ....+++|+.++.++
T Consensus 48 --------------~~~~~~~~~~~~~Dl~d~~------~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~l 107 (322)
T 2p4h_X 48 --------------LPGASEKLHFFNADLSNPD------SFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGI 107 (322)
T ss_dssp --------------STTHHHHEEECCCCTTCGG------GGHHHHTTCSEEEECCCCC--------CHHHHHHHHHHHHH
T ss_pred --------------hhccCCceEEEecCCCCHH------HHHHHHcCCCEEEEcCCcccCCCCChHHHHHHHHHHHHHHH
Confidence 0000135788899999987 78888999999999998653221 2 234889999999999
Q ss_pred HHHHHhcCCCcEEEEeeCcceec-Cc---cccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHH
Q psy17528 205 LALAKRMKGLKSFVHVSTAYCNC-DR---KFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATA 280 (366)
Q Consensus 205 l~~a~~~~~~~~~v~iSS~~~~~-~~---~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~ 280 (366)
++++.+..++++|||+||..++. .. .+++|+....+ ....+..| ..+.|+.+|..+
T Consensus 108 ~~aa~~~~~~~~iV~~SS~~~~~~~~~~~~~~~e~~~~~~---------------~~~~~~~p-----~~~~Y~~sK~~~ 167 (322)
T 2p4h_X 108 LKACVNSKTVKRFIYTSSGSAVSFNGKDKDVLDESDWSDV---------------DLLRSVKP-----FGWNYAVSKTLA 167 (322)
T ss_dssp HHHHTTCSSCCEEEEEEEGGGTSCSSSCCSEECTTCCCCH---------------HHHHHHCC-----TTHHHHHHHHHH
T ss_pred HHHHHhcCCccEEEEeccHHHcccCCCCCeecCCccccch---------------hhhcccCc-----ccccHHHHHHHH
Confidence 99998753578999999986442 21 12333321110 00001110 012699999999
Q ss_pred HHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHH
Q psy17528 281 EDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALA 358 (366)
Q Consensus 281 E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~ 358 (366)
|.++.++. ++++++++||++||||...+. .......+.....|....+. . ..++|+|++|+|++++.++
T Consensus 168 e~~~~~~~~~~gi~~~~lrp~~v~g~~~~~~------~~~~~~~~~~~~~g~~~~~~-~--~~~~~i~v~Dva~a~~~~~ 238 (322)
T 2p4h_X 168 EKAVLEFGEQNGIDVVTLILPFIVGRFVCPK------LPDSIEKALVLVLGKKEQIG-V--TRFHMVHVDDVARAHIYLL 238 (322)
T ss_dssp HHHHHHHHHHTTCCEEEEEECEEESCCCSSS------CCHHHHHHTHHHHSCGGGCC-E--EEEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcEEEEcCCceECCCCCCC------CCchHHHHHHHHhCCCccCc-C--CCcCEEEHHHHHHHHHHHh
Confidence 99998865 689999999999999975421 11111112222334332222 1 3348999999999999998
Q ss_pred Hhhh
Q psy17528 359 WYFL 362 (366)
Q Consensus 359 ~~~~ 362 (366)
+.+.
T Consensus 239 ~~~~ 242 (322)
T 2p4h_X 239 ENSV 242 (322)
T ss_dssp HSCC
T ss_pred hCcC
Confidence 7643
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-25 Score=215.51 Aligned_cols=235 Identities=19% Similarity=0.208 Sum_probs=155.6
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
++++||||||+||||++++++|++.| ++|++++|+.+.. +++.....
T Consensus 4 ~~~~vlVTGatGfIG~~l~~~L~~~G---~~V~~~~r~~~~~---~~~~~~~~--------------------------- 50 (337)
T 2c29_D 4 QSETVCVTGASGFIGSWLVMRLLERG---YTVRATVRDPTNV---KKVKHLLD--------------------------- 50 (337)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESCTTCH---HHHHHHHT---------------------------
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCC---CEEEEEECCcchh---HHHHHHHh---------------------------
Confidence 46899999999999999999999998 8899999975421 11111000
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh-hh-HHHHHHHHHHHHHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD-EH-IRTAYNINVKGTQTI 204 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~-~~-~~~~~~~nv~~~~~l 204 (366)
......++.++.+|+.+.+ .+..+++++|+|||+|+..... .+ ....+++|+.++.++
T Consensus 51 --------------~~~~~~~~~~~~~Dl~d~~------~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~l 110 (337)
T 2c29_D 51 --------------LPKAETHLTLWKADLADEG------SFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGI 110 (337)
T ss_dssp --------------STTHHHHEEEEECCTTSTT------TTHHHHTTCSEEEECCCCCCSSCSSHHHHTHHHHHHHHHHH
T ss_pred --------------cccCCCeEEEEEcCCCCHH------HHHHHHcCCCEEEEeccccCCCCCChHHHHHHHHHHHHHHH
Confidence 0000135788999999987 6788889999999999865432 22 245789999999999
Q ss_pred HHHHHhcCCCcEEEEeeCccee-cCc---cccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHH
Q psy17528 205 LALAKRMKGLKSFVHVSTAYCN-CDR---KFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATA 280 (366)
Q Consensus 205 l~~a~~~~~~~~~v~iSS~~~~-~~~---~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~ 280 (366)
++++.+.+.+++|||+||..++ +.. .+++|+.+.++ ....+. ....+.|+.+|..+
T Consensus 111 l~a~~~~~~~~riV~~SS~~~~~~~~~~~~~~~E~~~~~~---------------~~~~~~-----~~~~~~Y~~sK~~~ 170 (337)
T 2c29_D 111 MKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDM---------------EFCRAK-----KMTAWMYFVSKTLA 170 (337)
T ss_dssp HHHHHHHSCCCEEEEECCGGGTSCSSSCCSEECTTCCCCH---------------HHHHHH-----CCTTHHHHHHHHHH
T ss_pred HHHHHhCCCccEEEEeeeHhhcccCCCCCcccCcccCCch---------------hhhccc-----CCccchHHHHHHHH
Confidence 9999886348999999998643 321 13444422110 000000 01125799999999
Q ss_pred HHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHH
Q psy17528 281 EDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALA 358 (366)
Q Consensus 281 E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~ 358 (366)
|.++..+. ++++++++||++||||...+. +............|... .+... ....|+|++|+|++++.++
T Consensus 171 E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~------~~~~~~~~~~~~~g~~~-~~~~~-~~~~~i~v~Dva~a~~~~~ 242 (337)
T 2c29_D 171 EQAAWKYAKENNIDFITIIPTLVVGPFIMSS------MPPSLITALSPITGNEA-HYSII-RQGQFVHLDDLCNAHIYLF 242 (337)
T ss_dssp HHHHHHHHHHHTCCEEEEEECEEESCCSCSS------CCHHHHHHTHHHHTCGG-GHHHH-TEEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcEEEEeCCceECCCCCCC------CCchHHHHHHHHcCCCc-ccccc-CCCCEEEHHHHHHHHHHHh
Confidence 99998765 689999999999999976431 11101111111223222 12111 1234999999999999998
Q ss_pred Hhhh
Q psy17528 359 WYFL 362 (366)
Q Consensus 359 ~~~~ 362 (366)
+.+.
T Consensus 243 ~~~~ 246 (337)
T 2c29_D 243 ENPK 246 (337)
T ss_dssp HCTT
T ss_pred cCcc
Confidence 7643
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.5e-25 Score=210.78 Aligned_cols=214 Identities=18% Similarity=0.121 Sum_probs=158.5
Q ss_pred cccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccc
Q psy17528 43 QEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGIT 122 (366)
Q Consensus 43 ~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (366)
...+++|+|||||||||||++++++|++.| ++|++++|+...... .
T Consensus 16 ~~~~~~~~vlVTGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~--------------~----------------- 61 (333)
T 2q1w_A 16 PRGSHMKKVFITGICGQIGSHIAELLLERG---DKVVGIDNFATGRRE--------------H----------------- 61 (333)
T ss_dssp -----CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCSSCCGG--------------G-----------------
T ss_pred eecCCCCEEEEeCCccHHHHHHHHHHHHCC---CEEEEEECCCccchh--------------h-----------------
Confidence 345668999999999999999999999998 899999997532100 0
Q ss_pred cccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhC--cCEEEEcCcccChh--hhHHHHHHHHH
Q psy17528 123 HRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQ--TTIIFHIAATVRFD--EHIRTAYNINV 198 (366)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~--~d~Vih~a~~~~~~--~~~~~~~~~nv 198 (366)
... ..++.++.+|+.+.+ .+.+++++ +|+|||+||..... .++. +++|+
T Consensus 62 ------------------l~~-~~~~~~~~~Dl~d~~------~~~~~~~~~~~D~vih~A~~~~~~~~~~~~--~~~N~ 114 (333)
T 2q1w_A 62 ------------------LKD-HPNLTFVEGSIADHA------LVNQLIGDLQPDAVVHTAASYKDPDDWYND--TLTNC 114 (333)
T ss_dssp ------------------SCC-CTTEEEEECCTTCHH------HHHHHHHHHCCSEEEECCCCCSCTTCHHHH--HHHHT
T ss_pred ------------------Hhh-cCCceEEEEeCCCHH------HHHHHHhccCCcEEEECceecCCCccCChH--HHHHH
Confidence 000 147889999999976 78888887 99999999976532 2333 89999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeeCcceec----Ccc-ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchH
Q psy17528 199 KGTQTILALAKRMKGLKSFVHVSTAYCNC----DRK-FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSY 273 (366)
Q Consensus 199 ~~~~~ll~~a~~~~~~~~~v~iSS~~~~~----~~~-~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 273 (366)
.++.++++++.+. ++++||++||.++|+ ... +++|+. .| ..+.|
T Consensus 115 ~~~~~l~~a~~~~-~~~~iV~~SS~~~~g~~~~~~~~~~~E~~--~p----------------------------~~~~Y 163 (333)
T 2q1w_A 115 VGGSNVVQAAKKN-NVGRFVYFQTALCYGVKPIQQPVRLDHPR--NP----------------------------ANSSY 163 (333)
T ss_dssp HHHHHHHHHHHHT-TCSEEEEEEEGGGGCSCCCSSSBCTTSCC--CC----------------------------TTCHH
T ss_pred HHHHHHHHHHHHh-CCCEEEEECcHHHhCCCcccCCCCcCCCC--CC----------------------------CCCch
Confidence 9999999999986 788999999998886 221 222322 11 11689
Q ss_pred HHHHHHHHHHHHH-hcCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHH
Q psy17528 274 TLTKATAEDLVRQ-VGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVIN 352 (366)
Q Consensus 274 ~~sK~~~E~~l~~-~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ 352 (366)
+.+|+.+|.+++. +. +++++||+++|||+.. ..+ ...++.....+. .+++ ++..+++++++|+|+
T Consensus 164 ~~sK~~~E~~~~~s~~---~~~ilR~~~v~gp~~~--~~~------~~~~~~~~~~~~--~~~~-~~~~~~~i~v~Dva~ 229 (333)
T 2q1w_A 164 AISKSANEDYLEYSGL---DFVTFRLANVVGPRNV--SGP------LPIFFQRLSEGK--KCFV-TKARRDFVFVKDLAR 229 (333)
T ss_dssp HHHHHHHHHHHHHHTC---CEEEEEESEEESTTCC--SSH------HHHHHHHHHTTC--CCEE-EECEECEEEHHHHHH
T ss_pred HHHHHHHHHHHHhhhC---CeEEEeeceEECcCCc--CcH------HHHHHHHHHcCC--eeeC-CCceEeeEEHHHHHH
Confidence 9999999999998 64 8999999999999731 111 233445555555 3444 567899999999999
Q ss_pred HHHHHHHhhh
Q psy17528 353 AMAALAWYFL 362 (366)
Q Consensus 353 ai~~~~~~~~ 362 (366)
+++.+++.+.
T Consensus 230 ai~~~~~~~~ 239 (333)
T 2q1w_A 230 ATVRAVDGVG 239 (333)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHhcCC
Confidence 9999987653
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.9e-26 Score=218.31 Aligned_cols=234 Identities=18% Similarity=0.216 Sum_probs=154.0
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+++|||||||||||++|+++|++.| ++|++++|+.+.......+.+ +
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G---~~V~~~~r~~~~~~~~~~~~~---------~--------------------- 55 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKG---YAVNTTVRDPDNQKKVSHLLE---------L--------------------- 55 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTT---CEEEEEESCTTCTTTTHHHHH---------H---------------------
T ss_pred CCEEEEECCchHHHHHHHHHHHHCC---CEEEEEEcCcchhhhHHHHHh---------c---------------------
Confidence 6799999999999999999999998 889998997543211111110 0
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh-hhH-HHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD-EHI-RTAYNINVKGTQTIL 205 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~-~~~-~~~~~~nv~~~~~ll 205 (366)
. ...++.++.+|+.+.+ .+..+++++|+|||+|+..... .+. .+.+++|+.++.+++
T Consensus 56 -------------~--~~~~~~~~~~Dl~d~~------~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll 114 (338)
T 2rh8_A 56 -------------Q--ELGDLKIFRADLTDEL------SFEAPIAGCDFVFHVATPVHFASEDPENDMIKPAIQGVVNVM 114 (338)
T ss_dssp -------------G--GGSCEEEEECCTTTSS------SSHHHHTTCSEEEEESSCCCC---------CHHHHHHHHHHH
T ss_pred -------------C--CCCcEEEEecCCCChH------HHHHHHcCCCEEEEeCCccCCCCCCcHHHHHHHHHHHHHHHH
Confidence 0 0146889999999987 6788889999999999975432 222 347899999999999
Q ss_pred HHHHhcCCCcEEEEeeCccee-cC---c--cccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHH
Q psy17528 206 ALAKRMKGLKSFVHVSTAYCN-CD---R--KFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKAT 279 (366)
Q Consensus 206 ~~a~~~~~~~~~v~iSS~~~~-~~---~--~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~ 279 (366)
+++.+.+++++|||+||..++ +. . .+++|+....+. . ..+.+ +..+.|+.+|..
T Consensus 115 ~aa~~~~~v~r~V~~SS~~~~~~~~~~~~~~~~~E~~~~~~~-~--------------~~~~~-----~~~~~Y~~sK~~ 174 (338)
T 2rh8_A 115 KACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIE-F--------------LTSAK-----PPTWGYPASKTL 174 (338)
T ss_dssp HHHHHCTTCCEEEEECCHHHHHHHHHTCSCCCCCTTTTTCC---------------------------CCCCCCTTSCCH
T ss_pred HHHHHcCCcCEEEEEecHHHeecCCcCCCCcccChhhccchh-h--------------ccccC-----CccchHHHHHHH
Confidence 999886348999999998633 21 1 144554322110 0 00000 001369999999
Q ss_pred HHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCC------CCcccCcccHHHHH
Q psy17528 280 AEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTD------PNISMDVVPGDRVI 351 (366)
Q Consensus 280 ~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~------~~~~~~~v~vdDva 351 (366)
+|.+++.+. ++++++++||++||||...+. .......+.....|.... +.. +...++|+|++|+|
T Consensus 175 ~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~i~v~Dva 247 (338)
T 2rh8_A 175 AEKAAWKFAEENNIDLITVIPTLMAGSSLTSD------VPSSIGLAMSLITGNEFL-INGMKGMQMLSGSVSIAHVEDVC 247 (338)
T ss_dssp HHHHHHHHHHHHTCCEEEEEECEEESCCSSSS------CCHHHHHHHHHHHTCHHH-HHHHHHHHHHHSSEEEEEHHHHH
T ss_pred HHHHHHHHHHHcCCcEEEEeCCceECCCCCCC------CCchHHHHHHHHcCCccc-cccccccccccCcccEEEHHHHH
Confidence 999998765 589999999999999976432 111111122223333211 110 01234899999999
Q ss_pred HHHHHHHHhhh
Q psy17528 352 NAMAALAWYFL 362 (366)
Q Consensus 352 ~ai~~~~~~~~ 362 (366)
++++.+++.+.
T Consensus 248 ~a~~~~~~~~~ 258 (338)
T 2rh8_A 248 RAHIFVAEKES 258 (338)
T ss_dssp HHHHHHHHCTT
T ss_pred HHHHHHHcCCC
Confidence 99999987643
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=6.4e-25 Score=231.34 Aligned_cols=235 Identities=14% Similarity=0.137 Sum_probs=173.4
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHh-CCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRC-CPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~-g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
.+++++|||||||||||++++++|++. | ++|++++|+..... .+
T Consensus 312 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~g---~~V~~~~r~~~~~~---------------~~----------------- 356 (660)
T 1z7e_A 312 ARRRTRVLILGVNGFIGNHLTERLLREDH---YEVYGLDIGSDAIS---------------RF----------------- 356 (660)
T ss_dssp --CCEEEEEETTTSHHHHHHHHHHHHSSS---EEEEEEESCCTTTG---------------GG-----------------
T ss_pred hccCceEEEEcCCcHHHHHHHHHHHhcCC---CEEEEEEcCchhhh---------------hh-----------------
Confidence 356789999999999999999999998 6 79999999754311 00
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh---hhhHHHHHHHHHHH
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF---DEHIRTAYNINVKG 200 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~---~~~~~~~~~~nv~~ 200 (366)
. ...++.++.+|+.+.+ ..+..+++++|+|||+||.... ..++...+++|+.+
T Consensus 357 -----------------~--~~~~v~~v~~Dl~d~~-----~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~g 412 (660)
T 1z7e_A 357 -----------------L--NHPHFHFVEGDISIHS-----EWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEE 412 (660)
T ss_dssp -----------------T--TCTTEEEEECCTTTCH-----HHHHHHHHHCSEEEECCCCCCTHHHHHSHHHHHHHHTHH
T ss_pred -----------------c--cCCceEEEECCCCCcH-----HHHHHhhcCCCEEEECceecCccccccCHHHHHHhhhHH
Confidence 0 1257889999999864 1266777899999999997653 34567789999999
Q ss_pred HHHHHHHHHhcCCCcEEEEeeCcceecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHH
Q psy17528 201 TQTILALAKRMKGLKSFVHVSTAYCNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKA 278 (366)
Q Consensus 201 ~~~ll~~a~~~~~~~~~v~iSS~~~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~ 278 (366)
+.++++++.+. + ++||++||.++|+... +++|+....+.. ......+.|+.+|+
T Consensus 413 t~~ll~aa~~~-~-~r~V~~SS~~vyg~~~~~~~~E~~~~~~~~----------------------p~~~p~~~Y~~sK~ 468 (660)
T 1z7e_A 413 NLRIIRYCVKY-R-KRIIFPSTSEVYGMCSDKYFDEDHSNLIVG----------------------PVNKPRWIYSVSKQ 468 (660)
T ss_dssp HHHHHHHHHHT-T-CEEEEECCGGGGBTCCSSSBCTTTCCEEEC----------------------CTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHh-C-CEEEEEecHHHcCCCCCcccCCCccccccC----------------------cccCCCCCcHHHHH
Confidence 99999999986 5 8999999998886532 344543211000 00011268999999
Q ss_pred HHHHHHHHhc--CCCCEEEEecCccccCCCCCCCccc-cccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHH
Q psy17528 279 TAEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWI-KGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMA 355 (366)
Q Consensus 279 ~~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~ 355 (366)
.+|.+++.+. .+++++++||++|||+...+..... .....+..++.....+.+..++++++..++|+|++|+|++++
T Consensus 469 ~~E~~~~~~~~~~gi~~~ilRpg~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~ai~ 548 (660)
T 1z7e_A 469 LLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALY 548 (660)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEECSEESTTSSCHHHHTTTCSCHHHHHHHHHHHTCCEEEEGGGCCEEECEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEECCCcccCCCccccccccccccchHHHHHHHHHcCCCcEEeCCCCeEEEEEEHHHHHHHHH
Confidence 9999998765 5899999999999999864310000 001123456666777877777777888999999999999999
Q ss_pred HHHHhhh
Q psy17528 356 ALAWYFL 362 (366)
Q Consensus 356 ~~~~~~~ 362 (366)
.+++.+.
T Consensus 549 ~~l~~~~ 555 (660)
T 1z7e_A 549 RIIENAG 555 (660)
T ss_dssp HHHHCGG
T ss_pred HHHhCcc
Confidence 9998754
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.2e-25 Score=208.60 Aligned_cols=196 Identities=18% Similarity=0.136 Sum_probs=156.6
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
|+|||||||||||++++++|+ .| ++|++++|+..
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g---~~V~~~~r~~~------------------------------------------ 34 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PV---GNLIALDVHSK------------------------------------------ 34 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TT---SEEEEECTTCS------------------------------------------
T ss_pred CeEEEECCCCHHHHHHHHHhh-cC---CeEEEeccccc------------------------------------------
Confidence 479999999999999999999 77 89999998631
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhC--cCEEEEcCcccCh---hhhHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQ--TTIIFHIAATVRF---DEHIRTAYNINVKGTQT 203 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~--~d~Vih~a~~~~~---~~~~~~~~~~nv~~~~~ 203 (366)
++.+|+.+.+ .+.+++++ +|+|||+|+.... ..++...+++|+.++.+
T Consensus 35 ---------------------~~~~D~~d~~------~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~ 87 (299)
T 1n2s_A 35 ---------------------EFCGDFSNPK------GVAETVRKLRPDVIVNAAAHTAVDKAESEPELAQLLNATSVEA 87 (299)
T ss_dssp ---------------------SSCCCTTCHH------HHHHHHHHHCCSEEEECCCCCCHHHHTTCHHHHHHHHTHHHHH
T ss_pred ---------------------cccccCCCHH------HHHHHHHhcCCCEEEECcccCCHhhhhcCHHHHHHHHHHHHHH
Confidence 2468888876 78888875 9999999997653 24567889999999999
Q ss_pred HHHHHHhcCCCcEEEEeeCcceecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHH
Q psy17528 204 ILALAKRMKGLKSFVHVSTAYCNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAE 281 (366)
Q Consensus 204 ll~~a~~~~~~~~~v~iSS~~~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E 281 (366)
+++++.+. ++ +|||+||.++|+... ++.|+..+.|. +.|+.+|..+|
T Consensus 88 l~~a~~~~-~~-~~v~~SS~~vy~~~~~~~~~E~~~~~p~-----------------------------~~Y~~sK~~~E 136 (299)
T 1n2s_A 88 IAKAANET-GA-WVVHYSTDYVFPGTGDIPWQETDATSPL-----------------------------NVYGKTKLAGE 136 (299)
T ss_dssp HHHHHTTT-TC-EEEEEEEGGGSCCCTTCCBCTTSCCCCS-----------------------------SHHHHHHHHHH
T ss_pred HHHHHHHc-CC-cEEEEecccEEeCCCCCCCCCCCCCCCc-----------------------------cHHHHHHHHHH
Confidence 99999886 55 899999999887543 45555444332 78999999999
Q ss_pred HHHHHhcCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhh
Q psy17528 282 DLVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 282 ~~l~~~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
++++.+. .+++++||+++||+... .+ ...++.....+....+.+ +..++|+|++|+|++++.+++.+
T Consensus 137 ~~~~~~~--~~~~ilRp~~v~G~~~~---~~------~~~~~~~~~~~~~~~~~~--~~~~~~i~v~Dva~~~~~~~~~~ 203 (299)
T 1n2s_A 137 KALQDNC--PKHLIFRTSWVYAGKGN---NF------AKTMLRLAKERQTLSVIN--DQYGAPTGAELLADCTAHAIRVA 203 (299)
T ss_dssp HHHHHHC--SSEEEEEECSEECSSSC---CH------HHHHHHHHHHCSEEEEEC--SCEECCEEHHHHHHHHHHHHHHH
T ss_pred HHHHHhC--CCeEEEeeeeecCCCcC---cH------HHHHHHHHhcCCCEEeec--CcccCCeeHHHHHHHHHHHHHHh
Confidence 9999885 49999999999998753 11 234455555666655554 47899999999999999999876
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.5e-25 Score=206.95 Aligned_cols=192 Identities=15% Similarity=0.133 Sum_probs=157.0
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
|++|+||||||+|+||++++++|++.| ++|++++|+....
T Consensus 1 m~~k~vlVTGasg~IG~~la~~L~~~G---~~V~~~~r~~~~~------------------------------------- 40 (267)
T 3rft_A 1 MAMKRLLVTGAAGQLGRVMRERLAPMA---EILRLADLSPLDP------------------------------------- 40 (267)
T ss_dssp CCEEEEEEESTTSHHHHHHHHHTGGGE---EEEEEEESSCCCC-------------------------------------
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcC---CEEEEEecCCccc-------------------------------------
Confidence 356899999999999999999999998 8999999986431
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTIL 205 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll 205 (366)
...++.++.+|+.+.+ .+..+++++|+||||||.. ....++..+++|+.++.+++
T Consensus 41 ------------------~~~~~~~~~~Dl~d~~------~~~~~~~~~D~vi~~Ag~~-~~~~~~~~~~~N~~g~~~l~ 95 (267)
T 3rft_A 41 ------------------AGPNEECVQCDLADAN------AVNAMVAGCDGIVHLGGIS-VEKPFEQILQGNIIGLYNLY 95 (267)
T ss_dssp ------------------CCTTEEEEECCTTCHH------HHHHHHTTCSEEEECCSCC-SCCCHHHHHHHHTHHHHHHH
T ss_pred ------------------cCCCCEEEEcCCCCHH------HHHHHHcCCCEEEECCCCc-CcCCHHHHHHHHHHHHHHHH
Confidence 1357899999999987 8999999999999999974 34567788999999999999
Q ss_pred HHHHhcCCCcEEEEeeCcceecCc---cccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHH
Q psy17528 206 ALAKRMKGLKSFVHVSTAYCNCDR---KFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAED 282 (366)
Q Consensus 206 ~~a~~~~~~~~~v~iSS~~~~~~~---~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~ 282 (366)
+++.+. +.++||++||..+++.. .++.|+....|. +.|+.+|...|.
T Consensus 96 ~a~~~~-~~~~iv~~SS~~~~g~~~~~~~~~e~~~~~~~-----------------------------~~Y~~sK~~~e~ 145 (267)
T 3rft_A 96 EAARAH-GQPRIVFASSNHTIGYYPQTERLGPDVPARPD-----------------------------GLYGVSKCFGEN 145 (267)
T ss_dssp HHHHHT-TCCEEEEEEEGGGGTTSBTTSCBCTTSCCCCC-----------------------------SHHHHHHHHHHH
T ss_pred HHHHHc-CCCEEEEEcchHHhCCCCCCCCCCCCCCCCCC-----------------------------ChHHHHHHHHHH
Confidence 999886 78899999999887532 234454433332 789999999999
Q ss_pred HHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHh
Q psy17528 283 LVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWY 360 (366)
Q Consensus 283 ~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~ 360 (366)
+++.+. .+++++++||+.|||+.. ++...++|++++|+++++..+++.
T Consensus 146 ~~~~~a~~~g~~~~~vr~~~v~~~~~------------------------------~~~~~~~~~~~~d~a~~~~~~~~~ 195 (267)
T 3rft_A 146 LARMYFDKFGQETALVRIGSCTPEPN------------------------------NYRMLSTWFSHDDFVSLIEAVFRA 195 (267)
T ss_dssp HHHHHHHHHCCCEEEEEECBCSSSCC------------------------------STTHHHHBCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCeEEEEEeecccCCCC------------------------------CCCceeeEEcHHHHHHHHHHHHhC
Confidence 998766 689999999999998632 234456788999999988888776
Q ss_pred hh
Q psy17528 361 FL 362 (366)
Q Consensus 361 ~~ 362 (366)
+.
T Consensus 196 ~~ 197 (267)
T 3rft_A 196 PV 197 (267)
T ss_dssp SC
T ss_pred CC
Confidence 53
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-24 Score=228.17 Aligned_cols=233 Identities=18% Similarity=0.146 Sum_probs=166.7
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCH-HHHHHHHhhhhhhhhhhhcCCCCCCccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSI-TQRVYNYFNDAVFDRMRLECPNYADKVDIGIT 122 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (366)
..+++++||||||+||||++++++|++.| ++|++++|....... .+++...
T Consensus 7 ~~~~~~~ilVTGatG~IG~~l~~~L~~~G---~~V~~~~r~~~~~~~~~~~l~~~------------------------- 58 (699)
T 1z45_A 7 SESTSKIVLVTGGAGYIGSHTVVELIENG---YDCVVADNLSNSTYDSVARLEVL------------------------- 58 (699)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCSSCCTHHHHHHHHH-------------------------
T ss_pred cccCCCEEEEECCCCHHHHHHHHHHHHCc---CEEEEEECCCcchHHHHHHHhhc-------------------------
Confidence 34567899999999999999999999998 899999997643221 1111110
Q ss_pred cccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccChh---hhHHHHHHHH
Q psy17528 123 HRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRFD---EHIRTAYNIN 197 (366)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~~---~~~~~~~~~n 197 (366)
...++.++.+|+.+.+ .+.++++ ++|+|||+||..... ....+.+++|
T Consensus 59 ---------------------~~~~v~~v~~Dl~d~~------~l~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~N 111 (699)
T 1z45_A 59 ---------------------TKHHIPFYEVDLCDRK------GLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNN 111 (699)
T ss_dssp ---------------------HTSCCCEEECCTTCHH------HHHHHHHHSCCCEEEECCSCCCHHHHHHSHHHHHHHH
T ss_pred ---------------------cCCceEEEEcCCCCHH------HHHHHHHhCCCCEEEECCcccCcCccccCHHHHHHHH
Confidence 0146778999999876 7888887 899999999976532 3456788999
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEeeCcceecCcc------ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCc
Q psy17528 198 VKGTQTILALAKRMKGLKSFVHVSTAYCNCDRK------FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPN 271 (366)
Q Consensus 198 v~~~~~ll~~a~~~~~~~~~v~iSS~~~~~~~~------~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (366)
+.++.++++++++. ++++||++||.++|+... ++.|.....| .+
T Consensus 112 v~gt~~ll~a~~~~-~~~~iV~~SS~~vyg~~~~~~~~~~~~E~~~~~p-----------------------------~~ 161 (699)
T 1z45_A 112 ILGTVVLLELMQQY-NVSKFVFSSSATVYGDATRFPNMIPIPEECPLGP-----------------------------TN 161 (699)
T ss_dssp HHHHHHHHHHHHHH-TCCEEEEEEEGGGGCCGGGSTTCCSBCTTSCCCC-----------------------------CS
T ss_pred HHHHHHHHHHHHHc-CCCEEEEECcHHHhCCCccccccCCccccCCCCC-----------------------------CC
Confidence 99999999999886 788999999998886532 2333322222 27
Q ss_pred hHHHHHHHHHHHHHHhc----CCCCEEEEecCccccCCCCCCCcccc-c-cchHHHHHHHHhcC--cceeecC------C
Q psy17528 272 SYTLTKATAEDLVRQVG----HELPICVLRPSIVFPTLQEPMPLWIK-G-FNGVMALALGAGTG--LIRVVQT------D 337 (366)
Q Consensus 272 ~Y~~sK~~~E~~l~~~~----~gl~~~ilRp~~v~G~~~~~~~~~~~-~-~~~~~~~~~~~~~g--~~~~l~~------~ 337 (366)
.|+.+|+.+|++++.+. .+++++++||++|||+......+... . ...+..++.....+ ....+++ +
T Consensus 162 ~Y~~sK~~~E~~~~~~~~~~~~g~~~~ilR~~~vyG~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 241 (699)
T 1z45_A 162 PYGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRD 241 (699)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------CC
T ss_pred hHHHHHHHHHHHHHHHHHhccCCCcEEEEEeccccCCCcccccccccccchhHHHHHHHHHHhcCCCceEEeCCcccCCC
Confidence 89999999999998764 48999999999999986432111100 0 11223344444433 3444444 5
Q ss_pred CCcccCcccHHHHHHHHHHHHHhh
Q psy17528 338 PNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 338 ~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
++..++|||++|+|++++.+++..
T Consensus 242 g~~~~~~i~v~Dva~a~~~a~~~~ 265 (699)
T 1z45_A 242 GTPIRDYIHVVDLAKGHIAALQYL 265 (699)
T ss_dssp SSCEECEEEHHHHHHHHHHHHHHH
T ss_pred CCeeEeeEEHHHHHHHHHHHHhhh
Confidence 788899999999999999998754
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-24 Score=213.03 Aligned_cols=229 Identities=16% Similarity=0.090 Sum_probs=166.7
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
++||||||+||||++++++|++.| ++|++++|+.+.... +++. .+...
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g---~~V~~~~r~~~~~~~-~~~~---------~~~~~------------------- 76 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKG---YEVHGLIRRSSNFNT-QRIN---------HIYID------------------- 76 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCCSSCCC-TTTT---------TTC---------------------
T ss_pred CeEEEEcCCchHHHHHHHHHHHCC---CEEEEEecCCccccc-hhhh---------hhhhc-------------------
Confidence 689999999999999999999998 899999997643100 0000 00000
Q ss_pred cchhhhhhccccCCCCCC-cEEEEeccCCcCCCCCCHHHHHHHHhC--cCEEEEcCcccChh---hhHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYAD-KVDIVCGQLEADTFGLSARDEELLISQ--TTIIFHIAATVRFD---EHIRTAYNINVKGTQ 202 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~-~i~~~~gDl~~~~~gl~~~~~~~~~~~--~d~Vih~a~~~~~~---~~~~~~~~~nv~~~~ 202 (366)
...... ++.++.+|+.+.+ .+.+++++ +|+|||+||..... ..+...+++|+.++.
T Consensus 77 ------------~~~~~~~~~~~~~~Dl~d~~------~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~ 138 (381)
T 1n7h_A 77 ------------PHNVNKALMKLHYADLTDAS------SLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGAL 138 (381)
T ss_dssp ------------------CCEEEEECCTTCHH------HHHHHHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHH
T ss_pred ------------cccccccceEEEECCCCCHH------HHHHHHHhcCCCEEEECCcccCccccccCHHHHHHHHHHHHH
Confidence 000112 7889999999876 77787775 69999999976543 456778899999999
Q ss_pred HHHHHHHhcCCCc-----EEEEeeCcceecCcc-ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHH
Q psy17528 203 TILALAKRMKGLK-----SFVHVSTAYCNCDRK-FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLT 276 (366)
Q Consensus 203 ~ll~~a~~~~~~~-----~~v~iSS~~~~~~~~-~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~s 276 (366)
++++++.+. +++ +||++||.++|+... +++|+....|. +.|+.+
T Consensus 139 ~l~~a~~~~-~~~~~~~~~~v~~SS~~vyg~~~~~~~E~~~~~~~-----------------------------~~Y~~s 188 (381)
T 1n7h_A 139 RLLEAVRSH-TIDSGRTVKYYQAGSSEMFGSTPPPQSETTPFHPR-----------------------------SPYAAS 188 (381)
T ss_dssp HHHHHHHHH-HHHHCCCCEEEEEEEGGGGTTSCSSBCTTSCCCCC-----------------------------SHHHHH
T ss_pred HHHHHHHHh-CCccCCccEEEEeCcHHHhCCCCCCCCCCCCCCCC-----------------------------CchHHH
Confidence 999999875 454 999999999887532 44554433332 789999
Q ss_pred HHHHHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcc-eeecCCCCcccCcccHHHHHHH
Q psy17528 277 KATAEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLI-RVVQTDPNISMDVVPGDRVINA 353 (366)
Q Consensus 277 K~~~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~l~~~~~~~~~~v~vdDva~a 353 (366)
|+.+|.+++.+. .+++++++|++++|||+... .+.. ..+..++.....|.. ...+++++..++|+|++|+|++
T Consensus 189 K~~~E~~~~~~~~~~~~~~~~~r~~~~~gp~~~~--~~~~--~~~~~~~~~~~~g~~~~~~~g~~~~~~~~v~v~Dva~a 264 (381)
T 1n7h_A 189 KCAAHWYTVNYREAYGLFACNGILFNHESPRRGE--NFVT--RKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVEA 264 (381)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCT--TSHH--HHHHHHHHHHHHTSCCCEEESCTTCEEECEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcEEEEEeCceeCCCCCC--cchh--HHHHHHHHHHHcCCCCeEEeCCCCceeeeEEHHHHHHH
Confidence 999999998876 58999999999999997542 1110 112334445555543 3345777889999999999999
Q ss_pred HHHHHHhh
Q psy17528 354 MAALAWYF 361 (366)
Q Consensus 354 i~~~~~~~ 361 (366)
++.+++.+
T Consensus 265 ~~~~~~~~ 272 (381)
T 1n7h_A 265 MWLMLQQE 272 (381)
T ss_dssp HHHHHTSS
T ss_pred HHHHHhCC
Confidence 99998764
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.1e-25 Score=209.77 Aligned_cols=204 Identities=20% Similarity=0.157 Sum_probs=134.9
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+|+|||||||||||++++++|++.| ++|++++|+...
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~---------------------------------------- 38 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNN---WHAVGCGFRRAR---------------------------------------- 38 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTT---CEEEEEC---------------------------------------------
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCC---CeEEEEccCCCC----------------------------------------
Confidence 5799999999999999999999998 899999986321
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccCh---hhhHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRF---DEHIRTAYNINVKGTQ 202 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~---~~~~~~~~~~nv~~~~ 202 (366)
++ ++.+|+.+.+ .+.++++ ++|+|||+||.... ..++...+++|+.++.
T Consensus 39 ------------------~~--~~~~Dl~d~~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~ 92 (315)
T 2ydy_A 39 ------------------PK--FEQVNLLDSN------AVHHIIHDFQPHVIVHCAAERRPDVVENQPDAASQLNVDASG 92 (315)
T ss_dssp ---------------------------------------CHHHHHHHCCSEEEECC-------------------CHHHH
T ss_pred ------------------CC--eEEecCCCHH------HHHHHHHhhCCCEEEECCcccChhhhhcCHHHHHHHHHHHHH
Confidence 11 6778999876 6777776 48999999997543 2456678899999999
Q ss_pred HHHHHHHhcCCCcEEEEeeCcceecC-ccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHH
Q psy17528 203 TILALAKRMKGLKSFVHVSTAYCNCD-RKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAE 281 (366)
Q Consensus 203 ~ll~~a~~~~~~~~~v~iSS~~~~~~-~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E 281 (366)
++++++.+. +. +|||+||.++|+. ..+++|+..+.|. +.|+.+|..+|
T Consensus 93 ~l~~a~~~~-~~-~~v~~SS~~v~~~~~~~~~E~~~~~~~-----------------------------~~Y~~sK~~~e 141 (315)
T 2ydy_A 93 NLAKEAAAV-GA-FLIYISSDYVFDGTNPPYREEDIPAPL-----------------------------NLYGKTKLDGE 141 (315)
T ss_dssp HHHHHHHHH-TC-EEEEEEEGGGSCSSSCSBCTTSCCCCC-----------------------------SHHHHHHHHHH
T ss_pred HHHHHHHHc-CC-eEEEEchHHHcCCCCCCCCCCCCCCCc-----------------------------CHHHHHHHHHH
Confidence 999999886 44 9999999998865 2345555433332 78999999999
Q ss_pred HHHHHhcCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHh-cCcceeecCCCCcccCcccHHHHHHHHHHHHHh
Q psy17528 282 DLVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAG-TGLIRVVQTDPNISMDVVPGDRVINAMAALAWY 360 (366)
Q Consensus 282 ~~l~~~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~ 360 (366)
.+++.+ +++++++||+.|||+...+...+. ..++.... .+....+. ++..++++|++|+|++++.+++.
T Consensus 142 ~~~~~~--~~~~~~lR~~~v~G~~~~~~~~~~------~~~~~~~~~~~~~~~~~--~~~~~~~i~v~Dva~a~~~~~~~ 211 (315)
T 2ydy_A 142 KAVLEN--NLGAAVLRIPILYGEVEKLEESAV------TVMFDKVQFSNKSANMD--HWQQRFPTHVKDVATVCRQLAEK 211 (315)
T ss_dssp HHHHHH--CTTCEEEEECSEECSCSSGGGSTT------GGGHHHHHCCSSCEEEE--CSSBBCCEEHHHHHHHHHHHHHH
T ss_pred HHHHHh--CCCeEEEeeeeeeCCCCcccccHH------HHHHHHHHhcCCCeeec--cCceECcEEHHHHHHHHHHHHHh
Confidence 999988 478899999999999765221222 11233344 55544443 46788999999999999999876
Q ss_pred h
Q psy17528 361 F 361 (366)
Q Consensus 361 ~ 361 (366)
+
T Consensus 212 ~ 212 (315)
T 2ydy_A 212 R 212 (315)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-24 Score=204.04 Aligned_cols=193 Identities=19% Similarity=0.151 Sum_probs=153.6
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
.++|||||||||||++++++|++.| ++|++++|+
T Consensus 12 ~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~------------------------------------------- 45 (292)
T 1vl0_A 12 HMKILITGANGQLGREIQKQLKGKN---VEVIPTDVQ------------------------------------------- 45 (292)
T ss_dssp CEEEEEESTTSHHHHHHHHHHTTSS---EEEEEECTT-------------------------------------------
T ss_pred cceEEEECCCChHHHHHHHHHHhCC---CeEEeccCc-------------------------------------------
Confidence 5799999999999999999999998 889998884
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccCh---hhhHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRF---DEHIRTAYNINVKGTQ 202 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~---~~~~~~~~~~nv~~~~ 202 (366)
.+|+.+.+ .+.++++ ++|+|||+||.... ..++...+++|+.++.
T Consensus 46 ------------------------~~Dl~d~~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~ 95 (292)
T 1vl0_A 46 ------------------------DLDITNVL------AVNKFFNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIGPK 95 (292)
T ss_dssp ------------------------TCCTTCHH------HHHHHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHH
T ss_pred ------------------------cCCCCCHH------HHHHHHHhcCCCEEEECCccCCHHHHhcCHHHHHHHHHHHHH
Confidence 25677665 6777777 79999999997653 2456788999999999
Q ss_pred HHHHHHHhcCCCcEEEEeeCcceecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHH
Q psy17528 203 TILALAKRMKGLKSFVHVSTAYCNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATA 280 (366)
Q Consensus 203 ~ll~~a~~~~~~~~~v~iSS~~~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~ 280 (366)
++++++.+. ++ +||++||.++|+... +++|+..+.|. +.|+.+|+.+
T Consensus 96 ~l~~a~~~~-~~-~iv~~SS~~v~~~~~~~~~~E~~~~~~~-----------------------------~~Y~~sK~~~ 144 (292)
T 1vl0_A 96 NLAAAAYSV-GA-EIVQISTDYVFDGEAKEPITEFDEVNPQ-----------------------------SAYGKTKLEG 144 (292)
T ss_dssp HHHHHHHHH-TC-EEEEEEEGGGSCSCCSSCBCTTSCCCCC-----------------------------SHHHHHHHHH
T ss_pred HHHHHHHHc-CC-eEEEechHHeECCCCCCCCCCCCCCCCc-----------------------------cHHHHHHHHH
Confidence 999999887 56 999999998887533 55565444332 7899999999
Q ss_pred HHHHHHhcCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHh
Q psy17528 281 EDLVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWY 360 (366)
Q Consensus 281 E~~l~~~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~ 360 (366)
|.+++.+. .+++++||+.|||+ .. .+ ...++.....+....+.+ +..++|+|++|+|++++.+++.
T Consensus 145 E~~~~~~~--~~~~~lR~~~v~G~-~~---~~------~~~~~~~~~~~~~~~~~~--~~~~~~i~v~Dva~~~~~~~~~ 210 (292)
T 1vl0_A 145 ENFVKALN--PKYYIVRTAWLYGD-GN---NF------VKTMINLGKTHDELKVVH--DQVGTPTSTVDLARVVLKVIDE 210 (292)
T ss_dssp HHHHHHHC--SSEEEEEECSEESS-SS---CH------HHHHHHHHHHCSEEEEES--SCEECCEEHHHHHHHHHHHHHH
T ss_pred HHHHHhhC--CCeEEEeeeeeeCC-Cc---Ch------HHHHHHHHhcCCcEEeec--CeeeCCccHHHHHHHHHHHHhc
Confidence 99999885 57999999999998 32 11 133444455565555553 4789999999999999999876
Q ss_pred h
Q psy17528 361 F 361 (366)
Q Consensus 361 ~ 361 (366)
+
T Consensus 211 ~ 211 (292)
T 1vl0_A 211 K 211 (292)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.3e-25 Score=201.15 Aligned_cols=191 Identities=15% Similarity=0.134 Sum_probs=150.5
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
|+|||||||||||++++++|++.| ++|++++|+.+...
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g---~~V~~~~R~~~~~~--------------------------------------- 38 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTD---YQIYAGARKVEQVP--------------------------------------- 38 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSS---CEEEEEESSGGGSC---------------------------------------
T ss_pred CeEEEECCCCHHHHHHHHHHHHCC---CEEEEEECCccchh---------------------------------------
Confidence 489999999999999999999998 89999999854211
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCc-CCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEA-DTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILAL 207 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~-~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll~~ 207 (366)
...++.++.+|+.+ .+ .+.++++++|+|||+||... ...+++|+.++.+++++
T Consensus 39 ---------------~~~~~~~~~~D~~d~~~------~~~~~~~~~d~vi~~ag~~~-----~~~~~~n~~~~~~l~~a 92 (219)
T 3dqp_A 39 ---------------QYNNVKAVHFDVDWTPE------EMAKQLHGMDAIINVSGSGG-----KSLLKVDLYGAVKLMQA 92 (219)
T ss_dssp ---------------CCTTEEEEECCTTSCHH------HHHTTTTTCSEEEECCCCTT-----SSCCCCCCHHHHHHHHH
T ss_pred ---------------hcCCceEEEecccCCHH------HHHHHHcCCCEEEECCcCCC-----CCcEeEeHHHHHHHHHH
Confidence 01578999999999 66 78888899999999999754 22667899999999999
Q ss_pred HHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHHh
Q psy17528 208 AKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQV 287 (366)
Q Consensus 208 a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~ 287 (366)
+++. ++++||++||.+++... +..| ..+ .+ .+.|+.+|..+|++++..
T Consensus 93 ~~~~-~~~~iv~~SS~~~~~~~-~~~e-~~~-----------------------~~------~~~Y~~sK~~~e~~~~~~ 140 (219)
T 3dqp_A 93 AEKA-EVKRFILLSTIFSLQPE-KWIG-AGF-----------------------DA------LKDYYIAKHFADLYLTKE 140 (219)
T ss_dssp HHHT-TCCEEEEECCTTTTCGG-GCCS-HHH-----------------------HH------THHHHHHHHHHHHHHHHS
T ss_pred HHHh-CCCEEEEECcccccCCC-cccc-ccc-----------------------cc------ccHHHHHHHHHHHHHHhc
Confidence 9986 78899999998876432 1111 000 00 278999999999999633
Q ss_pred cCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhhhhcC
Q psy17528 288 GHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYFLFSC 365 (366)
Q Consensus 288 ~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~~~~ 365 (366)
.+++++++||+.+||+.... .. . . ++..+++++++|+|++++.+++++...|
T Consensus 141 -~~i~~~ilrp~~v~g~~~~~---~~-------------------~-~--~~~~~~~i~~~Dva~~i~~~l~~~~~~g 192 (219)
T 3dqp_A 141 -TNLDYTIIQPGALTEEEATG---LI-------------------D-I--NDEVSASNTIGDVADTIKELVMTDHSIG 192 (219)
T ss_dssp -CCCEEEEEEECSEECSCCCS---EE-------------------E-E--SSSCCCCEEHHHHHHHHHHHHTCGGGTT
T ss_pred -cCCcEEEEeCceEecCCCCC---cc-------------------c-c--CCCcCCcccHHHHHHHHHHHHhCccccC
Confidence 58999999999999985421 00 0 1 2567899999999999999998876433
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-24 Score=197.62 Aligned_cols=200 Identities=16% Similarity=0.172 Sum_probs=150.1
Q ss_pred ccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccc
Q psy17528 42 IQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGI 121 (366)
Q Consensus 42 ~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (366)
....+++|+||||||||+||++++++|++.| ++|++++|+.+.. +.+.
T Consensus 15 ~~~~l~~~~ilVtGatG~iG~~l~~~L~~~G---~~V~~~~R~~~~~---~~~~-------------------------- 62 (236)
T 3e8x_A 15 ENLYFQGMRVLVVGANGKVARYLLSELKNKG---HEPVAMVRNEEQG---PELR-------------------------- 62 (236)
T ss_dssp ------CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSGGGH---HHHH--------------------------
T ss_pred cccCcCCCeEEEECCCChHHHHHHHHHHhCC---CeEEEEECChHHH---HHHH--------------------------
Confidence 3455678999999999999999999999998 8999999985421 1111
Q ss_pred ccccccccchhhhhhccccCCCCCCcE-EEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHH
Q psy17528 122 THRVYNYFNDAVFDRMRLECPNYADKV-DIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKG 200 (366)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~ 200 (366)
..++ .++.+|+. + .+.+.+.++|+|||+||... ...+...+++|+.+
T Consensus 63 -----------------------~~~~~~~~~~Dl~--~------~~~~~~~~~D~vi~~ag~~~-~~~~~~~~~~n~~~ 110 (236)
T 3e8x_A 63 -----------------------ERGASDIVVANLE--E------DFSHAFASIDAVVFAAGSGP-HTGADKTILIDLWG 110 (236)
T ss_dssp -----------------------HTTCSEEEECCTT--S------CCGGGGTTCSEEEECCCCCT-TSCHHHHHHTTTHH
T ss_pred -----------------------hCCCceEEEcccH--H------HHHHHHcCCCEEEECCCCCC-CCCccccchhhHHH
Confidence 0357 88999998 3 45677789999999999754 35677889999999
Q ss_pred HHHHHHHHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHH
Q psy17528 201 TQTILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATA 280 (366)
Q Consensus 201 ~~~ll~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~ 280 (366)
+.++++++++. ++++||++||..+... +..+ .+ ...|+.+|..+
T Consensus 111 ~~~l~~a~~~~-~~~~iv~~SS~~~~~~-----~~~~-~~-----------------------------~~~Y~~sK~~~ 154 (236)
T 3e8x_A 111 AIKTIQEAEKR-GIKRFIMVSSVGTVDP-----DQGP-MN-----------------------------MRHYLVAKRLA 154 (236)
T ss_dssp HHHHHHHHHHH-TCCEEEEECCTTCSCG-----GGSC-GG-----------------------------GHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCEEEEEecCCCCCC-----CCCh-hh-----------------------------hhhHHHHHHHH
Confidence 99999999887 7889999999554321 1000 11 17899999999
Q ss_pred HHHHHHhcCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHh
Q psy17528 281 EDLVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWY 360 (366)
Q Consensus 281 E~~l~~~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~ 360 (366)
|.+++.. +++++++||+.++|+.... . ......+...+++++++|+|++++.+++.
T Consensus 155 e~~~~~~--gi~~~~lrpg~v~~~~~~~---------------------~-~~~~~~~~~~~~~i~~~Dva~~~~~~~~~ 210 (236)
T 3e8x_A 155 DDELKRS--SLDYTIVRPGPLSNEESTG---------------------K-VTVSPHFSEITRSITRHDVAKVIAELVDQ 210 (236)
T ss_dssp HHHHHHS--SSEEEEEEECSEECSCCCS---------------------E-EEEESSCSCCCCCEEHHHHHHHHHHHTTC
T ss_pred HHHHHHC--CCCEEEEeCCcccCCCCCC---------------------e-EEeccCCCcccCcEeHHHHHHHHHHHhcC
Confidence 9999854 7999999999999985421 0 11122344568999999999999999988
Q ss_pred hhhcC
Q psy17528 361 FLFSC 365 (366)
Q Consensus 361 ~~~~~ 365 (366)
+...|
T Consensus 211 ~~~~g 215 (236)
T 3e8x_A 211 QHTIG 215 (236)
T ss_dssp GGGTT
T ss_pred ccccC
Confidence 75433
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.9e-24 Score=199.73 Aligned_cols=193 Identities=16% Similarity=0.096 Sum_probs=149.3
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+|+|||||| ||||++++++|++.| ++|++++|+.... +.+.
T Consensus 5 ~~~ilVtGa-G~iG~~l~~~L~~~g---~~V~~~~r~~~~~---~~~~-------------------------------- 45 (286)
T 3ius_A 5 TGTLLSFGH-GYTARVLSRALAPQG---WRIIGTSRNPDQM---EAIR-------------------------------- 45 (286)
T ss_dssp CCEEEEETC-CHHHHHHHHHHGGGT---CEEEEEESCGGGH---HHHH--------------------------------
T ss_pred cCcEEEECC-cHHHHHHHHHHHHCC---CEEEEEEcChhhh---hhHh--------------------------------
Confidence 479999998 999999999999998 8999999975421 1110
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILAL 207 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll~~ 207 (366)
..+++++.+|+.+. + +.++|+|||+|+....... .+.+++++
T Consensus 46 -----------------~~~~~~~~~D~~d~-------~----~~~~d~vi~~a~~~~~~~~----------~~~~l~~a 87 (286)
T 3ius_A 46 -----------------ASGAEPLLWPGEEP-------S----LDGVTHLLISTAPDSGGDP----------VLAALGDQ 87 (286)
T ss_dssp -----------------HTTEEEEESSSSCC-------C----CTTCCEEEECCCCBTTBCH----------HHHHHHHH
T ss_pred -----------------hCCCeEEEeccccc-------c----cCCCCEEEECCCccccccH----------HHHHHHHH
Confidence 14688999999873 2 6789999999997543211 23567788
Q ss_pred HHhc-CCCcEEEEeeCcceecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHH
Q psy17528 208 AKRM-KGLKSFVHVSTAYCNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLV 284 (366)
Q Consensus 208 a~~~-~~~~~~v~iSS~~~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l 284 (366)
+++. .++++|||+||+++|+... +++|+..+.|. +.|+.+|+.+|+++
T Consensus 88 ~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E~~~~~p~-----------------------------~~Y~~sK~~~E~~~ 138 (286)
T 3ius_A 88 IAARAAQFRWVGYLSTTAVYGDHDGAWVDETTPLTPT-----------------------------AARGRWRVMAEQQW 138 (286)
T ss_dssp HHHTGGGCSEEEEEEEGGGGCCCTTCEECTTSCCCCC-----------------------------SHHHHHHHHHHHHH
T ss_pred HHhhcCCceEEEEeecceecCCCCCCCcCCCCCCCCC-----------------------------CHHHHHHHHHHHHH
Confidence 7773 3788999999999887543 46666554443 78999999999999
Q ss_pred HHhcCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 285 RQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 285 ~~~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
+++ .+++++++||++|||++..+.. .+..|....+.++ ...++|+|++|+|++++.+++++.
T Consensus 139 ~~~-~~~~~~ilRp~~v~G~~~~~~~--------------~~~~~~~~~~~~~-~~~~~~i~v~Dva~a~~~~~~~~~ 200 (286)
T 3ius_A 139 QAV-PNLPLHVFRLAGIYGPGRGPFS--------------KLGKGGIRRIIKP-GQVFSRIHVEDIAQVLAASMARPD 200 (286)
T ss_dssp HHS-TTCCEEEEEECEEEBTTBSSST--------------TSSSSCCCEEECT-TCCBCEEEHHHHHHHHHHHHHSCC
T ss_pred Hhh-cCCCEEEEeccceECCCchHHH--------------HHhcCCccccCCC-CcccceEEHHHHHHHHHHHHhCCC
Confidence 998 5899999999999999865421 2235555555544 578999999999999999998765
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-24 Score=202.21 Aligned_cols=190 Identities=17% Similarity=0.148 Sum_probs=153.3
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+++|||||||||||++++++|++.| ++|++++|+....
T Consensus 2 ~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~--------------------------------------- 39 (267)
T 3ay3_A 2 LNRLLVTGAAGGVGSAIRPHLGTLA---HEVRLSDIVDLGA--------------------------------------- 39 (267)
T ss_dssp EEEEEEESTTSHHHHHHGGGGGGTE---EEEEECCSSCCCC---------------------------------------
T ss_pred CceEEEECCCCHHHHHHHHHHHhCC---CEEEEEeCCCccc---------------------------------------
Confidence 3689999999999999999999998 8999999975421
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILAL 207 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll~~ 207 (366)
...++.++.+|+.+.+ .+.++++++|+|||+|+... ...+...+++|+.++.+++++
T Consensus 40 ----------------~~~~~~~~~~Dl~d~~------~~~~~~~~~d~vi~~a~~~~-~~~~~~~~~~n~~~~~~l~~a 96 (267)
T 3ay3_A 40 ----------------AEAHEEIVACDLADAQ------AVHDLVKDCDGIIHLGGVSV-ERPWNDILQANIIGAYNLYEA 96 (267)
T ss_dssp ----------------CCTTEEECCCCTTCHH------HHHHHHTTCSEEEECCSCCS-CCCHHHHHHHTHHHHHHHHHH
T ss_pred ----------------cCCCccEEEccCCCHH------HHHHHHcCCCEEEECCcCCC-CCCHHHHHHHHHHHHHHHHHH
Confidence 0135788999999876 78889999999999999752 345677889999999999999
Q ss_pred HHhcCCCcEEEEeeCcceecCc---cccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHH
Q psy17528 208 AKRMKGLKSFVHVSTAYCNCDR---KFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLV 284 (366)
Q Consensus 208 a~~~~~~~~~v~iSS~~~~~~~---~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l 284 (366)
+.+. ++++||++||..+++.. .++.|+..+.|. +.|+.+|+..|.++
T Consensus 97 ~~~~-~~~~iv~~SS~~~~~~~~~~~~~~E~~~~~~~-----------------------------~~Y~~sK~~~e~~~ 146 (267)
T 3ay3_A 97 ARNL-GKPRIVFASSNHTIGYYPRTTRIDTEVPRRPD-----------------------------SLYGLSKCFGEDLA 146 (267)
T ss_dssp HHHT-TCCEEEEEEEGGGSTTSBTTSCBCTTSCCCCC-----------------------------SHHHHHHHHHHHHH
T ss_pred HHHh-CCCEEEEeCCHHHhCCCCCCCCCCCCCCCCCC-----------------------------ChHHHHHHHHHHHH
Confidence 9886 78899999999888642 245555433332 78999999999999
Q ss_pred HHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 285 RQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 285 ~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
+.+. .+++++++||+.+|+... +++..++|++++|+|++++.+++.+.
T Consensus 147 ~~~~~~~gi~~~~lrp~~v~~~~~------------------------------~~~~~~~~~~~~dva~~~~~~~~~~~ 196 (267)
T 3ay3_A 147 SLYYHKFDIETLNIRIGSCFPKPK------------------------------DARMMATWLSVDDFMRLMKRAFVAPK 196 (267)
T ss_dssp HHHHHTTCCCEEEEEECBCSSSCC------------------------------SHHHHHHBCCHHHHHHHHHHHHHSSC
T ss_pred HHHHHHcCCCEEEEeceeecCCCC------------------------------CCCeeeccccHHHHHHHHHHHHhCCC
Confidence 8765 689999999999995310 11235689999999999999988753
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=99.92 E-value=8.7e-24 Score=193.84 Aligned_cols=201 Identities=20% Similarity=0.124 Sum_probs=153.5
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCcc--EEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIR--KIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~--~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
|++|+|+||||+|+||++++++|++.| + +|++++|+......
T Consensus 16 m~~~~vlVtGasg~iG~~l~~~L~~~G---~~~~V~~~~r~~~~~~~--------------------------------- 59 (242)
T 2bka_A 16 MQNKSVFILGASGETGRVLLKEILEQG---LFSKVTLIGRRKLTFDE--------------------------------- 59 (242)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHT---CCSEEEEEESSCCCCCS---------------------------------
T ss_pred hcCCeEEEECCCcHHHHHHHHHHHcCC---CCCEEEEEEcCCCCccc---------------------------------
Confidence 567899999999999999999999998 6 99999998653210
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHH
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQT 203 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ 203 (366)
.....+.++.+|+.+.+ .+..+++++|+||||||........+..+++|+.++.+
T Consensus 60 -------------------~~~~~~~~~~~D~~d~~------~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~n~~~~~~ 114 (242)
T 2bka_A 60 -------------------EAYKNVNQEVVDFEKLD------DYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLK 114 (242)
T ss_dssp -------------------GGGGGCEEEECCGGGGG------GGGGGGSSCSEEEECCCCCHHHHHHHHHHHHHTHHHHH
T ss_pred -------------------cccCCceEEecCcCCHH------HHHHHhcCCCEEEECCCcccccCCcccceeeeHHHHHH
Confidence 00135778999999987 77888889999999999765555567788999999999
Q ss_pred HHHHHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHH
Q psy17528 204 ILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDL 283 (366)
Q Consensus 204 ll~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~ 283 (366)
+++++.+. +.++||++||.+++... .+.|+.+|...|.+
T Consensus 115 ~~~~~~~~-~~~~iv~~SS~~~~~~~----------------------------------------~~~Y~~sK~~~e~~ 153 (242)
T 2bka_A 115 SAELAKAG-GCKHFNLLSSKGADKSS----------------------------------------NFLYLQVKGEVEAK 153 (242)
T ss_dssp HHHHHHHT-TCCEEEEECCTTCCTTC----------------------------------------SSHHHHHHHHHHHH
T ss_pred HHHHHHHC-CCCEEEEEccCcCCCCC----------------------------------------cchHHHHHHHHHHH
Confidence 99999886 77899999999876421 16799999999999
Q ss_pred HHHhcCCC-CEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 284 VRQVGHEL-PICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 284 l~~~~~gl-~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
++.. ++ +++++||+.|||+...+. . ...+........+ ..+ ....+++++|+|++++.++..+.
T Consensus 154 ~~~~--~~~~~~~vrpg~v~~~~~~~~------~--~~~~~~~~~~~~~-~~~----~~~~~~~~~dva~~~~~~~~~~~ 218 (242)
T 2bka_A 154 VEEL--KFDRYSVFRPGVLLCDRQESR------P--GEWLVRKFFGSLP-DSW----ASGHSVPVVTVVRAMLNNVVRPR 218 (242)
T ss_dssp HHTT--CCSEEEEEECCEEECTTGGGS------H--HHHHHHHHHCSCC-TTG----GGGTEEEHHHHHHHHHHHHTSCC
T ss_pred HHhc--CCCCeEEEcCceecCCCCCCc------H--HHHHHHHhhcccC-ccc----cCCcccCHHHHHHHHHHHHhCcc
Confidence 9876 57 599999999999865321 0 0112222222211 111 12358999999999999998765
Q ss_pred h
Q psy17528 363 F 363 (366)
Q Consensus 363 ~ 363 (366)
.
T Consensus 219 ~ 219 (242)
T 2bka_A 219 D 219 (242)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-23 Score=203.75 Aligned_cols=218 Identities=17% Similarity=0.072 Sum_probs=159.5
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCC--CccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCP--QIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~--~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+|+|||||||||||++++++|++.|. ..++|++++|+.....
T Consensus 1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~------------------------------------ 44 (364)
T 2v6g_A 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW------------------------------------ 44 (364)
T ss_dssp CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC------------------------------------
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc------------------------------------
Confidence 36899999999999999999999861 1258999999864310
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhC---cCEEEEcCcccChhhhHHHHHHHHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQ---TTIIFHIAATVRFDEHIRTAYNINVKGTQ 202 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~---~d~Vih~a~~~~~~~~~~~~~~~nv~~~~ 202 (366)
....++.++.+|+.+.+ .+.+++++ +|+|||+|+... .+....+++|+.++.
T Consensus 45 -----------------~~~~~~~~~~~Dl~d~~------~~~~~~~~~~~~d~vih~a~~~~--~~~~~~~~~n~~~~~ 99 (364)
T 2v6g_A 45 -----------------HEDNPINYVQCDISDPD------DSQAKLSPLTDVTHVFYVTWANR--STEQENCEANSKMFR 99 (364)
T ss_dssp -----------------CCSSCCEEEECCTTSHH------HHHHHHTTCTTCCEEEECCCCCC--SSHHHHHHHHHHHHH
T ss_pred -----------------cccCceEEEEeecCCHH------HHHHHHhcCCCCCEEEECCCCCc--chHHHHHHHhHHHHH
Confidence 01246889999999876 78888887 999999999764 356778899999999
Q ss_pred HHHHHHHhcC-CCcEEE-------EeeCcceecCc----cccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCC
Q psy17528 203 TILALAKRMK-GLKSFV-------HVSTAYCNCDR----KFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKP 270 (366)
Q Consensus 203 ~ll~~a~~~~-~~~~~v-------~iSS~~~~~~~----~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (366)
++++++.+.. ++++|| |+||.++|+.. .++.|+....| ..
T Consensus 100 ~l~~a~~~~~~~~~~~v~~~g~~i~~Ss~~vyg~~~~~~~~~~E~~~~~~----------------------------~~ 151 (364)
T 2v6g_A 100 NVLDAVIPNCPNLKHISLQTGRKHYMGPFESYGKIESHDPPYTEDLPRLK----------------------------YM 151 (364)
T ss_dssp HHHHHHTTTCTTCCEEEEECCTHHHHCCGGGTTTSCCCCSSBCTTSCCCS----------------------------SC
T ss_pred HHHHHHHHhccccceEEeccCceEEEechhhccccccCCCCCCccccCCc----------------------------cc
Confidence 9999998752 688997 79999888653 24445432222 12
Q ss_pred chHHHHHHHHHHHHHHhc--CC-CCEEEEecCccccCCCCCCCccccccchHHHHHHHHh---cCcceeecCCC---Ccc
Q psy17528 271 NSYTLTKATAEDLVRQVG--HE-LPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAG---TGLIRVVQTDP---NIS 341 (366)
Q Consensus 271 ~~Y~~sK~~~E~~l~~~~--~g-l~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~l~~~~---~~~ 341 (366)
+.| +.+|+++.++. .+ ++++++||++|||++....... ....++.... .|.+..+++++ ...
T Consensus 152 ~~y----~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~ 222 (364)
T 2v6g_A 152 NFY----YDLEDIMLEEVEKKEGLTWSVHRPGNIFGFSPYSMMNL-----VGTLCVYAAICKHEGKVLRFTGCKAAWDGY 222 (364)
T ss_dssp CHH----HHHHHHHHHHHTTSTTCEEEEEEESSEECCCTTCSSCH-----HHHHHHHHHHHHHHTCCBCCCSCHHHHHSC
T ss_pred hhh----HHHHHHHHHHhhcCCCceEEEECCCceeCCCCCcccch-----HHHHHHHHHHHHhcCCceecCCCccccccc
Confidence 567 45888888765 45 9999999999999987532110 0122222222 56665666666 355
Q ss_pred cCcccHHHHHHHHHHHHHhhhh
Q psy17528 342 MDVVPGDRVINAMAALAWYFLF 363 (366)
Q Consensus 342 ~~~v~vdDva~ai~~~~~~~~~ 363 (366)
.++++++|+|++++.+++++..
T Consensus 223 ~~~~~v~Dva~a~~~~~~~~~~ 244 (364)
T 2v6g_A 223 SDCSDADLIAEHHIWAAVDPYA 244 (364)
T ss_dssp BCCEEHHHHHHHHHHHHHCGGG
T ss_pred CCCCcHHHHHHHHHHHHhCCCC
Confidence 7888999999999999987643
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.7e-24 Score=192.14 Aligned_cols=201 Identities=10% Similarity=-0.011 Sum_probs=145.1
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
|+|||||||||||++++++|++.| ++|++++|+... +...
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g---~~V~~~~R~~~~------~~~~------------------------------- 40 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRG---HEVLAVVRDPQK------AADR------------------------------- 40 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHH------HHHH-------------------------------
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCC---CEEEEEEecccc------cccc-------------------------------
Confidence 479999999999999999999998 899999997431 1110
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALA 208 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll~~a 208 (366)
...++.++.+|+.+.+ . ..+.++|+|||+||...... ....|+.++.++++++
T Consensus 41 ---------------~~~~~~~~~~D~~d~~------~--~~~~~~d~vi~~ag~~~~~~----~~~~n~~~~~~l~~a~ 93 (224)
T 3h2s_A 41 ---------------LGATVATLVKEPLVLT------E--ADLDSVDAVVDALSVPWGSG----RGYLHLDFATHLVSLL 93 (224)
T ss_dssp ---------------TCTTSEEEECCGGGCC------H--HHHTTCSEEEECCCCCTTSS----CTHHHHHHHHHHHHTC
T ss_pred ---------------cCCCceEEeccccccc------H--hhcccCCEEEECCccCCCcc----hhhHHHHHHHHHHHHH
Confidence 1247889999999987 4 67789999999999752111 2466999999999999
Q ss_pred HhcCCCcEEEEeeCcceecCcc-----ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHH
Q psy17528 209 KRMKGLKSFVHVSTAYCNCDRK-----FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDL 283 (366)
Q Consensus 209 ~~~~~~~~~v~iSS~~~~~~~~-----~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~ 283 (366)
++. + ++||++||..++.... +.+|...+.| .+.|+.+|...|.+
T Consensus 94 ~~~-~-~~~v~~SS~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~y~~sK~~~e~~ 142 (224)
T 3h2s_A 94 RNS-D-TLAVFILGSASLAMPGADHPMILDFPESAAS-----------------------------QPWYDGALYQYYEY 142 (224)
T ss_dssp TTC-C-CEEEEECCGGGSBCTTCSSCGGGGCCGGGGG-----------------------------STTHHHHHHHHHHH
T ss_pred HHc-C-CcEEEEecceeeccCCCCccccccCCCCCcc-----------------------------chhhHHHHHHHHHH
Confidence 987 5 8999999985543211 1222222111 27899999999965
Q ss_pred HHHhc-CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 284 VRQVG-HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 284 l~~~~-~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
..... .+++++++||+.+||++... ++.. .... +. .+....++++++|+|++++.+++++.
T Consensus 143 ~~~~~~~~i~~~ivrp~~v~g~~~~~--~~~~-------------~~~~--~~-~~~~~~~~i~~~DvA~~~~~~l~~~~ 204 (224)
T 3h2s_A 143 QFLQMNANVNWIGISPSEAFPSGPAT--SYVA-------------GKDT--LL-VGEDGQSHITTGNMALAILDQLEHPT 204 (224)
T ss_dssp HHHTTCTTSCEEEEEECSBCCCCCCC--CEEE-------------ESSB--CC-CCTTSCCBCCHHHHHHHHHHHHHSCC
T ss_pred HHHHhcCCCcEEEEcCccccCCCccc--Ccee-------------cccc--cc-cCCCCCceEeHHHHHHHHHHHhcCcc
Confidence 33222 78999999999999984421 1110 1111 11 13445789999999999999999886
Q ss_pred hcC
Q psy17528 363 FSC 365 (366)
Q Consensus 363 ~~~ 365 (366)
..|
T Consensus 205 ~~g 207 (224)
T 3h2s_A 205 AIR 207 (224)
T ss_dssp CTT
T ss_pred ccC
Confidence 544
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-23 Score=198.78 Aligned_cols=202 Identities=13% Similarity=0.084 Sum_probs=145.5
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
|+|||||||||||++|+++|+++| ++|++++|++...
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G---~~V~~l~R~~~~~---------------------------------------- 37 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARG---HEVTLVSRKPGPG---------------------------------------- 37 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSCCTT----------------------------------------
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC---CEEEEEECCCCcC----------------------------------------
Confidence 689999999999999999999999 8999999975321
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCccc--C----h-hhhHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATV--R----F-DEHIRTAYNINVKGT 201 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~--~----~-~~~~~~~~~~nv~~~ 201 (366)
. +..| . .....++++|.|||+|+.. . + .......++.|+.++
T Consensus 38 ------------------~---~~~~----~------~~~~~l~~~d~vihla~~~i~~~~~~~~~~~~~~~~~~~v~~t 86 (298)
T 4b4o_A 38 ------------------R---ITWD----E------LAASGLPSCDAAVNLAGENILNPLRRWNETFQKEVLGSRLETT 86 (298)
T ss_dssp ------------------E---EEHH----H------HHHHCCCSCSEEEECCCCCSSCTTSCCCHHHHHHHHHHHHHHH
T ss_pred ------------------e---eecc----h------hhHhhccCCCEEEEeccCcccchhhhhhhhhhhhhhhHHHHHH
Confidence 1 1111 1 1223456899999999852 1 1 233456888999999
Q ss_pred HHHHHHHHhcC-CCcEEEEeeCcceecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHH
Q psy17528 202 QTILALAKRMK-GLKSFVHVSTAYCNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKA 278 (366)
Q Consensus 202 ~~ll~~a~~~~-~~~~~v~iSS~~~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~ 278 (366)
.++++++...+ ..+.||+.||+++|+... +..|+..+.|. +.|+..|.
T Consensus 87 ~~l~~~~~~~~~~~~~~i~~Ss~~vyg~~~~~~~~E~~p~~~~-----------------------------~~~~~~~~ 137 (298)
T 4b4o_A 87 QLLAKAITKAPQPPKAWVLVTGVAYYQPSLTAEYDEDSPGGDF-----------------------------DFFSNLVT 137 (298)
T ss_dssp HHHHHHHHHCSSCCSEEEEEEEGGGSCCCSSCCBCTTCCCSCS-----------------------------SHHHHHHH
T ss_pred HHHHHHHHHhCCCceEEEEEeeeeeecCCCCCcccccCCcccc-----------------------------chhHHHHH
Confidence 99999988762 345689999999887543 45555443332 66777777
Q ss_pred HHHHHHHHhcCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHH
Q psy17528 279 TAEDLVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALA 358 (366)
Q Consensus 279 ~~E~~l~~~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~ 358 (366)
..|........+++++++||+.||||+.. + ...++.....+... ..+++++.++|||++|+|++++.++
T Consensus 138 ~~e~~~~~~~~~~~~~~~r~~~v~g~~~~----~------~~~~~~~~~~~~~~-~~g~g~~~~~~ihv~Dva~a~~~~~ 206 (298)
T 4b4o_A 138 KWEAAARLPGDSTRQVVVRSGVVLGRGGG----A------MGHMLLPFRLGLGG-PIGSGHQFFPWIHIGDLAGILTHAL 206 (298)
T ss_dssp HHHHHHCCSSSSSEEEEEEECEEECTTSH----H------HHHHHHHHHTTCCC-CBTTSCSBCCEEEHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCceeeeeeeeEEcCCCC----c------hhHHHHHHhcCCcc-eecccCceeecCcHHHHHHHHHHHH
Confidence 77765443337899999999999998642 1 12233333344433 4578899999999999999999999
Q ss_pred Hhhhhc
Q psy17528 359 WYFLFS 364 (366)
Q Consensus 359 ~~~~~~ 364 (366)
+++...
T Consensus 207 ~~~~~~ 212 (298)
T 4b4o_A 207 EANHVH 212 (298)
T ss_dssp HCTTCC
T ss_pred hCCCCC
Confidence 887644
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-23 Score=215.76 Aligned_cols=204 Identities=16% Similarity=0.114 Sum_probs=152.5
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+|+|||||||||||++|+++|++.| ++|++++|+....
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G---~~V~~l~R~~~~~--------------------------------------- 184 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGG---HEVIQLVRKEPKP--------------------------------------- 184 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESSSCCT---------------------------------------
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEECCCCCc---------------------------------------
Confidence 7899999999999999999999998 8999999986421
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh----hhhHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF----DEHIRTAYNINVKGTQT 203 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~----~~~~~~~~~~nv~~~~~ 203 (366)
..+.+|+.+.. ...+.++|+|||+|+.... ......++++|+.++.+
T Consensus 185 ---------------------~~v~~d~~~~~--------~~~l~~~D~Vih~A~~~~~~~~~~~~~~~~~~~Nv~gt~~ 235 (516)
T 3oh8_A 185 ---------------------GKRFWDPLNPA--------SDLLDGADVLVHLAGEPIFGRFNDSHKEAIRESRVLPTKF 235 (516)
T ss_dssp ---------------------TCEECCTTSCC--------TTTTTTCSEEEECCCC-----CCGGGHHHHHHHTHHHHHH
T ss_pred ---------------------cceeecccchh--------HHhcCCCCEEEECCCCccccccchhHHHHHHHHHHHHHHH
Confidence 11456766432 3455789999999997532 34567789999999999
Q ss_pred HHHHHHhcCCCcEEEEeeCcceec-Cc--cccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHH
Q psy17528 204 ILALAKRMKGLKSFVHVSTAYCNC-DR--KFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATA 280 (366)
Q Consensus 204 ll~~a~~~~~~~~~v~iSS~~~~~-~~--~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~ 280 (366)
+++++....++++|||+||+++|+ .. .++.|+... | .+.|+.+|...
T Consensus 236 ll~a~a~~~~~~r~V~~SS~~vyg~~~~~~~~~E~~~~-~-----------------------------~~~y~~~~~~~ 285 (516)
T 3oh8_A 236 LAELVAESTQCTTMISASAVGFYGHDRGDEILTEESES-G-----------------------------DDFLAEVCRDW 285 (516)
T ss_dssp HHHHHHHCSSCCEEEEEEEGGGGCSEEEEEEECTTSCC-C-----------------------------SSHHHHHHHHH
T ss_pred HHHHHHhcCCCCEEEEeCcceEecCCCCCCccCCCCCC-C-----------------------------cChHHHHHHHH
Confidence 999854445889999999999887 22 245555433 2 27899999999
Q ss_pred HHHHHHhc-CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHH
Q psy17528 281 EDLVRQVG-HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAW 359 (366)
Q Consensus 281 E~~l~~~~-~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~ 359 (366)
|.++.... .+++++++||++|||++.. + ...++.....+.. ...++++..++|+|++|+|++++.+++
T Consensus 286 E~~~~~~~~~gi~~~ilRp~~v~Gp~~~----~------~~~~~~~~~~g~~-~~~g~g~~~~~~i~v~Dva~ai~~~l~ 354 (516)
T 3oh8_A 286 EHATAPASDAGKRVAFIRTGVALSGRGG----M------LPLLKTLFSTGLG-GKFGDGTSWFSWIAIDDLTDIYYRAIV 354 (516)
T ss_dssp HHTTHHHHHTTCEEEEEEECEEEBTTBS----H------HHHHHHTTC---C-CCCTTSCCEECEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEEeeEEECCCCC----h------HHHHHHHHHhCCC-cccCCCCceEceEeHHHHHHHHHHHHh
Confidence 98876655 7999999999999998742 1 1222222233333 356778899999999999999999998
Q ss_pred hhhh
Q psy17528 360 YFLF 363 (366)
Q Consensus 360 ~~~~ 363 (366)
++..
T Consensus 355 ~~~~ 358 (516)
T 3oh8_A 355 DAQI 358 (516)
T ss_dssp CTTC
T ss_pred Cccc
Confidence 7653
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-23 Score=188.68 Aligned_cols=200 Identities=14% Similarity=0.062 Sum_probs=135.0
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
|+|||||||||||++++++|++.| ++|++++|+.+.. ..
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g---~~V~~~~R~~~~~------~~-------------------------------- 39 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRG---HEVTAIVRNAGKI------TQ-------------------------------- 39 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCSHHH------HH--------------------------------
T ss_pred CeEEEEcCCchhHHHHHHHHHhCC---CEEEEEEcCchhh------hh--------------------------------
Confidence 579999999999999999999998 8999999975311 00
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALA 208 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll~~a 208 (366)
. ..++.++.+|+.+.+ . +.+.++|+|||+||.... ....|+.+++++++++
T Consensus 40 ------------~---~~~~~~~~~D~~d~~------~--~~~~~~d~vi~~ag~~~~------~~~~~~~~~~~l~~a~ 90 (221)
T 3ew7_A 40 ------------T---HKDINILQKDIFDLT------L--SDLSDQNVVVDAYGISPD------EAEKHVTSLDHLISVL 90 (221)
T ss_dssp ------------H---CSSSEEEECCGGGCC------H--HHHTTCSEEEECCCSSTT------TTTSHHHHHHHHHHHH
T ss_pred ------------c---cCCCeEEeccccChh------h--hhhcCCCEEEECCcCCcc------ccchHHHHHHHHHHHH
Confidence 0 146789999999987 4 677899999999997432 2456899999999999
Q ss_pred HhcCCCcEEEEeeCcceecCcc---ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHH--
Q psy17528 209 KRMKGLKSFVHVSTAYCNCDRK---FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDL-- 283 (366)
Q Consensus 209 ~~~~~~~~~v~iSS~~~~~~~~---~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~-- 283 (366)
++. +.+++|++||..++.... +..|..... ..+.|+.+|...|.+
T Consensus 91 ~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~y~~~k~~~e~~~~ 140 (221)
T 3ew7_A 91 NGT-VSPRLLVVGGAASLQIDEDGNTLLESKGLR-----------------------------EAPYYPTARAQAKQLEH 140 (221)
T ss_dssp CSC-CSSEEEEECCCC------------------------------------------------CCCSCCHHHHHHHHHH
T ss_pred Hhc-CCceEEEEecceEEEcCCCCccccccCCCC-----------------------------CHHHHHHHHHHHHHHHH
Confidence 986 688999999986653321 111211111 126799999999987
Q ss_pred HHHhcCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhhhh
Q psy17528 284 VRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYFLF 363 (366)
Q Consensus 284 l~~~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~~ 363 (366)
+.+...+++++++||+.+||+... .+. + ...+....+.+++ ..+++++|+|++++.+++++..
T Consensus 141 ~~~~~~gi~~~ivrp~~v~g~~~~--~~~---~---------~~~~~~~~~~~~~---~~~i~~~Dva~~~~~~l~~~~~ 203 (221)
T 3ew7_A 141 LKSHQAEFSWTYISPSAMFEPGER--TGD---Y---------QIGKDHLLFGSDG---NSFISMEDYAIAVLDEIERPNH 203 (221)
T ss_dssp HHTTTTTSCEEEEECSSCCCCC--------------------------------------CCCHHHHHHHHHHHHHSCSC
T ss_pred HHhhccCccEEEEeCcceecCCCc--cCc---e---------EeccccceecCCC---CceEeHHHHHHHHHHHHhCccc
Confidence 332135899999999999998331 110 0 0111222222222 3699999999999999998876
Q ss_pred cC
Q psy17528 364 SC 365 (366)
Q Consensus 364 ~~ 365 (366)
.|
T Consensus 204 ~g 205 (221)
T 3ew7_A 204 LN 205 (221)
T ss_dssp TT
T ss_pred cC
Confidence 54
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-22 Score=187.17 Aligned_cols=194 Identities=22% Similarity=0.199 Sum_probs=150.6
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
|+|||||||||||++++++|++ | ++|++++|+...
T Consensus 1 m~ilVtGatG~iG~~l~~~L~~-g---~~V~~~~r~~~~----------------------------------------- 35 (273)
T 2ggs_A 1 MRTLITGASGQLGIELSRLLSE-R---HEVIKVYNSSEI----------------------------------------- 35 (273)
T ss_dssp CCEEEETTTSHHHHHHHHHHTT-T---SCEEEEESSSCC-----------------------------------------
T ss_pred CEEEEECCCChhHHHHHHHHhc-C---CeEEEecCCCcC-----------------------------------------
Confidence 4799999999999999999995 6 789999997521
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhC--cCEEEEcCcccChh---hhHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQ--TTIIFHIAATVRFD---EHIRTAYNINVKGTQT 203 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~--~d~Vih~a~~~~~~---~~~~~~~~~nv~~~~~ 203 (366)
. .+ +.+|+.+.+ .+..++++ +|+|||+||..... .++...+++|+.++.+
T Consensus 36 ------------~----~~---~~~Dl~~~~------~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~ 90 (273)
T 2ggs_A 36 ------------Q----GG---YKLDLTDFP------RLEDFIIKKRPDVIINAAAMTDVDKCEIEKEKAYKINAEAVRH 90 (273)
T ss_dssp ------------T----TC---EECCTTSHH------HHHHHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHH
T ss_pred ------------C----CC---ceeccCCHH------HHHHHHHhcCCCEEEECCcccChhhhhhCHHHHHHHhHHHHHH
Confidence 1 12 789999876 78888875 99999999976543 4667889999999999
Q ss_pred HHHHHHhcCCCcEEEEeeCcceecCcc-ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHH
Q psy17528 204 ILALAKRMKGLKSFVHVSTAYCNCDRK-FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAED 282 (366)
Q Consensus 204 ll~~a~~~~~~~~~v~iSS~~~~~~~~-~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~ 282 (366)
+++++.+. +. +||++||..+++... ++.|+..+.|. +.|+.+|...|.
T Consensus 91 l~~~~~~~-~~-~iv~~SS~~~~~~~~~~~~e~~~~~~~-----------------------------~~Y~~sK~~~e~ 139 (273)
T 2ggs_A 91 IVRAGKVI-DS-YIVHISTDYVFDGEKGNYKEEDIPNPI-----------------------------NYYGLSKLLGET 139 (273)
T ss_dssp HHHHHHHT-TC-EEEEEEEGGGSCSSSCSBCTTSCCCCS-----------------------------SHHHHHHHHHHH
T ss_pred HHHHHHHh-CC-eEEEEecceeEcCCCCCcCCCCCCCCC-----------------------------CHHHHHHHHHHH
Confidence 99999886 44 999999998886432 45555433332 789999999999
Q ss_pred HHHHhcCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhh
Q psy17528 283 LVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 283 ~l~~~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
+++. ++++++||+.|||+. .+ ...++.....+....+.++ .+++++++|+|++++.+++.+
T Consensus 140 ~~~~----~~~~~iR~~~v~G~~-----~~------~~~~~~~~~~~~~~~~~~~---~~~~~~~~dva~~i~~~~~~~ 200 (273)
T 2ggs_A 140 FALQ----DDSLIIRTSGIFRNK-----GF------PIYVYKTLKEGKTVFAFKG---YYSPISARKLASAILELLELR 200 (273)
T ss_dssp HHCC----TTCEEEEECCCBSSS-----SH------HHHHHHHHHTTCCEEEESC---EECCCBHHHHHHHHHHHHHHT
T ss_pred HHhC----CCeEEEecccccccc-----HH------HHHHHHHHHcCCCEEeecC---CCCceEHHHHHHHHHHHHhcC
Confidence 9976 678999999999821 11 1233344556665555533 789999999999999998765
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=99.90 E-value=5.4e-23 Score=193.00 Aligned_cols=187 Identities=18% Similarity=0.221 Sum_probs=144.6
Q ss_pred CeEEEeCCcchHHHHHHHHHHHh--CCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRC--CPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~--g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
|+|||||||||||++++++|++. | ++|++++|+..... .+.
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g---~~V~~~~r~~~~~~---~l~------------------------------- 43 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPA---SQIIAIVRNVEKAS---TLA------------------------------- 43 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCG---GGEEEEESCTTTTH---HHH-------------------------------
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCC---CeEEEEEcCHHHHh---HHh-------------------------------
Confidence 57999999999999999999998 7 88999999754311 110
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILA 206 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll~ 206 (366)
..++.++.+|+.|.+ .+.++++++|+|||+|+... . . ++|+.++.++++
T Consensus 44 ------------------~~~~~~~~~D~~d~~------~l~~~~~~~d~vi~~a~~~~-~---~---~~n~~~~~~l~~ 92 (287)
T 2jl1_A 44 ------------------DQGVEVRHGDYNQPE------SLQKAFAGVSKLLFISGPHY-D---N---TLLIVQHANVVK 92 (287)
T ss_dssp ------------------HTTCEEEECCTTCHH------HHHHHTTTCSEEEECCCCCS-C---H---HHHHHHHHHHHH
T ss_pred ------------------hcCCeEEEeccCCHH------HHHHHHhcCCEEEEcCCCCc-C---c---hHHHHHHHHHHH
Confidence 135788999999977 78899999999999999631 1 1 568999999999
Q ss_pred HHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHH
Q psy17528 207 LAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQ 286 (366)
Q Consensus 207 ~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~ 286 (366)
++++. ++++||++||.+++.. +..|+.+|..+|+++++
T Consensus 93 a~~~~-~~~~~v~~Ss~~~~~~-----------------------------------------~~~y~~~K~~~E~~~~~ 130 (287)
T 2jl1_A 93 AARDA-GVKHIAYTGYAFAEES-----------------------------------------IIPLAHVHLATEYAIRT 130 (287)
T ss_dssp HHHHT-TCSEEEEEEETTGGGC-----------------------------------------CSTHHHHHHHHHHHHHH
T ss_pred HHHHc-CCCEEEEECCCCCCCC-----------------------------------------CCchHHHHHHHHHHHHH
Confidence 99986 7899999999876410 15799999999999986
Q ss_pred hcCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHh-cCcceeecCCCCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 287 VGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAG-TGLIRVVQTDPNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 287 ~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
. +++++++||+.++|+... .+ +.... .+... ...++..++|+|++|+|++++.+++.+.
T Consensus 131 ~--~~~~~ilrp~~~~~~~~~---~~----------~~~~~~~~~~~--~~~~~~~~~~i~~~Dva~~~~~~~~~~~ 190 (287)
T 2jl1_A 131 T--NIPYTFLRNALYTDFFVN---EG----------LRASTESGAIV--TNAGSGIVNSVTRNELALAAATVLTEEG 190 (287)
T ss_dssp T--TCCEEEEEECCBHHHHSS---GG----------GHHHHHHTEEE--ESCTTCCBCCBCHHHHHHHHHHHHTSSS
T ss_pred c--CCCeEEEECCEeccccch---hh----------HHHHhhCCcee--ccCCCCccCccCHHHHHHHHHHHhcCCC
Confidence 4 799999999998875311 11 11112 23322 3356778999999999999999998753
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-22 Score=196.40 Aligned_cols=204 Identities=14% Similarity=0.098 Sum_probs=149.2
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHH-HHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSIT-QRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
|++++|||||||||||+++++.|++.| ++|++++|+.+..... +.+.. +.
T Consensus 8 M~~~~IlVtGatG~iG~~l~~~L~~~g---~~V~~l~R~~~~~~~~~~~~~~---------l~----------------- 58 (346)
T 3i6i_A 8 SPKGRVLIAGATGFIGQFVATASLDAH---RPTYILARPGPRSPSKAKIFKA---------LE----------------- 58 (346)
T ss_dssp ---CCEEEECTTSHHHHHHHHHHHHTT---CCEEEEECSSCCCHHHHHHHHH---------HH-----------------
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCC---CCEEEEECCCCCChhHHHHHHH---------HH-----------------
Confidence 556799999999999999999999998 7899999986432111 11111 10
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccChhhhHHHHHHHHHHHHH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRFDEHIRTAYNINVKGTQ 202 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~ 202 (366)
..++.++.+|+.|.+ .+..+++ ++|+|||+++.. |+.++.
T Consensus 59 --------------------~~~v~~~~~Dl~d~~------~l~~~~~~~~~d~Vi~~a~~~------------n~~~~~ 100 (346)
T 3i6i_A 59 --------------------DKGAIIVYGLINEQE------AMEKILKEHEIDIVVSTVGGE------------SILDQI 100 (346)
T ss_dssp --------------------HTTCEEEECCTTCHH------HHHHHHHHTTCCEEEECCCGG------------GGGGHH
T ss_pred --------------------hCCcEEEEeecCCHH------HHHHHHhhCCCCEEEECCchh------------hHHHHH
Confidence 157889999999977 8899999 999999999962 788889
Q ss_pred HHHHHHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHH
Q psy17528 203 TILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAED 282 (366)
Q Consensus 203 ~ll~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~ 282 (366)
++++++++.+.+++||+ |+ + +. ..+|.....|. +.|+.+|..+|+
T Consensus 101 ~l~~aa~~~g~v~~~v~-S~-~--g~--~~~e~~~~~p~-----------------------------~~y~~sK~~~e~ 145 (346)
T 3i6i_A 101 ALVKAMKAVGTIKRFLP-SE-F--GH--DVNRADPVEPG-----------------------------LNMYREKRRVRQ 145 (346)
T ss_dssp HHHHHHHHHCCCSEEEC-SC-C--SS--CTTTCCCCTTH-----------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCceEEee-cc-c--CC--CCCccCcCCCc-----------------------------chHHHHHHHHHH
Confidence 99999998833899886 42 2 21 12222222221 789999999999
Q ss_pred HHHHhcCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 283 LVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 283 ~l~~~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
++++. +++++++||+.++|........ .......+....++++++..++|++++|+|++++.++..+.
T Consensus 146 ~l~~~--g~~~tivrpg~~~g~~~~~~~~----------~~~~~~~~~~~~~~g~g~~~~~~i~~~Dva~~~~~~l~~~~ 213 (346)
T 3i6i_A 146 LVEES--GIPFTYICCNSIASWPYYNNIH----------PSEVLPPTDFFQIYGDGNVKAYFVAGTDIGKFTMKTVDDVR 213 (346)
T ss_dssp HHHHT--TCCBEEEECCEESSCCCSCC---------------CCCCSSCEEEETTSCCCEEEECHHHHHHHHHHHTTCGG
T ss_pred HHHHc--CCCEEEEEecccccccCccccc----------cccccCCCceEEEccCCCceEEecCHHHHHHHHHHHHhCcc
Confidence 99885 7999999999999964321111 11111244456677888999999999999999999998875
Q ss_pred h
Q psy17528 363 F 363 (366)
Q Consensus 363 ~ 363 (366)
.
T Consensus 214 ~ 214 (346)
T 3i6i_A 214 T 214 (346)
T ss_dssp G
T ss_pred c
Confidence 3
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-22 Score=180.16 Aligned_cols=195 Identities=15% Similarity=0.168 Sum_probs=144.6
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
++|+|+||||||+||++++++|++.| ++|++++|+.....
T Consensus 2 ~~~~ilVtGatG~iG~~l~~~l~~~g---~~V~~~~r~~~~~~------------------------------------- 41 (206)
T 1hdo_A 2 AVKKIAIFGATGQTGLTTLAQAVQAG---YEVTVLVRDSSRLP------------------------------------- 41 (206)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCGGGSC-------------------------------------
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCC---CeEEEEEeChhhcc-------------------------------------
Confidence 34799999999999999999999998 89999999753210
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILA 206 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll~ 206 (366)
.....++.++.+|+.+.+ .+.++++++|+|||+++..... . ..++|+.++.++++
T Consensus 42 ---------------~~~~~~~~~~~~D~~~~~------~~~~~~~~~d~vi~~a~~~~~~-~---~~~~n~~~~~~~~~ 96 (206)
T 1hdo_A 42 ---------------SEGPRPAHVVVGDVLQAA------DVDKTVAGQDAVIVLLGTRNDL-S---PTTVMSEGARNIVA 96 (206)
T ss_dssp ---------------SSSCCCSEEEESCTTSHH------HHHHHHTTCSEEEECCCCTTCC-S---CCCHHHHHHHHHHH
T ss_pred ---------------cccCCceEEEEecCCCHH------HHHHHHcCCCEEEECccCCCCC-C---ccchHHHHHHHHHH
Confidence 001357889999999877 7889999999999999975431 1 12478999999999
Q ss_pred HHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHH
Q psy17528 207 LAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQ 286 (366)
Q Consensus 207 ~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~ 286 (366)
++.+. ++++||++||..+++..... +.+ ...|+.+|...|.++++
T Consensus 97 ~~~~~-~~~~~v~~Ss~~~~~~~~~~-----~~~-----------------------------~~~y~~~K~~~e~~~~~ 141 (206)
T 1hdo_A 97 AMKAH-GVDKVVACTSAFLLWDPTKV-----PPR-----------------------------LQAVTDDHIRMHKVLRE 141 (206)
T ss_dssp HHHHH-TCCEEEEECCGGGTSCTTCS-----CGG-----------------------------GHHHHHHHHHHHHHHHH
T ss_pred HHHHh-CCCeEEEEeeeeeccCcccc-----ccc-----------------------------chhHHHHHHHHHHHHHh
Confidence 99886 78899999999877543210 001 17899999999999976
Q ss_pred hcCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhhhhcC
Q psy17528 287 VGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYFLFSC 365 (366)
Q Consensus 287 ~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~~~~ 365 (366)
. +++++++||+.+ ++.... ..+.. .+...+. .++++++|+|++++.+++++...|
T Consensus 142 ~--~i~~~~lrp~~~-~~~~~~-~~~~~------------------~~~~~~~--~~~i~~~Dva~~~~~~~~~~~~~g 196 (206)
T 1hdo_A 142 S--GLKYVAVMPPHI-GDQPLT-GAYTV------------------TLDGRGP--SRVISKHDLGHFMLRCLTTDEYDG 196 (206)
T ss_dssp T--CSEEEEECCSEE-ECCCCC-SCCEE------------------ESSSCSS--CSEEEHHHHHHHHHHTTSCSTTTT
T ss_pred C--CCCEEEEeCCcc-cCCCCC-cceEe------------------cccCCCC--CCccCHHHHHHHHHHHhcCccccc
Confidence 4 799999999997 332211 11110 0011111 489999999999999998765443
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-23 Score=203.55 Aligned_cols=185 Identities=21% Similarity=0.198 Sum_probs=148.9
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCcc-EEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIR-KIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~-~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
|+|||||||||||++|+++|++.| + +|++++|+
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g---~~~v~~~d~~------------------------------------------- 34 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTT---DHHIFEVHRQ------------------------------------------- 34 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHC---CCEEEECCTT-------------------------------------------
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC---CCEEEEECCC-------------------------------------------
Confidence 589999999999999999999998 5 67666652
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILAL 207 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll~~ 207 (366)
.+.+ .+..+++++|+|||+|+.... ......+++|+.++.+++++
T Consensus 35 ----------------------------~d~~------~l~~~~~~~d~Vih~a~~~~~-~~~~~~~~~n~~~~~~l~~a 79 (369)
T 3st7_A 35 ----------------------------TKEE------ELESALLKADFIVHLAGVNRP-EHDKEFSLGNVSYLDHVLDI 79 (369)
T ss_dssp ----------------------------CCHH------HHHHHHHHCSEEEECCCSBCT-TCSTTCSSSCCBHHHHHHHH
T ss_pred ----------------------------CCHH------HHHHHhccCCEEEECCcCCCC-CCHHHHHHHHHHHHHHHHHH
Confidence 2222 677888899999999997653 34455678899999999999
Q ss_pred HHhcCCCc-EEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHH
Q psy17528 208 AKRMKGLK-SFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQ 286 (366)
Q Consensus 208 a~~~~~~~-~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~ 286 (366)
+++. +++ +|||+||.++++ .+.|+.+|..+|+++++
T Consensus 80 ~~~~-~~~~~~v~~Ss~~~~~------------------------------------------~~~Y~~sK~~~E~~~~~ 116 (369)
T 3st7_A 80 LTRN-TKKPAILLSSSIQATQ------------------------------------------DNPYGESKLQGEQLLRE 116 (369)
T ss_dssp HTTC-SSCCEEEEEEEGGGGS------------------------------------------CSHHHHHHHHHHHHHHH
T ss_pred HHHh-CCCCeEEEeCchhhcC------------------------------------------CCCchHHHHHHHHHHHH
Confidence 9987 565 999999998764 17899999999999998
Q ss_pred hc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhhhh
Q psy17528 287 VG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYFLF 363 (366)
Q Consensus 287 ~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~~ 363 (366)
+. .+++++++||++|||++..+.. ...+..++.....+....+. +++..++++|++|+|++++.+++.+..
T Consensus 117 ~~~~~g~~~~i~R~~~v~G~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~v~Dva~~~~~~l~~~~~ 189 (369)
T 3st7_A 117 YAEEYGNTVYIYRWPNLFGKWCKPNY-----NSVIATFCYKIARNEEIQVN-DRNVELTLNYVDDIVAEIKRAIEGTPT 189 (369)
T ss_dssp HHHHHCCCEEEEEECEEECTTCCTTS-----SCHHHHHHHHHHTTCCCCCS-CTTCEEEEEEHHHHHHHHHHHHHTCCC
T ss_pred HHHHhCCCEEEEECCceeCCCCCCCc-----chHHHHHHHHHHcCCCeEec-CCCeEEEEEEHHHHHHHHHHHHhCCcc
Confidence 76 5899999999999999875421 01234556666677766554 778899999999999999999988754
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=4.9e-23 Score=185.04 Aligned_cols=191 Identities=17% Similarity=0.143 Sum_probs=146.7
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+|+|+||||+|+||++++++|++.|. .++|++++|+...
T Consensus 5 ~~~vlVtGatG~iG~~l~~~l~~~g~-~~~V~~~~r~~~~---------------------------------------- 43 (215)
T 2a35_A 5 PKRVLLAGATGLTGEHLLDRILSEPT-LAKVIAPARKALA---------------------------------------- 43 (215)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTT-CCEEECCBSSCCC----------------------------------------
T ss_pred CceEEEECCCcHHHHHHHHHHHhCCC-CCeEEEEeCCCcc----------------------------------------
Confidence 57999999999999999999999971 2399999997542
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh-hhhHHHHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF-DEHIRTAYNINVKGTQTILA 206 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~-~~~~~~~~~~nv~~~~~ll~ 206 (366)
...++.++.+|+.+.+ .+.+++ +|+|||+||.... .......+++|+.++.++++
T Consensus 44 ----------------~~~~~~~~~~D~~~~~------~~~~~~--~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~ 99 (215)
T 2a35_A 44 ----------------EHPRLDNPVGPLAELL------PQLDGS--IDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGK 99 (215)
T ss_dssp ----------------CCTTEECCBSCHHHHG------GGCCSC--CSEEEECCCCCHHHHSSHHHHHHHHTHHHHHHHH
T ss_pred ----------------cCCCceEEeccccCHH------HHHHhh--hcEEEECeeeccccCCCHHHHHHhhHHHHHHHHH
Confidence 1246778889998865 455555 9999999997542 34567788999999999999
Q ss_pred HHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHH
Q psy17528 207 LAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQ 286 (366)
Q Consensus 207 ~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~ 286 (366)
++.+. ++++||++||..+++.. .+.|+.+|...|++++.
T Consensus 100 ~~~~~-~~~~~v~~Ss~~~~~~~----------------------------------------~~~y~~sK~~~e~~~~~ 138 (215)
T 2a35_A 100 RALEM-GARHYLVVSALGADAKS----------------------------------------SIFYNRVKGELEQALQE 138 (215)
T ss_dssp HHHHT-TCCEEEEECCTTCCTTC----------------------------------------SSHHHHHHHHHHHHHTT
T ss_pred HHHHc-CCCEEEEECCcccCCCC----------------------------------------ccHHHHHHHHHHHHHHH
Confidence 99986 78899999998876321 17899999999999987
Q ss_pred hcCCCC-EEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 287 VGHELP-ICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 287 ~~~gl~-~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
. +++ ++++||+.+||+...+ .+... ..+...++ .+ ..+++++++|+|++++.+++.+.
T Consensus 139 ~--~~~~~~~vrp~~v~g~~~~~--~~~~~-----------~~~~~~~~-~~--~~~~~i~~~Dva~~~~~~~~~~~ 197 (215)
T 2a35_A 139 Q--GWPQLTIARPSLLFGPREEF--RLAEI-----------LAAPIARI-LP--GKYHGIEACDLARALWRLALEEG 197 (215)
T ss_dssp S--CCSEEEEEECCSEESTTSCE--EGGGG-----------TTCCCC-------CHHHHHHHHHHHHHHHHHHTCCC
T ss_pred c--CCCeEEEEeCceeeCCCCcc--hHHHH-----------HHHhhhhc-cC--CCcCcEeHHHHHHHHHHHHhcCC
Confidence 5 799 9999999999997641 11110 11111122 12 26799999999999999998753
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.8e-22 Score=183.70 Aligned_cols=202 Identities=15% Similarity=0.131 Sum_probs=146.9
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHh--CCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRC--CPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~--g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
+++++||||||+|+||++++++|++. | ++|++++|+... +.+
T Consensus 2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g---~~V~~~~r~~~~------~~~--------------------------- 45 (253)
T 1xq6_A 2 ANLPTVLVTGASGRTGQIVYKKLKEGSDK---FVAKGLVRSAQG------KEK--------------------------- 45 (253)
T ss_dssp CSCCEEEEESTTSHHHHHHHHHHHHTTTT---CEEEEEESCHHH------HHH---------------------------
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCCC---cEEEEEEcCCCc------hhh---------------------------
Confidence 35789999999999999999999999 6 899999997421 100
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh----------------
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD---------------- 187 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~---------------- 187 (366)
. ..++.++.+|+.+.+ .+.++++++|+|||+||.....
T Consensus 46 -----------------~---~~~~~~~~~D~~d~~------~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (253)
T 1xq6_A 46 -----------------I---GGEADVFIGDITDAD------SINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIF 99 (253)
T ss_dssp -----------------T---TCCTTEEECCTTSHH------HHHHHHTTCSEEEECCCCCCEECTTCCTTSSCCCCEEC
T ss_pred -----------------c---CCCeeEEEecCCCHH------HHHHHHcCCCEEEEeccccccccccccccccccchhhc
Confidence 0 135668899999876 8889999999999999965321
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 188 EHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 188 ~~~~~~~~~nv~~~~~ll~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
......+++|+.++.++++++.+. ++++||++||..++.... |..+. .
T Consensus 100 ~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~SS~~~~~~~~---------~~~~~-----------------~----- 147 (253)
T 1xq6_A 100 EDGQYPEQVDWIGQKNQIDAAKVA-GVKHIVVVGSMGGTNPDH---------PLNKL-----------------G----- 147 (253)
T ss_dssp CTTCSHHHHTTHHHHHHHHHHHHH-TCSEEEEEEETTTTCTTC---------GGGGG-----------------G-----
T ss_pred cccccceeeeHHHHHHHHHHHHHc-CCCEEEEEcCccCCCCCC---------ccccc-----------------c-----
Confidence 111246789999999999999887 788999999987642211 10000 0
Q ss_pred CCCchHHHHHHHHHHHHHHhcCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccH
Q psy17528 268 GKPNSYTLTKATAEDLVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPG 347 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~v 347 (366)
.+.|+.+|...|.+++. .+++++++||+.+||+...... +. .+....++. ....++++
T Consensus 148 --~~~y~~sK~~~e~~~~~--~~i~~~~vrpg~v~~~~~~~~~-~~--------------~~~~~~~~~---~~~~~~~~ 205 (253)
T 1xq6_A 148 --NGNILVWKRKAEQYLAD--SGTPYTIIRAGGLLDKEGGVRE-LL--------------VGKDDELLQ---TDTKTVPR 205 (253)
T ss_dssp --GCCHHHHHHHHHHHHHT--SSSCEEEEEECEEECSCSSSSC-EE--------------EESTTGGGG---SSCCEEEH
T ss_pred --chhHHHHHHHHHHHHHh--CCCceEEEecceeecCCcchhh-hh--------------ccCCcCCcC---CCCcEEcH
Confidence 04588899999999976 3899999999999998653211 10 011111121 13569999
Q ss_pred HHHHHHHHHHHHhhhh
Q psy17528 348 DRVINAMAALAWYFLF 363 (366)
Q Consensus 348 dDva~ai~~~~~~~~~ 363 (366)
+|+|++++.+++.+..
T Consensus 206 ~Dva~~~~~~~~~~~~ 221 (253)
T 1xq6_A 206 ADVAEVCIQALLFEEA 221 (253)
T ss_dssp HHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHcCccc
Confidence 9999999999987653
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.8e-22 Score=185.59 Aligned_cols=184 Identities=15% Similarity=0.151 Sum_probs=137.7
Q ss_pred eEEEeCCcchHHHHHHHHHHHh--CCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 50 TIFITGATGFLGSLLVEKLLRC--CPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 50 ~ilItGatG~IG~~lv~~Ll~~--g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+|||||||||||++++++|++. | ++|++++|+.+... .+.
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g---~~V~~~~r~~~~~~---~~~-------------------------------- 42 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPA---SQIVAIVRNPAKAQ---ALA-------------------------------- 42 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCG---GGEEEEESCTTTCH---HHH--------------------------------
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCC---ceEEEEEcChHhhh---hhh--------------------------------
Confidence 5899999999999999999998 7 88999999764321 000
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILAL 207 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll~~ 207 (366)
..++.++.+|+.+.+ .+..+++++|+|||+|+... ..|+.++.+++++
T Consensus 43 -----------------~~~~~~~~~D~~d~~------~~~~~~~~~d~vi~~a~~~~---------~~~~~~~~~l~~a 90 (286)
T 2zcu_A 43 -----------------AQGITVRQADYGDEA------ALTSALQGVEKLLLISSSEV---------GQRAPQHRNVINA 90 (286)
T ss_dssp -----------------HTTCEEEECCTTCHH------HHHHHTTTCSEEEECC-----------------CHHHHHHHH
T ss_pred -----------------cCCCeEEEcCCCCHH------HHHHHHhCCCEEEEeCCCCc---------hHHHHHHHHHHHH
Confidence 135788999999977 78899999999999998521 2478899999999
Q ss_pred HHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHHh
Q psy17528 208 AKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQV 287 (366)
Q Consensus 208 a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~ 287 (366)
+++. ++++||++||.+++. . +..|+.+|..+|+++++.
T Consensus 91 ~~~~-~~~~~v~~Ss~~~~~-----------~------------------------------~~~y~~sK~~~e~~~~~~ 128 (286)
T 2zcu_A 91 AKAA-GVKFIAYTSLLHADT-----------S------------------------------PLGLADEHIETEKMLADS 128 (286)
T ss_dssp HHHH-TCCEEEEEEETTTTT-----------C------------------------------CSTTHHHHHHHHHHHHHH
T ss_pred HHHc-CCCEEEEECCCCCCC-----------C------------------------------cchhHHHHHHHHHHHHHc
Confidence 9887 789999999987651 0 157999999999999874
Q ss_pred cCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 288 GHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 288 ~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
+++++++||+.++++... ++.....+.... ...++..+++++++|+|++++.++..+.
T Consensus 129 --~~~~~ilrp~~~~~~~~~--------------~~~~~~~~~~~~-~~~~~~~~~~i~~~Dva~~~~~~~~~~~ 186 (286)
T 2zcu_A 129 --GIVYTLLRNGWYSENYLA--------------SAPAALEHGVFI-GAAGDGKIASATRADYAAAAARVISEAG 186 (286)
T ss_dssp --CSEEEEEEECCBHHHHHT--------------THHHHHHHTEEE-ESCTTCCBCCBCHHHHHHHHHHHHHSSS
T ss_pred --CCCeEEEeChHHhhhhHH--------------HhHHhhcCCcee-ccCCCCccccccHHHHHHHHHHHhcCCC
Confidence 799999999876654210 112222222222 4456788999999999999999998754
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.9e-21 Score=180.24 Aligned_cols=191 Identities=10% Similarity=0.087 Sum_probs=139.8
Q ss_pred CeEEEeCCcchHHHHHHHHHHHh-CCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRC-CPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~-g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
|+|||||||||||++++++|++. | ++|++++|+.+...
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g---~~V~~~~R~~~~~~-------------------------------------- 39 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHI---DHFHIGVRNVEKVP-------------------------------------- 39 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTC---TTEEEEESSGGGSC--------------------------------------
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCC---CcEEEEECCHHHHH--------------------------------------
Confidence 47999999999999999999887 6 78999999864321
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILAL 207 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll~~ 207 (366)
.....+++++.+|+.|++ .+..+++++|+|||+|+..... ..|+.++.+++++
T Consensus 40 --------------~~~~~~v~~~~~D~~d~~------~l~~~~~~~d~vi~~a~~~~~~-------~~~~~~~~~l~~a 92 (289)
T 3e48_A 40 --------------DDWRGKVSVRQLDYFNQE------SMVEAFKGMDTVVFIPSIIHPS-------FKRIPEVENLVYA 92 (289)
T ss_dssp --------------GGGBTTBEEEECCTTCHH------HHHHHTTTCSEEEECCCCCCSH-------HHHHHHHHHHHHH
T ss_pred --------------HhhhCCCEEEEcCCCCHH------HHHHHHhCCCEEEEeCCCCccc-------hhhHHHHHHHHHH
Confidence 001257899999999987 8999999999999999975422 2378899999999
Q ss_pred HHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHHh
Q psy17528 208 AKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQV 287 (366)
Q Consensus 208 a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~ 287 (366)
+++. ++++||++||..... ..| ..+...+...|..+.+.
T Consensus 93 a~~~-gv~~iv~~Ss~~~~~----------~~~------------------------------~~~~~~~~~~e~~~~~~ 131 (289)
T 3e48_A 93 AKQS-GVAHIIFIGYYADQH----------NNP------------------------------FHMSPYFGYASRLLSTS 131 (289)
T ss_dssp HHHT-TCCEEEEEEESCCST----------TCC------------------------------STTHHHHHHHHHHHHHH
T ss_pred HHHc-CCCEEEEEcccCCCC----------CCC------------------------------CccchhHHHHHHHHHHc
Confidence 9987 789999999953210 001 11222234566666655
Q ss_pred cCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhhhhcC
Q psy17528 288 GHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYFLFSC 365 (366)
Q Consensus 288 ~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~~~~ 365 (366)
+++++++||+.+||+.. .++.....+. ......++..++|++++|+|++++.++..+...|
T Consensus 132 --g~~~~ilrp~~~~~~~~--------------~~~~~~~~~~-~~~~~~g~~~~~~i~~~Dva~~~~~~l~~~~~~g 192 (289)
T 3e48_A 132 --GIDYTYVRMAMYMDPLK--------------PYLPELMNMH-KLIYPAGDGRINYITRNDIARGVIAIIKNPDTWG 192 (289)
T ss_dssp --CCEEEEEEECEESTTHH--------------HHHHHHHHHT-EECCCCTTCEEEEECHHHHHHHHHHHHHCGGGTT
T ss_pred --CCCEEEEeccccccccH--------------HHHHHHHHCC-CEecCCCCceeeeEEHHHHHHHHHHHHcCCCcCC
Confidence 79999999999998621 1122222222 2234457888999999999999999998876433
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.86 E-value=3e-21 Score=177.50 Aligned_cols=219 Identities=16% Similarity=0.041 Sum_probs=145.0
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
||+||||||+|+||++++++|++.| ++|++++|+.+...
T Consensus 1 Mk~vlVtGasg~iG~~l~~~L~~~g---~~V~~~~r~~~~~~-------------------------------------- 39 (255)
T 2dkn_A 1 MSVIAITGSASGIGAALKELLARAG---HTVIGIDRGQADIE-------------------------------------- 39 (255)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSSSSEE--------------------------------------
T ss_pred CcEEEEeCCCcHHHHHHHHHHHhCC---CEEEEEeCChhHcc--------------------------------------
Confidence 3689999999999999999999998 88999999754210
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh----CcCEEEEcCcccChhhhHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS----QTTIIFHIAATVRFDEHIRTAYNINVKGTQT 203 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~----~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ 203 (366)
. .+.+|+.+.+ .+.++++ ++|+|||+||.......++..+++|+.++..
T Consensus 40 ------------------~---~~~~D~~~~~------~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~N~~~~~~ 92 (255)
T 2dkn_A 40 ------------------A---DLSTPGGRET------AVAAVLDRCGGVLDGLVCCAGVGVTAANSGLVVAVNYFGVSA 92 (255)
T ss_dssp ------------------C---CTTSHHHHHH------HHHHHHHHHTTCCSEEEECCCCCTTSSCHHHHHHHHTHHHHH
T ss_pred ------------------c---cccCCcccHH------HHHHHHHHcCCCccEEEECCCCCCcchhHHHHHHHHhHHHHH
Confidence 0 1567888765 6666665 8999999999765455678899999999999
Q ss_pred HHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHH
Q psy17528 204 ILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATA 280 (366)
Q Consensus 204 ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~ 280 (366)
+++++.+. .+.+++|++||..++...... .+. .+ .....+.+....... ........|+.+|...
T Consensus 93 l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~------~~~-~~----~~~~~~~~~~~~~~~-~~~~~~~~Y~~sK~a~ 160 (255)
T 2dkn_A 93 LLDGLAEALSRGQQPAAVIVGSIAATQPGAAE------LPM-VE----AMLAGDEARAIELAE-QQGQTHLAYAGSKYAV 160 (255)
T ss_dssp HHHHHHHHHHTSSSCEEEEECCGGGGSTTGGG------CHH-HH----HHHHTCHHHHHHHHH-HHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCCceEEEEeccccccccccc------cch-hh----hhcccchhhhhhhcc-ccCCcchhHHHHHHHH
Confidence 99977643 245799999999877533110 000 00 000001111000000 0001126899999999
Q ss_pred HHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHH
Q psy17528 281 EDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMA 355 (366)
Q Consensus 281 E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~ 355 (366)
|.+++.+. ++++++++||+.|+|+.... ++.....+....... + ...++++++|+|++++
T Consensus 161 ~~~~~~~~~~~~~~gi~v~~v~pg~v~~~~~~~-------------~~~~~~~~~~~~~~~-~-~~~~~~~~~dva~~~~ 225 (255)
T 2dkn_A 161 TCLARRNVVDWAGRGVRLNVVAPGAVETPLLQA-------------SKADPRYGESTRRFV-A-PLGRGSEPREVAEAIA 225 (255)
T ss_dssp HHHHHHTHHHHHHTTCEEEEEEECCBCSHHHHH-------------HHHCTTTHHHHHSCC-C-TTSSCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCcEEEEEcCCcccchhhhh-------------cccchhhHHHHHHHH-H-HhcCCCCHHHHHHHHH
Confidence 99998765 58999999999999874210 000000000000011 2 3457999999999999
Q ss_pred HHHHhh
Q psy17528 356 ALAWYF 361 (366)
Q Consensus 356 ~~~~~~ 361 (366)
.++..+
T Consensus 226 ~l~~~~ 231 (255)
T 2dkn_A 226 FLLGPQ 231 (255)
T ss_dssp HHHSGG
T ss_pred HHhCCC
Confidence 998765
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.1e-20 Score=174.06 Aligned_cols=213 Identities=14% Similarity=0.170 Sum_probs=145.2
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
++|+||||||+|+||++++++|++.| ++|++++|+.... +.+.+ .
T Consensus 4 ~~k~vlVTGas~gIG~~~a~~l~~~G---~~V~~~~r~~~~~---~~~~~------------~----------------- 48 (281)
T 3m1a_A 4 SAKVWLVTGASSGFGRAIAEAAVAAG---DTVIGTARRTEAL---DDLVA------------A----------------- 48 (281)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESSGGGG---HHHHH------------H-----------------
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHHHH---HHHHH------------h-----------------
Confidence 57899999999999999999999999 8999999975421 11111 0
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIRT 192 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~~ 192 (366)
...++.++.+|+++.+ .+..+++ ++|+||||||... ....++.
T Consensus 49 -----------------~~~~~~~~~~Dv~~~~------~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~ 105 (281)
T 3m1a_A 49 -----------------YPDRAEAISLDVTDGE------RIDVVAADVLARYGRVDVLVNNAGRTQVGAFEETTERELRD 105 (281)
T ss_dssp -----------------CTTTEEEEECCTTCHH------HHHHHHHHHHHHHSCCSEEEECCCCEEECCTTTCCHHHHHH
T ss_pred -----------------ccCCceEEEeeCCCHH------HHHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHH
Confidence 1257889999999976 6666664 7899999999742 2345677
Q ss_pred HHHHHHHH----HHHHHHHHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 193 AYNINVKG----TQTILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 193 ~~~~nv~~----~~~ll~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
.+++|+.+ ++.++..+++. +..+||++||..++....
T Consensus 106 ~~~~N~~g~~~~~~~~~~~~~~~-~~~~iv~~sS~~~~~~~~-------------------------------------- 146 (281)
T 3m1a_A 106 LFELHVFGPARLTRALLPQMRER-GSGSVVNISSFGGQLSFA-------------------------------------- 146 (281)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTCCCT--------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEEcCccccCCCC--------------------------------------
Confidence 89999999 44445555554 567999999986542211
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccc-cccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWI-KGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
....|+.+|...|.+.+.+. +++++++++||.|.++...+..... .......... ...... .......
T Consensus 147 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~ 220 (281)
T 3m1a_A 147 GFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGAAYFSEENPAYAEKV---GPTRQL---VQGSDGS 220 (281)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTCCCCEEECCBCTTTHHHH---HHHHHH---HHC----
T ss_pred CchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCccccccccccccccCCcchhhHHHh---HHHHHH---HhhccCC
Confidence 12789999999999987765 5899999999999987654322111 1111111111 100000 0112345
Q ss_pred CcccHHHHHHHHHHHHHhhh
Q psy17528 343 DVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~~ 362 (366)
.+++++|+|++++.+++.+.
T Consensus 221 ~~~~~~dva~a~~~~~~~~~ 240 (281)
T 3m1a_A 221 QPGDPAKAAAAIRLALDTEK 240 (281)
T ss_dssp -CBCHHHHHHHHHHHHHSSS
T ss_pred CCCCHHHHHHHHHHHHhCCC
Confidence 68889999999999998764
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-20 Score=177.46 Aligned_cols=208 Identities=12% Similarity=0.094 Sum_probs=144.5
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHH--HHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSIT--QRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|+|||||||||++++++|++.| ++|++++|+.+..... +.+.. +
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~R~~~~~~~~~~~~~~~---------~------------------- 52 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLG---HPTYVLFRPEVVSNIDKVQMLLY---------F------------------- 52 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTT---CCEEEECCSCCSSCHHHHHHHHH---------H-------------------
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCC---CcEEEEECCCcccchhHHHHHHH---------H-------------------
Confidence 5789999999999999999999998 7899999986532111 11111 0
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTIL 205 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll 205 (366)
...++.++.+|+.+++ .+..+++++|+|||+++..... .|+.++.+++
T Consensus 53 ------------------~~~~~~~~~~D~~d~~------~l~~~~~~~d~vi~~a~~~~~~--------~~~~~~~~l~ 100 (313)
T 1qyd_A 53 ------------------KQLGAKLIEASLDDHQ------RLVDALKQVDVVISALAGGVLS--------HHILEQLKLV 100 (313)
T ss_dssp ------------------HTTTCEEECCCSSCHH------HHHHHHTTCSEEEECCCCSSSS--------TTTTTHHHHH
T ss_pred ------------------HhCCeEEEeCCCCCHH------HHHHHHhCCCEEEECCccccch--------hhHHHHHHHH
Confidence 0146889999999977 8889999999999999975421 2677889999
Q ss_pred HHHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHH
Q psy17528 206 ALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVR 285 (366)
Q Consensus 206 ~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~ 285 (366)
+++++.+.+++||+ | .+....... +. ...| ....| .+|..+|++++
T Consensus 101 ~aa~~~g~v~~~v~-S-~~g~~~~~~--~~-~~~p----------------------------~~~~y-~sK~~~e~~~~ 146 (313)
T 1qyd_A 101 EAIKEAGNIKRFLP-S-EFGMDPDIM--EH-ALQP----------------------------GSITF-IDKRKVRRAIE 146 (313)
T ss_dssp HHHHHSCCCSEEEC-S-CCSSCTTSC--CC-CCSS----------------------------TTHHH-HHHHHHHHHHH
T ss_pred HHHHhcCCCceEEe-c-CCcCCcccc--cc-CCCC----------------------------CcchH-HHHHHHHHHHH
Confidence 99998733899985 3 332111100 00 0001 11568 99999999998
Q ss_pred HhcCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhhhh
Q psy17528 286 QVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYFLF 363 (366)
Q Consensus 286 ~~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~~ 363 (366)
+. +++++++||+.++|........... .....+....++++++..+++++++|+|++++.++..+..
T Consensus 147 ~~--g~~~~ilrp~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~~~~~i~~~Dva~~~~~~l~~~~~ 213 (313)
T 1qyd_A 147 AA--SIPYTYVSSNMFAGYFAGSLAQLDG---------HMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQT 213 (313)
T ss_dssp HT--TCCBCEEECCEEHHHHTTTSSCTTC---------CSSCCSSEECCBTTSCSEEEEECHHHHHHHHHHHTTCGGG
T ss_pred hc--CCCeEEEEeceeccccccccccccc---------cccCCCCeEEEeCCCCceEEEEEHHHHHHHHHHHHhCccc
Confidence 65 7999999999998853221110000 0001223344566778899999999999999999987653
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=99.84 E-value=6.8e-20 Score=173.41 Aligned_cols=200 Identities=17% Similarity=0.177 Sum_probs=146.1
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+++|+||||||+||++++++|++.| . ++|++++|+..... .+.+.
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g-~-~~V~~~~R~~~~~~-~~~l~-------------------------------- 49 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDG-T-FKVRVVTRNPRKKA-AKELR-------------------------------- 49 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHC-S-SEEEEEESCTTSHH-HHHHH--------------------------------
T ss_pred CCEEEEECCCchHHHHHHHHHHhcC-C-ceEEEEEcCCCCHH-HHHHH--------------------------------
Confidence 4789999999999999999999986 2 68999999865321 01110
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILAL 207 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll~~ 207 (366)
..++.++.+|+.|++ .+..+++++|+|||+++..... ....|+.++.+++++
T Consensus 50 -----------------~~~~~~~~~D~~d~~------~l~~~~~~~d~vi~~a~~~~~~-----~~~~~~~~~~~~~~a 101 (299)
T 2wm3_A 50 -----------------LQGAEVVQGDQDDQV------IMELALNGAYATFIVTNYWESC-----SQEQEVKQGKLLADL 101 (299)
T ss_dssp -----------------HTTCEEEECCTTCHH------HHHHHHTTCSEEEECCCHHHHT-----CHHHHHHHHHHHHHH
T ss_pred -----------------HCCCEEEEecCCCHH------HHHHHHhcCCEEEEeCCCCccc-----cchHHHHHHHHHHHH
Confidence 136788999999977 8889999999999999853211 134578899999999
Q ss_pred HHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHHh
Q psy17528 208 AKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQV 287 (366)
Q Consensus 208 a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~ 287 (366)
+++. ++++||++|+..++... +. ..+..|+.+|..+|+++++.
T Consensus 102 a~~~-gv~~iv~~S~~~~~~~~----~~--------------------------------~~~~~y~~sK~~~e~~~~~~ 144 (299)
T 2wm3_A 102 ARRL-GLHYVVYSGLENIKKLT----AG--------------------------------RLAAAHFDGKGEVEEYFRDI 144 (299)
T ss_dssp HHHH-TCSEEEECCCCCHHHHT----TT--------------------------------SCCCHHHHHHHHHHHHHHHH
T ss_pred HHHc-CCCEEEEEcCccccccC----CC--------------------------------cccCchhhHHHHHHHHHHHC
Confidence 9887 78999998876654311 00 01267999999999999875
Q ss_pred cCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCccee-ecCCCCcccCcccHHHHHHHHHHHHHhh
Q psy17528 288 GHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRV-VQTDPNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 288 ~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-l~~~~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
+++++++||+.+||+.... +.... ...|.... ....++..++|++++|+|++++.++..+
T Consensus 145 --gi~~~ilrp~~~~~~~~~~---~~~~~---------~~~g~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~ 205 (299)
T 2wm3_A 145 --GVPMTSVRLPCYFENLLSH---FLPQK---------APDGKSYLLSLPTGDVPMDGMSVSDLGPVVLSLLKMP 205 (299)
T ss_dssp --TCCEEEEECCEEGGGGGTT---TCCEE---------CTTSSSEEECCCCTTSCEEEECGGGHHHHHHHHHHSH
T ss_pred --CCCEEEEeecHHhhhchhh---cCCcc---------cCCCCEEEEEecCCCCccceecHHHHHHHHHHHHcCh
Confidence 7999999999999964321 11100 01232111 1223677889999999999999999875
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-19 Score=165.56 Aligned_cols=205 Identities=18% Similarity=0.240 Sum_probs=147.0
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++++|+||||+|+||++++++|++.| ++|++++|+... +.+... .
T Consensus 4 ~~~~~~vlVTGasggiG~~~a~~l~~~G---~~V~~~~r~~~~------~~~~~~---------~--------------- 50 (244)
T 1cyd_A 4 NFSGLRALVTGAGKGIGRDTVKALHASG---AKVVAVTRTNSD------LVSLAK---------E--------------- 50 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCHHH------HHHHHH---------H---------------
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHH------HHHHHH---------h---------------
Confidence 3678999999999999999999999998 889999997421 111100 0
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh---CcCEEEEcCcccCh-------hhhHHHHH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS---QTTIIFHIAATVRF-------DEHIRTAY 194 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~---~~d~Vih~a~~~~~-------~~~~~~~~ 194 (366)
. ..+.++.+|+.+.+ .+.++++ .+|+|||+||.... ...++..+
T Consensus 51 ----------------~----~~~~~~~~D~~~~~------~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~ 104 (244)
T 1cyd_A 51 ----------------C----PGIEPVCVDLGDWD------ATEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSF 104 (244)
T ss_dssp ----------------S----TTCEEEECCTTCHH------HHHHHHTTCCCCSEEEECCCCCCCBCGGGCCHHHHHHHH
T ss_pred ----------------c----cCCCcEEecCCCHH------HHHHHHHHcCCCCEEEECCcccCCCCcccCCHHHHHHHH
Confidence 1 24567799999876 7777776 47999999996431 24567789
Q ss_pred HHHHHHHHHHHHHHHhc---CC-CcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCC
Q psy17528 195 NINVKGTQTILALAKRM---KG-LKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKP 270 (366)
Q Consensus 195 ~~nv~~~~~ll~~a~~~---~~-~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (366)
++|+.++..+++++.+. .+ .++||++||..++.... + .
T Consensus 105 ~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~---------~-----------------------------~ 146 (244)
T 1cyd_A 105 SVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFP---------N-----------------------------L 146 (244)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCT---------T-----------------------------B
T ss_pred hhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcCCCC---------C-----------------------------c
Confidence 99999998888876542 13 57999999987653211 0 1
Q ss_pred chHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcc
Q psy17528 271 NSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVV 345 (366)
Q Consensus 271 ~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v 345 (366)
..|+.+|...|.+++.+. ++++++++||+.|+++..... + . ...++.....+ ...++++
T Consensus 147 ~~Y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~--~----~-~~~~~~~~~~~---------~~~~~~~ 210 (244)
T 1cyd_A 147 ITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKV--S----A-DPEFARKLKER---------HPLRKFA 210 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHH--T----C-CHHHHHHHHHH---------STTSSCB
T ss_pred chhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcccccc--c----c-CHHHHHHHHhc---------CCccCCC
Confidence 679999999999998765 589999999999998743210 0 0 01122222221 1236799
Q ss_pred cHHHHHHHHHHHHHhhh
Q psy17528 346 PGDRVINAMAALAWYFL 362 (366)
Q Consensus 346 ~vdDva~ai~~~~~~~~ 362 (366)
+++|+|++++.++..+.
T Consensus 211 ~~~dva~~~~~l~~~~~ 227 (244)
T 1cyd_A 211 EVEDVVNSILFLLSDRS 227 (244)
T ss_dssp CHHHHHHHHHHHHSGGG
T ss_pred CHHHHHHHHHHHhCchh
Confidence 99999999999987653
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-19 Score=168.00 Aligned_cols=207 Identities=14% Similarity=0.127 Sum_probs=148.1
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++|+||||+|+||.+++++|++.| ++|++++|+... .+.+.+. +..
T Consensus 9 ~~~~~vlVtGasggiG~~la~~l~~~G---~~V~~~~r~~~~---~~~~~~~--------~~~----------------- 57 (255)
T 1fmc_A 9 LDGKCAIITGAGAGIGKEIAITFATAG---ASVVVSDINADA---ANHVVDE--------IQQ----------------- 57 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTT---CEEEEEESCHHH---HHHHHHH--------HHH-----------------
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCC---CEEEEEcCCHHH---HHHHHHH--------HHH-----------------
Confidence 568999999999999999999999998 889999997421 1111111 111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh------hhhHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF------DEHIRT 192 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~------~~~~~~ 192 (366)
...++.++.+|+++.+ .+..+++ ++|+|||+||.... ...++.
T Consensus 58 ------------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~ 113 (255)
T 1fmc_A 58 ------------------LGGQAFACRCDITSEQ------ELSALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRR 113 (255)
T ss_dssp ------------------TTCCEEEEECCTTCHH------HHHHHHHHHHHHHSSCCEEEECCCCCCCCCTTCCHHHHHH
T ss_pred ------------------hCCceEEEEcCCCCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCCCCCCHHHHHH
Confidence 1246888999999876 6666665 79999999997532 345677
Q ss_pred HHHHHHHHHHHHHHHHHh---cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCC
Q psy17528 193 AYNINVKGTQTILALAKR---MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGK 269 (366)
Q Consensus 193 ~~~~nv~~~~~ll~~a~~---~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (366)
.+++|+.++..+++.+.+ ..+.++||++||..++.... +
T Consensus 114 ~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~---------~----------------------------- 155 (255)
T 1fmc_A 114 AYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNI---------N----------------------------- 155 (255)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCT---------T-----------------------------
T ss_pred HHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcCCCC---------C-----------------------------
Confidence 899999999888887642 12567999999987653211 1
Q ss_pred CchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCc
Q psy17528 270 PNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDV 344 (366)
Q Consensus 270 ~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~ 344 (366)
...|+.+|...|.+++.+. .+++++++|||.++++..... .. ..+......+. ....+
T Consensus 156 ~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~Pg~v~t~~~~~~------~~--~~~~~~~~~~~---------~~~~~ 218 (255)
T 1fmc_A 156 MTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSV------IT--PEIEQKMLQHT---------PIRRL 218 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTT------CC--HHHHHHHHHTC---------SSCSC
T ss_pred CcccHHHHHHHHHHHHHHHHHhhhcCcEEEEEecccCcchhhhhc------cC--hHHHHHHHhcC---------CcccC
Confidence 1689999999999987765 589999999999998743210 00 11222222221 12458
Q ss_pred ccHHHHHHHHHHHHHhhh
Q psy17528 345 VPGDRVINAMAALAWYFL 362 (366)
Q Consensus 345 v~vdDva~ai~~~~~~~~ 362 (366)
++++|+|++++.++....
T Consensus 219 ~~~~dva~~~~~l~~~~~ 236 (255)
T 1fmc_A 219 GQPQDIANAALFLCSPAA 236 (255)
T ss_dssp BCHHHHHHHHHHHHSGGG
T ss_pred CCHHHHHHHHHHHhCCcc
Confidence 899999999999887543
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=8.1e-20 Score=165.71 Aligned_cols=191 Identities=17% Similarity=0.195 Sum_probs=136.5
Q ss_pred CCeEEEeCCcchHHHHHHHHHH-HhCCCccEEEEEEcCCC-CcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLL-RCCPQIRKIILLIRTRG-STSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll-~~g~~~~~V~~~~R~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|+||||+|+||++++++|+ +.| ++|++++|+.. ... + +..
T Consensus 5 mk~vlVtGasg~iG~~~~~~l~~~~g---~~V~~~~r~~~~~~~------~---------~~~----------------- 49 (221)
T 3r6d_A 5 YXYITILGAAGQIAQXLTATLLTYTD---MHITLYGRQLKTRIP------P---------EII----------------- 49 (221)
T ss_dssp CSEEEEESTTSHHHHHHHHHHHHHCC---CEEEEEESSHHHHSC------H---------HHH-----------------
T ss_pred EEEEEEEeCCcHHHHHHHHHHHhcCC---ceEEEEecCccccch------h---------hcc-----------------
Confidence 4579999999999999999999 788 89999999743 211 0 000
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTIL 205 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll 205 (366)
...++.++.+|+.+.+ .+.++++++|+|||+||.. |+. +++++
T Consensus 50 ------------------~~~~~~~~~~D~~d~~------~~~~~~~~~d~vv~~ag~~------------n~~-~~~~~ 92 (221)
T 3r6d_A 50 ------------------DHERVTVIEGSFQNPG------XLEQAVTNAEVVFVGAMES------------GSD-MASIV 92 (221)
T ss_dssp ------------------TSTTEEEEECCTTCHH------HHHHHHTTCSEEEESCCCC------------HHH-HHHHH
T ss_pred ------------------CCCceEEEECCCCCHH------HHHHHHcCCCEEEEcCCCC------------Chh-HHHHH
Confidence 1257889999999977 8899999999999999964 334 78889
Q ss_pred HHHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHH
Q psy17528 206 ALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVR 285 (366)
Q Consensus 206 ~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~ 285 (366)
+.+++. +.++||++||..++........ ++. . ....+.|+.+|...|.+++
T Consensus 93 ~~~~~~-~~~~iv~iSs~~~~~~~~~~~~---------------------~~~---~----~~~~~~y~~~K~~~e~~~~ 143 (221)
T 3r6d_A 93 KALSRX-NIRRVIGVSMAGLSGEFPVALE---------------------KWT---F----DNLPISYVQGERQARNVLR 143 (221)
T ss_dssp HHHHHT-TCCEEEEEEETTTTSCSCHHHH---------------------HHH---H----HTSCHHHHHHHHHHHHHHH
T ss_pred HHHHhc-CCCeEEEEeeceecCCCCcccc---------------------ccc---c----cccccHHHHHHHHHHHHHH
Confidence 988886 7889999999987753210000 000 0 0111379999999999998
Q ss_pred HhcCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHH--Hhhh
Q psy17528 286 QVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALA--WYFL 362 (366)
Q Consensus 286 ~~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~--~~~~ 362 (366)
.. +++++++||+.++++.... .+ ............+++.+|+|++++.++ ..+.
T Consensus 144 ~~--~i~~~~vrpg~v~~~~~~~--~~-------------------~~~~~~~~~~~~~~~~~dvA~~~~~l~~~~~~~ 199 (221)
T 3r6d_A 144 ES--NLNYTILRLTWLYNDPEXT--DY-------------------ELIPEGAQFNDAQVSREAVVKAIFDILHAADET 199 (221)
T ss_dssp HS--CSEEEEEEECEEECCTTCC--CC-------------------EEECTTSCCCCCEEEHHHHHHHHHHHHTCSCCG
T ss_pred hC--CCCEEEEechhhcCCCCCc--ce-------------------eeccCCccCCCceeeHHHHHHHHHHHHHhcChh
Confidence 64 7999999999999873211 00 000101111123899999999999999 6654
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.5e-19 Score=175.03 Aligned_cols=198 Identities=18% Similarity=0.175 Sum_probs=143.4
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
++++|+|||||||||++++++|++.| ++|++++|+.+... .+.+. .
T Consensus 4 ~~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~R~~~~~~-~~~l~------------~------------------ 49 (352)
T 1xgk_A 4 QKKTIAVVGATGRQGASLIRVAAAVG---HHVRAQVHSLKGLI-AEELQ------------A------------------ 49 (352)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTT---CCEEEEESCSCSHH-HHHHH------------T------------------
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCC---CEEEEEECCCChhh-HHHHh------------h------------------
Confidence 35789999999999999999999998 78999999865321 01110 0
Q ss_pred cccchhhhhhccccCCCCCCcEEEEecc-CCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQ-LEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTIL 205 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gD-l~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll 205 (366)
..++.++.+| +.+.+ .+.++++++|+|||+++... .+.|..+ ++++
T Consensus 50 ------------------~~~v~~v~~D~l~d~~------~l~~~~~~~d~Vi~~a~~~~--------~~~~~~~-~~l~ 96 (352)
T 1xgk_A 50 ------------------IPNVTLFQGPLLNNVP------LMDTLFEGAHLAFINTTSQA--------GDEIAIG-KDLA 96 (352)
T ss_dssp ------------------STTEEEEESCCTTCHH------HHHHHHTTCSEEEECCCSTT--------SCHHHHH-HHHH
T ss_pred ------------------cCCcEEEECCccCCHH------HHHHHHhcCCEEEEcCCCCC--------cHHHHHH-HHHH
Confidence 1368899999 99876 78899999999999987532 1236666 8899
Q ss_pred HHHHhcCC-CcEEEEeeCcce--ecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHH
Q psy17528 206 ALAKRMKG-LKSFVHVSTAYC--NCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAED 282 (366)
Q Consensus 206 ~~a~~~~~-~~~~v~iSS~~~--~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~ 282 (366)
+++++. + +++|||+||.++ ++. ..++.|+.+|..+|+
T Consensus 97 ~aa~~~-g~v~~~V~~SS~~~~~~~~---------------------------------------~~~~~y~~sK~~~E~ 136 (352)
T 1xgk_A 97 DAAKRA-GTIQHYIYSSMPDHSLYGP---------------------------------------WPAVPMWAPKFTVEN 136 (352)
T ss_dssp HHHHHH-SCCSEEEEEECCCGGGTSS---------------------------------------CCCCTTTHHHHHHHH
T ss_pred HHHHHc-CCccEEEEeCCccccccCC---------------------------------------CCCccHHHHHHHHHH
Confidence 999887 6 899999999762 110 012679999999999
Q ss_pred HHHHhcCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcce-eecCCCCcccCcccH-HHHHHHHHHHHHh
Q psy17528 283 LVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIR-VVQTDPNISMDVVPG-DRVINAMAALAWY 360 (366)
Q Consensus 283 ~l~~~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~l~~~~~~~~~~v~v-dDva~ai~~~~~~ 360 (366)
++++. +++++++||+ +||++..... ..-+. ......|... .++++++..++++++ +|+|++++.++..
T Consensus 137 ~~~~~--gi~~~ivrpg-~~g~~~~~~~--~~~~~-----~~~~~~g~~~~~~~~~~~~~~~~i~v~~Dva~ai~~~l~~ 206 (352)
T 1xgk_A 137 YVRQL--GLPSTFVYAG-IYNNNFTSLP--YPLFQ-----MELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFKD 206 (352)
T ss_dssp HHHTS--SSCEEEEEEC-EEGGGCBSSS--CSSCB-----EEECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHc--CCCEEEEecc-eecCCchhcc--ccccc-----ccccCCCceEEeeccCCCCceeeEecHHHHHHHHHHHHhC
Confidence 99875 7999999987 6887543210 00000 0000233322 335567788999999 9999999999987
Q ss_pred h
Q psy17528 361 F 361 (366)
Q Consensus 361 ~ 361 (366)
+
T Consensus 207 ~ 207 (352)
T 1xgk_A 207 G 207 (352)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-19 Score=171.64 Aligned_cols=204 Identities=15% Similarity=0.083 Sum_probs=139.9
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHH-HHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSIT-QRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
+++|+||||||+||++++++|++.| ++|++++|+.+..... ++...+ ..+.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~R~~~~~~~~~~~~~~~------~~l~------------------- 53 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAG---NPTYALVRKTITAANPETKEELI------DNYQ------------------- 53 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHT---CCEEEEECCSCCSSCHHHHHHHH------HHHH-------------------
T ss_pred CcEEEEECCCchHHHHHHHHHHhCC---CcEEEEECCCcccCChHHHHHHH------HHHH-------------------
Confidence 6789999999999999999999998 7899999986211111 111110 0000
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILA 206 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll~ 206 (366)
..++.++.+|+.+.+ .+..+++++|+|||+++... +.++.++++
T Consensus 54 ------------------~~~v~~v~~D~~d~~------~l~~~~~~~d~vi~~a~~~~------------~~~~~~l~~ 97 (307)
T 2gas_A 54 ------------------SLGVILLEGDINDHE------TLVKAIKQVDIVICAAGRLL------------IEDQVKIIK 97 (307)
T ss_dssp ------------------HTTCEEEECCTTCHH------HHHHHHTTCSEEEECSSSSC------------GGGHHHHHH
T ss_pred ------------------hCCCEEEEeCCCCHH------HHHHHHhCCCEEEECCcccc------------cccHHHHHH
Confidence 136789999999977 88999999999999999643 345677889
Q ss_pred HHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHH
Q psy17528 207 LAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQ 286 (366)
Q Consensus 207 ~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~ 286 (366)
++++.+.+++||+ |.++. . .+|.....| . ...| .+|...|+++++
T Consensus 98 aa~~~g~v~~~v~--S~~g~--~--~~~~~~~~p---~-------------------------~~~y-~sK~~~e~~~~~ 142 (307)
T 2gas_A 98 AIKEAGNVKKFFP--SEFGL--D--VDRHDAVEP---V-------------------------RQVF-EEKASIRRVIEA 142 (307)
T ss_dssp HHHHHCCCSEEEC--SCCSS--C--TTSCCCCTT---H-------------------------HHHH-HHHHHHHHHHHH
T ss_pred HHHhcCCceEEee--ccccc--C--cccccCCCc---c-------------------------hhHH-HHHHHHHHHHHH
Confidence 8888733899983 33321 1 111111111 0 1568 999999999987
Q ss_pred hcCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 287 VGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 287 ~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
. +++++++||+.+++.... .+.... .....+....++++++..+++++++|+|++++.++..+.
T Consensus 143 ~--~i~~~~lrp~~~~~~~~~---~~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~ 206 (307)
T 2gas_A 143 E--GVPYTYLCCHAFTGYFLR---NLAQLD-------ATDPPRDKVVILGDGNVKGAYVTEADVGTFTIRAANDPN 206 (307)
T ss_dssp H--TCCBEEEECCEETTTTGG---GTTCTT-------CSSCCSSEEEEETTSCSEEEEECHHHHHHHHHHHHTCGG
T ss_pred c--CCCeEEEEcceeeccccc---cccccc-------cccCCCCeEEEecCCCcceEEeeHHHHHHHHHHHHcCcc
Confidence 6 799999999998875421 111000 000122334456677888999999999999999998764
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.7e-19 Score=163.52 Aligned_cols=192 Identities=13% Similarity=0.105 Sum_probs=130.2
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+.+++||||||+|+||++++++|++.|. ++|++++|+.+..
T Consensus 21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~--~~V~~~~R~~~~~------------------------------------- 61 (236)
T 3qvo_A 21 GHMKNVLILGAGGQIARHVINQLADKQT--IKQTLFARQPAKI------------------------------------- 61 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCTT--EEEEEEESSGGGS-------------------------------------
T ss_pred CcccEEEEEeCCcHHHHHHHHHHHhCCC--ceEEEEEcChhhh-------------------------------------
Confidence 3468999999999999999999999972 5899999985421
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTIL 205 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll 205 (366)
.......+.++.+|+.|.+ .+.++++++|+|||+++..... ..+++++
T Consensus 62 ---------------~~~~~~~~~~~~~Dl~d~~------~~~~~~~~~D~vv~~a~~~~~~-----------~~~~~~~ 109 (236)
T 3qvo_A 62 ---------------HKPYPTNSQIIMGDVLNHA------ALKQAMQGQDIVYANLTGEDLD-----------IQANSVI 109 (236)
T ss_dssp ---------------CSSCCTTEEEEECCTTCHH------HHHHHHTTCSEEEEECCSTTHH-----------HHHHHHH
T ss_pred ---------------cccccCCcEEEEecCCCHH------HHHHHhcCCCEEEEcCCCCchh-----------HHHHHHH
Confidence 1112357899999999977 8999999999999999863311 2356788
Q ss_pred HHHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHH
Q psy17528 206 ALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVR 285 (366)
Q Consensus 206 ~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~ 285 (366)
+++++. ++++||++||..+++...... .+... .....+...|..+|+.+.
T Consensus 110 ~~~~~~-~~~~iV~iSS~~~~~~~~~~~-----~~~~~------------------------~~~~~~~~~~~~~~~~l~ 159 (236)
T 3qvo_A 110 AAMKAC-DVKRLIFVLSLGIYDEVPGKF-----VEWNN------------------------AVIGEPLKPFRRAADAIE 159 (236)
T ss_dssp HHHHHT-TCCEEEEECCCCC---------------------------------------------CGGGHHHHHHHHHHH
T ss_pred HHHHHc-CCCEEEEEecceecCCCCccc-----ccchh------------------------hcccchHHHHHHHHHHHH
Confidence 888886 788999999998875432100 00000 001233344555666665
Q ss_pred HhcCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 286 QVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 286 ~~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
. .++++++|||+.++++...... ...........+++++|+|++++.++..+.
T Consensus 160 ~--~gi~~~~vrPg~i~~~~~~~~~----------------------~~~~~~~~~~~~i~~~DvA~~i~~ll~~~~ 212 (236)
T 3qvo_A 160 A--SGLEYTILRPAWLTDEDIIDYE----------------------LTSRNEPFKGTIVSRKSVAALITDIIDKPE 212 (236)
T ss_dssp T--SCSEEEEEEECEEECCSCCCCE----------------------EECTTSCCSCSEEEHHHHHHHHHHHHHSTT
T ss_pred H--CCCCEEEEeCCcccCCCCcceE----------------------EeccCCCCCCcEECHHHHHHHHHHHHcCcc
Confidence 4 3799999999999987432110 011111112358999999999999998876
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-18 Score=163.18 Aligned_cols=211 Identities=20% Similarity=0.214 Sum_probs=149.4
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++++|+||||+|+||.+++++|++.| ++|++++|+... .+.+.+. +
T Consensus 13 ~l~~k~vlITGasggiG~~~a~~l~~~G---~~V~~~~r~~~~---~~~~~~~--------~------------------ 60 (278)
T 2bgk_A 13 RLQDKVAIITGGAGGIGETTAKLFVRYG---AKVVIADIADDH---GQKVCNN--------I------------------ 60 (278)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHH--------H------------------
T ss_pred cccCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEcCChhH---HHHHHHH--------h------------------
Confidence 3578999999999999999999999998 889999886321 1111110 0
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh---------hh
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF---------DE 188 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~---------~~ 188 (366)
.. ..++.++.+|+++.+ .+..+++ ++|+||||||.... ..
T Consensus 61 ----------------~~--~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~ 116 (278)
T 2bgk_A 61 ----------------GS--PDVISFVHCDVTKDE------DVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNE 116 (278)
T ss_dssp ----------------CC--TTTEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCSSCSSTTTCCHH
T ss_pred ----------------CC--CCceEEEECCCCCHH------HHHHHHHHHHHHcCCCCEEEECCcccCCCCCChhhCCHH
Confidence 00 136889999999976 6666665 78999999996531 24
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcc
Q psy17528 189 HIRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHI 265 (366)
Q Consensus 189 ~~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (366)
.++..+++|+.++..+++.+.+. .+.++||++||..++.... .+
T Consensus 117 ~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~--------~~------------------------- 163 (278)
T 2bgk_A 117 DFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGE--------GV------------------------- 163 (278)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCCT--------TS-------------------------
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEeeccccCCCC--------CC-------------------------
Confidence 56778999999999998877652 2567999999987663221 01
Q ss_pred cCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCc
Q psy17528 266 IGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNI 340 (366)
Q Consensus 266 ~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~ 340 (366)
...|+.+|...|.+++.+. ++++++++|||.|+++........ . .......... .+..
T Consensus 164 ----~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~---~---~~~~~~~~~~-------~~~~ 226 (278)
T 2bgk_A 164 ----SHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGV---D---SSRVEELAHQ-------AANL 226 (278)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSC---C---HHHHHHHHHH-------TCSS
T ss_pred ----CcchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeceecchhhhhhccc---c---hhHHHHhhhc-------cccc
Confidence 1679999999999987765 589999999999999865422110 0 1111111111 1112
Q ss_pred ccCcccHHHHHHHHHHHHHhh
Q psy17528 341 SMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 341 ~~~~v~vdDva~ai~~~~~~~ 361 (366)
...+++++|+|++++.++...
T Consensus 227 ~~~~~~~~dva~~~~~l~~~~ 247 (278)
T 2bgk_A 227 KGTLLRAEDVADAVAYLAGDE 247 (278)
T ss_dssp CSCCCCHHHHHHHHHHHHSGG
T ss_pred ccccCCHHHHHHHHHHHcCcc
Confidence 346899999999999988654
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.6e-19 Score=163.97 Aligned_cols=214 Identities=14% Similarity=0.136 Sum_probs=142.9
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
..+++++|+||||+|+||.+++++|++.| ++|++++|+... .+.+.+. +... |..
T Consensus 3 ~~~~~k~vlITGasggiG~~la~~l~~~G---~~V~~~~r~~~~---~~~~~~~--------~~~~----------~~~- 57 (264)
T 2pd6_A 3 NRLRSALALVTGAGSGIGRAVSVRLAGEG---ATVAACDLDRAA---AQETVRL--------LGGP----------GSK- 57 (264)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSHHH---HHHHHHT--------C-----------------
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCChHH---HHHHHHH--------HHhc----------Ccc-
Confidence 34678999999999999999999999998 899999997421 1111111 0000 000
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhC-------c-CEEEEcCcccC-------hhh
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQ-------T-TIIFHIAATVR-------FDE 188 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~-------~-d~Vih~a~~~~-------~~~ 188 (366)
......++.++.+|+++.+ .+.++++. + |+||||||... ...
T Consensus 58 -----------------~~~~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~ 114 (264)
T 2pd6_A 58 -----------------EGPPRGNHAAFQADVSEAR------AARCLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSED 114 (264)
T ss_dssp -----------------------CCEEEECCTTSHH------HHHHHHHHHHHHHSSCCSEEEECCCCCCCBCGGGCCHH
T ss_pred -----------------ccccCcceEEEEecCCCHH------HHHHHHHHHHHHhCCCCeEEEECCCcCCCcchhhCCHH
Confidence 0001146788999999876 66666653 4 99999999753 234
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc---CC-CcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhc
Q psy17528 189 HIRTAYNINVKGTQTILALAKRM---KG-LKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEH 264 (366)
Q Consensus 189 ~~~~~~~~nv~~~~~ll~~a~~~---~~-~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 264 (366)
.++..+++|+.++..+++++.+. .+ ..+||++||..++....
T Consensus 115 ~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------------------------------- 160 (264)
T 2pd6_A 115 DWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGNV---------------------------------- 160 (264)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHCCT----------------------------------
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhhccCCC----------------------------------
Confidence 56788999999999998877642 12 56999999986542211
Q ss_pred ccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCC
Q psy17528 265 IIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPN 339 (366)
Q Consensus 265 ~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~ 339 (366)
....|+.+|...|.+.+.+. ++++++++|||.|+++...... ..+......+ .
T Consensus 161 ----~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~---------~~~~~~~~~~---------~ 218 (264)
T 2pd6_A 161 ----GQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQKVP---------QKVVDKITEM---------I 218 (264)
T ss_dssp ----TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSCC-------------------CTGGG---------C
T ss_pred ----CChhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeecccccchhhcC---------HHHHHHHHHh---------C
Confidence 01689999999998887654 5899999999999998643210 0011111111 1
Q ss_pred cccCcccHHHHHHHHHHHHHhh
Q psy17528 340 ISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 340 ~~~~~v~vdDva~ai~~~~~~~ 361 (366)
....+++++|+|++++.++...
T Consensus 219 ~~~~~~~~~dva~~~~~l~~~~ 240 (264)
T 2pd6_A 219 PMGHLGDPEDVADVVAFLASED 240 (264)
T ss_dssp TTCSCBCHHHHHHHHHHHHSGG
T ss_pred CCCCCCCHHHHHHHHHHHcCCc
Confidence 1235789999999999988754
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=7.4e-20 Score=173.24 Aligned_cols=204 Identities=15% Similarity=0.181 Sum_probs=140.6
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+++|+|||||||||++++++|++.| ++|++++|+.+.....++...+ ..+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~l~R~~~~~~~~~~~~~~------~~l--------------------- 53 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLG---HPTFLLVRESTASSNSEKAQLL------ESF--------------------- 53 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTT---CCEEEECCCCCTTTTHHHHHHH------HHH---------------------
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCC---CCEEEEECCcccccCHHHHHHH------HHH---------------------
Confidence 5789999999999999999999998 7899999986532001111100 000
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILAL 207 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll~~ 207 (366)
...++.++.+|+.|.+ .+..+++++|+|||+++... +.++.+++++
T Consensus 54 ----------------~~~~v~~v~~D~~d~~------~l~~~~~~~d~vi~~a~~~~------------~~~~~~l~~a 99 (308)
T 1qyc_A 54 ----------------KASGANIVHGSIDDHA------SLVEAVKNVDVVISTVGSLQ------------IESQVNIIKA 99 (308)
T ss_dssp ----------------HTTTCEEECCCTTCHH------HHHHHHHTCSEEEECCCGGG------------SGGGHHHHHH
T ss_pred ----------------HhCCCEEEEeccCCHH------HHHHHHcCCCEEEECCcchh------------hhhHHHHHHH
Confidence 0146889999999977 78899999999999998642 3456788999
Q ss_pred HHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHHh
Q psy17528 208 AKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQV 287 (366)
Q Consensus 208 a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~ 287 (366)
+++.+++++||+ |+ ++. . .+|.....| . ...| .+|...|+++++.
T Consensus 100 a~~~g~v~~~v~-S~-~g~--~--~~~~~~~~p---~-------------------------~~~y-~sK~~~e~~~~~~ 144 (308)
T 1qyc_A 100 IKEVGTVKRFFP-SE-FGN--D--VDNVHAVEP---A-------------------------KSVF-EVKAKVRRAIEAE 144 (308)
T ss_dssp HHHHCCCSEEEC-SC-CSS--C--TTSCCCCTT---H-------------------------HHHH-HHHHHHHHHHHHH
T ss_pred HHhcCCCceEee-cc-ccc--C--ccccccCCc---c-------------------------hhHH-HHHHHHHHHHHhc
Confidence 888733899984 43 221 1 111111111 0 1468 9999999999876
Q ss_pred cCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 288 GHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 288 ~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
+++++++||+.++|.......... .....+....++++++..++|++++|+|++++.++..+.
T Consensus 145 --~~~~~~~r~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~ 207 (308)
T 1qyc_A 145 --GIPYTYVSSNCFAGYFLRSLAQAG----------LTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPR 207 (308)
T ss_dssp --TCCBEEEECCEEHHHHTTTTTCTT----------CSSCCSSEEEEETTSCCEEEEECHHHHHHHHHTTSSCGG
T ss_pred --CCCeEEEEeceecccccccccccc----------ccCCCCCceEEecCCCceEEEecHHHHHHHHHHHHhCcc
Confidence 699999999999885332111000 001123344566778889999999999999999887664
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=99.82 E-value=7.4e-20 Score=170.82 Aligned_cols=212 Identities=16% Similarity=0.107 Sum_probs=149.7
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++|++|||||+|+||.+++++|++.| .+|++++|+... .+...+.
T Consensus 5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~---~~~~~~~--------------------------- 51 (259)
T 4e6p_A 5 RLEGKSALITGSARGIGRAFAEAYVREG---ATVAIADIDIER---ARQAAAE--------------------------- 51 (259)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHH---------------------------
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHH---------------------------
Confidence 4678999999999999999999999999 889999996421 1111110
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHI 190 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~ 190 (366)
...++.++.+|+++.+ .+..+++ ++|++|||||... ....+
T Consensus 52 -------------------~~~~~~~~~~D~~~~~------~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~ 106 (259)
T 4e6p_A 52 -------------------IGPAAYAVQMDVTRQD------SIDAAIAATVEHAGGLDILVNNAALFDLAPIVEITRESY 106 (259)
T ss_dssp -------------------HCTTEEEEECCTTCHH------HHHHHHHHHHHHSSSCCEEEECCCCCCCBCGGGCCHHHH
T ss_pred -------------------hCCCceEEEeeCCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHH
Confidence 1246788999999987 6666665 7899999999743 23456
Q ss_pred HHHHHHHHHHHHHHHHHHHhc----CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 191 RTAYNINVKGTQTILALAKRM----KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~----~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
+..+++|+.++..+++.+.+. +...++|++||..++....
T Consensus 107 ~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------------------------------ 150 (259)
T 4e6p_A 107 EKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRRGEA------------------------------------ 150 (259)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCT------------------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhccCCC------------------------------------
Confidence 788999999999988876532 2246899999987652211
Q ss_pred CCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHh---cCcceeecCCC
Q psy17528 267 GGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAG---TGLIRVVQTDP 338 (366)
Q Consensus 267 ~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~l~~~~ 338 (366)
....|+.+|...+.+.+.+. +++++++++||.|+++..... ..+..... .+.........
T Consensus 151 --~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 218 (259)
T 4e6p_A 151 --LVAIYCATKAAVISLTQSAGLDLIKHRINVNAIAPGVVDGEHWDGV----------DALFARYENRPRGEKKRLVGEA 218 (259)
T ss_dssp --TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTHHHH----------HHHHHHHHTCCTTHHHHHHHHH
T ss_pred --CChHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEECCCccchhhhh----------hhhhhhhccCChHHHHHHHhcc
Confidence 11679999999999988765 589999999999998753210 01111111 11111112223
Q ss_pred CcccCcccHHHHHHHHHHHHHhhh
Q psy17528 339 NISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 339 ~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
.....+++++|+|++++.++....
T Consensus 219 ~p~~r~~~~~dva~~v~~L~s~~~ 242 (259)
T 4e6p_A 219 VPFGRMGTAEDLTGMAIFLASAES 242 (259)
T ss_dssp STTSSCBCTHHHHHHHHHTTSGGG
T ss_pred CCCCCCcCHHHHHHHHHHHhCCcc
Confidence 445779999999999998876543
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=7.7e-19 Score=162.06 Aligned_cols=207 Identities=12% Similarity=0.103 Sum_probs=147.6
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcC-CCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRT-RGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
.+++++|+||||+|+||++++++|++.| ++|++++|+ ... .+.+.+.+. .
T Consensus 4 ~l~~k~vlVTGasggiG~~~a~~l~~~G---~~V~~~~r~~~~~---~~~~~~~~~--------~--------------- 54 (258)
T 3afn_B 4 DLKGKRVLITGSSQGIGLATARLFARAG---AKVGLHGRKAPAN---IDETIASMR--------A--------------- 54 (258)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSCCTT---HHHHHHHHH--------H---------------
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEECCCchhh---HHHHHHHHH--------h---------------
Confidence 3578999999999999999999999998 889999998 432 112211111 1
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcc-cC-------hhh
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAAT-VR-------FDE 188 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~-~~-------~~~ 188 (366)
...++.++.+|+.+.+ .+..+++ ++|+||||||. .. ...
T Consensus 55 --------------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~g~id~vi~~Ag~~~~~~~~~~~~~~ 108 (258)
T 3afn_B 55 --------------------DGGDAAFFAADLATSE------ACQQLVDEFVAKFGGIDVLINNAGGLVGRKPLPEIDDT 108 (258)
T ss_dssp --------------------TTCEEEEEECCTTSHH------HHHHHHHHHHHHHSSCSEEEECCCCCCCCCCGGGCCHH
T ss_pred --------------------cCCceEEEECCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCcCCcCccccCCHH
Confidence 1247889999999976 6776665 79999999996 22 123
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc--------CCCcEEEEeeCcceec-CccccccccCCCCCChHHHHHHhhhcchHHHH
Q psy17528 189 HIRTAYNINVKGTQTILALAKRM--------KGLKSFVHVSTAYCNC-DRKFIAEKFYPPVFTAEELSALVAHASDEEIA 259 (366)
Q Consensus 189 ~~~~~~~~nv~~~~~ll~~a~~~--------~~~~~~v~iSS~~~~~-~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~ 259 (366)
.++..+++|+.++..+++.+.+. +...++|++||.+++. .. ++
T Consensus 109 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~---------~~------------------- 160 (258)
T 3afn_B 109 FYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTGGG---------PG------------------- 160 (258)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHHCCC---------TT-------------------
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhccCCC---------CC-------------------
Confidence 46778899999999888765421 1126899999987653 11 01
Q ss_pred hhhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceee
Q psy17528 260 LLNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVV 334 (366)
Q Consensus 260 ~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l 334 (366)
...|+.+|...|.+++.+. .+++++++||+.|+++..... . ..+......+
T Consensus 161 ----------~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~-------~--~~~~~~~~~~----- 216 (258)
T 3afn_B 161 ----------AGLYGAAKAFLHNVHKNWVDFHTKDGVRFNIVSPGTVDTAFHADK-------T--QDVRDRISNG----- 216 (258)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSGGGTTC-------C--HHHHHHHHTT-----
T ss_pred ----------chHHHHHHHHHHHHHHHHHHhhcccCeEEEEEeCCCccccccccc-------C--HHHHHHHhcc-----
Confidence 1689999999999987765 489999999999999754321 0 1122222222
Q ss_pred cCCCCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 335 QTDPNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 335 ~~~~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
.....+++++|+|++++.++....
T Consensus 217 ----~~~~~~~~~~dva~~~~~l~~~~~ 240 (258)
T 3afn_B 217 ----IPMGRFGTAEEMAPAFLFFASHLA 240 (258)
T ss_dssp ----CTTCSCBCGGGTHHHHHHHHCHHH
T ss_pred ----CCCCcCCCHHHHHHHHHHHhCcch
Confidence 123468999999999999887653
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-18 Score=161.57 Aligned_cols=194 Identities=14% Similarity=0.152 Sum_probs=145.2
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++||||||+|+||.+++++|++.| .+|++++|+....
T Consensus 26 ~~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~~------------------------------------- 65 (260)
T 3un1_A 26 NQQKVVVITGASQGIGAGLVRAYRDRN---YRVVATSRSIKPS------------------------------------- 65 (260)
T ss_dssp TTCCEEEESSCSSHHHHHHHHHHHHTT---CEEEEEESSCCCC-------------------------------------
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCChhhc-------------------------------------
Confidence 568999999999999999999999999 8999999975421
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
...++.++.+|+++.+ .+..+++ ++|++|||||... ....++
T Consensus 66 ------------------~~~~~~~~~~Dv~d~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~ 121 (260)
T 3un1_A 66 ------------------ADPDIHTVAGDISKPE------TADRIVREGIERFGRIDSLVNNAGVFLAKPFVEMTQEDYD 121 (260)
T ss_dssp ------------------SSTTEEEEESCTTSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHH
T ss_pred ------------------ccCceEEEEccCCCHH------HHHHHHHHHHHHCCCCCEEEECCCCCCCCChhhCCHHHHH
Confidence 1236889999999987 6666665 7899999999753 234567
Q ss_pred HHHHHHHHHHHHHHHHHH----hcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 192 TAYNINVKGTQTILALAK----RMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~----~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
..+++|+.++..+++++. +. +..++|++||..++.... .
T Consensus 122 ~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~~~~~~~-------~----------------------------- 164 (260)
T 3un1_A 122 HNLGVNVAGFFHITQRAAAEMLKQ-GSGHIVSITTSLVDQPMV-------G----------------------------- 164 (260)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCTTTTSCBT-------T-----------------------------
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHc-CCcEEEEEechhhccCCC-------C-----------------------------
Confidence 889999999999988763 33 567999999976542110 0
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
.....|+.+|...+.+.+.+. +|+++++++||.|+++.... . ...... ......
T Consensus 165 ~~~~~Y~~sKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~--~----------~~~~~~---------~~~p~~ 223 (260)
T 3un1_A 165 MPSALASLTKGGLNAVTRSLAMEFSRSGVRVNAVSPGVIKTPMHPA--E----------THSTLA---------GLHPVG 223 (260)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECCBCCTTSCG--G----------GHHHHH---------TTSTTS
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhCcCCeEEEEEeecCCCCCCCCH--H----------HHHHHh---------ccCCCC
Confidence 011689999999999988766 58999999999999985431 0 001111 112345
Q ss_pred CcccHHHHHHHHHHHHHhh
Q psy17528 343 DVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~ 361 (366)
.+.+++|+|++++.+....
T Consensus 224 r~~~~~dva~av~~L~~~~ 242 (260)
T 3un1_A 224 RMGEIRDVVDAVLYLEHAG 242 (260)
T ss_dssp SCBCHHHHHHHHHHHHHCT
T ss_pred CCcCHHHHHHHHHHhcccC
Confidence 6788999999999885443
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-18 Score=160.40 Aligned_cols=209 Identities=16% Similarity=0.149 Sum_probs=147.1
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++|+||||+|+||++++++|++.| ++|++++|+... .+.+.+. ++.
T Consensus 11 l~~k~vlItGasggiG~~la~~l~~~G---~~V~~~~r~~~~---~~~~~~~--------l~~----------------- 59 (260)
T 3awd_A 11 LDNRVAIVTGGAQNIGLACVTALAEAG---ARVIIADLDEAM---ATKAVED--------LRM----------------- 59 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHH--------HHH-----------------
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHH--------HHh-----------------
Confidence 568999999999999999999999998 899999997421 1111111 111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC--------hhhhH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR--------FDEHI 190 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~--------~~~~~ 190 (366)
...++.++.+|+++.+ .+.++++ ++|+||||||... ....+
T Consensus 60 ------------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~ 115 (260)
T 3awd_A 60 ------------------EGHDVSSVVMDVTNTE------SVQNAVRSVHEQEGRVDILVACAGICISEVKAEDMTDGQW 115 (260)
T ss_dssp ------------------TTCCEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCSCCTTTCCHHHH
T ss_pred ------------------cCCceEEEEecCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHH
Confidence 1246889999999976 6666654 6899999999643 12345
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 191 RTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
...+++|+.++..+++.+.+. .+..++|++||.+++.... +.+
T Consensus 116 ~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~-------~~~--------------------------- 161 (260)
T 3awd_A 116 LKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGLIVNR-------PQQ--------------------------- 161 (260)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCS-------SSC---------------------------
T ss_pred HHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEecchhcccCC-------CCC---------------------------
Confidence 778899999999988876541 2567999999987653211 000
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
...|+.+|...|.+++.+. ++++++++|||.|+++.... . .. ...+......+. ...
T Consensus 162 --~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~~--~----~~-~~~~~~~~~~~~---------~~~ 223 (260)
T 3awd_A 162 --QAAYNASKAGVHQYIRSLAAEWAPHGIRANAVAPTYIETTLTRF--G----ME-KPELYDAWIAGT---------PMG 223 (260)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTHH--H----HT-CHHHHHHHHHTC---------TTS
T ss_pred --ccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeeccchhhc--c----cC-ChHHHHHHHhcC---------CcC
Confidence 1679999999999987765 58999999999999985420 0 00 011222222211 124
Q ss_pred CcccHHHHHHHHHHHHHhh
Q psy17528 343 DVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~ 361 (366)
.+++.+|+|++++.++...
T Consensus 224 ~~~~~~dva~~~~~l~~~~ 242 (260)
T 3awd_A 224 RVGQPDEVASVVQFLASDA 242 (260)
T ss_dssp SCBCHHHHHHHHHHHHSGG
T ss_pred CCCCHHHHHHHHHHHhCch
Confidence 5889999999999988654
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=99.81 E-value=8.9e-19 Score=163.20 Aligned_cols=205 Identities=16% Similarity=0.138 Sum_probs=133.4
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++|+||||+|+||.+++++|++.| ++|++++|+... .+.+.+. +..
T Consensus 12 l~~k~vlITGasggiG~~la~~l~~~G---~~V~~~~r~~~~---~~~~~~~--------~~~----------------- 60 (266)
T 1xq1_A 12 LKAKTVLVTGGTKGIGHAIVEEFAGFG---AVIHTCARNEYE---LNECLSK--------WQK----------------- 60 (266)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHH--------HHH-----------------
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHH--------HHh-----------------
Confidence 568999999999999999999999998 789999997421 1111111 111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH--------hCcCEEEEcCcccC-------hhhhH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI--------SQTTIIFHIAATVR-------FDEHI 190 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~--------~~~d~Vih~a~~~~-------~~~~~ 190 (366)
...++.++.+|+.+.+ .+..++ .++|+||||||... ....+
T Consensus 61 ------------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~ 116 (266)
T 1xq1_A 61 ------------------KGFQVTGSVCDASLRP------EREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDF 116 (266)
T ss_dssp ------------------TTCCEEEEECCTTSHH------HHHHHHHHHHHHHTTCCSEEEEECCC------CCCCHHHH
T ss_pred ------------------cCCeeEEEECCCCCHH------HHHHHHHHHHHHhCCCCcEEEECCCCCCCCChhhCCHHHH
Confidence 1246888999999876 566555 46899999999743 23456
Q ss_pred HHHHHHHHHHHHHHHHHHH----hcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 191 RTAYNINVKGTQTILALAK----RMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~----~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
+..+++|+.++..+++++. +. +.++||++||..++....
T Consensus 117 ~~~~~~n~~g~~~l~~~~~~~~~~~-~~~~iv~isS~~~~~~~~------------------------------------ 159 (266)
T 1xq1_A 117 SFHISTNLESAYHLSQLAHPLLKAS-GCGNIIFMSSIAGVVSAS------------------------------------ 159 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-SSCEEEEEC---------------------------------------------
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEccchhccCCC------------------------------------
Confidence 7789999999999988873 33 567999999987653210
Q ss_pred CCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcc
Q psy17528 267 GGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNIS 341 (366)
Q Consensus 267 ~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~ 341 (366)
....|+.+|...|.+++.+. ++++++++|||.|+++...... . ..+...... ....
T Consensus 160 --~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~--~------~~~~~~~~~---------~~~~ 220 (266)
T 1xq1_A 160 --VGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVY--D------DEFKKVVIS---------RKPL 220 (266)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC---------------------------------------
T ss_pred --CCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEeeCCCccchhhhhc--C------HHHHHHHHh---------cCCC
Confidence 01689999999999987765 4899999999999998643210 0 000111111 1112
Q ss_pred cCcccHHHHHHHHHHHHHhh
Q psy17528 342 MDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 342 ~~~v~vdDva~ai~~~~~~~ 361 (366)
..+++++|+|++++.++...
T Consensus 221 ~~~~~~~dva~~~~~l~~~~ 240 (266)
T 1xq1_A 221 GRFGEPEEVSSLVAFLCMPA 240 (266)
T ss_dssp ---CCGGGGHHHHHHHTSGG
T ss_pred CCCcCHHHHHHHHHHHcCcc
Confidence 35789999999999988654
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.6e-19 Score=160.11 Aligned_cols=185 Identities=13% Similarity=0.111 Sum_probs=139.4
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
|+|+||||+|+||++++++|++. +|++++|+... .+.+.+.
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~-----~V~~~~r~~~~---~~~~~~~------------------------------- 41 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH-----DLLLSGRRAGA---LAELARE------------------------------- 41 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS-----EEEEECSCHHH---HHHHHHH-------------------------------
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC-----CEEEEECCHHH---HHHHHHh-------------------------------
Confidence 58999999999999999999775 88899986421 1111110
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh---CcCEEEEcCcccCh-------hhhHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS---QTTIIFHIAATVRF-------DEHIRTAYNINV 198 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~---~~d~Vih~a~~~~~-------~~~~~~~~~~nv 198 (366)
. .. .++.+|+.+.+ .+..+++ ++|+|||+||.... ...+...+++|+
T Consensus 42 ------------~----~~-~~~~~D~~~~~------~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~ 98 (207)
T 2yut_A 42 ------------V----GA-RALPADLADEL------EAKALLEEAGPLDLLVHAVGKAGRASVREAGRDLVEEMLAAHL 98 (207)
T ss_dssp ------------H----TC-EECCCCTTSHH------HHHHHHHHHCSEEEEEECCCCCCCBCSCC---CHHHHHHHHHH
T ss_pred ------------c----cC-cEEEeeCCCHH------HHHHHHHhcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHh
Confidence 0 11 67889999877 7888877 89999999997532 235677899999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHH
Q psy17528 199 KGTQTILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKA 278 (366)
Q Consensus 199 ~~~~~ll~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~ 278 (366)
.++..+++++.+. +.++||++||..++.... + ...|+.+|.
T Consensus 99 ~~~~~l~~~~~~~-~~~~iv~~sS~~~~~~~~---------~-----------------------------~~~Y~~sK~ 139 (207)
T 2yut_A 99 LTAAFVLKHARFQ-KGARAVFFGAYPRYVQVP---------G-----------------------------FAAYAAAKG 139 (207)
T ss_dssp HHHHHHHHHCCEE-EEEEEEEECCCHHHHSST---------T-----------------------------BHHHHHHHH
T ss_pred HHHHHHHHHHHhc-CCcEEEEEcChhhccCCC---------C-----------------------------cchHHHHHH
Confidence 9999999998554 567999999987653211 1 168999999
Q ss_pred HHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHH
Q psy17528 279 TAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINA 353 (366)
Q Consensus 279 ~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~a 353 (366)
..|.+++.+. ++++++++||+.++++... ..+.....+++++|+|++
T Consensus 140 a~~~~~~~~~~~~~~~gi~v~~v~pg~v~t~~~~----------------------------~~~~~~~~~~~~~dva~~ 191 (207)
T 2yut_A 140 ALEAYLEAARKELLREGVHLVLVRLPAVATGLWA----------------------------PLGGPPKGALSPEEAARK 191 (207)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEECCCCBCSGGGG----------------------------GGTSCCTTCBCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhCCEEEEEecCcccCCCcc----------------------------ccCCCCCCCCCHHHHHHH
Confidence 9999988765 5899999999999986310 011234789999999999
Q ss_pred HHHHHHhhh
Q psy17528 354 MAALAWYFL 362 (366)
Q Consensus 354 i~~~~~~~~ 362 (366)
++.+++.+.
T Consensus 192 ~~~~~~~~~ 200 (207)
T 2yut_A 192 VLEGLFREP 200 (207)
T ss_dssp HHHHHC--C
T ss_pred HHHHHhCCC
Confidence 999987664
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=6.8e-19 Score=160.91 Aligned_cols=196 Identities=13% Similarity=0.137 Sum_probs=143.8
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+++|+||||+|+||.+++++|++.| ++|++++|+..
T Consensus 2 ~k~vlVtGasggiG~~la~~l~~~G---~~V~~~~r~~~----------------------------------------- 37 (242)
T 1uay_A 2 ERSALVTGGASGLGRAAALALKARG---YRVVVLDLRRE----------------------------------------- 37 (242)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHT---CEEEEEESSCC-----------------------------------------
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEccCcc-----------------------------------------
Confidence 5899999999999999999999998 88999999753
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh------CcCEEEEcCcccChh-----------hhH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS------QTTIIFHIAATVRFD-----------EHI 190 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~------~~d~Vih~a~~~~~~-----------~~~ 190 (366)
...+.++.+|+++.+ .+.++++ ++|+|||+||..... ..+
T Consensus 38 -----------------~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~ 94 (242)
T 1uay_A 38 -----------------GEDLIYVEGDVTREE------DVRRAVARAQEEAPLFAVVSAAGVGLAEKILGKEGPHGLESF 94 (242)
T ss_dssp -----------------SSSSEEEECCTTCHH------HHHHHHHHHHHHSCEEEEEECCCCCCCCCSBCSSSBCCHHHH
T ss_pred -----------------ccceEEEeCCCCCHH------HHHHHHHHHHhhCCceEEEEcccccCcccccccccccchHHH
Confidence 134578999999976 6777765 789999999975321 166
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-C--C------CcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhh
Q psy17528 191 RTAYNINVKGTQTILALAKRM-K--G------LKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALL 261 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~-~--~------~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~ 261 (366)
+..+++|+.++..+++++.+. . + ..+||++||..++....
T Consensus 95 ~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~------------------------------- 143 (242)
T 1uay_A 95 RRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQI------------------------------- 143 (242)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCCT-------------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCCC-------------------------------
Confidence 788999999999999887653 1 1 23899999987653221
Q ss_pred hhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecC
Q psy17528 262 NEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQT 336 (366)
Q Consensus 262 ~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~ 336 (366)
....|+.+|...+.+++... ++++++++|||.|+++..... . ..+........+ +
T Consensus 144 -------~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~-------~--~~~~~~~~~~~~--~-- 203 (242)
T 1uay_A 144 -------GQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGL-------P--EKAKASLAAQVP--F-- 203 (242)
T ss_dssp -------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTS-------C--HHHHHHHHTTCC--S--
T ss_pred -------CCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccCcchhhhcc-------c--hhHHHHHHhhCC--C--
Confidence 12689999999998887655 589999999999998743211 1 111122222111 0
Q ss_pred CCCcccCcccHHHHHHHHHHHHHhhhhcC
Q psy17528 337 DPNISMDVVPGDRVINAMAALAWYFLFSC 365 (366)
Q Consensus 337 ~~~~~~~~v~vdDva~ai~~~~~~~~~~~ 365 (366)
...+++++|+|++++.++.....+|
T Consensus 204 ----~~~~~~~~dva~~~~~l~~~~~~~G 228 (242)
T 1uay_A 204 ----PPRLGRPEEYAALVLHILENPMLNG 228 (242)
T ss_dssp ----SCSCCCHHHHHHHHHHHHHCTTCCS
T ss_pred ----cccCCCHHHHHHHHHHHhcCCCCCC
Confidence 0347899999999999987643333
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.9e-20 Score=174.11 Aligned_cols=199 Identities=14% Similarity=0.123 Sum_probs=140.3
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC-CCcCH--HHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR-GSTSI--TQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~-~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
+++|+||||||+||++++++|++.| ++|++++|+. +.... .+.+.. +.
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~R~~~~~~~~~~~~~l~~---------~~----------------- 54 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSFS---HPTFIYARPLTPDSTPSSVQLREE---------FR----------------- 54 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTT---CCEEEEECCCCTTCCHHHHHHHHH---------HH-----------------
T ss_pred ccEEEEEcCCchhHHHHHHHHHhCC---CcEEEEECCcccccChHHHHHHHH---------hh-----------------
Confidence 5789999999999999999999998 7899999986 32111 111111 00
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTI 204 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~l 204 (366)
..++.++.+|+.|.+ .+..+++++|+|||+++... +.++.++
T Consensus 55 --------------------~~~v~~v~~D~~d~~------~l~~a~~~~d~vi~~a~~~~------------~~~~~~l 96 (321)
T 3c1o_A 55 --------------------SMGVTIIEGEMEEHE------KMVSVLKQVDIVISALPFPM------------ISSQIHI 96 (321)
T ss_dssp --------------------HTTCEEEECCTTCHH------HHHHHHTTCSEEEECCCGGG------------SGGGHHH
T ss_pred --------------------cCCcEEEEecCCCHH------HHHHHHcCCCEEEECCCccc------------hhhHHHH
Confidence 146789999999977 89999999999999998642 4566789
Q ss_pred HHHHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHH
Q psy17528 205 LALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLV 284 (366)
Q Consensus 205 l~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l 284 (366)
++++.+.+++++||+ |.+.. . .+|..... +. .+.| .+|..+|+++
T Consensus 97 ~~aa~~~g~v~~~v~--S~~g~--~--~~~~~~~~---p~-------------------------~~~y-~sK~~~e~~~ 141 (321)
T 3c1o_A 97 INAIKAAGNIKRFLP--SDFGC--E--EDRIKPLP---PF-------------------------ESVL-EKKRIIRRAI 141 (321)
T ss_dssp HHHHHHHCCCCEEEC--SCCSS--C--GGGCCCCH---HH-------------------------HHHH-HHHHHHHHHH
T ss_pred HHHHHHhCCccEEec--ccccc--C--ccccccCC---Cc-------------------------chHH-HHHHHHHHHH
Confidence 999888723889983 33321 1 11111000 00 1578 9999999999
Q ss_pred HHhcCCCCEEEEecCccccCCCCCCCccccccchHHHHHH---HHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhh
Q psy17528 285 RQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALAL---GAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 285 ~~~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
++. +++++++||+.+++... ..+.. ....+....++++++..+++++++|+|++++.++..+
T Consensus 142 ~~~--~~~~~~lrp~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~ 206 (321)
T 3c1o_A 142 EAA--ALPYTYVSANCFGAYFV-------------NYLLHPSPHPNRNDDIVIYGTGETKFVLNYEEDIAKYTIKVACDP 206 (321)
T ss_dssp HHH--TCCBEEEECCEEHHHHH-------------HHHHCCCSSCCTTSCEEEETTSCCEEEEECHHHHHHHHHHHHHCG
T ss_pred HHc--CCCeEEEEeceeccccc-------------cccccccccccccCceEEecCCCcceeEeeHHHHHHHHHHHHhCc
Confidence 875 69999999999887421 01111 0123334455667788999999999999999999876
Q ss_pred hh
Q psy17528 362 LF 363 (366)
Q Consensus 362 ~~ 363 (366)
..
T Consensus 207 ~~ 208 (321)
T 3c1o_A 207 RC 208 (321)
T ss_dssp GG
T ss_pred cc
Confidence 53
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.5e-18 Score=157.96 Aligned_cols=195 Identities=15% Similarity=0.183 Sum_probs=143.3
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCcc-------EEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIR-------KIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIG 120 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~-------~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (366)
+++|+||||+|+||.+++++|++.| + +|++++|+... .+.+.+. +.
T Consensus 2 ~k~vlITGasggiG~~la~~l~~~G---~~~~~~~~~V~~~~r~~~~---~~~~~~~--------~~------------- 54 (244)
T 2bd0_A 2 KHILLITGAGKGIGRAIALEFARAA---RHHPDFEPVLVLSSRTAAD---LEKISLE--------CR------------- 54 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHT---TTCTTCCEEEEEEESCHHH---HHHHHHH--------HH-------------
T ss_pred CCEEEEECCCChHHHHHHHHHHHhc---CcccccceEEEEEeCCHHH---HHHHHHH--------HH-------------
Confidence 5789999999999999999999998 5 89999996421 1111111 10
Q ss_pred cccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------h
Q psy17528 121 ITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------F 186 (366)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~ 186 (366)
....++.++.+|+.+.+ .+.++++ ++|+||||||... .
T Consensus 55 ----------------------~~~~~~~~~~~D~~~~~------~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~ 106 (244)
T 2bd0_A 55 ----------------------AEGALTDTITADISDMA------DVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLT 106 (244)
T ss_dssp ----------------------TTTCEEEEEECCTTSHH------HHHHHHHHHHHHTSCCSEEEECCCCCCCCCGGGCC
T ss_pred ----------------------ccCCeeeEEEecCCCHH------HHHHHHHHHHHhCCCCCEEEEcCCcCCcCccccCC
Confidence 11357889999999876 6666654 6899999999753 2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhh
Q psy17528 187 DEHIRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNE 263 (366)
Q Consensus 187 ~~~~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 263 (366)
...++..+++|+.++..+++.+.+. .+.++||++||..++....
T Consensus 107 ~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~--------------------------------- 153 (244)
T 2bd0_A 107 EEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKAFR--------------------------------- 153 (244)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT---------------------------------
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEEecchhcCCCC---------------------------------
Confidence 3456788999999999988876431 2567999999987653211
Q ss_pred cccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCC
Q psy17528 264 HIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDP 338 (366)
Q Consensus 264 ~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~ 338 (366)
....|+.+|...|.+++... ++++++++|||.|+++....... .
T Consensus 154 -----~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~-------------------------~- 202 (244)
T 2bd0_A 154 -----HSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKVDD-------------------------E- 202 (244)
T ss_dssp -----TCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCCCS-------------------------T-
T ss_pred -----CCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEECCCccchhhhhccc-------------------------c-
Confidence 11689999999999886543 68999999999999975432100 0
Q ss_pred CcccCcccHHHHHHHHHHHHHhhh
Q psy17528 339 NISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 339 ~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
. ...+++.+|+|++++.++..+.
T Consensus 203 ~-~~~~~~~~dva~~~~~l~~~~~ 225 (244)
T 2bd0_A 203 M-QALMMMPEDIAAPVVQAYLQPS 225 (244)
T ss_dssp T-GGGSBCHHHHHHHHHHHHTSCT
T ss_pred c-cccCCCHHHHHHHHHHHHhCCc
Confidence 0 1268999999999999987653
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.80 E-value=5.2e-18 Score=160.01 Aligned_cols=222 Identities=17% Similarity=0.082 Sum_probs=150.0
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcC-------HHHHHHHHhhhhhhhhhhhcCCCCCCc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTS-------ITQRVYNYFNDAVFDRMRLECPNYADK 116 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~~~ 116 (366)
..+++|+++||||+|+||.+++++|++.| .+|++++|+..... ..+++.+... .
T Consensus 11 ~~l~gk~~lVTGas~gIG~a~a~~la~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-----~----------- 71 (280)
T 3pgx_A 11 GSLQGRVAFITGAARGQGRSHAVRLAAEG---ADIIACDICAPVSASVTYAPASPEDLDETAR-----L----------- 71 (280)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEECCSCCCTTCCSCCCCHHHHHHHHH-----H-----------
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeccccccccccccccCHHHHHHHHH-----H-----------
Confidence 45778999999999999999999999999 89999998532110 1122221111 0
Q ss_pred cccccccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC----
Q psy17528 117 VDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR---- 185 (366)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~---- 185 (366)
......++.++.+|+++.+ .+.++++ ++|++|||||...
T Consensus 72 ------------------------~~~~~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~ 121 (280)
T 3pgx_A 72 ------------------------VEDQGRKALTRVLDVRDDA------ALRELVADGMEQFGRLDVVVANAGVLSWGRV 121 (280)
T ss_dssp ------------------------HHTTTCCEEEEECCTTCHH------HHHHHHHHHHHHHCCCCEEEECCCCCCCBCG
T ss_pred ------------------------HHhcCCeEEEEEcCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCc
Confidence 1112357889999999986 6666654 7899999999753
Q ss_pred ---hhhhHHHHHHHHHHHHHHHHHHHHh----cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHH
Q psy17528 186 ---FDEHIRTAYNINVKGTQTILALAKR----MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEI 258 (366)
Q Consensus 186 ---~~~~~~~~~~~nv~~~~~ll~~a~~----~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~ 258 (366)
....++..+++|+.++..+++.+.+ .+...+||++||..++....
T Consensus 122 ~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------------------------- 173 (280)
T 3pgx_A 122 WELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGLKATP---------------------------- 173 (280)
T ss_dssp GGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCT----------------------------
T ss_pred ccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchhhccCCC----------------------------
Confidence 2345677899999999998887643 22356899999987652211
Q ss_pred HhhhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHH-hcCcce
Q psy17528 259 ALLNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGA-GTGLIR 332 (366)
Q Consensus 259 ~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~ 332 (366)
....|+.+|...+.+.+.+. +|+++++++||.|+++...+. ......... ......
T Consensus 174 ----------~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~--------~~~~~~~~~~~~~~~~ 235 (280)
T 3pgx_A 174 ----------GNGHYSASKHGLTALTNTLAIELGEYGIRVNSIHPYSVETPMIEPE--------AMMEIFARHPSFVHSF 235 (280)
T ss_dssp ----------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCHH--------HHHHHHHHCGGGGGGS
T ss_pred ----------CchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccCcccchh--------hhhhhhhcCchhhhhh
Confidence 11689999999999887765 689999999999998754310 001111100 000000
Q ss_pred eecCCCCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 333 VVQTDPNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 333 ~l~~~~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
... ..... .+++++|+|++++.++....
T Consensus 236 ~~~-~~~~~-r~~~p~dvA~~v~~L~s~~~ 263 (280)
T 3pgx_A 236 PPM-PVQPN-GFMTADEVADVVAWLAGDGS 263 (280)
T ss_dssp CCB-TTBCS-SCBCHHHHHHHHHHHHSGGG
T ss_pred hhc-ccCCC-CCCCHHHHHHHHHHHhCccc
Confidence 011 11122 48999999999999886654
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.80 E-value=3.6e-18 Score=161.06 Aligned_cols=224 Identities=12% Similarity=0.047 Sum_probs=150.8
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCc------CHHHHHHHHhhhhhhhhhhhcCCCCCCccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGST------SITQRVYNYFNDAVFDRMRLECPNYADKVD 118 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 118 (366)
.+++|++|||||+|+||.+++++|++.| .+|++++|+.... ...+++.+... .+.
T Consensus 7 ~l~~k~~lVTGas~gIG~a~a~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-----~~~----------- 67 (281)
T 3s55_A 7 DFEGKTALITGGARGMGRSHAVALAEAG---ADIAICDRCENSDVVGYPLATADDLAETVA-----LVE----------- 67 (281)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCSCCTTCSSCCCCHHHHHHHHH-----HHH-----------
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCC---CeEEEEeCCccccccccccccHHHHHHHHH-----HHH-----------
Confidence 4678999999999999999999999999 8899999974321 01122221111 011
Q ss_pred cccccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC------
Q psy17528 119 IGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR------ 185 (366)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~------ 185 (366)
....++.++.+|+++.+ .+..+++ ++|++|||||...
T Consensus 68 ------------------------~~~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~ 117 (281)
T 3s55_A 68 ------------------------KTGRRCISAKVDVKDRA------ALESFVAEAEDTLGGIDIAITNAGISTIALLPE 117 (281)
T ss_dssp ------------------------HTTCCEEEEECCTTCHH------HHHHHHHHHHHHHTCCCEEEECCCCCCCCCTTC
T ss_pred ------------------------hcCCeEEEEeCCCCCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCCccc
Confidence 12357889999999986 6666654 7899999999753
Q ss_pred -hhhhHHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhh
Q psy17528 186 -FDEHIRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALL 261 (366)
Q Consensus 186 -~~~~~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~ 261 (366)
....++..+++|+.++..+++++.+. .+..++|++||..++....
T Consensus 118 ~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------------------------- 166 (281)
T 3s55_A 118 VESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHSANF------------------------------- 166 (281)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCCT-------------------------------
T ss_pred CCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhcCCCC-------------------------------
Confidence 23466788999999999998875331 2456999999987652211
Q ss_pred hhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCc---cccccc-hHHHHHHHHhcCcce
Q psy17528 262 NEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPL---WIKGFN-GVMALALGAGTGLIR 332 (366)
Q Consensus 262 ~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~---~~~~~~-~~~~~~~~~~~g~~~ 332 (366)
....|+.+|...+.+.+.+. +|+++++++||.|+++....... +...+. ....-.....
T Consensus 167 -------~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 234 (281)
T 3s55_A 167 -------AQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFGTMRPDLEKPTLKDVESVF----- 234 (281)
T ss_dssp -------TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSTTTSSHHHHHC-------CCHHHHHHHH-----
T ss_pred -------CCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccccchhhhccccccccccchhHHHHHH-----
Confidence 11689999999999887765 58999999999999986532100 000000 0000000000
Q ss_pred eecCCCCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 333 VVQTDPNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 333 ~l~~~~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
.........+++.+|+|++++.++....
T Consensus 235 --~~~~~~~~~~~~p~dvA~~v~~L~s~~~ 262 (281)
T 3s55_A 235 --ASLHLQYAPFLKPEEVTRAVLFLVDEAS 262 (281)
T ss_dssp --HHHCSSSCSCBCHHHHHHHHHHHHSGGG
T ss_pred --HhhhccCcCCCCHHHHHHHHHHHcCCcc
Confidence 0011222678999999999999987654
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.80 E-value=7.2e-19 Score=163.92 Aligned_cols=215 Identities=13% Similarity=0.110 Sum_probs=147.1
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++|+||||+|+||++++++|++.| ++|++++|.... ..+.+.+. +..
T Consensus 19 ~~~k~vlItGasggiG~~la~~l~~~G---~~v~~~~r~~~~--~~~~~~~~--------l~~----------------- 68 (274)
T 1ja9_A 19 LAGKVALTTGAGRGIGRGIAIELGRRG---ASVVVNYGSSSK--AAEEVVAE--------LKK----------------- 68 (274)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESSCHH--HHHHHHHH--------HHH-----------------
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEcCCchH--HHHHHHHH--------HHh-----------------
Confidence 568999999999999999999999998 889999984211 11111111 111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
...++.++.+|+.+.+ .+..+++ ++|+|||+||... ....++
T Consensus 69 ------------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~ 124 (274)
T 1ja9_A 69 ------------------LGAQGVAIQADISKPS------EVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFD 124 (274)
T ss_dssp ------------------TTCCEEEEECCTTSHH------HHHHHHHHHHHHHSCEEEEECCCCCCCCCCGGGCCHHHHH
T ss_pred ------------------cCCcEEEEEecCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCcccccCCHHHHH
Confidence 1256889999999876 6666665 7899999999653 123557
Q ss_pred HHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCccee-cCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCC
Q psy17528 192 TAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCN-CDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGK 269 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~-~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (366)
..+++|+.++..+++++.+. ...++||++||..++ .... .
T Consensus 125 ~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~~~--------------------------------------~ 166 (274)
T 1ja9_A 125 KVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMTGIP--------------------------------------N 166 (274)
T ss_dssp HHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCCSCC--------------------------------------S
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCEEEEEcChHhccCCCC--------------------------------------C
Confidence 78999999999999987653 111689999998765 2210 0
Q ss_pred CchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCC-----CCccccccchHHHHHHHHhcCcceeecCCCC
Q psy17528 270 PNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEP-----MPLWIKGFNGVMALALGAGTGLIRVVQTDPN 339 (366)
Q Consensus 270 ~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~ 339 (366)
...|+.+|...|.+++.+. ++++++++|||.++++.... .+....... ......... .+.
T Consensus 167 ~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~ 236 (274)
T 1ja9_A 167 HALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMP-QEKIDEGLA---------NMN 236 (274)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCC-HHHHHHHHH---------HTS
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccchhcccccccccccccCc-hHHHHHHHH---------hcC
Confidence 1679999999999988765 58999999999998763210 000000000 011111111 122
Q ss_pred cccCcccHHHHHHHHHHHHHhhh
Q psy17528 340 ISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 340 ~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
...++++++|+|++++.++..+.
T Consensus 237 ~~~~~~~~~dva~~i~~l~~~~~ 259 (274)
T 1ja9_A 237 PLKRIGYPADIGRAVSALCQEES 259 (274)
T ss_dssp TTSSCBCHHHHHHHHHHHHSGGG
T ss_pred CCCCccCHHHHHHHHHHHhCccc
Confidence 34578999999999999987653
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-18 Score=160.06 Aligned_cols=205 Identities=14% Similarity=0.120 Sum_probs=143.9
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++|+||||+|+||.+++++|++.| ++|++++|+... .+.+.+.+. ..
T Consensus 5 ~~~~~vlVtGasggiG~~la~~l~~~G---~~V~~~~r~~~~---~~~~~~~~~--------~~---------------- 54 (248)
T 2pnf_A 5 LQGKVSLVTGSTRGIGRAIAEKLASAG---STVIITGTSGER---AKAVAEEIA--------NK---------------- 54 (248)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSHHH---HHHHHHHHH--------HH----------------
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCChHH---HHHHHHHHH--------hh----------------
Confidence 568999999999999999999999998 899999997421 111111110 00
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
...++.++.+|+.+.+ .+..+++ ++|+|||+||... ....++
T Consensus 55 ------------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~ 110 (248)
T 2pnf_A 55 ------------------YGVKAHGVEMNLLSEE------SINKAFEEIYNLVDGIDILVNNAGITRDKLFLRMSLLDWE 110 (248)
T ss_dssp ------------------HCCCEEEEECCTTCHH------HHHHHHHHHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHH
T ss_pred ------------------cCCceEEEEccCCCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHH
Confidence 1246888999999876 6766665 7899999999753 124567
Q ss_pred HHHHHHHHHHHHHHHHH----HhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 192 TAYNINVKGTQTILALA----KRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a----~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
..+++|+.++..+++.+ .+. +.++||++||..++....
T Consensus 111 ~~~~~N~~~~~~l~~~~~~~~~~~-~~~~iv~~sS~~~~~~~~------------------------------------- 152 (248)
T 2pnf_A 111 EVLKVNLTGTFLVTQNSLRKMIKQ-RWGRIVNISSVVGFTGNV------------------------------------- 152 (248)
T ss_dssp HHHHHHTHHHHHHHHHHCHHHHHH-TCEEEEEECCHHHHHCCT-------------------------------------
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhc-CCcEEEEEccHHhcCCCC-------------------------------------
Confidence 78999999997766654 333 567999999975442210
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
....|+.+|...|.+.+.+. .+++++++||+.++++..... . ..+....... ....
T Consensus 153 -~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~-------~--~~~~~~~~~~---------~~~~ 213 (248)
T 2pnf_A 153 -GQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMTAVL-------S--EEIKQKYKEQ---------IPLG 213 (248)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGS-------C--HHHHHHHHHT---------CTTS
T ss_pred -CCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeceecCchhhhc-------c--HHHHHHHHhc---------CCCC
Confidence 01679999999999887654 589999999999998753211 1 1111111111 1124
Q ss_pred CcccHHHHHHHHHHHHHhh
Q psy17528 343 DVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~ 361 (366)
.+++++|+|++++.++...
T Consensus 214 ~~~~~~dva~~~~~l~~~~ 232 (248)
T 2pnf_A 214 RFGSPEEVANVVLFLCSEL 232 (248)
T ss_dssp SCBCHHHHHHHHHHHHSGG
T ss_pred CccCHHHHHHHHHHHhCch
Confidence 5889999999999988754
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.2e-19 Score=170.28 Aligned_cols=195 Identities=14% Similarity=0.109 Sum_probs=138.8
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
++|+||||||+||++++++|++.| ++|++++|+.+.. .+.+.++ .
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g---~~V~~l~R~~~~~--~~~~~~l---------~--------------------- 56 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLG---HPTYVFTRPNSSK--TTLLDEF---------Q--------------------- 56 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTT---CCEEEEECTTCSC--HHHHHHH---------H---------------------
T ss_pred CeEEEECCCchHHHHHHHHHHHCC---CcEEEEECCCCch--hhHHHHh---------h---------------------
Confidence 589999999999999999999998 7899999986421 1111110 0
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALA 208 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll~~a 208 (366)
..++.++.+|+.|.+ .+..+++++|+|||+++... +.++.++++++
T Consensus 57 ----------------~~~v~~v~~Dl~d~~------~l~~a~~~~d~vi~~a~~~~------------~~~~~~l~~aa 102 (318)
T 2r6j_A 57 ----------------SLGAIIVKGELDEHE------KLVELMKKVDVVISALAFPQ------------ILDQFKILEAI 102 (318)
T ss_dssp ----------------HTTCEEEECCTTCHH------HHHHHHTTCSEEEECCCGGG------------STTHHHHHHHH
T ss_pred ----------------cCCCEEEEecCCCHH------HHHHHHcCCCEEEECCchhh------------hHHHHHHHHHH
Confidence 146789999999977 89999999999999998632 44567899999
Q ss_pred HhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHHhc
Q psy17528 209 KRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVG 288 (366)
Q Consensus 209 ~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~ 288 (366)
++.+++++||+ |+ +.. . .+|. .+..+. ...| .+|..+|+++++.
T Consensus 103 ~~~g~v~~~v~-S~-~g~--~--~~~~---~~~~p~-------------------------~~~y-~sK~~~e~~~~~~- 146 (318)
T 2r6j_A 103 KVAGNIKRFLP-SD-FGV--E--EDRI---NALPPF-------------------------EALI-ERKRMIRRAIEEA- 146 (318)
T ss_dssp HHHCCCCEEEC-SC-CSS--C--TTTC---CCCHHH-------------------------HHHH-HHHHHHHHHHHHT-
T ss_pred HhcCCCCEEEe-ec-ccc--C--cccc---cCCCCc-------------------------chhH-HHHHHHHHHHHhc-
Confidence 88733889984 33 221 1 1111 010010 0468 9999999999875
Q ss_pred CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 289 HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 289 ~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
+++++++||+.+++... ..++.....+....++++++..++|++++|+|++++.++..+.
T Consensus 147 -~~~~~~lr~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~ 206 (318)
T 2r6j_A 147 -NIPYTYVSANCFASYFI-------------NYLLRPYDPKDEITVYGTGEAKFAMNYEQDIGLYTIKVATDPR 206 (318)
T ss_dssp -TCCBEEEECCEEHHHHH-------------HHHHCTTCCCSEEEEETTSCCEEEEECHHHHHHHHHHHTTCGG
T ss_pred -CCCeEEEEcceehhhhh-------------hhhccccCCCCceEEecCCCceeeEeeHHHHHHHHHHHhcCcc
Confidence 79999999998775310 1111111234445566778889999999999999999998764
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.5e-18 Score=157.50 Aligned_cols=205 Identities=13% Similarity=0.131 Sum_probs=147.7
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
++|+++||||+|+||.+++++|++.| .+|++++|.... ..+.+.+.+. .
T Consensus 3 ~~k~~lVTGas~gIG~~ia~~l~~~G---~~V~~~~~~~~~--~~~~~~~~~~--------~------------------ 51 (246)
T 3osu_A 3 MTKSALVTGASRGIGRSIALQLAEEG---YNVAVNYAGSKE--KAEAVVEEIK--------A------------------ 51 (246)
T ss_dssp CSCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSCHH--HHHHHHHHHH--------H------------------
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCCHH--HHHHHHHHHH--------h------------------
Confidence 47899999999999999999999999 889888885421 1122222111 1
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIRT 192 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~~ 192 (366)
...++.++.+|+++.+ ++..+++ ++|++|||||... ....++.
T Consensus 52 -----------------~~~~~~~~~~Dv~d~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~ 108 (246)
T 3osu_A 52 -----------------KGVDSFAIQANVADAD------EVKAMIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDD 108 (246)
T ss_dssp -----------------TTSCEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHH
T ss_pred -----------------cCCcEEEEEccCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHH
Confidence 1357889999999976 6666664 7899999999753 2345678
Q ss_pred HHHHHHHHHHHHHHHH----HhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 193 AYNINVKGTQTILALA----KRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 193 ~~~~nv~~~~~ll~~a----~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
.+++|+.++..+++.+ .+. +..+||++||..++....
T Consensus 109 ~~~vN~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~~~~-------------------------------------- 149 (246)
T 3osu_A 109 VIDTNLKGVFNCIQKATPQMLRQ-RSGAIINLSSVVGAVGNP-------------------------------------- 149 (246)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHHHHHCCT--------------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEEcchhhcCCCC--------------------------------------
Confidence 9999999999998887 333 557999999986542211
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
....|+.+|...+.+.+.+. +++++++++||.|.++...... ..+......+ .....
T Consensus 150 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~---------~~~~~~~~~~---------~p~~r 211 (246)
T 3osu_A 150 GQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDALS---------DELKEQMLTQ---------IPLAR 211 (246)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCCSCSC---------HHHHHHHHTT---------CTTCS
T ss_pred CChHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECCCcCCcccccC---------HHHHHHHHhc---------CCCCC
Confidence 12689999998888887655 6899999999999987643211 1122222222 22345
Q ss_pred cccHHHHHHHHHHHHHhhh
Q psy17528 344 VVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~~~ 362 (366)
+.+.+|+|++++.++....
T Consensus 212 ~~~~~dva~~v~~l~s~~~ 230 (246)
T 3osu_A 212 FGQDTDIANTVAFLASDKA 230 (246)
T ss_dssp CBCHHHHHHHHHHHTSGGG
T ss_pred CcCHHHHHHHHHHHhCccc
Confidence 7889999999999887654
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.80 E-value=4.8e-18 Score=159.61 Aligned_cols=217 Identities=14% Similarity=0.140 Sum_probs=143.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||.+++++|++.| ++|++++|+... .+.+.+. +..
T Consensus 4 ~~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~---~~~~~~~--------~~~----------------- 52 (278)
T 1spx_A 4 FAEKVAIITGSSNGIGRATAVLFAREG---AKVTITGRHAER---LEETRQQ--------ILA----------------- 52 (278)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHH--------HHH-----------------
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHH--------HHh-----------------
Confidence 568999999999999999999999998 899999997421 1111111 100
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-----------hh
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-----------FD 187 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-----------~~ 187 (366)
......++.++.+|+++.+ .+..+++ ++|+||||||... ..
T Consensus 53 ---------------~~~~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~ 111 (278)
T 1spx_A 53 ---------------AGVSEQNVNSVVADVTTDA------GQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSI 111 (278)
T ss_dssp ---------------TTCCGGGEEEEECCTTSHH------HHHHHHHHHHHHHSCCCEEEECCC-------------CCH
T ss_pred ---------------cccCCCceeEEecccCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCcccccccccCCH
Confidence 0111246889999999976 6666665 7999999999743 23
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcce-ecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhh
Q psy17528 188 EHIRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYC-NCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNE 263 (366)
Q Consensus 188 ~~~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~-~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 263 (366)
..++..+++|+.++..+++.+.+. .+ .++|++||..+ +....
T Consensus 112 ~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-g~iv~isS~~~~~~~~~--------------------------------- 157 (278)
T 1spx_A 112 ESYDATLNLNLRSVIALTKKAVPHLSSTK-GEIVNISSIASGLHATP--------------------------------- 157 (278)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCTTSSSSCCT---------------------------------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEecccccccCCC---------------------------------
Confidence 456778999999999988876542 13 79999999875 42210
Q ss_pred cccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCC
Q psy17528 264 HIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDP 338 (366)
Q Consensus 264 ~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~ 338 (366)
....|+.+|...+.+.+... +|+++++++||.|+++......................... .
T Consensus 158 -----~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~----~---- 224 (278)
T 1spx_A 158 -----DFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKEC----V---- 224 (278)
T ss_dssp -----TSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHHHHH----C----
T ss_pred -----CccHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccCccccccccCchhhhhhhHHHHHHHhc----C----
Confidence 01679999999999887754 68999999999999875421100000000000001111110 0
Q ss_pred CcccCcccHHHHHHHHHHHHHhhh
Q psy17528 339 NISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 339 ~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
....+++.+|+|++++.++..+.
T Consensus 225 -p~~~~~~~~dvA~~v~~l~s~~~ 247 (278)
T 1spx_A 225 -PAGVMGQPQDIAEVIAFLADRKT 247 (278)
T ss_dssp -TTSSCBCHHHHHHHHHHHHCHHH
T ss_pred -CCcCCCCHHHHHHHHHHHcCccc
Confidence 12358899999999999887654
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3e-18 Score=157.40 Aligned_cols=203 Identities=18% Similarity=0.267 Sum_probs=144.5
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++|+||||+|+||.+++++|++.| .+|++++|+.. ++.+... .
T Consensus 5 l~~k~vlITGasggiG~~~a~~l~~~G---~~V~~~~r~~~------~~~~~~~---------~---------------- 50 (244)
T 3d3w_A 5 LAGRRVLVTGAGKGIGRGTVQALHATG---ARVVAVSRTQA------DLDSLVR---------E---------------- 50 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHHHH---------H----------------
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHHHH---------H----------------
Confidence 568999999999999999999999998 78999999742 1111110 0
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh---CcCEEEEcCcccCh-------hhhHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS---QTTIIFHIAATVRF-------DEHIRTAYN 195 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~---~~d~Vih~a~~~~~-------~~~~~~~~~ 195 (366)
. ..+.++.+|+.+.+ .+..+++ ++|+|||+||.... ...++..++
T Consensus 51 ---------------~----~~~~~~~~D~~~~~------~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~ 105 (244)
T 3d3w_A 51 ---------------C----PGIEPVCVDLGDWE------ATERALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFE 105 (244)
T ss_dssp ---------------S----TTCEEEECCTTCHH------HHHHHHTTCCCCCEEEECCCCCCCBCGGGCCHHHHHHHHH
T ss_pred ---------------c----CCCCEEEEeCCCHH------HHHHHHHHcCCCCEEEECCccCCCcchhhCCHHHHHHHHH
Confidence 1 23567799999876 7777775 58999999996431 245677899
Q ss_pred HHHHHHHHHHHHHHhc---CC-CcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCc
Q psy17528 196 INVKGTQTILALAKRM---KG-LKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPN 271 (366)
Q Consensus 196 ~nv~~~~~ll~~a~~~---~~-~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (366)
+|+.++..+++++.+. .+ .++||++||..++.... + ..
T Consensus 106 ~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~---------~-----------------------------~~ 147 (244)
T 3d3w_A 106 VNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVT---------N-----------------------------HS 147 (244)
T ss_dssp HHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCT---------T-----------------------------BH
T ss_pred HHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhccCCC---------C-----------------------------Cc
Confidence 9999988888876542 13 57999999986653211 1 16
Q ss_pred hHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCccc
Q psy17528 272 SYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVP 346 (366)
Q Consensus 272 ~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~ 346 (366)
.|+.+|...|.+++.+. ++++++++||+.|+++..... +.. . ........+ .....+++
T Consensus 148 ~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~--~~~--~---~~~~~~~~~---------~~~~~~~~ 211 (244)
T 3d3w_A 148 VYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQAT--WSD--P---HKAKTMLNR---------IPLGKFAE 211 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTTTHHHH--SCS--T---THHHHHHHT---------CTTCSCBC
T ss_pred hHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccccccchhhh--ccC--h---HHHHHHHhh---------CCCCCCcC
Confidence 89999999999987765 589999999999998753210 000 0 011111111 12347899
Q ss_pred HHHHHHHHHHHHHhh
Q psy17528 347 GDRVINAMAALAWYF 361 (366)
Q Consensus 347 vdDva~ai~~~~~~~ 361 (366)
++|+|++++.++...
T Consensus 212 ~~dva~~~~~l~~~~ 226 (244)
T 3d3w_A 212 VEHVVNAILFLLSDR 226 (244)
T ss_dssp HHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHHcCcc
Confidence 999999999998754
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.7e-18 Score=158.92 Aligned_cols=206 Identities=12% Similarity=0.120 Sum_probs=142.7
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|+++||||+|+||.+++++|++.| .+|++++|+...... .
T Consensus 5 l~~k~~lVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~~~~---~------------------------------- 47 (257)
T 3tpc_A 5 LKSRVFIVTGASSGLGAAVTRMLAQEG---ATVLGLDLKPPAGEE---P------------------------------- 47 (257)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESSCC---------------------------------------
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCChHHHHH---H-------------------------------
Confidence 568999999999999999999999999 899999998653211 0
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-----------h
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-----------D 187 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-----------~ 187 (366)
......++.++.+|+++.+ .+..+++ ++|++|||||.... .
T Consensus 48 ---------------~~~~~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~ 106 (257)
T 3tpc_A 48 ---------------AAELGAAVRFRNADVTNEA------DATAALAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHAL 106 (257)
T ss_dssp ----------------------CEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCSEETTEECCH
T ss_pred ---------------HHHhCCceEEEEccCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCccccccccCCH
Confidence 0111346788999999976 6666664 78999999997521 3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhc---------CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHH
Q psy17528 188 EHIRTAYNINVKGTQTILALAKRM---------KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEI 258 (366)
Q Consensus 188 ~~~~~~~~~nv~~~~~ll~~a~~~---------~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~ 258 (366)
..++..+++|+.++..+++++.+. ++..++|++||..++....
T Consensus 107 ~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~~~~~---------------------------- 158 (257)
T 3tpc_A 107 DSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFDGQI---------------------------- 158 (257)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHCCT----------------------------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhccCCC----------------------------
Confidence 456788999999999999887652 1346899999986652211
Q ss_pred HhhhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCccee
Q psy17528 259 ALLNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRV 333 (366)
Q Consensus 259 ~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 333 (366)
....|+.+|...+.+.+.+. +|+++++++||.|.++.....+. .......
T Consensus 159 ----------~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~---------~~~~~~~------ 213 (257)
T 3tpc_A 159 ----------GQAAYAASKGGVAALTLPAARELARFGIRVVTIAPGIFDTPMMAGMPQ---------DVQDALA------ 213 (257)
T ss_dssp ----------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSCC-----------------------------
T ss_pred ----------CCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEeCCCCChhhccCCH---------HHHHHHH------
Confidence 12689999999998876655 68999999999999875432110 0000011
Q ss_pred ecCCCCcc-cCcccHHHHHHHHHHHHHhhhhcC
Q psy17528 334 VQTDPNIS-MDVVPGDRVINAMAALAWYFLFSC 365 (366)
Q Consensus 334 l~~~~~~~-~~~v~vdDva~ai~~~~~~~~~~~ 365 (366)
..... ..+...+|+|++++.++.....+|
T Consensus 214 ---~~~p~~~r~~~~~dva~~v~~l~s~~~itG 243 (257)
T 3tpc_A 214 ---ASVPFPPRLGRAEEYAALVKHICENTMLNG 243 (257)
T ss_dssp ---CCSSSSCSCBCHHHHHHHHHHHHHCTTCCS
T ss_pred ---hcCCCCCCCCCHHHHHHHHHHHcccCCcCC
Confidence 11112 458899999999999987643333
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.3e-18 Score=158.68 Aligned_cols=209 Identities=11% Similarity=0.080 Sum_probs=143.8
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++++|+||||+|+||++++++|++.| ++|++++|+.. ...+.+.+. +..
T Consensus 4 ~l~~k~vlITGasggiG~~~a~~l~~~G---~~V~~~~r~~~--~~~~~~~~~--------l~~---------------- 54 (261)
T 1gee_A 4 DLEGKVVVITGSSTGLGKSMAIRFATEK---AKVVVNYRSKE--DEANSVLEE--------IKK---------------- 54 (261)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSCH--HHHHHHHHH--------HHH----------------
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEcCCCh--HHHHHHHHH--------HHh----------------
Confidence 3668999999999999999999999998 88999999321 111111111 111
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHI 190 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~ 190 (366)
...++.++.+|+++.+ .+.++++ ++|+||||||.... ...+
T Consensus 55 -------------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~ 109 (261)
T 1gee_A 55 -------------------VGGEAIAVKGDVTVES------DVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDW 109 (261)
T ss_dssp -------------------TTCEEEEEECCTTSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHH
T ss_pred -------------------cCCceEEEECCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHH
Confidence 1246788999999876 6666654 78999999997532 2456
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---CC-CcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 191 RTAYNINVKGTQTILALAKRM---KG-LKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~---~~-~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
+..+++|+.++..+++.+.+. .+ ..+||++||...+... ++
T Consensus 110 ~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~~---------~~-------------------------- 154 (261)
T 1gee_A 110 NKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPW---------PL-------------------------- 154 (261)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCC---------TT--------------------------
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhcCCC---------CC--------------------------
Confidence 778999999998887765432 13 5799999997654211 01
Q ss_pred CCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcc
Q psy17528 267 GGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNIS 341 (366)
Q Consensus 267 ~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~ 341 (366)
...|+.+|...+.+.+.+. .+++++++|||.|+++.... .............. ...
T Consensus 155 ---~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-------~~~~~~~~~~~~~~---------~~~ 215 (261)
T 1gee_A 155 ---FVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAE-------KFADPEQRADVESM---------IPM 215 (261)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHH-------HHHSHHHHHHHHTT---------CTT
T ss_pred ---ccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCcCCchhhh-------cccChhHHHHHHhc---------CCC
Confidence 1689999998888877654 58999999999999874310 00001111111111 112
Q ss_pred cCcccHHHHHHHHHHHHHhh
Q psy17528 342 MDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 342 ~~~v~vdDva~ai~~~~~~~ 361 (366)
..+++.+|+|++++.++...
T Consensus 216 ~~~~~~~dva~~~~~l~~~~ 235 (261)
T 1gee_A 216 GYIGEPEEIAAVAAWLASSE 235 (261)
T ss_dssp SSCBCHHHHHHHHHHHHSGG
T ss_pred CCCcCHHHHHHHHHHHhCcc
Confidence 45889999999999988654
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.79 E-value=3.7e-18 Score=160.59 Aligned_cols=205 Identities=19% Similarity=0.150 Sum_probs=149.1
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
..+++|+++||||+|+||.+++++|++.| .+|++++|+.... +...+.
T Consensus 7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~~---~~~~~~-------------------------- 54 (271)
T 3tzq_B 7 AELENKVAIITGACGGIGLETSRVLARAG---ARVVLADLPETDL---AGAAAS-------------------------- 54 (271)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECTTSCH---HHHHHH--------------------------
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEcCCHHHH---HHHHHH--------------------------
Confidence 34678999999999999999999999999 8999999986532 111110
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh---------h
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF---------D 187 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~---------~ 187 (366)
...++.++.+|+++.+ .+.++++ ++|++|||||.... .
T Consensus 55 --------------------~~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~ 108 (271)
T 3tzq_B 55 --------------------VGRGAVHHVVDLTNEV------SVRALIDFTIDTFGRLDIVDNNAAHSDPADMLVTQMTV 108 (271)
T ss_dssp --------------------HCTTCEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCTTCCCGGGCCH
T ss_pred --------------------hCCCeEEEECCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCccccCCH
Confidence 0246788999999976 6666665 78999999997521 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHH----HhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhh
Q psy17528 188 EHIRTAYNINVKGTQTILALA----KRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNE 263 (366)
Q Consensus 188 ~~~~~~~~~nv~~~~~ll~~a----~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 263 (366)
..++..+++|+.++..+.+.+ .+. +..+||++||..++....
T Consensus 109 ~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~~~~~~~--------------------------------- 154 (271)
T 3tzq_B 109 DVWDDTFTVNARGTMLMCKYAIPRLISA-GGGAIVNISSATAHAAYD--------------------------------- 154 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEECCGGGTSBCS---------------------------------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEECCHHHcCCCC---------------------------------
Confidence 456788999999999998887 333 567999999987652211
Q ss_pred cccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCC
Q psy17528 264 HIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDP 338 (366)
Q Consensus 264 ~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~ 338 (366)
....|+.+|...+.+.+.+. +|+++++++||.|+++..... .. ..........
T Consensus 155 -----~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~------~~--~~~~~~~~~~--------- 212 (271)
T 3tzq_B 155 -----MSTAYACTKAAIETLTRYVATQYGRHGVRCNAIAPGLVRTPRLEVG------LP--QPIVDIFATH--------- 212 (271)
T ss_dssp -----SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTC---------C--HHHHHHHHTT---------
T ss_pred -----CChHHHHHHHHHHHHHHHHHHHHhhcCEEEEEEEeCCCcCcccccc------CC--HHHHHHHHhc---------
Confidence 12689999999999887765 689999999999999865310 01 1111111111
Q ss_pred CcccCcccHHHHHHHHHHHHHhhh
Q psy17528 339 NISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 339 ~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
.....+...+|+|++++.++....
T Consensus 213 ~~~~r~~~p~dvA~~v~~L~s~~~ 236 (271)
T 3tzq_B 213 HLAGRIGEPHEIAELVCFLASDRA 236 (271)
T ss_dssp STTSSCBCHHHHHHHHHHHHSGGG
T ss_pred CCCCCCcCHHHHHHHHHHHhCccc
Confidence 122347789999999999887654
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.4e-19 Score=157.89 Aligned_cols=173 Identities=16% Similarity=0.171 Sum_probs=133.3
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
|+|+||||+|+||++++++|+ .| ++|++++|+..
T Consensus 4 M~vlVtGasg~iG~~~~~~l~-~g---~~V~~~~r~~~------------------------------------------ 37 (202)
T 3d7l_A 4 MKILLIGASGTLGSAVKERLE-KK---AEVITAGRHSG------------------------------------------ 37 (202)
T ss_dssp CEEEEETTTSHHHHHHHHHHT-TT---SEEEEEESSSS------------------------------------------
T ss_pred cEEEEEcCCcHHHHHHHHHHH-CC---CeEEEEecCcc------------------------------------------
Confidence 479999999999999999999 88 88999998631
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhC---cCEEEEcCcccC-------hhhhHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQ---TTIIFHIAATVR-------FDEHIRTAYNINV 198 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~---~d~Vih~a~~~~-------~~~~~~~~~~~nv 198 (366)
++.+|+.+.+ .+.+++++ +|+|||+||... ....+...+++|+
T Consensus 38 ---------------------~~~~D~~~~~------~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~ 90 (202)
T 3d7l_A 38 ---------------------DVTVDITNID------SIKKMYEQVGKVDAIVSATGSATFSPLTELTPEKNAVTISSKL 90 (202)
T ss_dssp ---------------------SEECCTTCHH------HHHHHHHHHCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHTTT
T ss_pred ---------------------ceeeecCCHH------HHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcc
Confidence 3678999876 67777664 899999999642 1234567889999
Q ss_pred HHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHH
Q psy17528 199 KGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTK 277 (366)
Q Consensus 199 ~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK 277 (366)
.++..+++++.+. ...++||++||.+++.... ....|+.+|
T Consensus 91 ~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~~--------------------------------------~~~~Y~~sK 132 (202)
T 3d7l_A 91 GGQINLVLLGIDSLNDKGSFTLTTGIMMEDPIV--------------------------------------QGASAAMAN 132 (202)
T ss_dssp HHHHHHHHTTGGGEEEEEEEEEECCGGGTSCCT--------------------------------------TCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCEEEEEcchhhcCCCC--------------------------------------ccHHHHHHH
Confidence 9999999988764 1126899999986542210 116899999
Q ss_pred HHHHHHHHHhc----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHH
Q psy17528 278 ATAEDLVRQVG----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINA 353 (366)
Q Consensus 278 ~~~E~~l~~~~----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~a 353 (366)
...|.+++.+. ++++++++||+.++++... .. .....+++++++|+|++
T Consensus 133 ~~~~~~~~~~~~e~~~gi~v~~v~pg~v~~~~~~------------------~~---------~~~~~~~~~~~~dva~~ 185 (202)
T 3d7l_A 133 GAVTAFAKSAAIEMPRGIRINTVSPNVLEESWDK------------------LE---------PFFEGFLPVPAAKVARA 185 (202)
T ss_dssp HHHHHHHHHHTTSCSTTCEEEEEEECCBGGGHHH------------------HG---------GGSTTCCCBCHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCeEEEEEecCccCCchhh------------------hh---------hhccccCCCCHHHHHHH
Confidence 99999998876 3899999999999986320 00 11224678999999999
Q ss_pred HHHHHH
Q psy17528 354 MAALAW 359 (366)
Q Consensus 354 i~~~~~ 359 (366)
++.++.
T Consensus 186 ~~~~~~ 191 (202)
T 3d7l_A 186 FEKSVF 191 (202)
T ss_dssp HHHHHH
T ss_pred HHHhhh
Confidence 998874
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.9e-18 Score=157.05 Aligned_cols=206 Identities=16% Similarity=0.132 Sum_probs=144.2
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+++++||||+|+||.+++++|++.| ++|++++|+... .+.+.+. +
T Consensus 2 ~k~vlItGasggiG~~~a~~l~~~G---~~V~~~~r~~~~---~~~~~~~--------~--------------------- 46 (250)
T 2cfc_A 2 SRVAIVTGASSGNGLAIATRFLARG---DRVAALDLSAET---LEETART--------H--------------------- 46 (250)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHH--------H---------------------
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHH--------H---------------------
Confidence 5899999999999999999999998 789999997421 1111111 0
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh----------hhhH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF----------DEHI 190 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~----------~~~~ 190 (366)
......++.++.+|+++.+ .+.++++ ++|+||||||.... ...+
T Consensus 47 -------------~~~~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~ 107 (250)
T 2cfc_A 47 -------------WHAYADKVLRVRADVADEG------DVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQF 107 (250)
T ss_dssp -------------STTTGGGEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCTTCCSGGGSCHHHH
T ss_pred -------------HHhcCCcEEEEEecCCCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCcchhhhCCHHHH
Confidence 0111246889999999976 6666665 78999999996431 2356
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 191 RTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
+..+++|+.++..+.+.+.+. .+.+++|++||..++....
T Consensus 108 ~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~------------------------------------- 150 (250)
T 2cfc_A 108 DKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLVAFP------------------------------------- 150 (250)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT-------------------------------------
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccCCC-------------------------------------
Confidence 778899999987776655321 2567999999986653211
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
....|+.+|...|.+++.+. ++++++++||+.|+++..... .. ...+......+ ....
T Consensus 151 -~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~------~~-~~~~~~~~~~~---------~~~~ 213 (250)
T 2cfc_A 151 -GRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWR------LD-QPELRDQVLAR---------IPQK 213 (250)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTTHHH------HT-SHHHHHHHHTT---------CTTC
T ss_pred -CchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccCccccc------cC-CHHHHHHHHhc---------CCCC
Confidence 11689999999999988765 489999999999999854210 00 01122222221 1124
Q ss_pred CcccHHHHHHHHHHHHHhh
Q psy17528 343 DVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~ 361 (366)
.+++.+|+|++++.++..+
T Consensus 214 ~~~~~~dva~~~~~l~~~~ 232 (250)
T 2cfc_A 214 EIGTAAQVADAVMFLAGED 232 (250)
T ss_dssp SCBCHHHHHHHHHHHHSTT
T ss_pred CCcCHHHHHHHHHHHcCch
Confidence 5789999999999988764
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.7e-18 Score=159.46 Aligned_cols=207 Identities=12% Similarity=0.129 Sum_probs=145.3
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++|+||||+|+||.+++++|++.| ++|++++|+.... +.+.+.
T Consensus 10 ~~~k~vlVTGasggiG~~~a~~l~~~G---~~V~~~~r~~~~~---~~~~~~---------------------------- 55 (265)
T 2o23_A 10 VKGLVAVITGGASGLGLATAERLVGQG---ASAVLLDLPNSGG---EAQAKK---------------------------- 55 (265)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECTTSSH---HHHHHH----------------------------
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCcHhH---HHHHHH----------------------------
Confidence 568999999999999999999999998 8999999986432 111110
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------------
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR------------- 185 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~------------- 185 (366)
...++.++.+|+.+.+ .+.++++ ++|+||||||...
T Consensus 56 ------------------~~~~~~~~~~D~~~~~------~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~ 111 (265)
T 2o23_A 56 ------------------LGNNCVFAPADVTSEK------DVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTH 111 (265)
T ss_dssp ------------------HCTTEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCSEETTTTEEC
T ss_pred ------------------hCCceEEEEcCCCCHH------HHHHHHHHHHHHCCCCCEEEECCccCCCCccccccccCCC
Confidence 0246889999999876 6776665 7999999999742
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhc---C------CCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchH
Q psy17528 186 FDEHIRTAYNINVKGTQTILALAKRM---K------GLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDE 256 (366)
Q Consensus 186 ~~~~~~~~~~~nv~~~~~ll~~a~~~---~------~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~ 256 (366)
....+...+++|+.++..+++++.+. . +..+||++||..++....
T Consensus 112 ~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~-------------------------- 165 (265)
T 2o23_A 112 TLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQV-------------------------- 165 (265)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHCCT--------------------------
T ss_pred CHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCChhhcCCCC--------------------------
Confidence 22456788999999999999887653 1 457899999987653211
Q ss_pred HHHhhhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcc
Q psy17528 257 EIALLNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLI 331 (366)
Q Consensus 257 ~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 331 (366)
....|+.+|...+.+.+... .++++++++||.|.++.....+. .........
T Consensus 166 ------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~---------~~~~~~~~~-- 222 (265)
T 2o23_A 166 ------------GQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTSLPE---------KVCNFLASQ-- 222 (265)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC-------------------CHHHHT--
T ss_pred ------------CCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccccCccccccCH---------HHHHHHHHc--
Confidence 11689999999888887655 58999999999998874321110 000000000
Q ss_pred eeecCCCCcccCcccHHHHHHHHHHHHHhhhhcC
Q psy17528 332 RVVQTDPNISMDVVPGDRVINAMAALAWYFLFSC 365 (366)
Q Consensus 332 ~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~~~~ 365 (366)
.. ....+++.+|+|++++.++.....+|
T Consensus 223 --~~----~~~~~~~~~dva~~~~~l~~~~~~~G 250 (265)
T 2o23_A 223 --VP----FPSRLGDPAEYAHLVQAIIENPFLNG 250 (265)
T ss_dssp --CS----SSCSCBCHHHHHHHHHHHHHCTTCCS
T ss_pred --CC----CcCCCCCHHHHHHHHHHHhhcCccCc
Confidence 00 01347899999999999887554343
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.8e-18 Score=160.50 Aligned_cols=196 Identities=13% Similarity=0.140 Sum_probs=142.0
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++|+||||+|+||.+++++|++.| ++|++++|+... .+.+.+.
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~---~~~~~~~---------------------------- 50 (260)
T 1nff_A 5 LTGKVALVSGGARGMGASHVRAMVAEG---AKVVFGDILDEE---GKAMAAE---------------------------- 50 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHH----------------------------
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHH----------------------------
Confidence 668999999999999999999999999 899999997421 1111110
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~ 191 (366)
. ..++.++.+|+++.+ .+..+++ ++|+||||||.... ...++
T Consensus 51 ---------------~---~~~~~~~~~D~~~~~------~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~ 106 (260)
T 1nff_A 51 ---------------L---ADAARYVHLDVTQPA------QWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQ 106 (260)
T ss_dssp ---------------T---GGGEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHH
T ss_pred ---------------h---hcCceEEEecCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHH
Confidence 0 124778899999976 6766665 79999999997532 34567
Q ss_pred HHHHHHHHHHHHHHHHH----HhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 192 TAYNINVKGTQTILALA----KRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a----~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
..+++|+.++..+.+.+ ++. +..+||++||..++.... +
T Consensus 107 ~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~~~~---------~--------------------------- 149 (260)
T 1nff_A 107 RILDVNLTGVFLGIRAVVKPMKEA-GRGSIINISSIEGLAGTV---------A--------------------------- 149 (260)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTSCCT---------T---------------------------
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhc-CCCEEEEEeehhhcCCCC---------C---------------------------
Confidence 88999999997665544 333 567999999987653211 0
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
...|+.+|...+.+.+... +|++++++|||.|+++... +.. .. +. .....
T Consensus 150 --~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~----~~~--------------~~---~~--~~~~~ 204 (260)
T 1nff_A 150 --CHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTD----WVP--------------ED---IF--QTALG 204 (260)
T ss_dssp --BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGT----TSC--------------TT---CS--CCSSS
T ss_pred --chhHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCCCCccc----cch--------------hh---HH--hCccC
Confidence 1679999999999887655 5899999999999987532 000 00 00 11124
Q ss_pred CcccHHHHHHHHHHHHHhh
Q psy17528 343 DVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~ 361 (366)
.+++.+|+|++++.++...
T Consensus 205 ~~~~~~dvA~~v~~l~s~~ 223 (260)
T 1nff_A 205 RAAEPVEVSNLVVYLASDE 223 (260)
T ss_dssp SCBCHHHHHHHHHHHHSGG
T ss_pred CCCCHHHHHHHHHHHhCcc
Confidence 5789999999999988654
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=99.79 E-value=4.7e-18 Score=158.03 Aligned_cols=210 Identities=15% Similarity=0.081 Sum_probs=145.0
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|+++||||+|+||.+++++|++.| ++|++++|+.. . ...+.+. .
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G---~~V~~~~r~~~-~----~~~~~l~--------~----------------- 48 (255)
T 2q2v_A 2 LKGKTALVTGSTSGIGLGIAQVLARAG---ANIVLNGFGDP-A----PALAEIA--------R----------------- 48 (255)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTT---CEEEEECSSCC-H----HHHHHHH--------T-----------------
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCch-H----HHHHHHH--------h-----------------
Confidence 568999999999999999999999998 88999999754 1 1111110 0
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
...++.++.+|+++.+ .+..+++ ++|+||||||... ....++
T Consensus 49 ------------------~~~~~~~~~~D~~~~~------~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~ 104 (255)
T 2q2v_A 49 ------------------HGVKAVHHPADLSDVA------QIEALFALAEREFGGVDILVNNAGIQHVAPVEQFPLESWD 104 (255)
T ss_dssp ------------------TSCCEEEECCCTTSHH------HHHHHHHHHHHHHSSCSEEEECCCCCCCBCGGGCCHHHHH
T ss_pred ------------------cCCceEEEeCCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHH
Confidence 1246788999999976 6776665 7999999999643 134567
Q ss_pred HHHHHHHHHHHHHHHHH----HhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 192 TAYNINVKGTQTILALA----KRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a----~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
..+++|+.++..+.+.+ ++. +..+||++||..++....
T Consensus 105 ~~~~~N~~~~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~~~~------------------------------------- 146 (255)
T 2q2v_A 105 KIIALNLSAVFHGTRLALPGMRAR-NWGRIINIASVHGLVGST------------------------------------- 146 (255)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCGGGTSCCT-------------------------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEEcCchhccCCC-------------------------------------
Confidence 88999999877766654 343 567999999987653211
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcc----eeecCCC
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLI----RVVQTDP 338 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~l~~~~ 338 (366)
....|+.+|...+.+.+... +++++++++||.|+++.... .. .. .... .+.. ..+....
T Consensus 147 -~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-------~~--~~-~~~~-~~~~~~~~~~~~~~~ 214 (255)
T 2q2v_A 147 -GKAAYVAAKHGVVGLTKVVGLETATSNVTCNAICPGWVLTPLVQK-------QI--DD-RAAN-GGDPLQAQHDLLAEK 214 (255)
T ss_dssp -TBHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSBCCHHHHH-------HH--HH-HHHH-TCCHHHHHHHHHTTT
T ss_pred -CchhHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcCcchhh-------hc--cc-cccc-ccchHHHHHHHHhcc
Confidence 01679999999999887765 58999999999999863210 00 00 0000 0000 0000112
Q ss_pred CcccCcccHHHHHHHHHHHHHhhh
Q psy17528 339 NISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 339 ~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
.....+++++|+|++++.++....
T Consensus 215 ~p~~~~~~~~dvA~~~~~l~s~~~ 238 (255)
T 2q2v_A 215 QPSLAFVTPEHLGELVLFLCSEAG 238 (255)
T ss_dssp CTTCCCBCHHHHHHHHHHHTSGGG
T ss_pred CCCCCCcCHHHHHHHHHHHhCCcc
Confidence 234568999999999999887643
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=99.79 E-value=2.3e-18 Score=158.05 Aligned_cols=203 Identities=13% Similarity=0.171 Sum_probs=141.6
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEE-EcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILL-IRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~-~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
+++|+||||+|+||.+++++|++.| ++|+++ .|+... .+.+.+.+ ..
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~G---~~v~~~~~r~~~~---~~~~~~~~--------~~------------------ 48 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKAG---CKVLVNYARSAKA---AEEVSKQI--------EA------------------ 48 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSCHHH---HHHHHHHH--------HH------------------
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEcCCCHHH---HHHHHHHH--------Hh------------------
Confidence 4789999999999999999999998 788885 665321 11111111 11
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIRT 192 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~~ 192 (366)
...++.++.+|+++.+ .+.++++ ++|+|||+||... ....++.
T Consensus 49 -----------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~ 105 (244)
T 1edo_A 49 -----------------YGGQAITFGGDVSKEA------DVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDE 105 (244)
T ss_dssp -----------------HTCEEEEEECCTTSHH------HHHHHHHHHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHH
T ss_pred -----------------cCCcEEEEeCCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCcCcccCCHHHHHH
Confidence 1246788999999876 6766665 6899999999753 2245677
Q ss_pred HHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCC
Q psy17528 193 AYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGK 269 (366)
Q Consensus 193 ~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (366)
.+++|+.++..+++.+.+. .+..+||++||..++.... .
T Consensus 106 ~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~--------------------------------------~ 147 (244)
T 1edo_A 106 VIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNI--------------------------------------G 147 (244)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCT--------------------------------------T
T ss_pred HHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECChhhcCCCC--------------------------------------C
Confidence 8999999999888876542 2567999999986542210 1
Q ss_pred CchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCc
Q psy17528 270 PNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDV 344 (366)
Q Consensus 270 ~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~ 344 (366)
...|+.+|...+.+.+.+. .+++++++|||.|+++..... . ..+....... .....+
T Consensus 148 ~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~-------~--~~~~~~~~~~---------~~~~~~ 209 (244)
T 1edo_A 148 QANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKL-------G--EDMEKKILGT---------IPLGRT 209 (244)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTT-------C--HHHHHHHHTS---------CTTCSC
T ss_pred CccchhhHHHHHHHHHHHHHHhhhcCCEEEEEeeCccccchhhhc-------C--hHHHHHHhhc---------CCCCCC
Confidence 1679999999888887655 589999999999998643211 0 1111111111 112458
Q ss_pred ccHHHHHHHHHHHHHhh
Q psy17528 345 VPGDRVINAMAALAWYF 361 (366)
Q Consensus 345 v~vdDva~ai~~~~~~~ 361 (366)
++.+|+|++++.++.++
T Consensus 210 ~~~~dva~~~~~l~~~~ 226 (244)
T 1edo_A 210 GQPENVAGLVEFLALSP 226 (244)
T ss_dssp BCHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHhCCC
Confidence 89999999999988543
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.1e-18 Score=158.61 Aligned_cols=205 Identities=15% Similarity=0.120 Sum_probs=135.7
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEE-cCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLI-RTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~-R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
+++++|+||||+|+||.+++++|++.| ++|++++ |+.. ..+.+.+.+. .
T Consensus 3 l~~~~vlItGasggiG~~~a~~l~~~G---~~V~~~~~r~~~---~~~~~~~~~~--------~---------------- 52 (247)
T 2hq1_A 3 LKGKTAIVTGSSRGLGKAIAWKLGNMG---ANIVLNGSPAST---SLDATAEEFK--------A---------------- 52 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTT---CEEEEEECTTCS---HHHHHHHHHH--------H----------------
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCC---CEEEEEcCcCHH---HHHHHHHHHH--------h----------------
Confidence 467899999999999999999999998 7888884 4432 1122221111 0
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHI 190 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~ 190 (366)
...++.++.+|+++.+ .+..+++ ++|+||||||.... ...+
T Consensus 53 -------------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~ 107 (247)
T 2hq1_A 53 -------------------AGINVVVAKGDVKNPE------DVENMVKTAMDAFGRIDILVNNAGITRDTLMLKMSEKDW 107 (247)
T ss_dssp -------------------TTCCEEEEESCTTSHH------HHHHHHHHHHHHHSCCCEEEECC---------------C
T ss_pred -------------------cCCcEEEEECCCCCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHH
Confidence 1246889999999976 6666654 78999999997532 2344
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 191 RTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
+..+++|+.++..+.+.+.+. .+.++||++||........
T Consensus 108 ~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~------------------------------------- 150 (247)
T 2hq1_A 108 DDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIAGIIGNA------------------------------------- 150 (247)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC---------------------------------------------
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCCC-------------------------------------
Confidence 678899999988887766531 2567999999975431110
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
....|+.+|...|.+++.+. .++++++++||.+.++.... +. .........+ ....
T Consensus 151 -~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-------~~--~~~~~~~~~~---------~~~~ 211 (247)
T 2hq1_A 151 -GQANYAASKAGLIGFTKSIAKEFAAKGIYCNAVAPGIIKTDMTDV-------LP--DKVKEMYLNN---------IPLK 211 (247)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHT-------SC--HHHHHHHHTT---------STTS
T ss_pred -CCcHhHHHHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEeccchhh-------cc--hHHHHHHHhh---------CCCC
Confidence 01679999999999887765 58999999999998753211 11 1111111111 1234
Q ss_pred CcccHHHHHHHHHHHHHhh
Q psy17528 343 DVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~ 361 (366)
.+++++|+|++++.++..+
T Consensus 212 ~~~~~~dva~~~~~l~~~~ 230 (247)
T 2hq1_A 212 RFGTPEEVANVVGFLASDD 230 (247)
T ss_dssp SCBCHHHHHHHHHHHHSGG
T ss_pred CCCCHHHHHHHHHHHcCcc
Confidence 6889999999999888654
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-17 Score=156.84 Aligned_cols=227 Identities=15% Similarity=0.069 Sum_probs=152.2
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCc------CHHHHHHHHhhhhhhhhhhhcCCCCCCcc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGST------SITQRVYNYFNDAVFDRMRLECPNYADKV 117 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 117 (366)
..+++|++|||||+|+||.+++++|++.| .+|++++|+.... ...+++.+... .+..
T Consensus 9 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-----~~~~--------- 71 (278)
T 3sx2_A 9 GPLTGKVAFITGAARGQGRAHAVRLAADG---ADIIAVDLCDQIASVPYPLATPEELAATVK-----LVED--------- 71 (278)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEECCSCCTTCSSCCCCHHHHHHHHH-----HHHH---------
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCC---CeEEEEecccccccccccccchHHHHHHHH-----HHHh---------
Confidence 34678999999999999999999999999 8899999873211 00122221111 0111
Q ss_pred ccccccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC---hh
Q psy17528 118 DIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR---FD 187 (366)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~---~~ 187 (366)
...++.++.+|+++.+ .+..+++ ++|++|||||... ..
T Consensus 72 --------------------------~~~~~~~~~~D~~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~ 119 (278)
T 3sx2_A 72 --------------------------IGSRIVARQADVRDRE------SLSAALQAGLDELGRLDIVVANAGIAPMSAGD 119 (278)
T ss_dssp --------------------------HTCCEEEEECCTTCHH------HHHHHHHHHHHHHCCCCEEEECCCCCCCSSTH
T ss_pred --------------------------cCCeEEEEeCCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCH
Confidence 1357899999999987 6666664 7899999999753 34
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh----cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhh
Q psy17528 188 EHIRTAYNINVKGTQTILALAKR----MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNE 263 (366)
Q Consensus 188 ~~~~~~~~~nv~~~~~ll~~a~~----~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 263 (366)
..++..+++|+.++..+++++.+ .+...+||++||..++.... .+. +.
T Consensus 120 ~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------~~~-~~------------------- 171 (278)
T 3sx2_A 120 DGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVG--------SAD-PG------------------- 171 (278)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCC--------CSS-HH-------------------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHHhcCCCc--------cCC-CC-------------------
Confidence 56788999999999999887643 22356899999986553210 000 00
Q ss_pred cccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHH-HHhcCcceeecCC
Q psy17528 264 HIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALAL-GAGTGLIRVVQTD 337 (366)
Q Consensus 264 ~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~l~~~ 337 (366)
...|+.+|...+.+.+.+. +++++++++||.|.++..... . ...... .............
T Consensus 172 ------~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~------~--~~~~~~~~~~~~~~~~~~~~ 237 (278)
T 3sx2_A 172 ------SVGYVAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVETPMINNE------F--TREWLAKMAAATDTPGAMGN 237 (278)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSH------H--HHHHHHHHHHHCC--CTTSC
T ss_pred ------chHhHHHHHHHHHHHHHHHHHHhccCcEEEEEecCCccCccchhh------h--HHHHHhhccchhhhhhhhhh
Confidence 1679999999999887765 689999999999998754310 0 011111 1111111111222
Q ss_pred CCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 338 PNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 338 ~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
... ..+++.+|+|++++.++....
T Consensus 238 ~~p-~~~~~p~dvA~~v~~l~s~~~ 261 (278)
T 3sx2_A 238 AMP-VEVLAPEDVANAVAWLVSDQA 261 (278)
T ss_dssp SSS-CSSBCHHHHHHHHHHHTSGGG
T ss_pred hcC-cCcCCHHHHHHHHHHHhCccc
Confidence 223 678999999999999886543
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=5.7e-18 Score=157.71 Aligned_cols=205 Identities=15% Similarity=0.128 Sum_probs=142.7
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|++|||||+|+||.+++++|++.| ++|++++|+... +.+.+.
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~----~~~~~~---------------------------- 48 (256)
T 2d1y_A 4 FAGKGVLVTGGARGIGRAIAQAFAREG---ALVALCDLRPEG----KEVAEA---------------------------- 48 (256)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSTTH----HHHHHH----------------------------
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCChhH----HHHHHH----------------------------
Confidence 568999999999999999999999998 899999997542 111110
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~ 191 (366)
. .. .++.+|+++.+ .+..+++ ++|+||||||.... ...++
T Consensus 49 ---------------~----~~-~~~~~D~~~~~------~~~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~ 102 (256)
T 2d1y_A 49 ---------------I----GG-AFFQVDLEDER------ERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWR 102 (256)
T ss_dssp ---------------H----TC-EEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHH
T ss_pred ---------------h----hC-CEEEeeCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHH
Confidence 0 13 67899999876 5665554 68999999997532 24567
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
..+++|+.++..+++++.+. .+..++|++||..++....
T Consensus 103 ~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~-------------------------------------- 144 (256)
T 2d1y_A 103 RVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAEQ-------------------------------------- 144 (256)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSBCT--------------------------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccccccCCCC--------------------------------------
Confidence 88999999999998876531 2567999999986542210
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHh-cCcceeecCCCCccc
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAG-TGLIRVVQTDPNISM 342 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~l~~~~~~~~ 342 (366)
....|+.+|...+.+.+.+. +++++++++||.|.++... .++.... .......+.......
T Consensus 145 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~ 211 (256)
T 2d1y_A 145 ENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVL-------------EAIALSPDPERTRRDWEDLHALR 211 (256)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHH-------------HHHC--------CHHHHTTSTTS
T ss_pred CChhHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCccCchhh-------------hccccccCCHHHHHHHHhcCCCC
Confidence 01679999999999887765 5899999999999865210 0000000 000000011122345
Q ss_pred CcccHHHHHHHHHHHHHhhh
Q psy17528 343 DVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~~ 362 (366)
.+++++|+|++++.++....
T Consensus 212 ~~~~~~dvA~~~~~l~s~~~ 231 (256)
T 2d1y_A 212 RLGKPEEVAEAVLFLASEKA 231 (256)
T ss_dssp SCBCHHHHHHHHHHHHSGGG
T ss_pred CCcCHHHHHHHHHHHhCchh
Confidence 68999999999999887653
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-17 Score=155.42 Aligned_cols=203 Identities=15% Similarity=0.097 Sum_probs=141.8
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++++++||||+|+||.+++++|++.| ++|++++|+.. ++.+.. ..
T Consensus 2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~------~~~~~~---------~~--------------- 48 (254)
T 1hdc_A 2 DLSGKTVIITGGARGLGAEAARQAVAAG---ARVVLADVLDE------EGAATA---------RE--------------- 48 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHHH---------HT---------------
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHHH---------HH---------------
Confidence 3678999999999999999999999999 89999999742 111110 00
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHI 190 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~ 190 (366)
. ..++.++.+|+++.+ .+..+++ ++|++|||||... ....+
T Consensus 49 ----------------~---~~~~~~~~~D~~~~~------~~~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~ 103 (254)
T 1hdc_A 49 ----------------L---GDAARYQHLDVTIEE------DWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERF 103 (254)
T ss_dssp ----------------T---GGGEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCSCGGGSCHHHH
T ss_pred ----------------h---CCceeEEEecCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHH
Confidence 1 246788999999876 6666665 7999999999753 12456
Q ss_pred HHHHHHHHHHHHHHHHH----HHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 191 RTAYNINVKGTQTILAL----AKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~----a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
+..+++|+.++..+.+. +++. +..+||++||..++....
T Consensus 104 ~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~~~~------------------------------------ 146 (254)
T 1hdc_A 104 RKVVEINLTGVFIGMKTVIPAMKDA-GGGSIVNISSAAGLMGLA------------------------------------ 146 (254)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTSCCT------------------------------------
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEECchhhccCCC------------------------------------
Confidence 78899999998755544 4443 567999999987652210
Q ss_pred CCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcc
Q psy17528 267 GGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNIS 341 (366)
Q Consensus 267 ~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~ 341 (366)
....|+.+|...+.+.+... +++++++++||.|+++.... ........+. .....
T Consensus 147 --~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-----------------~~~~~~~~~~-~~~p~ 206 (254)
T 1hdc_A 147 --LTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMTAE-----------------TGIRQGEGNY-PNTPM 206 (254)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHH-----------------HTCCCSTTSC-TTSTT
T ss_pred --CchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccCcCccccc-----------------cchhHHHHHH-hcCCC
Confidence 11689999999999887765 58999999999998863210 0000000000 11112
Q ss_pred cCcc-cHHHHHHHHHHHHHhhh
Q psy17528 342 MDVV-PGDRVINAMAALAWYFL 362 (366)
Q Consensus 342 ~~~v-~vdDva~ai~~~~~~~~ 362 (366)
..+. +.+|+|++++.++....
T Consensus 207 ~~~~~~~~dvA~~v~~l~s~~~ 228 (254)
T 1hdc_A 207 GRVGNEPGEIAGAVVKLLSDTS 228 (254)
T ss_dssp SSCB-CHHHHHHHHHHHHSGGG
T ss_pred CCCCCCHHHHHHHHHHHhCchh
Confidence 3467 99999999999887653
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.3e-18 Score=158.80 Aligned_cols=208 Identities=13% Similarity=0.113 Sum_probs=148.2
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++++++||||+|+||.+++++|++.| .+|++++|+... .+.+.+.+ ..
T Consensus 9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~---~~~~~~~~--------~~---------------- 58 (256)
T 3gaf_A 9 HLNDAVAIVTGAAAGIGRAIAGTFAKAG---ASVVVTDLKSEG---AEAVAAAI--------RQ---------------- 58 (256)
T ss_dssp CCTTCEEEECSCSSHHHHHHHHHHHHHT---CEEEEEESSHHH---HHHHHHHH--------HH----------------
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHHH--------Hh----------------
Confidence 3578999999999999999999999999 889999997431 12222111 11
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh------hhhHH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF------DEHIR 191 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~------~~~~~ 191 (366)
...++.++.+|+++.+ .+..+++ ++|++|||||.... ...++
T Consensus 59 -------------------~~~~~~~~~~Dv~d~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~ 113 (256)
T 3gaf_A 59 -------------------AGGKAIGLECNVTDEQ------HREAVIKAALDQFGKITVLVNNAGGGGPKPFDMPMSDFE 113 (256)
T ss_dssp -------------------TTCCEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCTTCCHHHHH
T ss_pred -------------------cCCcEEEEECCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCCCCHHHHH
Confidence 1357889999999976 6666554 78999999997532 34567
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
..+++|+.++..+++++.+. .+..++|++||..++....
T Consensus 114 ~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------------------------------------- 155 (256)
T 3gaf_A 114 WAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGENTNV-------------------------------------- 155 (256)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTCCCT--------------------------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHHcCCCC--------------------------------------
Confidence 88999999999998876431 2557999999987652211
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
....|+.+|...+.+.+.+. +++++++++||.|.++.... .. .......... ......
T Consensus 156 ~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~-------~~-~~~~~~~~~~---------~~p~~r 218 (256)
T 3gaf_A 156 RMASYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDALAT-------VL-TPEIERAMLK---------HTPLGR 218 (256)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHH-------HC-CHHHHHHHHT---------TCTTSS
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEEccccCchhhh-------cc-CHHHHHHHHh---------cCCCCC
Confidence 12689999999999987765 58999999999998753210 00 0111111111 123356
Q ss_pred cccHHHHHHHHHHHHHhhh
Q psy17528 344 VVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~~~ 362 (366)
+.+.+|+|++++.++....
T Consensus 219 ~~~~~dva~~~~~L~s~~~ 237 (256)
T 3gaf_A 219 LGEAQDIANAALFLCSPAA 237 (256)
T ss_dssp CBCHHHHHHHHHHHHSGGG
T ss_pred CCCHHHHHHHHHHHcCCcc
Confidence 8899999999999886543
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.2e-18 Score=162.35 Aligned_cols=211 Identities=14% Similarity=0.075 Sum_probs=144.7
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++++|+||||+|+||.+++++|++.| ++|++++|+... .+.+.+.+ ...
T Consensus 23 ~l~~k~vlITGasggiG~~la~~L~~~G---~~V~~~~r~~~~---~~~~~~~l--------~~~--------------- 73 (302)
T 1w6u_A 23 SFQGKVAFITGGGTGLGKGMTTLLSSLG---AQCVIASRKMDV---LKATAEQI--------SSQ--------------- 73 (302)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHHH--------HHH---------------
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHHH--------HHh---------------
Confidence 4678999999999999999999999998 889999997421 11111111 100
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHI 190 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~ 190 (366)
...++.++.+|+++.+ .+..+++ .+|+||||||... ....+
T Consensus 74 -------------------~~~~~~~~~~Dl~~~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~ 128 (302)
T 1w6u_A 74 -------------------TGNKVHAIQCDVRDPD------MVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAW 128 (302)
T ss_dssp -------------------HSSCEEEEECCTTCHH------HHHHHHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHH
T ss_pred -------------------cCCceEEEEeCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCccccCCHHHH
Confidence 0246889999999876 6666654 4699999999642 13456
Q ss_pred HHHHHHHHHHHHHHHHHHHh----cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 191 RTAYNINVKGTQTILALAKR----MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~----~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
+..+++|+.++..+++.+.+ ..+..+||++||.+++....
T Consensus 129 ~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~~~------------------------------------ 172 (302)
T 1w6u_A 129 KTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSG------------------------------------ 172 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCCT------------------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcccccccCCC------------------------------------
Confidence 77899999999988877643 22457999999987653211
Q ss_pred CCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcc
Q psy17528 267 GGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNIS 341 (366)
Q Consensus 267 ~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~ 341 (366)
....|+.+|...|.+++.+. ++++++++|||.|+++.... ...... ........+ ...
T Consensus 173 --~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~--~~~~~~----~~~~~~~~~---------~p~ 235 (302)
T 1w6u_A 173 --FVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFS--RLDPTG----TFEKEMIGR---------IPC 235 (302)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC--------CCTTS----HHHHHHHTT---------CTT
T ss_pred --CcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeccCCCcchhh--hcccch----hhHHHHHhc---------CCc
Confidence 12689999999999987765 58999999999999874311 000000 011111121 112
Q ss_pred cCcccHHHHHHHHHHHHHhhh
Q psy17528 342 MDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 342 ~~~v~vdDva~ai~~~~~~~~ 362 (366)
..+++++|+|++++.++....
T Consensus 236 ~~~~~~~dva~~~~~l~~~~~ 256 (302)
T 1w6u_A 236 GRLGTVEELANLAAFLCSDYA 256 (302)
T ss_dssp SSCBCHHHHHHHHHHHTSGGG
T ss_pred CCCCCHHHHHHHHHHHcCCcc
Confidence 358899999999999886543
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=4.1e-18 Score=162.13 Aligned_cols=210 Identities=13% Similarity=0.111 Sum_probs=150.6
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
..+++|+||||||+|+||.+++++|++.| .+|++++|+... ..+.+.+..
T Consensus 43 ~~l~gk~vlVTGas~GIG~aia~~la~~G---~~V~~~~r~~~~--~~~~~~~~~------------------------- 92 (291)
T 3ijr_A 43 EKLKGKNVLITGGDSGIGRAVSIAFAKEG---ANIAIAYLDEEG--DANETKQYV------------------------- 92 (291)
T ss_dssp STTTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSCHH--HHHHHHHHH-------------------------
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCchH--HHHHHHHHH-------------------------
Confidence 34678999999999999999999999999 899999997531 111111111
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC--------hhh
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR--------FDE 188 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~--------~~~ 188 (366)
.....++.++.+|+++.+ .+..+++ ++|++|||||... ...
T Consensus 93 ------------------~~~~~~~~~~~~Dv~d~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~ 148 (291)
T 3ijr_A 93 ------------------EKEGVKCVLLPGDLSDEQ------HCKDIVQETVRQLGSLNILVNNVAQQYPQQGLEYITAE 148 (291)
T ss_dssp ------------------HTTTCCEEEEESCTTSHH------HHHHHHHHHHHHHSSCCEEEECCCCCCCCSSGGGCCHH
T ss_pred ------------------HhcCCcEEEEECCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCcCCCCCcccCCHH
Confidence 112357889999999976 6666554 6899999999642 234
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 189 HIRTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 189 ~~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
.++..+++|+.++..+++++.+. ....+||++||..++....
T Consensus 149 ~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~------------------------------------- 191 (291)
T 3ijr_A 149 QLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAYEGNE------------------------------------- 191 (291)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHHHHCCT-------------------------------------
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHhcCCCC-------------------------------------
Confidence 56789999999999999988763 2345899999987653211
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
....|+.+|...+.+.+.+. +++++++++||.|+++.... .+. ...... +.......
T Consensus 192 -~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~------~~~--~~~~~~---------~~~~~p~~ 253 (291)
T 3ijr_A 192 -TLIDYSATKGAIVAFTRSLSQSLVQKGIRVNGVAPGPIWTPLIPS------SFD--EKKVSQ---------FGSNVPMQ 253 (291)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTHHHH------HSC--HHHHHH---------TTTTSTTS
T ss_pred -CChhHHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCCCcCCcccc------cCC--HHHHHH---------HHccCCCC
Confidence 11679999999999887765 58999999999999863210 000 011111 11223345
Q ss_pred CcccHHHHHHHHHHHHHhhh
Q psy17528 343 DVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~~ 362 (366)
.+.+.+|+|++++.++....
T Consensus 254 r~~~p~dvA~~v~~L~s~~~ 273 (291)
T 3ijr_A 254 RPGQPYELAPAYVYLASSDS 273 (291)
T ss_dssp SCBCGGGTHHHHHHHHSGGG
T ss_pred CCcCHHHHHHHHHHHhCCcc
Confidence 68899999999999886654
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=99.78 E-value=6.8e-18 Score=155.51 Aligned_cols=207 Identities=14% Similarity=0.138 Sum_probs=143.6
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++++|+||||+|+||.+++++|++.| ++|++++|+... .+.+.+. +
T Consensus 3 ~~~~k~vlVtGasggiG~~~a~~l~~~G---~~V~~~~r~~~~---~~~~~~~--------~------------------ 50 (251)
T 1zk4_A 3 RLDGKVAIITGGTLGIGLAIATKFVEEG---AKVMITGRHSDV---GEKAAKS--------V------------------ 50 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHH--------H------------------
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHH--------h------------------
Confidence 4678999999999999999999999998 889999997421 1111110 0
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHI 190 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~ 190 (366)
.. ..++.++.+|+.+.+ .+..+++ .+|+||||||... ....+
T Consensus 51 ----------------~~--~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~ 106 (251)
T 1zk4_A 51 ----------------GT--PDQIQFFQHDSSDED------GWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEW 106 (251)
T ss_dssp ----------------CC--TTTEEEEECCTTCHH------HHHHHHHHHHHHHSSCCEEEECCCCCCCCCTTTCCHHHH
T ss_pred ----------------hc--cCceEEEECCCCCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHH
Confidence 00 147889999999876 6666554 5899999999643 12456
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---CCC-cEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 191 RTAYNINVKGTQTILALAKRM---KGL-KSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~---~~~-~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
+..+++|+.++..+.+.+.+. .+. ++||++||..++....
T Consensus 107 ~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~------------------------------------ 150 (251)
T 1zk4_A 107 RKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGDP------------------------------------ 150 (251)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCCT------------------------------------
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCchhccCCC------------------------------------
Confidence 778999999887776654321 244 7999999987653211
Q ss_pred CCCCchHHHHHHHHHHHHHHhc-------CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCC
Q psy17528 267 GGKPNSYTLTKATAEDLVRQVG-------HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPN 339 (366)
Q Consensus 267 ~~~~~~Y~~sK~~~E~~l~~~~-------~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~ 339 (366)
....|+.+|...|.+++.+. .+++++++|||.|+++.....+ . . ....... ...
T Consensus 151 --~~~~Y~~sK~a~~~~~~~~a~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~-------~-~-~~~~~~~--------~~~ 211 (251)
T 1zk4_A 151 --SLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLP-------G-A-EEAMSQR--------TKT 211 (251)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTST-------T-H-HHHHTST--------TTC
T ss_pred --CCccchHHHHHHHHHHHHHHHHhcccCCCeEEEEEeeCcCcchhhhhcC-------c-h-hhhHHHh--------hcC
Confidence 11689999999998886543 4799999999999987432110 0 0 0011010 111
Q ss_pred cccCcccHHHHHHHHHHHHHhhh
Q psy17528 340 ISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 340 ~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
....+++.+|+|++++.++....
T Consensus 212 ~~~~~~~~~dva~~~~~l~~~~~ 234 (251)
T 1zk4_A 212 PMGHIGEPNDIAYICVYLASNES 234 (251)
T ss_dssp TTSSCBCHHHHHHHHHHHHSGGG
T ss_pred CCCCCcCHHHHHHHHHHHcCccc
Confidence 23458999999999999887653
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.1e-18 Score=158.55 Aligned_cols=203 Identities=14% Similarity=0.100 Sum_probs=124.7
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++||||||+|+||.+++++|++.| .+|++++|+... .+.+.+.+. .
T Consensus 7 ~~~k~vlITGas~giG~~~a~~l~~~G---~~V~~~~r~~~~---~~~~~~~~~--------~----------------- 55 (253)
T 3qiv_A 7 FENKVGIVTGSGGGIGQAYAEALAREG---AAVVVADINAEA---AEAVAKQIV--------A----------------- 55 (253)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHHHH--------H-----------------
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEcCCHHH---HHHHHHHHH--------h-----------------
Confidence 568999999999999999999999999 889999997431 122222111 1
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC----------hhh
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR----------FDE 188 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~----------~~~ 188 (366)
...++.++.+|+++.+ .+..+++ ++|+||||||... ...
T Consensus 56 ------------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~ 111 (253)
T 3qiv_A 56 ------------------DGGTAISVAVDVSDPE------SAKAMADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPE 111 (253)
T ss_dssp ------------------TTCEEEEEECCTTSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCGGGGGCTTTSCHH
T ss_pred ------------------cCCcEEEEEccCCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCCcccccCCHH
Confidence 1357889999999986 6666664 7899999999731 234
Q ss_pred hHHHHHHHHHHHHHHHHHHH----HhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhc
Q psy17528 189 HIRTAYNINVKGTQTILALA----KRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEH 264 (366)
Q Consensus 189 ~~~~~~~~nv~~~~~ll~~a----~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 264 (366)
.++..+++|+.++..+.+.+ .+. +..+||++||..++..
T Consensus 112 ~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~~------------------------------------ 154 (253)
T 3qiv_A 112 YYKKFMSVNLDGALWCTRAVYKKMTKR-GGGAIVNQSSTAAWLY------------------------------------ 154 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-TCEEEEEECC------------------------------------------
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhc-CCCEEEEECCccccCC------------------------------------
Confidence 56778999999966665544 333 5678999999876511
Q ss_pred ccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCC
Q psy17528 265 IIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPN 339 (366)
Q Consensus 265 ~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~ 339 (366)
...|+.+|...+.+.+.+. +++++++++||.|+++...... ...+......+ .
T Consensus 155 -----~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~--------~~~~~~~~~~~---------~ 212 (253)
T 3qiv_A 155 -----SNYYGLAKVGINGLTQQLSRELGGRNIRINAIAPGPIDTEANRTTT--------PKEMVDDIVKG---------L 212 (253)
T ss_dssp ----------CCHHHHHHHHHHHHHHTTTTTEEEEEEEC-----------------------------------------
T ss_pred -----CchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecCCcccchhhcC--------cHHHHHHHhcc---------C
Confidence 1569999999998887766 5899999999999987543210 01111111111 1
Q ss_pred cccCcccHHHHHHHHHHHHHhhh
Q psy17528 340 ISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 340 ~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
....+..++|+|++++.++....
T Consensus 213 ~~~~~~~~~dva~~~~~l~s~~~ 235 (253)
T 3qiv_A 213 PLSRMGTPDDLVGMCLFLLSDEA 235 (253)
T ss_dssp -------CCHHHHHHHHHHSGGG
T ss_pred CCCCCCCHHHHHHHHHHHcCccc
Confidence 23346678999999999886554
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.1e-18 Score=161.38 Aligned_cols=220 Identities=15% Similarity=0.069 Sum_probs=146.2
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++|++|||||+|+||.+++++|++.| .+|++++|+... ..+.+.+.+. .
T Consensus 22 ~l~~k~~lVTGas~GIG~~ia~~la~~G---~~V~~~~r~~~~--~~~~~~~~~~--------~---------------- 72 (281)
T 3v2h_A 22 SMMTKTAVITGSTSGIGLAIARTLAKAG---ANIVLNGFGAPD--EIRTVTDEVA--------G---------------- 72 (281)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTT---CEEEEECCCCHH--HHHHHHHHHH--------T----------------
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCChH--HHHHHHHHHh--------h----------------
Confidence 3568999999999999999999999999 899999985321 1112211111 0
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHI 190 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~ 190 (366)
....++.++.+|+++.+ ++..+++ ++|++|||||... ....+
T Consensus 73 ------------------~~~~~~~~~~~Dv~d~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~ 128 (281)
T 3v2h_A 73 ------------------LSSGTVLHHPADMTKPS------EIADMMAMVADRFGGADILVNNAGVQFVEKIEDFPVEQW 128 (281)
T ss_dssp ------------------TCSSCEEEECCCTTCHH------HHHHHHHHHHHHTSSCSEEEECCCCCCCCCGGGCCHHHH
T ss_pred ------------------ccCCcEEEEeCCCCCHH------HHHHHHHHHHHHCCCCCEEEECCCCCCCCCcccCCHHHH
Confidence 11357889999999986 6666664 7899999999753 23456
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 191 RTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
+..+++|+.++..+++++.+. .+..+||++||..++....
T Consensus 129 ~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------------------------------- 171 (281)
T 3v2h_A 129 DRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLVASP------------------------------------- 171 (281)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT-------------------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCcccccCCC-------------------------------------
Confidence 788999999999998876321 2557899999986552211
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcC-cceeecCCCCcc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTG-LIRVVQTDPNIS 341 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~l~~~~~~~ 341 (366)
....|+.+|...+.+.+.+. +|+++++++||.|.++........ .. ........ ........+...
T Consensus 172 -~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~p~ 243 (281)
T 3v2h_A 172 -FKSAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLVEKQIPD---QA----RTRGITEEQVINEVMLKGQPT 243 (281)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----------------------------------CCTT
T ss_pred -CchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEECCCCcCcchhhhcch---hh----hhcCCCHHHHHHHHHHhcCCC
Confidence 12689999999999887765 689999999999998754321000 00 00000000 001112234456
Q ss_pred cCcccHHHHHHHHHHHHHhhh
Q psy17528 342 MDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 342 ~~~v~vdDva~ai~~~~~~~~ 362 (366)
..+++++|+|++++.++....
T Consensus 244 ~r~~~~edvA~~v~~L~s~~a 264 (281)
T 3v2h_A 244 KKFITVEQVASLALYLAGDDA 264 (281)
T ss_dssp CSCBCHHHHHHHHHHHHSSGG
T ss_pred CCccCHHHHHHHHHHHcCCCc
Confidence 789999999999999886654
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.2e-17 Score=153.91 Aligned_cols=211 Identities=11% Similarity=0.049 Sum_probs=147.2
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
+.+++|++|||||+|+||.+++++|++.| .+|++++|+... .+.+.+.
T Consensus 2 ~~l~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~---~~~~~~~-------------------------- 49 (257)
T 3imf_A 2 NAMKEKVVIITGGSSGMGKGMATRFAKEG---ARVVITGRTKEK---LEEAKLE-------------------------- 49 (257)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHH--------------------------
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHH--------------------------
Confidence 34678999999999999999999999999 889999997432 1111111
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhh
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEH 189 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~ 189 (366)
......++.++.+|+++.+ .+..+++ ++|++|||||... ....
T Consensus 50 -----------------~~~~~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~ 106 (257)
T 3imf_A 50 -----------------IEQFPGQILTVQMDVRNTD------DIQKMIEQIDEKFGRIDILINNAAGNFICPAEDLSVNG 106 (257)
T ss_dssp -----------------HCCSTTCEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHH
T ss_pred -----------------HHhcCCcEEEEEccCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHH
Confidence 1112357889999999976 6666654 6899999999642 2345
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcc
Q psy17528 190 IRTAYNINVKGTQTILALAKR----MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHI 265 (366)
Q Consensus 190 ~~~~~~~nv~~~~~ll~~a~~----~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (366)
++..+++|+.++..+.+++.+ .++..++|++||...+....
T Consensus 107 ~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~----------------------------------- 151 (257)
T 3imf_A 107 WNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVATYAWDAGP----------------------------------- 151 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGGSCCT-----------------------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECchhhccCCC-----------------------------------
Confidence 678899999999998887632 22457999999986552211
Q ss_pred cCCCCchHHHHHHHHHHHHHHhc------CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCC
Q psy17528 266 IGGKPNSYTLTKATAEDLVRQVG------HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPN 339 (366)
Q Consensus 266 ~~~~~~~Y~~sK~~~E~~l~~~~------~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~ 339 (366)
....|+.+|...+.+.+... +|+++++++||.|.++........... +...... ..
T Consensus 152 ---~~~~Y~asKaa~~~l~~~la~e~~~~~gIrvn~v~PG~v~t~~~~~~~~~~~~------~~~~~~~---------~~ 213 (257)
T 3imf_A 152 ---GVIHSAAAKAGVLAMTKTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWISEE------MAKRTIQ---------SV 213 (257)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCBSSCCCC-------C------CSHHHHT---------TS
T ss_pred ---CcHHHHHHHHHHHHHHHHHHHHhccccCeEEEEEEECCCcCCcchhhcccCHH------HHHHHHh---------cC
Confidence 12679999999988886654 389999999999998754321000000 0011111 12
Q ss_pred cccCcccHHHHHHHHHHHHHhhh
Q psy17528 340 ISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 340 ~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
....+...+|+|++++.++....
T Consensus 214 p~~r~~~pedvA~~v~~L~s~~~ 236 (257)
T 3imf_A 214 PLGRLGTPEEIAGLAYYLCSDEA 236 (257)
T ss_dssp TTCSCBCHHHHHHHHHHHHSGGG
T ss_pred CCCCCcCHHHHHHHHHHHcCchh
Confidence 23458899999999999887654
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5.5e-18 Score=159.05 Aligned_cols=207 Identities=16% Similarity=0.172 Sum_probs=143.6
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEc-CCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIR-TRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
.|++++++||||+|+||.+++++|++.| ++|++++| +.. ..+.+.+.+. ..
T Consensus 8 ~~~~k~~lVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~---~~~~~~~~~~--------~~-------------- 59 (276)
T 1mxh_A 8 ASECPAAVITGGARRIGHSIAVRLHQQG---FRVVVHYRHSEG---AAQRLVAELN--------AA-------------- 59 (276)
T ss_dssp ---CCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSCHH---HHHHHHHHHH--------HH--------------
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCChH---HHHHHHHHHH--------Hh--------------
Confidence 3678999999999999999999999999 89999999 532 1111111111 00
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcC----CCCCCHHHHHHHHh-------CcCEEEEcCcccCh------
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEAD----TFGLSARDEELLIS-------QTTIIFHIAATVRF------ 186 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~----~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~------ 186 (366)
...++.++.+|+++. + .+..+++ ++|+||||||....
T Consensus 60 --------------------~~~~~~~~~~Dl~~~~~~~~------~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~ 113 (276)
T 1mxh_A 60 --------------------RAGSAVLCKGDLSLSSSLLD------CCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPG 113 (276)
T ss_dssp --------------------STTCEEEEECCCSSSTTHHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-
T ss_pred --------------------cCCceEEEeccCCCccccHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccc
Confidence 024688999999998 5 5655554 78999999996421
Q ss_pred -h-----------hhHHHHHHHHHHHHHHHHHHHHhc--CCC------cEEEEeeCcceecCccccccccCCCCCChHHH
Q psy17528 187 -D-----------EHIRTAYNINVKGTQTILALAKRM--KGL------KSFVHVSTAYCNCDRKFIAEKFYPPVFTAEEL 246 (366)
Q Consensus 187 -~-----------~~~~~~~~~nv~~~~~ll~~a~~~--~~~------~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~ 246 (366)
. ..++..+++|+.++..+++++.+. .+. .+||++||..++....
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------------- 177 (276)
T 1mxh_A 114 DDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAMTDLPLP---------------- 177 (276)
T ss_dssp ----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEECCGGGGSCCT----------------
T ss_pred CcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEEEEECchhhcCCCC----------------
Confidence 1 556778999999999999988763 133 6899999987652210
Q ss_pred HHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHH
Q psy17528 247 SALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMA 321 (366)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~ 321 (366)
....|+.+|...+.+.+.+. +|+++++++||.|+++ .. . . ..
T Consensus 178 ----------------------~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~PG~v~t~-~~-~---~------~~ 224 (276)
T 1mxh_A 178 ----------------------GFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLP-PA-M---P------QE 224 (276)
T ss_dssp ----------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCC-SS-S---C------HH
T ss_pred ----------------------CCeehHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCC-cc-C---C------HH
Confidence 11679999999999887765 5899999999999998 21 1 1 11
Q ss_pred HHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 322 LALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 322 ~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
......... . ..+++++.+|+|++++.++....
T Consensus 225 ~~~~~~~~~----p----~~r~~~~~~dva~~v~~l~s~~~ 257 (276)
T 1mxh_A 225 TQEEYRRKV----P----LGQSEASAAQIADAIAFLVSKDA 257 (276)
T ss_dssp HHHHHHTTC----T----TTSCCBCHHHHHHHHHHHHSGGG
T ss_pred HHHHHHhcC----C----CCCCCCCHHHHHHHHHHHhCccc
Confidence 112222211 1 11238899999999999887543
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.7e-18 Score=162.46 Aligned_cols=219 Identities=12% Similarity=0.034 Sum_probs=144.8
Q ss_pred cccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccc
Q psy17528 43 QEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGIT 122 (366)
Q Consensus 43 ~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (366)
...+++++||||||+|+||.+++++|++.| .+|++++|+... .+.+.+.+. .
T Consensus 26 m~~l~gk~vlVTGas~gIG~~la~~l~~~G---~~V~~~~r~~~~---~~~~~~~l~--------~-------------- 77 (301)
T 3tjr_A 26 LSGFDGRAAVVTGGASGIGLATATEFARRG---ARLVLSDVDQPA---LEQAVNGLR--------G-------------- 77 (301)
T ss_dssp CCCSTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHHHH--------H--------------
T ss_pred HhccCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHH---HHHHHHHHH--------h--------------
Confidence 344678999999999999999999999999 889999997432 111211111 1
Q ss_pred cccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhh
Q psy17528 123 HRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDE 188 (366)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~ 188 (366)
...++.++.+|+++.+ .+..+++ ++|+||||||... ...
T Consensus 78 ---------------------~~~~~~~~~~Dv~d~~------~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~ 130 (301)
T 3tjr_A 78 ---------------------QGFDAHGVVCDVRHLD------EMVRLADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHD 130 (301)
T ss_dssp ---------------------TTCCEEEEECCTTCHH------HHHHHHHHHHHHHSSCSEEEECCCCCCCBCGGGCCHH
T ss_pred ---------------------cCCceEEEEccCCCHH------HHHHHHHHHHHhCCCCCEEEECCCcCCCCCcccCCHH
Confidence 1357889999999976 6666654 7899999999752 234
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh----cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhc
Q psy17528 189 HIRTAYNINVKGTQTILALAKR----MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEH 264 (366)
Q Consensus 189 ~~~~~~~~nv~~~~~ll~~a~~----~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 264 (366)
.++..+++|+.++..+++++.. .+...+||++||..++....
T Consensus 131 ~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------------------------------- 176 (301)
T 3tjr_A 131 DWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLVPNA---------------------------------- 176 (301)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCT----------------------------------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCCCC----------------------------------
Confidence 5678899999999999887643 22256899999987652211
Q ss_pred ccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCC
Q psy17528 265 IIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPN 339 (366)
Q Consensus 265 ~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~ 339 (366)
....|+.+|...+.+.+.+. .|+.+++++||.|.++.... ..... .........+...++...
T Consensus 177 ----~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~ 244 (301)
T 3tjr_A 177 ----GLGTYGVAKYGVVGLAETLAREVKPNGIGVSVLCPMVVETKLVSN-------SERIR-GADYGMSATPEGAFGPLP 244 (301)
T ss_dssp ----TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEECCSCCCSSHHHH-------HHHHC-------------------
T ss_pred ----CchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCccccccccc-------ccccc-chhhccccChhhhccccc
Confidence 11689999999888887665 58999999999998753210 00000 000000011111122223
Q ss_pred cccCcccHHHHHHHHHHHHHhhh
Q psy17528 340 ISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 340 ~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
....+++++|+|++++.+++...
T Consensus 245 ~~~~~~~pedvA~~i~~~l~~~~ 267 (301)
T 3tjr_A 245 TQDESVSADDVARLTADAILANR 267 (301)
T ss_dssp ----CCCHHHHHHHHHHHHHHTC
T ss_pred cccCCCCHHHHHHHHHHHHhcCC
Confidence 34578999999999999988653
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-18 Score=161.20 Aligned_cols=216 Identities=12% Similarity=0.094 Sum_probs=146.3
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|+++||||+|+||.+++++|++.| ++|++++|+... .+.+.+.+. ..
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~---~~~~~~~l~--------~~---------------- 54 (263)
T 3ai3_A 5 ISGKVAVITGSSSGIGLAIAEGFAKEG---AHIVLVARQVDR---LHEAARSLK--------EK---------------- 54 (263)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHHHH--------HH----------------
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEcCCHHH---HHHHHHHHH--------Hh----------------
Confidence 568999999999999999999999998 899999997421 111111110 00
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
...++.++.+|+++.+ .+..+++ ++|+||||||... ....++
T Consensus 55 ------------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~ 110 (263)
T 3ai3_A 55 ------------------FGVRVLEVAVDVATPE------GVDAVVESVRSSFGGADILVNNAGTGSNETIMEAADEKWQ 110 (263)
T ss_dssp ------------------HCCCEEEEECCTTSHH------HHHHHHHHHHHHHSSCSEEEECCCCCCCCCTTTCCHHHHH
T ss_pred ------------------cCCceEEEEcCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHH
Confidence 0246888999999976 6666664 7899999999753 234567
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
..+++|+.++..+++.+.+. .+..+||++||..++....
T Consensus 111 ~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------------------------------------- 152 (263)
T 3ai3_A 111 FYWELLVMAAVRLARGLVPGMRARGGGAIIHNASICAVQPLW-------------------------------------- 152 (263)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT--------------------------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCCCC--------------------------------------
Confidence 88999999998888876431 2567999999987653211
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCC-Cccccccc-hHHHHHHHHhcCcceeecCCCCcc
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPM-PLWIKGFN-GVMALALGAGTGLIRVVQTDPNIS 341 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~-~~~~~~~~-~~~~~~~~~~~g~~~~l~~~~~~~ 341 (366)
....|+.+|...+.+.+.+. ++++++++|||.|+++..... ..+..... ....+....... ....
T Consensus 153 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~p~ 224 (263)
T 3ai3_A 153 YEPIYNVTKAALMMFSKTLATEVIKDNIRVNCINPGLILTPDWIKTAKELTKDNGGDWKGYLQSVADE--------HAPI 224 (263)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHTTTTTCCHHHHHHHHHHH--------HCTT
T ss_pred CcchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhhhhHhhhcccCCcHHHHHHHHHhc--------CCCC
Confidence 01679999999999887765 589999999999998742110 00000000 001111111110 0113
Q ss_pred cCcccHHHHHHHHHHHHHhh
Q psy17528 342 MDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 342 ~~~v~vdDva~ai~~~~~~~ 361 (366)
..+++++|+|++++.++..+
T Consensus 225 ~~~~~~~dvA~~~~~l~s~~ 244 (263)
T 3ai3_A 225 KRFASPEELANFFVFLCSER 244 (263)
T ss_dssp CSCBCHHHHHHHHHHHTSTT
T ss_pred CCCcCHHHHHHHHHHHcCcc
Confidence 46899999999999988754
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=6.5e-18 Score=157.50 Aligned_cols=210 Identities=16% Similarity=0.121 Sum_probs=145.3
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|+|+||||+|+||.+++++|++.| ++|++++|+... .+.+.+ .+..
T Consensus 7 l~~k~vlVTGas~giG~~ia~~l~~~G---~~V~~~~r~~~~---~~~~~~--------~~~~----------------- 55 (260)
T 2ae2_A 7 LEGCTALVTGGSRGIGYGIVEELASLG---ASVYTCSRNQKE---LNDCLT--------QWRS----------------- 55 (260)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHH--------HHHH-----------------
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHH--------HHHh-----------------
Confidence 568999999999999999999999998 889999997421 111111 1111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH--------hCcCEEEEcCcccC-------hhhhH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI--------SQTTIIFHIAATVR-------FDEHI 190 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~--------~~~d~Vih~a~~~~-------~~~~~ 190 (366)
...++.++.+|+++.+ .+..++ .++|++|||||... ....+
T Consensus 56 ------------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~ 111 (260)
T 2ae2_A 56 ------------------KGFKVEASVCDLSSRS------ERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDY 111 (260)
T ss_dssp ------------------TTCEEEEEECCTTCHH------HHHHHHHHHHHHTTTCCCEEEECCCCCCCCCGGGCCHHHH
T ss_pred ------------------cCCcEEEEEcCCCCHH------HHHHHHHHHHHHcCCCCCEEEECCCCCCCCChhhCCHHHH
Confidence 1246888999999976 666665 46899999999643 13456
Q ss_pred HHHHHHHHHHHHHHHHHHHh---cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 191 RTAYNINVKGTQTILALAKR---MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~---~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
+..+++|+.++..+++++.+ ..+..+||++||..++... |
T Consensus 112 ~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------~--------------------------- 154 (260)
T 2ae2_A 112 SLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAV----------P--------------------------- 154 (260)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTSCC----------T---------------------------
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCC----------C---------------------------
Confidence 77899999999999887742 1256799999998654221 0
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
....|+.+|...|.+.+.+. +++++++++||.+.++.... +.. .......+...... ....
T Consensus 155 -~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~---~~~-~~~~~~~~~~~~~~---------~~~~ 220 (260)
T 2ae2_A 155 -YEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEM---TIQ-DPEQKENLNKLIDR---------CALR 220 (260)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHH---HTT-SHHHHHHHHHHHHT---------STTC
T ss_pred -CcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCCCCCcchhh---hcc-ChhhHHHHHHHHhc---------CCCC
Confidence 11679999999999998765 58999999999998753210 000 00000101111111 1234
Q ss_pred CcccHHHHHHHHHHHHHhh
Q psy17528 343 DVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~ 361 (366)
.+++.+|+|++++.++...
T Consensus 221 ~~~~~~dvA~~v~~l~s~~ 239 (260)
T 2ae2_A 221 RMGEPKELAAMVAFLCFPA 239 (260)
T ss_dssp SCBCHHHHHHHHHHHHSGG
T ss_pred CCCCHHHHHHHHHHHcCcc
Confidence 5889999999999988654
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.9e-18 Score=159.69 Aligned_cols=213 Identities=16% Similarity=0.164 Sum_probs=147.6
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
..+++|+++||||+|+||.+++++|++.| .+|++++|+... .+...+. +..
T Consensus 7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~---~~~~~~~--------l~~--------------- 57 (281)
T 3svt_A 7 LSFQDRTYLVTGGGSGIGKGVAAGLVAAG---ASVMIVGRNPDK---LAGAVQE--------LEA--------------- 57 (281)
T ss_dssp -CCTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHH--------HHT---------------
T ss_pred cCcCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHH--------HHH---------------
Confidence 34678999999999999999999999999 889999997432 1111111 111
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC--------hhh
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR--------FDE 188 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~--------~~~ 188 (366)
......++.++.+|+++.+ ++..+++ ++|++|||||... ...
T Consensus 58 -----------------~~~~~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~ 114 (281)
T 3svt_A 58 -----------------LGANGGAIRYEPTDITNED------ETARAVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSE 114 (281)
T ss_dssp -----------------TCCSSCEEEEEECCTTSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHH
T ss_pred -----------------hCCCCceEEEEeCCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCCcccCCHH
Confidence 1111237889999999976 6666654 6799999999621 124
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcc
Q psy17528 189 HIRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHI 265 (366)
Q Consensus 189 ~~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (366)
.++..+++|+.++..+++.+.+. .+..+||++||..++....
T Consensus 115 ~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~----------------------------------- 159 (281)
T 3svt_A 115 AWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAASNTHR----------------------------------- 159 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSCCT-----------------------------------
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHHcCCCC-----------------------------------
Confidence 56778999999999998876542 2445999999986652211
Q ss_pred cCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCc
Q psy17528 266 IGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNI 340 (366)
Q Consensus 266 ~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~ 340 (366)
....|+.+|...+.+.+.+. +++++++++||.|+++.... .............. ..
T Consensus 160 ---~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~-------~~~~~~~~~~~~~~---------~p 220 (281)
T 3svt_A 160 ---WFGAYGVTKSAVDHLMQLAADELGASWVRVNSIRPGLIRTDLVAA-------ITESAELSSDYAMC---------TP 220 (281)
T ss_dssp ---TCTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHH-------HHTCHHHHHHHHHH---------CS
T ss_pred ---CChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhh-------cccCHHHHHHHHhc---------CC
Confidence 12689999999999987765 67999999999999864321 00001111111111 12
Q ss_pred ccCcccHHHHHHHHHHHHHhhh
Q psy17528 341 SMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 341 ~~~~v~vdDva~ai~~~~~~~~ 362 (366)
...+.+++|+|++++.++....
T Consensus 221 ~~r~~~~~dva~~~~~l~s~~~ 242 (281)
T 3svt_A 221 LPRQGEVEDVANMAMFLLSDAA 242 (281)
T ss_dssp SSSCBCHHHHHHHHHHHHSGGG
T ss_pred CCCCCCHHHHHHHHHHHhCccc
Confidence 3457789999999999887654
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=5.3e-18 Score=157.26 Aligned_cols=214 Identities=13% Similarity=0.100 Sum_probs=146.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++|+||||+|+||.+++++|++.| ++|++++|+.... .+.+.++ ...
T Consensus 12 ~~~k~vlITGasggiG~~~a~~l~~~G---~~V~~~~r~~~~~--~~~~~~l---------~~~---------------- 61 (265)
T 1h5q_A 12 FVNKTIIVTGGNRGIGLAFTRAVAAAG---ANVAVIYRSAADA--VEVTEKV---------GKE---------------- 61 (265)
T ss_dssp CTTEEEEEETTTSHHHHHHHHHHHHTT---EEEEEEESSCTTH--HHHHHHH---------HHH----------------
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC---CeEEEEeCcchhh--HHHHHHH---------HHh----------------
Confidence 568899999999999999999999998 8999999975432 1111111 000
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
...++.++.+|+.+.+ .+..+++ .+|+||||||... ....++
T Consensus 62 ------------------~~~~~~~~~~Dl~~~~------~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~ 117 (265)
T 1h5q_A 62 ------------------FGVKTKAYQCDVSNTD------IVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFA 117 (265)
T ss_dssp ------------------HTCCEEEEECCTTCHH------HHHHHHHHHHHHSCSEEEEEECCCCCCCSCGGGCCHHHHH
T ss_pred ------------------cCCeeEEEEeeCCCHH------HHHHHHHHHHHhcCCCCEEEECCCcCCCCchhhCCHHHHH
Confidence 1246889999999876 5665554 4899999999743 224567
Q ss_pred HHHHHHHHHHHHHHHHHHhc----CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 192 TAYNINVKGTQTILALAKRM----KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~----~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
..+++|+.++..+++++.+. +..++||++||..++....... ...
T Consensus 118 ~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~--~~~----------------------------- 166 (265)
T 1h5q_A 118 FVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSL--NGS----------------------------- 166 (265)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEET--TEE-----------------------------
T ss_pred HHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhccccccc--ccc-----------------------------
Confidence 78999999999998876542 2347899999986543211000 000
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
.....|+.+|...|.+++.+. ++++++++|||.|+++..... . .......... ....
T Consensus 167 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~-------~--~~~~~~~~~~---------~~~~ 228 (265)
T 1h5q_A 167 LTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHM-------D--KKIRDHQASN---------IPLN 228 (265)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGS-------C--HHHHHHHHHT---------CTTS
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccccccccc-------c--hhHHHHHHhc---------Cccc
Confidence 012689999999999987765 589999999999998753211 0 1111111111 1123
Q ss_pred CcccHHHHHHHHHHHHHhhh
Q psy17528 343 DVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~~ 362 (366)
.+++.+|+|++++.++....
T Consensus 229 ~~~~~~dva~~~~~l~~~~~ 248 (265)
T 1h5q_A 229 RFAQPEEMTGQAILLLSDHA 248 (265)
T ss_dssp SCBCGGGGHHHHHHHHSGGG
T ss_pred CCCCHHHHHHHHHhhccCch
Confidence 47899999999999887653
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.3e-18 Score=157.92 Aligned_cols=205 Identities=16% Similarity=0.143 Sum_probs=142.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||++++++|++.| ++|++++|+... .+.+.+. +
T Consensus 9 ~~~k~vlITGasggiG~~la~~l~~~G---~~V~~~~r~~~~---~~~~~~~--------~------------------- 55 (254)
T 2wsb_A 9 LDGACAAVTGAGSGIGLEICRAFAASG---ARLILIDREAAA---LDRAAQE--------L------------------- 55 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHH--------H-------------------
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHH--------h-------------------
Confidence 568999999999999999999999998 889999997421 1111110 0
Q ss_pred ccccchhhhhhccccCCCCCCcE-EEEeccCCcCCCCCCHHHHHHHH------hCcCEEEEcCcccCh-------hhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKV-DIVCGQLEADTFGLSARDEELLI------SQTTIIFHIAATVRF-------DEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i-~~~~gDl~~~~~gl~~~~~~~~~------~~~d~Vih~a~~~~~-------~~~~~ 191 (366)
..++ .++.+|+.+.+ .+..++ .++|+||||||.... ...++
T Consensus 56 -------------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~ 110 (254)
T 2wsb_A 56 -------------------GAAVAARIVADVTDAE------AMTAAAAEAEAVAPVSILVNSAGIARLHDALETDDATWR 110 (254)
T ss_dssp -------------------GGGEEEEEECCTTCHH------HHHHHHHHHHHHSCCCEEEECCCCCCCBCSTTCCHHHHH
T ss_pred -------------------cccceeEEEEecCCHH------HHHHHHHHHHhhCCCcEEEECCccCCCCCcccCCHHHHH
Confidence 1245 78899999876 566555 478999999997532 24557
Q ss_pred HHHHHHHHHHHHHHHHHH----hcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 192 TAYNINVKGTQTILALAK----RMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~----~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
..+++|+.++..+.+.+. +. +.++||++||..++.... ..|
T Consensus 111 ~~~~~N~~~~~~l~~~~~~~~~~~-~~~~iv~isS~~~~~~~~-------~~~--------------------------- 155 (254)
T 2wsb_A 111 QVMAVNVDGMFWASRAFGRAMVAR-GAGAIVNLGSMSGTIVNR-------PQF--------------------------- 155 (254)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTSCCS-------SSC---------------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEecchhccCCC-------CCc---------------------------
Confidence 788999999777766543 33 567999999987653211 000
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
...|+.+|...|.+++... ++++++++|||.|+++..... .....+....... ....
T Consensus 156 --~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~Pg~v~t~~~~~~-------~~~~~~~~~~~~~---------~~~~ 217 (254)
T 2wsb_A 156 --ASSYMASKGAVHQLTRALAAEWAGRGVRVNALAPGYVATEMTLKM-------RERPELFETWLDM---------TPMG 217 (254)
T ss_dssp --BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHHH-------HTCHHHHHHHHHT---------STTS
T ss_pred --chHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecccCchhhhcc-------ccChHHHHHHHhc---------CCCC
Confidence 1679999999999987765 489999999999998643110 0001111122211 1124
Q ss_pred CcccHHHHHHHHHHHHHhh
Q psy17528 343 DVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~ 361 (366)
.+++++|+|++++.++...
T Consensus 218 ~~~~~~dva~~~~~l~~~~ 236 (254)
T 2wsb_A 218 RCGEPSEIAAAALFLASPA 236 (254)
T ss_dssp SCBCHHHHHHHHHHHHSGG
T ss_pred CCCCHHHHHHHHHHHhCcc
Confidence 5899999999999988654
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=6.9e-18 Score=158.77 Aligned_cols=211 Identities=17% Similarity=0.180 Sum_probs=141.5
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
..+++++||||||+|+||.+++++|++.| ++|++++|+... .+.+.+. +...
T Consensus 28 ~~l~~k~vlVTGasggIG~~la~~l~~~G---~~V~~~~r~~~~---~~~~~~~--------~~~~-------------- 79 (279)
T 1xg5_A 28 ERWRDRLALVTGASGGIGAAVARALVQQG---LKVVGCARTVGN---IEELAAE--------CKSA-------------- 79 (279)
T ss_dssp GGGTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHH--------HHHT--------------
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEECChHH---HHHHHHH--------HHhc--------------
Confidence 34678999999999999999999999998 889999997421 1111111 1110
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhh
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEH 189 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~ 189 (366)
.....+.++.+|+.+.+ .+..+++ ++|+||||||... ....
T Consensus 80 -------------------~~~~~~~~~~~Dl~~~~------~v~~~~~~~~~~~g~iD~vi~~Ag~~~~~~~~~~~~~~ 134 (279)
T 1xg5_A 80 -------------------GYPGTLIPYRCDLSNEE------DILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSG 134 (279)
T ss_dssp -------------------TCSSEEEEEECCTTCHH------HHHHHHHHHHHHHCCCSEEEECCCCCCCCCTTTCCHHH
T ss_pred -------------------CCCceEEEEEecCCCHH------HHHHHHHHHHHhCCCCCEEEECCCCCCCCCcccCCHHH
Confidence 01246788999999976 6666554 7899999999643 2345
Q ss_pred HHHHHHHHHHH----HHHHHHHHHhcCCC--cEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhh
Q psy17528 190 IRTAYNINVKG----TQTILALAKRMKGL--KSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNE 263 (366)
Q Consensus 190 ~~~~~~~nv~~----~~~ll~~a~~~~~~--~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 263 (366)
++..+++|+.+ ++.++..+++. +. .+||++||..++... +.+ +
T Consensus 135 ~~~~~~~N~~~~~~~~~~~l~~~~~~-~~~~g~iv~isS~~~~~~~--------~~~--~-------------------- 183 (279)
T 1xg5_A 135 WKDMFNVNVLALSICTREAYQSMKER-NVDDGHIININSMSGHRVL--------PLS--V-------------------- 183 (279)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHT-TCCSCEEEEECCGGGTSCC--------SCG--G--------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhc-CCCCceEEEEcChhhcccC--------CCC--C--------------------
Confidence 67889999999 55666666654 43 799999998765211 000 0
Q ss_pred cccCCCCchHHHHHHHHHHHHHHhc-------CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecC
Q psy17528 264 HIIGGKPNSYTLTKATAEDLVRQVG-------HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQT 336 (366)
Q Consensus 264 ~~~~~~~~~Y~~sK~~~E~~l~~~~-------~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~ 336 (366)
...|+.+|...+.+.+.+. .++++++++||.|.++.... . ...........
T Consensus 184 ------~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~---~---~~~~~~~~~~~---------- 241 (279)
T 1xg5_A 184 ------THFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFK---L---HDKDPEKAAAT---------- 241 (279)
T ss_dssp ------GHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHH---H---TTTCHHHHHHH----------
T ss_pred ------CchhHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEecCcccchhhhh---h---cccChhHHhhh----------
Confidence 1679999999888876543 47999999999998763100 0 00000000000
Q ss_pred CCCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 337 DPNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 337 ~~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
.....+++.+|+|++++.++..+.
T Consensus 242 --~~~~~~~~~~dvA~~i~~l~~~~~ 265 (279)
T 1xg5_A 242 --YEQMKCLKPEDVAEAVIYVLSTPA 265 (279)
T ss_dssp --HC---CBCHHHHHHHHHHHHHSCT
T ss_pred --cccccCCCHHHHHHHHHHHhcCCc
Confidence 011347899999999999988654
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-17 Score=154.88 Aligned_cols=205 Identities=14% Similarity=0.108 Sum_probs=135.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|+++||||+|+||.+++++|++.| ++|++++|+....
T Consensus 5 l~~k~vlVTGas~giG~~ia~~l~~~G---~~V~~~~r~~~~~------------------------------------- 44 (250)
T 2fwm_X 5 FSGKNVWVTGAGKGIGYATALAFVEAG---AKVTGFDQAFTQE------------------------------------- 44 (250)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCCCSS-------------------------------------
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCchhhh-------------------------------------
Confidence 567999999999999999999999999 8999999975310
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
. ..+.++.+|+++.+ .+..+++ ++|+||||||... ....++
T Consensus 45 ---------------~----~~~~~~~~D~~d~~------~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~ 99 (250)
T 2fwm_X 45 ---------------Q----YPFATEVMDVADAA------QVAQVCQRLLAETERLDALVNAAGILRMGATDQLSKEDWQ 99 (250)
T ss_dssp ---------------C----CSSEEEECCTTCHH------HHHHHHHHHHHHCSCCCEEEECCCCCCCCCTTTSCHHHHH
T ss_pred ---------------c----CCceEEEcCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHH
Confidence 0 12678899999976 6666664 6899999999743 234577
Q ss_pred HHHHHHHHHHHHHHHHHH----hcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 192 TAYNINVKGTQTILALAK----RMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~----~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
..+++|+.++..+++++. +. +..++|++||..++...
T Consensus 100 ~~~~~N~~g~~~~~~~~~~~m~~~-~~g~iv~isS~~~~~~~-------------------------------------- 140 (250)
T 2fwm_X 100 QTFAVNVGGAFNLFQQTMNQFRRQ-RGGAIVTVASDAAHTPR-------------------------------------- 140 (250)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCGGGTSCC--------------------------------------
T ss_pred HHHHHccHHHHHHHHHHHHHHHhc-CCCEEEEECchhhCCCC--------------------------------------
Confidence 899999999999888773 33 46799999998765221
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
+....|+.+|...+.+.+... +++++++++||.|+++....... . ............ ..+.......
T Consensus 141 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~-----~--~~~~~~~~~~~~-~~~~~~~p~~ 212 (250)
T 2fwm_X 141 IGMSAYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTDMQRTLWV-----S--DDAEEQRIRGFG-EQFKLGIPLG 212 (250)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC-----------------------------------------
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhCccCCEEEEEECCcccCcccccccc-----C--hhHHHHHHhhhh-hcccccCCCC
Confidence 012689999999999987765 58999999999999875421100 0 000000000000 0000011123
Q ss_pred CcccHHHHHHHHHHHHHhhh
Q psy17528 343 DVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~~ 362 (366)
.+...+|+|++++.++..+.
T Consensus 213 ~~~~p~dvA~~v~~l~s~~~ 232 (250)
T 2fwm_X 213 KIARPQEIANTILFLASDLA 232 (250)
T ss_dssp ---CHHHHHHHHHHHHSGGG
T ss_pred CCcCHHHHHHHHHHHhCccc
Confidence 47899999999999887653
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-18 Score=160.04 Aligned_cols=205 Identities=17% Similarity=0.132 Sum_probs=141.5
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
...++++||||||+|+||.+++++|++.| ++|++++|+... .+.+.+.
T Consensus 10 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G---~~V~~~~r~~~~---~~~~~~~-------------------------- 57 (249)
T 3f9i_A 10 IDLTGKTSLITGASSGIGSAIARLLHKLG---SKVIISGSNEEK---LKSLGNA-------------------------- 57 (249)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHH--------------------------
T ss_pred ccCCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEcCCHHH---HHHHHHH--------------------------
Confidence 44568999999999999999999999999 899999996421 1111110
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh---CcCEEEEcCcccC-------hhhhHHHH
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS---QTTIIFHIAATVR-------FDEHIRTA 193 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~---~~d~Vih~a~~~~-------~~~~~~~~ 193 (366)
....+.++.+|+.+.+ .+.++++ ++|++|||||... ....++..
T Consensus 58 --------------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~ 111 (249)
T 3f9i_A 58 --------------------LKDNYTIEVCNLANKE------ECSNLISKTSNLDILVCNAGITSDTLAIRMKDQDFDKV 111 (249)
T ss_dssp --------------------HCSSEEEEECCTTSHH------HHHHHHHTCSCCSEEEECCC-------------CHHHH
T ss_pred --------------------hccCccEEEcCCCCHH------HHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHH
Confidence 1246788899999876 7777776 6899999999753 12456788
Q ss_pred HHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCC
Q psy17528 194 YNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKP 270 (366)
Q Consensus 194 ~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (366)
+++|+.++..+++.+.+. .+..+||++||..++.... ..
T Consensus 112 ~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------------------------------------~~ 153 (249)
T 3f9i_A 112 IDINLKANFILNREAIKKMIQKRYGRIINISSIVGIAGNP--------------------------------------GQ 153 (249)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCC--CCS--------------------------------------CS
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcEEEEEccHHhccCCC--------------------------------------CC
Confidence 999999999888766431 2556999999987653211 11
Q ss_pred chHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcc
Q psy17528 271 NSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVV 345 (366)
Q Consensus 271 ~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v 345 (366)
..|+.+|...+.+++.+. +++++++++||.|.++...... ......... ......++
T Consensus 154 ~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~---------~~~~~~~~~---------~~~~~~~~ 215 (249)
T 3f9i_A 154 ANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTDKLN---------EKQREAIVQ---------KIPLGTYG 215 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBC------CC---------HHHHHHHHH---------HCTTCSCB
T ss_pred chhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCccccCcccccC---------HHHHHHHHh---------cCCCCCCc
Confidence 689999999888887655 6899999999999887543211 111111111 12235688
Q ss_pred cHHHHHHHHHHHHHhhh
Q psy17528 346 PGDRVINAMAALAWYFL 362 (366)
Q Consensus 346 ~vdDva~ai~~~~~~~~ 362 (366)
+++|+|++++.++....
T Consensus 216 ~~~dva~~~~~l~s~~~ 232 (249)
T 3f9i_A 216 IPEDVAYAVAFLASNNA 232 (249)
T ss_dssp CHHHHHHHHHHHHSGGG
T ss_pred CHHHHHHHHHHHcCCcc
Confidence 99999999999887654
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.2e-18 Score=155.51 Aligned_cols=202 Identities=14% Similarity=0.122 Sum_probs=137.7
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEE-EcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILL-IRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~-~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
+++|+||||+|+||.+++++|++.| ++|+++ .|+... .+.+.+. +..
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~G---~~v~~~~~r~~~~---~~~~~~~--------~~~------------------ 48 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAEDG---FALAIHYGQNREK---AEEVAEE--------ARR------------------ 48 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTT---CEEEEEESSCHHH---HHHHHHH--------HHH------------------
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEcCCCHHH---HHHHHHH--------HHh------------------
Confidence 4789999999999999999999998 788887 675321 1111111 111
Q ss_pred cccchhhhhhccccCCCCCCcEEE-EeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDI-VCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIR 191 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~-~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~ 191 (366)
...++.+ +.+|+.+.+ .+..+++ ++|+|||+||.... ...++
T Consensus 49 -----------------~~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~~d~li~~Ag~~~~~~~~~~~~~~~~ 105 (245)
T 2ph3_A 49 -----------------RGSPLVAVLGANLLEAE------AATALVHQAAEVLGGLDTLVNNAGITRDTLLVRMKDEDWE 105 (245)
T ss_dssp -----------------TTCSCEEEEECCTTSHH------HHHHHHHHHHHHHTCCCEEEECCCCCCCBCGGGCCHHHHH
T ss_pred -----------------cCCceEEEEeccCCCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHH
Confidence 1134555 889999876 5665543 78999999997531 34567
Q ss_pred HHHHHHHHHHHHHHH----HHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 192 TAYNINVKGTQTILA----LAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~----~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
..+++|+.++..+++ .+++. +.++||++||..++....
T Consensus 106 ~~~~~n~~g~~~l~~~~~~~~~~~-~~~~iv~~sS~~~~~~~~------------------------------------- 147 (245)
T 2ph3_A 106 AVLEANLSAVFRTTREAVKLMMKA-RFGRIVNITSVVGILGNP------------------------------------- 147 (245)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCTHHHHCCS-------------------------------------
T ss_pred HHHhhccHHHHHHHHHHHHHHHhc-CCCEEEEEeChhhccCCC-------------------------------------
Confidence 788999999555555 44444 568999999986542210
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
....|+.+|...+.+.+... .+++++++||+.++++..... . ..+........ ...
T Consensus 148 -~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~-------~--~~~~~~~~~~~---------~~~ 208 (245)
T 2ph3_A 148 -GQANYVASKAGLIGFTRAVAKEYAQRGITVNAVAPGFIETEMTERL-------P--QEVKEAYLKQI---------PAG 208 (245)
T ss_dssp -SBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTS-------C--HHHHHHHHHTC---------TTC
T ss_pred -CCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEEEeecCcchhhc-------C--HHHHHHHHhcC---------CCC
Confidence 01679999999888887655 589999999999988643211 1 11111111111 124
Q ss_pred CcccHHHHHHHHHHHHHhh
Q psy17528 343 DVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~ 361 (366)
.+++++|+|++++.++..+
T Consensus 209 ~~~~~~dva~~~~~l~~~~ 227 (245)
T 2ph3_A 209 RFGRPEEVAEAVAFLVSEK 227 (245)
T ss_dssp SCBCHHHHHHHHHHHTSGG
T ss_pred CCcCHHHHHHHHHHHhCcc
Confidence 5889999999999988764
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=4.2e-18 Score=157.09 Aligned_cols=206 Identities=12% Similarity=0.110 Sum_probs=147.4
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|+++||||+|+||++++++|++.| .+|++++|+... .+.+.+.+. .
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~~G---~~v~~~~r~~~~---~~~~~~~~~--------~----------------- 51 (247)
T 3lyl_A 3 LNEKVALVTGASRGIGFEVAHALASKG---ATVVGTATSQAS---AEKFENSMK--------E----------------- 51 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTT---CEEEEEESSHHH---HHHHHHHHH--------H-----------------
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHHHH--------h-----------------
Confidence 468999999999999999999999999 889999997432 122222111 1
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
...++.++.+|+++.+ .+..+++ ++|+||||||... ....++
T Consensus 52 ------------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~ 107 (247)
T 3lyl_A 52 ------------------KGFKARGLVLNISDIE------SIQNFFAEIKAENLAIDILVNNAGITRDNLMMRMSEDEWQ 107 (247)
T ss_dssp ------------------TTCCEEEEECCTTCHH------HHHHHHHHHHHTTCCCSEEEECCCCCCCCCGGGCCHHHHH
T ss_pred ------------------cCCceEEEEecCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHH
Confidence 1357889999999976 6666654 5799999999753 234567
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
..+++|+.++..+++.+.+. .+..++|++||..++....
T Consensus 108 ~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------------------------------------- 149 (247)
T 3lyl_A 108 SVINTNLSSIFRMSKECVRGMMKKRWGRIISIGSVVGSAGNP-------------------------------------- 149 (247)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCT--------------------------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhccCCC--------------------------------------
Confidence 88999999999988876431 2456999999986552211
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
....|+.+|...+.+.+.+. +++++++++||.|.++...... ........ .......
T Consensus 150 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~---------~~~~~~~~---------~~~~~~~ 211 (247)
T 3lyl_A 150 GQTNYCAAKAGVIGFSKSLAYEVASRNITVNVVAPGFIATDMTDKLT---------DEQKSFIA---------TKIPSGQ 211 (247)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTTSC---------HHHHHHHH---------TTSTTCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCcEecccchhcc---------HHHHHHHh---------hcCCCCC
Confidence 12789999998888876655 6899999999999987543221 11111111 1223456
Q ss_pred cccHHHHHHHHHHHHHhhh
Q psy17528 344 VVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~~~ 362 (366)
+.+++|+|++++.++....
T Consensus 212 ~~~~~dva~~i~~l~s~~~ 230 (247)
T 3lyl_A 212 IGEPKDIAAAVAFLASEEA 230 (247)
T ss_dssp CBCHHHHHHHHHHHHSGGG
T ss_pred CcCHHHHHHHHHHHhCCCc
Confidence 8899999999999886553
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.9e-18 Score=157.91 Aligned_cols=210 Identities=12% Similarity=0.119 Sum_probs=143.7
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|+||||||+|+||.+++++|++.| ++|++++|+... +.+.. ..
T Consensus 10 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~------~~~~~---------~~---------------- 55 (263)
T 3ak4_A 10 LSGRKAIVTGGSKGIGAAIARALDKAG---ATVAIADLDVMA------AQAVV---------AG---------------- 55 (263)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHH------HHHHH---------HT----------------
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEeCCHHH------HHHHH---------HH----------------
Confidence 568999999999999999999999998 899999997421 11110 00
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~ 191 (366)
. ..++.++.+|+++.+ .+..+++ ++|+||||||.... ...++
T Consensus 56 ---------------~---~~~~~~~~~D~~d~~------~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~ 111 (263)
T 3ak4_A 56 ---------------L---ENGGFAVEVDVTKRA------SVDAAMQKAIDALGGFDLLCANAGVSTMRPAVDITDEEWD 111 (263)
T ss_dssp ---------------C---TTCCEEEECCTTCHH------HHHHHHHHHHHHHTCCCEEEECCCCCCCCCGGGCCHHHHH
T ss_pred ---------------H---hcCCeEEEEeCCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHH
Confidence 1 125678899999976 6666665 79999999996431 24567
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CC-CcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 192 TAYNINVKGTQTILALAKRM---KG-LKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~---~~-~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
..+++|+.++..+++++.+. .+ ..++|++||..++....
T Consensus 112 ~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------------------------------- 154 (263)
T 3ak4_A 112 FNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKVGAP------------------------------------- 154 (263)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCCT-------------------------------------
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecccccccCCC-------------------------------------
Confidence 88999999999888876542 13 57999999986542210
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCcc---ccccchHHHHHHHHhcCcceeecCCCC
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLW---IKGFNGVMALALGAGTGLIRVVQTDPN 339 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~l~~~~~ 339 (366)
....|+.+|...+.+.+.+. ++++++++|||.|+++.......+ ..... .......... ..
T Consensus 155 -~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~-~~~~~~~~~~---------~~ 223 (263)
T 3ak4_A 155 -LLAHYSASKFAVFGWTQALAREMAPKNIRVNCVCPGFVKTAMQEREIIWEAELRGMT-PEAVRAEYVS---------LT 223 (263)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBTTHHHHHHHHHHHHHHTSC-HHHHHHHHHH---------TC
T ss_pred -CchhHHHHHHHHHHHHHHHHHHHhHcCeEEEEEecccccChhhhhhccccccccccC-cHHHHHHHHh---------cC
Confidence 11689999999999887765 589999999999998632100000 00000 0001111111 11
Q ss_pred cccCcccHHHHHHHHHHHHHhh
Q psy17528 340 ISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 340 ~~~~~v~vdDva~ai~~~~~~~ 361 (366)
....+++.+|+|++++.++..+
T Consensus 224 p~~~~~~~~dvA~~v~~l~s~~ 245 (263)
T 3ak4_A 224 PLGRIEEPEDVADVVVFLASDA 245 (263)
T ss_dssp TTCSCBCHHHHHHHHHHHHSGG
T ss_pred CCCCCcCHHHHHHHHHHHhCcc
Confidence 2345899999999999988765
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.4e-18 Score=159.28 Aligned_cols=209 Identities=15% Similarity=0.143 Sum_probs=145.4
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++|+|+||||+|+||.+++++|++.| ++|++++|+... .+.+.+ .+..
T Consensus 11 ~l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~---~~~~~~--------~l~~---------------- 60 (260)
T 2zat_A 11 PLENKVALVTASTDGIGLAIARRLAQDG---AHVVVSSRKQEN---VDRTVA--------TLQG---------------- 60 (260)
T ss_dssp TTTTCEEEESSCSSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHH--------HHHH----------------
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHH--------HHHh----------------
Confidence 3668999999999999999999999999 899999997421 111111 1111
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC--------hhhh
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR--------FDEH 189 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~--------~~~~ 189 (366)
...++.++.+|+.+.+ ++..+++ ++|+||||||... ....
T Consensus 61 -------------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~ 115 (260)
T 2zat_A 61 -------------------EGLSVTGTVCHVGKAE------DRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEV 115 (260)
T ss_dssp -------------------TTCCEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCBCGGGCCHHH
T ss_pred -------------------cCCceEEEEccCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHH
Confidence 1246788999999876 5665554 7899999999642 1245
Q ss_pred HHHHHHHHHHHHHHHHHHHHh---cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 190 IRTAYNINVKGTQTILALAKR---MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 190 ~~~~~~~nv~~~~~ll~~a~~---~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
++..+++|+.++..+++++.+ ..+.++||++||..++.... +
T Consensus 116 ~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------~-------------------------- 160 (260)
T 2zat_A 116 WDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPFP---------N-------------------------- 160 (260)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCCT---------T--------------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEechhhcCCCC---------C--------------------------
Confidence 677899999999888887642 12567999999987653211 0
Q ss_pred CCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcc
Q psy17528 267 GGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNIS 341 (366)
Q Consensus 267 ~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~ 341 (366)
...|+.+|...+.+.+... +++++++++||.|.++.... .+.. ......... ....
T Consensus 161 ---~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~--~~~~-----~~~~~~~~~---------~~~~ 221 (260)
T 2zat_A 161 ---LGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQV--LWMD-----KARKEYMKE---------SLRI 221 (260)
T ss_dssp ---BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSTTHH--HHSS-----HHHHHHHHH---------HHTC
T ss_pred ---chhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcccCccchh--cccC-----hHHHHHHHh---------cCCC
Confidence 1689999999999988765 58999999999998764310 0000 000000000 0112
Q ss_pred cCcccHHHHHHHHHHHHHhhh
Q psy17528 342 MDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 342 ~~~v~vdDva~ai~~~~~~~~ 362 (366)
..+++.+|+|++++.++....
T Consensus 222 ~~~~~~~dva~~v~~l~s~~~ 242 (260)
T 2zat_A 222 RRLGNPEDCAGIVSFLCSEDA 242 (260)
T ss_dssp SSCBCGGGGHHHHHHHTSGGG
T ss_pred CCCCCHHHHHHHHHHHcCccc
Confidence 458899999999999887654
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.4e-18 Score=159.42 Aligned_cols=204 Identities=14% Similarity=0.063 Sum_probs=144.4
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
..+++|++|||||+|+||.+++++|++.| .+|++++|+.. ++.+
T Consensus 12 ~~~~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~------~~~~--------------------------- 55 (266)
T 3p19_A 12 RGSMKKLVVITGASSGIGEAIARRFSEEG---HPLLLLARRVE------RLKA--------------------------- 55 (266)
T ss_dssp ---CCCEEEEESTTSHHHHHHHHHHHHTT---CCEEEEESCHH------HHHT---------------------------
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEECCHH------HHHH---------------------------
Confidence 34567999999999999999999999999 78999999732 1111
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhh
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEH 189 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~ 189 (366)
.....+.++.+|+++.+ .+..+++ ++|++|||||... ....
T Consensus 56 -------------------~~~~~~~~~~~Dv~d~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~ 110 (266)
T 3p19_A 56 -------------------LNLPNTLCAQVDVTDKY------TFDTAITRAEKIYGPADAIVNNAGMMLLGQIDTQEANE 110 (266)
T ss_dssp -------------------TCCTTEEEEECCTTCHH------HHHHHHHHHHHHHCSEEEEEECCCCCCCCCTTTSCHHH
T ss_pred -------------------hhcCCceEEEecCCCHH------HHHHHHHHHHHHCCCCCEEEECCCcCCCCCcccCCHHH
Confidence 01236789999999976 6666654 7899999999752 2345
Q ss_pred HHHHHHHHHHHHHHHHHHHH----hcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcc
Q psy17528 190 IRTAYNINVKGTQTILALAK----RMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHI 265 (366)
Q Consensus 190 ~~~~~~~nv~~~~~ll~~a~----~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (366)
++..+++|+.++..+.+.+. +. +..+||++||..++....
T Consensus 111 ~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~IV~isS~~~~~~~~----------------------------------- 154 (266)
T 3p19_A 111 WQRMFDVNVLGLLNGMQAVLAPMKAR-NCGTIINISSIAGKKTFP----------------------------------- 154 (266)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCGGGTSCCT-----------------------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcChhhCCCCC-----------------------------------
Confidence 67889999999998777654 33 557999999987652211
Q ss_pred cCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCc
Q psy17528 266 IGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNI 340 (366)
Q Consensus 266 ~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~ 340 (366)
....|+.+|...+.+.+.+. +|+++++++||.|.++...... . ........... ..
T Consensus 155 ---~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~---~--~~~~~~~~~~~-----------~~ 215 (266)
T 3p19_A 155 ---DHAAYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVKTELLSHTT---S--QQIKDGYDAWR-----------VD 215 (266)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCS---C--HHHHHHHHHHH-----------HH
T ss_pred ---CCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCccccchhhccc---c--hhhhHHHHhhc-----------cc
Confidence 11689999999998887665 6899999999999887432111 0 00000000000 01
Q ss_pred ccCcccHHHHHHHHHHHHHhhhh
Q psy17528 341 SMDVVPGDRVINAMAALAWYFLF 363 (366)
Q Consensus 341 ~~~~v~vdDva~ai~~~~~~~~~ 363 (366)
...+++.+|+|++++.++..+..
T Consensus 216 ~~r~~~pedvA~av~~l~~~~~~ 238 (266)
T 3p19_A 216 MGGVLAADDVARAVLFAYQQPQN 238 (266)
T ss_dssp TTCCBCHHHHHHHHHHHHHSCTT
T ss_pred ccCCCCHHHHHHHHHHHHcCCCC
Confidence 23478999999999999987654
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-17 Score=156.52 Aligned_cols=208 Identities=12% Similarity=0.168 Sum_probs=143.2
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
..+++++|+||||+|+||.+++++|++.| .+|+++.|+... .+.+.+. +..
T Consensus 40 ~~l~~k~vlITGasggIG~~la~~L~~~G---~~V~~~~r~~~~---~~~~~~~--------l~~--------------- 90 (285)
T 2c07_A 40 YCGENKVALVTGAGRGIGREIAKMLAKSV---SHVICISRTQKS---CDSVVDE--------IKS--------------- 90 (285)
T ss_dssp CCCSSCEEEEESTTSHHHHHHHHHHTTTS---SEEEEEESSHHH---HHHHHHH--------HHT---------------
T ss_pred ccCCCCEEEEECCCcHHHHHHHHHHHHcC---CEEEEEcCCHHH---HHHHHHH--------HHh---------------
Confidence 34568999999999999999999999998 889998876321 1111111 111
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhh
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEH 189 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~ 189 (366)
...++.++.+|+++.+ .+.++++ ++|+||||||... ....
T Consensus 91 --------------------~~~~~~~~~~Dl~d~~------~v~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~ 144 (285)
T 2c07_A 91 --------------------FGYESSGYAGDVSKKE------EISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDE 144 (285)
T ss_dssp --------------------TTCCEEEEECCTTCHH------HHHHHHHHHHHHCSCCCEEEECCCCCCCCCTTTCCHHH
T ss_pred --------------------cCCceeEEECCCCCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCchhhCCHHH
Confidence 1246889999999976 6666653 6899999999753 2345
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 190 IRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 190 ~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
++..+++|+.++..+++.+.+. .+.++||++||..++....
T Consensus 145 ~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~------------------------------------ 188 (285)
T 2c07_A 145 WEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGNV------------------------------------ 188 (285)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCT------------------------------------
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccCCC------------------------------------
Confidence 6788999999987777765421 2567999999986542210
Q ss_pred CCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcc
Q psy17528 267 GGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNIS 341 (366)
Q Consensus 267 ~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~ 341 (366)
....|+.+|...+.+++.+. .++++++++||.|.++..... . ..+........ ..
T Consensus 189 --~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~-------~--~~~~~~~~~~~---------~~ 248 (285)
T 2c07_A 189 --GQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKI-------S--EQIKKNIISNI---------PA 248 (285)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----C-------C--HHHHHHHHTTC---------TT
T ss_pred --CCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcEecCchhhc-------C--HHHHHHHHhhC---------CC
Confidence 11679999999988887655 589999999999998754211 1 11111111111 12
Q ss_pred cCcccHHHHHHHHHHHHHhhh
Q psy17528 342 MDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 342 ~~~v~vdDva~ai~~~~~~~~ 362 (366)
..+++++|+|++++.++....
T Consensus 249 ~~~~~~~dvA~~~~~l~~~~~ 269 (285)
T 2c07_A 249 GRMGTPEEVANLACFLSSDKS 269 (285)
T ss_dssp SSCBCHHHHHHHHHHHHSGGG
T ss_pred CCCCCHHHHHHHHHHHhCCCc
Confidence 348999999999999887643
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-17 Score=155.37 Aligned_cols=209 Identities=15% Similarity=0.108 Sum_probs=144.8
Q ss_pred cCCCCeEEEeCCcc-hHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 45 FYKDQTIFITGATG-FLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 45 ~~~~~~ilItGatG-~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
.+++++++||||+| .||.+++++|++.| ++|++++|+... .+.+.+. +..
T Consensus 19 ~l~~k~vlITGasg~GIG~~~a~~l~~~G---~~V~~~~r~~~~---~~~~~~~--------l~~--------------- 69 (266)
T 3o38_A 19 LLKGKVVLVTAAAGTGIGSTTARRALLEG---ADVVISDYHERR---LGETRDQ--------LAD--------------- 69 (266)
T ss_dssp TTTTCEEEESSCSSSSHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHH--------HHT---------------
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHCC---CEEEEecCCHHH---HHHHHHH--------HHh---------------
Confidence 46789999999998 59999999999999 889999997432 1111111 111
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhh
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEH 189 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~ 189 (366)
....++.++.+|+++.+ .+..+++ .+|+||||||... ....
T Consensus 70 -------------------~~~~~~~~~~~Dl~~~~------~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~ 124 (266)
T 3o38_A 70 -------------------LGLGRVEAVVCDVTSTE------AVDALITQTVEKAGRLDVLVNNAGLGGQTPVVDMTDEE 124 (266)
T ss_dssp -------------------TCSSCEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHH
T ss_pred -------------------cCCCceEEEEeCCCCHH------HHHHHHHHHHHHhCCCcEEEECCCcCCCCCcccCCHHH
Confidence 11357899999999976 6666554 6799999999743 2345
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc----CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcc
Q psy17528 190 IRTAYNINVKGTQTILALAKRM----KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHI 265 (366)
Q Consensus 190 ~~~~~~~nv~~~~~ll~~a~~~----~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (366)
++..+++|+.++..+++.+.+. ....+||++||...+....
T Consensus 125 ~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~----------------------------------- 169 (266)
T 3o38_A 125 WDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWRAQH----------------------------------- 169 (266)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGTCCCT-----------------------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHcCCCC-----------------------------------
Confidence 6788999999999998876542 2456899999987652211
Q ss_pred cCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCc
Q psy17528 266 IGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNI 340 (366)
Q Consensus 266 ~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~ 340 (366)
....|+.+|...+.+++.+. +++.+++++||.|.++....... ............
T Consensus 170 ---~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~-----------------~~~~~~~~~~~~ 229 (266)
T 3o38_A 170 ---SQSHYAAAKAGVMALTRCSAIEAVEFGVRINAVSPSIARHKFLEKTSS-----------------SELLDRLASDEA 229 (266)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC----------------------------------CCT
T ss_pred ---CCchHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCCcccchhhhccCc-----------------HHHHHHHHhcCC
Confidence 12689999999999987655 68999999999998864321100 000011112233
Q ss_pred ccCcccHHHHHHHHHHHHHhhh
Q psy17528 341 SMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 341 ~~~~v~vdDva~ai~~~~~~~~ 362 (366)
...+.+.+|+|++++.++....
T Consensus 230 ~~r~~~~~dva~~i~~l~s~~~ 251 (266)
T 3o38_A 230 FGRAAEPWEVAATIAFLASDYS 251 (266)
T ss_dssp TSSCCCHHHHHHHHHHHHSGGG
T ss_pred cCCCCCHHHHHHHHHHHcCccc
Confidence 4568899999999999887643
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-17 Score=155.96 Aligned_cols=207 Identities=14% Similarity=0.102 Sum_probs=147.1
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|+++||||+|+||.+++++|++.| .+|++++|+... .+.+.+. +..
T Consensus 8 l~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~---~~~~~~~--------l~~----------------- 56 (262)
T 3pk0_A 8 LQGRSVVVTGGTKGIGRGIATVFARAG---ANVAVAGRSTAD---IDACVAD--------LDQ----------------- 56 (262)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHH--------HHT-----------------
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHH--------HHh-----------------
Confidence 578999999999999999999999999 899999997432 1111111 111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
....++.++.+|+++.+ .+..+++ ++|++|||||... ....++
T Consensus 57 -----------------~~~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~ 113 (262)
T 3pk0_A 57 -----------------LGSGKVIGVQTDVSDRA------QCDALAGRAVEEFGGIDVVCANAGVFPDAPLATMTPEQLN 113 (262)
T ss_dssp -----------------TSSSCEEEEECCTTSHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCCCTTTCCHHHHH
T ss_pred -----------------hCCCcEEEEEcCCCCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHH
Confidence 01247889999999976 6666654 7899999999753 234567
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCccee-cCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 192 TAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCN-CDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~-~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
..+++|+.++..+.+++.+. .+..++|++||.... ...
T Consensus 114 ~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~-------------------------------------- 155 (262)
T 3pk0_A 114 GIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSITGPITGY-------------------------------------- 155 (262)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHSSCEEEEECCSBTTTBCC--------------------------------------
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCCC--------------------------------------
Confidence 78999999999888876542 245799999997642 111
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
+....|+.+|...+.+.+.+. +|+++++++||.|+++..... . ........... ...
T Consensus 156 ~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~-------~--~~~~~~~~~~~---------p~~ 217 (262)
T 3pk0_A 156 PGWSHYGATKAAQLGFMRTAAIELAPHKITVNAIMPGNIMTEGLLEN-------G--EEYIASMARSI---------PAG 217 (262)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHTT-------C--HHHHHHHHTTS---------TTS
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHHhhCcEEEEEEeCcCcCcccccc-------C--HHHHHHHHhcC---------CCC
Confidence 011689999999999988765 689999999999998643211 0 11222222221 123
Q ss_pred CcccHHHHHHHHHHHHHhhh
Q psy17528 343 DVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~~ 362 (366)
.+...+|+|++++.++....
T Consensus 218 r~~~p~dva~~v~~L~s~~~ 237 (262)
T 3pk0_A 218 ALGTPEDIGHLAAFLATKEA 237 (262)
T ss_dssp SCBCHHHHHHHHHHHHSGGG
T ss_pred CCcCHHHHHHHHHHHhCccc
Confidence 47889999999999886554
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-17 Score=155.45 Aligned_cols=199 Identities=14% Similarity=0.136 Sum_probs=139.7
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++++||||||+|+||.+++++|++.| .+|++++|+... .+.+.+.+ ..
T Consensus 26 ~l~~k~vlITGas~gIG~~la~~l~~~G---~~V~~~~r~~~~---~~~~~~~~--------~~---------------- 75 (262)
T 3rkr_A 26 SLSGQVAVVTGASRGIGAAIARKLGSLG---ARVVLTARDVEK---LRAVEREI--------VA---------------- 75 (262)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHHH--------HH----------------
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEECCHHH---HHHHHHHH--------HH----------------
Confidence 3678999999999999999999999998 789999997432 11222111 11
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC--------hhhh
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR--------FDEH 189 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~--------~~~~ 189 (366)
...++.++.+|+++.+ .+..+++ .+|+||||||... ....
T Consensus 76 -------------------~~~~~~~~~~D~~~~~------~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~ 130 (262)
T 3rkr_A 76 -------------------AGGEAESHACDLSHSD------AIAAFATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAE 130 (262)
T ss_dssp -------------------TTCEEEEEECCTTCHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCSSCGGGSCHHH
T ss_pred -------------------hCCceeEEEecCCCHH------HHHHHHHHHHHhcCCCCEEEECCCccCCCCCcccCCHHH
Confidence 1357889999999976 6666554 5899999999721 2345
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 190 IRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 190 ~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
++..+++|+.++..+++.+... .+..+||++||..++....
T Consensus 131 ~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------------------------------ 174 (262)
T 3rkr_A 131 WDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGKNPVA------------------------------------ 174 (262)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEEECSSCSSCCCT------------------------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCCC------------------------------------
Confidence 6778999999999988876431 2567999999987652211
Q ss_pred CCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcc
Q psy17528 267 GGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNIS 341 (366)
Q Consensus 267 ~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~ 341 (366)
....|+.+|...+.+++.+. .++++++++||.|.++...... .....
T Consensus 175 --~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~--------------------------~~~~~ 226 (262)
T 3rkr_A 175 --DGAAYTASKWGLNGLMTSAAEELRQHQVRVSLVAPGSVRTEFGVGLS--------------------------AKKSA 226 (262)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC----------------------------------------
T ss_pred --CCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCCcCCcccccc--------------------------ccccc
Confidence 11689999999999887655 6899999999998775321100 00112
Q ss_pred cCcccHHHHHHHHHHHHHhhh
Q psy17528 342 MDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 342 ~~~v~vdDva~ai~~~~~~~~ 362 (366)
..++..+|+|++++.++..+.
T Consensus 227 ~~~~~p~dvA~~v~~l~s~~~ 247 (262)
T 3rkr_A 227 LGAIEPDDIADVVALLATQAD 247 (262)
T ss_dssp --CCCHHHHHHHHHHHHTCCT
T ss_pred ccCCCHHHHHHHHHHHhcCcc
Confidence 346789999999999887654
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-17 Score=156.88 Aligned_cols=203 Identities=13% Similarity=0.128 Sum_probs=141.6
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++|++|||||+|+||.+++++|++.| .+|++++|+.. ++.+....
T Consensus 24 ~l~gk~vlVTGas~gIG~aia~~la~~G---~~V~~~~r~~~------~~~~~~~~------------------------ 70 (266)
T 3grp_A 24 KLTGRKALVTGATGGIGEAIARCFHAQG---AIVGLHGTRED------KLKEIAAD------------------------ 70 (266)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHHHHH------------------------
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHHHHH------------------------
Confidence 4678999999999999999999999999 89999998642 11111100
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHI 190 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~ 190 (366)
...++.++.+|+++.+ .+..+++ ++|++|||||... ....+
T Consensus 71 -------------------~~~~~~~~~~Dv~d~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~ 125 (266)
T 3grp_A 71 -------------------LGKDVFVFSANLSDRK------SIKQLAEVAEREMEGIDILVNNAGITRDGLFVRMQDQDW 125 (266)
T ss_dssp -------------------HCSSEEEEECCTTSHH------HHHHHHHHHHHHHTSCCEEEECCCCC-----CCCHHHHH
T ss_pred -------------------hCCceEEEEeecCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHH
Confidence 1247889999999986 6666654 7899999999753 23466
Q ss_pred HHHHHHHHHHHHHHHHHHH----hcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 191 RTAYNINVKGTQTILALAK----RMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~----~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
+..+++|+.++..+.+.+. +. +..+||++||..++....
T Consensus 126 ~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~Iv~isS~~~~~~~~------------------------------------ 168 (266)
T 3grp_A 126 DDVLAVNLTAASTLTRELIHSMMRR-RYGRIINITSIVGVVGNP------------------------------------ 168 (266)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCC-------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc-CCcEEEEECCHHHcCCCC------------------------------------
Confidence 7889999999776666543 33 557999999986552211
Q ss_pred CCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcc
Q psy17528 267 GGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNIS 341 (366)
Q Consensus 267 ~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~ 341 (366)
....|+.+|...+.+.+.+. +++++++++||.|.++..... . ......... ....
T Consensus 169 --~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~-------~--~~~~~~~~~---------~~p~ 228 (266)
T 3grp_A 169 --GQTNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIKSAMTDKL-------N--EKQKEAIMA---------MIPM 228 (266)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHTC-------C--HHHHHHHHT---------TCTT
T ss_pred --CchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCcCCCchhhcc-------C--HHHHHHHHh---------cCCC
Confidence 01679999998888877655 689999999999987632211 0 111111122 1223
Q ss_pred cCcccHHHHHHHHHHHHHhhh
Q psy17528 342 MDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 342 ~~~v~vdDva~ai~~~~~~~~ 362 (366)
..+...+|+|++++.++....
T Consensus 229 ~r~~~~edvA~~v~~L~s~~~ 249 (266)
T 3grp_A 229 KRMGIGEEIAFATVYLASDEA 249 (266)
T ss_dssp CSCBCHHHHHHHHHHHHSGGG
T ss_pred CCCcCHHHHHHHHHHHhCccc
Confidence 557889999999999887654
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.2e-18 Score=158.66 Aligned_cols=210 Identities=16% Similarity=0.162 Sum_probs=145.6
Q ss_pred cccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccc
Q psy17528 41 PIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIG 120 (366)
Q Consensus 41 ~~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (366)
+....+++|+||||||+|+||.+++++|++.| .+|++++|+....
T Consensus 7 ~~~~~~~~k~vlVTGas~GIG~aia~~l~~~G---~~V~~~~r~~~~~-------------------------------- 51 (269)
T 3vtz_A 7 HHMEEFTDKVAIVTGGSSGIGLAVVDALVRYG---AKVVSVSLDEKSD-------------------------------- 51 (269)
T ss_dssp ---CTTTTCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEESCC--C--------------------------------
T ss_pred ccccCCCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCCchhc--------------------------------
Confidence 44566789999999999999999999999999 8999999975421
Q ss_pred cccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------h
Q psy17528 121 ITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------F 186 (366)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~ 186 (366)
...+.++.+|+++.+ .+..+++ .+|++|||||... .
T Consensus 52 ------------------------~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~ 101 (269)
T 3vtz_A 52 ------------------------VNVSDHFKIDVTNEE------EVKEAVEKTTKKYGRIDILVNNAGIEQYSPLHLTP 101 (269)
T ss_dssp ------------------------TTSSEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGSC
T ss_pred ------------------------cCceeEEEecCCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCC
Confidence 125567899999976 6666654 7899999999743 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhh
Q psy17528 187 DEHIRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNE 263 (366)
Q Consensus 187 ~~~~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 263 (366)
...++..+++|+.++..+++++.+. .+..+||++||..++....
T Consensus 102 ~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------------------------------- 148 (269)
T 3vtz_A 102 TEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHGSIINIASVQSYAATK--------------------------------- 148 (269)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSBCT---------------------------------
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhccCCC---------------------------------
Confidence 2456778899999998888876431 2556999999987653211
Q ss_pred cccCCCCchHHHHHHHHHHHHHHhc----CCCCEEEEecCccccCCCCCCCcc--ccccchHHHHHHHHhcCcceeecCC
Q psy17528 264 HIIGGKPNSYTLTKATAEDLVRQVG----HELPICVLRPSIVFPTLQEPMPLW--IKGFNGVMALALGAGTGLIRVVQTD 337 (366)
Q Consensus 264 ~~~~~~~~~Y~~sK~~~E~~l~~~~----~gl~~~ilRp~~v~G~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~l~~~ 337 (366)
....|+.+|...+.+.+.+. .++.+++++||.|.++........ ............... .
T Consensus 149 -----~~~~Y~asKaa~~~l~~~la~e~~~~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 214 (269)
T 3vtz_A 149 -----NAAAYVTSKHALLGLTRSVAIDYAPKIRCNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIEEWG---------R 214 (269)
T ss_dssp -----TCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCHHHHHHHHHHHCCSTTHHHHHHHHHH---------H
T ss_pred -----CChhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEECCCcCcchhhhhhccccccchhhHHHHHHHH---------h
Confidence 12689999999999998766 579999999999987632100000 000000011111111 1
Q ss_pred CCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 338 PNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 338 ~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
......+.+.+|+|++++.++....
T Consensus 215 ~~p~~r~~~pedvA~~v~~L~s~~~ 239 (269)
T 3vtz_A 215 QHPMGRIGRPEEVAEVVAFLASDRS 239 (269)
T ss_dssp HSTTSSCBCHHHHHHHHHHHHSGGG
T ss_pred cCCCCCCcCHHHHHHHHHHHhCCcc
Confidence 1223567899999999999887653
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=156.98 Aligned_cols=204 Identities=17% Similarity=0.131 Sum_probs=142.5
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++||||||+|+||.+++++|++.| ++|++++|+...
T Consensus 6 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~-------------------------------------- 44 (264)
T 2dtx_A 6 LRDKVVIVTGASMGIGRAIAERFVDEG---SKVIDLSIHDPG-------------------------------------- 44 (264)
T ss_dssp GTTCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESSCCC--------------------------------------
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEecCccc--------------------------------------
Confidence 568999999999999999999999999 899999997531
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
..++.++.+|+++.+ .+..+++ ++|+||||||... ....++
T Consensus 45 -------------------~~~~~~~~~Dl~~~~------~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~ 99 (264)
T 2dtx_A 45 -------------------EAKYDHIECDVTNPD------QVKASIDHIFKEYGSISVLVNNAGIESYGKIESMSMGEWR 99 (264)
T ss_dssp -------------------SCSSEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHH
T ss_pred -------------------CCceEEEEecCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHH
Confidence 146788999999876 6666654 6899999999743 234567
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
..+++|+.++..+++.+.+. .+..+||++||..++....
T Consensus 100 ~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------------------------------------- 141 (264)
T 2dtx_A 100 RIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQASIITK-------------------------------------- 141 (264)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGTSCCT--------------------------------------
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCchhccCCC--------------------------------------
Confidence 89999999998888876542 2457999999987653211
Q ss_pred CCchHHHHHHHHHHHHHHhc----CCCCEEEEecCccccCCCCCCCccccccch--HHHHHHHHhcCcceeecCCCCccc
Q psy17528 269 KPNSYTLTKATAEDLVRQVG----HELPICVLRPSIVFPTLQEPMPLWIKGFNG--VMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
....|+.+|...+.+.+.+. ..+++++++||.|.++.............. .......... .....
T Consensus 142 ~~~~Y~~sK~a~~~~~~~la~e~~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~p~~ 212 (264)
T 2dtx_A 142 NASAYVTSKHAVIGLTKSIALDYAPLLRCNAVCPATIDTPLVRKAAELEVGSDPMRIEKKISEWGH---------EHPMQ 212 (264)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCSHHHHHHHHHHHCSCHHHHHHHHHHHHH---------HSTTS
T ss_pred CchhHHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCCCcCcchhhhhhcccccCchhhHHHHHHHHh---------cCCCC
Confidence 01689999999999987766 228999999999976521100000000000 0001111111 01124
Q ss_pred CcccHHHHHHHHHHHHHhhh
Q psy17528 343 DVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~~ 362 (366)
.+++.+|+|++++.++....
T Consensus 213 ~~~~p~dvA~~v~~l~s~~~ 232 (264)
T 2dtx_A 213 RIGKPQEVASAVAFLASREA 232 (264)
T ss_dssp SCBCHHHHHHHHHHHHSGGG
T ss_pred CCcCHHHHHHHHHHHhCchh
Confidence 58999999999999887543
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.3e-18 Score=160.63 Aligned_cols=212 Identities=13% Similarity=0.113 Sum_probs=145.3
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||.+++++|++.| .+|++++|+... .+.+.+. ++.
T Consensus 20 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~---~~~~~~~--------l~~----------------- 68 (277)
T 2rhc_B 20 QDSEVALVTGATSGIGLEIARRLGKEG---LRVFVCARGEEG---LRTTLKE--------LRE----------------- 68 (277)
T ss_dssp TTSCEEEEETCSSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHH--------HHH-----------------
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHH--------HHh-----------------
Confidence 568999999999999999999999998 889999997421 1111111 111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~ 191 (366)
...++.++.+|+++.+ .+..+++ ++|+||||||.... ...++
T Consensus 69 ------------------~~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~ 124 (277)
T 2rhc_B 69 ------------------AGVEADGRTCDVRSVP------EIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWL 124 (277)
T ss_dssp ------------------TTCCEEEEECCTTCHH------HHHHHHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHH
T ss_pred ------------------cCCceEEEECCCCCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHH
Confidence 1246888999999976 6666654 68999999996431 23567
Q ss_pred HHHHHHHHHHHHHHHHHHhc-----CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 192 TAYNINVKGTQTILALAKRM-----KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~-----~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
..+++|+.++..+++++.+. .+..+||++||..++... |
T Consensus 125 ~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~~~~~~~----------~-------------------------- 168 (277)
T 2rhc_B 125 DVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGV----------V-------------------------- 168 (277)
T ss_dssp HHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCGGGTSCC----------T--------------------------
T ss_pred HHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECccccccCC----------C--------------------------
Confidence 88999999999998886542 145799999998654211 0
Q ss_pred CCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccch-----HHHHHHHHhcCcceeecC
Q psy17528 267 GGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNG-----VMALALGAGTGLIRVVQT 336 (366)
Q Consensus 267 ~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~l~~ 336 (366)
....|+.+|...+.+.+.+. .++++++++||.|+++.... ....+.. ..........
T Consensus 169 --~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~---~~~~~~~~~~~~~~~~~~~~~~-------- 235 (277)
T 2rhc_B 169 --HAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAAS---VREHYSDIWEVSTEEAFDRITA-------- 235 (277)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEECSBCSHHHHH---HHHHHHHHHTCCHHHHHHHHHH--------
T ss_pred --CCccHHHHHHHHHHHHHHHHHHHHHhCcEEEEEecCcCcCchhhh---hhhhcccccccchHHHHHHHHh--------
Confidence 11679999999999887765 58999999999998763210 0000000 0000111110
Q ss_pred CCCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 337 DPNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 337 ~~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
......+++.+|+|++++.++..+.
T Consensus 236 -~~p~~r~~~~~dvA~~v~~l~s~~~ 260 (277)
T 2rhc_B 236 -RVPIGRYVQPSEVAEMVAYLIGPGA 260 (277)
T ss_dssp -HSTTSSCBCHHHHHHHHHHHHSGGG
T ss_pred -cCCCCCCcCHHHHHHHHHHHhCchh
Confidence 1123458999999999999887653
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-17 Score=154.33 Aligned_cols=205 Identities=14% Similarity=0.172 Sum_probs=142.1
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||.+++++|++.| ++|++++|.... ..+.+.+. +..
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G---~~V~~~~r~~~~--~~~~~~~~--------~~~----------------- 51 (246)
T 2uvd_A 2 LKGKVALVTGASRGIGRAIAIDLAKQG---ANVVVNYAGNEQ--KANEVVDE--------IKK----------------- 51 (246)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSCHH--HHHHHHHH--------HHH-----------------
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCCHH--HHHHHHHH--------HHh-----------------
Confidence 468999999999999999999999999 889999984211 11111111 111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~ 191 (366)
...++.++.+|+++.+ .+..+++ ++|++|||||.... ...++
T Consensus 52 ------------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~ 107 (246)
T 2uvd_A 52 ------------------LGSDAIAVRADVANAE------DVTNMVKQTVDVFGQVDILVNNAGVTKDNLLMRMKEEEWD 107 (246)
T ss_dssp ------------------TTCCEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHH
T ss_pred ------------------cCCcEEEEEcCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHH
Confidence 1246888999999976 6666654 78999999997531 24567
Q ss_pred HHHHHHHHHHHHHHHHHH----hcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 192 TAYNINVKGTQTILALAK----RMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~----~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
..+++|+.++..+.+.+. +. +.++||++||..++....
T Consensus 108 ~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~~~~------------------------------------- 149 (246)
T 2uvd_A 108 TVINTNLKGVFLCTKAVSRFMMRQ-RHGRIVNIASVVGVTGNP------------------------------------- 149 (246)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCTHHHHCCT-------------------------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEECCHHhcCCCC-------------------------------------
Confidence 889999999777666543 33 567999999986542210
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
....|+.+|...+.+.+... +++++++++||.|.++...... . . ......... ...
T Consensus 150 -~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~---~---~---~~~~~~~~~---------p~~ 210 (246)
T 2uvd_A 150 -GQANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIATDMTDVLD---E---N---IKAEMLKLI---------PAA 210 (246)
T ss_dssp -TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCSSCCC---T---T---HHHHHHHTC---------TTC
T ss_pred -CCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeccccCcchhhcC---H---H---HHHHHHhcC---------CCC
Confidence 01679999999888876654 6899999999999887533211 0 0 011111111 123
Q ss_pred CcccHHHHHHHHHHHHHhh
Q psy17528 343 DVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~ 361 (366)
.+++.+|+|++++.++...
T Consensus 211 ~~~~~~dvA~~~~~l~s~~ 229 (246)
T 2uvd_A 211 QFGEAQDIANAVTFFASDQ 229 (246)
T ss_dssp SCBCHHHHHHHHHHHHSGG
T ss_pred CCcCHHHHHHHHHHHcCch
Confidence 4889999999999988654
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.5e-17 Score=155.03 Aligned_cols=232 Identities=13% Similarity=0.081 Sum_probs=151.5
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcC------HHHHHHHHhhhhhhhhhhhcCCCCCCccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTS------ITQRVYNYFNDAVFDRMRLECPNYADKVD 118 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 118 (366)
.+++|+||||||+|+||.+++++|++.| .+|++++|+..... ..+++.+... .+
T Consensus 7 ~l~gk~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~------------ 66 (287)
T 3pxx_A 7 RVQDKVVLVTGGARGQGRSHAVKLAEEG---ADIILFDICHDIETNEYPLATSRDLEEAGL-----EV------------ 66 (287)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCSCCTTSCSCCCCHHHHHHHHH-----HH------------
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCC---CeEEEEcccccccccccchhhhHHHHHHHH-----HH------------
Confidence 4678999999999999999999999999 89999999743211 0111111110 01
Q ss_pred cccccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-----
Q psy17528 119 IGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF----- 186 (366)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~----- 186 (366)
.....++.++.+|+++.+ .+.++++ ++|++|||||....
T Consensus 67 -----------------------~~~~~~~~~~~~D~~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~ 117 (287)
T 3pxx_A 67 -----------------------EKTGRKAYTAEVDVRDRA------AVSRELANAVAEFGKLDVVVANAGICPLGAHLP 117 (287)
T ss_dssp -----------------------HHTTSCEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCC
T ss_pred -----------------------HhcCCceEEEEccCCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCcccCcCC
Confidence 112357889999999976 6666554 78999999997532
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhh
Q psy17528 187 DEHIRTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNE 263 (366)
Q Consensus 187 ~~~~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 263 (366)
...++..+++|+.++..+++.+.+. ....++|++||..++.... +..+....
T Consensus 118 ~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~~~~~------------------------- 172 (287)
T 3pxx_A 118 VQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVAGLIAAAQPPGAGGPQG------------------------- 172 (287)
T ss_dssp THHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHHHHHHHHCCC-----CH-------------------------
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccchhcccccccccccccCC-------------------------
Confidence 3567889999999999999988764 2345899999986653211 11111000
Q ss_pred cccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccc---ccc--chHHHHHHHHhcCccee
Q psy17528 264 HIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWI---KGF--NGVMALALGAGTGLIRV 333 (366)
Q Consensus 264 ~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~---~~~--~~~~~~~~~~~~g~~~~ 333 (366)
+....|+.+|...+.+.+.+. +++++++++||.|.++.....+.+. ... .........
T Consensus 173 ----~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 240 (287)
T 3pxx_A 173 ----PGGAGYSYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDMLNSAPMYRQFRPDLEAPSRADALLA-------- 240 (287)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESSBSSTTTSSHHHHHHHCTTSSSCCHHHHHHH--------
T ss_pred ----CccchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCccccccccccchhhhhccccccchhHHHHhh--------
Confidence 001679999999999887766 5899999999999987653211000 000 000000000
Q ss_pred ecCCCCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 334 VQTDPNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 334 l~~~~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
..........+++.+|+|++++.++...+
T Consensus 241 ~~~~~~~~~~~~~p~dva~~v~fL~s~~a 269 (287)
T 3pxx_A 241 FPAMQAMPTPYVEASDISNAVCFLASDES 269 (287)
T ss_dssp GGGGCSSSCSCBCHHHHHHHHHHHHSGGG
T ss_pred hhhhcccCCCCCCHHHHHhhHheecchhh
Confidence 00011111578999999999999886543
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-17 Score=155.39 Aligned_cols=207 Identities=13% Similarity=0.082 Sum_probs=145.4
Q ss_pred cCCCCeEEEeCCc--chHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccc
Q psy17528 45 FYKDQTIFITGAT--GFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGIT 122 (366)
Q Consensus 45 ~~~~~~ilItGat--G~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (366)
.+++|+++||||+ |+||.+++++|++.| ++|++++|+.. ..+.+.++. ..
T Consensus 5 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G---~~V~~~~r~~~---~~~~~~~l~---------~~------------- 56 (261)
T 2wyu_A 5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAG---AEVALSYQAER---LRPEAEKLA---------EA------------- 56 (261)
T ss_dssp CCTTCEEEEESCCSSSSHHHHHHHHHHHHT---CEEEEEESCGG---GHHHHHHHH---------HH-------------
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHCC---CEEEEEcCCHH---HHHHHHHHH---------Hh-------------
Confidence 3568999999999 999999999999999 88999999752 122222211 10
Q ss_pred cccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh---------
Q psy17528 123 HRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF--------- 186 (366)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~--------- 186 (366)
. ..+.++.+|+++.+ .+..+++ ++|+||||||....
T Consensus 57 ------------------~----~~~~~~~~D~~~~~------~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~ 108 (261)
T 2wyu_A 57 ------------------L----GGALLFRADVTQDE------ELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYID 108 (261)
T ss_dssp ------------------T----TCCEEEECCTTCHH------HHHHHHHHHHHHHSSEEEEEECCCCCCHHHHSSCGGG
T ss_pred ------------------c----CCcEEEECCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCcccCCCCccc
Confidence 1 23678899999976 6666554 68999999997532
Q ss_pred --hhhHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhh
Q psy17528 187 --DEHIRTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNE 263 (366)
Q Consensus 187 --~~~~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 263 (366)
...++..+++|+.++..+++++.+. ....+||++||..++....
T Consensus 109 ~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~--------------------------------- 155 (261)
T 2wyu_A 109 TRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVP--------------------------------- 155 (261)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTSBCT---------------------------------
T ss_pred CCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEecccccCCCC---------------------------------
Confidence 2456788999999999999988763 1125899999976542110
Q ss_pred cccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCC
Q psy17528 264 HIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDP 338 (366)
Q Consensus 264 ~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~ 338 (366)
....|+.+|...+.+.+.+. +++++++++||.|+++...... ....+........
T Consensus 156 -----~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~-------~~~~~~~~~~~~~-------- 215 (261)
T 2wyu_A 156 -----KYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIP-------GFTKMYDRVAQTA-------- 215 (261)
T ss_dssp -----TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCTGGGGCT-------THHHHHHHHHHHS--------
T ss_pred -----CchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCCCcCchhhhcc-------ccHHHHHHHHhcC--------
Confidence 01679999999999987765 5899999999999987532111 1111111111111
Q ss_pred CcccCcccHHHHHHHHHHHHHhh
Q psy17528 339 NISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 339 ~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
....+.+++|+|++++.++...
T Consensus 216 -p~~~~~~~~dva~~v~~l~s~~ 237 (261)
T 2wyu_A 216 -PLRRNITQEEVGNLGLFLLSPL 237 (261)
T ss_dssp -TTSSCCCHHHHHHHHHHHHSGG
T ss_pred -CCCCCCCHHHHHHHHHHHcChh
Confidence 1234678999999999988654
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=156.00 Aligned_cols=217 Identities=15% Similarity=0.089 Sum_probs=142.2
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|+|+||||+|+||.+++++|++.| .+|++++|+... ..+.+.+.+. ..
T Consensus 2 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~--~~~~~~~~~~--------~~---------------- 52 (260)
T 1x1t_A 2 LKGKVAVVTGSTSGIGLGIATALAAQG---ADIVLNGFGDAA--EIEKVRAGLA--------AQ---------------- 52 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEECCSCHH--HHHHHHHHHH--------HH----------------
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHcC---CEEEEEeCCcch--HHHHHHHHHH--------hc----------------
Confidence 468999999999999999999999999 889999997531 0111211111 00
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
...++.++.+|+++.+ .+..+++ ++|++|||||... ....++
T Consensus 53 ------------------~~~~~~~~~~D~~~~~------~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~ 108 (260)
T 1x1t_A 53 ------------------HGVKVLYDGADLSKGE------AVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWD 108 (260)
T ss_dssp ------------------HTSCEEEECCCTTSHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHH
T ss_pred ------------------cCCcEEEEECCCCCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHH
Confidence 0246788999999976 6666654 6899999999643 234567
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
..+++|+.++..+++.+.+. .+..+||++||..++....
T Consensus 109 ~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------------------------------------- 150 (260)
T 1x1t_A 109 AILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVASA-------------------------------------- 150 (260)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT--------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECcHHhCcCCC--------------------------------------
Confidence 88999999998888876431 2457999999986652210
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCc-cccccc-hHHHHHHHHhcCcceeecCCCCcc
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPL-WIKGFN-GVMALALGAGTGLIRVVQTDPNIS 341 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~-~~~~~~-~~~~~~~~~~~g~~~~l~~~~~~~ 341 (366)
....|+.+|...+.+.+.+. +++++++++||.|.++....... ...... ........ +.......
T Consensus 151 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~p~ 222 (260)
T 1x1t_A 151 NKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARE--------LLSEKQPS 222 (260)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC--------------------------------CHHHHCTT
T ss_pred CCchHHHHHHHHHHHHHHHHHHhccCCEEEEEEeecCccCchHHHhhhhhccccCCchHHHHHH--------HhhccCCC
Confidence 11689999999999887655 58999999999999875431100 000000 00000000 00000112
Q ss_pred cCcccHHHHHHHHHHHHHhh
Q psy17528 342 MDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 342 ~~~v~vdDva~ai~~~~~~~ 361 (366)
..+++.+|+|++++.++...
T Consensus 223 ~~~~~p~dva~~~~~l~s~~ 242 (260)
T 1x1t_A 223 LQFVTPEQLGGTAVFLASDA 242 (260)
T ss_dssp CCCBCHHHHHHHHHHHHSGG
T ss_pred CCCcCHHHHHHHHHHHhChh
Confidence 45889999999999988654
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.5e-17 Score=152.89 Aligned_cols=214 Identities=17% Similarity=0.099 Sum_probs=146.5
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
++++++|||||+|+||.+++++|++.| .+|++++|+... .+.+.+.
T Consensus 26 ~~~k~~lVTGas~GIG~aia~~la~~G---~~V~~~~r~~~~---~~~~~~~---------------------------- 71 (283)
T 3v8b_A 26 QPSPVALITGAGSGIGRATALALAADG---VTVGALGRTRTE---VEEVADE---------------------------- 71 (283)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESSHHH---HHHHHHH----------------------------
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHH----------------------------
Confidence 467999999999999999999999999 899999997421 1111111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC--------hhhhH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR--------FDEHI 190 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~--------~~~~~ 190 (366)
......++.++.+|+++.+ .+..+++ ++|++|||||... ....+
T Consensus 72 ---------------l~~~~~~~~~~~~Dv~d~~------~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~ 130 (283)
T 3v8b_A 72 ---------------IVGAGGQAIALEADVSDEL------QMRNAVRDLVLKFGHLDIVVANAGINGVWAPIDDLKPFEW 130 (283)
T ss_dssp ---------------HTTTTCCEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCBCCTTTSCHHHH
T ss_pred ---------------HHhcCCcEEEEEccCCCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHH
Confidence 1112357889999999976 6666554 6899999999742 12456
Q ss_pred HHHHHHHHHHHHHHHHHH----HhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 191 RTAYNINVKGTQTILALA----KRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a----~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
+..+++|+.++..+++++ ++. +..++|++||..++... +.
T Consensus 131 ~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~Iv~isS~~~~~~~--------~~--------------------------- 174 (283)
T 3v8b_A 131 DETIAVNLRGTFLTLHLTVPYLKQR-GGGAIVVVSSINGTRTF--------TT--------------------------- 174 (283)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCSBTTTBC--------CS---------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHc-CCceEEEEcChhhccCC--------CC---------------------------
Confidence 788999999999988877 333 55799999997654210 00
Q ss_pred CCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcc
Q psy17528 267 GGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNIS 341 (366)
Q Consensus 267 ~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~ 341 (366)
+....|+.+|...+.+.+.+. +++.+++++||.|.++........ . . ................
T Consensus 175 -~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~----~--~-----~~~~~~~~~~~~~~p~ 242 (283)
T 3v8b_A 175 -PGATAYTATKAAQVAIVQQLALELGKHHIRVNAVCPGAIETNISDNTKLR----H--E-----EETAIPVEWPKGQVPI 242 (283)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECSBSSCTTCCTTBC----C--H-----HHHSCCCBCTTCSCGG
T ss_pred -CCchHHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCcCCcccccccc----c--c-----hhhhhhhhhhhhcCcc
Confidence 012689999999999887765 689999999999988754321100 0 0 0000001111111111
Q ss_pred --cCcccHHHHHHHHHHHHHhhh
Q psy17528 342 --MDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 342 --~~~v~vdDva~ai~~~~~~~~ 362 (366)
..+...+|+|++++.++...+
T Consensus 243 ~~~r~~~pedvA~~v~fL~s~~a 265 (283)
T 3v8b_A 243 TDGQPGRSEDVAELIRFLVSERA 265 (283)
T ss_dssp GTTCCBCHHHHHHHHHHHTSGGG
T ss_pred ccCCCCCHHHHHHHHHHHcCccc
Confidence 457789999999999886544
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=99.77 E-value=5.5e-18 Score=157.37 Aligned_cols=203 Identities=14% Similarity=0.143 Sum_probs=145.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|+++||||+|+||.+++++|++.| .+|++++|+... .+.+.+.+
T Consensus 7 l~gk~~lVTGas~gIG~a~a~~l~~~G---~~V~~~~r~~~~---~~~~~~~~--------------------------- 53 (248)
T 3op4_A 7 LEGKVALVTGASRGIGKAIAELLAERG---AKVIGTATSESG---AQAISDYL--------------------------- 53 (248)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTT---CEEEEEESSHHH---HHHHHHHH---------------------------
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHHh---------------------------
Confidence 568999999999999999999999999 899999997431 12221111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
.....++.+|+++.+ ++..+++ ++|++|||||... ....++
T Consensus 54 -------------------~~~~~~~~~Dv~d~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~ 108 (248)
T 3op4_A 54 -------------------GDNGKGMALNVTNPE------SIEAVLKAITDEFGGVDILVNNAGITRDNLLMRMKEEEWS 108 (248)
T ss_dssp -------------------GGGEEEEECCTTCHH------HHHHHHHHHHHHHCCCSEEEECCCCCCCCCGGGCCHHHHH
T ss_pred -------------------cccceEEEEeCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHH
Confidence 134678899999976 6666664 7899999999753 234667
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
..+++|+.++..+.+++.+. .+..++|++||...+... +
T Consensus 109 ~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~--------------------------------------~ 150 (248)
T 3op4_A 109 DIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGN--------------------------------------A 150 (248)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC--------------------------------------T
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcCCC--------------------------------------C
Confidence 88999999999998876431 245799999997654221 1
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
....|+.+|...+.+.+... +++++++++||.|.++...... .......... .....
T Consensus 151 ~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~---------~~~~~~~~~~---------~p~~r 212 (248)
T 3op4_A 151 GQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTKALN---------DEQRTATLAQ---------VPAGR 212 (248)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSTTTTTSC---------HHHHHHHHHT---------CTTCS
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEeeCCCCCchhhhcC---------HHHHHHHHhc---------CCCCC
Confidence 12689999998888877655 6899999999999887543211 1111111111 12345
Q ss_pred cccHHHHHHHHHHHHHhhh
Q psy17528 344 VVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~~~ 362 (366)
+.+.+|+|++++.++....
T Consensus 213 ~~~p~dva~~v~~L~s~~~ 231 (248)
T 3op4_A 213 LGDPREIASAVAFLASPEA 231 (248)
T ss_dssp CBCHHHHHHHHHHHHSGGG
T ss_pred CcCHHHHHHHHHHHcCCcc
Confidence 8899999999999886543
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-17 Score=157.17 Aligned_cols=210 Identities=12% Similarity=0.091 Sum_probs=137.7
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
..+++++++||||+|+||.+++++|++.| .+|++++|+... ..+.+.+.+ ..
T Consensus 25 ~~~~~k~~lVTGas~GIG~aia~~la~~G---~~V~~~~~~~~~--~~~~~~~~~--------~~--------------- 76 (280)
T 4da9_A 25 TQKARPVAIVTGGRRGIGLGIARALAASG---FDIAITGIGDAE--GVAPVIAEL--------SG--------------- 76 (280)
T ss_dssp SCCCCCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCCHH--HHHHHHHHH--------HH---------------
T ss_pred hccCCCEEEEecCCCHHHHHHHHHHHHCC---CeEEEEeCCCHH--HHHHHHHHH--------Hh---------------
Confidence 34668999999999999999999999999 899999875321 111211111 11
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC---------hh
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR---------FD 187 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~---------~~ 187 (366)
...++.++.+|+++.+ .+..+++ ++|++|||||... ..
T Consensus 77 --------------------~~~~~~~~~~Dv~d~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~ 130 (280)
T 4da9_A 77 --------------------LGARVIFLRADLADLS------SHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKP 130 (280)
T ss_dssp --------------------TTCCEEEEECCTTSGG------GHHHHHHHHHHHHSCCCEEEEECC------CCGGGCCH
T ss_pred --------------------cCCcEEEEEecCCCHH------HHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCH
Confidence 1357889999999987 5666554 7899999999731 23
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhc----C--CCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhh
Q psy17528 188 EHIRTAYNINVKGTQTILALAKRM----K--GLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALL 261 (366)
Q Consensus 188 ~~~~~~~~~nv~~~~~ll~~a~~~----~--~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~ 261 (366)
..++..+++|+.++..+++.+.+. + ...+||++||..++....
T Consensus 131 ~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~------------------------------- 179 (280)
T 4da9_A 131 ENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVMTSP------------------------------- 179 (280)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC--------------------------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhccCCC-------------------------------
Confidence 456778899999998888776432 1 146899999986652210
Q ss_pred hhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecC
Q psy17528 262 NEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQT 336 (366)
Q Consensus 262 ~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~ 336 (366)
....|+.+|...+.+.+.+. +++++++++||.|.++....... ..... +..
T Consensus 180 -------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~---------~~~~~--------~~~ 235 (280)
T 4da9_A 180 -------ERLDYCMSKAGLAAFSQGLALRLAETGIAVFEVRPGIIRSDMTAAVSG---------KYDGL--------IES 235 (280)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC---------------------------------
T ss_pred -------CccHHHHHHHHHHHHHHHHHHHHHHhCcEEEEEeecCCcCCchhhcch---------hHHHH--------Hhh
Confidence 11679999999999887765 68999999999998875432110 00000 000
Q ss_pred CCCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 337 DPNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 337 ~~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
.......+...+|+|++++.++....
T Consensus 236 ~~~p~~r~~~pedvA~~v~~L~s~~~ 261 (280)
T 4da9_A 236 GLVPMRRWGEPEDIGNIVAGLAGGQF 261 (280)
T ss_dssp ------CCBCHHHHHHHHHHHHTSTT
T ss_pred cCCCcCCcCCHHHHHHHHHHHhCccc
Confidence 01223457889999999999887554
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.6e-17 Score=154.42 Aligned_cols=205 Identities=12% Similarity=0.123 Sum_probs=142.7
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++|+||||+|+||.+++++|++.| ++|++++|+.... +.+.+.+..
T Consensus 32 l~~k~vlITGasggIG~~la~~L~~~G---~~V~~~~r~~~~~---~~~~~~~~~------------------------- 80 (279)
T 3ctm_A 32 LKGKVASVTGSSGGIGWAVAEAYAQAG---ADVAIWYNSHPAD---EKAEHLQKT------------------------- 80 (279)
T ss_dssp CTTCEEEETTTTSSHHHHHHHHHHHHT---CEEEEEESSSCCH---HHHHHHHHH-------------------------
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHH---HHHHHHHHh-------------------------
Confidence 568999999999999999999999998 8899999986432 222221110
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh---------hhh
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF---------DEH 189 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~---------~~~ 189 (366)
...++.++.+|+.+.+ .+.++++ .+|+|||+||.... ...
T Consensus 81 ------------------~~~~~~~~~~Dl~~~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~ 136 (279)
T 3ctm_A 81 ------------------YGVHSKAYKCNISDPK------SVEETISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDS 136 (279)
T ss_dssp ------------------HCSCEEEEECCTTCHH------HHHHHHHHHHHHHSCCSEEEECGGGSTTC--CCCSSHHHH
T ss_pred ------------------cCCcceEEEeecCCHH------HHHHHHHHHHHHhCCCCEEEECCcccccCCcccccCCHHH
Confidence 1246889999999876 6666654 48999999996532 134
Q ss_pred HHHHHHHHHHHH----HHHHHHHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcc
Q psy17528 190 IRTAYNINVKGT----QTILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHI 265 (366)
Q Consensus 190 ~~~~~~~nv~~~----~~ll~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (366)
++..+++|+.++ +.+++.+++. +.++||++||..++.... .++
T Consensus 137 ~~~~~~~N~~g~~~~~~~~~~~~~~~-~~~~iv~isS~~~~~~~~-------~~~------------------------- 183 (279)
T 3ctm_A 137 WNKIISVDLNGVYYCSHNIGKIFKKN-GKGSLIITSSISGKIVNI-------PQL------------------------- 183 (279)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCCTTSCC----------CC-------------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhc-CCCeEEEECchHhccCCC-------CCC-------------------------
Confidence 567889999994 5566666654 567999999986542200 000
Q ss_pred cCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCc
Q psy17528 266 IGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNI 340 (366)
Q Consensus 266 ~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~ 340 (366)
...|+.+|...|.+++.+. ++ .+++++||.|.++..... . .......... ..
T Consensus 184 ----~~~Y~~sK~a~~~~~~~la~e~~~~~-~v~~v~Pg~v~t~~~~~~-------~--~~~~~~~~~~---------~p 240 (279)
T 3ctm_A 184 ----QAPYNTAKAACTHLAKSLAIEWAPFA-RVNTISPGYIDTDITDFA-------S--KDMKAKWWQL---------TP 240 (279)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHTTTTC-EEEEEEECSBSSTTTSSC-------C--HHHHHHHHHH---------ST
T ss_pred ----cccHHHHHHHHHHHHHHHHHHhcccC-CEEEEeccCCcccccccc-------C--hHHHHHHHHh---------CC
Confidence 1679999999999998765 46 899999999988754211 0 1111111110 01
Q ss_pred ccCcccHHHHHHHHHHHHHhh
Q psy17528 341 SMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 341 ~~~~v~vdDva~ai~~~~~~~ 361 (366)
...+++.+|+|++++.++...
T Consensus 241 ~~~~~~~~dvA~~~~~l~s~~ 261 (279)
T 3ctm_A 241 LGREGLTQELVGGYLYLASNA 261 (279)
T ss_dssp TCSCBCGGGTHHHHHHHHSGG
T ss_pred ccCCcCHHHHHHHHHHHhCcc
Confidence 234889999999999988764
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=156.72 Aligned_cols=218 Identities=15% Similarity=0.174 Sum_probs=148.2
Q ss_pred cccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccc
Q psy17528 43 QEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGIT 122 (366)
Q Consensus 43 ~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (366)
...+++|++|||||+|+||.+++++|++.| .+|++++|+... .+.+.+. +..
T Consensus 6 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~---~~~~~~~--------~~~-------------- 57 (264)
T 3ucx_A 6 GGLLTDKVVVISGVGPALGTTLARRCAEQG---ADLVLAARTVER---LEDVAKQ--------VTD-------------- 57 (264)
T ss_dssp -CTTTTCEEEEESCCTTHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHH--------HHH--------------
T ss_pred CCCcCCcEEEEECCCcHHHHHHHHHHHHCc---CEEEEEeCCHHH---HHHHHHH--------HHh--------------
Confidence 345789999999999999999999999999 889999997421 1122111 111
Q ss_pred cccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC--------hh
Q psy17528 123 HRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR--------FD 187 (366)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~--------~~ 187 (366)
...++.++.+|+++.+ .+..+++ ++|++|||||... ..
T Consensus 58 ---------------------~~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~ 110 (264)
T 3ucx_A 58 ---------------------TGRRALSVGTDITDDA------QVAHLVDETMKAYGRVDVVINNAFRVPSMKPFANTTF 110 (264)
T ss_dssp ---------------------TTCCEEEEECCTTCHH------HHHHHHHHHHHHTSCCSEEEECCCSCCCCCCGGGCCH
T ss_pred ---------------------cCCcEEEEEcCCCCHH------HHHHHHHHHHHHcCCCcEEEECCCCCCCCCCchhCCH
Confidence 1357889999999987 6666654 6899999998742 12
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhc--CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcc
Q psy17528 188 EHIRTAYNINVKGTQTILALAKRM--KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHI 265 (366)
Q Consensus 188 ~~~~~~~~~nv~~~~~ll~~a~~~--~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (366)
..++..+++|+.++..+++.+.+. ....++|++||..++....
T Consensus 111 ~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~----------------------------------- 155 (264)
T 3ucx_A 111 EHMRDAIELTVFGALRLIQGFTPALEESKGAVVNVNSMVVRHSQA----------------------------------- 155 (264)
T ss_dssp HHHHHHHHHHTHHHHHHHHHTHHHHHHHTCEEEEECCGGGGCCCT-----------------------------------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEECcchhccCCC-----------------------------------
Confidence 456788999999999988875432 0125999999986552211
Q ss_pred cCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCcccc-cc-chHHHHHHHHhcCcceeecCCC
Q psy17528 266 IGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIK-GF-NGVMALALGAGTGLIRVVQTDP 338 (366)
Q Consensus 266 ~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~-~~-~~~~~~~~~~~~g~~~~l~~~~ 338 (366)
....|+.+|...+.+.+.+. +++++++++||.|+++.......... .. .....+.... ...
T Consensus 156 ---~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 223 (264)
T 3ucx_A 156 ---KYGAYKMAKSALLAMSQTLATELGEKGIRVNSVLPGYIWGGTLKSYFEHQAGKYGTSVEDIYNAA---------AAG 223 (264)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSCBSHHHHHHHHHHHHHTTCCHHHHHHHH---------HTT
T ss_pred ---ccHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccccHHHHHHhhhhhcCCCHHHHHHHH---------hcc
Confidence 11689999999999887665 68999999999998864311000000 00 0001111111 122
Q ss_pred CcccCcccHHHHHHHHHHHHHhhh
Q psy17528 339 NISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 339 ~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
.....+.+.+|+|++++.++....
T Consensus 224 ~p~~r~~~p~dvA~~v~~L~s~~~ 247 (264)
T 3ucx_A 224 SDLKRLPTEDEVASAILFMASDLA 247 (264)
T ss_dssp SSSSSCCBHHHHHHHHHHHHSGGG
T ss_pred CCcccCCCHHHHHHHHHHHcCccc
Confidence 334568899999999999886543
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=155.93 Aligned_cols=218 Identities=14% Similarity=0.121 Sum_probs=143.4
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++|+||||+|+||.+++++|++.| ++|++++|+... .+.+.+.+. ..
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~---~~~~~~~~~--------~~---------------- 54 (260)
T 2z1n_A 5 IQGKLAVVTAGSSGLGFASALELARNG---ARLLLFSRNREK---LEAAASRIA--------SL---------------- 54 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHHHH--------HH----------------
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHHHH--------hc----------------
Confidence 568999999999999999999999998 889999997421 111111110 00
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh------CcCEEEEcCcccC-------hhhhHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS------QTTIIFHIAATVR-------FDEHIRT 192 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~------~~d~Vih~a~~~~-------~~~~~~~ 192 (366)
. ...++.++.+|+++.+ .+..+++ ++|+||||||... ....++.
T Consensus 55 ---------------~--~~~~~~~~~~D~~~~~------~v~~~~~~~~~~~gid~lv~~Ag~~~~~~~~~~~~~~~~~ 111 (260)
T 2z1n_A 55 ---------------V--SGAQVDIVAGDIREPG------DIDRLFEKARDLGGADILVYSTGGPRPGRFMELGVEDWDE 111 (260)
T ss_dssp ---------------S--TTCCEEEEECCTTCHH------HHHHHHHHHHHTTCCSEEEECCCCCCCBCGGGCCHHHHHH
T ss_pred ---------------C--CCCeEEEEEccCCCHH------HHHHHHHHHHHhcCCCEEEECCCCCCCCCcccCCHHHHHH
Confidence 0 0126888999999976 6766665 5999999999642 1245678
Q ss_pred HHHHHHHHHHHHHHHHH----hcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 193 AYNINVKGTQTILALAK----RMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 193 ~~~~nv~~~~~ll~~a~----~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
.+++|+.++..+.+.+. +. +.++||++||..++....
T Consensus 112 ~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~~~~-------------------------------------- 152 (260)
T 2z1n_A 112 SYRLLARSAVWVGRRAAEQMVEK-GWGRMVYIGSVTLLRPWQ-------------------------------------- 152 (260)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTSCCT--------------------------------------
T ss_pred HHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEECchhhcCCCC--------------------------------------
Confidence 89999999877666553 33 567999999987653211
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
....|+.+|...+.+.+... +++++++++||.|+++........ ............. .. .........
T Consensus 153 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~---~~~~~~~~~~~~~---~~-~~~~~p~~r 225 (260)
T 2z1n_A 153 DLALSNIMRLPVIGVVRTLALELAPHGVTVNAVLPSLILTDRVRSLAEE---RARRSGITVEEAL---KS-MASRIPMGR 225 (260)
T ss_dssp TBHHHHHHTHHHHHHHHHHHHHHGGGTEEEEEEEECHHHHCCCC------------------------------CCTTSS
T ss_pred CCchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEEECCcccchhhhhhhh---hhcccCCcHHHHH---HH-HHhcCCCCC
Confidence 01679999999998887765 589999999999998854310000 0000000000000 00 001112245
Q ss_pred cccHHHHHHHHHHHHHhhh
Q psy17528 344 VVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~~~ 362 (366)
+.+.+|+|++++.++....
T Consensus 226 ~~~~~dva~~v~~l~s~~~ 244 (260)
T 2z1n_A 226 VGKPEELASVVAFLASEKA 244 (260)
T ss_dssp CCCHHHHHHHHHHHTSGGG
T ss_pred ccCHHHHHHHHHHHhCccc
Confidence 7899999999999887643
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-17 Score=153.33 Aligned_cols=204 Identities=17% Similarity=0.125 Sum_probs=139.3
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++++++||||+|+||.+++++|++.| ++|++++|+... ++.+.+. .
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~-----~~~~~~~--------~---------------- 51 (249)
T 2ew8_A 4 RLKDKLAVITGGANGIGRAIAERFAVEG---ADIAIADLVPAP-----EAEAAIR--------N---------------- 51 (249)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSCCH-----HHHHHHH--------H----------------
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEcCCchh-----HHHHHHH--------h----------------
Confidence 3678999999999999999999999998 899999997521 1111000 0
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH-------hCcCEEEEcCcccC-------hhhhH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI-------SQTTIIFHIAATVR-------FDEHI 190 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~-------~~~d~Vih~a~~~~-------~~~~~ 190 (366)
...++.++.+|+++.+ .+..++ .++|++|||||... ....+
T Consensus 52 -------------------~~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~ 106 (249)
T 2ew8_A 52 -------------------LGRRVLTVKCDVSQPG------DVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQW 106 (249)
T ss_dssp -------------------TTCCEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHH
T ss_pred -------------------cCCcEEEEEeecCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHH
Confidence 1246888999999976 566554 37899999999753 13456
Q ss_pred HHHHHHHHHHHHHHHHHH----HhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 191 RTAYNINVKGTQTILALA----KRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a----~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
+..+++|+.++..+.+++ ++. +..+||++||..++....
T Consensus 107 ~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~~~~------------------------------------ 149 (249)
T 2ew8_A 107 KKTFEINVDSGFLMAKAFVPGMKRN-GWGRIINLTSTTYWLKIE------------------------------------ 149 (249)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGGSCCS------------------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHc-CCeEEEEEcchhhccCCC------------------------------------
Confidence 778999999988777764 333 567999999987653211
Q ss_pred CCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCC-CCCccccccchHHHHHHHHhcCcceeecCCCCc
Q psy17528 267 GGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQE-PMPLWIKGFNGVMALALGAGTGLIRVVQTDPNI 340 (366)
Q Consensus 267 ~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~ 340 (366)
....|+.+|...+.+.+.+. +++++++++||.|.++... ... ... ....... . ..
T Consensus 150 --~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~---~~~-------~~~~~~~----~---~~ 210 (249)
T 2ew8_A 150 --AYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASAL---SAM-------FDVLPNM----L---QA 210 (249)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC----------------------------CT----T---SS
T ss_pred --CchhHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcCcCccchhccc---cch-------hhHHHHh----h---Cc
Confidence 11689999999999887765 5899999999999987532 100 000 0000000 0 11
Q ss_pred ccCcccHHHHHHHHHHHHHhh
Q psy17528 341 SMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 341 ~~~~v~vdDva~ai~~~~~~~ 361 (366)
...+.+.+|+|++++.++...
T Consensus 211 ~~~~~~p~dva~~~~~l~s~~ 231 (249)
T 2ew8_A 211 IPRLQVPLDLTGAAAFLASDD 231 (249)
T ss_dssp SCSCCCTHHHHHHHHHHTSGG
T ss_pred cCCCCCHHHHHHHHHHHcCcc
Confidence 235789999999999988654
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-17 Score=154.57 Aligned_cols=227 Identities=16% Similarity=0.120 Sum_probs=147.5
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHH-hCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLR-CCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~-~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.++++|+||||+|+||.+++++|++ .| ++|++++|+... .+.+.+. +..
T Consensus 2 ~~~k~vlITGasggIG~~~a~~L~~~~g---~~V~~~~r~~~~---~~~~~~~--------l~~---------------- 51 (276)
T 1wma_A 2 SGIHVALVTGGNKGIGLAIVRDLCRLFS---GDVVLTARDVTR---GQAAVQQ--------LQA---------------- 51 (276)
T ss_dssp CCCCEEEESSCSSHHHHHHHHHHHHHSS---SEEEEEESSHHH---HHHHHHH--------HHH----------------
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHhcC---CeEEEEeCChHH---HHHHHHH--------HHh----------------
Confidence 3578999999999999999999999 88 799999997421 1111111 111
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHI 190 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~ 190 (366)
...++.++.+|+++.+ .+..+++ ++|+||||||.... ...+
T Consensus 52 -------------------~~~~~~~~~~Dl~~~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~ 106 (276)
T 1wma_A 52 -------------------EGLSPRFHQLDIDDLQ------SIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQA 106 (276)
T ss_dssp -------------------TTCCCEEEECCTTCHH------HHHHHHHHHHHHHSSEEEEEECCCCCCCTTCCSCHHHHH
T ss_pred -------------------cCCeeEEEECCCCCHH------HHHHHHHHHHHhcCCCCEEEECCcccccCCCccccHHHH
Confidence 1246789999999876 6666665 78999999997531 3556
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecC--c-cc-cccccCCCCCChHHHHHHhhhcchHHHHhhhhcc
Q psy17528 191 RTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCD--R-KF-IAEKFYPPVFTAEELSALVAHASDEEIALLNEHI 265 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~--~-~~-~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (366)
+..+++|+.++..+++++.+. ....+||++||..++.. . .+ ..+.....+++++++.........+......+ .
T Consensus 107 ~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~-~ 185 (276)
T 1wma_A 107 EVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTKKGVHQ-K 185 (276)
T ss_dssp HHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCTT-T
T ss_pred HhhhheeeeeHHHHHHHHHHhhCCCCEEEEECChhhhcccccCChhHHhhccccccchhhhhhhhhhhhhhhcccccc-c
Confidence 788999999999999998764 11248999999866532 1 00 11111122333332221111000000000000 0
Q ss_pred cCCCCchHHHHHHHHHHHHHHhc---------CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecC
Q psy17528 266 IGGKPNSYTLTKATAEDLVRQVG---------HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQT 336 (366)
Q Consensus 266 ~~~~~~~Y~~sK~~~E~~l~~~~---------~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~ 336 (366)
.......|+.+|...|.+++.+. .++++++++||.|.++....
T Consensus 186 ~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~~~~~i~v~~v~PG~v~t~~~~~---------------------------- 237 (276)
T 1wma_A 186 EGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGP---------------------------- 237 (276)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTTCT----------------------------
T ss_pred CCCccchhHHHHHHHHHHHHHHHHHhhcccCCCceEEEEecCCccccCcCCc----------------------------
Confidence 01112789999999998887654 28999999999998753210
Q ss_pred CCCcccCcccHHHHHHHHHHHHHhh
Q psy17528 337 DPNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 337 ~~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
..+.+.+|+|++++.++..+
T Consensus 238 -----~~~~~~~~~a~~~~~l~~~~ 257 (276)
T 1wma_A 238 -----KATKSPEEGAETPVYLALLP 257 (276)
T ss_dssp -----TCSBCHHHHTHHHHHHHSCC
T ss_pred -----cccCChhHhhhhHhhhhcCc
Confidence 13678999999999988755
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-17 Score=155.06 Aligned_cols=207 Identities=14% Similarity=0.141 Sum_probs=145.1
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++|+||||+|+||.+++++|++.| .+|++++|+... ..+.+.+.+. .
T Consensus 27 l~~k~vlITGas~gIG~~la~~l~~~G---~~V~~~~r~~~~--~~~~~~~~~~--------~----------------- 76 (271)
T 4iin_A 27 FTGKNVLITGASKGIGAEIAKTLASMG---LKVWINYRSNAE--VADALKNELE--------E----------------- 76 (271)
T ss_dssp CSCCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSCHH--HHHHHHHHHH--------H-----------------
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCCHH--HHHHHHHHHH--------h-----------------
Confidence 568999999999999999999999999 899999996421 1222222211 1
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
...++.++.+|+++.+ .+.++++ ++|++|||||... ....++
T Consensus 77 ------------------~~~~~~~~~~D~~~~~------~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~ 132 (271)
T 4iin_A 77 ------------------KGYKAAVIKFDAASES------DFIEAIQTIVQSDGGLSYLVNNAGVVRDKLAIKMKTEDFH 132 (271)
T ss_dssp ------------------TTCCEEEEECCTTCHH------HHHHHHHHHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHH
T ss_pred ------------------cCCceEEEECCCCCHH------HHHHHHHHHHHhcCCCCEEEECCCcCCCcccccCCHHHHH
Confidence 1357889999999976 6666654 7899999999753 224567
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
..+++|+.++..+.+.+.+. .+..++|++||..++....
T Consensus 133 ~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------------------------------------- 174 (271)
T 4iin_A 133 HVIDNNLTSAFIGCREALKVMSKSRFGSVVNVASIIGERGNM-------------------------------------- 174 (271)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCT--------------------------------------
T ss_pred HHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEechhhcCCCC--------------------------------------
Confidence 88999999998887766431 2557999999976542211
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
....|+.+|...+.+.+.+. +++.+++++||.|.++....... .. ............
T Consensus 175 ~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~---------~~---------~~~~~~~~~~~~ 236 (271)
T 4iin_A 175 GQTNYSASKGGMIAMSKSFAYEGALRNIRFNSVTPGFIETDMNANLKD---------EL---------KADYVKNIPLNR 236 (271)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCC------------------------------CGGGCTTCS
T ss_pred CchHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcccCCchhhhcH---------HH---------HHHHHhcCCcCC
Confidence 12689999999999887665 68999999999998764322110 00 000111123456
Q ss_pred cccHHHHHHHHHHHHHhhh
Q psy17528 344 VVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~~~ 362 (366)
+.+.+|+|++++.++....
T Consensus 237 ~~~p~dvA~~i~~l~s~~~ 255 (271)
T 4iin_A 237 LGSAKEVAEAVAFLLSDHS 255 (271)
T ss_dssp CBCHHHHHHHHHHHHSGGG
T ss_pred CcCHHHHHHHHHHHhCCCc
Confidence 8899999999999887654
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-17 Score=154.62 Aligned_cols=205 Identities=12% Similarity=0.131 Sum_probs=141.9
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccE-EEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRK-IILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~-V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
+++++|+||||+|+||.+++++|++.| ++ |++++|+... ...+.+.+ .
T Consensus 3 l~~k~vlVtGas~gIG~~~a~~l~~~G---~~~v~~~~r~~~~-~~~~~l~~------------~--------------- 51 (254)
T 1sby_A 3 LTNKNVIFVAALGGIGLDTSRELVKRN---LKNFVILDRVENP-TALAELKA------------I--------------- 51 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTC---CSEEEEEESSCCH-HHHHHHHH------------H---------------
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCC---CcEEEEEecCchH-HHHHHHHH------------h---------------
Confidence 568999999999999999999999998 54 8899997532 11111111 0
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcC-CCCCCHHHHHHHHh-------CcCEEEEcCcccChhhhHHHHHHH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEAD-TFGLSARDEELLIS-------QTTIIFHIAATVRFDEHIRTAYNI 196 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~-~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~~~~~~~~~~~ 196 (366)
.+ ..++.++.+|+++. + .+.++++ ++|+||||||... ...++..+++
T Consensus 52 ----------------~~--~~~~~~~~~D~~~~~~------~~~~~~~~~~~~~g~id~lv~~Ag~~~-~~~~~~~~~~ 106 (254)
T 1sby_A 52 ----------------NP--KVNITFHTYDVTVPVA------ESKKLLKKIFDQLKTVDILINGAGILD-DHQIERTIAI 106 (254)
T ss_dssp ----------------CT--TSEEEEEECCTTSCHH------HHHHHHHHHHHHHSCCCEEEECCCCCC-TTCHHHHHHH
T ss_pred ----------------CC--CceEEEEEEecCCChH------HHHHHHHHHHHhcCCCCEEEECCccCC-HHHHhhhhee
Confidence 11 24688999999987 5 5555543 7899999999753 4567788999
Q ss_pred HHHHHHHHHHHHHhc---CC---CcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCC
Q psy17528 197 NVKGTQTILALAKRM---KG---LKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKP 270 (366)
Q Consensus 197 nv~~~~~ll~~a~~~---~~---~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (366)
|+.++..+++++.+. .+ ..+||++||..++.... ..
T Consensus 107 N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------------------------------------~~ 148 (254)
T 1sby_A 107 NFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAIH--------------------------------------QV 148 (254)
T ss_dssp HTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCT--------------------------------------TS
T ss_pred eehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhccCCC--------------------------------------Cc
Confidence 999999998877642 11 35799999987653211 01
Q ss_pred chHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcc
Q psy17528 271 NSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVV 345 (366)
Q Consensus 271 ~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v 345 (366)
..|+.+|...+.+.+.+. +++++++++||.|.++.......+..... ....... ..++.
T Consensus 149 ~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~----~~~~~~~------------~~~~~ 212 (254)
T 1sby_A 149 PVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEP----RVAELLL------------SHPTQ 212 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCCGGGSCT----THHHHHT------------TSCCE
T ss_pred hHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCccCccccccchhhhhhH----HHHHHHh------------cCCCC
Confidence 679999999999887755 58999999999999864321111110000 0011111 12344
Q ss_pred cHHHHHHHHHHHHHh
Q psy17528 346 PGDRVINAMAALAWY 360 (366)
Q Consensus 346 ~vdDva~ai~~~~~~ 360 (366)
+++|+|++++.++..
T Consensus 213 ~~~dvA~~i~~~~~~ 227 (254)
T 1sby_A 213 TSEQCGQNFVKAIEA 227 (254)
T ss_dssp EHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc
Confidence 899999999988863
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.3e-18 Score=159.28 Aligned_cols=209 Identities=13% Similarity=0.117 Sum_probs=146.9
Q ss_pred cccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccc
Q psy17528 43 QEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGIT 122 (366)
Q Consensus 43 ~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (366)
...+++|++|||||+|+||.+++++|++.| .+|++++|+... .+.+.+.+. .
T Consensus 23 ~~~l~~k~~lVTGas~GIG~aia~~la~~G---~~V~~~~r~~~~---~~~~~~~~~--------~-------------- 74 (270)
T 3ftp_A 23 DKTLDKQVAIVTGASRGIGRAIALELARRG---AMVIGTATTEAG---AEGIGAAFK--------Q-------------- 74 (270)
T ss_dssp CCTTTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSHHH---HHHHHHHHH--------H--------------
T ss_pred ccCCCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHHHH--------h--------------
Confidence 345678999999999999999999999999 899999997431 122222111 1
Q ss_pred cccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhh
Q psy17528 123 HRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDE 188 (366)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~ 188 (366)
...++.++.+|+++.+ .+..+++ ++|++|||||... ...
T Consensus 75 ---------------------~~~~~~~~~~Dv~d~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~ 127 (270)
T 3ftp_A 75 ---------------------AGLEGRGAVLNVNDAT------AVDALVESTLKEFGALNVLVNNAGITQDQLAMRMKDD 127 (270)
T ss_dssp ---------------------HTCCCEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHH
T ss_pred ---------------------cCCcEEEEEEeCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHH
Confidence 1246788999999976 6666654 7899999999743 234
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcc
Q psy17528 189 HIRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHI 265 (366)
Q Consensus 189 ~~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (366)
.++..+++|+.++..+++++.+. .+..+||++||..++....
T Consensus 128 ~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~----------------------------------- 172 (270)
T 3ftp_A 128 EWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIVNITSVVGSAGNP----------------------------------- 172 (270)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCT-----------------------------------
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCCCCC-----------------------------------
Confidence 66788999999999998876431 2446899999986542211
Q ss_pred cCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCc
Q psy17528 266 IGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNI 340 (366)
Q Consensus 266 ~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~ 340 (366)
....|+.+|...+.+.+.+. +++++++++||.|.++.... +. ......... ...
T Consensus 173 ---~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~-------~~--~~~~~~~~~---------~~p 231 (270)
T 3ftp_A 173 ---GQVNYAAAKAGVAGMTRALAREIGSRGITVNCVAPGFIDTDMTKG-------LP--QEQQTALKT---------QIP 231 (270)
T ss_dssp ---TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHH-------SC--HHHHHHHHT---------TCT
T ss_pred ---CchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCcchhh-------cC--HHHHHHHHh---------cCC
Confidence 11689999998888876655 68999999999998753211 11 111111111 122
Q ss_pred ccCcccHHHHHHHHHHHHHhhh
Q psy17528 341 SMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 341 ~~~~v~vdDva~ai~~~~~~~~ 362 (366)
...+.+.+|+|++++.++....
T Consensus 232 ~~r~~~pedvA~~v~~L~s~~~ 253 (270)
T 3ftp_A 232 LGRLGSPEDIAHAVAFLASPQA 253 (270)
T ss_dssp TCSCBCHHHHHHHHHHHHSGGG
T ss_pred CCCCCCHHHHHHHHHHHhCCCc
Confidence 3568899999999999886443
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=7.5e-17 Score=151.69 Aligned_cols=204 Identities=13% Similarity=0.139 Sum_probs=145.8
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|+++||||+|+||.+++++|++.| .+|++++|.... ..+.+.+.+. .
T Consensus 26 l~~k~vlVTGas~gIG~aia~~la~~G---~~V~~~~~~~~~--~~~~~~~~~~--------~----------------- 75 (269)
T 4dmm_A 26 LTDRIALVTGASRGIGRAIALELAAAG---AKVAVNYASSAG--AADEVVAAIA--------A----------------- 75 (269)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSCHH--HHHHHHHHHH--------H-----------------
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCChH--HHHHHHHHHH--------h-----------------
Confidence 568999999999999999999999999 889998885321 1122222111 1
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
...++.++.+|+++.+ .+..+++ ++|++|||||... ....++
T Consensus 76 ------------------~~~~~~~~~~D~~d~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~ 131 (269)
T 4dmm_A 76 ------------------AGGEAFAVKADVSQES------EVEALFAAVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQ 131 (269)
T ss_dssp ------------------TTCCEEEEECCTTSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHH
T ss_pred ------------------cCCcEEEEECCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHH
Confidence 1357889999999986 6666654 7899999999753 234567
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
..+++|+.++..+++++.+. .+..+||++||..++... +
T Consensus 132 ~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~--------------------------------------~ 173 (269)
T 4dmm_A 132 SVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASVVGEMGN--------------------------------------P 173 (269)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCHHHHHCC--------------------------------------T
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCCC--------------------------------------C
Confidence 88999999999988876431 245699999998654221 1
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
....|+.+|...+.+.+... +|+++++++||.|.++.... . ........ .....
T Consensus 174 ~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~-------~-----~~~~~~~~---------~p~~r 232 (269)
T 4dmm_A 174 GQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDMTSE-------L-----AAEKLLEV---------IPLGR 232 (269)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBTTSCSCH-------H-----HHHHHGGG---------CTTSS
T ss_pred CchhHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEECCCcCccccc-------c-----cHHHHHhc---------CCCCC
Confidence 12689999998888776655 68999999999999875421 0 00111111 12345
Q ss_pred cccHHHHHHHHHHHHHhhh
Q psy17528 344 VVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~~~ 362 (366)
+...+|+|++++.++..+.
T Consensus 233 ~~~~~dvA~~v~~l~s~~~ 251 (269)
T 4dmm_A 233 YGEAAEVAGVVRFLAADPA 251 (269)
T ss_dssp CBCHHHHHHHHHHHHHCGG
T ss_pred CCCHHHHHHHHHHHhCCcc
Confidence 7889999999999998743
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.4e-17 Score=154.03 Aligned_cols=207 Identities=12% Similarity=0.067 Sum_probs=144.8
Q ss_pred CCCCeEEEeCCc--chHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 46 YKDQTIFITGAT--GFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 46 ~~~~~ilItGat--G~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
+++++|+||||+ |+||.+++++|++.| ++|++++|+.. ..+.+.++. ..
T Consensus 7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G---~~V~~~~r~~~---~~~~~~~l~---------~~-------------- 57 (265)
T 1qsg_A 7 LSGKRILVTGVASKLSIAYGIAQAMHREG---AELAFTYQNDK---LKGRVEEFA---------AQ-------------- 57 (265)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTT---CEEEEEESSTT---THHHHHHHH---------HH--------------
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCC---CEEEEEcCcHH---HHHHHHHHH---------Hh--------------
Confidence 568999999999 999999999999998 88999999762 122222111 10
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh----------
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF---------- 186 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~---------- 186 (366)
. ....++.+|+++.+ .+..+++ ++|+||||||....
T Consensus 58 -----------------~----~~~~~~~~D~~~~~------~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~ 110 (265)
T 1qsg_A 58 -----------------L----GSDIVLQCDVAEDA------SIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNA 110 (265)
T ss_dssp -----------------T----TCCCEEECCTTCHH------HHHHHHHHHHTTCSSEEEEEECCCCCCGGGGSSCHHHH
T ss_pred -----------------c----CCcEEEEccCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCccccCCCcccc
Confidence 1 12367899999976 6666664 67999999996431
Q ss_pred --hhhHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhh
Q psy17528 187 --DEHIRTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNE 263 (366)
Q Consensus 187 --~~~~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 263 (366)
...++..+++|+.++..+++++.+. ....+||++||..++....
T Consensus 111 ~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~--------------------------------- 157 (265)
T 1qsg_A 111 VTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIP--------------------------------- 157 (265)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCT---------------------------------
T ss_pred CCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhccCCC---------------------------------
Confidence 2345778999999999999988763 1125899999976542110
Q ss_pred cccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCC
Q psy17528 264 HIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDP 338 (366)
Q Consensus 264 ~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~ 338 (366)
....|+.+|...+.+.+.+. +++++++++||.|+++...... ....+......+.
T Consensus 158 -----~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~-------~~~~~~~~~~~~~-------- 217 (265)
T 1qsg_A 158 -----NYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIK-------DFRKMLAHCEAVT-------- 217 (265)
T ss_dssp -----TTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGST-------THHHHHHHHHHHS--------
T ss_pred -----CchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCccchhhccc-------ccHHHHHHHHhcC--------
Confidence 01679999999999987765 5899999999999987542111 1111221111111
Q ss_pred CcccCcccHHHHHHHHHHHHHhhh
Q psy17528 339 NISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 339 ~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
....+.+.+|+|++++.++....
T Consensus 218 -p~~~~~~~~dva~~v~~l~s~~~ 240 (265)
T 1qsg_A 218 -PIRRTVTIEDVGNSAAFLCSDLS 240 (265)
T ss_dssp -TTSSCCCHHHHHHHHHHHTSGGG
T ss_pred -CCCCCCCHHHHHHHHHHHhCchh
Confidence 11347799999999999886543
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-16 Score=148.89 Aligned_cols=174 Identities=14% Similarity=0.135 Sum_probs=127.1
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
..+++++|+||||+|+||++++++|++.|...++|++++|+...... +.++..
T Consensus 17 ~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~---~~~l~~------------------------ 69 (267)
T 1sny_A 17 RGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKE---LEDLAK------------------------ 69 (267)
T ss_dssp ---CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHH---HHHHHH------------------------
T ss_pred cCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHH---HHHhhc------------------------
Confidence 44668999999999999999999999997333689999998654321 211100
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh---------CcCEEEEcCcccC--------h
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS---------QTTIIFHIAATVR--------F 186 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~---------~~d~Vih~a~~~~--------~ 186 (366)
...++.++.+|+++.+ .+..+++ ++|+||||||... .
T Consensus 70 --------------------~~~~~~~~~~Dl~~~~------~v~~~~~~~~~~~g~~~id~li~~Ag~~~~~~~~~~~~ 123 (267)
T 1sny_A 70 --------------------NHSNIHILEIDLRNFD------AYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVR 123 (267)
T ss_dssp --------------------HCTTEEEEECCTTCGG------GHHHHHHHHHHHHGGGCCSEEEECCCCCCCCCCGGGCC
T ss_pred --------------------cCCceEEEEecCCChH------HHHHHHHHHHHhcCCCCccEEEECCCcCCCccccccCC
Confidence 0247889999999987 6666664 6999999999754 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhc---C------C-----CcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhh
Q psy17528 187 DEHIRTAYNINVKGTQTILALAKRM---K------G-----LKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAH 252 (366)
Q Consensus 187 ~~~~~~~~~~nv~~~~~ll~~a~~~---~------~-----~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~ 252 (366)
...++..+++|+.++..+++++.+. . + ..+||++||..++....+ ..+
T Consensus 124 ~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~------~~~------------ 185 (267)
T 1sny_A 124 SQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQGNT------DGG------------ 185 (267)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGGCSTTCC------SCC------------
T ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEEecccccccCCC------CCC------------
Confidence 3456778999999999998877542 0 1 468999999876532210 001
Q ss_pred cchHHHHhhhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCC
Q psy17528 253 ASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTL 305 (366)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~ 305 (366)
...|+.+|...|.+++.+. ++++++++|||.|.++.
T Consensus 186 -----------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~ 226 (267)
T 1sny_A 186 -----------------MYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDM 226 (267)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTT
T ss_pred -----------------chHHHHHHHHHHHHHHHHHHHhhcCCcEEEEeCCcceecCC
Confidence 1679999999999987765 58999999999997653
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.2e-17 Score=150.08 Aligned_cols=197 Identities=13% Similarity=0.137 Sum_probs=136.1
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
|++++|+||||+|+||.+++++|++.| ..++|++++|+.... +.+.+
T Consensus 1 m~~k~vlItGasggiG~~la~~l~~~g-~~~~V~~~~r~~~~~---~~l~~----------------------------- 47 (250)
T 1yo6_A 1 MSPGSVVVTGANRGIGLGLVQQLVKDK-NIRHIIATARDVEKA---TELKS----------------------------- 47 (250)
T ss_dssp CCCSEEEESSCSSHHHHHHHHHHHTCT-TCCEEEEEESSGGGC---HHHHT-----------------------------
T ss_pred CCCCEEEEecCCchHHHHHHHHHHhcC-CCcEEEEEecCHHHH---HHHHh-----------------------------
Confidence 467899999999999999999999986 225889999975422 11110
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh---------CcCEEEEcCcccC--------hhh
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS---------QTTIIFHIAATVR--------FDE 188 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~---------~~d~Vih~a~~~~--------~~~ 188 (366)
. ...++.++.+|+++.+ .+..+++ ++|+||||||... ...
T Consensus 48 ---------------~--~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~ 104 (250)
T 1yo6_A 48 ---------------I--KDSRVHVLPLTVTCDK------SLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRA 104 (250)
T ss_dssp ---------------C--CCTTEEEEECCTTCHH------HHHHHHHHHHHHHGGGCCCEEEECCCCCCCBCTTSCCCHH
T ss_pred ---------------c--cCCceEEEEeecCCHH------HHHHHHHHHHHhcCCCCCcEEEECCcccCCCcccccCCHH
Confidence 1 1357899999999876 6666665 7999999999754 134
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc---C------C-----CcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcc
Q psy17528 189 HIRTAYNINVKGTQTILALAKRM---K------G-----LKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHAS 254 (366)
Q Consensus 189 ~~~~~~~~nv~~~~~ll~~a~~~---~------~-----~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~ 254 (366)
.++..+++|+.++..+++++.+. . + ..+||++||..++....+ +..++.+
T Consensus 105 ~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~--~~~~~~~-------------- 168 (250)
T 1yo6_A 105 VIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNT--SGSAQFP-------------- 168 (250)
T ss_dssp HHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCSTTCC--STTSSSC--------------
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccCccccCCcc--cccccCC--------------
Confidence 56778999999999888876432 1 2 579999999876533211 0011111
Q ss_pred hHHHHhhhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcC
Q psy17528 255 DEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTG 329 (366)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g 329 (366)
...|+.+|...+.+++.+. +++.+++++||.|.++....
T Consensus 169 ---------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~--------------------- 212 (250)
T 1yo6_A 169 ---------------VLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGK--------------------- 212 (250)
T ss_dssp ---------------BHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC----------------------------
T ss_pred ---------------ccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcCCceecCCCCC---------------------
Confidence 1689999999999987765 48999999999987753210
Q ss_pred cceeecCCCCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 330 LIRVVQTDPNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 330 ~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
..+++.+|+|++++.++....
T Consensus 213 ------------~~~~~~~~~a~~~~~~~~~~~ 233 (250)
T 1yo6_A 213 ------------NAALTVEQSTAELISSFNKLD 233 (250)
T ss_dssp ------------------HHHHHHHHHHHTTCC
T ss_pred ------------CCCCCHHHHHHHHHHHHhccc
Confidence 135788999999999887653
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-17 Score=156.35 Aligned_cols=209 Identities=14% Similarity=0.126 Sum_probs=146.0
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|++|||||+|+||.+++++|++.| .+|++++|+... .+++.+.
T Consensus 25 l~~k~vlVTGas~GIG~aia~~l~~~G---~~V~~~~r~~~~---~~~~~~~---------------------------- 70 (277)
T 4dqx_A 25 LNQRVCIVTGGGSGIGRATAELFAKNG---AYVVVADVNEDA---AVRVANE---------------------------- 70 (277)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSHHH---HHHHHHH----------------------------
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHH----------------------------
Confidence 568999999999999999999999999 899999997421 1111110
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
...++.++.+|+++.+ .+..+++ ++|++|||||... ....++
T Consensus 71 ------------------~~~~~~~~~~Dv~d~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~ 126 (277)
T 4dqx_A 71 ------------------IGSKAFGVRVDVSSAK------DAESMVEKTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWD 126 (277)
T ss_dssp ------------------HCTTEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHH
T ss_pred ------------------hCCceEEEEecCCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHH
Confidence 1246888999999976 6666654 7899999999642 234667
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
..+++|+.++..+.+++.+. .+..+||++||..++....
T Consensus 127 ~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------------------------------------- 168 (277)
T 4dqx_A 127 RIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTATSAIA-------------------------------------- 168 (277)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECCGGGTSCCT--------------------------------------
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECchhhCcCCC--------------------------------------
Confidence 88999999999888876432 2456999999987652211
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
....|+.+|...+.+.+.+. +++++++++||.|.++.... ................ .......
T Consensus 169 ~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~---~~~~~~~~~~~~~~~~---------~~~~~~r 236 (277)
T 4dqx_A 169 DRTAYVASKGAISSLTRAMAMDHAKEGIRVNAVAPGTIDSPYFTK---IFAEAKDPAKLRSDFN---------ARAVMDR 236 (277)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHH---HHHTCSCHHHHHHHHH---------TTSTTCS
T ss_pred CChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCchhhh---hcccccchhHHHHHHH---------hcCcccC
Confidence 11689999999999887765 68999999999998753100 0000000011111111 1223456
Q ss_pred cccHHHHHHHHHHHHHhhh
Q psy17528 344 VVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~~~ 362 (366)
+...+|+|++++.++....
T Consensus 237 ~~~pedvA~~v~~L~s~~~ 255 (277)
T 4dqx_A 237 MGTAEEIAEAMLFLASDRS 255 (277)
T ss_dssp CBCHHHHHHHHHHHHSGGG
T ss_pred CcCHHHHHHHHHHHhCCcc
Confidence 7899999999999887654
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-17 Score=157.08 Aligned_cols=218 Identities=15% Similarity=0.067 Sum_probs=147.3
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++++|+||||+|+||.+++++|++.| .+|++++|+... ..+.
T Consensus 13 ~l~gk~vlVTGas~gIG~~~a~~L~~~G---~~V~~~~r~~~~------~~~~--------------------------- 56 (291)
T 3rd5_A 13 SFAQRTVVITGANSGLGAVTARELARRG---ATVIMAVRDTRK------GEAA--------------------------- 56 (291)
T ss_dssp CCTTCEEEEECCSSHHHHHHHHHHHHTT---CEEEEEESCHHH------HHHH---------------------------
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEECCHHH------HHHH---------------------------
Confidence 3578999999999999999999999998 899999997431 1111
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh---CcCEEEEcCcccCh-----hhhHHHHHHH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS---QTTIIFHIAATVRF-----DEHIRTAYNI 196 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~---~~d~Vih~a~~~~~-----~~~~~~~~~~ 196 (366)
......++.++.+|+++.+ .+..+++ ++|++|||||.... ...++..+++
T Consensus 57 ----------------~~~~~~~~~~~~~Dl~d~~------~v~~~~~~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~v 114 (291)
T 3rd5_A 57 ----------------ARTMAGQVEVRELDLQDLS------SVRRFADGVSGADVLINNAGIMAVPYALTVDGFESQIGT 114 (291)
T ss_dssp ----------------HTTSSSEEEEEECCTTCHH------HHHHHHHTCCCEEEEEECCCCCSCCCCBCTTSCBHHHHH
T ss_pred ----------------HHHhcCCeeEEEcCCCCHH------HHHHHHHhcCCCCEEEECCcCCCCcccCCHHHHHHHHHH
Confidence 0111357899999999987 7888877 57999999997532 2455678999
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEeeCcceecCccccccc-cCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHH
Q psy17528 197 NVKGTQTILALAKRMKGLKSFVHVSTAYCNCDRKFIAEK-FYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTL 275 (366)
Q Consensus 197 nv~~~~~ll~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~ 275 (366)
|+.++..+++++.+. ..+++|++||...+......... ....+..+ ...|+.
T Consensus 115 N~~g~~~l~~~~~~~-~~~riv~isS~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~Y~~ 167 (291)
T 3rd5_A 115 NHLGHFALTNLLLPR-LTDRVVTVSSMAHWPGRINLEDLNWRSRRYSP--------------------------WLAYSQ 167 (291)
T ss_dssp HTHHHHHHHHHHGGG-EEEEEEEECCGGGTTCCCCSSCTTCSSSCCCH--------------------------HHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHhheeEeechhhccCCCCcccccccccCCCC--------------------------cchHHH
Confidence 999999999998875 45699999998766432111100 00011111 167999
Q ss_pred HHHHHHHHHHHhc-----CC--CCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHH
Q psy17528 276 TKATAEDLVRQVG-----HE--LPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGD 348 (366)
Q Consensus 276 sK~~~E~~l~~~~-----~g--l~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vd 348 (366)
+|...+.+.+.+. .+ +.+++++||.|.++........ ........ ...+-....+
T Consensus 168 sK~a~~~~~~~la~e~~~~g~~i~v~~v~PG~v~T~~~~~~~~~----------~~~~~~~~--------~~~~~~~~~~ 229 (291)
T 3rd5_A 168 SKLANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQGASGRK----------LGDALMSA--------ATRVVATDAD 229 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEEECCSGGGSCC--------------------------------------CHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCEEEEEeeCCCCccccccccchH----------HHHHHHHH--------HHHHHhCCHH
Confidence 9999999887765 45 9999999999987654321100 00000000 0112234589
Q ss_pred HHHHHHHHHHHhhhhcC
Q psy17528 349 RVINAMAALAWYFLFSC 365 (366)
Q Consensus 349 Dva~ai~~~~~~~~~~~ 365 (366)
|+|++++.++..+..+|
T Consensus 230 ~~A~~~~~l~~~~~~~G 246 (291)
T 3rd5_A 230 FGARQTLYAASQDLPGD 246 (291)
T ss_dssp HHHHHHHHHHHSCCCTT
T ss_pred HHHHHHHHHHcCCCCCC
Confidence 99999999988754343
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.6e-17 Score=153.29 Aligned_cols=206 Identities=9% Similarity=0.031 Sum_probs=136.9
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||.+++++|++.| .+|++++|+.... +.+.+.+. .
T Consensus 5 ~~~k~vlVTGas~GIG~aia~~l~~~G---~~V~~~~r~~~~~---~~~~~~~~--------~----------------- 53 (252)
T 3h7a_A 5 PRNATVAVIGAGDYIGAEIAKKFAAEG---FTVFAGRRNGEKL---APLVAEIE--------A----------------- 53 (252)
T ss_dssp CCSCEEEEECCSSHHHHHHHHHHHHTT---CEEEEEESSGGGG---HHHHHHHH--------H-----------------
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCHHHH---HHHHHHHH--------h-----------------
Confidence 568999999999999999999999999 8999999975432 11211111 1
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh------CcCEEEEcCcccC-------hhhhHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS------QTTIIFHIAATVR-------FDEHIRT 192 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~------~~d~Vih~a~~~~-------~~~~~~~ 192 (366)
...++.++.+|+++.+ .+..+++ ++|++|||||... ....++.
T Consensus 54 ------------------~~~~~~~~~~Dv~~~~------~v~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~ 109 (252)
T 3h7a_A 54 ------------------AGGRIVARSLDARNED------EVTAFLNAADAHAPLEVTIFNVGANVNFPILETTDRVFRK 109 (252)
T ss_dssp ------------------TTCEEEEEECCTTCHH------HHHHHHHHHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHH
T ss_pred ------------------cCCeEEEEECcCCCHH------HHHHHHHHHHhhCCceEEEECCCcCCCCCcccCCHHHHHH
Confidence 1357889999999987 6766665 6799999999743 2345678
Q ss_pred HHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCC
Q psy17528 193 AYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGK 269 (366)
Q Consensus 193 ~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (366)
.+++|+.++..+.+.+.+. .+..++|++||..++.... .
T Consensus 110 ~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------------------------------------~ 151 (252)
T 3h7a_A 110 VWEMACWAGFVSGRESARLMLAHGQGKIFFTGATASLRGGS--------------------------------------G 151 (252)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTCCCT--------------------------------------T
T ss_pred HHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHHcCCCC--------------------------------------C
Confidence 8999999998888766321 1456999999986542211 1
Q ss_pred CchHHHHHHHHHHHHHHhc-----CCCCE-EEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 270 PNSYTLTKATAEDLVRQVG-----HELPI-CVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 270 ~~~Y~~sK~~~E~~l~~~~-----~gl~~-~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
...|+.+|...+.+.+... +++.+ +++.||.|.++...... ..... .........
T Consensus 152 ~~~Y~asKaa~~~l~~~la~e~~~~gi~v~n~v~PG~v~T~~~~~~~-------------~~~~~-----~~~~~~~~~- 212 (252)
T 3h7a_A 152 FAAFASAKFGLRAVAQSMARELMPKNIHVAHLIIDSGVDTAWVRERR-------------EQMFG-----KDALANPDL- 212 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC---------------------------------------------
T ss_pred CccHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCCccCChhhhccc-------------hhhhh-----hhhhcCCcc-
Confidence 2689999999998887765 68999 89999999876432110 00000 011111233
Q ss_pred cccHHHHHHHHHHHHHhhhh
Q psy17528 344 VVPGDRVINAMAALAWYFLF 363 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~~~~ 363 (366)
++..+|+|++++.++..+..
T Consensus 213 ~~~pedvA~~~~~l~s~~~~ 232 (252)
T 3h7a_A 213 LMPPAAVAGAYWQLYQQPKS 232 (252)
T ss_dssp -CCHHHHHHHHHHHHHCCGG
T ss_pred CCCHHHHHHHHHHHHhCchh
Confidence 89999999999999986543
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=99.76 E-value=3e-17 Score=153.79 Aligned_cols=202 Identities=15% Similarity=0.154 Sum_probs=139.3
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++||||||+|+||.+++++|++.| .+|++++|+.... .+.+.+
T Consensus 25 l~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~~--~~~~~~----------------------------- 70 (260)
T 3gem_A 25 LSSAPILITGASQRVGLHCALRLLEHG---HRVIISYRTEHAS--VTELRQ----------------------------- 70 (260)
T ss_dssp --CCCEEESSTTSHHHHHHHHHHHHTT---CCEEEEESSCCHH--HHHHHH-----------------------------
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCChHHH--HHHHHh-----------------------------
Confidence 468999999999999999999999999 7899999986421 111111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC------hhhhHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR------FDEHIRT 192 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~------~~~~~~~ 192 (366)
..+.++.+|+++.+ .+..+++ .+|++|||||... ....++.
T Consensus 71 --------------------~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~ 124 (260)
T 3gem_A 71 --------------------AGAVALYGDFSCET------GIMAFIDLLKTQTSSLRAVVHNASEWLAETPGEEADNFTR 124 (260)
T ss_dssp --------------------HTCEEEECCTTSHH------HHHHHHHHHHHHCSCCSEEEECCCCCCCCCTTCHHHHHHH
T ss_pred --------------------cCCeEEECCCCCHH------HHHHHHHHHHHhcCCCCEEEECCCccCCCCCCCCHHHHHH
Confidence 13678899999976 6666654 6899999999643 1245567
Q ss_pred HHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCC
Q psy17528 193 AYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGK 269 (366)
Q Consensus 193 ~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (366)
.+++|+.++..+.+.+.+. .+..++|++||..++.... .
T Consensus 125 ~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~--------------------------------------~ 166 (260)
T 3gem_A 125 MFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTRKGSS--------------------------------------K 166 (260)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGTCCS--------------------------------------S
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCCCC--------------------------------------C
Confidence 8999999999988876532 2457999999986652211 1
Q ss_pred CchHHHHHHHHHHHHHHhc----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcc
Q psy17528 270 PNSYTLTKATAEDLVRQVG----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVV 345 (366)
Q Consensus 270 ~~~Y~~sK~~~E~~l~~~~----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v 345 (366)
...|+.+|...+.+.+.+. .++.+++++||.|.++.... .. ........ ....-+.
T Consensus 167 ~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~t~~~~~-~~----------~~~~~~~~---------~p~~r~~ 226 (260)
T 3gem_A 167 HIAYCATKAGLESLTLSFAARFAPLVKVNGIAPALLMFQPKDD-AA----------YRANALAK---------SALGIEP 226 (260)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECTTCC-----------------------------------CCSCCCC
T ss_pred cHhHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccCCCCC-HH----------HHHHHHhc---------CCCCCCC
Confidence 1689999999999887766 56999999999998764321 00 11111111 1123456
Q ss_pred cHHHHHHHHHHHHHhhhhcC
Q psy17528 346 PGDRVINAMAALAWYFLFSC 365 (366)
Q Consensus 346 ~vdDva~ai~~~~~~~~~~~ 365 (366)
..+|+|++++.++.....+|
T Consensus 227 ~~edva~~v~~L~~~~~itG 246 (260)
T 3gem_A 227 GAEVIYQSLRYLLDSTYVTG 246 (260)
T ss_dssp CTHHHHHHHHHHHHCSSCCS
T ss_pred CHHHHHHHHHHHhhCCCCCC
Confidence 78999999999885443333
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.1e-17 Score=155.39 Aligned_cols=210 Identities=14% Similarity=0.072 Sum_probs=147.9
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|++|||||+|+||.+++++|++.| .+|++++|+... .+.+.+.
T Consensus 6 l~gk~vlVTGas~GIG~aia~~la~~G---~~V~~~~r~~~~---~~~~~~~---------------------------- 51 (280)
T 3tox_A 6 LEGKIAIVTGASSGIGRAAALLFAREG---AKVVVTARNGNA---LAELTDE---------------------------- 51 (280)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTT---CEEEECCSCHHH---HHHHHHH----------------------------
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEECCHHH---HHHHHHH----------------------------
Confidence 568999999999999999999999999 889999997421 1111111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC--------hhhhH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR--------FDEHI 190 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~--------~~~~~ 190 (366)
......++.++.+|+++.+ .+..+++ ++|++|||||... ....+
T Consensus 52 ---------------~~~~~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~ 110 (280)
T 3tox_A 52 ---------------IAGGGGEAAALAGDVGDEA------LHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGW 110 (280)
T ss_dssp ---------------HTTTTCCEEECCCCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCSCSCGGGCCHHHH
T ss_pred ---------------HHhcCCcEEEEECCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHH
Confidence 1112357889999999976 6666554 6899999999642 12456
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 191 RTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
+..+++|+.++..+.+++.+. .+..++|++||..++... .
T Consensus 111 ~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~---------~---------------------------- 153 (280)
T 3tox_A 111 RETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTAG---------F---------------------------- 153 (280)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCSBTTTBC---------C----------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhCcCC---------C----------------------------
Confidence 789999999999988876432 245699999998654110 0
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCC-CCccccccchHHHHHHHHhcCcceeecCCCCcc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEP-MPLWIKGFNGVMALALGAGTGLIRVVQTDPNIS 341 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~ 341 (366)
+....|+.+|...+.+.+.+. +++++++++||.|.++.... .+.. .. ........ ....
T Consensus 154 ~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~---~~---~~~~~~~~---------~~p~ 218 (280)
T 3tox_A 154 AGVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANLPGA---AP---ETRGFVEG---------LHAL 218 (280)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBSSTTSGGGSTTC---CT---HHHHHHHT---------TSTT
T ss_pred CCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCCCCchhhhhcccc---CH---HHHHHHhc---------cCcc
Confidence 011679999999999887765 68999999999999875421 1000 01 11111111 1223
Q ss_pred cCcccHHHHHHHHHHHHHhhh
Q psy17528 342 MDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 342 ~~~v~vdDva~ai~~~~~~~~ 362 (366)
..+...+|+|++++.++....
T Consensus 219 ~r~~~pedvA~~v~~L~s~~a 239 (280)
T 3tox_A 219 KRIARPEEIAEAALYLASDGA 239 (280)
T ss_dssp SSCBCHHHHHHHHHHHHSGGG
T ss_pred CCCcCHHHHHHHHHHHhCccc
Confidence 458899999999999887654
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.76 E-value=7.1e-18 Score=159.18 Aligned_cols=208 Identities=13% Similarity=0.123 Sum_probs=146.2
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.++++++|||||+|+||.+++++|++.| .+|++++|.+. .+...+.+.
T Consensus 28 ~l~gk~~lVTGas~GIG~aia~~la~~G---~~V~~~~r~~~----~~~~~~~~~------------------------- 75 (273)
T 3uf0_A 28 SLAGRTAVVTGAGSGIGRAIAHGYARAG---AHVLAWGRTDG----VKEVADEIA------------------------- 75 (273)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSTH----HHHHHHHHH-------------------------
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEcCHHH----HHHHHHHHH-------------------------
Confidence 3678999999999999999999999999 78999987532 122211111
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh------CcCEEEEcCcccC-------hhhhHH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
....++.++.+|+++.+ .+..+.+ ++|++|||||... ....++
T Consensus 76 ------------------~~~~~~~~~~~Dv~d~~------~v~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~ 131 (273)
T 3uf0_A 76 ------------------DGGGSAEAVVADLADLE------GAANVAEELAATRRVDVLVNNAGIIARAPAEEVSLGRWR 131 (273)
T ss_dssp ------------------TTTCEEEEEECCTTCHH------HHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHH
T ss_pred ------------------hcCCcEEEEEecCCCHH------HHHHHHHHHHhcCCCcEEEECCCCCCCCCchhCCHHHHH
Confidence 12357889999999976 5554433 7899999999753 234567
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
..+++|+.++..+++++.+. .+..+||++||..++....
T Consensus 132 ~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~~-------------------------------------- 173 (273)
T 3uf0_A 132 EVLTVNLDAAWVLSRSFGTAMLAHGSGRIVTIASMLSFQGGR-------------------------------------- 173 (273)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCS--------------------------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchHhcCCCC--------------------------------------
Confidence 89999999999988876321 2557999999987652211
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
....|+.+|...+.+.+.+. +|+++++++||.|.++.... .............. .....
T Consensus 174 ~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~-------~~~~~~~~~~~~~~---------~p~~r 237 (273)
T 3uf0_A 174 NVAAYAASKHAVVGLTRALASEWAGRGVGVNALAPGYVVTANTAA-------LRADDERAAEITAR---------IPAGR 237 (273)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHH-------HHTSHHHHHHHHHH---------STTSS
T ss_pred CChhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCchhh-------cccCHHHHHHHHhc---------CCCCC
Confidence 11689999999999887765 68999999999999864321 00001111111111 12345
Q ss_pred cccHHHHHHHHHHHHHhhh
Q psy17528 344 VVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~~~ 362 (366)
+...+|+|++++.++...+
T Consensus 238 ~~~pedva~~v~~L~s~~a 256 (273)
T 3uf0_A 238 WATPEDMVGPAVFLASDAA 256 (273)
T ss_dssp CBCGGGGHHHHHHHHSGGG
T ss_pred CCCHHHHHHHHHHHhCchh
Confidence 7889999999999887643
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-17 Score=152.72 Aligned_cols=208 Identities=14% Similarity=0.113 Sum_probs=142.0
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++++++||||+|+||.+++++|++.| ++|++++|+.. ++.+... .
T Consensus 3 ~l~~k~vlVTGas~giG~~ia~~l~~~G---~~V~~~~r~~~------~~~~~~~---------~--------------- 49 (253)
T 1hxh_A 3 RLQGKVALVTGGASGVGLEVVKLLLGEG---AKVAFSDINEA------AGQQLAA---------E--------------- 49 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEECSCHH------HHHHHHH---------H---------------
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHHHH---------H---------------
Confidence 3678999999999999999999999998 88999998642 1111100 0
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHI 190 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~ 190 (366)
. ..++.++.+|+++.+ .+..+++ .+|+||||||.... ...+
T Consensus 50 ----------------~---~~~~~~~~~D~~~~~------~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~ 104 (253)
T 1hxh_A 50 ----------------L---GERSMFVRHDVSSEA------DWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDF 104 (253)
T ss_dssp ----------------H---CTTEEEECCCTTCHH------HHHHHHHHHHHHHCSCCEEEECCCCCCCBCTTTCCHHHH
T ss_pred ----------------c---CCceEEEEccCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHH
Confidence 0 246788999999976 6665554 47999999997532 3456
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 191 RTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
+..+++|+.++..+.+.+.+. .+ .+||++||..++....
T Consensus 105 ~~~~~~N~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~~------------------------------------- 146 (253)
T 1hxh_A 105 SRLLKINTESVFIGCQQGIAAMKETG-GSIINMASVSSWLPIE------------------------------------- 146 (253)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHTTTC-EEEEEECCGGGTSCCT-------------------------------------
T ss_pred HHHHHhhcHHHHHHHHHHHHHHHHcC-CEEEEEcchhhcCCCC-------------------------------------
Confidence 788999998877776654321 24 7999999987653211
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----C--CCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----H--ELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNI 340 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~--gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~ 340 (366)
....|+.+|...+.+.+... + +++++++|||.|+++..... ..... ......... ....
T Consensus 147 -~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~~~~--~~~~~------~~~~~~~~~-----~~~p 212 (253)
T 1hxh_A 147 -QYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQAS--LPKGV------SKEMVLHDP-----KLNR 212 (253)
T ss_dssp -TBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHH--SCTTC------CHHHHBCBT-----TTBT
T ss_pred -CCccHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEEEeCCccCchhhhc--cchhh------hHHHHhhhh-----ccCc
Confidence 01679999999999988765 3 89999999999998642100 00000 000000000 0111
Q ss_pred ccCcccHHHHHHHHHHHHHhhh
Q psy17528 341 SMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 341 ~~~~v~vdDva~ai~~~~~~~~ 362 (366)
...+...+|+|++++.++..+.
T Consensus 213 ~~~~~~~~dvA~~~~~l~s~~~ 234 (253)
T 1hxh_A 213 AGRAYMPERIAQLVLFLASDES 234 (253)
T ss_dssp TCCEECHHHHHHHHHHHHSGGG
T ss_pred cCCCCCHHHHHHHHHHHcCccc
Confidence 2357899999999999887653
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-17 Score=153.86 Aligned_cols=204 Identities=13% Similarity=0.159 Sum_probs=142.3
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|++|||||+|+||.+++++|++.| .+|++++|+... ..+.
T Consensus 7 l~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~------~~~~---------------------------- 49 (257)
T 3tl3_A 7 IRDAVAVVTGGASGLGLATTKRLLDAG---AQVVVLDIRGED------VVAD---------------------------- 49 (257)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHHT---CEEEEEESSCHH------HHHH----------------------------
T ss_pred ecCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCchHH------HHHh----------------------------
Confidence 568999999999999999999999999 899999995321 1000
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh------CcCEEEEcCcccC-----------hhh
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS------QTTIIFHIAATVR-----------FDE 188 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~------~~d~Vih~a~~~~-----------~~~ 188 (366)
...++.++.+|+++.+ .+..+++ .+|++|||||... ...
T Consensus 50 ------------------~~~~~~~~~~D~~~~~------~v~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~ 105 (257)
T 3tl3_A 50 ------------------LGDRARFAAADVTDEA------AVASALDLAETMGTLRIVVNCAGTGNAIRVLSRDGVFSLA 105 (257)
T ss_dssp ------------------TCTTEEEEECCTTCHH------HHHHHHHHHHHHSCEEEEEECGGGSHHHHHHHHTCCCSHH
T ss_pred ------------------cCCceEEEECCCCCHH------HHHHHHHHHHHhCCCCEEEECCCCCCCcccccccccCCHH
Confidence 1357889999999987 6666664 7899999999742 224
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc-----------CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHH
Q psy17528 189 HIRTAYNINVKGTQTILALAKRM-----------KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEE 257 (366)
Q Consensus 189 ~~~~~~~~nv~~~~~ll~~a~~~-----------~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~ 257 (366)
.++..+++|+.++..+++++.+. .+..++|++||..++.....
T Consensus 106 ~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~-------------------------- 159 (257)
T 3tl3_A 106 AFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDGQIG-------------------------- 159 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--CCHHH--------------------------
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhcCCCCC--------------------------
Confidence 56788999999999998877642 23458999999876522110
Q ss_pred HHhhhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcce
Q psy17528 258 IALLNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIR 332 (366)
Q Consensus 258 ~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 332 (366)
...|+.+|...+.+.+... +++.+++++||.|.++..... . ...........
T Consensus 160 ------------~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~-------~--~~~~~~~~~~~-- 216 (257)
T 3tl3_A 160 ------------QAAYSASKGGVVGMTLPIARDLASHRIRVMTIAPGLFDTPLLASL-------P--EEARASLGKQV-- 216 (257)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTC----------C--HHHHHHHHHTS--
T ss_pred ------------CccHHHHHHHHHHHHHHHHHHhcccCcEEEEEEecCccChhhhhc-------c--HHHHHHHHhcC--
Confidence 1679999998888887655 689999999999988754321 1 11111111111
Q ss_pred eecCCCCcccCcccHHHHHHHHHHHHHhhhhcC
Q psy17528 333 VVQTDPNISMDVVPGDRVINAMAALAWYFLFSC 365 (366)
Q Consensus 333 ~l~~~~~~~~~~v~vdDva~ai~~~~~~~~~~~ 365 (366)
. ....+...+|+|++++.++..+..+|
T Consensus 217 --~----~~~r~~~p~dva~~v~~l~s~~~itG 243 (257)
T 3tl3_A 217 --P----HPSRLGNPDEYGALAVHIIENPMLNG 243 (257)
T ss_dssp --S----SSCSCBCHHHHHHHHHHHHHCTTCCS
T ss_pred --C----CCCCccCHHHHHHHHHHHhcCCCCCC
Confidence 0 01357899999999999987644343
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-17 Score=154.32 Aligned_cols=213 Identities=15% Similarity=0.068 Sum_probs=142.7
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||.+++++|++.| .+|++++|+... .+.+.+.+ ...
T Consensus 11 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~---~~~~~~~~--------~~~---------------- 60 (267)
T 1iy8_A 11 FTDRVVLITGGGSGLGRATAVRLAAEG---AKLSLVDVSSEG---LEASKAAV--------LET---------------- 60 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHHH--------HHH----------------
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHHH--------Hhh----------------
Confidence 678999999999999999999999998 899999997421 11111111 100
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh--------hhhH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF--------DEHI 190 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~--------~~~~ 190 (366)
. ...++.++.+|+++.+ .+..+++ ++|+||||||.... ...+
T Consensus 61 ---------------~--~~~~~~~~~~D~~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~ 117 (267)
T 1iy8_A 61 ---------------A--PDAEVLTTVADVSDEA------QVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEF 117 (267)
T ss_dssp ---------------C--TTCCEEEEECCTTSHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCCBCGGGSCHHHH
T ss_pred ---------------c--CCceEEEEEccCCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHH
Confidence 0 0246888999999976 6666654 68999999996432 2456
Q ss_pred HHHHHHHHHHHHHHHHHH----HhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 191 RTAYNINVKGTQTILALA----KRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a----~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
+..+++|+.++..+.+.+ ++. +..+||++||..++....
T Consensus 118 ~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~~~~------------------------------------ 160 (267)
T 1iy8_A 118 DKVVSINLRGVFLGLEKVLKIMREQ-GSGMVVNTASVGGIRGIG------------------------------------ 160 (267)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCGGGTSBCS------------------------------------
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEEcchhhccCCC------------------------------------
Confidence 788999999887666544 333 457999999986542210
Q ss_pred CCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCcc-ccccchHHHHHHHHhcCcceeecCCCCc
Q psy17528 267 GGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLW-IKGFNGVMALALGAGTGLIRVVQTDPNI 340 (366)
Q Consensus 267 ~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~l~~~~~~ 340 (366)
....|+.+|...+.+.+... +++++++++||.|+++........ .... ........... ..
T Consensus 161 --~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~--~~~~~~~~~~~---------~p 227 (267)
T 1iy8_A 161 --NQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPEN--PRKAAEEFIQV---------NP 227 (267)
T ss_dssp --SBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTC--HHHHHHHHHTT---------CT
T ss_pred --CCccHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEeCCCcCcchhccccccChhh--hhhHHHHHhcc---------CC
Confidence 01689999999998887654 589999999999987632100000 0000 00000011111 12
Q ss_pred ccCcccHHHHHHHHHHHHHhh
Q psy17528 341 SMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 341 ~~~~v~vdDva~ai~~~~~~~ 361 (366)
...+...+|+|++++.++..+
T Consensus 228 ~~r~~~~~dvA~~v~~l~s~~ 248 (267)
T 1iy8_A 228 SKRYGEAPEIAAVVAFLLSDD 248 (267)
T ss_dssp TCSCBCHHHHHHHHHHHTSGG
T ss_pred CCCCcCHHHHHHHHHHHcCcc
Confidence 245789999999999988654
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.7e-17 Score=153.79 Aligned_cols=206 Identities=16% Similarity=0.053 Sum_probs=144.4
Q ss_pred CCCCeEEEeCCc--chHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 46 YKDQTIFITGAT--GFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 46 ~~~~~ilItGat--G~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
+++++|+||||+ |+||.+++++|++.| .+|++++|+.. ..+.+.++ ...
T Consensus 19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G---~~V~~~~r~~~---~~~~~~~l---------~~~-------------- 69 (285)
T 2p91_A 19 LEGKRALITGVANERSIAYGIAKSFHREG---AQLAFTYATPK---LEKRVREI---------AKG-------------- 69 (285)
T ss_dssp TTTCEEEECCCSSTTSHHHHHHHHHHHTT---CEEEEEESSGG---GHHHHHHH---------HHH--------------
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcC---CEEEEEeCCHH---HHHHHHHH---------HHh--------------
Confidence 668999999999 999999999999998 89999999752 12222221 110
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh----------
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF---------- 186 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~---------- 186 (366)
. ..+.++.+|+++.+ .+..+++ ++|+||||||....
T Consensus 70 -----------------~----~~~~~~~~Dl~~~~------~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~ 122 (285)
T 2p91_A 70 -----------------F----GSDLVVKCDVSLDE------DIKNLKKFLEENWGSLDIIVHSIAYAPKEEFKGGVIDT 122 (285)
T ss_dssp -----------------T----TCCCEEECCTTCHH------HHHHHHHHHHHHTSCCCEEEECCCCCCGGGGSSCGGGC
T ss_pred -----------------c----CCeEEEEcCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCcccCCCCcccC
Confidence 1 13568899999976 6666554 68999999997532
Q ss_pred -hhhHHHHHHHHHHHHHHHHHHHHhcC--CCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhh
Q psy17528 187 -DEHIRTAYNINVKGTQTILALAKRMK--GLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNE 263 (366)
Q Consensus 187 -~~~~~~~~~~nv~~~~~ll~~a~~~~--~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 263 (366)
...++..+++|+.++..+++++.+.. ...+||++||..++....
T Consensus 123 ~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~--------------------------------- 169 (285)
T 2p91_A 123 SREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYGAEKVVP--------------------------------- 169 (285)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGGGTSBCT---------------------------------
T ss_pred CHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccchhccCCC---------------------------------
Confidence 23567789999999999999887541 236999999976542110
Q ss_pred cccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCC
Q psy17528 264 HIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDP 338 (366)
Q Consensus 264 ~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~ 338 (366)
....|+.+|...+.+.+.+. +++++++++||.|+++....... ...+........
T Consensus 170 -----~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~-------~~~~~~~~~~~~-------- 229 (285)
T 2p91_A 170 -----HYNVMGIAKAALESTVRYLAYDIAKHGHRINAISAGPVKTLAAYSITG-------FHLLMEHTTKVN-------- 229 (285)
T ss_dssp -----TTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCSCC--CTT-------HHHHHHHHHHHS--------
T ss_pred -----CccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCcccCchhhcccc-------hHHHHHHHHhcC--------
Confidence 11679999999999887765 58999999999999975432111 111111111111
Q ss_pred CcccCcccHHHHHHHHHHHHHhh
Q psy17528 339 NISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 339 ~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
....+.+++|+|++++.++...
T Consensus 230 -p~~~~~~~~dva~~~~~l~s~~ 251 (285)
T 2p91_A 230 -PFGKPITIEDVGDTAVFLCSDW 251 (285)
T ss_dssp -TTSSCCCHHHHHHHHHHHTSGG
T ss_pred -CCCCCcCHHHHHHHHHHHcCCc
Confidence 1124678999999999988654
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-17 Score=157.61 Aligned_cols=204 Identities=15% Similarity=0.097 Sum_probs=137.2
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.++++++|||||+|+||.+++++|++.| .+|++++|+.. ++.+....
T Consensus 25 ~~~~k~~lVTGas~GIG~aia~~la~~G---~~V~~~~r~~~------~~~~~~~~------------------------ 71 (272)
T 4dyv_A 25 KTGKKIAIVTGAGSGVGRAVAVALAGAG---YGVALAGRRLD------ALQETAAE------------------------ 71 (272)
T ss_dssp ---CCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHHHHH------------------------
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEECCHH------HHHHHHHH------------------------
Confidence 3568999999999999999999999999 88999999742 11111110
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC--------hhhh
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR--------FDEH 189 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~--------~~~~ 189 (366)
...++.++.+|+++.+ .+..+++ ++|++|||||... ....
T Consensus 72 -------------------~~~~~~~~~~Dv~d~~------~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~ 126 (272)
T 4dyv_A 72 -------------------IGDDALCVPTDVTDPD------SVRALFTATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQ 126 (272)
T ss_dssp -------------------HTSCCEEEECCTTSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCSSCGGGCCHHH
T ss_pred -------------------hCCCeEEEEecCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCChhhCCHHH
Confidence 1246788999999986 6666664 7899999999742 1345
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc---CC--CcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhc
Q psy17528 190 IRTAYNINVKGTQTILALAKRM---KG--LKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEH 264 (366)
Q Consensus 190 ~~~~~~~nv~~~~~ll~~a~~~---~~--~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 264 (366)
++..+++|+.++..+.+++.+. .+ ..+||++||..++....
T Consensus 127 ~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~---------------------------------- 172 (272)
T 4dyv_A 127 WKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATSPRP---------------------------------- 172 (272)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTSCCT----------------------------------
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcCCCC----------------------------------
Confidence 6789999999988887765432 12 46899999986652211
Q ss_pred ccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCC
Q psy17528 265 IIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPN 339 (366)
Q Consensus 265 ~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~ 339 (366)
....|+.+|...+.+.+.+. +++.+++++||.|.++....... +..... ...
T Consensus 173 ----~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~-----------------~~~~~~--~~~ 229 (272)
T 4dyv_A 173 ----YSAPYTATKHAITGLTKSTSLDGRVHDIACGQIDIGNADTPMAQKMKA-----------------GVPQAD--LSI 229 (272)
T ss_dssp ----TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEEECC-------------------------------------
T ss_pred ----CchHHHHHHHHHHHHHHHHHHHhCccCEEEEEEEECcccChhhhhhcc-----------------cchhhh--hcc
Confidence 12679999999999987765 68999999999998764321100 000000 011
Q ss_pred cccCcccHHHHHHHHHHHHHhhhh
Q psy17528 340 ISMDVVPGDRVINAMAALAWYFLF 363 (366)
Q Consensus 340 ~~~~~v~vdDva~ai~~~~~~~~~ 363 (366)
....++.++|+|++++.++..+..
T Consensus 230 ~~~~~~~pedvA~~v~fL~s~~~~ 253 (272)
T 4dyv_A 230 KVEPVMDVAHVASAVVYMASLPLD 253 (272)
T ss_dssp ------CHHHHHHHHHHHHHSCTT
T ss_pred cccCCCCHHHHHHHHHHHhCCCCc
Confidence 223478999999999999987754
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-17 Score=153.00 Aligned_cols=195 Identities=14% Similarity=0.151 Sum_probs=138.5
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++++|+||||+|+||.+++++|++.| ++|++++|+....
T Consensus 12 ~l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~------------------------------------ 52 (247)
T 1uzm_A 12 PFVSRSVLVTGGNRGIGLAIAQRLAADG---HKVAVTHRGSGAP------------------------------------ 52 (247)
T ss_dssp CCCCCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESSSCCC------------------------------------
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCChHHH------------------------------------
Confidence 4678999999999999999999999998 8999999975421
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHI 190 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~ 190 (366)
..+..+.+|+++.+ .+..+++ ++|++|||||.... ...+
T Consensus 53 ---------------------~~~~~~~~D~~~~~------~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~ 105 (247)
T 1uzm_A 53 ---------------------KGLFGVEVDVTDSD------AVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKF 105 (247)
T ss_dssp ---------------------TTSEEEECCTTCHH------HHHHHHHHHHHHHSSCSEEEEECSCCC-----CCCHHHH
T ss_pred ---------------------HHhcCeeccCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHH
Confidence 11123789999876 5665554 57999999997532 3456
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 191 RTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
+..+++|+.++..+++.+.+. .+..++|++||..++....
T Consensus 106 ~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------------------------------- 148 (247)
T 1uzm_A 106 EKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGIG------------------------------------- 148 (247)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC------------------------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEECCHhhccCCC-------------------------------------
Confidence 789999999999988876531 2567999999986542110
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
....|+.+|...+.+.+.+. +++++++++||.|.++.... +. .......... ....
T Consensus 149 -~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~-------~~--~~~~~~~~~~---------~p~~ 209 (247)
T 1uzm_A 149 -NQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRA-------LD--ERIQQGALQF---------IPAK 209 (247)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHH-------SC--HHHHHHHGGG---------CTTC
T ss_pred -CChhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCCcccchhh-------cC--HHHHHHHHhc---------CCCC
Confidence 01679999998888887654 58999999999997653110 00 0111111110 1123
Q ss_pred CcccHHHHHHHHHHHHHhh
Q psy17528 343 DVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~ 361 (366)
.+++.+|+|++++.++...
T Consensus 210 ~~~~~~dvA~~~~~l~s~~ 228 (247)
T 1uzm_A 210 RVGTPAEVAGVVSFLASED 228 (247)
T ss_dssp SCBCHHHHHHHHHHHHSGG
T ss_pred CCcCHHHHHHHHHHHcCcc
Confidence 5889999999999988754
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=6.7e-17 Score=151.96 Aligned_cols=211 Identities=13% Similarity=0.109 Sum_probs=142.5
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||.+++++|++.| .+|++++|+... .+.+.+. +..
T Consensus 19 l~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~---~~~~~~~--------~~~----------------- 67 (273)
T 1ae1_A 19 LKGTTALVTGGSKGIGYAIVEELAGLG---ARVYTCSRNEKE---LDECLEI--------WRE----------------- 67 (273)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHH--------HHH-----------------
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHH--------HHh-----------------
Confidence 578999999999999999999999999 889999997421 1111111 111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH--------hCcCEEEEcCcccC-------hhhhH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI--------SQTTIIFHIAATVR-------FDEHI 190 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~--------~~~d~Vih~a~~~~-------~~~~~ 190 (366)
...++.++.+|+++.+ .+..++ .++|++|||||... ....+
T Consensus 68 ------------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~ 123 (273)
T 1ae1_A 68 ------------------KGLNVEGSVCDLLSRT------ERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDY 123 (273)
T ss_dssp ------------------TTCCEEEEECCTTCHH------HHHHHHHHHHHHTTSCCCEEEECCCCCCCCCTTTCCHHHH
T ss_pred ------------------cCCceEEEECCCCCHH------HHHHHHHHHHHHcCCCCcEEEECCCCCCCCChhhCCHHHH
Confidence 1246888999999976 666555 46899999999753 23456
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 191 RTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
+..+++|+.++..+++++.+. .+..+||++||..++....
T Consensus 124 ~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~------------------------------------- 166 (273)
T 1ae1_A 124 NIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALP------------------------------------- 166 (273)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSCCT-------------------------------------
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHhhcCCCC-------------------------------------
Confidence 788899999999998876421 2457999999987653211
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
....|+.+|...+.+.+... +++++++++||.|+++........ .............. ....
T Consensus 167 -~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~---~~~~~~~~~~~~~~---------~p~~ 233 (273)
T 1ae1_A 167 -SVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKK---NPHQKEEIDNFIVK---------TPMG 233 (273)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC----------------CHHHHHHHHHH---------STTC
T ss_pred -CcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCchhhhhhhc---ccCcHHHHHHHHhc---------CCCC
Confidence 11689999999999887765 589999999999998754211000 00000111111111 0123
Q ss_pred CcccHHHHHHHHHHHHHhh
Q psy17528 343 DVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~ 361 (366)
.+.+.+|+|++++.++...
T Consensus 234 r~~~p~dvA~~v~~l~s~~ 252 (273)
T 1ae1_A 234 RAGKPQEVSALIAFLCFPA 252 (273)
T ss_dssp SCBCHHHHHHHHHHHHSGG
T ss_pred CCcCHHHHHHHHHHHhCcc
Confidence 4789999999999988654
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.76 E-value=7e-17 Score=152.02 Aligned_cols=223 Identities=17% Similarity=0.079 Sum_probs=148.4
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCc-------CHHHHHHHHhhhhhhhhhhhcCCCCCCc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGST-------SITQRVYNYFNDAVFDRMRLECPNYADK 116 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~-------~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 116 (366)
..+++|+++||||+|+||.+++++|++.| .+|++++|+.... ...+++.+... .+.
T Consensus 7 ~~l~~k~~lVTGas~GIG~a~a~~la~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-----~~~--------- 69 (277)
T 3tsc_A 7 GKLEGRVAFITGAARGQGRAHAVRMAAEG---ADIIAVDIAGKLPSCVPYDPASPDDLSETVR-----LVE--------- 69 (277)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEECCSCCCTTCCSCCCCHHHHHHHHH-----HHH---------
T ss_pred cccCCCEEEEECCccHHHHHHHHHHHHcC---CEEEEEeccccccccccccccCHHHHHHHHH-----HHH---------
Confidence 34678999999999999999999999999 8999999853210 01122222111 011
Q ss_pred cccccccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh---
Q psy17528 117 VDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF--- 186 (366)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~--- 186 (366)
....++.++.+|+++.+ .+.++++ .+|++|||||....
T Consensus 70 --------------------------~~~~~~~~~~~D~~~~~------~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~ 117 (277)
T 3tsc_A 70 --------------------------AANRRIVAAVVDTRDFD------RLRKVVDDGVAALGRLDIIVANAGVAAPQAW 117 (277)
T ss_dssp --------------------------HTTCCEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCG
T ss_pred --------------------------hcCCeEEEEECCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCh
Confidence 11357889999999976 6666654 58999999997532
Q ss_pred ----hhhHHHHHHHHHHHHHHHHHHHHh----cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHH
Q psy17528 187 ----DEHIRTAYNINVKGTQTILALAKR----MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEI 258 (366)
Q Consensus 187 ----~~~~~~~~~~nv~~~~~ll~~a~~----~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~ 258 (366)
...++..+++|+.++..+++.+.. .+...+||++||..++....
T Consensus 118 ~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------------------------- 169 (277)
T 3tsc_A 118 DDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMKMQP---------------------------- 169 (277)
T ss_dssp GGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCS----------------------------
T ss_pred hhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHhhCCCCC----------------------------
Confidence 345678899999999988887543 22246899999987652211
Q ss_pred HhhhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhc-Ccce
Q psy17528 259 ALLNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGT-GLIR 332 (366)
Q Consensus 259 ~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~ 332 (366)
....|+.+|...+.+.+.+. ++++++.++||.|.++.... ............ ....
T Consensus 170 ----------~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~--------~~~~~~~~~~~~~~~~~ 231 (277)
T 3tsc_A 170 ----------FMIHYTASKHAVTGLARAFAAELGKHSIRVNSVHPGPVNTPMGSG--------DMVTAVGQAMETNPQLS 231 (277)
T ss_dssp ----------SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSGGGSH--------HHHHHHHHHHHTCGGGT
T ss_pred ----------CchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeCCCcCCcccc--------hhhhhhhhcccccHHHH
Confidence 11679999999999887765 58999999999998864321 000001111111 1111
Q ss_pred eecCCCCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 333 VVQTDPNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 333 ~l~~~~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
......... -+...+|+|++++.++....
T Consensus 232 ~~~~~~~p~-r~~~pedvA~~v~~L~s~~~ 260 (277)
T 3tsc_A 232 HVLTPFLPD-WVAEPEDIADTVCWLASDES 260 (277)
T ss_dssp TTTCCSSSC-SCBCHHHHHHHHHHHHSGGG
T ss_pred HHhhhccCC-CCCCHHHHHHHHHHHhCccc
Confidence 111111112 48899999999999987654
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-17 Score=155.86 Aligned_cols=197 Identities=15% Similarity=0.105 Sum_probs=142.2
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++++|+||||+|+||.+++++|++.| .+|++++|+... .+.+.+.+ ..
T Consensus 28 ~l~~k~vlITGasggIG~~la~~L~~~G---~~V~~~~r~~~~---~~~~~~~l--------~~---------------- 77 (272)
T 1yb1_A 28 SVTGEIVLITGAGHGIGRLTAYEFAKLK---SKLVLWDINKHG---LEETAAKC--------KG---------------- 77 (272)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHHH--------HH----------------
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEEcCHHH---HHHHHHHH--------Hh----------------
Confidence 3678999999999999999999999998 889999997421 11111111 11
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHI 190 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~ 190 (366)
...++.++.+|+.+.+ .+..+++ ++|+||||||.... ...+
T Consensus 78 -------------------~~~~~~~~~~Dl~~~~------~v~~~~~~~~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~ 132 (272)
T 1yb1_A 78 -------------------LGAKVHTFVVDCSNRE------DIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQI 132 (272)
T ss_dssp -------------------TTCCEEEEECCTTCHH------HHHHHHHHHHHHTCCCSEEEECCCCCCCCCCGGGHHHHH
T ss_pred -------------------cCCeEEEEEeeCCCHH------HHHHHHHHHHHHCCCCcEEEECCCcCCCcchhhCCHHHH
Confidence 1247889999999876 6666554 68999999997532 2345
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 191 RTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
...+++|+.++..+++.+.+. .+.++||++||..++....+
T Consensus 133 ~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~------------------------------------ 176 (272)
T 1yb1_A 133 EKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSVPF------------------------------------ 176 (272)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CCCHHH------------------------------------
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEechhhcCCCCC------------------------------------
Confidence 678999999988777765431 25679999999876532110
Q ss_pred CCCchHHHHHHHHHHHHHHhc--------CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCC
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG--------HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPN 339 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~--------~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~ 339 (366)
...|+.+|...|.+++.+. .+++++++|||.|.++.... . ..
T Consensus 177 --~~~Y~~sK~a~~~l~~~la~e~~~~~~~gi~v~~v~Pg~v~t~~~~~--------~--------------------~~ 226 (272)
T 1yb1_A 177 --LLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKN--------P--------------------ST 226 (272)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTC--------T--------------------HH
T ss_pred --chhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccc--------c--------------------cc
Confidence 1679999999999887654 27999999999998864210 0 00
Q ss_pred cccCcccHHHHHHHHHHHHHhhh
Q psy17528 340 ISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 340 ~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
....+++.+|+|++++.++..+.
T Consensus 227 ~~~~~~~~~dva~~i~~~~~~~~ 249 (272)
T 1yb1_A 227 SLGPTLEPEEVVNRLMHGILTEQ 249 (272)
T ss_dssp HHCCCCCHHHHHHHHHHHHHTTC
T ss_pred cccCCCCHHHHHHHHHHHHHcCC
Confidence 12357889999999999887654
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-17 Score=157.50 Aligned_cols=207 Identities=14% Similarity=0.058 Sum_probs=146.8
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++|+||||||+|+||.+++++|++.| .+|++++|+.... +.+.+. +
T Consensus 38 ~l~~k~vlVTGas~GIG~aia~~la~~G---~~V~~~~r~~~~~---~~~~~~--------l------------------ 85 (293)
T 3rih_A 38 DLSARSVLVTGGTKGIGRGIATVFARAG---ANVAVAARSPREL---SSVTAE--------L------------------ 85 (293)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESSGGGG---HHHHHH--------H------------------
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEECCHHHH---HHHHHH--------H------------------
Confidence 3578999999999999999999999999 8999999985432 111111 1
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHI 190 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~ 190 (366)
......++.++.+|+++.+ .+..+++ .+|++|||||... ....+
T Consensus 86 ----------------~~~~~~~~~~~~~Dv~d~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~ 143 (293)
T 3rih_A 86 ----------------GELGAGNVIGVRLDVSDPG------SCADAARTVVDAFGALDVVCANAGIFPEARLDTMTPEQL 143 (293)
T ss_dssp ----------------TTSSSSCEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHH
T ss_pred ----------------HhhCCCcEEEEEEeCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHH
Confidence 1111257889999999976 5655553 6799999999753 23466
Q ss_pred HHHHHHHHHHHHHHHHHHH----hcCCCcEEEEeeCccee-cCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcc
Q psy17528 191 RTAYNINVKGTQTILALAK----RMKGLKSFVHVSTAYCN-CDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHI 265 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~----~~~~~~~~v~iSS~~~~-~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (366)
+..+++|+.++..+++++. +. +..+||++||..+. ...
T Consensus 144 ~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iV~isS~~~~~~~~------------------------------------ 186 (293)
T 3rih_A 144 SEVLDVNVKGTVYTVQACLAPLTAS-GRGRVILTSSITGPVTGY------------------------------------ 186 (293)
T ss_dssp HHHHHHHTHHHHHHHHHTHHHHHHH-SSCEEEEECCSBTTTBBC------------------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEEeChhhccCCC------------------------------------
Confidence 7899999999999988763 33 55799999997642 111
Q ss_pred cCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCc
Q psy17528 266 IGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNI 340 (366)
Q Consensus 266 ~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~ 340 (366)
+....|+.+|...+.+.+.+. +|+++++++||.|+++..... . ..+........ .
T Consensus 187 --~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~-------~--~~~~~~~~~~~---------p 246 (293)
T 3rih_A 187 --PGWSHYGASKAAQLGFMRTAAIELAPRGVTVNAILPGNILTEGLVDM-------G--EEYISGMARSI---------P 246 (293)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHT-------C--HHHHHHHHTTS---------T
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCCcCcchhhc-------c--HHHHHHHHhcC---------C
Confidence 011689999999999887655 689999999999998643110 0 11222222221 1
Q ss_pred ccCcccHHHHHHHHHHHHHhhh
Q psy17528 341 SMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 341 ~~~~v~vdDva~ai~~~~~~~~ 362 (366)
...+...+|+|++++.++....
T Consensus 247 ~~r~~~p~dvA~~v~fL~s~~a 268 (293)
T 3rih_A 247 MGMLGSPVDIGHLAAFLATDEA 268 (293)
T ss_dssp TSSCBCHHHHHHHHHHHHSGGG
T ss_pred CCCCCCHHHHHHHHHHHhCccc
Confidence 2346678999999999886543
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-17 Score=154.84 Aligned_cols=207 Identities=11% Similarity=0.116 Sum_probs=143.7
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
.+++++||||+|+||.+++++|++.| .+|+++.|+... ..+.+.+.+
T Consensus 6 ~~k~vlVTGas~gIG~~~a~~l~~~G---~~v~~~~~~~~~--~~~~~~~~~---------------------------- 52 (264)
T 3i4f_A 6 FVRHALITAGTKGLGKQVTEKLLAKG---YSVTVTYHSDTT--AMETMKETY---------------------------- 52 (264)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESSCHH--HHHHHHHHT----------------------------
T ss_pred ccCEEEEeCCCchhHHHHHHHHHHCC---CEEEEEcCCChH--HHHHHHHHH----------------------------
Confidence 46899999999999999999999999 889998887532 112222211
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcc--cC-------hhhhH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAAT--VR-------FDEHI 190 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~--~~-------~~~~~ 190 (366)
.....++.++.+|+++.+ .+..+++ ++|+||||||. .. ....+
T Consensus 53 ---------------~~~~~~~~~~~~Dl~~~~------~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~ 111 (264)
T 3i4f_A 53 ---------------KDVEERLQFVQADVTKKE------DLHKIVEEAMSHFGKIDFLINNAGPYVFERKKLVDYEEDEW 111 (264)
T ss_dssp ---------------GGGGGGEEEEECCTTSHH------HHHHHHHHHHHHHSCCCEEECCCCCCCCSCCCGGGCCHHHH
T ss_pred ---------------HhcCCceEEEEecCCCHH------HHHHHHHHHHHHhCCCCEEEECCcccccCCCccccCCHHHH
Confidence 112357889999999987 6666664 78999999993 21 23456
Q ss_pred HHHHHHHHHHHHHHHHHH----HhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 191 RTAYNINVKGTQTILALA----KRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a----~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
+..+++|+.++..+++.+ ++. +..++|++||........ .
T Consensus 112 ~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~iss~~~~~~~~--------~--------------------------- 155 (264)
T 3i4f_A 112 NEMIQGNLTAVFHLLKLVVPVMRKQ-NFGRIINYGFQGADSAPG--------W--------------------------- 155 (264)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCTTGGGCCC--------C---------------------------
T ss_pred HHHHHhccHHHHHHHHHHHHHHHhc-CCCeEEEEeechhcccCC--------C---------------------------
Confidence 788999999999998877 333 567999999874331110 0
Q ss_pred CCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcc
Q psy17528 267 GGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNIS 341 (366)
Q Consensus 267 ~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~ 341 (366)
.....|+.+|...+.+.+.+. +++++++++||.|+++...... .... .. .......
T Consensus 156 -~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~---------~~~~-~~--------~~~~~p~ 216 (264)
T 3i4f_A 156 -IYRSAFAAAKVGLVSLTKTVAYEEAEYGITANMVCPGDIIGEMKEATI---------QEAR-QL--------KEHNTPI 216 (264)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCGGGGSCCH---------HHHH-HC---------------
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEccCCccCccchhcc---------HHHH-HH--------HhhcCCC
Confidence 011689999999998887655 6899999999999987543210 1111 10 1111223
Q ss_pred cCcccHHHHHHHHHHHHHhhh
Q psy17528 342 MDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 342 ~~~v~vdDva~ai~~~~~~~~ 362 (366)
..+.+.+|+|++++.++....
T Consensus 217 ~r~~~~~dva~~v~~l~s~~~ 237 (264)
T 3i4f_A 217 GRSGTGEDIARTISFLCEDDS 237 (264)
T ss_dssp -CCCCHHHHHHHHHHHHSGGG
T ss_pred CCCcCHHHHHHHHHHHcCccc
Confidence 457899999999999987654
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-17 Score=155.61 Aligned_cols=207 Identities=16% Similarity=0.140 Sum_probs=137.8
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||.+++++|++.| .+|++++|+... .+++.+.
T Consensus 7 l~~k~vlITGas~gIG~~~a~~l~~~G---~~V~~~~r~~~~---~~~~~~~---------------------------- 52 (261)
T 3n74_A 7 LEGKVALITGAGSGFGEGMAKRFAKGG---AKVVIVDRDKAG---AERVAGE---------------------------- 52 (261)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHH----------------------------
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEcCCHHH---HHHHHHH----------------------------
Confidence 568999999999999999999999998 889999997431 1111111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC--------hhhhH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR--------FDEHI 190 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~--------~~~~~ 190 (366)
...++.++.+|+++.+ .+.++++ ++|++|||||... ....+
T Consensus 53 ------------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~ 108 (261)
T 3n74_A 53 ------------------IGDAALAVAADISKEA------DVDAAVEAALSKFGKVDILVNNAGIGHKPQNAELVEPEEF 108 (261)
T ss_dssp ------------------HCTTEEEEECCTTSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCSCCGGGSCHHHH
T ss_pred ------------------hCCceEEEEecCCCHH------HHHHHHHHHHHhcCCCCEEEECCccCCCCCCcccCCHHHH
Confidence 1246889999999976 6666664 6899999999753 23456
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-------CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhh
Q psy17528 191 RTAYNINVKGTQTILALAKRM-------KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNE 263 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~-------~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 263 (366)
+..+++|+.++..+.+.+.+. +...++|++||...+...
T Consensus 109 ~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~---------------------------------- 154 (261)
T 3n74_A 109 DRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGRPR---------------------------------- 154 (261)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTSCC----------------------------------
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcCCC----------------------------------
Confidence 778999999988887766432 114579999998654221
Q ss_pred cccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCC
Q psy17528 264 HIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDP 338 (366)
Q Consensus 264 ~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~ 338 (366)
+....|+.+|...+.+.+.+. +++++++++||.|.++........ . ...........
T Consensus 155 ----~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~---~-----------~~~~~~~~~~~ 216 (261)
T 3n74_A 155 ----PNLAWYNATKGWVVSVTKALAIELAPAKIRVVALNPVAGETPLLTTFMGE---D-----------SEEIRKKFRDS 216 (261)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC---------------------------------------
T ss_pred ----CCccHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccChhhhhhccc---C-----------cHHHHHHHhhc
Confidence 011679999999999887765 689999999999998754321100 0 00000111122
Q ss_pred CcccCcccHHHHHHHHHHHHHhhh
Q psy17528 339 NISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 339 ~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
.....+++.+|+|++++.++....
T Consensus 217 ~~~~~~~~~~dva~~~~~l~s~~~ 240 (261)
T 3n74_A 217 IPMGRLLKPDDLAEAAAFLCSPQA 240 (261)
T ss_dssp CTTSSCCCHHHHHHHHHHHTSGGG
T ss_pred CCcCCCcCHHHHHHHHHHHcCCcc
Confidence 334568999999999999886543
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.6e-17 Score=155.57 Aligned_cols=215 Identities=14% Similarity=0.121 Sum_probs=144.8
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|++|||||+|+||.+++++|++.| .+|++++|+... .+.+.+. +.
T Consensus 22 ~~~k~~lVTGas~GIG~aia~~la~~G---~~V~~~~r~~~~---~~~~~~~--------l~------------------ 69 (279)
T 3sju_A 22 SRPQTAFVTGVSSGIGLAVARTLAARG---IAVYGCARDAKN---VSAAVDG--------LR------------------ 69 (279)
T ss_dssp ---CEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHH--------HH------------------
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHH--------HH------------------
Confidence 457999999999999999999999999 889999997421 1111111 11
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
....++.++.+|+++.+ .+..+++ .+|++|||||... ....++
T Consensus 70 -----------------~~~~~~~~~~~Dv~d~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~ 126 (279)
T 3sju_A 70 -----------------AAGHDVDGSSCDVTSTD------EVHAAVAAAVERFGPIGILVNSAGRNGGGETADLDDALWA 126 (279)
T ss_dssp -----------------TTTCCEEEEECCTTCHH------HHHHHHHHHHHHHCSCCEEEECCCCCCCSCGGGCCHHHHH
T ss_pred -----------------hcCCcEEEEECCCCCHH------HHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHH
Confidence 11357889999999976 6666554 6899999999753 234567
Q ss_pred HHHHHHHHHHHHHHHHHHh---c--CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 192 TAYNINVKGTQTILALAKR---M--KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~---~--~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
..+++|+.++..+.+.+.+ + .+..+||++||..++....
T Consensus 127 ~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS~~~~~~~~------------------------------------ 170 (279)
T 3sju_A 127 DVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIASTGGKQGVM------------------------------------ 170 (279)
T ss_dssp HHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECCGGGTSCCT------------------------------------
T ss_pred HHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECChhhccCCC------------------------------------
Confidence 7899999999999887654 1 2456999999986652211
Q ss_pred CCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCc-cccccc-hHHHHHHHHhcCcceeecCCCC
Q psy17528 267 GGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPL-WIKGFN-GVMALALGAGTGLIRVVQTDPN 339 (366)
Q Consensus 267 ~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~-~~~~~~-~~~~~~~~~~~g~~~~l~~~~~ 339 (366)
....|+.+|...+.+.+... +++++++++||.|.++....... ...... ........... ..
T Consensus 171 --~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 239 (279)
T 3sju_A 171 --YAAPYTASKHGVVGFTKSVGFELAKTGITVNAVCPGYVETPMAERVREGYARHWGVTEQEVHERFNA---------KI 239 (279)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEESSBCSHHHHHHHHSCCSSSCCCHHHHHHHHHT---------TC
T ss_pred --CChhHHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCcccchHHHHHHhhhhhcccCChHHHHHHHHh---------cC
Confidence 12679999998888887655 68999999999998753210000 000000 00111111111 12
Q ss_pred cccCcccHHHHHHHHHHHHHhhh
Q psy17528 340 ISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 340 ~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
....+..++|+|++++.++...+
T Consensus 240 p~~r~~~pedvA~~v~~L~s~~a 262 (279)
T 3sju_A 240 PLGRYSTPEEVAGLVGYLVTDAA 262 (279)
T ss_dssp TTSSCBCHHHHHHHHHHHTSSGG
T ss_pred CCCCCCCHHHHHHHHHHHhCccc
Confidence 33467899999999999887554
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.1e-17 Score=151.90 Aligned_cols=208 Identities=15% Similarity=0.120 Sum_probs=138.9
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
++++|+||||+|+||.+++++|++.| ++|+++.+... ...+.+.+.+. .
T Consensus 25 ~~k~vlITGas~gIG~a~a~~l~~~G---~~V~~~~~~~~--~~~~~~~~~~~--------~------------------ 73 (272)
T 4e3z_A 25 DTPVVLVTGGSRGIGAAVCRLAARQG---WRVGVNYAANR--EAADAVVAAIT--------E------------------ 73 (272)
T ss_dssp CSCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESSCH--HHHHHHHHHHH--------H------------------
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEcCCCh--hHHHHHHHHHH--------h------------------
Confidence 47899999999999999999999999 78877644321 11122222111 1
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh--------hhhHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF--------DEHIR 191 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~--------~~~~~ 191 (366)
...++.++.+|+++.+ .+..+++ ++|+||||||.... ...++
T Consensus 74 -----------------~~~~~~~~~~Dl~~~~------~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~ 130 (272)
T 4e3z_A 74 -----------------SGGEAVAIPGDVGNAA------DIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIE 130 (272)
T ss_dssp -----------------TTCEEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHH
T ss_pred -----------------cCCcEEEEEcCCCCHH------HHHHHHHHHHHhCCCCCEEEECCCCCCCCCChhhCCHHHHH
Confidence 1357889999999976 6666554 68999999997532 34567
Q ss_pred HHHHHHHHHHHHHHHHHHhc------CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcc
Q psy17528 192 TAYNINVKGTQTILALAKRM------KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHI 265 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~------~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (366)
..+++|+.++..+++.+.+. +...+||++||..++....
T Consensus 131 ~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~----------------------------------- 175 (272)
T 4e3z_A 131 RMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGSA----------------------------------- 175 (272)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHHCCT-----------------------------------
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhccCCC-----------------------------------
Confidence 88999999999988876542 1356899999986542210
Q ss_pred cCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCc
Q psy17528 266 IGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNI 340 (366)
Q Consensus 266 ~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~ 340 (366)
.....|+.+|...+.+++.+. .++++++++||.|.++...... . ........ ....
T Consensus 176 --~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~-----~---~~~~~~~~---------~~~~ 236 (272)
T 4e3z_A 176 --TQYVDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIETDLHASGG-----L---PDRAREMA---------PSVP 236 (272)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-----------------------------------CCT
T ss_pred --CCcchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCCcCCcccccC-----C---hHHHHHHh---------hcCC
Confidence 001569999999999887665 5899999999999987543100 0 00111111 1123
Q ss_pred ccCcccHHHHHHHHHHHHHhhh
Q psy17528 341 SMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 341 ~~~~v~vdDva~ai~~~~~~~~ 362 (366)
...+..++|+|++++.++....
T Consensus 237 ~~~~~~~edvA~~i~~l~s~~~ 258 (272)
T 4e3z_A 237 MQRAGMPEEVADAILYLLSPSA 258 (272)
T ss_dssp TSSCBCHHHHHHHHHHHHSGGG
T ss_pred cCCCcCHHHHHHHHHHHhCCcc
Confidence 3457789999999999886543
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.9e-17 Score=153.09 Aligned_cols=208 Identities=11% Similarity=0.076 Sum_probs=143.7
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||.+++++|++.| .+|++++|.... ..+...+. +
T Consensus 23 ~~~k~vlITGas~gIG~~~a~~l~~~G---~~v~~~~~~~~~--~~~~~~~~--------~------------------- 70 (269)
T 3gk3_A 23 QAKRVAFVTGGMGGLGAAISRRLHDAG---MAVAVSHSERND--HVSTWLMH--------E------------------- 70 (269)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHTTT---CEEEEEECSCHH--HHHHHHHH--------H-------------------
T ss_pred hcCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEcCCchH--HHHHHHHH--------H-------------------
Confidence 568999999999999999999999999 889888865321 11111111 0
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
.....++.++.+|+++.+ .+..+++ ++|++|||||... ....++
T Consensus 71 ----------------~~~~~~~~~~~~Dl~~~~------~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~ 128 (269)
T 3gk3_A 71 ----------------RDAGRDFKAYAVDVADFE------SCERCAEKVLADFGKVDVLINNAGITRDATFMKMTKGDWD 128 (269)
T ss_dssp ----------------HTTTCCCEEEECCTTCHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCBCTTTCCHHHHH
T ss_pred ----------------HhcCCceEEEEecCCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCcchhhCCHHHHH
Confidence 112357889999999976 6666554 7899999999753 234567
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
..+++|+.++..+++.+... .+..+||++||..++....
T Consensus 129 ~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------------------------------------- 170 (269)
T 3gk3_A 129 AVMRTDLDAMFNVTKQFIAGMVERRFGRIVNIGSVNGSRGAF-------------------------------------- 170 (269)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCT--------------------------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEeCChhhccCCC--------------------------------------
Confidence 88999999999888876431 2457999999976542211
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
....|+.+|...+.+.+... +++++++++||.|.++....... ...... .........
T Consensus 171 ~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~-------------~~~~~~----~~~~~~~~~ 233 (269)
T 3gk3_A 171 GQANYASAKAGIHGFTKTLALETAKRGITVNTVSPGYLATAMVEAVPQ-------------DVLEAK----ILPQIPVGR 233 (269)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTC--------------------CC----SGGGCTTSS
T ss_pred CcchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCcccchhhhhhch-------------hHHHHH----hhhcCCcCC
Confidence 11689999998888887655 68999999999998875432110 000000 111123345
Q ss_pred cccHHHHHHHHHHHHHhhh
Q psy17528 344 VVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~~~ 362 (366)
+...+|+|++++.++....
T Consensus 234 ~~~p~dvA~~v~~L~s~~~ 252 (269)
T 3gk3_A 234 LGRPDEVAALIAFLCSDDA 252 (269)
T ss_dssp CBCHHHHHHHHHHHTSTTC
T ss_pred ccCHHHHHHHHHHHhCCCc
Confidence 7789999999999887543
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=9.1e-18 Score=155.27 Aligned_cols=208 Identities=12% Similarity=0.091 Sum_probs=143.5
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|+++||||+|+||.+++++|++.| ++|++++|+... +.+ +. .
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~------~~~---------~~-~---------------- 48 (246)
T 2ag5_A 4 LDGKVIILTAAAQGIGQAAALAFAREG---AKVIATDINESK------LQE---------LE-K---------------- 48 (246)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEESCHHH------HGG---------GG-G----------------
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEECCHHH------HHH---------HH-h----------------
Confidence 568999999999999999999999998 899999996321 110 00 0
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH---hCcCEEEEcCcccCh-------hhhHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI---SQTTIIFHIAATVRF-------DEHIRTAYN 195 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~---~~~d~Vih~a~~~~~-------~~~~~~~~~ 195 (366)
. .++.++.+|+++.+ .+.++. .++|+||||||.... ...++..++
T Consensus 49 ---------------~----~~~~~~~~D~~~~~------~~~~~~~~~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~ 103 (246)
T 2ag5_A 49 ---------------Y----PGIQTRVLDVTKKK------QIDQFANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMN 103 (246)
T ss_dssp ---------------S----TTEEEEECCTTCHH------HHHHHHHHCSCCSEEEECCCCCCCBCGGGCCHHHHHHHHH
T ss_pred ---------------c----cCceEEEeeCCCHH------HHHHHHHHhCCCCEEEECCccCCCCCcccCCHHHHHHHHH
Confidence 1 26788999999976 565554 378999999997532 345677899
Q ss_pred HHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCch
Q psy17528 196 INVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNS 272 (366)
Q Consensus 196 ~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (366)
+|+.++..+++++.+. .+..++|++||..++.... .+ ...
T Consensus 104 ~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------~~-----------------------------~~~ 146 (246)
T 2ag5_A 104 LNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKGV--------VN-----------------------------RCV 146 (246)
T ss_dssp HHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBCC--------TT-----------------------------BHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCceEEEEechHhCcCCC--------CC-----------------------------Ccc
Confidence 9999999988876431 2567999999986542210 01 167
Q ss_pred HHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccH
Q psy17528 273 YTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPG 347 (366)
Q Consensus 273 Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~v 347 (366)
|+.+|...|.+.+... ++++++++|||.|+++.... .................. .....++..
T Consensus 147 Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~---~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 214 (246)
T 2ag5_A 147 YSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQE---RIQARGNPEEARNDFLKR---------QKTGRFATA 214 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHH---HHHHSSSHHHHHHHHHHT---------CTTSSCEEH
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCcCcCcchhh---hhhcccCcHHHHHHHHhc---------CCCCCCCCH
Confidence 9999999999987765 58999999999999864210 000000001111111111 112347899
Q ss_pred HHHHHHHHHHHHhhh
Q psy17528 348 DRVINAMAALAWYFL 362 (366)
Q Consensus 348 dDva~ai~~~~~~~~ 362 (366)
+|+|++++.++....
T Consensus 215 ~dvA~~v~~l~s~~~ 229 (246)
T 2ag5_A 215 EEIAMLCVYLASDES 229 (246)
T ss_dssp HHHHHHHHHHHSGGG
T ss_pred HHHHHHHHHHhCccc
Confidence 999999999886543
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-17 Score=155.02 Aligned_cols=202 Identities=17% Similarity=0.147 Sum_probs=141.7
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++|++|||||+|+||.+++++|++.| .+|++++|+....
T Consensus 25 ~l~gk~vlVTGas~gIG~aia~~la~~G---~~V~~~~r~~~~~------------------------------------ 65 (266)
T 3uxy_A 25 GFEGKVALVTGAAGGIGGAVVTALRAAG---ARVAVADRAVAGI------------------------------------ 65 (266)
T ss_dssp -CTTCEEEESSTTSHHHHHHHHHHHHTT---CEEEECSSCCTTS------------------------------------
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHH------------------------------------
Confidence 3678999999999999999999999999 8999999875421
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHI 190 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~ 190 (366)
.....+.+|+.+.+ .+..+++ ++|++|||||... ....+
T Consensus 66 ---------------------~~~~~~~~Dv~~~~------~~~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~ 118 (266)
T 3uxy_A 66 ---------------------AADLHLPGDLREAA------YADGLPGAVAAGLGRLDIVVNNAGVISRGRITETTDADW 118 (266)
T ss_dssp ---------------------CCSEECCCCTTSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCBCGGGCCHHHH
T ss_pred ---------------------HhhhccCcCCCCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHH
Confidence 11133478998875 4554443 7899999999753 23456
Q ss_pred HHHHHHHHHHHHHHHHHHH----hcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 191 RTAYNINVKGTQTILALAK----RMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~----~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
+..+++|+.++..+++++. +. +..++|++||..++....
T Consensus 119 ~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~~~~~~~------------------------------------ 161 (266)
T 3uxy_A 119 SLSLGVNVEAPFRICRAAIPLMAAA-GGGAIVNVASCWGLRPGP------------------------------------ 161 (266)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCSBTTBCCT------------------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEECCHHhCCCCC------------------------------------
Confidence 7889999999999988773 33 567999999987652211
Q ss_pred CCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcc
Q psy17528 267 GGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNIS 341 (366)
Q Consensus 267 ~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~ 341 (366)
....|+.+|...+.+.+.+. +|+++++++||.|.++..... +............... .....
T Consensus 162 --~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~--~~~~~~~~~~~~~~~~---------~~~p~ 228 (266)
T 3uxy_A 162 --GHALYCLTKAALASLTQCMGMDHAPQGIRINAVCPNEVNTPMLRTG--FAKRGFDPDRAVAELG---------RTVPL 228 (266)
T ss_dssp --TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCHHHHHH--HHHTTCCHHHHHHHHH---------TTSTT
T ss_pred --CChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCCCcchHhhhh--hhcccccchHHHHHHH---------hcCCC
Confidence 11679999999999887765 589999999999987632100 0000000011111111 12234
Q ss_pred cCcccHHHHHHHHHHHHHhhh
Q psy17528 342 MDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 342 ~~~v~vdDva~ai~~~~~~~~ 362 (366)
..+.+.+|+|++++.++....
T Consensus 229 ~r~~~pedvA~~v~~L~s~~~ 249 (266)
T 3uxy_A 229 GRIAEPEDIADVVLFLASDAA 249 (266)
T ss_dssp SSCBCHHHHHHHHHHHHSGGG
T ss_pred CCCcCHHHHHHHHHHHhCchh
Confidence 568899999999999887654
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.6e-17 Score=158.40 Aligned_cols=173 Identities=17% Similarity=0.194 Sum_probs=124.1
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
|++++||||||+|+||.+++++|++.| ++|++..|+..... .+++.+... .+..
T Consensus 3 m~~k~vlVTGas~GIG~aia~~L~~~G---~~V~~~~r~~~~r~-~~~~~~l~~-----~~~~----------------- 56 (324)
T 3u9l_A 3 MSKKIILITGASSGFGRLTAEALAGAG---HRVYASMRDIVGRN-ASNVEAIAG-----FARD----------------- 56 (324)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTT---CEEEEEESCTTTTT-HHHHHHHHH-----HHHH-----------------
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEecCcccccC-HHHHHHHHH-----HHHh-----------------
Confidence 457899999999999999999999999 89999999743222 122221110 0111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
...++.++.+|+++.+ .+..+++ ++|+||||||... ....++
T Consensus 57 ------------------~~~~~~~~~~Dvtd~~------~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~ 112 (324)
T 3u9l_A 57 ------------------NDVDLRTLELDVQSQV------SVDRAIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFA 112 (324)
T ss_dssp ------------------HTCCEEEEECCTTCHH------HHHHHHHHHHHHHSCCSEEEECCCCCBCSCGGGSCHHHHH
T ss_pred ------------------cCCcEEEEEeecCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHH
Confidence 1357889999999976 6666665 7899999999642 234567
Q ss_pred HHHHHHHHHHHHHHHHH----HhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 192 TAYNINVKGTQTILALA----KRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a----~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
..+++|+.|+..+++++ ++. +..++|++||..+..... |
T Consensus 113 ~~~~vN~~g~~~l~~a~lp~m~~~-~~g~iV~isS~~~~~~~~---------~--------------------------- 155 (324)
T 3u9l_A 113 ELYDINVLSTQRVNRAALPHMRRQ-KHGLLIWISSSSSAGGTP---------P--------------------------- 155 (324)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTSCCC---------S---------------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEEecchhccCCC---------C---------------------------
Confidence 78999999999998887 333 567999999986542110 0
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCC
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQ 306 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~ 306 (366)
....|+.+|...|.+.+.+. .|+++++++||.|.++..
T Consensus 156 -~~~~Y~asKaa~~~~~~~la~el~~~gI~v~~v~PG~v~t~~~ 198 (324)
T 3u9l_A 156 -YLAPYFAAKAAMDAIAVQYARELSRWGIETSIIVPGAFTSGTN 198 (324)
T ss_dssp -SCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCC-----
T ss_pred -cchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEECCccccCch
Confidence 01679999999999987765 689999999999987643
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.5e-17 Score=153.13 Aligned_cols=207 Identities=10% Similarity=0.060 Sum_probs=143.6
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+.+++|+||||+|+||.+++++|++.| .+|+++.+.... ..+...+ .+..
T Consensus 23 ~l~~k~vlVTGas~gIG~~la~~l~~~G---~~v~i~~~r~~~--~~~~~~~--------~l~~---------------- 73 (267)
T 4iiu_A 23 NAMSRSVLVTGASKGIGRAIARQLAADG---FNIGVHYHRDAA--GAQETLN--------AIVA---------------- 73 (267)
T ss_dssp --CCCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESSCHH--HHHHHHH--------HHHH----------------
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCchH--HHHHHHH--------HHHh----------------
Confidence 3557899999999999999999999999 788776654321 1111111 1111
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHI 190 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~ 190 (366)
...++.++.+|+++.+ ++.++++ .+|+||||||... ....+
T Consensus 74 -------------------~~~~~~~~~~Dl~~~~------~~~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~ 128 (267)
T 4iiu_A 74 -------------------NGGNGRLLSFDVANRE------QCREVLEHEIAQHGAWYGVVSNAGIARDAAFPALSNDDW 128 (267)
T ss_dssp -------------------TTCCEEEEECCTTCHH------HHHHHHHHHHHHHCCCSEEEECCCCCCCCCGGGCCHHHH
T ss_pred -------------------cCCceEEEEecCCCHH------HHHHHHHHHHHHhCCccEEEECCCCCCCCccccCCHHHH
Confidence 1357889999999976 6666654 7899999999753 23456
Q ss_pred HHHHHHHHHHHHHHHHHHHh----cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 191 RTAYNINVKGTQTILALAKR----MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~----~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
+..+++|+.++..+++.+.. ..+..++|++||..++....
T Consensus 129 ~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------------------------------ 172 (267)
T 4iiu_A 129 DAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSSVSGVMGNR------------------------------------ 172 (267)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCHHHHHCCT------------------------------------
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcchHhccCCC------------------------------------
Confidence 78899999999998887631 12567999999976542211
Q ss_pred CCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcc
Q psy17528 267 GGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNIS 341 (366)
Q Consensus 267 ~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~ 341 (366)
....|+.+|...+.+.+... .++++++++||.|.++..... ........... ..
T Consensus 173 --~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~----------~~~~~~~~~~~---------p~ 231 (267)
T 4iiu_A 173 --GQVNYSAAKAGIIGATKALAIELAKRKITVNCIAPGLIDTGMIEME----------ESALKEAMSMI---------PM 231 (267)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCCC----------HHHHHHHHHTC---------TT
T ss_pred --CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeecCCccccc----------HHHHHHHHhcC---------CC
Confidence 12689999998777776555 589999999999998754321 11122222211 12
Q ss_pred cCcccHHHHHHHHHHHHHhhh
Q psy17528 342 MDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 342 ~~~v~vdDva~ai~~~~~~~~ 362 (366)
..+...+|+|++++.++....
T Consensus 232 ~~~~~~edva~~~~~L~s~~~ 252 (267)
T 4iiu_A 232 KRMGQAEEVAGLASYLMSDIA 252 (267)
T ss_dssp CSCBCHHHHHHHHHHHHSGGG
T ss_pred CCCcCHHHHHHHHHHHhCCcc
Confidence 457889999999999887543
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=7.4e-17 Score=150.50 Aligned_cols=209 Identities=12% Similarity=0.046 Sum_probs=147.8
Q ss_pred CCCCeEEEeCCcch--HHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 46 YKDQTIFITGATGF--LGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 46 ~~~~~ilItGatG~--IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
+++++++||||+|+ ||.+++++|++.| .+|+++.|+... .+.+.++...
T Consensus 5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G---~~V~~~~r~~~~---~~~~~~~~~~----------------------- 55 (266)
T 3oig_A 5 LEGRNIVVMGVANKRSIAWGIARSLHEAG---ARLIFTYAGERL---EKSVHELAGT----------------------- 55 (266)
T ss_dssp CTTCEEEEECCCSTTSHHHHHHHHHHHTT---CEEEEEESSGGG---HHHHHHHHHT-----------------------
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHHHCC---CEEEEecCchHH---HHHHHHHHHh-----------------------
Confidence 56899999999988 9999999999999 889999997432 2222221110
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-----------
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR----------- 185 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~----------- 185 (366)
. ...++.++.+|+++.+ .+.++++ .+|++|||||...
T Consensus 56 -----------------~--~~~~~~~~~~D~~~~~------~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~ 110 (266)
T 3oig_A 56 -----------------L--DRNDSIILPCDVTNDA------EIETCFASIKEQVGVIHGIAHCIAFANKEELVGEYLNT 110 (266)
T ss_dssp -----------------S--SSCCCEEEECCCSSSH------HHHHHHHHHHHHHSCCCEEEECCCCCCGGGGSSCGGGC
T ss_pred -----------------c--CCCCceEEeCCCCCHH------HHHHHHHHHHHHhCCeeEEEEccccccccccccchhhc
Confidence 1 1137889999999987 6666554 6899999999753
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhc
Q psy17528 186 FDEHIRTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEH 264 (366)
Q Consensus 186 ~~~~~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 264 (366)
....+...+++|+.++..+++.+... ....++|++||..++... |
T Consensus 111 ~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~----------~------------------------ 156 (266)
T 3oig_A 111 NRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGELVM----------P------------------------ 156 (266)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTSCC----------T------------------------
T ss_pred cHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecccccccC----------C------------------------
Confidence 12345678899999999999988764 223589999998655221 0
Q ss_pred ccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCC
Q psy17528 265 IIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPN 339 (366)
Q Consensus 265 ~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~ 339 (366)
....|+.+|...+.+.+... +++++++++||.|.++...... .............
T Consensus 157 ----~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~-------~~~~~~~~~~~~~--------- 216 (266)
T 3oig_A 157 ----NYNVMGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKGIS-------DFNSILKDIEERA--------- 216 (266)
T ss_dssp ----TTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCT-------THHHHHHHHHHHS---------
T ss_pred ----CcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCccccccccccc-------chHHHHHHHHhcC---------
Confidence 11689999999999887765 5899999999999886443221 1111222221111
Q ss_pred cccCcccHHHHHHHHHHHHHhhh
Q psy17528 340 ISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 340 ~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
....+...+|+|++++.++....
T Consensus 217 ~~~~~~~p~dva~~v~~l~s~~~ 239 (266)
T 3oig_A 217 PLRRTTTPEEVGDTAAFLFSDMS 239 (266)
T ss_dssp TTSSCCCHHHHHHHHHHHHSGGG
T ss_pred CCCCCCCHHHHHHHHHHHcCCch
Confidence 12346789999999999987644
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.9e-17 Score=151.92 Aligned_cols=207 Identities=14% Similarity=0.108 Sum_probs=145.1
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEE-EcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILL-IRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~-~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
++|++|||||+|+||.+++++|++.| .+|+++ .|+... .+.+.+.+.
T Consensus 3 ~~k~vlVTGas~gIG~aia~~l~~~G---~~vv~~~~r~~~~---~~~~~~~~~-------------------------- 50 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAAIRLAENG---YNIVINYARSKKA---ALETAEEIE-------------------------- 50 (258)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHTT---CEEEEEESSCHHH---HHHHHHHHH--------------------------
T ss_pred CCCEEEEecCCchHHHHHHHHHHHCC---CEEEEEcCCCHHH---HHHHHHHHH--------------------------
Confidence 57899999999999999999999999 788876 665321 112211111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
....++.++.+|+++.+ .+..+++ ++|++|||||... ....++
T Consensus 51 -----------------~~~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~ 107 (258)
T 3oid_A 51 -----------------KLGVKVLVVKANVGQPA------KIKEMFQQIDETFGRLDVFVNNAASGVLRPVMELEETHWD 107 (258)
T ss_dssp -----------------TTTCCEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCSCGGGCCHHHHH
T ss_pred -----------------hcCCcEEEEEcCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHH
Confidence 12357889999999986 6666654 5699999999632 134567
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
..+++|+.++..+++.+.+. .+..+||++||...+....
T Consensus 108 ~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~-------------------------------------- 149 (258)
T 3oid_A 108 WTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIRYLE-------------------------------------- 149 (258)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEEEGGGTSBCT--------------------------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhCCCCC--------------------------------------
Confidence 78999999999998876431 2457999999986552211
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
....|+.+|...+.+.+.+. +++++++++||.|.++..... .....+....... .....
T Consensus 150 ~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~-------~~~~~~~~~~~~~---------~p~~r 213 (258)
T 3oid_A 150 NYTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDTDALKHF-------PNREDLLEDARQN---------TPAGR 213 (258)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECCBCSGGGGGC-------TTHHHHHHHHHHH---------CTTSS
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcChhhhhc-------ccCHHHHHHHHhc---------CCCCC
Confidence 12789999999999987766 589999999999988643211 1111122222211 12345
Q ss_pred cccHHHHHHHHHHHHHhhh
Q psy17528 344 VVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~~~ 362 (366)
+.+.+|+|++++.++....
T Consensus 214 ~~~~~dva~~v~~L~s~~~ 232 (258)
T 3oid_A 214 MVEIKDMVDTVEFLVSSKA 232 (258)
T ss_dssp CBCHHHHHHHHHHHTSSTT
T ss_pred CcCHHHHHHHHHHHhCccc
Confidence 7899999999999887643
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-16 Score=149.48 Aligned_cols=224 Identities=14% Similarity=0.038 Sum_probs=149.4
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCc----------CHHHHHHHHhhhhhhhhhhhcCCCC
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGST----------SITQRVYNYFNDAVFDRMRLECPNY 113 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~----------~~~~~i~~~~~~~~~~~~~~~~~~~ 113 (366)
..+++|+++||||+|+||.+++++|++.| .+|++++|+.... ...+++.+... .
T Consensus 7 ~~l~~k~~lVTGas~gIG~aia~~la~~G---~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-------- 70 (286)
T 3uve_A 7 GRVEGKVAFVTGAARGQGRSHAVRLAQEG---ADIIAVDICKPIRAGVVDTAIPASTPEDLAETAD-----L-------- 70 (286)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHH-----H--------
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCC---CeEEEEeccccccccccccccccCCHHHHHHHHH-----H--------
Confidence 45678999999999999999999999999 8999999974211 11222222111 0
Q ss_pred CCccccccccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-
Q psy17528 114 ADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR- 185 (366)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~- 185 (366)
......++.++.+|+++.+ .+..+++ .+|++|||||...
T Consensus 71 ---------------------------~~~~~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~ 117 (286)
T 3uve_A 71 ---------------------------VKGHNRRIVTAEVDVRDYD------ALKAAVDSGVEQLGRLDIIVANAGIGNG 117 (286)
T ss_dssp ---------------------------HHTTTCCEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCC
T ss_pred ---------------------------HhhcCCceEEEEcCCCCHH------HHHHHHHHHHHHhCCCCEEEECCcccCC
Confidence 1112357899999999986 6666654 7899999999742
Q ss_pred -------hhhhHHHHHHHHHHHHHHHHHHHHhc----CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcc
Q psy17528 186 -------FDEHIRTAYNINVKGTQTILALAKRM----KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHAS 254 (366)
Q Consensus 186 -------~~~~~~~~~~~nv~~~~~ll~~a~~~----~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~ 254 (366)
....++..+++|+.++..+++++.+. +...+||++||..++....
T Consensus 118 ~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------------------ 173 (286)
T 3uve_A 118 GDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSVGGLKAYP------------------------ 173 (286)
T ss_dssp CSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCT------------------------
T ss_pred CCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECchhhccCCC------------------------
Confidence 12456789999999999988876532 2246899999987652211
Q ss_pred hHHHHhhhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCcc---ccc--cchHHHHHH
Q psy17528 255 DEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLW---IKG--FNGVMALAL 324 (366)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~---~~~--~~~~~~~~~ 324 (366)
....|+.+|...+.+.+.+. +++.+++++||.|.++.......+ ... ...... ..
T Consensus 174 --------------~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~-~~ 238 (286)
T 3uve_A 174 --------------HTGHYVAAKHGVVGLMRAFGVELGQHMIRVNSVHPTHVKTPMLHNEGTFKMFRPDLENPGPDD-MA 238 (286)
T ss_dssp --------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSTTTSSHHHHHHHCTTSSSCCHHH-HH
T ss_pred --------------CccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCCcccccchhhhccccccccchhh-HH
Confidence 12679999999998887665 689999999999998754321000 000 000000 00
Q ss_pred HHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 325 GAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 325 ~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
.... ...... ..+.+.+|+|++++.++...+
T Consensus 239 ~~~~------~~~~~p-~r~~~p~dvA~~v~fL~s~~a 269 (286)
T 3uve_A 239 PICQ------MFHTLP-IPWVEPIDISNAVLFFASDEA 269 (286)
T ss_dssp HHHH------TTCSSS-CSCBCHHHHHHHHHHHHSGGG
T ss_pred HHHH------hhhccC-CCcCCHHHHHHHHHHHcCccc
Confidence 0000 001111 568899999999999886543
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.2e-17 Score=155.32 Aligned_cols=210 Identities=13% Similarity=0.103 Sum_probs=140.2
Q ss_pred cccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccc
Q psy17528 43 QEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGIT 122 (366)
Q Consensus 43 ~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (366)
...+++|++|||||+|+||.+++++|++.| .+|++++|+... .+.+.+.+. ..
T Consensus 28 ~~~l~gk~~lVTGas~GIG~aia~~la~~G---~~V~~~~r~~~~---~~~~~~~~~--------~~------------- 80 (281)
T 4dry_A 28 KGSGEGRIALVTGGGTGVGRGIAQALSAEG---YSVVITGRRPDV---LDAAAGEIG--------GR------------- 80 (281)
T ss_dssp ------CEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHHHH--------HH-------------
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHH---HHHHHHHHH--------hc-------------
Confidence 345678999999999999999999999999 899999997432 112211111 10
Q ss_pred cccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC--------hh
Q psy17528 123 HRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR--------FD 187 (366)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~--------~~ 187 (366)
....+.++.+|+++.+ ++..+++ .+|++|||||... ..
T Consensus 81 ---------------------~~~~~~~~~~Dv~d~~------~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~ 133 (281)
T 4dry_A 81 ---------------------TGNIVRAVVCDVGDPD------QVAALFAAVRAEFARLDLLVNNAGSNVPPVPLEEVTF 133 (281)
T ss_dssp ---------------------HSSCEEEEECCTTCHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCCCCGGGCCH
T ss_pred ---------------------CCCeEEEEEcCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCH
Confidence 0134688999999986 6666554 6799999999742 13
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh----cC-CCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhh
Q psy17528 188 EHIRTAYNINVKGTQTILALAKR----MK-GLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLN 262 (366)
Q Consensus 188 ~~~~~~~~~nv~~~~~ll~~a~~----~~-~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 262 (366)
..++..+++|+.++..+.+.+.+ .+ ...+||++||...+...
T Consensus 134 ~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~--------------------------------- 180 (281)
T 4dry_A 134 EQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQTPR--------------------------------- 180 (281)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGTCCC---------------------------------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhCCCC---------------------------------
Confidence 45678999999998887776543 21 24689999998654221
Q ss_pred hcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCC
Q psy17528 263 EHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTD 337 (366)
Q Consensus 263 ~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~ 337 (366)
.....|+.+|...+.+.+... +++.+++++||.|.++...... .. ..... .
T Consensus 181 -----~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~-----------------~~-~~~~~-~ 236 (281)
T 4dry_A 181 -----PNSAPYTATKHAITGLTKSTALDGRMHDIACGQIDIGNAATDMTARMS-----------------TG-VLQAN-G 236 (281)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEECBCC------------------------CE-EECTT-S
T ss_pred -----CCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcCcChhhhhhc-----------------ch-hhhhh-h
Confidence 012689999999998887665 6899999999999876432110 00 00000 0
Q ss_pred CCcccCcccHHHHHHHHHHHHHhhhh
Q psy17528 338 PNISMDVVPGDRVINAMAALAWYFLF 363 (366)
Q Consensus 338 ~~~~~~~v~vdDva~ai~~~~~~~~~ 363 (366)
......++..+|+|++++.++..+..
T Consensus 237 ~~~~~~~~~pedvA~~v~fL~s~~~~ 262 (281)
T 4dry_A 237 EVAAEPTIPIEHIAEAVVYMASLPLS 262 (281)
T ss_dssp CEEECCCBCHHHHHHHHHHHHHSCTT
T ss_pred cccccCCCCHHHHHHHHHHHhCCCcc
Confidence 11223478999999999999987754
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-17 Score=151.91 Aligned_cols=194 Identities=15% Similarity=0.135 Sum_probs=138.1
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
|+++++|||||+|+||.+++++|++.| .+|++++|+... .+.+.+.+
T Consensus 1 Ms~k~vlVTGas~GIG~a~a~~l~~~G---~~V~~~~r~~~~---~~~~~~~~--------------------------- 47 (235)
T 3l6e_A 1 MSLGHIIVTGAGSGLGRALTIGLVERG---HQVSMMGRRYQR---LQQQELLL--------------------------- 47 (235)
T ss_dssp --CCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHHH---------------------------
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEECCHHH---HHHHHHHh---------------------------
Confidence 457899999999999999999999999 899999997421 11111110
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
..++.++.+|+++.+ ++..+++ .+|++|||||... ....++
T Consensus 48 -------------------~~~~~~~~~D~~~~~------~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~ 102 (235)
T 3l6e_A 48 -------------------GNAVIGIVADLAHHE------DVDVAFAAAVEWGGLPELVLHCAGTGEFGPVGVYTAEQIR 102 (235)
T ss_dssp -------------------GGGEEEEECCTTSHH------HHHHHHHHHHHHHCSCSEEEEECCCC------CCCHHHHH
T ss_pred -------------------cCCceEEECCCCCHH------HHHHHHHHHHHhcCCCcEEEECCCCCCCCChHhCCHHHHH
Confidence 125789999999976 6666554 6799999999743 234567
Q ss_pred HHHHHHHHHHHHHHHHHHhc--CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCC
Q psy17528 192 TAYNINVKGTQTILALAKRM--KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGK 269 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~--~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (366)
..+++|+.++..+.+.+.+. ....++|++||..++.... .
T Consensus 103 ~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~~~~--------------------------------------~ 144 (235)
T 3l6e_A 103 RVMESNLVSTILVAQQTVRLIGERGGVLANVLSSAAQVGKA--------------------------------------N 144 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECCSSCS--------------------------------------S
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHHhcCCCC--------------------------------------C
Confidence 89999999998888876542 1223899999986552211 0
Q ss_pred CchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCc
Q psy17528 270 PNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDV 344 (366)
Q Consensus 270 ~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~ 344 (366)
...|+.+|...+.+.+.+. +++.++.++||.|..+..... . . .....+
T Consensus 145 ~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~-------~----------~----------~~~~~~ 197 (235)
T 3l6e_A 145 ESLYCASKWGMRGFLESLRAELKDSPLRLVNLYPSGIRSEFWDNT-------D----------H----------VDPSGF 197 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEEECCCC--------------------------------------C
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhccCCEEEEEeCCCccCcchhcc-------C----------C----------CCCcCC
Confidence 1679999999999887765 689999999999976532110 0 0 011257
Q ss_pred ccHHHHHHHHHHHHHhhh
Q psy17528 345 VPGDRVINAMAALAWYFL 362 (366)
Q Consensus 345 v~vdDva~ai~~~~~~~~ 362 (366)
+..+|+|++++.++..+.
T Consensus 198 ~~pedvA~~v~~l~~~~~ 215 (235)
T 3l6e_A 198 MTPEDAAAYMLDALEARS 215 (235)
T ss_dssp BCHHHHHHHHHHHTCCCS
T ss_pred CCHHHHHHHHHHHHhCCC
Confidence 899999999999987554
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=4.6e-17 Score=154.57 Aligned_cols=215 Identities=12% Similarity=0.125 Sum_probs=145.2
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
..+++++|+||||+|+||++++++|++.| ++|++++|+... .+.+.+ .+...
T Consensus 14 ~~l~~k~vlVTGasggIG~~la~~l~~~G---~~V~~~~r~~~~---~~~~~~--------~l~~~-------------- 65 (303)
T 1yxm_A 14 GLLQGQVAIVTGGATGIGKAIVKELLELG---SNVVIASRKLER---LKSAAD--------ELQAN-------------- 65 (303)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHH--------HHHHT--------------
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHH--------HHHhh--------------
Confidence 34678999999999999999999999998 889999997421 111111 11110
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhh
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEH 189 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~ 189 (366)
.......++.++.+|+++.+ .+..+++ ++|+||||||... ....
T Consensus 66 ----------------~~~~~~~~~~~~~~D~~~~~------~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~ 123 (303)
T 1yxm_A 66 ----------------LPPTKQARVIPIQCNIRNEE------EVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKG 123 (303)
T ss_dssp ----------------SCTTCCCCEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHH
T ss_pred ----------------ccccCCccEEEEecCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHH
Confidence 00112357899999999876 6666664 5899999999542 1245
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 190 IRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 190 ~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
++..+++|+.++..+++++.+. .+..++|++||.. .... |
T Consensus 124 ~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~-~~~~----------~-------------------------- 166 (303)
T 1yxm_A 124 WHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPT-KAGF----------P-------------------------- 166 (303)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCC-TTCC----------T--------------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEeec-ccCC----------C--------------------------
Confidence 6778999999999999987551 1346899999976 2111 0
Q ss_pred CCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCC-CCCCccccccchHHHHHHHHhcCcceeecCCCCc
Q psy17528 267 GGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQ-EPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNI 340 (366)
Q Consensus 267 ~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~ 340 (366)
....|+.+|...+.+.+... .+++++++|||.|+|+.. .....+.. ...... . ....
T Consensus 167 --~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~----------~~~~~~----~-~~~p 229 (303)
T 1yxm_A 167 --LAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQ----------SFFEGS----F-QKIP 229 (303)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGG----------GGGTTG----G-GGST
T ss_pred --cchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCcccchhhhhccccch----------HHHHHH----H-hcCc
Confidence 01579999999988887665 489999999999999842 11110000 000000 0 0011
Q ss_pred ccCcccHHHHHHHHHHHHHhhh
Q psy17528 341 SMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 341 ~~~~v~vdDva~ai~~~~~~~~ 362 (366)
...+++++|+|++++.++....
T Consensus 230 ~~~~~~~~dvA~~i~~l~~~~~ 251 (303)
T 1yxm_A 230 AKRIGVPEEVSSVVCFLLSPAA 251 (303)
T ss_dssp TSSCBCTHHHHHHHHHHHSGGG
T ss_pred ccCCCCHHHHHHHHHHHhCccc
Confidence 2348899999999999886543
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.75 E-value=8.1e-17 Score=147.11 Aligned_cols=188 Identities=16% Similarity=0.085 Sum_probs=129.8
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+++|+||||+|+||++++++|++.| ++|++++|+.. ++.+.. ..
T Consensus 5 ~k~vlVtGasggiG~~~a~~l~~~G---~~V~~~~r~~~------~~~~~~---------~~------------------ 48 (234)
T 2ehd_A 5 KGAVLITGASRGIGEATARLLHAKG---YRVGLMARDEK------RLQALA---------AE------------------ 48 (234)
T ss_dssp CCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHHH---------HH------------------
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEECCHH------HHHHHH---------HH------------------
Confidence 5789999999999999999999998 88999999642 111110 00
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIRTA 193 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~~~ 193 (366)
. .++.++.+|+.+.+ .+.++++ ++|+|||+||... ....++..
T Consensus 49 -------------~----~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~ 105 (234)
T 2ehd_A 49 -------------L----EGALPLPGDVREEG------DWARAVAAMEEAFGELSALVNNAGVGVMKPVHELTLEEWRLV 105 (234)
T ss_dssp -------------S----TTCEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCSCGGGCCHHHHHHH
T ss_pred -------------h----hhceEEEecCCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHH
Confidence 1 25778899999876 5655553 6899999999643 23456778
Q ss_pred HHHHHHHHHHHHHHH----HhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCC
Q psy17528 194 YNINVKGTQTILALA----KRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGK 269 (366)
Q Consensus 194 ~~~nv~~~~~ll~~a----~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (366)
+++|+.++..+++.+ ++. +.++||++||..++.... .
T Consensus 106 ~~~N~~~~~~~~~~~~~~~~~~-~~~~iv~isS~~~~~~~~--------------------------------------~ 146 (234)
T 2ehd_A 106 LDTNLTGAFLGIRHAVPALLRR-GGGTIVNVGSLAGKNPFK--------------------------------------G 146 (234)
T ss_dssp HHHHTHHHHHHHHHHHHHHHTT-TCEEEEEECCTTTTSCCT--------------------------------------T
T ss_pred HHHHhHHHHHHHHHHHHHHHhC-CCcEEEEECCchhcCCCC--------------------------------------C
Confidence 999999987666544 333 568999999986552210 1
Q ss_pred CchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCc
Q psy17528 270 PNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDV 344 (366)
Q Consensus 270 ~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~ 344 (366)
...|+.+|...+.+.+... ++++++++|||.|.++.... . .. . ..+
T Consensus 147 ~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-------~-----------~~---~--------~~~ 197 (234)
T 2ehd_A 147 GAAYNASKFGLLGLAGAAMLDLREANVRVVNVLPGSVDTGFAGN-------T-----------PG---Q--------AWK 197 (234)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEECC---------------------------------------------
T ss_pred CchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCcccc-------c-----------cc---c--------cCC
Confidence 1689999998888776554 68999999999987653210 0 00 0 015
Q ss_pred ccHHHHHHHHHHHHHhhh
Q psy17528 345 VPGDRVINAMAALAWYFL 362 (366)
Q Consensus 345 v~vdDva~ai~~~~~~~~ 362 (366)
+..+|+|++++.++..+.
T Consensus 198 ~~~~dvA~~~~~l~~~~~ 215 (234)
T 2ehd_A 198 LKPEDVAQAVLFALEMPG 215 (234)
T ss_dssp CCHHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHhCCCc
Confidence 789999999999987653
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.5e-17 Score=152.33 Aligned_cols=212 Identities=14% Similarity=0.082 Sum_probs=143.2
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+|+++||||+|+||.+++++|++.| .+|++++|+..... .+.+.+.+ .
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~-~~~~~~~~--------~-------------------- 49 (258)
T 3a28_C 2 SKVAMVTGGAQGIGRGISEKLAADG---FDIAVADLPQQEEQ-AAETIKLI--------E-------------------- 49 (258)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHT---CEEEEEECGGGHHH-HHHHHHHH--------H--------------------
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCcchHH-HHHHHHHH--------H--------------------
Confidence 6899999999999999999999999 88999999753200 11111111 0
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIRTA 193 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~~~ 193 (366)
....++.++.+|+++.+ .+..+++ ++|++|||||.... ...++..
T Consensus 50 ---------------~~~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~ 108 (258)
T 3a28_C 50 ---------------AADQKAVFVGLDVTDKA------NFDSAIDEAAEKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQI 108 (258)
T ss_dssp ---------------TTTCCEEEEECCTTCHH------HHHHHHHHHHHHHTCCCEEEECCCCCCCCCGGGCCHHHHHHH
T ss_pred ---------------hcCCcEEEEEccCCCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHH
Confidence 01256889999999976 6666554 78999999997532 2456788
Q ss_pred HHHHHHHHHHHHHHHHhc---CCC-cEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCC
Q psy17528 194 YNINVKGTQTILALAKRM---KGL-KSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGK 269 (366)
Q Consensus 194 ~~~nv~~~~~ll~~a~~~---~~~-~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (366)
+++|+.++..+++.+.+. .+. .+||++||..++.... .
T Consensus 109 ~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------------------------------------~ 150 (258)
T 3a28_C 109 YSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQGFP--------------------------------------I 150 (258)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGTSCCT--------------------------------------T
T ss_pred HHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcchhccCCC--------------------------------------C
Confidence 999999999888876542 144 7999999986542210 1
Q ss_pred CchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCcccccc-----chHHHHHHHHhcCcceeecCCCC
Q psy17528 270 PNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGF-----NGVMALALGAGTGLIRVVQTDPN 339 (366)
Q Consensus 270 ~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~l~~~~~ 339 (366)
...|+.+|...+.+.+.+. +++++++++||.|.++.... +...+ ........... ...
T Consensus 151 ~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~---~~~~~~~~~~~~~~~~~~~~~---------~~~ 218 (258)
T 3a28_C 151 LSAYSTTKFAVRGLTQAAAQELAPKGHTVNAYAPGIVGTGMWEQ---IDAELSKINGKPIGENFKEYS---------SSI 218 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSHHHHH---HHHHHHHHHCCCTTHHHHHHH---------TTC
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhCeEEEEEECCccCChhhhh---hhhhhccccCCchHHHHHHHH---------hcC
Confidence 1689999999999887765 68999999999997652110 00000 00000001111 111
Q ss_pred cccCcccHHHHHHHHHHHHHhhh
Q psy17528 340 ISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 340 ~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
....+...+|+|++++.++....
T Consensus 219 p~~r~~~p~dvA~~v~~l~s~~~ 241 (258)
T 3a28_C 219 ALGRPSVPEDVAGLVSFLASENS 241 (258)
T ss_dssp TTSSCBCHHHHHHHHHHHHSGGG
T ss_pred CCCCccCHHHHHHHHHHHhCccc
Confidence 22358899999999999886553
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=6.3e-17 Score=148.11 Aligned_cols=199 Identities=16% Similarity=0.072 Sum_probs=143.6
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
++|+++||||+|+||.+++++|++.| .+|++++|+... .+.+.+.+ ..
T Consensus 1 ~~k~vlITGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~---~~~~~~~~--------~~------------------ 48 (235)
T 3l77_A 1 EMKVAVITGASRGIGEAIARALARDG---YALALGARSVDR---LEKIAHEL--------MQ------------------ 48 (235)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHHH--------HH------------------
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHHH--------Hh------------------
Confidence 37899999999999999999999999 889999997431 11111111 10
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIRT 192 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~~ 192 (366)
....++.++.+|+++.+ .+.++++ ++|++|||||... ....++.
T Consensus 49 ----------------~~~~~~~~~~~D~~~~~------~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~ 106 (235)
T 3l77_A 49 ----------------EQGVEVFYHHLDVSKAE------SVEEFSKKVLERFGDVDVVVANAGLGYFKRLEELSEEEFHE 106 (235)
T ss_dssp ----------------HHCCCEEEEECCTTCHH------HHHHHCC-HHHHHSSCSEEEECCCCCCCCCTTTSCHHHHHH
T ss_pred ----------------hcCCeEEEEEeccCCHH------HHHHHHHHHHHhcCCCCEEEECCccccccCcccCCHHHHHH
Confidence 01357889999999987 6776665 6899999999753 2345678
Q ss_pred HHHHHHHHHHHHHHHHHhc--CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCC
Q psy17528 193 AYNINVKGTQTILALAKRM--KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKP 270 (366)
Q Consensus 193 ~~~~nv~~~~~ll~~a~~~--~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (366)
.+++|+.++..+++.+.+. .+..++|++||....... +..
T Consensus 107 ~~~~N~~g~~~l~~~~~~~~~~~~~~ii~~sS~~~~~~~--------------------------------------~~~ 148 (235)
T 3l77_A 107 MIEVNLLGVWRTLKAFLDSLKRTGGLALVTTSDVSARLI--------------------------------------PYG 148 (235)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSCC--------------------------------------TTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcEEEEecchhcccC--------------------------------------CCc
Confidence 8999999999988876542 123477787776543111 012
Q ss_pred chHHHHHHHHHHHHHHhc---CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccH
Q psy17528 271 NSYTLTKATAEDLVRQVG---HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPG 347 (366)
Q Consensus 271 ~~Y~~sK~~~E~~l~~~~---~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~v 347 (366)
..|+.+|...+.+.+.+. +++++++++||.|..+....... ......++..
T Consensus 149 ~~Y~~sKaa~~~~~~~l~~~~~~i~v~~v~PG~v~T~~~~~~~~--------------------------~~~~~~~~~p 202 (235)
T 3l77_A 149 GGYVSTKWAARALVRTFQIENPDVRFFELRPGAVDTYFGGSKPG--------------------------KPKEKGYLKP 202 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTSEEEEEEECSBSSSTTTCCSC--------------------------CCGGGTCBCH
T ss_pred chHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCccccccccccCC--------------------------cccccCCCCH
Confidence 679999999999998765 68999999999998764321110 1112257889
Q ss_pred HHHHHHHHHHHHhhhh
Q psy17528 348 DRVINAMAALAWYFLF 363 (366)
Q Consensus 348 dDva~ai~~~~~~~~~ 363 (366)
+|+|++++.++..+..
T Consensus 203 ~dva~~v~~l~~~~~~ 218 (235)
T 3l77_A 203 DEIAEAVRCLLKLPKD 218 (235)
T ss_dssp HHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHcCCCC
Confidence 9999999999987653
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=4.7e-17 Score=151.30 Aligned_cols=213 Identities=15% Similarity=0.111 Sum_probs=141.7
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+|+++||||+|+||.+++++|++.| ++|++++|+... .+.+.+. +..
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~---~~~~~~~--------~~~------------------- 48 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKDG---FAVAIADYNDAT---AKAVASE--------INQ------------------- 48 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHH--------HHH-------------------
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHH--------HHh-------------------
Confidence 5799999999999999999999998 889999997421 1111111 111
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIRTA 193 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~~~ 193 (366)
...++.++.+|+++.+ .+.++++ ++|++|||||... ....++..
T Consensus 49 ----------------~~~~~~~~~~D~~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~ 106 (256)
T 1geg_A 49 ----------------AGGHAVAVKVDVSDRD------QVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKV 106 (256)
T ss_dssp ----------------TTCCEEEEECCTTSHH------HHHHHHHHHHHHTTCCCEEEECCCCCCCBCGGGCCHHHHHHH
T ss_pred ----------------cCCcEEEEEecCCCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHH
Confidence 1246888999999976 6666665 7899999999643 12456778
Q ss_pred HHHHHHHHHHHHHHHHhc---CC-CcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCC
Q psy17528 194 YNINVKGTQTILALAKRM---KG-LKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGK 269 (366)
Q Consensus 194 ~~~nv~~~~~ll~~a~~~---~~-~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (366)
+++|+.++..+.+.+.+. .+ ..++|++||...+.... .
T Consensus 107 ~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------------------------------------~ 148 (256)
T 1geg_A 107 YNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGNP--------------------------------------E 148 (256)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCT--------------------------------------T
T ss_pred HHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC--------------------------------------C
Confidence 999999988887765432 13 57999999986542110 0
Q ss_pred CchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHh--cCcceeecCCCCccc
Q psy17528 270 PNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAG--TGLIRVVQTDPNISM 342 (366)
Q Consensus 270 ~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~l~~~~~~~~ 342 (366)
...|+.+|...+.+.+.+. +++++++++||.|.++.... .. ..+..... .......+.......
T Consensus 149 ~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~-------~~--~~~~~~~~~~~~~~~~~~~~~~p~~ 219 (256)
T 1geg_A 149 LAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWAE-------ID--RQVSEAAGKPLGYGTAEFAKRITLG 219 (256)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHH-------HH--HHHHHHHTCCTTHHHHHHHTTCTTC
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCCccchhhh-------hh--hhccccccCChHHHHHHHHhcCCCC
Confidence 1679999999998887755 58999999999998753110 00 00000000 000000000111123
Q ss_pred CcccHHHHHHHHHHHHHhhh
Q psy17528 343 DVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~~ 362 (366)
.+.+.+|+|++++.++....
T Consensus 220 r~~~p~dvA~~v~~l~s~~~ 239 (256)
T 1geg_A 220 RLSEPEDVAACVSYLASPDS 239 (256)
T ss_dssp SCBCHHHHHHHHHHHHSGGG
T ss_pred CCcCHHHHHHHHHHHhCccc
Confidence 58899999999999886553
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.4e-17 Score=152.19 Aligned_cols=209 Identities=13% Similarity=0.096 Sum_probs=146.7
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|++|||||+|+||.+++++|++.| .+|++++|+... .+...+.+ ...
T Consensus 18 l~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~---~~~~~~~l--------~~~---------------- 67 (266)
T 4egf_A 18 LDGKRALITGATKGIGADIARAFAAAG---ARLVLSGRDVSE---LDAARRAL--------GEQ---------------- 67 (266)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHHH--------HHH----------------
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHHH--------HHh----------------
Confidence 578999999999999999999999999 889999997432 11111111 110
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
...++.++.+|+++.+ .+..+++ ++|++|||||... ....++
T Consensus 68 ------------------~~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~ 123 (266)
T 4egf_A 68 ------------------FGTDVHTVAIDLAEPD------APAELARRAAEAFGGLDVLVNNAGISHPQPVVDTDPQLFD 123 (266)
T ss_dssp ------------------HCCCEEEEECCTTSTT------HHHHHHHHHHHHHTSCSEEEEECCCCCCCCGGGCCHHHHH
T ss_pred ------------------cCCcEEEEEecCCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHH
Confidence 1257889999999987 6666554 7899999999753 234567
Q ss_pred HHHHHHHHHHHHHHHHHHh----cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 192 TAYNINVKGTQTILALAKR----MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~----~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
..+++|+.++..+.+++.+ .+...++|++||...+....
T Consensus 124 ~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------------------------------- 166 (266)
T 4egf_A 124 ATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALAPLP------------------------------------- 166 (266)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCT-------------------------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhccCCC-------------------------------------
Confidence 7899999999988887643 22246899999987652211
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
....|+.+|...+.+.+.+. +++++++++||.|.++.... .............. ....
T Consensus 167 -~~~~Y~asK~a~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~-------~~~~~~~~~~~~~~---------~p~~ 229 (266)
T 4egf_A 167 -DHYAYCTSKAGLVMATKVLARELGPHGIRANSVCPTVVLTEMGQR-------VWGDEAKSAPMIAR---------IPLG 229 (266)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBCSHHHHH-------HTCSHHHHHHHHTT---------CTTS
T ss_pred -CChHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCchhhh-------hccChHHHHHHHhc---------CCCC
Confidence 11689999999998887765 68999999999998763210 00001111111211 2234
Q ss_pred CcccHHHHHHHHHHHHHhhh
Q psy17528 343 DVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~~ 362 (366)
.+...+|+|++++.++....
T Consensus 230 r~~~p~dva~~v~~L~s~~~ 249 (266)
T 4egf_A 230 RFAVPHEVSDAVVWLASDAA 249 (266)
T ss_dssp SCBCHHHHHHHHHHHHSGGG
T ss_pred CCcCHHHHHHHHHHHhCchh
Confidence 57889999999999887643
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.4e-17 Score=153.85 Aligned_cols=207 Identities=12% Similarity=0.111 Sum_probs=142.4
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++|+||||+|+||.+++++|++.| ++|++++|+... .+.+.+. +
T Consensus 27 l~~k~vlVTGas~gIG~aia~~L~~~G---~~V~~~~r~~~~---~~~~~~~--------l------------------- 73 (276)
T 2b4q_A 27 LAGRIALVTGGSRGIGQMIAQGLLEAG---ARVFICARDAEA---CADTATR--------L------------------- 73 (276)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEECSCHHH---HHHHHHH--------H-------------------
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHH--------H-------------------
Confidence 578999999999999999999999998 889999987421 1111111 1
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~ 191 (366)
... .++.++.+|+++.+ .+..+++ ++|+||||||.... ...++
T Consensus 74 ----------------~~~-~~~~~~~~Dv~d~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~ 130 (276)
T 2b4q_A 74 ----------------SAY-GDCQAIPADLSSEA------GARRLAQALGELSARLDILVNNAGTSWGAALESYPVSGWE 130 (276)
T ss_dssp ----------------TTS-SCEEECCCCTTSHH------HHHHHHHHHHHHCSCCSEEEECCCCCCCCCTTSCCSHHHH
T ss_pred ----------------Hhc-CceEEEEeeCCCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHH
Confidence 011 26788899999976 6666554 68999999996431 24567
Q ss_pred HHHHHHHHHHHHHHHHHHh----cCC---CcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhc
Q psy17528 192 TAYNINVKGTQTILALAKR----MKG---LKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEH 264 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~----~~~---~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 264 (366)
..+++|+.++..+++++.+ .+. .++||++||..++....
T Consensus 131 ~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~~~~---------------------------------- 176 (276)
T 2b4q_A 131 KVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISAMG---------------------------------- 176 (276)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTCCCC----------------------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcCCCC----------------------------------
Confidence 8999999999877776542 211 27999999987652210
Q ss_pred ccCCCCc-hHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCC
Q psy17528 265 IIGGKPN-SYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDP 338 (366)
Q Consensus 265 ~~~~~~~-~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~ 338 (366)
... .|+.+|...+.+.+.+. .++++++++||.|.++.... +. .. ......... .
T Consensus 177 ----~~~~~Y~asK~a~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~---~~---~~---~~~~~~~~~-------~ 236 (276)
T 2b4q_A 177 ----EQAYAYGPSKAALHQLSRMLAKELVGEHINVNVIAPGRFPSRMTRH---IA---ND---PQALEADSA-------S 236 (276)
T ss_dssp ----CSCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSTTTHH---HH---HC---HHHHHHHHH-------T
T ss_pred ----CCccccHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcCcchhh---cc---hh---HHHHHHhhc-------C
Confidence 014 79999999999887765 58999999999998764210 00 00 001111100 0
Q ss_pred CcccCcccHHHHHHHHHHHHHhhh
Q psy17528 339 NISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 339 ~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
.....+...+|+|++++.++..+.
T Consensus 237 ~p~~r~~~p~dvA~~v~~l~s~~~ 260 (276)
T 2b4q_A 237 IPMGRWGRPEEMAALAISLAGTAG 260 (276)
T ss_dssp STTSSCCCHHHHHHHHHHHHSGGG
T ss_pred CCCCCcCCHHHHHHHHHHHhCccc
Confidence 112357899999999999887653
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.2e-17 Score=155.45 Aligned_cols=225 Identities=14% Similarity=0.093 Sum_probs=148.7
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCc------CHHHHHHHHhhhhhhhhhhhcCCCCCCcc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGST------SITQRVYNYFNDAVFDRMRLECPNYADKV 117 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 117 (366)
..+++|++|||||+|+||.+++++|++.| .+|++++|+.... ...+++.+... .+.
T Consensus 42 ~~l~gk~~lVTGas~GIG~aia~~la~~G---~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---------- 103 (317)
T 3oec_A 42 NRLQGKVAFITGAARGQGRTHAVRLAQDG---ADIVAIDLCRQQPNLDYAQGSPEELKETVR-----LVE---------- 103 (317)
T ss_dssp CTTTTCEEEESSCSSHHHHHHHHHHHHTT---CEEEEEECCCCCTTCCSCCCCHHHHHHHHH-----HHH----------
T ss_pred hccCCCEEEEeCCCcHHHHHHHHHHHHCC---CeEEEEecccccccccccccCHHHHHHHHH-----HHH----------
Confidence 34678999999999999999999999999 8999998863221 01222222111 111
Q ss_pred ccccccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-----
Q psy17528 118 DIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR----- 185 (366)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~----- 185 (366)
....++.++.+|+++.+ .+..+++ ++|++|||||...
T Consensus 104 -------------------------~~~~~~~~~~~Dv~d~~------~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~ 152 (317)
T 3oec_A 104 -------------------------EQGRRIIARQADVRDLA------SLQAVVDEALAEFGHIDILVSNVGISNQGEVV 152 (317)
T ss_dssp -------------------------HTTCCEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTT
T ss_pred -------------------------hcCCeEEEEECCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcc
Confidence 12357889999999976 6666654 6899999999753
Q ss_pred --hhhhHHHHHHHHHHHHHHHHHHHHh----cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHH
Q psy17528 186 --FDEHIRTAYNINVKGTQTILALAKR----MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIA 259 (366)
Q Consensus 186 --~~~~~~~~~~~nv~~~~~ll~~a~~----~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~ 259 (366)
....++..+++|+.++..+++++.+ .+...+||++||..++....
T Consensus 153 ~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~~~~~~~----------------------------- 203 (317)
T 3oec_A 153 SLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLRGAP----------------------------- 203 (317)
T ss_dssp TCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGGGSSCCT-----------------------------
T ss_pred cCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHHhcCCCC-----------------------------
Confidence 2346678899999999998887643 22346899999987652211
Q ss_pred hhhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCC---ccccccc-hHHHHHHHHhcCc
Q psy17528 260 LLNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMP---LWIKGFN-GVMALALGAGTGL 330 (366)
Q Consensus 260 ~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~---~~~~~~~-~~~~~~~~~~~g~ 330 (366)
....|+.+|...+.+.+.+. +|+++++++||.|.++...... .+...+. ...........
T Consensus 204 ---------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 272 (317)
T 3oec_A 204 ---------GQSHYAASKHGVQGLMLSLANEVGRHNIRVNSVNPGAVNTEMALNEKLLKMFLPHLENPTREDAAELFS-- 272 (317)
T ss_dssp ---------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHCHHHHHHHCTTCSSCCHHHHHHHHT--
T ss_pred ---------CCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCccccchhhhhhhhhhccccchhHHHHHHh--
Confidence 01689999999999887766 5899999999999986321000 0000000 00000000000
Q ss_pred ceeecCCCCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 331 IRVVQTDPNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 331 ~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
. .......|++.+|+|+++++++...+
T Consensus 273 ----~-~~~~p~~~~~pedvA~av~fL~s~~a 299 (317)
T 3oec_A 273 ----Q-LTLLPIPWVEPEDVSNAVAWLASDEA 299 (317)
T ss_dssp ----T-TCSSSSSSBCHHHHHHHHHHHTSGGG
T ss_pred ----h-hccCCCCCCCHHHHHHHHHHHcCCcc
Confidence 0 01111578999999999999886543
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-17 Score=157.70 Aligned_cols=211 Identities=15% Similarity=0.084 Sum_probs=148.2
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++|++|||||+|+||.+++++|++.| .+|++.+|+.... ..+.+.+...
T Consensus 46 ~l~~k~vlVTGas~GIG~aia~~la~~G---~~V~~~~~~~~~~-~~~~~~~~~~------------------------- 96 (294)
T 3r3s_A 46 RLKDRKALVTGGDSGIGRAAAIAYAREG---ADVAINYLPAEEE-DAQQVKALIE------------------------- 96 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEECCGGGHH-HHHHHHHHHH-------------------------
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCcchh-HHHHHHHHHH-------------------------
Confidence 4578999999999999999999999999 8898888863211 1122222111
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC--------hhhh
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR--------FDEH 189 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~--------~~~~ 189 (366)
....++.++.+|+++.+ .+..+++ ++|++|||||... ....
T Consensus 97 ------------------~~~~~~~~~~~Dv~d~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~ 152 (294)
T 3r3s_A 97 ------------------ECGRKAVLLPGDLSDES------FARSLVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQ 152 (294)
T ss_dssp ------------------HTTCCEEECCCCTTSHH------HHHHHHHHHHHHHTCCCEEEECCCCCCCCSSGGGCCHHH
T ss_pred ------------------HcCCcEEEEEecCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCcCCCCCcccCCHHH
Confidence 11357889999999976 5655553 7899999999742 2345
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 190 IRTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 190 ~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
++..+++|+.++..+++.+.+. ....+||++||..++....
T Consensus 153 ~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~-------------------------------------- 194 (294)
T 3r3s_A 153 FQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAYQPSP-------------------------------------- 194 (294)
T ss_dssp HHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGTSCCT--------------------------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhccCCC--------------------------------------
Confidence 6789999999999999988764 2234899999987653211
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
....|+.+|...+.+.+.+. +|+++++++||.|+++....... . ......+........
T Consensus 195 ~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~-~---------------~~~~~~~~~~~p~~r 258 (294)
T 3r3s_A 195 HLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQ-T---------------QDKIPQFGQQTPMKR 258 (294)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHTTTS-C---------------GGGSTTTTTTSTTSS
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCccccccccCC-C---------------HHHHHHHHhcCCCCC
Confidence 11679999999999887765 58999999999999864110000 0 000001112233456
Q ss_pred cccHHHHHHHHHHHHHhhh
Q psy17528 344 VVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~~~ 362 (366)
+...+|+|++++.++....
T Consensus 259 ~~~p~dvA~~v~~L~s~~~ 277 (294)
T 3r3s_A 259 AGQPAELAPVYVYLASQES 277 (294)
T ss_dssp CBCGGGGHHHHHHHHSGGG
T ss_pred CcCHHHHHHHHHHHhCccc
Confidence 7889999999999886543
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.3e-17 Score=154.99 Aligned_cols=211 Identities=14% Similarity=0.101 Sum_probs=144.2
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++|++|||||+|+||.+++++|++.| .+|++++|+... .+.+.+.
T Consensus 26 ~l~gk~vlVTGas~gIG~aia~~la~~G---~~V~~~~r~~~~---~~~~~~~--------------------------- 72 (277)
T 3gvc_A 26 DLAGKVAIVTGAGAGIGLAVARRLADEG---CHVLCADIDGDA---ADAAATK--------------------------- 72 (277)
T ss_dssp -CTTCEEEETTTTSTHHHHHHHHHHHTT---CEEEEEESSHHH---HHHHHHH---------------------------
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHH---------------------------
Confidence 4678999999999999999999999999 899999997421 1111110
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHI 190 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~ 190 (366)
...++.++.+|+++.+ .+..+++ ++|++|||||... ....+
T Consensus 73 -------------------~~~~~~~~~~Dv~d~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~ 127 (277)
T 3gvc_A 73 -------------------IGCGAAACRVDVSDEQ------QIIAMVDACVAAFGGVDKLVANAGVVHLASLIDTTVEDF 127 (277)
T ss_dssp -------------------HCSSCEEEECCTTCHH------HHHHHHHHHHHHHSSCCEEEECCCCCCCBCTTTCCHHHH
T ss_pred -------------------cCCcceEEEecCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHH
Confidence 1246788999999976 6665554 6899999999753 23456
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 191 RTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
+..+++|+.++..+.+++.+. .+..+||++||..++....
T Consensus 128 ~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~~------------------------------------- 170 (277)
T 3gvc_A 128 DRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQVAVG------------------------------------- 170 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCCT-------------------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCCC-------------------------------------
Confidence 789999999999888876531 2556899999986542211
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
....|+.+|...+.+.+... +|+++++++||.|+++........ .. . ........... .....
T Consensus 171 -~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~---~~--~----~~~~~~~~~~~--~~~~~ 238 (277)
T 3gvc_A 171 -GTGAYGMSKAGIIQLSRITAAELRSSGIRSNTLLPAFVDTPMQQTAMAM---FD--G----ALGAGGARSMI--ARLQG 238 (277)
T ss_dssp -TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHTC---C------------CCHHHHH--HHHHS
T ss_pred -CchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCccCchHHHhhhc---ch--h----hHHHHhhhhhh--hcccc
Confidence 11689999999999887655 689999999999998632100000 00 0 00000000000 01123
Q ss_pred CcccHHHHHHHHHHHHHhhh
Q psy17528 343 DVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~~ 362 (366)
.+...+|+|++++.++....
T Consensus 239 r~~~pedvA~~v~~L~s~~a 258 (277)
T 3gvc_A 239 RMAAPEEMAGIVVFLLSDDA 258 (277)
T ss_dssp SCBCHHHHHHHHHHHHSGGG
T ss_pred CCCCHHHHHHHHHHHcCCcc
Confidence 57889999999999886553
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.75 E-value=4e-17 Score=154.22 Aligned_cols=208 Identities=14% Similarity=0.075 Sum_probs=147.6
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++|++|||||+|+||.+++++|++.| .+|++++|+.... +.+.+.+. .
T Consensus 29 ~l~gk~~lVTGas~GIG~aia~~la~~G---~~V~~~~r~~~~~---~~~~~~~~--------~---------------- 78 (276)
T 3r1i_A 29 DLSGKRALITGASTGIGKKVALAYAEAG---AQVAVAARHSDAL---QVVADEIA--------G---------------- 78 (276)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESSGGGG---HHHHHHHH--------H----------------
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCCHHHH---HHHHHHHH--------h----------------
Confidence 3578999999999999999999999999 8999999975432 22222111 1
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHI 190 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~ 190 (366)
...++.++.+|+++.+ ++.++++ ++|++|||||.... ...+
T Consensus 79 -------------------~~~~~~~~~~Dl~d~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~ 133 (276)
T 3r1i_A 79 -------------------VGGKALPIRCDVTQPD------QVRGMLDQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEF 133 (276)
T ss_dssp -------------------TTCCCEEEECCTTCHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHH
T ss_pred -------------------cCCeEEEEEcCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHH
Confidence 1247788999999987 6666665 78999999997532 3456
Q ss_pred HHHHHHHHHHHHHHHHHHHh----cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 191 RTAYNINVKGTQTILALAKR----MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~----~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
+..+++|+.++..+++++.+ .+...++|++||..++.... +.+
T Consensus 134 ~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~~~~~-------~~~-------------------------- 180 (276)
T 3r1i_A 134 QRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHIINI-------PQQ-------------------------- 180 (276)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCC-------SSC--------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhcccCC-------CCC--------------------------
Confidence 77889999999988887653 22236899999986542210 001
Q ss_pred CCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcc
Q psy17528 267 GGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNIS 341 (366)
Q Consensus 267 ~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~ 341 (366)
...|+.+|...+.+.+.+. +++++++++||.|.++.....+. ........ ...
T Consensus 181 ---~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~----------~~~~~~~~---------~p~ 238 (276)
T 3r1i_A 181 ---VSHYCTSKAAVVHLTKAMAVELAPHQIRVNSVSPGYIRTELVEPLAD----------YHALWEPK---------IPL 238 (276)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTTGGGGG----------GHHHHGGG---------STT
T ss_pred ---cchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCccccchH----------HHHHHHhc---------CCC
Confidence 1679999999999887765 68999999999999875432111 11111111 122
Q ss_pred cCcccHHHHHHHHHHHHHhhh
Q psy17528 342 MDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 342 ~~~v~vdDva~ai~~~~~~~~ 362 (366)
..+...+|+|++++.++...+
T Consensus 239 ~r~~~pedvA~~v~fL~s~~~ 259 (276)
T 3r1i_A 239 GRMGRPEELTGLYLYLASAAS 259 (276)
T ss_dssp SSCBCGGGSHHHHHHHHSGGG
T ss_pred CCCcCHHHHHHHHHHHcCccc
Confidence 347789999999999887544
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=99.75 E-value=5.5e-17 Score=151.35 Aligned_cols=208 Identities=13% Similarity=0.144 Sum_probs=146.8
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++|+++||||+|+||.+++++|++.| .+|++++|+... .+++.+.+
T Consensus 5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G---~~V~~~~r~~~~---~~~~~~~~-------------------------- 52 (255)
T 4eso_A 5 NYQGKKAIVIGGTHGMGLATVRRLVEGG---AEVLLTGRNESN---IARIREEF-------------------------- 52 (255)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHHH--------------------------
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHHh--------------------------
Confidence 3678999999999999999999999999 899999997421 11111110
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHI 190 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~ 190 (366)
..++.++.+|+++.+ .+..+++ ++|++|||||... ....+
T Consensus 53 --------------------~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~ 106 (255)
T 4eso_A 53 --------------------GPRVHALRSDIADLN------EIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASY 106 (255)
T ss_dssp --------------------GGGEEEEECCTTCHH------HHHHHHHHHHHHHSSEEEEEECCCCCCCBCGGGCCHHHH
T ss_pred --------------------CCcceEEEccCCCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHH
Confidence 246789999999976 5655543 6899999999753 23456
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCC
Q psy17528 191 RTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGK 269 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (366)
+..+++|+.++..+.+.+.+. ....++|++||...+.... .
T Consensus 107 ~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------------------------------------~ 148 (255)
T 4eso_A 107 DRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEGGHP--------------------------------------G 148 (255)
T ss_dssp HHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGSSBCT--------------------------------------T
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhcCCCC--------------------------------------C
Confidence 788999999999999988753 1235899999987653211 1
Q ss_pred CchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCc
Q psy17528 270 PNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDV 344 (366)
Q Consensus 270 ~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~ 344 (366)
...|+.+|...+.+.+... +|++++.++||.|.++...... +.. .....+...... ......+
T Consensus 149 ~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~-~~~--~~~~~~~~~~~~---------~~p~~r~ 216 (255)
T 4eso_A 149 MSVYSASKAALVSFASVLAAELLPRGIRVNSVSPGFIDTPTKGVAG-ITE--AERAEFKTLGDN---------ITPMKRN 216 (255)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEEECSBCCSSTTCTT-SCH--HHHHHHHHHHHH---------HSTTSSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEecCcccCccccccc-CCh--hhHHHHHHHHhc---------cCCCCCC
Confidence 1689999999999887765 5899999999999987543211 100 000111111111 1123457
Q ss_pred ccHHHHHHHHHHHHHh
Q psy17528 345 VPGDRVINAMAALAWY 360 (366)
Q Consensus 345 v~vdDva~ai~~~~~~ 360 (366)
...+|+|++++.++..
T Consensus 217 ~~pedvA~~v~~L~s~ 232 (255)
T 4eso_A 217 GTADEVARAVLFLAFE 232 (255)
T ss_dssp BCHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHcCc
Confidence 7899999999998864
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-17 Score=151.32 Aligned_cols=187 Identities=14% Similarity=0.102 Sum_probs=136.2
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
|++++|+||||+|+||.+++++|++.| ++|++++|+....
T Consensus 1 m~~k~vlITGas~gIG~~~a~~l~~~G---~~V~~~~r~~~~~------------------------------------- 40 (236)
T 1ooe_A 1 MSSGKVIVYGGKGALGSAILEFFKKNG---YTVLNIDLSANDQ------------------------------------- 40 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHTT---EEEEEEESSCCTT-------------------------------------
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEecCcccc-------------------------------------
Confidence 457899999999999999999999999 8999999985421
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh---------CcCEEEEcCcccC--------hhh
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS---------QTTIIFHIAATVR--------FDE 188 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~---------~~d~Vih~a~~~~--------~~~ 188 (366)
.....++.+|+++.+ .+..+++ ++|+||||||... ...
T Consensus 41 -------------------~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~ 95 (236)
T 1ooe_A 41 -------------------ADSNILVDGNKNWTE------QEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVK 95 (236)
T ss_dssp -------------------SSEEEECCTTSCHHH------HHHHHHHHHHHHHTTCCEEEEEECCCCCCCBCTTSTTHHH
T ss_pred -------------------ccccEEEeCCCCCHH------HHHHHHHHHHHHhCCCCCCEEEECCcccCCCCCcccCCHH
Confidence 123467789999876 5555543 7899999999642 124
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 189 HIRTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 189 ~~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
.++..+++|+.++..+.+.+.+. ....++|++||..++....
T Consensus 96 ~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~------------------------------------- 138 (236)
T 1ooe_A 96 NADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGPTP------------------------------------- 138 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCT-------------------------------------
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhccCCC-------------------------------------
Confidence 56778999999999999987653 1225899999986652210
Q ss_pred CCCchHHHHHHHHHHHHHHhc-------CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-------HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNI 340 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-------~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~ 340 (366)
....|+.+|...+.+.+.+. .++++++++||.|.++.. ...... ..
T Consensus 139 -~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~-----------------~~~~~~---------~~ 191 (236)
T 1ooe_A 139 -SMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPMN-----------------RKWMPN---------AD 191 (236)
T ss_dssp -TBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHHH-----------------HHHSTT---------CC
T ss_pred -CcHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCcccCcch-----------------hhcCCC---------cc
Confidence 01679999999999998765 248899999999987521 111000 11
Q ss_pred ccCcccHHHHHHHHHHHHHhh
Q psy17528 341 SMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 341 ~~~~v~vdDva~ai~~~~~~~ 361 (366)
...+++.+|+|++++.++.++
T Consensus 192 ~~~~~~~~dvA~~i~~~l~s~ 212 (236)
T 1ooe_A 192 HSSWTPLSFISEHLLKWTTET 212 (236)
T ss_dssp GGGCBCHHHHHHHHHHHHHCG
T ss_pred ccccCCHHHHHHHHHHHHcCC
Confidence 234678899999999666443
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=4.7e-17 Score=153.40 Aligned_cols=216 Identities=12% Similarity=0.129 Sum_probs=144.9
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||.+++++|++.| ++|++++|+... .+.+.+. +..
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~---~~~~~~~--------~~~----------------- 52 (280)
T 1xkq_A 4 FSNKTVIITGSSNGIGRTTAILFAQEG---ANVTITGRSSER---LEETRQI--------ILK----------------- 52 (280)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHH--------HHT-----------------
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHH--------HHH-----------------
Confidence 568999999999999999999999999 899999997421 1111111 110
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-----------h
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-----------D 187 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-----------~ 187 (366)
......++.++.+|+++.+ .+..+++ ++|+||||||.... .
T Consensus 53 ---------------~~~~~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~ 111 (280)
T 1xkq_A 53 ---------------SGVSEKQVNSVVADVTTED------GQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGI 111 (280)
T ss_dssp ---------------TTCCGGGEEEEECCTTSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCCGGGSCH
T ss_pred ---------------cCCCCcceEEEEecCCCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCCCCcccccCCH
Confidence 0000126889999999976 6666554 68999999996421 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhc
Q psy17528 188 EHIRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEH 264 (366)
Q Consensus 188 ~~~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 264 (366)
..++..+++|+.++..+++.+.+. .+ .++|++||..++.... ++
T Consensus 112 ~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~~--------~~------------------------ 158 (280)
T 1xkq_A 112 DIYHKTLKLNLQAVIEMTKKVKPHLVASK-GEIVNVSSIVAGPQAQ--------PD------------------------ 158 (280)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGSSSCC--------CS------------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhcCC-CcEEEecCccccCCCC--------Cc------------------------
Confidence 346778999999999988876542 13 6999999986652210 01
Q ss_pred ccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccc-hHHHHHHHHhcCcceeecCCC
Q psy17528 265 IIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFN-GVMALALGAGTGLIRVVQTDP 338 (366)
Q Consensus 265 ~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~l~~~~ 338 (366)
...|+.+|...+.+.+... +++++++++||.|+++........ .... ....+...... .
T Consensus 159 -----~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~-~~~~~~~~~~~~~~~~---------~ 223 (280)
T 1xkq_A 159 -----FLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMP-DQASQKFYNFMASHKE---------C 223 (280)
T ss_dssp -----SHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCC-HHHHHHHHHHHHHCTT---------T
T ss_pred -----ccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeCcCcCCcccccccc-cccccchHHHHHHHHc---------C
Confidence 1679999999999887765 689999999999998743210000 0000 00011111111 1
Q ss_pred CcccCcccHHHHHHHHHHHHHhh
Q psy17528 339 NISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 339 ~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
.....+.+.+|+|++++.++..+
T Consensus 224 ~p~~~~~~pedvA~~v~~l~s~~ 246 (280)
T 1xkq_A 224 IPIGAAGKPEHIANIILFLADRN 246 (280)
T ss_dssp CTTSSCBCHHHHHHHHHHHHCHH
T ss_pred CCCCCCCCHHHHHHHHHHhcCcc
Confidence 12345889999999999988654
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-17 Score=160.11 Aligned_cols=219 Identities=15% Similarity=0.072 Sum_probs=138.3
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++||||||+|+||.+++++|++.| ++|++++|+... .+++.+.+. ..
T Consensus 6 l~~k~vlVTGas~gIG~~la~~l~~~G---~~Vv~~~r~~~~---~~~~~~~l~--------~~---------------- 55 (319)
T 3ioy_A 6 FAGRTAFVTGGANGVGIGLVRQLLNQG---CKVAIADIRQDS---IDKALATLE--------AE---------------- 55 (319)
T ss_dssp CTTCEEEEETTTSTHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHHHH--------HH----------------
T ss_pred CCCCEEEEcCCchHHHHHHHHHHHHCC---CEEEEEECCHHH---HHHHHHHHH--------hc----------------
Confidence 568899999999999999999999999 889999997532 122222111 10
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
. ...++.++.+|+++.+ .+..+++ ++|+||||||... ....++
T Consensus 56 ---------------~--~~~~~~~~~~Dl~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~ 112 (319)
T 3ioy_A 56 ---------------G--SGPEVMGVQLDVASRE------GFKMAADEVEARFGPVSILCNNAGVNLFQPIEESSYDDWD 112 (319)
T ss_dssp ---------------T--CGGGEEEEECCTTCHH------HHHHHHHHHHHHTCCEEEEEECCCCCCCCCGGGCCHHHHH
T ss_pred ---------------C--CCCeEEEEECCCCCHH------HHHHHHHHHHHhCCCCCEEEECCCcCCCCCcccCCHHHHH
Confidence 0 1137889999999976 6666664 5799999999642 224567
Q ss_pred HHHHHHHHHHHHHHHHHHhc---------CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhh
Q psy17528 192 TAYNINVKGTQTILALAKRM---------KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLN 262 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~---------~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 262 (366)
..+++|+.|+..+++.+... .+..+||++||..++....
T Consensus 113 ~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~~~~~-------------------------------- 160 (319)
T 3ioy_A 113 WLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAG-------------------------------- 160 (319)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGTCCCS--------------------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecccccccCCC--------------------------------
Confidence 89999999999988876542 1245899999987653211
Q ss_pred hcccCCCCchHHHHHHHHHHHH----HHhc-CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCccee-ecC
Q psy17528 263 EHIIGGKPNSYTLTKATAEDLV----RQVG-HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRV-VQT 336 (366)
Q Consensus 263 ~~~~~~~~~~Y~~sK~~~E~~l----~~~~-~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-l~~ 336 (366)
....|+.+|...+.+. .++. .|+.+++++||.|.++......... ..+.......... +..
T Consensus 161 ------~~~~Y~aSKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 227 (319)
T 3ioy_A 161 ------SPGIYNTTKFAVRGLSESLHYSLLKYEIGVSVLCPGLVKSYIYASDDIRP-------DALKGEVKPVDKTAVER 227 (319)
T ss_dssp ------SSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCBC-----------------------------------
T ss_pred ------CCHHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEcCeEccCcccccccCc-------hhhcccccchhHHHHHH
Confidence 1267999999555544 4444 6899999999999887543211000 0000000000000 000
Q ss_pred CCCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 337 DPNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 337 ~~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
........+..+|+|++++.+++.+.
T Consensus 228 ~~~~~~~~~~pe~vA~~~~~al~~~~ 253 (319)
T 3ioy_A 228 LAGVHEFGMEPDVIGARVIEAMKANR 253 (319)
T ss_dssp -CCGGGSSBCHHHHHHHHHHHHHTTC
T ss_pred HHHhhhcCCCHHHHHHHHHHHHHcCC
Confidence 01111123899999999999987754
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-17 Score=157.30 Aligned_cols=209 Identities=12% Similarity=0.113 Sum_probs=146.3
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++|++|||||+|+||.+++++|++.| .+|++++|+... .+++.+. +..
T Consensus 23 ~l~gk~~lVTGas~gIG~aia~~la~~G---~~V~~~~r~~~~---~~~~~~~--------l~~---------------- 72 (271)
T 4ibo_A 23 DLGGRTALVTGSSRGLGRAMAEGLAVAG---ARILINGTDPSR---VAQTVQE--------FRN---------------- 72 (271)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEECCSCHHH---HHHHHHH--------HHH----------------
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHH--------HHh----------------
Confidence 4678999999999999999999999999 889999886421 1111111 111
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHI 190 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~ 190 (366)
...++.++.+|+++.+ .+.++++ ++|++|||||... ....+
T Consensus 73 -------------------~~~~~~~~~~Dv~d~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~ 127 (271)
T 4ibo_A 73 -------------------VGHDAEAVAFDVTSES------EIIEAFARLDEQGIDVDILVNNAGIQFRKPMIELETADW 127 (271)
T ss_dssp -------------------TTCCEEECCCCTTCHH------HHHHHHHHHHHHTCCCCEEEECCCCCCCCCGGGCCHHHH
T ss_pred -------------------cCCceEEEEcCCCCHH------HHHHHHHHHHHHCCCCCEEEECCCCCCCCCchhCCHHHH
Confidence 1357889999999976 6666664 6899999999752 23456
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 191 RTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
+..+++|+.++..+.+.+.+. .+..+||++||........
T Consensus 128 ~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iV~isS~~~~~~~~------------------------------------- 170 (271)
T 4ibo_A 128 QRVIDTNLTSAFMIGREAAKRMIPRGYGKIVNIGSLTSELARA------------------------------------- 170 (271)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSBCT-------------------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCCCCC-------------------------------------
Confidence 788999999999987765432 2456999999976542211
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
....|+.+|...+.+.+.+. +|+++++++||.|.++.... ......+....... ....
T Consensus 171 -~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~-------~~~~~~~~~~~~~~---------~p~~ 233 (271)
T 4ibo_A 171 -TVAPYTVAKGGIKMLTRAMAAEWAQYGIQANAIGPGYMLTDMNQA-------LIDNPEFDAWVKAR---------TPAK 233 (271)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHH-------HHHCHHHHHHHHHH---------STTC
T ss_pred -CchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeccEeCcchhh-------cccCHHHHHHHHhc---------CCCC
Confidence 12689999999999887765 68999999999998864311 00001111111111 1234
Q ss_pred CcccHHHHHHHHHHHHHhhh
Q psy17528 343 DVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~~ 362 (366)
.+...+|+|++++.++....
T Consensus 234 r~~~pedva~~v~~L~s~~~ 253 (271)
T 4ibo_A 234 RWGKPQELVGTAVFLSASAS 253 (271)
T ss_dssp SCBCGGGGHHHHHHHHSGGG
T ss_pred CCcCHHHHHHHHHHHhCccc
Confidence 57789999999999886543
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-16 Score=147.15 Aligned_cols=207 Identities=12% Similarity=0.090 Sum_probs=143.4
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++++++||||+|+||.+++++|++.| ++|++++|+... .+.+.+. +..
T Consensus 4 ~l~~k~~lVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~---~~~~~~~--------l~~---------------- 53 (247)
T 2jah_A 4 ALQGKVALITGASSGIGEATARALAAEG---AAVAIAARRVEK---LRALGDE--------LTA---------------- 53 (247)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHH--------HHH----------------
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEECCHHH---HHHHHHH--------HHh----------------
Confidence 3678999999999999999999999999 899999997421 1111111 111
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHI 190 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~ 190 (366)
...++.++.+|+++.+ .+..+++ ++|++|||||... ....+
T Consensus 54 -------------------~~~~~~~~~~Dv~~~~------~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~ 108 (247)
T 2jah_A 54 -------------------AGAKVHVLELDVADRQ------GVDAAVASTVEALGGLDILVNNAGIMLLGPVEDADTTDW 108 (247)
T ss_dssp -------------------TTCCEEEEECCTTCHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCCCSTTCCHHHH
T ss_pred -------------------cCCcEEEEECCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHH
Confidence 1246889999999976 6665554 7899999999642 22456
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 191 RTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
+..+++|+.++..+.+.+.+. .+ .+||++||..++....
T Consensus 109 ~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~~------------------------------------- 150 (247)
T 2jah_A 109 TRMIDTNLLGLMYMTRAALPHLLRSK-GTVVQMSSIAGRVNVR------------------------------------- 150 (247)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGTCCCT-------------------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHCC-CEEEEEccHHhcCCCC-------------------------------------
Confidence 778999999999988876532 13 6999999986542210
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
....|+.+|...+.+.+... +|+++++++||.|.++..... . . .. ....... .+ + ..
T Consensus 151 -~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~---~---~--~~-~~~~~~~----~~--~--~~ 212 (247)
T 2jah_A 151 -NAAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTELRGHI---T---H--TA-TKEMYEQ----RI--S--QI 212 (247)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGC---C---C--HH-HHHHHHH----HT--T--TS
T ss_pred -CCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCCCCCcchhcc---c---c--hh-hHHHHHh----cc--c--cc
Confidence 11679999998888876654 689999999999987643211 0 0 00 0111110 01 1 11
Q ss_pred CcccHHHHHHHHHHHHHhhh
Q psy17528 343 DVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~~ 362 (366)
.++..+|+|++++.++..+.
T Consensus 213 ~~~~pedvA~~v~~l~s~~~ 232 (247)
T 2jah_A 213 RKLQAQDIAEAVRYAVTAPH 232 (247)
T ss_dssp CCBCHHHHHHHHHHHHHSCT
T ss_pred CCCCHHHHHHHHHHHhCCCc
Confidence 25899999999999987653
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-16 Score=150.05 Aligned_cols=207 Identities=12% Similarity=0.064 Sum_probs=146.3
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|+++||||+|+||.+++++|++.| .+|++++|+... ..+.+.+.+ ..
T Consensus 29 l~gk~~lVTGas~GIG~aia~~la~~G---~~V~~~~~~~~~--~~~~~~~~l--------~~----------------- 78 (271)
T 3v2g_A 29 LAGKTAFVTGGSRGIGAAIAKRLALEG---AAVALTYVNAAE--RAQAVVSEI--------EQ----------------- 78 (271)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSCHH--HHHHHHHHH--------HH-----------------
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCCHH--HHHHHHHHH--------Hh-----------------
Confidence 678999999999999999999999999 888888776421 112222211 11
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
...++.++.+|+++.+ .+..+++ ++|++|||||... ....++
T Consensus 79 ------------------~~~~~~~~~~Dv~d~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~ 134 (271)
T 3v2g_A 79 ------------------AGGRAVAIRADNRDAE------AIEQAIRETVEALGGLDILVNSAGIWHSAPLEETTVADFD 134 (271)
T ss_dssp ------------------TTCCEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHH
T ss_pred ------------------cCCcEEEEECCCCCHH------HHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHH
Confidence 1357889999999976 6666664 7899999999743 234567
Q ss_pred HHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCC
Q psy17528 192 TAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKP 270 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (366)
..+++|+.++..+++.+.+. ....++|++||....... . +..
T Consensus 135 ~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~~~~~---------~----------------------------~~~ 177 (271)
T 3v2g_A 135 EVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAELVP---------W----------------------------PGI 177 (271)
T ss_dssp HHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGGTCCC---------S----------------------------TTC
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhhccCC---------C----------------------------CCc
Confidence 88999999999999987653 345689999996432110 0 012
Q ss_pred chHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcc
Q psy17528 271 NSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVV 345 (366)
Q Consensus 271 ~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v 345 (366)
..|+.+|...+.+.+.+. +++++++++||.|.++.....+.. ....... .....+.
T Consensus 178 ~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~----------~~~~~~~---------~~~~r~~ 238 (271)
T 3v2g_A 178 SLYSASKAALAGLTKGLARDLGPRGITVNIVHPGSTDTDMNPADGDH----------AEAQRER---------IATGSYG 238 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSSSSCSSCSS----------HHHHHHT---------CTTSSCB
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCCCcCCcccccchh----------HHHHHhc---------CCCCCCC
Confidence 689999999999887665 689999999999998765322111 0111111 1123467
Q ss_pred cHHHHHHHHHHHHHhhh
Q psy17528 346 PGDRVINAMAALAWYFL 362 (366)
Q Consensus 346 ~vdDva~ai~~~~~~~~ 362 (366)
..+|+|++++.++....
T Consensus 239 ~pedvA~~v~fL~s~~~ 255 (271)
T 3v2g_A 239 EPQDIAGLVAWLAGPQG 255 (271)
T ss_dssp CHHHHHHHHHHHHSGGG
T ss_pred CHHHHHHHHHHHhCccc
Confidence 89999999999886543
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-17 Score=152.71 Aligned_cols=220 Identities=10% Similarity=-0.034 Sum_probs=136.0
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
||+|+||||+|+||.+++++|++.| ++|++++|+.....
T Consensus 1 mk~vlVTGas~gIG~~~a~~l~~~G---~~V~~~~r~~~~~~-------------------------------------- 39 (257)
T 1fjh_A 1 MSIIVISGCATGIGAATRKVLEAAG---HQIVGIDIRDAEVI-------------------------------------- 39 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSSSSEE--------------------------------------
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCCchhhc--------------------------------------
Confidence 4689999999999999999999998 88999999754210
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh----CcCEEEEcCcccChhhhHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS----QTTIIFHIAATVRFDEHIRTAYNINVKGTQT 203 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~----~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ 203 (366)
. .+.+|+++.+ .+..+++ ++|+||||||.......++..+++|+.++..
T Consensus 40 ------------------~---~~~~Dl~~~~------~v~~~~~~~~~~id~lv~~Ag~~~~~~~~~~~~~~N~~g~~~ 92 (257)
T 1fjh_A 40 ------------------A---DLSTAEGRKQ------AIADVLAKCSKGMDGLVLCAGLGPQTKVLGNVVSVNYFGATE 92 (257)
T ss_dssp ------------------C---CTTSHHHHHH------HHHHHHTTCTTCCSEEEECCCCCTTCSSHHHHHHHHTHHHHH
T ss_pred ------------------c---ccccCCCCHH------HHHHHHHHhCCCCCEEEECCCCCCCcccHHHHHHHhhHHHHH
Confidence 0 1567888766 6777775 4599999999765345578899999999999
Q ss_pred HHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhc-ccCCCCchHHHHHHH
Q psy17528 204 ILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEH-IIGGKPNSYTLTKAT 279 (366)
Q Consensus 204 ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Y~~sK~~ 279 (366)
+++++.+. .+..++|++||..++...... +.... . +...+.+........ ........|+.+|..
T Consensus 93 l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~-------~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a 161 (257)
T 1fjh_A 93 LMDAFLPALKKGHQPAAVVISSVASAHLAFDK-------NPLAL-A---LEAGEEAKARAIVEHAGEQGGNLAYAGSKNA 161 (257)
T ss_dssp HHHHHHHHHHTSSSCEEEEECCGGGGSSCGGG-------CTTHH-H---HHHTCHHHHHHHHHTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCcEEEEECChhhhcccccc-------chhhh-h---hcccchhhhhhhhhcccCCCCccHHHHHHHH
Confidence 98877531 255799999998776321100 00000 0 000011111000000 000112689999999
Q ss_pred HHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHH
Q psy17528 280 AEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAM 354 (366)
Q Consensus 280 ~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai 354 (366)
.+.+.+... +++++++++||.|.++..... . . .......... + ......+++.+|+|+++
T Consensus 162 ~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~---~---~--~~~~~~~~~~----~---~~~~~~~~~~~dvA~~~ 226 (257)
T 1fjh_A 162 LTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAG---L---Q--DPRYGESIAK----F---VPPMGRRAEPSEMASVI 226 (257)
T ss_dssp HHHHHHHTHHHHHHTTCEEEEEEECC---------------------------------C---CCSTTSCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCeEEEEEeeCCCCCccchhh---c---c--chhHHHHHHh----c---ccccCCCCCHHHHHHHH
Confidence 999987765 689999999999988753211 0 0 0000000000 0 11123578999999999
Q ss_pred HHHHHhh
Q psy17528 355 AALAWYF 361 (366)
Q Consensus 355 ~~~~~~~ 361 (366)
+.++..+
T Consensus 227 ~~l~~~~ 233 (257)
T 1fjh_A 227 AFLMSPA 233 (257)
T ss_dssp HHHTSGG
T ss_pred HHHhCch
Confidence 9998765
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=8.1e-17 Score=152.05 Aligned_cols=220 Identities=14% Similarity=0.087 Sum_probs=147.1
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.++++++|||||+|+||.+++++|++.| ++|++++|+... ..+.+.+.+ ..
T Consensus 26 ~~~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~--~~~~~~~~~--------~~---------------- 76 (283)
T 1g0o_A 26 SLEGKVALVTGAGRGIGREMAMELGRRG---CKVIVNYANSTE--SAEEVVAAI--------KK---------------- 76 (283)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESSCHH--HHHHHHHHH--------HH----------------
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCchH--HHHHHHHHH--------HH----------------
Confidence 3678999999999999999999999999 889999997531 111111111 11
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHI 190 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~ 190 (366)
...++.++.+|+++.+ .+..+++ ++|+||||||.... ...+
T Consensus 77 -------------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~ 131 (283)
T 1g0o_A 77 -------------------NGSDAACVKANVGVVE------DIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEF 131 (283)
T ss_dssp -------------------TTCCEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHH
T ss_pred -------------------hCCCeEEEEcCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHH
Confidence 1246888999999876 5555543 68999999997532 3456
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCC
Q psy17528 191 RTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGK 269 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (366)
+..+++|+.++..+++++.+. .+..+||++||..++.... .+
T Consensus 132 ~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~--------~~----------------------------- 174 (283)
T 1g0o_A 132 DRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAKAV--------PK----------------------------- 174 (283)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCSSC--------SS-----------------------------
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechhhccCCC--------CC-----------------------------
Confidence 788999999999999987763 3457999999986542210 00
Q ss_pred CchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCC-Cccccccch-HHHHHHHHhcCcceeecCCCCccc
Q psy17528 270 PNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPM-PLWIKGFNG-VMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 270 ~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~-~~~~~~~~~-~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
...|+.+|...+.+.+.+. +++++++++||.|.++..... ..+...... ............ .....
T Consensus 175 ~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~p~~ 247 (283)
T 1g0o_A 175 HAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQ-------WSPLR 247 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHH-------SCTTC
T ss_pred CcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccchhhhhhhhhccccccccCHHHHHHHHhhc-------CCCCC
Confidence 1679999999999887655 689999999999988632100 000000000 011111111100 01123
Q ss_pred CcccHHHHHHHHHHHHHhhh
Q psy17528 343 DVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~~ 362 (366)
.+.+.+|+|++++.++....
T Consensus 248 r~~~p~dvA~~v~~l~s~~~ 267 (283)
T 1g0o_A 248 RVGLPIDIARVVCFLASNDG 267 (283)
T ss_dssp SCBCHHHHHHHHHHHHSGGG
T ss_pred CCcCHHHHHHHHHHHhCccc
Confidence 47899999999999987553
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-16 Score=148.95 Aligned_cols=203 Identities=9% Similarity=0.048 Sum_probs=136.3
Q ss_pred CcccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccc
Q psy17528 40 SPIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDI 119 (366)
Q Consensus 40 ~~~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (366)
.+....+++++|+||||+|+||.+++++|++.| ++|++++|+.. .+.+
T Consensus 11 ~~~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G---~~V~~~~r~~~------~~~~----------------------- 58 (249)
T 1o5i_A 11 HHMELGIRDKGVLVLAASRGIGRAVADVLSQEG---AEVTICARNEE------LLKR----------------------- 58 (249)
T ss_dssp -----CCTTCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHH-----------------------
T ss_pred hhHHhccCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEcCCHH------HHHh-----------------------
Confidence 344556678999999999999999999999998 88999999741 1110
Q ss_pred ccccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh-------hhhHHH
Q psy17528 120 GITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF-------DEHIRT 192 (366)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~-------~~~~~~ 192 (366)
. ..+.++ +|+ ..+ ...+.+.+.++|+||||||.... ...++.
T Consensus 59 ---------------------~----~~~~~~-~D~-~~~----~~~~~~~~~~iD~lv~~Ag~~~~~~~~~~~~~~~~~ 107 (249)
T 1o5i_A 59 ---------------------S----GHRYVV-CDL-RKD----LDLLFEKVKEVDILVLNAGGPKAGFFDELTNEDFKE 107 (249)
T ss_dssp ---------------------T----CSEEEE-CCT-TTC----HHHHHHHSCCCSEEEECCCCCCCBCGGGCCHHHHHH
T ss_pred ---------------------h----CCeEEE-eeH-HHH----HHHHHHHhcCCCEEEECCCCCCCCChhhCCHHHHHH
Confidence 1 245666 898 222 12233333379999999996432 345677
Q ss_pred HHHHHHHHHHHHHHHH----HhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 193 AYNINVKGTQTILALA----KRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 193 ~~~~nv~~~~~ll~~a----~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
.+++|+.++..+.+.+ ++. +.++||++||..++....
T Consensus 108 ~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~~~~-------------------------------------- 148 (249)
T 1o5i_A 108 AIDSLFLNMIKIVRNYLPAMKEK-GWGRIVAITSFSVISPIE-------------------------------------- 148 (249)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTSCCT--------------------------------------
T ss_pred HHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEEcchHhcCCCC--------------------------------------
Confidence 8899999877665543 343 567999999987653211
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHH-HHhcCcceeecCCCCccc
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALAL-GAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~l~~~~~~~~ 342 (366)
....|+.+|...+.+.+... +++++++++||.|+++.... +. . .... ..... ....
T Consensus 149 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~---~~---~---~~~~~~~~~~---------~p~~ 210 (249)
T 1o5i_A 149 NLYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKE---LL---S---EEKKKQVESQ---------IPMR 210 (249)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHH---HS---C---HHHHHHHHTT---------STTS
T ss_pred CCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCccCcccc---cc---h---hhHHHHHHhc---------CCCC
Confidence 01679999999998887654 68999999999999874310 00 0 0111 11111 1124
Q ss_pred CcccHHHHHHHHHHHHHhhh
Q psy17528 343 DVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~~ 362 (366)
.+++.+|+|++++.++....
T Consensus 211 ~~~~~~dvA~~i~~l~s~~~ 230 (249)
T 1o5i_A 211 RMAKPEEIASVVAFLCSEKA 230 (249)
T ss_dssp SCBCHHHHHHHHHHHHSGGG
T ss_pred CCcCHHHHHHHHHHHcCccc
Confidence 58899999999999887543
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.7e-17 Score=152.61 Aligned_cols=196 Identities=13% Similarity=0.129 Sum_probs=138.7
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++++|+||||+|+||.+++++|++.| ++|++++|+....
T Consensus 18 ~l~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~~------------------------------------ 58 (253)
T 2nm0_A 18 SHMSRSVLVTGGNRGIGLAIARAFADAG---DKVAITYRSGEPP------------------------------------ 58 (253)
T ss_dssp --CCCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSSCCC------------------------------------
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCChHhh------------------------------------
Confidence 4568999999999999999999999999 8999999975321
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHI 190 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~ 190 (366)
..+.++.+|+++.+ .+..+++ .+|++|||||.... ...+
T Consensus 59 ---------------------~~~~~~~~Dl~d~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~ 111 (253)
T 2nm0_A 59 ---------------------EGFLAVKCDITDTE------QVEQAYKEIEETHGPVEVLIANAGVTKDQLLMRMSEEDF 111 (253)
T ss_dssp ---------------------TTSEEEECCTTSHH------HHHHHHHHHHHHTCSCSEEEEECSCCTTTC---CCTTTT
T ss_pred ---------------------ccceEEEecCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHH
Confidence 23678899999976 6666554 47999999997532 2456
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 191 RTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
+..+++|+.++..+++++.+. .+..+||++||..++.... .
T Consensus 112 ~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~-------------~----------------------- 155 (253)
T 2nm0_A 112 TSVVETNLTGTFRVVKRANRAMLRAKKGRVVLISSVVGLLGSA-------------G----------------------- 155 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCCCCCHH-------------H-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCCCC-------------C-----------------------
Confidence 788999999999888866431 1457999999986542210 0
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
...|+.+|...+.+.+... .++++++++||.|.++...... . ......... ....
T Consensus 156 --~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~---~------~~~~~~~~~---------~p~~ 215 (253)
T 2nm0_A 156 --QANYAASKAGLVGFARSLARELGSRNITFNVVAPGFVDTDMTKVLT---D------EQRANIVSQ---------VPLG 215 (253)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEECSBCC------------------CHHHHHTT---------CTTC
T ss_pred --cHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhcC---H------HHHHHHHhc---------CCCC
Confidence 1579999999998887654 6899999999999776432110 0 000111111 1123
Q ss_pred CcccHHHHHHHHHHHHHhhh
Q psy17528 343 DVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~~ 362 (366)
.++..+|+|++++.++..+.
T Consensus 216 ~~~~p~dvA~~i~~l~s~~~ 235 (253)
T 2nm0_A 216 RYARPEEIAATVRFLASDDA 235 (253)
T ss_dssp SCBCHHHHHHHHHHHHSGGG
T ss_pred CCcCHHHHHHHHHHHhCccc
Confidence 57899999999999887653
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.9e-17 Score=156.14 Aligned_cols=213 Identities=13% Similarity=0.092 Sum_probs=143.5
Q ss_pred CCCcccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC-------CCcCHHHHHHHHhhhhhhhhhhhcC
Q psy17528 38 TLSPIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR-------GSTSITQRVYNYFNDAVFDRMRLEC 110 (366)
Q Consensus 38 ~~~~~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~-------~~~~~~~~i~~~~~~~~~~~~~~~~ 110 (366)
+.+.+...++++++|||||+|+||.+++++|++.| .+|++++|+. ......+.+.+.+. .
T Consensus 17 ~~p~~m~~l~gk~vlVTGas~GIG~aia~~la~~G---~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~--------~-- 83 (322)
T 3qlj_A 17 QGPGSMGVVDGRVVIVTGAGGGIGRAHALAFAAEG---ARVVVNDIGVGLDGSPASGGSAAQSVVDEIT--------A-- 83 (322)
T ss_dssp -----CCTTTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEECCCBCTTSSBTCTTSHHHHHHHHHH--------H--
T ss_pred cCCchhcccCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCcccccccccccHHHHHHHHHHHH--------h--
Confidence 33444456789999999999999999999999999 8999998862 11122222222111 1
Q ss_pred CCCCCccccccccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcc
Q psy17528 111 PNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAAT 183 (366)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~ 183 (366)
...++.++.+|+++.+ .+..+++ .+|++|||||.
T Consensus 84 ---------------------------------~~~~~~~~~~Dv~d~~------~v~~~~~~~~~~~g~iD~lv~nAg~ 124 (322)
T 3qlj_A 84 ---------------------------------AGGEAVADGSNVADWD------QAAGLIQTAVETFGGLDVLVNNAGI 124 (322)
T ss_dssp ---------------------------------TTCEEEEECCCTTSHH------HHHHHHHHHHHHHSCCCEEECCCCC
T ss_pred ---------------------------------cCCcEEEEECCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 1357888999999976 6666654 78999999997
Q ss_pred cC-------hhhhHHHHHHHHHHHHHHHHHHHHhc----C-----CCcEEEEeeCcceecCccccccccCCCCCChHHHH
Q psy17528 184 VR-------FDEHIRTAYNINVKGTQTILALAKRM----K-----GLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELS 247 (366)
Q Consensus 184 ~~-------~~~~~~~~~~~nv~~~~~ll~~a~~~----~-----~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~ 247 (366)
.. ....++..+++|+.++..+++++... . .-.+||++||..++....
T Consensus 125 ~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~----------------- 187 (322)
T 3qlj_A 125 VRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAGLQGSV----------------- 187 (322)
T ss_dssp CCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHCBT-----------------
T ss_pred CCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcCHHHccCCC-----------------
Confidence 53 23456788999999999988876432 0 114899999986542211
Q ss_pred HHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHH
Q psy17528 248 ALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMAL 322 (366)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~ 322 (366)
....|+.+|...+.+.+.+. +|+.+++++|| +..+..... ....
T Consensus 188 ---------------------~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG-~~t~~~~~~---~~~~------ 236 (322)
T 3qlj_A 188 ---------------------GQGNYSAAKAGIATLTLVGAAEMGRYGVTVNAIAPS-ARTRMTETV---FAEM------ 236 (322)
T ss_dssp ---------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-TTSCCSCCS---CCC-------
T ss_pred ---------------------CCccHHHHHHHHHHHHHHHHHHhcccCcEEEEecCC-CCCccchhh---hhhh------
Confidence 11689999999999887765 68999999999 655433211 0000
Q ss_pred HHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 323 ALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 323 ~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
.........++..+|+|++++.++....
T Consensus 237 ------------~~~~~~~~~~~~pedva~~v~~L~s~~~ 264 (322)
T 3qlj_A 237 ------------MATQDQDFDAMAPENVSPLVVWLGSAEA 264 (322)
T ss_dssp -------------------CCTTCGGGTHHHHHHHTSGGG
T ss_pred ------------hhccccccCCCCHHHHHHHHHHHhCccc
Confidence 0011223456789999999999886543
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-17 Score=153.83 Aligned_cols=205 Identities=12% Similarity=0.109 Sum_probs=144.4
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++|+++||||+|+||.+++++|++.| .+|++++|+... +.+....
T Consensus 3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G---~~V~~~~r~~~~------~~~~~~~------------------------ 49 (247)
T 3rwb_A 3 RLAGKTALVTGAAQGIGKAIAARLAADG---ATVIVSDINAEG------AKAAAAS------------------------ 49 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEECSCHHH------HHHHHHH------------------------
T ss_pred CcCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCHHH------HHHHHHH------------------------
Confidence 4678999999999999999999999999 889999987421 1111100
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHI 190 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~ 190 (366)
...++.++.+|+++.+ .+..+++ ++|++|||||... ....+
T Consensus 50 -------------------~~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~ 104 (247)
T 3rwb_A 50 -------------------IGKKARAIAADISDPG------SVKALFAEIQALTGGIDILVNNASIVPFVAWDDVDLDHW 104 (247)
T ss_dssp -------------------HCTTEEECCCCTTCHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHH
T ss_pred -------------------hCCceEEEEcCCCCHH------HHHHHHHHHHHHCCCCCEEEECCCCCCCCCcccCCHHHH
Confidence 1256888999999976 6666664 6899999999753 23456
Q ss_pred HHHHHHHHHHHHHHHHHH----HhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 191 RTAYNINVKGTQTILALA----KRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a----~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
+..+++|+.++..+.+++ ++.+...++|++||...+....
T Consensus 105 ~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------------------------------ 148 (247)
T 3rwb_A 105 RKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFAGTP------------------------------------ 148 (247)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHTCT------------------------------------
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhccCCC------------------------------------
Confidence 788999999999888874 3332357999999986542211
Q ss_pred CCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcc
Q psy17528 267 GGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNIS 341 (366)
Q Consensus 267 ~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~ 341 (366)
....|+.+|...+.+.+... +++++++++||.|.++.....+.. . ...+. ... ...
T Consensus 149 --~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~---~--~~~~~-~~~-----------~~~ 209 (247)
T 3rwb_A 149 --NMAAYVAAKGGVIGFTRALATELGKYNITANAVTPGLIESDGVKASPHN---E--AFGFV-EML-----------QAM 209 (247)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSGGG---G--GHHHH-HHH-----------SSS
T ss_pred --CchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCccccccChh---H--HHHHH-hcc-----------ccc
Confidence 12689999998888887665 689999999999987633211100 0 00111 110 112
Q ss_pred cCcccHHHHHHHHHHHHHhhh
Q psy17528 342 MDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 342 ~~~v~vdDva~ai~~~~~~~~ 362 (366)
..+...+|+|++++.++....
T Consensus 210 ~r~~~pedva~~v~~L~s~~~ 230 (247)
T 3rwb_A 210 KGKGQPEHIADVVSFLASDDA 230 (247)
T ss_dssp CSCBCHHHHHHHHHHHHSGGG
T ss_pred CCCcCHHHHHHHHHHHhCccc
Confidence 346789999999999887654
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=9.1e-17 Score=149.56 Aligned_cols=211 Identities=14% Similarity=0.068 Sum_probs=145.9
Q ss_pred ccccCCCCeEEEeCCc--chHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccc
Q psy17528 42 IQEFYKDQTIFITGAT--GFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDI 119 (366)
Q Consensus 42 ~~~~~~~~~ilItGat--G~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (366)
....+++|+||||||+ |+||.+++++|++.| .+|++++|+... .+.+.++...
T Consensus 8 ~~~~~~~k~vlITGa~~~~giG~~ia~~l~~~G---~~V~~~~r~~~~---~~~~~~~~~~------------------- 62 (271)
T 3ek2_A 8 HMGFLDGKRILLTGLLSNRSIAYGIAKACKREG---AELAFTYVGDRF---KDRITEFAAE------------------- 62 (271)
T ss_dssp -CCTTTTCEEEECCCCSTTSHHHHHHHHHHHTT---CEEEEEESSGGG---HHHHHHHHHH-------------------
T ss_pred CccccCCCEEEEeCCCCCCcHHHHHHHHHHHcC---CCEEEEecchhh---HHHHHHHHHH-------------------
Confidence 3456679999999999 999999999999999 899999997432 2222222111
Q ss_pred ccccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh------
Q psy17528 120 GITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF------ 186 (366)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~------ 186 (366)
. ..+.++.+|+++.+ .+..+++ ++|++|||||....
T Consensus 63 ---------------------~----~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~ 111 (271)
T 3ek2_A 63 ---------------------F----GSELVFPCDVADDA------QIDALFASLKTHWDSLDGLVHSIGFAPREAIAGD 111 (271)
T ss_dssp ---------------------T----TCCCEEECCTTCHH------HHHHHHHHHHHHCSCEEEEEECCCCCCGGGGSSC
T ss_pred ---------------------c----CCcEEEECCCCCHH------HHHHHHHHHHHHcCCCCEEEECCccCccccccCc
Confidence 1 24678999999977 6666664 67999999997532
Q ss_pred ------hhhHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHH
Q psy17528 187 ------DEHIRTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIA 259 (366)
Q Consensus 187 ------~~~~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~ 259 (366)
...++..+++|+.++..+++.+.+. ....++|++||..++....
T Consensus 112 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~----------------------------- 162 (271)
T 3ek2_A 112 FLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERAIP----------------------------- 162 (271)
T ss_dssp TTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCT-----------------------------
T ss_pred cccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEeccccccCCC-----------------------------
Confidence 2456778999999999999988653 1234899999986542211
Q ss_pred hhhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceee
Q psy17528 260 LLNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVV 334 (366)
Q Consensus 260 ~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l 334 (366)
....|+.+|...+.+.+.+. +++.+++++||.|.++..... .....+.......
T Consensus 163 ---------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~-------~~~~~~~~~~~~~----- 221 (271)
T 3ek2_A 163 ---------NYNTMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTLAASGI-------KSFGKILDFVESN----- 221 (271)
T ss_dssp ---------TTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCC-----CCC-------HHHHHHHHHHHHH-----
T ss_pred ---------CccchhHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccchhhhcc-------cchHHHHHHHHhc-----
Confidence 11689999999999887766 689999999999998654321 1111222222211
Q ss_pred cCCCCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 335 QTDPNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 335 ~~~~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
.....+...+|+|++++.++....
T Consensus 222 ----~~~~~~~~pedva~~i~~l~s~~~ 245 (271)
T 3ek2_A 222 ----SPLKRNVTIEQVGNAGAFLLSDLA 245 (271)
T ss_dssp ----STTSSCCCHHHHHHHHHHHHSGGG
T ss_pred ----CCcCCCCCHHHHHHHHHHHcCccc
Confidence 122346789999999999887643
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.3e-17 Score=150.51 Aligned_cols=204 Identities=16% Similarity=0.136 Sum_probs=143.9
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHH-hCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLR-CCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~-~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
++|++|||||+|+||.+++++|++ .| +.|++.+|+...
T Consensus 3 ~~k~vlITGas~gIG~~~a~~l~~~~g---~~v~~~~~~~~~-------------------------------------- 41 (244)
T 4e4y_A 3 AMANYLVTGGSKGIGKAVVELLLQNKN---HTVINIDIQQSF-------------------------------------- 41 (244)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTSTT---EEEEEEESSCCC--------------------------------------
T ss_pred CCCeEEEeCCCChHHHHHHHHHHhcCC---cEEEEecccccc--------------------------------------
Confidence 578999999999999999999999 66 788888887531
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-----CcCEEEEcCcccC-------hhhhHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-----QTTIIFHIAATVR-------FDEHIRTA 193 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-----~~d~Vih~a~~~~-------~~~~~~~~ 193 (366)
....+.++.+|+++.+ .+..+++ ++|++|||||... ....++..
T Consensus 42 ------------------~~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~ 97 (244)
T 4e4y_A 42 ------------------SAENLKFIKADLTKQQ------DITNVLDIIKNVSFDGIFLNAGILIKGSIFDIDIESIKKV 97 (244)
T ss_dssp ------------------CCTTEEEEECCTTCHH------HHHHHHHHTTTCCEEEEEECCCCCCCBCTTTSCHHHHHHH
T ss_pred ------------------ccccceEEecCcCCHH------HHHHHHHHHHhCCCCEEEECCccCCCCCcccCCHHHHHHH
Confidence 1246789999999987 6777665 6899999999742 23456788
Q ss_pred HHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCch
Q psy17528 194 YNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNS 272 (366)
Q Consensus 194 ~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (366)
+++|+.++..+++.+.+. ....++|++||..++.... ....
T Consensus 98 ~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~--------------------------------------~~~~ 139 (244)
T 4e4y_A 98 LDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCFIAKP--------------------------------------NSFA 139 (244)
T ss_dssp HHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGTCCCT--------------------------------------TBHH
T ss_pred HHHccHHHHHHHHHHHHHhccCcEEEEECCHHHccCCC--------------------------------------CCch
Confidence 999999999999987653 1124899999987652211 1167
Q ss_pred HHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcC--cceeecCCCCcccCcc
Q psy17528 273 YTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTG--LIRVVQTDPNISMDVV 345 (366)
Q Consensus 273 Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~l~~~~~~~~~~v 345 (366)
|+.+|...+.+.+.+. +++++++++||.|.++.... .. .......... ..............+.
T Consensus 140 Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~-------~~--~~~~~~~~~~~~~~~~~~~~~~p~~r~~ 210 (244)
T 4e4y_A 140 YTLSKGAIAQMTKSLALDLAKYQIRVNTVCPGTVDTDLYRN-------LI--QKYANNVGISFDEAQKQEEKEFPLNRIA 210 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESCBCCHHHHH-------HH--HHHHHHHTCCHHHHHHHHHTTSTTSSCB
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCeEEEEEecCccCchhhHH-------HH--HhhhhhcCCCHHHHHHHHhhcCCCCCCc
Confidence 9999999999987765 68999999999998753210 00 0000000000 0000011122345688
Q ss_pred cHHHHHHHHHHHHHhhh
Q psy17528 346 PGDRVINAMAALAWYFL 362 (366)
Q Consensus 346 ~vdDva~ai~~~~~~~~ 362 (366)
..+|+|++++.++....
T Consensus 211 ~p~dvA~~v~~l~s~~~ 227 (244)
T 4e4y_A 211 QPQEIAELVIFLLSDKS 227 (244)
T ss_dssp CHHHHHHHHHHHHSGGG
T ss_pred CHHHHHHHHHHHhcCcc
Confidence 99999999999987654
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=4.2e-17 Score=153.13 Aligned_cols=211 Identities=11% Similarity=0.062 Sum_probs=144.5
Q ss_pred cccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccc
Q psy17528 43 QEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGIT 122 (366)
Q Consensus 43 ~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (366)
...+++|++|||||+|+||.+++++|++.| ++|++++|+... .+.+.+.+. ..
T Consensus 16 ~~~l~~k~~lVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~---~~~~~~~l~-------~~-------------- 68 (267)
T 1vl8_A 16 VFDLRGRVALVTGGSRGLGFGIAQGLAEAG---CSVVVASRNLEE---ASEAAQKLT-------EK-------------- 68 (267)
T ss_dssp -CCCTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHHHH-------HH--------------
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHHHH-------Hh--------------
Confidence 344668999999999999999999999999 889999997421 111111110 00
Q ss_pred cccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hh
Q psy17528 123 HRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DE 188 (366)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~ 188 (366)
...++.++.+|+++.+ .+..+++ ++|+||||||.... ..
T Consensus 69 ---------------------~~~~~~~~~~Dl~~~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~ 121 (267)
T 1vl8_A 69 ---------------------YGVETMAFRCDVSNYE------EVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLD 121 (267)
T ss_dssp ---------------------HCCCEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHH
T ss_pred ---------------------cCCeEEEEEcCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHH
Confidence 1246788999999876 6666554 68999999997531 24
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh---cCCCcEEEEeeCcc-eecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhc
Q psy17528 189 HIRTAYNINVKGTQTILALAKR---MKGLKSFVHVSTAY-CNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEH 264 (366)
Q Consensus 189 ~~~~~~~~nv~~~~~ll~~a~~---~~~~~~~v~iSS~~-~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 264 (366)
.++..+++|+.++..+++++.+ ..+.++||++||.. ..... +
T Consensus 122 ~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~----------~------------------------ 167 (267)
T 1vl8_A 122 EFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVTM----------P------------------------ 167 (267)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCCCS----------S------------------------
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCcchhccCC----------C------------------------
Confidence 5677899999999998887643 12567999999976 32111 0
Q ss_pred ccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCC
Q psy17528 265 IIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPN 339 (366)
Q Consensus 265 ~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~ 339 (366)
....|+.+|...+.+.+... .++++++++||.|.++.... +.. . ...........
T Consensus 168 ----~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~---~~~--~--~~~~~~~~~~~--------- 227 (267)
T 1vl8_A 168 ----NISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEA---VFS--D--PEKLDYMLKRI--------- 227 (267)
T ss_dssp ----SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHH---HHT--C--HHHHHHHHHTC---------
T ss_pred ----CChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCccccccc---ccc--C--hHHHHHHHhhC---------
Confidence 11689999999999887765 58999999999998764210 000 0 01111111111
Q ss_pred cccCcccHHHHHHHHHHHHHhh
Q psy17528 340 ISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 340 ~~~~~v~vdDva~ai~~~~~~~ 361 (366)
....++..+|+|++++.++...
T Consensus 228 p~~~~~~p~dvA~~v~~l~s~~ 249 (267)
T 1vl8_A 228 PLGRTGVPEDLKGVAVFLASEE 249 (267)
T ss_dssp TTSSCBCGGGGHHHHHHHHSGG
T ss_pred CCCCCcCHHHHHHHHHHHcCcc
Confidence 1234789999999999988654
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-16 Score=151.62 Aligned_cols=209 Identities=8% Similarity=0.009 Sum_probs=145.8
Q ss_pred ccCCCCeEEEeCCcch--HHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccc
Q psy17528 44 EFYKDQTIFITGATGF--LGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGI 121 (366)
Q Consensus 44 ~~~~~~~ilItGatG~--IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (366)
..+++|+++||||+|+ ||.+++++|++.| .+|+++.|+.. ..+.+.++...
T Consensus 27 ~~l~gk~~lVTGasg~~GIG~aia~~la~~G---~~V~~~~r~~~---~~~~~~~~~~~--------------------- 79 (293)
T 3grk_A 27 GLLQGKRGLILGVANNRSIAWGIAKAAREAG---AELAFTYQGDA---LKKRVEPLAEE--------------------- 79 (293)
T ss_dssp CTTTTCEEEEECCCSSSSHHHHHHHHHHHTT---CEEEEEECSHH---HHHHHHHHHHH---------------------
T ss_pred ccCCCCEEEEEcCCCCCcHHHHHHHHHHHCC---CEEEEEcCCHH---HHHHHHHHHHh---------------------
Confidence 3467899999999988 9999999999999 88999998732 12222221110
Q ss_pred ccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh--------
Q psy17528 122 THRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------- 186 (366)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------- 186 (366)
..++.++.+|+++.+ .+..+++ ++|++|||||....
T Consensus 80 -----------------------~~~~~~~~~Dv~d~~------~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~ 130 (293)
T 3grk_A 80 -----------------------LGAFVAGHCDVADAA------SIDAVFETLEKKWGKLDFLVHAIGFSDKDELTGRYI 130 (293)
T ss_dssp -----------------------HTCEEEEECCTTCHH------HHHHHHHHHHHHTSCCSEEEECCCCCCHHHHTSCGG
T ss_pred -----------------------cCCceEEECCCCCHH------HHHHHHHHHHHhcCCCCEEEECCccCCccccccccc
Confidence 135788999999986 6666654 68999999997531
Q ss_pred ---hhhHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhh
Q psy17528 187 ---DEHIRTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLN 262 (366)
Q Consensus 187 ---~~~~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 262 (366)
...++..+++|+.++..+++.+.+. ....+||++||..++....
T Consensus 131 ~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~~-------------------------------- 178 (293)
T 3grk_A 131 DTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAEKVMP-------------------------------- 178 (293)
T ss_dssp GCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGTSBCT--------------------------------
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhccCCC--------------------------------
Confidence 3456788999999999999987653 2346899999986653211
Q ss_pred hcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCC
Q psy17528 263 EHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTD 337 (366)
Q Consensus 263 ~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~ 337 (366)
....|+.+|...+.+.+.+. +|+.+++++||.|.++....... ...........
T Consensus 179 ------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~-------~~~~~~~~~~~-------- 237 (293)
T 3grk_A 179 ------NYNVMGVAKAALEASVKYLAVDLGPQNIRVNAISAGPIKTLAASGIGD-------FRYILKWNEYN-------- 237 (293)
T ss_dssp ------TTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC------CC-------HHHHHHHHHHH--------
T ss_pred ------chHHHHHHHHHHHHHHHHHHHHHhHhCCEEEEEecCCCcchhhhcccc-------hHHHHHHHHhc--------
Confidence 11689999999999887765 68999999999999875432111 11111111111
Q ss_pred CCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 338 PNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 338 ~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
.....+...+|+|++++.++....
T Consensus 238 -~p~~r~~~pedvA~~v~~L~s~~~ 261 (293)
T 3grk_A 238 -APLRRTVTIDEVGDVGLYFLSDLS 261 (293)
T ss_dssp -STTSSCCCHHHHHHHHHHHHSGGG
T ss_pred -CCCCCCCCHHHHHHHHHHHcCccc
Confidence 112346789999999999887543
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.3e-16 Score=149.33 Aligned_cols=226 Identities=15% Similarity=0.100 Sum_probs=150.1
Q ss_pred ccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCc------CHHHHHHHHhhhhhhhhhhhcCCCCCC
Q psy17528 42 IQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGST------SITQRVYNYFNDAVFDRMRLECPNYAD 115 (366)
Q Consensus 42 ~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~~ 115 (366)
+...+++|+++||||+|+||.+++++|++.| .+|++++|+.... ...+++.+... .+.
T Consensus 22 m~~~l~gk~~lVTGas~GIG~aia~~la~~G---~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-------- 85 (299)
T 3t7c_A 22 MAGKVEGKVAFITGAARGQGRSHAITLAREG---ADIIAIDVCKQLDGVKLPMSTPDDLAETVR-----QVE-------- 85 (299)
T ss_dssp CCCTTTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEECCSCCTTCCSCCCCHHHHHHHHH-----HHH--------
T ss_pred cccccCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEecccccccccccccCHHHHHHHHH-----HHH--------
Confidence 3445778999999999999999999999999 8999999874211 01122222111 111
Q ss_pred ccccccccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC---
Q psy17528 116 KVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR--- 185 (366)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~--- 185 (366)
....++.++.+|+++.+ .+..+++ .+|++|||||...
T Consensus 86 ---------------------------~~~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~ 132 (299)
T 3t7c_A 86 ---------------------------ALGRRIIASQVDVRDFD------AMQAAVDDGVTQLGRLDIVLANAALASEGT 132 (299)
T ss_dssp ---------------------------HTTCCEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCC
T ss_pred ---------------------------hcCCceEEEECCCCCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCC
Confidence 12357889999999986 6666654 6899999999643
Q ss_pred -----hhhhHHHHHHHHHHHHHHHHHHHHh----cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchH
Q psy17528 186 -----FDEHIRTAYNINVKGTQTILALAKR----MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDE 256 (366)
Q Consensus 186 -----~~~~~~~~~~~nv~~~~~ll~~a~~----~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~ 256 (366)
....++..+++|+.++..+.+++.. .++..+||++||..++....
T Consensus 133 ~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~-------------------------- 186 (299)
T 3t7c_A 133 RLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGLRGAE-------------------------- 186 (299)
T ss_dssp CTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCGGGTSCCT--------------------------
T ss_pred chhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccCCC--------------------------
Confidence 1345678999999999998887643 22357899999986652211
Q ss_pred HHHhhhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCcc---cccc--chHHHHHHHH
Q psy17528 257 EIALLNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLW---IKGF--NGVMALALGA 326 (366)
Q Consensus 257 ~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~---~~~~--~~~~~~~~~~ 326 (366)
....|+.+|...+.+.+.+. +|+.+++++||.|.++.......+ .... .....+....
T Consensus 187 ------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (299)
T 3t7c_A 187 ------------NIGNYIASKHGLHGLMRTMALELGPRNIRVNIVCPSSVATPMLLNEPTYRMFRPDLENPTVEDFQVAS 254 (299)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHHHHHHHCTTSSSCCHHHHHHHH
T ss_pred ------------CcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCccCccccccchhhhhhhhhccchhhHHHHHh
Confidence 12689999999998887765 589999999999998754311000 0000 0000000000
Q ss_pred hcCcceeecCCCCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 327 GTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 327 ~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
. .. .... ..+...+|+|++++.++...+
T Consensus 255 ~------~~-~~~p-~r~~~pedvA~~v~fL~s~~a 282 (299)
T 3t7c_A 255 R------QM-HVLP-IPYVEPADISNAILFLVSDDA 282 (299)
T ss_dssp H------HH-SSSS-CSCBCHHHHHHHHHHHHSGGG
T ss_pred h------hh-cccC-cCCCCHHHHHHHHHHHhCccc
Confidence 0 00 0011 357899999999999987654
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.5e-17 Score=153.64 Aligned_cols=212 Identities=14% Similarity=0.115 Sum_probs=147.1
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
..+++|+++||||+|+||.+++++|++.| .+|++++|+... .+...+.+ ..
T Consensus 23 ~~l~~k~~lVTGas~GIG~aia~~l~~~G---~~V~~~~r~~~~---~~~~~~~~--------~~--------------- 73 (277)
T 4fc7_A 23 DLLRDKVAFITGGGSGIGFRIAEIFMRHG---CHTVIASRSLPR---VLTAARKL--------AG--------------- 73 (277)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHTTT---CEEEEEESCHHH---HHHHHHHH--------HH---------------
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHHH--------HH---------------
Confidence 44678999999999999999999999999 899999997432 11111111 00
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhh
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEH 189 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~ 189 (366)
....++.++.+|+++.+ .+..+++ ++|++|||||... ....
T Consensus 74 -------------------~~~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~ 128 (277)
T 4fc7_A 74 -------------------ATGRRCLPLSMDVRAPP------AVMAAVDQALKEFGRIDILINCAAGNFLCPAGALSFNA 128 (277)
T ss_dssp -------------------HHSSCEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHH
T ss_pred -------------------hcCCcEEEEEcCCCCHH------HHHHHHHHHHHHcCCCCEEEECCcCCCCCCcccCCHHH
Confidence 01257889999999976 6666554 6899999999642 2345
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 190 IRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 190 ~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
++..+++|+.++..+.+.+.+. .+..+||++||..++....
T Consensus 129 ~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------------------------------ 172 (277)
T 4fc7_A 129 FKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLGNRGQA------------------------------------ 172 (277)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCSHHHHTCT------------------------------------
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCCCCC------------------------------------
Confidence 6789999999999998876431 1346899999986552211
Q ss_pred CCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcc
Q psy17528 267 GGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNIS 341 (366)
Q Consensus 267 ~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~ 341 (366)
....|+.+|...+.+.+.+. +|+++++++||.|.++... ..+............. ...
T Consensus 173 --~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~------~~~~~~~~~~~~~~~~---------~p~ 235 (277)
T 4fc7_A 173 --LQVHAGSAKAAVDAMTRHLAVEWGPQNIRVNSLAPGPISGTEGL------RRLGGPQASLSTKVTA---------SPL 235 (277)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSSSHHH------HHHSCCHHHHHHHHHT---------STT
T ss_pred --CcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCEecchhh------hhccCCHHHHHHHhcc---------CCC
Confidence 12689999999999887765 6899999999999986311 0000001111111111 123
Q ss_pred cCcccHHHHHHHHHHHHHhhh
Q psy17528 342 MDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 342 ~~~v~vdDva~ai~~~~~~~~ 362 (366)
..+...+|+|++++.++...+
T Consensus 236 ~r~~~p~dvA~~v~fL~s~~~ 256 (277)
T 4fc7_A 236 QRLGNKTEIAHSVLYLASPLA 256 (277)
T ss_dssp SSCBCHHHHHHHHHHHHSGGG
T ss_pred CCCcCHHHHHHHHHHHcCCcc
Confidence 457889999999999887543
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-16 Score=150.56 Aligned_cols=206 Identities=12% Similarity=0.100 Sum_probs=139.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|++|||||+|+||.+++++|++.| .+|++++|+... .+.+.+.+. .
T Consensus 2 l~~k~~lVTGas~GIG~aia~~la~~G---~~V~~~~r~~~~---~~~~~~~l~--------~----------------- 50 (264)
T 3tfo_A 2 VMDKVILITGASGGIGEGIARELGVAG---AKILLGARRQAR---IEAIATEIR--------D----------------- 50 (264)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEESSHHH---HHHHHHHHH--------H-----------------
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCC---CEEEEEECCHHH---HHHHHHHHH--------h-----------------
Confidence 357899999999999999999999999 889999997432 122222111 1
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
...++.++.+|+++.+ .+..+++ ++|++|||||... ....++
T Consensus 51 ------------------~~~~~~~~~~Dv~d~~------~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~ 106 (264)
T 3tfo_A 51 ------------------AGGTALAQVLDVTDRH------SVAAFAQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWE 106 (264)
T ss_dssp ------------------TTCEEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHH
T ss_pred ------------------cCCcEEEEEcCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHH
Confidence 1356788999999976 6666554 6899999999753 234567
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
..+++|+.++..+.+.+.+. .+..+||++||..++....
T Consensus 107 ~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~~-------------------------------------- 148 (264)
T 3tfo_A 107 RMIDVNIKGVLWGIGAVLPIMEAQRSGQIINIGSIGALSVVP-------------------------------------- 148 (264)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCT--------------------------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEEcCHHHcccCC--------------------------------------
Confidence 88999999998887765431 2456999999987652211
Q ss_pred CCchHHHHHHHHHHHHHHhc---CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcc
Q psy17528 269 KPNSYTLTKATAEDLVRQVG---HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVV 345 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~---~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v 345 (366)
....|+.+|...+.+.+... .++++++++||.|.++....... .... ... ......++
T Consensus 149 ~~~~Y~asKaal~~l~~~la~e~~gIrvn~v~PG~v~T~~~~~~~~-------------~~~~----~~~--~~~~~~~~ 209 (264)
T 3tfo_A 149 TAAVYCATKFAVRAISDGLRQESTNIRVTCVNPGVVESELAGTITH-------------EETM----AAM--DTYRAIAL 209 (264)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHCSSEEEEEEEECCC------------------------------------------CC
T ss_pred CChhHHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCcCcccccccc-------------hhHH----HHH--HhhhccCC
Confidence 11679999999999987766 58999999999998764321100 0000 000 00011247
Q ss_pred cHHHHHHHHHHHHHhhhh
Q psy17528 346 PGDRVINAMAALAWYFLF 363 (366)
Q Consensus 346 ~vdDva~ai~~~~~~~~~ 363 (366)
..+|+|++++.++..+..
T Consensus 210 ~pedvA~~v~~l~s~~~~ 227 (264)
T 3tfo_A 210 QPADIARAVRQVIEAPQS 227 (264)
T ss_dssp CHHHHHHHHHHHHHSCTT
T ss_pred CHHHHHHHHHHHhcCCcc
Confidence 899999999999987653
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-16 Score=149.83 Aligned_cols=208 Identities=13% Similarity=0.077 Sum_probs=141.3
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|++|||||+|+||.+++++|++.| .+|++..+.... ..+.+.+.+. .
T Consensus 25 ~~~k~~lVTGas~GIG~aia~~la~~G---~~Vv~~~~~~~~--~~~~~~~~~~--------~----------------- 74 (267)
T 3u5t_A 25 ETNKVAIVTGASRGIGAAIAARLASDG---FTVVINYAGKAA--AAEEVAGKIE--------A----------------- 74 (267)
T ss_dssp --CCEEEEESCSSHHHHHHHHHHHHHT---CEEEEEESSCSH--HHHHHHHHHH--------H-----------------
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEcCCCHH--HHHHHHHHHH--------h-----------------
Confidence 357999999999999999999999999 888887665431 1222222111 1
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
...++.++.+|+++.+ .+..+++ ++|++|||||... ....++
T Consensus 75 ------------------~~~~~~~~~~Dl~~~~------~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~ 130 (267)
T 3u5t_A 75 ------------------AGGKALTAQADVSDPA------AVRRLFATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFD 130 (267)
T ss_dssp ------------------TTCCEEEEECCTTCHH------HHHHHHHHHHHHHSCEEEEEECCCCCCCCCGGGCCHHHHH
T ss_pred ------------------cCCeEEEEEcCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHH
Confidence 1357889999999976 6666654 6899999999753 124567
Q ss_pred HHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCC
Q psy17528 192 TAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKP 270 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (366)
..+++|+.++..+++.+.+. ....++|++||..+.... +..
T Consensus 131 ~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------------------------------------~~~ 172 (267)
T 3u5t_A 131 RVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVGLLH--------------------------------------PSY 172 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHHHCC--------------------------------------TTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhccCC--------------------------------------CCc
Confidence 78899999999999877653 223589999997654221 112
Q ss_pred chHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcc
Q psy17528 271 NSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVV 345 (366)
Q Consensus 271 ~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v 345 (366)
..|+.+|...+.+.+.+. ++++++++.||.|.++..... .. ........ .......+.
T Consensus 173 ~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~--~~------~~~~~~~~---------~~~p~~r~~ 235 (267)
T 3u5t_A 173 GIYAAAKAGVEAMTHVLSKELRGRDITVNAVAPGPTATDLFLEG--KS------DEVRDRFA---------KLAPLERLG 235 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECCBC-------------------CHHHHH---------TSSTTCSCB
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEEECCCcCcccccc--CC------HHHHHHHH---------hcCCCCCCc
Confidence 689999999999998766 589999999999987643210 00 00011111 112234578
Q ss_pred cHHHHHHHHHHHHHhhh
Q psy17528 346 PGDRVINAMAALAWYFL 362 (366)
Q Consensus 346 ~vdDva~ai~~~~~~~~ 362 (366)
..+|+|++++.++....
T Consensus 236 ~pedvA~~v~~L~s~~~ 252 (267)
T 3u5t_A 236 TPQDIAGAVAFLAGPDG 252 (267)
T ss_dssp CHHHHHHHHHHHHSTTT
T ss_pred CHHHHHHHHHHHhCccc
Confidence 89999999999886543
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.73 E-value=4.6e-17 Score=150.90 Aligned_cols=207 Identities=10% Similarity=0.095 Sum_probs=141.4
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
...++++||||||+|+||.+++++|++.| .+|+++++..... ..+.+.. +..
T Consensus 9 ~~~~~k~vlITGas~giG~~ia~~l~~~G---~~v~~~~~~~~~~-~~~~~~~---------~~~--------------- 60 (256)
T 3ezl_A 9 MVMSQRIAYVTGGMGGIGTSICQRLHKDG---FRVVAGCGPNSPR-RVKWLED---------QKA--------------- 60 (256)
T ss_dssp ----CEEEEETTTTSHHHHHHHHHHHHTT---EEEEEEECTTCSS-HHHHHHH---------HHH---------------
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCCHHH-HHHHHHH---------HHh---------------
Confidence 44568999999999999999999999998 8888888543321 1111111 111
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhh
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEH 189 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~ 189 (366)
...++.++.+|+++.+ .+..+++ ++|++|||||... ....
T Consensus 61 --------------------~~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~ 114 (256)
T 3ezl_A 61 --------------------LGFDFYASEGNVGDWD------STKQAFDKVKAEVGEIDVLVNNAGITRDVVFRKMTRED 114 (256)
T ss_dssp --------------------TTCCCEEEECCTTCHH------HHHHHHHHHHHHTCCEEEEEECCCCCCCCCTTTCCHHH
T ss_pred --------------------cCCeeEEEecCCCCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCchhhCCHHH
Confidence 1256889999999976 6666654 6899999999753 2345
Q ss_pred HHHHHHHHHHHHHHHHHHHH----hcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcc
Q psy17528 190 IRTAYNINVKGTQTILALAK----RMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHI 265 (366)
Q Consensus 190 ~~~~~~~nv~~~~~ll~~a~----~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (366)
++..+++|+.++..+.+.+. +. +..+||++||...+....
T Consensus 115 ~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~~~~~~----------------------------------- 158 (256)
T 3ezl_A 115 WQAVIDTNLTSLFNVTKQVIDGMVER-GWGRIINISSVNGQKGQF----------------------------------- 158 (256)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCCCGGGSCS-----------------------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEEcchhhccCCC-----------------------------------
Confidence 67899999999888776653 33 557999999986542211
Q ss_pred cCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCc
Q psy17528 266 IGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNI 340 (366)
Q Consensus 266 ~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~ 340 (366)
....|+.+|...+.+.+.+. +++.+++++||.|.++..... . .......... ..
T Consensus 159 ---~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-------~--~~~~~~~~~~---------~~ 217 (256)
T 3ezl_A 159 ---GQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKAI-------R--PDVLEKIVAT---------IP 217 (256)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTS-------C--HHHHHHHHHH---------ST
T ss_pred ---CCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEEECcccCcccccc-------C--HHHHHHHHhc---------CC
Confidence 12689999998888886655 689999999999987633211 0 1112222211 12
Q ss_pred ccCcccHHHHHHHHHHHHHhh
Q psy17528 341 SMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 341 ~~~~v~vdDva~ai~~~~~~~ 361 (366)
...+...+|+|++++.++...
T Consensus 218 ~~~~~~~~dva~~~~~l~s~~ 238 (256)
T 3ezl_A 218 VRRLGSPDEIGSIVAWLASEE 238 (256)
T ss_dssp TSSCBCHHHHHHHHHHHHSGG
T ss_pred CCCCcCHHHHHHHHHHHhCCc
Confidence 245778999999999988654
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.2e-17 Score=148.02 Aligned_cols=193 Identities=16% Similarity=0.136 Sum_probs=135.8
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
||+||||||+|+||.+++++|++.| .+|++++|+.+. +.+. ...
T Consensus 1 Mk~vlVTGas~gIG~~~a~~l~~~G---~~V~~~~r~~~~------~~~~---------~~~------------------ 44 (230)
T 3guy_A 1 MSLIVITGASSGLGAELAKLYDAEG---KATYLTGRSESK------LSTV---------TNC------------------ 44 (230)
T ss_dssp --CEEEESTTSHHHHHHHHHHHHTT---CCEEEEESCHHH------HHHH---------HHT------------------
T ss_pred CCEEEEecCCchHHHHHHHHHHHCC---CEEEEEeCCHHH------HHHH---------HHH------------------
Confidence 4789999999999999999999999 789999997421 1111 111
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCc----CEEEEcCcccC-------hhhhHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQT----TIIFHIAATVR-------FDEHIRTAYNI 196 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~----d~Vih~a~~~~-------~~~~~~~~~~~ 196 (366)
...++.++.+|+.+.+ .+..+++.+ |+||||||... ....++..+++
T Consensus 45 ----------------~~~~~~~~~~D~~~~~------~v~~~~~~~~~~~d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~ 102 (230)
T 3guy_A 45 ----------------LSNNVGYRARDLASHQ------EVEQLFEQLDSIPSTVVHSAGSGYFGLLQEQDPEQIQTLIEN 102 (230)
T ss_dssp ----------------CSSCCCEEECCTTCHH------HHHHHHHSCSSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHH
T ss_pred ----------------HhhccCeEeecCCCHH------HHHHHHHHHhhcCCEEEEeCCcCCCCccccCCHHHHHHHHHH
Confidence 1356778999999987 788888754 89999999642 23456778999
Q ss_pred HHHHHHHHHHHHHhc--CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHH
Q psy17528 197 NVKGTQTILALAKRM--KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYT 274 (366)
Q Consensus 197 nv~~~~~ll~~a~~~--~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~ 274 (366)
|+.++..+++.+.+. ....++|++||..++.... ....|+
T Consensus 103 N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~~~~--------------------------------------~~~~Y~ 144 (230)
T 3guy_A 103 NLSSAINVLRELVKRYKDQPVNVVMIMSTAAQQPKA--------------------------------------QESTYC 144 (230)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEEEEECCGGGTSCCT--------------------------------------TCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEeecccCCCCC--------------------------------------CCchhH
Confidence 999999998877543 1123899999987652211 126899
Q ss_pred HHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHH
Q psy17528 275 LTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDR 349 (366)
Q Consensus 275 ~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdD 349 (366)
.+|...+.+.+.+. +++.++.++||.|..+..... . .......++..+|
T Consensus 145 asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-----------------~---------~~~~~~~~~~~~d 198 (230)
T 3guy_A 145 AVKWAVKGLIESVRLELKGKPMKIIAVYPGGMATEFWETS-----------------G---------KSLDTSSFMSAED 198 (230)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCEEEEEEECCC------------------------------------------CCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCeEEEEEECCcccChHHHhc-----------------C---------CCCCcccCCCHHH
Confidence 99999999887766 589999999999887532110 0 0011346789999
Q ss_pred HHHHHHHHHHhhh
Q psy17528 350 VINAMAALAWYFL 362 (366)
Q Consensus 350 va~ai~~~~~~~~ 362 (366)
+|++++.++.++.
T Consensus 199 vA~~i~~l~~~~~ 211 (230)
T 3guy_A 199 AALMIHGALANIG 211 (230)
T ss_dssp HHHHHHHHCCEET
T ss_pred HHHHHHHHHhCcC
Confidence 9999999887554
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=5e-17 Score=154.60 Aligned_cols=213 Identities=15% Similarity=0.149 Sum_probs=147.1
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
..+++|++|||||+|+||.+++++|++.|....+|++.+|+... .+.+.+.+ ...
T Consensus 29 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~---~~~~~~~l--------~~~-------------- 83 (287)
T 3rku_A 29 ERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEK---LEELKKTI--------DQE-------------- 83 (287)
T ss_dssp HHHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHH---HHHHHHHH--------HHH--------------
T ss_pred hhcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHH---HHHHHHHH--------Hhh--------------
Confidence 44678999999999999999999999998333499999997432 12222211 110
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC--------hhh
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR--------FDE 188 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~--------~~~ 188 (366)
. ...++.++.+|+++.+ .+..+++ ++|++|||||... ...
T Consensus 84 -----------------~--~~~~~~~~~~Dv~d~~------~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~ 138 (287)
T 3rku_A 84 -----------------F--PNAKVHVAQLDITQAE------KIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATE 138 (287)
T ss_dssp -----------------C--TTCEEEEEECCTTCGG------GHHHHHHTSCGGGCSCCEEEECCCCCCCCCCTTSCCHH
T ss_pred -----------------C--CCCeEEEEECCCCCHH------HHHHHHHHHHHhcCCCCEEEECCCcCCCCCCcccCCHH
Confidence 0 1257889999999988 7777775 5799999999643 235
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcc
Q psy17528 189 HIRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHI 265 (366)
Q Consensus 189 ~~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (366)
.++..+++|+.++..+++++.+. .+..+||++||..++....
T Consensus 139 ~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~~----------------------------------- 183 (287)
T 3rku_A 139 DIQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRDAYP----------------------------------- 183 (287)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCT-----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECChhhcCCCC-----------------------------------
Confidence 67889999999999998876421 2556999999986542211
Q ss_pred cCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCc
Q psy17528 266 IGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNI 340 (366)
Q Consensus 266 ~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~ 340 (366)
....|+.+|...+.+.+... +|+++++++||.|.++.... ...............
T Consensus 184 ---~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~------~~~~~~~~~~~~~~~----------- 243 (287)
T 3rku_A 184 ---TGSIYCASKFAVGAFTDSLRKELINTKIRVILIAPGLVETEFSLV------RYRGNEEQAKNVYKD----------- 243 (287)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEESCEESSHHHH------HTTTCHHHHHHHHTT-----------
T ss_pred ---CCchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEeCCcCcCccccc------cccCcHHHHHHhhcc-----------
Confidence 12689999999999887765 68999999999998753100 000000111111111
Q ss_pred ccCcccHHHHHHHHHHHHHhhh
Q psy17528 341 SMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 341 ~~~~v~vdDva~ai~~~~~~~~ 362 (366)
...+..+|+|++++.++..+.
T Consensus 244 -~~p~~pedvA~~v~~l~s~~~ 264 (287)
T 3rku_A 244 -TTPLMADDVADLIVYATSRKQ 264 (287)
T ss_dssp -SCCEEHHHHHHHHHHHHTSCT
T ss_pred -cCCCCHHHHHHHHHHHhCCCC
Confidence 113388999999999987654
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-16 Score=152.07 Aligned_cols=216 Identities=13% Similarity=0.134 Sum_probs=144.4
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|+++||||+|+||.+++++|++.| .+|++++|+... .+.+.+. +..
T Consensus 24 l~~k~vlVTGas~gIG~aia~~L~~~G---~~V~~~~r~~~~---~~~~~~~--------l~~----------------- 72 (297)
T 1xhl_A 24 FSGKSVIITGSSNGIGRSAAVIFAKEG---AQVTITGRNEDR---LEETKQQ--------ILK----------------- 72 (297)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHH--------HHH-----------------
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHH--------HHh-----------------
Confidence 568999999999999999999999999 889999997421 1111111 111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh---------hhh
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF---------DEH 189 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~---------~~~ 189 (366)
......++.++.+|+++.+ .+..+++ ++|+||||||.... ...
T Consensus 73 ---------------~~~~~~~~~~~~~Dv~d~~------~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~ 131 (297)
T 1xhl_A 73 ---------------AGVPAEKINAVVADVTEAS------GQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVEL 131 (297)
T ss_dssp ---------------TTCCGGGEEEEECCTTSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCSCCGGGSCHHH
T ss_pred ---------------cCCCCceEEEEecCCCCHH------HHHHHHHHHHHhcCCCCEEEECCCcCcCCCCccccCCHHH
Confidence 0000126889999999976 6666554 78999999996421 235
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 190 IRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 190 ~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
++..+++|+.++..+++++.+. .+ .+||++||..++.... ++
T Consensus 132 ~~~~~~vN~~g~~~l~~~~~~~~~~~~-g~IV~isS~~~~~~~~--------~~-------------------------- 176 (297)
T 1xhl_A 132 YQKTFKLNFQAVIEMTQKTKEHLIKTK-GEIVNVSSIVAGPQAH--------SG-------------------------- 176 (297)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEECCGGGSSSCC--------TT--------------------------
T ss_pred HHHHHhHhhHHHHHHHHHHHHHHHhcC-CEEEEEcCchhccCCC--------CC--------------------------
Confidence 6789999999999988876542 23 7999999986653210 00
Q ss_pred CCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccc-hHHHHHHHHhcCcceeecCCCCc
Q psy17528 267 GGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFN-GVMALALGAGTGLIRVVQTDPNI 340 (366)
Q Consensus 267 ~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~l~~~~~~ 340 (366)
...|+.+|...+.+.+... +|+++++++||.|.++....... ..... ........... ...
T Consensus 177 ---~~~Y~asKaa~~~l~~~la~el~~~gI~v~~v~PG~v~T~~~~~~~~-~~~~~~~~~~~~~~~~~---------~~p 243 (297)
T 1xhl_A 177 ---YPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGL-PETASDKLYSFIGSRKE---------CIP 243 (297)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTC-CHHHHHHHHHHHHHCTT---------TCT
T ss_pred ---cchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcCcccccccc-ccccccchHHHHHHHHh---------cCC
Confidence 1679999999998887654 68999999999998864211000 00000 00011111111 111
Q ss_pred ccCcccHHHHHHHHHHHHHhh
Q psy17528 341 SMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 341 ~~~~v~vdDva~ai~~~~~~~ 361 (366)
...++..+|+|++++.++...
T Consensus 244 ~~r~~~pedvA~~v~~l~s~~ 264 (297)
T 1xhl_A 244 VGHCGKPEEIANIIVFLADRN 264 (297)
T ss_dssp TSSCBCHHHHHHHHHHHHCHH
T ss_pred CCCCcCHHHHHHHHHHHhCCc
Confidence 245889999999999988654
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.73 E-value=8.5e-17 Score=150.28 Aligned_cols=208 Identities=13% Similarity=0.109 Sum_probs=140.2
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|++|||||+|+||.+++++|++.| .+|+++.+.... ..+...+. +.
T Consensus 6 l~~k~vlVTGas~GIG~aia~~la~~G---~~V~~~~~~~~~--~~~~~~~~--------~~------------------ 54 (259)
T 3edm_A 6 FTNRTIVVAGAGRDIGRACAIRFAQEG---ANVVLTYNGAAE--GAATAVAE--------IE------------------ 54 (259)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECSSCH--HHHHHHHH--------HH------------------
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEcCCCHH--HHHHHHHH--------HH------------------
Confidence 578999999999999999999999999 888888555331 11111111 11
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC--------hhhhH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR--------FDEHI 190 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~--------~~~~~ 190 (366)
....++.++.+|+++.+ .+..+++ ++|++|||||... ....+
T Consensus 55 -----------------~~~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~ 111 (259)
T 3edm_A 55 -----------------KLGRSALAIKADLTNAA------EVEAAISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFW 111 (259)
T ss_dssp -----------------TTTSCCEEEECCTTCHH------HHHHHHHHHHHHHCSEEEEEECCCCCCCCCCTTTCCHHHH
T ss_pred -----------------hcCCceEEEEcCCCCHH------HHHHHHHHHHHHhCCCCEEEECCCccCCCCChhhCCHHHH
Confidence 12356789999999986 6666664 6899999998641 13456
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCccee-cCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 191 RTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCN-CDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~-~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
+..+++|+.++..+.+++.+. ....++|++||..++ ... +
T Consensus 112 ~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------------------------------------~ 153 (259)
T 3edm_A 112 HQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGRDGGG--------------------------------------P 153 (259)
T ss_dssp HHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHCCS--------------------------------------T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhccCCC--------------------------------------C
Confidence 788999999999999988764 112489999998654 111 0
Q ss_pred CCchHHHHHHHHHHHHHHhc----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCc
Q psy17528 269 KPNSYTLTKATAEDLVRQVG----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDV 344 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~ 344 (366)
....|+.+|...+.+.+... .++.++.+.||.|.++....... ...............+
T Consensus 154 ~~~~Y~asKaa~~~l~~~la~e~~~~I~vn~v~PG~v~T~~~~~~~~-----------------~~~~~~~~~~~p~~r~ 216 (259)
T 3edm_A 154 GALAYATSKGAVMTFTRGLAKEVGPKIRVNAVCPGMISTTFHDTFTK-----------------PEVRERVAGATSLKRE 216 (259)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCC---------------------------------------CC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCcCcccccccC-----------------hHHHHHHHhcCCCCCC
Confidence 11679999999999987765 44999999999998764321100 0000011112234567
Q ss_pred ccHHHHHHHHHHHHHhhh
Q psy17528 345 VPGDRVINAMAALAWYFL 362 (366)
Q Consensus 345 v~vdDva~ai~~~~~~~~ 362 (366)
.+.+|+|++++.++....
T Consensus 217 ~~pedva~~v~~L~s~~~ 234 (259)
T 3edm_A 217 GSSEDVAGLVAFLASDDA 234 (259)
T ss_dssp BCHHHHHHHHHHHHSGGG
T ss_pred cCHHHHHHHHHHHcCccc
Confidence 899999999999886654
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=99.73 E-value=8.1e-17 Score=151.16 Aligned_cols=219 Identities=13% Similarity=0.081 Sum_probs=147.8
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
..+++|++|||||+|+||.+++++|++.| .+|++++|.... ..+.+.+.+. .
T Consensus 14 ~~l~~k~~lVTGas~gIG~aia~~l~~~G---~~V~~~~~~~~~--~~~~~~~~~~--------~--------------- 65 (270)
T 3is3_A 14 GRLDGKVALVTGSGRGIGAAVAVHLGRLG---AKVVVNYANSTK--DAEKVVSEIK--------A--------------- 65 (270)
T ss_dssp TCCTTCEEEESCTTSHHHHHHHHHHHHTT---CEEEEEESSCHH--HHHHHHHHHH--------H---------------
T ss_pred CCcCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEcCCCHH--HHHHHHHHHH--------h---------------
Confidence 45778999999999999999999999999 889888775421 1122222111 1
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhh
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEH 189 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~ 189 (366)
...++.++.+|+++.+ .+.++++ .+|++|||||... ....
T Consensus 66 --------------------~~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~ 119 (270)
T 3is3_A 66 --------------------LGSDAIAIKADIRQVP------EIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEE 119 (270)
T ss_dssp --------------------TTCCEEEEECCTTSHH------HHHHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHH
T ss_pred --------------------cCCcEEEEEcCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHH
Confidence 1357889999999976 6666654 6899999999753 2346
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 190 IRTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 190 ~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
++..+++|+.++..+.+++.+. ....++|++||...... +. +
T Consensus 120 ~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~---------~~----------------------------~ 162 (270)
T 3is3_A 120 FDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSKDF---------SV----------------------------P 162 (270)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTTTC---------CC----------------------------T
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhccC---------CC----------------------------C
Confidence 6788999999999999987664 22358999999752110 00 0
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCC-cccccc-c-hHHHHHHHHhcCcceeecCCCCc
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMP-LWIKGF-N-GVMALALGAGTGLIRVVQTDPNI 340 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~-~~~~~~-~-~~~~~~~~~~~g~~~~l~~~~~~ 340 (366)
....|+.+|...+.+.+.+. ++++++.++||.|.++...... .+.... . ........... ...
T Consensus 163 ~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~p 233 (270)
T 3is3_A 163 KHSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAH---------ASP 233 (270)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTTHHHHGGGGSTTGGGSCHHHHHHHHHH---------HST
T ss_pred CCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhhhhccccccccchHHHHHHHHh---------cCC
Confidence 12679999999999887765 6899999999999987432100 000000 0 00111111111 112
Q ss_pred ccCcccHHHHHHHHHHHHHhhh
Q psy17528 341 SMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 341 ~~~~v~vdDva~ai~~~~~~~~ 362 (366)
...+...+|+|++++.++...+
T Consensus 234 ~~r~~~p~dvA~~v~~L~s~~~ 255 (270)
T 3is3_A 234 LHRNGWPQDVANVVGFLVSKEG 255 (270)
T ss_dssp TCSCBCHHHHHHHHHHHTSGGG
T ss_pred CCCCCCHHHHHHHHHHHcCCcc
Confidence 3457889999999999886543
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-16 Score=149.50 Aligned_cols=202 Identities=14% Similarity=0.064 Sum_probs=144.0
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||.+++++|++.| ++|++++|+.. ++.+.. ..
T Consensus 4 l~~k~vlITGas~gIG~aia~~l~~~G---~~V~~~~r~~~------~~~~~~---------~~---------------- 49 (263)
T 2a4k_A 4 LSGKTILVTGAASGIGRAALDLFAREG---ASLVAVDREER------LLAEAV---------AA---------------- 49 (263)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHHH---------HT----------------
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHHH---------HH----------------
Confidence 568999999999999999999999999 89999999742 111110 10
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~ 191 (366)
. ..++.++.+|+++.+ ++..+++ .+|++|||||.... ...++
T Consensus 50 ---------------~---~~~~~~~~~D~~~~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~ 105 (263)
T 2a4k_A 50 ---------------L---EAEAIAVVADVSDPK------AVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWE 105 (263)
T ss_dssp ---------------C---CSSEEEEECCTTSHH------HHHHHHHHHHHHHSCCCEEEEGGGGTTTTC----CHHHHH
T ss_pred ---------------h---cCceEEEEcCCCCHH------HHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHH
Confidence 1 146788999999976 6666554 57999999997532 23457
Q ss_pred HHHHHHHHHHHHHHHHHHhcC-CCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCC
Q psy17528 192 TAYNINVKGTQTILALAKRMK-GLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKP 270 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~~-~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (366)
..+++|+.++..+.+++.+.. ...+||++||..++ ... . .
T Consensus 106 ~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~-~~~-------------~-------------------------~ 146 (263)
T 2a4k_A 106 KVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGL-GAF-------------G-------------------------L 146 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTC-CHH-------------H-------------------------H
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhc-CCC-------------C-------------------------c
Confidence 789999999999999877631 24599999998765 210 0 1
Q ss_pred chHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcc
Q psy17528 271 NSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVV 345 (366)
Q Consensus 271 ~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v 345 (366)
..|+.+|...+.+.+... +|+++++++||.|.++..... . ........... ....++
T Consensus 147 ~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-------~--~~~~~~~~~~~---------p~~~~~ 208 (263)
T 2a4k_A 147 AHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAGL-------P--PWAWEQEVGAS---------PLGRAG 208 (263)
T ss_dssp HHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTTS-------C--HHHHHHHHHTS---------TTCSCB
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCcCcCchhhhc-------C--HHHHHHHHhcC---------CCCCCc
Confidence 679999998887776654 689999999999998753321 1 11111111111 123478
Q ss_pred cHHHHHHHHHHHHHhhh
Q psy17528 346 PGDRVINAMAALAWYFL 362 (366)
Q Consensus 346 ~vdDva~ai~~~~~~~~ 362 (366)
+.+|+|++++.++....
T Consensus 209 ~p~dvA~~v~~l~s~~~ 225 (263)
T 2a4k_A 209 RPEEVAQAALFLLSEES 225 (263)
T ss_dssp CHHHHHHHHHHHHSGGG
T ss_pred CHHHHHHHHHHHhCccc
Confidence 99999999999887543
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=6.8e-17 Score=152.46 Aligned_cols=208 Identities=15% Similarity=0.072 Sum_probs=146.6
Q ss_pred ccCCCCeEEEeCCcch--HHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccc
Q psy17528 44 EFYKDQTIFITGATGF--LGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGI 121 (366)
Q Consensus 44 ~~~~~~~ilItGatG~--IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (366)
..+++++|+||||+|+ ||.+++++|++.| .+|++++|+. . .+.+.++ ...
T Consensus 22 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G---~~V~~~~r~~-~---~~~~~~l---------~~~------------ 73 (280)
T 3nrc_A 22 GFLAGKKILITGLLSNKSIAYGIAKAMHREG---AELAFTYVGQ-F---KDRVEKL---------CAE------------ 73 (280)
T ss_dssp CTTTTCEEEECCCCSTTCHHHHHHHHHHHTT---CEEEEEECTT-C---HHHHHHH---------HGG------------
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHHcC---CEEEEeeCch-H---HHHHHHH---------HHh------------
Confidence 3467899999999977 9999999999999 8899999986 1 1222221 111
Q ss_pred ccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh--------
Q psy17528 122 THRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------- 186 (366)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------- 186 (366)
..++.++.+|+++.+ .+..+++ .+|+||||||....
T Consensus 74 -----------------------~~~~~~~~~Dl~~~~------~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~ 124 (280)
T 3nrc_A 74 -----------------------FNPAAVLPCDVISDQ------EIKDLFVELGKVWDGLDAIVHSIAFAPRDQLEGNFI 124 (280)
T ss_dssp -----------------------GCCSEEEECCTTCHH------HHHHHHHHHHHHCSSCCEEEECCCCCCGGGSSSCHH
T ss_pred -----------------------cCCceEEEeecCCHH------HHHHHHHHHHHHcCCCCEEEECCccCCCcccCCccc
Confidence 134788999999976 6666554 57999999997532
Q ss_pred ----hhhHHHHHHHHHHHHHHHHHHHHhc--CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHh
Q psy17528 187 ----DEHIRTAYNINVKGTQTILALAKRM--KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIAL 260 (366)
Q Consensus 187 ----~~~~~~~~~~nv~~~~~ll~~a~~~--~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~ 260 (366)
...+...+++|+.++..+++.+... ....++|++||..++....
T Consensus 125 ~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~------------------------------ 174 (280)
T 3nrc_A 125 DCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEKAMP------------------------------ 174 (280)
T ss_dssp HHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGTSCCT------------------------------
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeccccccCCC------------------------------
Confidence 2345678899999999999887653 2346999999986552211
Q ss_pred hhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeec
Q psy17528 261 LNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQ 335 (366)
Q Consensus 261 ~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~ 335 (366)
....|+.+|...+.+.+... +++.+++++||.|.++..... .............
T Consensus 175 --------~~~~Y~asKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~-------~~~~~~~~~~~~~------ 233 (280)
T 3nrc_A 175 --------SYNTMGVAKASLEATVRYTALALGEDGIKVNAVSAGPIKTLAASGI-------SNFKKMLDYNAMV------ 233 (280)
T ss_dssp --------TTHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCSGGGGC-------TTHHHHHHHHHHH------
T ss_pred --------CchhhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeccccchhhhcC-------cchHHHHHHHHhc------
Confidence 11689999999999887655 689999999999998653221 1111222221111
Q ss_pred CCCCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 336 TDPNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 336 ~~~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
.....+...+|+|++++.++....
T Consensus 234 ---~p~~~~~~pedvA~~v~~l~s~~~ 257 (280)
T 3nrc_A 234 ---SPLKKNVDIMEVGNTVAFLCSDMA 257 (280)
T ss_dssp ---STTCSCCCHHHHHHHHHHTTSGGG
T ss_pred ---CCCCCCCCHHHHHHHHHHHhCccc
Confidence 112347789999999999887543
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.1e-17 Score=153.60 Aligned_cols=208 Identities=13% Similarity=0.158 Sum_probs=139.8
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|++|||||+|+||.+++++|++.| .+|+++.|........+++.+.+.
T Consensus 9 l~~k~vlVTGas~GIG~aia~~la~~G---~~V~~~~r~~~~~~~~~~~~~~~~-------------------------- 59 (262)
T 3ksu_A 9 LKNKVIVIAGGIKNLGALTAKTFALES---VNLVLHYHQAKDSDTANKLKDELE-------------------------- 59 (262)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHTTSS---CEEEEEESCGGGHHHHHHHHHHHH--------------------------
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEecCccCHHHHHHHHHHHH--------------------------
Confidence 568999999999999999999999999 899999886432222222222111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
....++.++.+|+++.+ .+..+++ ++|++|||||... ....++
T Consensus 60 -----------------~~~~~~~~~~~Dv~d~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~ 116 (262)
T 3ksu_A 60 -----------------DQGAKVALYQSDLSNEE------EVAKLFDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFD 116 (262)
T ss_dssp -----------------TTTCEEEEEECCCCSHH------HHHHHHHHHHHHHCSEEEEEECCCCCCSSCGGGCCHHHHH
T ss_pred -----------------hcCCcEEEEECCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHH
Confidence 11357889999999987 6666664 6899999999642 234567
Q ss_pred HHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCC
Q psy17528 192 TAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKP 270 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (366)
..+++|+.++..+.+.+.+. .+..++|++||..++.... ..
T Consensus 117 ~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~--------------------------------------~~ 158 (262)
T 3ksu_A 117 AMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAAYTG--------------------------------------FY 158 (262)
T ss_dssp HHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHHHHHC--------------------------------------CC
T ss_pred HHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhccCCC--------------------------------------CC
Confidence 78999999999999988763 2345899999986542211 11
Q ss_pred chHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcc
Q psy17528 271 NSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVV 345 (366)
Q Consensus 271 ~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v 345 (366)
..|+.+|...+.+.+.+. +++.++.+.||.|..+..... . ................+.
T Consensus 159 ~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~-------~----------~~~~~~~~~~~~~~~r~~ 221 (262)
T 3ksu_A 159 STYAGNKAPVEHYTRAASKELMKQQISVNAIAPGPMDTSFFYGQ-------E----------TKESTAFHKSQAMGNQLT 221 (262)
T ss_dssp CC-----CHHHHHHHHHHHHTTTTTCEEEEEEECCCCTHHHHTC-------C----------------------CCCCSC
T ss_pred chhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCcccccc-------C----------chHHHHHHHhcCcccCCC
Confidence 679999999999887766 689999999999876421100 0 000000111112234578
Q ss_pred cHHHHHHHHHHHHHh
Q psy17528 346 PGDRVINAMAALAWY 360 (366)
Q Consensus 346 ~vdDva~ai~~~~~~ 360 (366)
..+|+|++++.++..
T Consensus 222 ~pedvA~~v~~L~s~ 236 (262)
T 3ksu_A 222 KIEDIAPIIKFLTTD 236 (262)
T ss_dssp CGGGTHHHHHHHHTT
T ss_pred CHHHHHHHHHHHcCC
Confidence 889999999998875
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-16 Score=148.71 Aligned_cols=206 Identities=15% Similarity=0.053 Sum_probs=144.2
Q ss_pred CCCCeEEEeCCc--chHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 46 YKDQTIFITGAT--GFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 46 ~~~~~ilItGat--G~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
+++++|+||||+ |+||.+++++|++.| ++|++++|+... .+.+.++. ..
T Consensus 4 l~~k~vlVTGas~~~gIG~~~a~~l~~~G---~~V~~~~r~~~~---~~~~~~l~---------~~-------------- 54 (275)
T 2pd4_A 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQG---ATLAFTYLNESL---EKRVRPIA---------QE-------------- 54 (275)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTT---CEEEEEESSTTT---HHHHHHHH---------HH--------------
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHHH---------Hh--------------
Confidence 568999999999 999999999999998 889999998641 12222211 10
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh----------
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF---------- 186 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~---------- 186 (366)
. ..+.++.+|+++.+ .+..+++ ++|++|||||....
T Consensus 55 -----------------~----~~~~~~~~D~~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~ 107 (275)
T 2pd4_A 55 -----------------L----NSPYVYELDVSKEE------HFKSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLET 107 (275)
T ss_dssp -----------------T----TCCCEEECCTTCHH------HHHHHHHHHHHHTSCEEEEEECCCCCCGGGGSSCGGGC
T ss_pred -----------------c----CCcEEEEcCCCCHH------HHHHHHHHHHHHcCCCCEEEECCccCccccCCCCcccC
Confidence 1 13578899999976 6666554 67999999997532
Q ss_pred -hhhHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhc
Q psy17528 187 -DEHIRTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEH 264 (366)
Q Consensus 187 -~~~~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 264 (366)
...++..+++|+.++..+++++.+. ....+||++||.......
T Consensus 108 ~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~----------------------------------- 152 (275)
T 2pd4_A 108 SKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYM----------------------------------- 152 (275)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBC-----------------------------------
T ss_pred CHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEecchhcCCC-----------------------------------
Confidence 2356788999999999999988763 112589999997654211
Q ss_pred ccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCC
Q psy17528 265 IIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPN 339 (366)
Q Consensus 265 ~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~ 339 (366)
+....|+.+|...+.+.+.+. +++++++++||.|.++...... ....+........
T Consensus 153 ---~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~-------~~~~~~~~~~~~~--------- 213 (275)
T 2pd4_A 153 ---AHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIA-------DFRMILKWNEINA--------- 213 (275)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGST-------THHHHHHHHHHHS---------
T ss_pred ---CCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCccccchhhhcc-------ccHHHHHHHHhcC---------
Confidence 011679999999999887765 5899999999999987532111 1111111111111
Q ss_pred cccCcccHHHHHHHHHHHHHhh
Q psy17528 340 ISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 340 ~~~~~v~vdDva~ai~~~~~~~ 361 (366)
....+...+|+|++++.++...
T Consensus 214 p~~~~~~p~dva~~~~~l~s~~ 235 (275)
T 2pd4_A 214 PLRKNVSLEEVGNAGMYLLSSL 235 (275)
T ss_dssp TTSSCCCHHHHHHHHHHHHSGG
T ss_pred CcCCCCCHHHHHHHHHHHhCcc
Confidence 1123678999999999988654
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=4.1e-16 Score=148.65 Aligned_cols=208 Identities=12% Similarity=-0.007 Sum_probs=147.9
Q ss_pred cCCCCeEEEeCCcc--hHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccc
Q psy17528 45 FYKDQTIFITGATG--FLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGIT 122 (366)
Q Consensus 45 ~~~~~~ilItGatG--~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (366)
.+++|+++||||+| +||.+++++|++.| .+|++++|+... .+.+.+....
T Consensus 27 ~l~~k~vlVTGasg~~GIG~~ia~~la~~G---~~V~~~~r~~~~---~~~~~~~~~~---------------------- 78 (296)
T 3k31_A 27 LMEGKKGVIIGVANDKSLAWGIAKAVCAQG---AEVALTYLSETF---KKRVDPLAES---------------------- 78 (296)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHHTT---CEEEEEESSGGG---HHHHHHHHHH----------------------
T ss_pred ccCCCEEEEEeCCCCCCHHHHHHHHHHHCC---CEEEEEeCChHH---HHHHHHHHHh----------------------
Confidence 36789999999998 99999999999999 889999998532 2222222111
Q ss_pred cccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh---------
Q psy17528 123 HRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF--------- 186 (366)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~--------- 186 (366)
...+.++.+|+++.+ .+..+++ ++|++|||||....
T Consensus 79 ----------------------~~~~~~~~~Dv~d~~------~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~ 130 (296)
T 3k31_A 79 ----------------------LGVKLTVPCDVSDAE------SVDNMFKVLAEEWGSLDFVVHAVAFSDKNELKGRYVD 130 (296)
T ss_dssp ----------------------HTCCEEEECCTTCHH------HHHHHHHHHHHHHSCCSEEEECCCCCCHHHHTSCGGG
T ss_pred ----------------------cCCeEEEEcCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCcccccCChhh
Confidence 023578999999986 6666654 67999999997532
Q ss_pred --hhhHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhh
Q psy17528 187 --DEHIRTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNE 263 (366)
Q Consensus 187 --~~~~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 263 (366)
...+...+++|+.++..+++.+... ....++|++||..++....
T Consensus 131 ~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~~~~~--------------------------------- 177 (296)
T 3k31_A 131 TSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAEKVVP--------------------------------- 177 (296)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTSCCT---------------------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhccCCC---------------------------------
Confidence 2356788999999999999988753 2345899999986542211
Q ss_pred cccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCC
Q psy17528 264 HIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDP 338 (366)
Q Consensus 264 ~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~ 338 (366)
....|+.+|...+.+.+.+. +++.+++++||.|.++..... ..............
T Consensus 178 -----~~~~Y~asKaal~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~-------~~~~~~~~~~~~~~-------- 237 (296)
T 3k31_A 178 -----HYNVMGVCKAALEASVKYLAVDLGKQQIRVNAISAGPVRTLASSGI-------SDFHYILTWNKYNS-------- 237 (296)
T ss_dssp -----TTTHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCCSSCCSC-------HHHHHHHHHHHHHS--------
T ss_pred -----CchhhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEECCCcCchhhcc-------cchHHHHHHHHhcC--------
Confidence 11689999999999987765 689999999999998754321 11111111111111
Q ss_pred CcccCcccHHHHHHHHHHHHHhhh
Q psy17528 339 NISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 339 ~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
....+...+|+|++++.++....
T Consensus 238 -p~~r~~~pedvA~~v~fL~s~~a 260 (296)
T 3k31_A 238 -PLRRNTTLDDVGGAALYLLSDLG 260 (296)
T ss_dssp -TTSSCCCHHHHHHHHHHHHSGGG
T ss_pred -CCCCCCCHHHHHHHHHHHcCCcc
Confidence 12346788999999999887543
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-16 Score=148.62 Aligned_cols=202 Identities=17% Similarity=0.164 Sum_probs=140.8
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
++++++|||||+|+||.+++++|++.| .+|++++|+... .+.+.+.+. ..
T Consensus 5 ~~~k~~lVTGas~GIG~aia~~l~~~G---~~V~~~~r~~~~---~~~~~~~~~--------~~---------------- 54 (250)
T 3nyw_A 5 KQKGLAIITGASQGIGAVIAAGLATDG---YRVVLIARSKQN---LEKVHDEIM--------RS---------------- 54 (250)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHHT---CEEEEEESCHHH---HHHHHHHHH--------HH----------------
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEECCHHH---HHHHHHHHH--------Hh----------------
Confidence 568999999999999999999999999 899999997432 112211111 10
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC------hhhhHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR------FDEHIRT 192 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~------~~~~~~~ 192 (366)
. ....++.++.+|+++.+ .+..+++ .+|++|||||... ....++.
T Consensus 55 ---------------~-~~~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~ 112 (250)
T 3nyw_A 55 ---------------N-KHVQEPIVLPLDITDCT------KADTEIKDIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRK 112 (250)
T ss_dssp ---------------C-TTSCCCEEEECCTTCHH------HHHHHHHHHHHHHCCEEEEEECCCCCCCCCCSCHHHHHHH
T ss_pred ---------------c-cccCcceEEeccCCCHH------HHHHHHHHHHHhcCCCCEEEECCCcCCCCCCCCCHHHHHH
Confidence 0 01146789999999976 5665554 6899999999742 1245678
Q ss_pred HHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCC
Q psy17528 193 AYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGK 269 (366)
Q Consensus 193 ~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (366)
.+++|+.++..+.+++.+. .+..++|++||........ +
T Consensus 113 ~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------~----------------------------- 154 (250)
T 3nyw_A 113 IMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYGFA---------D----------------------------- 154 (250)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC-------C---------C-----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEccHHhcCCCC---------C-----------------------------
Confidence 8999999999888876431 2456999999986542110 0
Q ss_pred CchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCc
Q psy17528 270 PNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDV 344 (366)
Q Consensus 270 ~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~ 344 (366)
...|+.+|...+.+.+... ++++++.++||.|.++.. .... .......+
T Consensus 155 ~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~-----------------~~~~---------~~~~~~~~ 208 (250)
T 3nyw_A 155 GGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTDMA-----------------KKAG---------TPFKDEEM 208 (250)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHHH-----------------HHTT---------CCSCGGGS
T ss_pred CcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCchh-----------------hhcC---------CCcccccC
Confidence 1689999999998887765 589999999999876421 1111 01123458
Q ss_pred ccHHHHHHHHHHHHHhhhh
Q psy17528 345 VPGDRVINAMAALAWYFLF 363 (366)
Q Consensus 345 v~vdDva~ai~~~~~~~~~ 363 (366)
+..+|+|++++.++..+..
T Consensus 209 ~~p~dva~~v~~l~s~~~~ 227 (250)
T 3nyw_A 209 IQPDDLLNTIRCLLNLSEN 227 (250)
T ss_dssp BCHHHHHHHHHHHHTSCTT
T ss_pred CCHHHHHHHHHHHHcCCCc
Confidence 8999999999999886643
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=9.4e-16 Score=141.89 Aligned_cols=200 Identities=16% Similarity=0.092 Sum_probs=141.1
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||.+++++|++.| ++|++++|+.. ++.+. ...
T Consensus 3 l~~k~vlVTGas~giG~~ia~~l~~~G---~~V~~~~r~~~------~~~~~---------~~~---------------- 48 (245)
T 1uls_A 3 LKDKAVLITGAAHGIGRATLELFAKEG---ARLVACDIEEG------PLREA---------AEA---------------- 48 (245)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHH---------HHT----------------
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHH---------HHH----------------
Confidence 568999999999999999999999999 89999999742 11111 010
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~ 191 (366)
. .+.++.+|+++.+ .+..+++ ++|++|||||.... ...++
T Consensus 49 ---------------~-----~~~~~~~D~~~~~------~~~~~~~~~~~~~g~id~lvn~Ag~~~~~~~~~~~~~~~~ 102 (245)
T 1uls_A 49 ---------------V-----GAHPVVMDVADPA------SVERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWE 102 (245)
T ss_dssp ---------------T-----TCEEEECCTTCHH------HHHHHHHHHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHH
T ss_pred ---------------c-----CCEEEEecCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHH
Confidence 1 2678899999876 6666554 58999999996431 34567
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
..+++|+.++..+.+.+.+. .+..++|++||.. .... |
T Consensus 103 ~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~-~~~~----------~---------------------------- 143 (245)
T 1uls_A 103 LVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRV-YLGN----------L---------------------------- 143 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGG-GGCC----------T----------------------------
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEccch-hcCC----------C----------------------------
Confidence 88999999999998876542 2567999999976 3111 0
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
....|+.+|...+.+.+... +++++++++||.|.++..... . ........... ....
T Consensus 144 ~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-------~--~~~~~~~~~~~---------p~~~ 205 (245)
T 1uls_A 144 GQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKV-------P--EKVREKAIAAT---------PLGR 205 (245)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSS-------C--HHHHHHHHHTC---------TTCS
T ss_pred CchhHHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCcCcchhhc-------C--HHHHHHHHhhC---------CCCC
Confidence 01679999999888887654 689999999999987643211 1 11111111111 1123
Q ss_pred cccHHHHHHHHHHHHHhhh
Q psy17528 344 VVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~~~ 362 (366)
++..+|+|++++.++....
T Consensus 206 ~~~~~dvA~~v~~l~s~~~ 224 (245)
T 1uls_A 206 AGKPLEVAYAALFLLSDES 224 (245)
T ss_dssp CBCHHHHHHHHHHHHSGGG
T ss_pred CcCHHHHHHHHHHHhCchh
Confidence 7899999999999887543
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-16 Score=148.56 Aligned_cols=204 Identities=17% Similarity=0.145 Sum_probs=142.7
Q ss_pred cccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccc
Q psy17528 41 PIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIG 120 (366)
Q Consensus 41 ~~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (366)
+....+++|+++||||+|+||.+++++|++.| .+|++++|+... .+.+.+.+. ..
T Consensus 5 ~~~~~l~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~---~~~~~~~~~--------~~----------- 59 (252)
T 3f1l_A 5 PKQDLLNDRIILVTGASDGIGREAAMTYARYG---ATVILLGRNEEK---LRQVASHIN--------EE----------- 59 (252)
T ss_dssp CCTTTTTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHHHH--------HH-----------
T ss_pred CcccccCCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHHHH--------hh-----------
Confidence 33456789999999999999999999999999 899999997432 111111111 10
Q ss_pred cccccccccchhhhhhccccCCCCCCcEEEEeccC--CcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC------
Q psy17528 121 ITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQL--EADTFGLSARDEELLIS-------QTTIIFHIAATVR------ 185 (366)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl--~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~------ 185 (366)
...++.++.+|+ ++.+ .+.++++ .+|++|||||...
T Consensus 60 -----------------------~~~~~~~~~~D~~~~~~~------~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~ 110 (252)
T 3f1l_A 60 -----------------------TGRQPQWFILDLLTCTSE------NCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMS 110 (252)
T ss_dssp -----------------------HSCCCEEEECCTTTCCHH------HHHHHHHHHHHHCSCCSEEEECCCCCCCCSCTT
T ss_pred -----------------------cCCCceEEEEecccCCHH------HHHHHHHHHHHhCCCCCEEEECCccCCCCCCcc
Confidence 013678899999 6654 5555554 6899999999742
Q ss_pred --hhhhHHHHHHHHHHHHHHHHHHHHh---cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHh
Q psy17528 186 --FDEHIRTAYNINVKGTQTILALAKR---MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIAL 260 (366)
Q Consensus 186 --~~~~~~~~~~~nv~~~~~ll~~a~~---~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~ 260 (366)
....++..+++|+.++..+.+++.+ ..+..++|++||...+....
T Consensus 111 ~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~------------------------------ 160 (252)
T 3f1l_A 111 EQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRA------------------------------ 160 (252)
T ss_dssp TCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGTSCCT------------------------------
T ss_pred cCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCEEEEECChhhccCCC------------------------------
Confidence 1345678899999999999887742 12567999999986542210
Q ss_pred hhhcccCCCCchHHHHHHHHHHHHHHhc----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecC
Q psy17528 261 LNEHIIGGKPNSYTLTKATAEDLVRQVG----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQT 336 (366)
Q Consensus 261 ~~~~~~~~~~~~Y~~sK~~~E~~l~~~~----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~ 336 (366)
....|+.+|...+.+.+.+. ..+.++.+.||.|..+. .......
T Consensus 161 --------~~~~Y~asK~a~~~l~~~la~e~~~~irvn~v~PG~v~t~~-----------------~~~~~~~------- 208 (252)
T 3f1l_A 161 --------NWGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTAM-----------------RASAFPT------- 208 (252)
T ss_dssp --------TCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECCSBSSHH-----------------HHHHCTT-------
T ss_pred --------CCchhHHHHHHHHHHHHHHHHHhcCCcEEEEEecCcccCch-----------------hhhhCCc-------
Confidence 11689999999999887766 34889999999887531 1111111
Q ss_pred CCCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 337 DPNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 337 ~~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
.....+...+|+|+++++++....
T Consensus 209 --~~~~~~~~p~dva~~~~~L~s~~~ 232 (252)
T 3f1l_A 209 --EDPQKLKTPADIMPLYLWLMGDDS 232 (252)
T ss_dssp --CCGGGSBCTGGGHHHHHHHHSGGG
T ss_pred --cchhccCCHHHHHHHHHHHcCccc
Confidence 112346788999999999887654
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.5e-17 Score=152.65 Aligned_cols=221 Identities=12% Similarity=0.135 Sum_probs=145.4
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|++|||||+|+||.+++++|++.| ++|++++|+... .+...+ .+...
T Consensus 8 l~~k~~lVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~---~~~~~~--------~l~~~---------------- 57 (267)
T 3t4x_A 8 LKGKTALVTGSTAGIGKAIATSLVAEG---ANVLINGRREEN---VNETIK--------EIRAQ---------------- 57 (267)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSHHH---HHHHHH--------HHHHH----------------
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHH--------HHHhh----------------
Confidence 568999999999999999999999999 899999997432 111111 11111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh---CcCEEEEcCcccCh-------hhhHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS---QTTIIFHIAATVRF-------DEHIRTAYN 195 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~---~~d~Vih~a~~~~~-------~~~~~~~~~ 195 (366)
. ....+.++.+|+.+.+ .+.++++ ++|++|||||.... ...++..++
T Consensus 58 ---------------~--~~~~~~~~~~D~~~~~------~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~ 114 (267)
T 3t4x_A 58 ---------------Y--PDAILQPVVADLGTEQ------GCQDVIEKYPKVDILINNLGIFEPVEYFDIPDEDWFKLFE 114 (267)
T ss_dssp ---------------C--TTCEEEEEECCTTSHH------HHHHHHHHCCCCSEEEECCCCCCCCCGGGSCHHHHHHHHH
T ss_pred ---------------C--CCceEEEEecCCCCHH------HHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHH
Confidence 1 1246778899999876 6666665 78999999997531 345677899
Q ss_pred HHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCch
Q psy17528 196 INVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNS 272 (366)
Q Consensus 196 ~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (366)
+|+.++..+.+.+.+. .+..++|++||..++.... ....
T Consensus 115 vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------------------------------------~~~~ 156 (267)
T 3t4x_A 115 VNIMSGVRLTRSYLKKMIERKEGRVIFIASEAAIMPSQ--------------------------------------EMAH 156 (267)
T ss_dssp HHTHHHHHHHHHHHHHHHHTTEEEEEEECCGGGTSCCT--------------------------------------TCHH
T ss_pred HHhHHHHHHHHHHHHHHHhCCCCEEEEEcchhhccCCC--------------------------------------cchH
Confidence 9999977776655331 2567999999987652211 1268
Q ss_pred HHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCC-ccccc-cchHHHHHHHHhcCcceeecCCCCcccCcc
Q psy17528 273 YTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMP-LWIKG-FNGVMALALGAGTGLIRVVQTDPNISMDVV 345 (366)
Q Consensus 273 Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~-~~~~~-~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v 345 (366)
|+.+|...+.+.+.+. +++.++.++||.|.++...... ..... .............. .........+.
T Consensus 157 Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~r~~ 231 (267)
T 3t4x_A 157 YSATKTMQLSLSRSLAELTTGTNVTVNTIMPGSTLTEGVETMLNSLYPNEQLTIEEAEKRFMKE-----NRPTSIIQRLI 231 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECCBCCHHHHHHHHHSSTTSCCCHHHHHHHHHHH-----HCTTCSSCSCB
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeecCccHHHHHhhcCcccCCCHHHHHHHHhhc-----cCCcccccCcc
Confidence 9999999999987766 5799999999999875211000 00000 00001111111110 00112245689
Q ss_pred cHHHHHHHHHHHHHhhh
Q psy17528 346 PGDRVINAMAALAWYFL 362 (366)
Q Consensus 346 ~vdDva~ai~~~~~~~~ 362 (366)
+.+|+|++++.++....
T Consensus 232 ~pedvA~~v~fL~s~~~ 248 (267)
T 3t4x_A 232 RPEEIAHLVTFLSSPLS 248 (267)
T ss_dssp CTHHHHHHHHHHHSGGG
T ss_pred CHHHHHHHHHHHcCccc
Confidence 99999999999887543
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-16 Score=145.86 Aligned_cols=198 Identities=15% Similarity=0.119 Sum_probs=138.0
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+|+++||||+|+||.+++++|++.| ++|++++|+... ..+ .
T Consensus 2 ~k~vlVTGas~giG~~~a~~l~~~G---~~V~~~~r~~~~------~~~------------~------------------ 42 (239)
T 2ekp_A 2 ERKALVTGGSRGIGRAIAEALVARG---YRVAIASRNPEE------AAQ------------S------------------ 42 (239)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSCHH------HHH------------H------------------
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCHHH------HHH------------h------------------
Confidence 5799999999999999999999998 899999997531 100 0
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH-------hCcCEEEEcCcccC-------hhhhHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI-------SQTTIIFHIAATVR-------FDEHIRTA 193 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~-------~~~d~Vih~a~~~~-------~~~~~~~~ 193 (366)
. .+.++.+|+++ + ++..++ .++|++|||||... ....++..
T Consensus 43 -------------~-----~~~~~~~D~~~-~------~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~ 97 (239)
T 2ekp_A 43 -------------L-----GAVPLPTDLEK-D------DPKGLVKRALEALGGLHVLVHAAAVNVRKPALELSYEEWRRV 97 (239)
T ss_dssp -------------H-----TCEEEECCTTT-S------CHHHHHHHHHHHHTSCCEEEECCCCCCCCCTTTCCHHHHHHH
T ss_pred -------------h-----CcEEEecCCch-H------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHH
Confidence 0 15678899998 5 333332 37899999999642 23456788
Q ss_pred HHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCC
Q psy17528 194 YNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKP 270 (366)
Q Consensus 194 ~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (366)
+++|+.++..+.+.+.+. .+.+++|++||..++.... +++ .
T Consensus 98 ~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------~~~-----------------------------~ 141 (239)
T 2ekp_A 98 LYLHLDVAFLLAQAAAPHMAEAGWGRVLFIGSVTTFTAGG-------PVP-----------------------------I 141 (239)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT-------TSC-----------------------------C
T ss_pred HHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhccCCC-------CCC-----------------------------C
Confidence 999999998888876421 2567999999987653220 011 1
Q ss_pred chHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcc
Q psy17528 271 NSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVV 345 (366)
Q Consensus 271 ~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v 345 (366)
..|+.+|...+.+.+.+. ++++++++|||.|.++.... .............. .....+.
T Consensus 142 ~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-------~~~~~~~~~~~~~~---------~p~~~~~ 205 (239)
T 2ekp_A 142 PAYTTAKTALLGLTRALAKEWARLGIRVNLLCPGYVETEFTLP-------LRQNPELYEPITAR---------IPMGRWA 205 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHH-------HHTCHHHHHHHHTT---------CTTSSCB
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCccCchhhc-------cccCHHHHHHHHhc---------CCCCCCc
Confidence 689999999999887765 58999999999998764210 00001111111111 1123478
Q ss_pred cHHHHHHHHHHHHHhh
Q psy17528 346 PGDRVINAMAALAWYF 361 (366)
Q Consensus 346 ~vdDva~ai~~~~~~~ 361 (366)
..+|+|++++.++...
T Consensus 206 ~~~dvA~~~~~l~s~~ 221 (239)
T 2ekp_A 206 RPEEIARVAAVLCGDE 221 (239)
T ss_dssp CHHHHHHHHHHHTSGG
T ss_pred CHHHHHHHHHHHcCch
Confidence 9999999999988654
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=3.4e-17 Score=153.08 Aligned_cols=218 Identities=11% Similarity=0.049 Sum_probs=141.3
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||.+++++|++.| ++|++++|+... .+...+ .+..
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~---~~~~~~--------~l~~----------------- 53 (267)
T 2gdz_A 5 VNGKVALVTGAAQGIGRAFAEALLLKG---AKVALVDWNLEA---GVQCKA--------ALHE----------------- 53 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHH--------HHTT-----------------
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCC---CEEEEEECCHHH---HHHHHH--------HHHh-----------------
Confidence 467899999999999999999999999 899999997421 111111 1100
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccChhhhHHHHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRFDEHIRTAYNINV 198 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~~~~~~~~~~~nv 198 (366)
.....++.++.+|+++.+ .+..+++ .+|+||||||... ...++..+++|+
T Consensus 54 ----------------~~~~~~~~~~~~D~~~~~------~v~~~~~~~~~~~g~id~lv~~Ag~~~-~~~~~~~~~~n~ 110 (267)
T 2gdz_A 54 ----------------QFEPQKTLFIQCDVADQQ------QLRDTFRKVVDHFGRLDILVNNAGVNN-EKNWEKTLQINL 110 (267)
T ss_dssp ----------------TSCGGGEEEEECCTTSHH------HHHHHHHHHHHHHSCCCEEEECCCCCC-SSSHHHHHHHHT
T ss_pred ----------------hcCCCceEEEecCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCC-hhhHHHHHhHHH
Confidence 001246888999999976 6666654 4799999999754 456777889998
Q ss_pred HHHHHHHHHH----HhcC--CCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCch
Q psy17528 199 KGTQTILALA----KRMK--GLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNS 272 (366)
Q Consensus 199 ~~~~~ll~~a----~~~~--~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (366)
.++..+.+.+ .+.+ ...+||++||..++.... ....
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------------------------------------~~~~ 152 (267)
T 2gdz_A 111 VSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVA--------------------------------------QQPV 152 (267)
T ss_dssp HHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCT--------------------------------------TCHH
T ss_pred HHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccCCCC--------------------------------------CCch
Confidence 8766555543 3321 257899999987653211 0157
Q ss_pred HHHHHHHHHHHHHHh------c-CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcc
Q psy17528 273 YTLTKATAEDLVRQV------G-HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVV 345 (366)
Q Consensus 273 Y~~sK~~~E~~l~~~------~-~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v 345 (366)
|+.+|...+.+.+.+ . .++++++++||.|.++.... +.... .... .......+. .+.....++
T Consensus 153 Y~~sK~a~~~~~~~~ala~e~~~~gi~v~~v~Pg~v~t~~~~~-------~~~~~-~~~~-~~~~~~~~~-~~~~~~~~~ 222 (267)
T 2gdz_A 153 YCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILES-------IEKEE-NMGQ-YIEYKDHIK-DMIKYYGIL 222 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHG-------GGCHH-HHGG-GGGGHHHHH-HHHHHHCCB
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcEEEEEecCcCcchhhhc-------ccccc-ccch-hhhHHHHHH-HHhccccCC
Confidence 999999999988752 2 68999999999998753210 00000 0000 000000000 000123578
Q ss_pred cHHHHHHHHHHHHHhhhhcC
Q psy17528 346 PGDRVINAMAALAWYFLFSC 365 (366)
Q Consensus 346 ~vdDva~ai~~~~~~~~~~~ 365 (366)
+.+|+|++++.++.....+|
T Consensus 223 ~~~dvA~~v~~l~s~~~~~G 242 (267)
T 2gdz_A 223 DPPLIANGLITLIEDDALNG 242 (267)
T ss_dssp CHHHHHHHHHHHHHCTTCSS
T ss_pred CHHHHHHHHHHHhcCcCCCC
Confidence 99999999999987654433
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-16 Score=147.51 Aligned_cols=182 Identities=12% Similarity=0.081 Sum_probs=136.8
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+|+|+||||+|+||.+++++|++.| .+|++++|+....
T Consensus 22 ~k~vlITGas~gIG~~la~~l~~~G---~~V~~~~r~~~~~--------------------------------------- 59 (251)
T 3orf_A 22 SKNILVLGGSGALGAEVVKFFKSKS---WNTISIDFRENPN--------------------------------------- 59 (251)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSCCTT---------------------------------------
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCcccc---------------------------------------
Confidence 6899999999999999999999999 8899999986431
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC--------hhhhHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR--------FDEHIRT 192 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~--------~~~~~~~ 192 (366)
.-..+.+|+++.+ ++..+++ .+|+||||||... ....++.
T Consensus 60 -------------------~~~~~~~d~~d~~------~v~~~~~~~~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~ 114 (251)
T 3orf_A 60 -------------------ADHSFTIKDSGEE------EIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKG 114 (251)
T ss_dssp -------------------SSEEEECSCSSHH------HHHHHHHHHHTTTCCEEEEEECCCCCCCBCTTSTTHHHHHHH
T ss_pred -------------------cccceEEEeCCHH------HHHHHHHHHHHHcCCCCEEEECCccCCCCCcccccCHHHHHH
Confidence 1124677888765 6666554 4699999999632 2345677
Q ss_pred HHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCc
Q psy17528 193 AYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPN 271 (366)
Q Consensus 193 ~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (366)
.+++|+.++..+++++.+. ....+||++||..++.... ...
T Consensus 115 ~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~--------------------------------------~~~ 156 (251)
T 3orf_A 115 MIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALNRTS--------------------------------------GMI 156 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCT--------------------------------------TBH
T ss_pred HHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhccCCC--------------------------------------CCc
Confidence 8999999999999988753 1224899999987652211 116
Q ss_pred hHHHHHHHHHHHHHHhc-------CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCc
Q psy17528 272 SYTLTKATAEDLVRQVG-------HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDV 344 (366)
Q Consensus 272 ~Y~~sK~~~E~~l~~~~-------~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~ 344 (366)
.|+.+|...+.+++.+. +++++++++||.|.++.. .... .......+
T Consensus 157 ~Y~~sKaa~~~~~~~la~e~~~~~~gi~v~~v~PG~v~t~~~-----------------~~~~---------~~~~~~~~ 210 (251)
T 3orf_A 157 AYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTPTN-----------------RKYM---------SDANFDDW 210 (251)
T ss_dssp HHHHHHHHHHHHHHHHTSTTSSSCTTCEEEEEEESCBCCHHH-----------------HHHC---------TTSCGGGS
T ss_pred hhHHHHHHHHHHHHHHHHHhcccCCCcEEEEEecCcCcCcch-----------------hhhc---------cccccccc
Confidence 89999999999998765 368999999999876421 1111 11234568
Q ss_pred ccHHHHHHHHHHHHHh
Q psy17528 345 VPGDRVINAMAALAWY 360 (366)
Q Consensus 345 v~vdDva~ai~~~~~~ 360 (366)
++.+|+|++++.++..
T Consensus 211 ~~~~dva~~i~~l~~~ 226 (251)
T 3orf_A 211 TPLSEVAEKLFEWSTN 226 (251)
T ss_dssp BCHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhcC
Confidence 8999999999999987
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=99.71 E-value=2.8e-16 Score=148.36 Aligned_cols=199 Identities=15% Similarity=0.169 Sum_probs=138.6
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++++|+||||+|+||.+++++|++.| ++|++++|+... .+.+.+. +...
T Consensus 25 ~~~~k~vlITGasggIG~~la~~l~~~G---~~V~~~~r~~~~---~~~~~~~--------~~~~--------------- 75 (286)
T 1xu9_A 25 MLQGKKVIVTGASKGIGREMAYHLAKMG---AHVVVTARSKET---LQKVVSH--------CLEL--------------- 75 (286)
T ss_dssp GGTTCEEEESSCSSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHH--------HHHH---------------
T ss_pred hcCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEECCHHH---HHHHHHH--------HHHh---------------
Confidence 4678999999999999999999999998 889999997431 1111111 1110
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEc-CcccC------hhhhH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHI-AATVR------FDEHI 190 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~-a~~~~------~~~~~ 190 (366)
...++.++.+|+++.+ .+.++++ ++|+|||| ||... ....+
T Consensus 76 -------------------~~~~~~~~~~Dl~d~~------~v~~~~~~~~~~~g~iD~li~naag~~~~~~~~~~~~~~ 130 (286)
T 1xu9_A 76 -------------------GAASAHYIAGTMEDMT------FAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHV 130 (286)
T ss_dssp -------------------TCSEEEEEECCTTCHH------HHHHHHHHHHHHHTSCSEEEECCCCCCCCCCCCSCHHHH
T ss_pred -------------------CCCceEEEeCCCCCHH------HHHHHHHHHHHHcCCCCEEEECCccCCCCccccCCHHHH
Confidence 0136889999999876 5655554 78999999 56532 13455
Q ss_pred HHHHHHHHHHHHHHHHHHHhc--CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 191 RTAYNINVKGTQTILALAKRM--KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~--~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
+..+++|+.++..+++++.+. .+.++||++||..++....
T Consensus 131 ~~~~~vN~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~-------------------------------------- 172 (286)
T 1xu9_A 131 RKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYP-------------------------------------- 172 (286)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTSCCT--------------------------------------
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHCCCEEEEECCcccccCCC--------------------------------------
Confidence 778999999999888876432 1235999999986542210
Q ss_pred CCchHHHHHHHHHHHHHHhc-------CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcc
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-------HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNIS 341 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-------~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~ 341 (366)
....|+.+|...+.+++.+. .++.+++++||.|.++.. .....+ ...
T Consensus 173 ~~~~Y~asK~a~~~~~~~l~~e~~~~~~~i~v~~v~Pg~v~t~~~-----------------~~~~~~---------~~~ 226 (286)
T 1xu9_A 173 MVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETA-----------------MKAVSG---------IVH 226 (286)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHHH-----------------HHHSCG---------GGG
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeecCccCChhH-----------------HHhccc---------ccc
Confidence 11689999999998886543 489999999999876421 011111 112
Q ss_pred cCcccHHHHHHHHHHHHHhh
Q psy17528 342 MDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 342 ~~~v~vdDva~ai~~~~~~~ 361 (366)
..+++.+|+|++++.++..+
T Consensus 227 ~~~~~~~~vA~~i~~~~~~~ 246 (286)
T 1xu9_A 227 MQAAPKEECALEIIKGGALR 246 (286)
T ss_dssp GGCBCHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHhcC
Confidence 35678899999999887654
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.4e-16 Score=148.84 Aligned_cols=211 Identities=17% Similarity=0.106 Sum_probs=145.9
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++|+++||||+|+||.+++++|++.| .+|++++|+..... .+.+.+. .
T Consensus 30 ~l~gk~~lVTGas~GIG~aia~~la~~G---~~V~~~~r~~~~~~---~~~~~~~--------~---------------- 79 (275)
T 4imr_A 30 GLRGRTALVTGSSRGIGAAIAEGLAGAG---AHVILHGVKPGSTA---AVQQRII--------A---------------- 79 (275)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSTTTTH---HHHHHHH--------H----------------
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEcCCHHHHH---HHHHHHH--------h----------------
Confidence 4678999999999999999999999999 89999999865432 1111111 1
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh------CcCEEEEcCcccC-------hhhhHH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
...++.++.+|+++.+ .+..+++ ++|++|||||... ....++
T Consensus 80 -------------------~~~~~~~~~~Dv~~~~------~~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~ 134 (275)
T 4imr_A 80 -------------------SGGTAQELAGDLSEAG------AGTDLIERAEAIAPVDILVINASAQINATLSALTPNDLA 134 (275)
T ss_dssp -------------------TTCCEEEEECCTTSTT------HHHHHHHHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHH
T ss_pred -------------------cCCeEEEEEecCCCHH------HHHHHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHH
Confidence 1357889999999987 6666554 6899999999642 234567
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
..+++|+.++..+++++.+. .+..++|++||...+....
T Consensus 135 ~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~~-------------------------------------- 176 (275)
T 4imr_A 135 FQLAVNLGSTVDMLQSALPKMVARKWGRVVSIGSINQLRPKS-------------------------------------- 176 (275)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT--------------------------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCCCCC--------------------------------------
Confidence 78999999999988876431 2456999999986553110
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
....|+.+|...+.+.+... +++.+++++||.|.++..... ............... ....-
T Consensus 177 ~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~------~~~~~~~~~~~~~~~--------~p~~r 242 (275)
T 4imr_A 177 VVTAYAATKAAQHNLIQSQARDFAGDNVLLNTLAPGLVDTDRNADR------RAQDPEGWDEYVRTL--------NWMGR 242 (275)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHHHHHH------HHHCHHHHHHHHHHH--------STTCS
T ss_pred CchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEEeccccCcccccc------cccChHHHHHHHhhc--------CccCC
Confidence 01569999999999887765 589999999999987532100 000001111111100 01223
Q ss_pred cccHHHHHHHHHHHHHhhh
Q psy17528 344 VVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~~~ 362 (366)
+...+|+|++++.++...+
T Consensus 243 ~~~pedvA~~v~fL~s~~a 261 (275)
T 4imr_A 243 AGRPEEMVGAALFLASEAC 261 (275)
T ss_dssp CBCGGGGHHHHHHHHSGGG
T ss_pred CcCHHHHHHHHHHHcCccc
Confidence 6678999999999887654
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3e-16 Score=146.92 Aligned_cols=219 Identities=11% Similarity=0.006 Sum_probs=145.5
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
++++++|||||+|+||.+++++|++.| .+|++++|+... .+.+.+. +...
T Consensus 6 l~~k~~lVTGas~GIG~aia~~l~~~G---~~V~~~~r~~~~---~~~~~~~--------l~~~---------------- 55 (265)
T 3lf2_A 6 LSEAVAVVTGGSSGIGLATVELLLEAG---AAVAFCARDGER---LRAAESA--------LRQR---------------- 55 (265)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHH--------HHHH----------------
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHH--------HHHh----------------
Confidence 568999999999999999999999999 889999997432 1111111 1110
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~~~ 191 (366)
. ...++.++.+|+++.+ .+..+++ .+|++|||||.... ...++
T Consensus 56 ---------------~--~~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~ 112 (265)
T 3lf2_A 56 ---------------F--PGARLFASVCDVLDAL------QVRAFAEACERTLGCASILVNNAGQGRVSTFAETTDEAWS 112 (265)
T ss_dssp ---------------S--TTCCEEEEECCTTCHH------HHHHHHHHHHHHHCSCSEEEECCCCCCCBCTTTCCHHHHH
T ss_pred ---------------c--CCceEEEEeCCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHH
Confidence 0 1235889999999976 5665553 68999999997432 34567
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
..+++|+.++..+.+.+.+. .+..+||++||...+....
T Consensus 113 ~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------------------------------------- 154 (265)
T 3lf2_A 113 EELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQPEP-------------------------------------- 154 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEGGGTSCCT--------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCcccCCCCC--------------------------------------
Confidence 88999999999998877542 2456899999986542211
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCcccc-ccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIK-GFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
....|+.+|...+.+.+... +|+++++++||.|.++.......... .......+....... ......
T Consensus 155 ~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~p~~ 227 (265)
T 3lf2_A 155 HMVATSAARAGVKNLVRSMAFEFAPKGVRVNGILIGLVESGQWRRRFEAREERELDWAQWTAQLARN-------KQIPLG 227 (265)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHTC------CHHHHHHHHHHH-------TTCTTC
T ss_pred CchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCcCchhhhhhhhhhhhccCHHHHHHHHhhc-------cCCCcC
Confidence 11689999999999887765 68999999999998753210000000 000000111111100 001234
Q ss_pred CcccHHHHHHHHHHHHHhhh
Q psy17528 343 DVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~~ 362 (366)
.+...+|+|++++.++....
T Consensus 228 r~~~pedvA~~v~fL~s~~~ 247 (265)
T 3lf2_A 228 RLGKPIEAARAILFLASPLS 247 (265)
T ss_dssp SCBCHHHHHHHHHHHHSGGG
T ss_pred CCcCHHHHHHHHHHHhCchh
Confidence 57889999999999886543
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.3e-16 Score=144.32 Aligned_cols=209 Identities=16% Similarity=0.172 Sum_probs=141.8
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+|+++||||+|+||.+++++|++.|.. ..|++..|+... .+.+.+.+
T Consensus 2 gk~~lVTGas~GIG~aia~~l~~~g~~-~~v~~~~r~~~~---~~~~~~~~----------------------------- 48 (254)
T 3kzv_A 2 GKVILVTGVSRGIGKSIVDVLFSLDKD-TVVYGVARSEAP---LKKLKEKY----------------------------- 48 (254)
T ss_dssp CCEEEECSTTSHHHHHHHHHHHHHCSS-CEEEEEESCHHH---HHHHHHHH-----------------------------
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCC-eEEEEecCCHHH---HHHHHHHh-----------------------------
Confidence 589999999999999999999998622 678888886421 11111110
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC--------hhhhHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR--------FDEHIRT 192 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~--------~~~~~~~ 192 (366)
..++.++.+|+++.+ .+..+++ ++|++|||||... ....++.
T Consensus 49 -----------------~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~ 105 (254)
T 3kzv_A 49 -----------------GDRFFYVVGDITEDS------VLKQLVNAAVKGHGKIDSLVANAGVLEPVQNVNEIDVNAWKK 105 (254)
T ss_dssp -----------------GGGEEEEESCTTSHH------HHHHHHHHHHHHHSCCCEEEEECCCCCCCTTTTSCCHHHHHH
T ss_pred -----------------CCceEEEECCCCCHH------HHHHHHHHHHHhcCCccEEEECCcccCCCCCcccCCHHHHHH
Confidence 246789999999986 6666654 6899999999742 1245678
Q ss_pred HHHHHHHHHHHHHHHH----HhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 193 AYNINVKGTQTILALA----KRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 193 ~~~~nv~~~~~ll~~a----~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
.+++|+.++..+.+.+ ++. + .++|++||..++....
T Consensus 106 ~~~~N~~g~~~~~~~~~~~m~~~-~-g~iv~isS~~~~~~~~-------------------------------------- 145 (254)
T 3kzv_A 106 LYDINFFSIVSLVGIALPELKKT-N-GNVVFVSSDACNMYFS-------------------------------------- 145 (254)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHH-T-CEEEEECCSCCCCSSC--------------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHHHHhc-C-CeEEEEcCchhccCCC--------------------------------------
Confidence 8999999999998877 333 3 6999999987653211
Q ss_pred CCchHHHHHHHHHHHHHHhc---CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcc
Q psy17528 269 KPNSYTLTKATAEDLVRQVG---HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVV 345 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~---~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v 345 (366)
....|+.+|...+.+.+.+. ++++++.++||.|.++......................... .....+.
T Consensus 146 ~~~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~r~~ 216 (254)
T 3kzv_A 146 SWGAYGSSKAALNHFAMTLANEERQVKAIAVAPGIVDTDMQVNIRENVGPSSMSAEQLKMFRGL---------KENNQLL 216 (254)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCCCCSCCCCCCCCTTTSCHHHHHHHHHH---------HTTC---
T ss_pred CcchHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcccchhHHHhhcccCccccCHHHHHHHHHH---------HhcCCcC
Confidence 11689999999999998776 68999999999999886543221110000001111111111 1123578
Q ss_pred cHHHHHHHHHHHHHhh
Q psy17528 346 PGDRVINAMAALAWYF 361 (366)
Q Consensus 346 ~vdDva~ai~~~~~~~ 361 (366)
..+|+|++++.++...
T Consensus 217 ~p~dva~~v~~L~s~~ 232 (254)
T 3kzv_A 217 DSSVPATVYAKLALHG 232 (254)
T ss_dssp -CHHHHHHHHHHHHHC
T ss_pred CcccHHHHHHHHHhhc
Confidence 8999999999988765
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.71 E-value=7.2e-16 Score=145.40 Aligned_cols=205 Identities=15% Similarity=0.107 Sum_probs=136.6
Q ss_pred cccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccc
Q psy17528 43 QEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGIT 122 (366)
Q Consensus 43 ~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (366)
...|+ +++|||||+|+||.+++++|++.| .+|++++|+... .+.+.+. +
T Consensus 17 ~~~~~-k~vlVTGas~gIG~aia~~La~~G---~~V~~~~r~~~~---~~~~~~~--------~---------------- 65 (272)
T 2nwq_A 17 GSHMS-STLFITGATSGFGEACARRFAEAG---WSLVLTGRREER---LQALAGE--------L---------------- 65 (272)
T ss_dssp ----C-CEEEESSTTTSSHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHH--------H----------------
T ss_pred CCCcC-cEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHH---HHHHHHH--------h----------------
Confidence 34455 899999999999999999999999 899999997421 1111111 0
Q ss_pred cccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhC-------cCEEEEcCcccCh--------h
Q psy17528 123 HRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQ-------TTIIFHIAATVRF--------D 187 (366)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~-------~d~Vih~a~~~~~--------~ 187 (366)
.. . .++.++.+|+++.+ .+..+++. +|++|||||.... .
T Consensus 66 ------------------~~-~-~~~~~~~~Dv~d~~------~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~ 119 (272)
T 2nwq_A 66 ------------------SA-K-TRVLPLTLDVRDRA------AMSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDL 119 (272)
T ss_dssp ------------------TT-T-SCEEEEECCTTCHH------HHHHHHHTCCGGGSSCCEEEECCCCCCCCCCGGGCCH
T ss_pred ------------------hc-C-CcEEEEEcCCCCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCCcccCCH
Confidence 00 1 46889999999987 77777764 5999999997431 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH----hcCCCc-EEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhh
Q psy17528 188 EHIRTAYNINVKGTQTILALAK----RMKGLK-SFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLN 262 (366)
Q Consensus 188 ~~~~~~~~~nv~~~~~ll~~a~----~~~~~~-~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 262 (366)
..++..+++|+.++..+.+.+. +. +.. +||++||..++....
T Consensus 120 ~~~~~~~~vN~~g~~~~~~~~~~~m~~~-~~g~~IV~isS~~~~~~~~-------------------------------- 166 (272)
T 2nwq_A 120 DDWDTMVDTNIKGLLYSTRLLLPRLIAH-GAGASIVNLGSVAGKWPYP-------------------------------- 166 (272)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHH-CTTCEEEEECCGGGTSCCT--------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeCCchhccCCC--------------------------------
Confidence 4567789999999887766654 33 456 999999986542210
Q ss_pred hcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCC
Q psy17528 263 EHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTD 337 (366)
Q Consensus 263 ~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~ 337 (366)
....|+.+|...+.+.+... +++++++++||.|.++..... +....... .....
T Consensus 167 ------~~~~Y~asKaa~~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~------~~~~~~~~--------~~~~~- 225 (272)
T 2nwq_A 167 ------GSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESEFSLVR------FGGDQARY--------DKTYA- 225 (272)
T ss_dssp ------TCHHHHHHHHHHHHHHHHHHTTCTTSCCEEEEEEECSBC-----------------------------------
T ss_pred ------CCchHHHHHHHHHHHHHHHHHHhCccCeEEEEEEcCCCcCcchhcc------cccchHHH--------HHhhc-
Confidence 11679999999999987765 589999999999987643210 00000000 00000
Q ss_pred CCcccCcccHHHHHHHHHHHHHhh
Q psy17528 338 PNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 338 ~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
...++..+|+|++++.++..+
T Consensus 226 ---~~~~~~pedvA~~v~~l~s~~ 246 (272)
T 2nwq_A 226 ---GAHPIQPEDIAETIFWIMNQP 246 (272)
T ss_dssp ---CCCCBCHHHHHHHHHHHHTSC
T ss_pred ---cCCCCCHHHHHHHHHHHhCCC
Confidence 112478999999999988754
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.2e-16 Score=145.59 Aligned_cols=199 Identities=16% Similarity=0.136 Sum_probs=136.3
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
|+++||||+|+||.+++++|++.| ++|++++|+... .+.+.+.
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~---~~~~~~~------------------------------- 43 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQG---HKVIATGRRQER---LQELKDE------------------------------- 43 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHH-------------------------------
T ss_pred CEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHH-------------------------------
Confidence 589999999999999999999999 899999997421 1111110
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC--------hhhhHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR--------FDEHIRTA 193 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~--------~~~~~~~~ 193 (366)
. ..++.++.+|+++.+ .+..+++ ++|++|||||... ....++..
T Consensus 44 ------------~---~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~ 102 (248)
T 3asu_A 44 ------------L---GDNLYIAQLDVRNRA------AIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETM 102 (248)
T ss_dssp ------------H---CTTEEEEECCTTCHH------HHHHHHHTSCTTTCCCCEEEECCCCCCCCSCGGGSCHHHHHHH
T ss_pred ------------h---cCceEEEEcCCCCHH------HHHHHHHHHHHhCCCCCEEEECCCcCCCCCchhhCCHHHHHHH
Confidence 0 136788999999977 7777765 5899999999642 12456788
Q ss_pred HHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCC
Q psy17528 194 YNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKP 270 (366)
Q Consensus 194 ~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (366)
+++|+.++..+.+.+.+. .+..+||++||..++.... ..
T Consensus 103 ~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~--------------------------------------~~ 144 (248)
T 3asu_A 103 IDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYA--------------------------------------GG 144 (248)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCT--------------------------------------TC
T ss_pred HHHHhHHHHHHHHHHHHHHHhcCCceEEEEccchhccCCC--------------------------------------CC
Confidence 999999988888776521 1457999999986542210 11
Q ss_pred chHHHHHHHHHHHHHHhc-----CCCCEEEEecCcccc-CCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCc
Q psy17528 271 NSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFP-TLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDV 344 (366)
Q Consensus 271 ~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~ 344 (366)
..|+.+|...+.+.+... +++++++++||.|.| +.... . +....... . ... ....+
T Consensus 145 ~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~gT~~~~~---~---~~~~~~~~----~----~~~----~~~~~ 206 (248)
T 3asu_A 145 NVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNV---R---FKGDDGKA----E----KTY----QNTVA 206 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECSBCC----------------------------------------CC
T ss_pred chHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeccccccCcchhh---c---ccCchHHH----H----HHH----hccCC
Confidence 689999999999987755 589999999999995 32110 0 00000000 0 000 01124
Q ss_pred ccHHHHHHHHHHHHHhh
Q psy17528 345 VPGDRVINAMAALAWYF 361 (366)
Q Consensus 345 v~vdDva~ai~~~~~~~ 361 (366)
+..+|+|++++.++..+
T Consensus 207 ~~p~dvA~~v~~l~s~~ 223 (248)
T 3asu_A 207 LTPEDVSEAVWWVSTLP 223 (248)
T ss_dssp BCHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHhcCC
Confidence 68999999999988764
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-16 Score=146.16 Aligned_cols=187 Identities=10% Similarity=0.028 Sum_probs=136.7
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
.++|+|+||||+|+||.+++++|++.| ++|++++|+....
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~------------------------------------- 44 (241)
T 1dhr_A 5 GEARRVLVYGGRGALGSRCVQAFRARN---WWVASIDVVENEE------------------------------------- 44 (241)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHTTT---CEEEEEESSCCTT-------------------------------------
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCC---CEEEEEeCChhhc-------------------------------------
Confidence 357899999999999999999999998 8999999985421
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh---------CcCEEEEcCcccC--------hhh
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS---------QTTIIFHIAATVR--------FDE 188 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~---------~~d~Vih~a~~~~--------~~~ 188 (366)
.....++.+|+++.+ .+..+++ ++|++|||||... ...
T Consensus 45 -------------------~~~~~~~~~D~~~~~------~v~~~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~ 99 (241)
T 1dhr_A 45 -------------------ASASVIVKMTDSFTE------QADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFK 99 (241)
T ss_dssp -------------------SSEEEECCCCSCHHH------HHHHHHHHHHHHHTTCCEEEEEECCCCCCCBCTTCTTHHH
T ss_pred -------------------cCCcEEEEcCCCCHH------HHHHHHHHHHHHhCCCCCCEEEEcccccCCCCCcccCCHH
Confidence 023467789999876 5655553 6899999999642 124
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 189 HIRTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 189 ~~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
.++..+++|+.++..+.+.+.+. ....+||++||..++....
T Consensus 100 ~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------------------------------- 142 (241)
T 1dhr_A 100 NCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGTP------------------------------------- 142 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCT-------------------------------------
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHHccCCC-------------------------------------
Confidence 45778899999999999987653 1125899999987653210
Q ss_pred CCCchHHHHHHHHHHHHHHhc-------CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-------HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNI 340 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-------~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~ 340 (366)
....|+.+|...+.+.+... +++++++++||.|-.+.. ...... ..
T Consensus 143 -~~~~Y~asK~a~~~~~~~la~e~~~~~~gi~v~~v~PG~v~T~~~-----------------~~~~~~---------~~ 195 (241)
T 1dhr_A 143 -GMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPMN-----------------RKSMPE---------AD 195 (241)
T ss_dssp -TBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHHH-----------------HHHSTT---------SC
T ss_pred -CchHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEecCcccCccc-----------------cccCcc---------hh
Confidence 01679999999999998765 258999999998865411 111100 11
Q ss_pred ccCcccHHHHHHHHHHHHHhh
Q psy17528 341 SMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 341 ~~~~v~vdDva~ai~~~~~~~ 361 (366)
...+++.+|+|++++.++...
T Consensus 196 ~~~~~~~~~vA~~v~~l~~~~ 216 (241)
T 1dhr_A 196 FSSWTPLEFLVETFHDWITGN 216 (241)
T ss_dssp GGGSEEHHHHHHHHHHHHTTT
T ss_pred hccCCCHHHHHHHHHHHhcCC
Confidence 234678899999999988654
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=99.70 E-value=3.6e-16 Score=147.93 Aligned_cols=204 Identities=11% Similarity=0.097 Sum_probs=140.5
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC-CCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR-GSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
+++++++||||+|+||.+++++|++.| .+|++++|+. .. .+.+.+. +...
T Consensus 21 l~~k~~lVTGas~gIG~aia~~L~~~G---~~V~~~~r~~~~~---~~~~~~~--------l~~~--------------- 71 (288)
T 2x9g_A 21 MEAPAAVVTGAAKRIGRAIAVKLHQTG---YRVVIHYHNSAEA---AVSLADE--------LNKE--------------- 71 (288)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHHT---CEEEEEESSCHHH---HHHHHHH--------HHHH---------------
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CeEEEEeCCchHH---HHHHHHH--------HHhh---------------
Confidence 568999999999999999999999999 8999999975 21 1112111 1100
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCc----CCCCCCHHHHHHHHh-------CcCEEEEcCcccC--------
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEA----DTFGLSARDEELLIS-------QTTIIFHIAATVR-------- 185 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~----~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------- 185 (366)
...++.++.+|+++ .+ .+..+++ ++|+||||||...
T Consensus 72 -------------------~~~~~~~~~~Dv~~~~~~~~------~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~ 126 (288)
T 2x9g_A 72 -------------------RSNTAVVCQADLTNSNVLPA------SCEEIINSCFRAFGRCDVLVNNASAFYPTPLVQGD 126 (288)
T ss_dssp -------------------STTCEEEEECCCSCSTTHHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCCC-
T ss_pred -------------------cCCceEEEEeecCCccCCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCcccccc
Confidence 12468899999999 54 5555543 7899999999642
Q ss_pred ---------hhhhHHHHHHHHHHHHHHHHHHHHhc---CC------CcEEEEeeCcceecCccccccccCCCCCChHHHH
Q psy17528 186 ---------FDEHIRTAYNINVKGTQTILALAKRM---KG------LKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELS 247 (366)
Q Consensus 186 ---------~~~~~~~~~~~nv~~~~~ll~~a~~~---~~------~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~ 247 (366)
....++..+++|+.++..+.+.+.+. .+ ..+||++||..++....
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~----------------- 189 (288)
T 2x9g_A 127 HEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNLCDAMVDQPCM----------------- 189 (288)
T ss_dssp -------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCCEEEEEECCTTTTSCCT-----------------
T ss_pred chhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEEecccccCCCC-----------------
Confidence 11245678899999999998876542 12 46899999987652210
Q ss_pred HHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHH
Q psy17528 248 ALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMAL 322 (366)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~ 322 (366)
....|+.+|...+.+.+.+. +++++++++||.|+++. . . . . ..
T Consensus 190 ---------------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~-~-~---~---~---~~ 237 (288)
T 2x9g_A 190 ---------------------AFSLYNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLLPV-A-M---G---E---EE 237 (288)
T ss_dssp ---------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSCSCCT-T-S---C---H---HH
T ss_pred ---------------------CCchHHHHHHHHHHHHHHHHHHhhccCeEEEEEEeccccCcc-c-c---C---h---HH
Confidence 11679999998888887655 58999999999999875 2 1 0 0 01
Q ss_pred HHHHhcCcceeecCCCCcccCc-ccHHHHHHHHHHHHHhh
Q psy17528 323 ALGAGTGLIRVVQTDPNISMDV-VPGDRVINAMAALAWYF 361 (366)
Q Consensus 323 ~~~~~~g~~~~l~~~~~~~~~~-v~vdDva~ai~~~~~~~ 361 (366)
........ ....+ ...+|+|++++.++...
T Consensus 238 ~~~~~~~~---------p~~r~~~~pedvA~~v~~l~s~~ 268 (288)
T 2x9g_A 238 KDKWRRKV---------PLGRREASAEQIADAVIFLVSGS 268 (288)
T ss_dssp HHHHHHTC---------TTTSSCCCHHHHHHHHHHHHSGG
T ss_pred HHHHHhhC---------CCCCCCCCHHHHHHHHHHHhCcc
Confidence 11111111 01224 78999999999988754
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.9e-16 Score=146.63 Aligned_cols=204 Identities=11% Similarity=0.080 Sum_probs=144.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCH----HHHHHHHhhhhhhhhhhhcCCCCCCcccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSI----TQRVYNYFNDAVFDRMRLECPNYADKVDIGI 121 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (366)
+++++++||||+|+||.+++++|++.| .+|++++|+...... .+...+.+. .
T Consensus 7 l~~k~vlVTGas~GIG~aia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~--------~------------- 62 (285)
T 3sc4_A 7 LRGKTMFISGGSRGIGLAIAKRVAADG---ANVALVAKSAEPHPKLPGTIYTAAKEIE--------E------------- 62 (285)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHTTT---CEEEEEESCCSCCSSSCCCHHHHHHHHH--------H-------------
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEECChhhhhhhhHHHHHHHHHHH--------h-------------
Confidence 578999999999999999999999999 899999998653211 111111111 1
Q ss_pred ccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hh
Q psy17528 122 THRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FD 187 (366)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~ 187 (366)
...++.++.+|+++.+ .+.++++ ++|++|||||... ..
T Consensus 63 ----------------------~~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~ 114 (285)
T 3sc4_A 63 ----------------------AGGQALPIVGDIRDGD------AVAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPL 114 (285)
T ss_dssp ----------------------HTSEEEEEECCTTSHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCCCTTTSCH
T ss_pred ----------------------cCCcEEEEECCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCH
Confidence 1357889999999976 6666654 7899999999753 23
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhc
Q psy17528 188 EHIRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEH 264 (366)
Q Consensus 188 ~~~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 264 (366)
..++..+++|+.++..+.+.+.+. .+..++|++||........
T Consensus 115 ~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~---------------------------------- 160 (285)
T 3sc4_A 115 KRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEPKW---------------------------------- 160 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCCCSGGG----------------------------------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhccCCC----------------------------------
Confidence 456778899999999999987653 2456999999976542210
Q ss_pred ccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCC
Q psy17528 265 IIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPN 339 (366)
Q Consensus 265 ~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~ 339 (366)
.....|+.+|...+.+.+... +|+.++.++||.+..+. +....... ..
T Consensus 161 ---~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~v~PG~~v~t~----------------~~~~~~~~--------~~ 213 (285)
T 3sc4_A 161 ---LRPTPYMMAKYGMTLCALGIAEELRDAGIASNTLWPRTTVATA----------------AVQNLLGG--------DE 213 (285)
T ss_dssp ---SCSHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECSSCBCCH----------------HHHHHHTS--------CC
T ss_pred ---CCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeCCCccccH----------------HHHhhccc--------cc
Confidence 011679999999999887765 68999999998433221 11111111 11
Q ss_pred cccCcccHHHHHHHHHHHHHhhh
Q psy17528 340 ISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 340 ~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
....+...+|+|++++.++..+.
T Consensus 214 ~~~r~~~pedvA~~~~~l~s~~~ 236 (285)
T 3sc4_A 214 AMARSRKPEVYADAAYVVLNKPS 236 (285)
T ss_dssp CCTTCBCTHHHHHHHHHHHTSCT
T ss_pred cccCCCCHHHHHHHHHHHhCCcc
Confidence 23356788999999999887654
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.4e-16 Score=143.23 Aligned_cols=208 Identities=14% Similarity=0.118 Sum_probs=143.3
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|+++||||+|+||.+++++|++.| .+|+++.+.... ..+...+. +..
T Consensus 5 l~~k~vlITGas~gIG~~~a~~l~~~G---~~v~~~~~~~~~--~~~~~~~~--------~~~----------------- 54 (255)
T 3icc_A 5 LKGKVALVTGASRGIGRAIAKRLANDG---ALVAIHYGNRKE--EAEETVYE--------IQS----------------- 54 (255)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSCSH--HHHHHHHH--------HHH-----------------
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCC---CeEEEEeCCchH--HHHHHHHH--------HHh-----------------
Confidence 568999999999999999999999998 788886554321 11111111 111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------------CcCEEEEcCcccC-------
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------------QTTIIFHIAATVR------- 185 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------------~~d~Vih~a~~~~------- 185 (366)
...++.++.+|+.+.+ .+..+++ .+|++|||||...
T Consensus 55 ------------------~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~~~~~~~~~id~lv~nAg~~~~~~~~~~ 110 (255)
T 3icc_A 55 ------------------NGGSAFSIGANLESLH------GVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEET 110 (255)
T ss_dssp ------------------TTCEEEEEECCTTSHH------HHHHHHHHHHHHHHHHHSSSCEEEEEECCCCCCCBCGGGC
T ss_pred ------------------cCCceEEEecCcCCHH------HHHHHHHHHHHHhcccccCCcccEEEECCCCCCCCChhhC
Confidence 1357788999999876 5555443 2899999999742
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhc
Q psy17528 186 FDEHIRTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEH 264 (366)
Q Consensus 186 ~~~~~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 264 (366)
....++..+++|+.++..+++.+.+. ....++|++||...+....
T Consensus 111 ~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~---------------------------------- 156 (255)
T 3icc_A 111 TEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRISLP---------------------------------- 156 (255)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGTSCCT----------------------------------
T ss_pred CHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChhhccCCC----------------------------------
Confidence 12355778899999999999988653 1235899999986552211
Q ss_pred ccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCC
Q psy17528 265 IIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPN 339 (366)
Q Consensus 265 ~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~ 339 (366)
....|+.+|...+.+.+... +++.+++++||.|.++....... ...+...... ..
T Consensus 157 ----~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~-------~~~~~~~~~~---------~~ 216 (255)
T 3icc_A 157 ----DFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFVKTDMNAELLS-------DPMMKQYATT---------IS 216 (255)
T ss_dssp ----TBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCSSSTTTTT-------SHHHHHHHHH---------TS
T ss_pred ----CcchhHHhHHHHHHHHHHHHHHHHhcCeEEEEEEEeeecccchhhhcc-------cHHHHHhhhc---------cC
Confidence 11679999999999887665 68999999999998875432111 0111111111 11
Q ss_pred cccCcccHHHHHHHHHHHHHhh
Q psy17528 340 ISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 340 ~~~~~v~vdDva~ai~~~~~~~ 361 (366)
....+...+|+|++++.++...
T Consensus 217 ~~~~~~~~~dva~~~~~l~s~~ 238 (255)
T 3icc_A 217 AFNRLGEVEDIADTAAFLASPD 238 (255)
T ss_dssp TTSSCBCHHHHHHHHHHHHSGG
T ss_pred CcCCCCCHHHHHHHHHHHhCcc
Confidence 2345788999999999988654
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-15 Score=143.30 Aligned_cols=203 Identities=12% Similarity=0.065 Sum_probs=141.3
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCH----HHHHHHHhhhhhhhhhhhcCCCCCCcccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSI----TQRVYNYFNDAVFDRMRLECPNYADKVDIGI 121 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (366)
+++|+++||||+|+||.+++++|++.| .+|++++|+...... .+...+.+. .
T Consensus 4 l~~k~~lVTGas~GIG~aia~~la~~G---~~V~~~~r~~~~~~~~~~~~~~~~~~~~--------~------------- 59 (274)
T 3e03_A 4 LSGKTLFITGASRGIGLAIALRAARDG---ANVAIAAKSAVANPKLPGTIHSAAAAVN--------A------------- 59 (274)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCCSCCTTSCCCHHHHHHHHH--------H-------------
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCC---CEEEEEeccchhhhhhHHHHHHHHHHHH--------h-------------
Confidence 568999999999999999999999999 899999998653210 111111110 0
Q ss_pred ccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hh
Q psy17528 122 THRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FD 187 (366)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~ 187 (366)
...++.++.+|+++.+ .+..+++ ++|++|||||... ..
T Consensus 60 ----------------------~~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~ 111 (274)
T 3e03_A 60 ----------------------AGGQGLALKCDIREED------QVRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPM 111 (274)
T ss_dssp ----------------------HTSEEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGSCH
T ss_pred ----------------------cCCeEEEEeCCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCcccCCCcccCCH
Confidence 1357889999999986 6666554 6899999999742 23
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhc
Q psy17528 188 EHIRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEH 264 (366)
Q Consensus 188 ~~~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 264 (366)
..++..+++|+.++..+.+.+... .+..++|++||...+.... .
T Consensus 112 ~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~---------------------------~------ 158 (274)
T 3e03_A 112 KRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPAW---------------------------W------ 158 (274)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCCCCHHH---------------------------H------
T ss_pred HHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHhcCCCC---------------------------C------
Confidence 456788999999999998876542 2456999999986542210 0
Q ss_pred ccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCC
Q psy17528 265 IIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPN 339 (366)
Q Consensus 265 ~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~ 339 (366)
+....|+.+|...+.+.+... +|+.++.+.||.+..+... .... ..
T Consensus 159 ---~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~~v~T~~~-----------------~~~~---------~~ 209 (274)
T 3e03_A 159 ---GAHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRTVIATDAI-----------------NMLP---------GV 209 (274)
T ss_dssp ---HHCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECSBCBCC---------------------------------CC
T ss_pred ---CCCchHHHHHHHHHHHHHHHHHHhhhcCEEEEEEECCcccccchh-----------------hhcc---------cc
Confidence 001679999999999887765 6899999999954433211 0000 01
Q ss_pred cccCcccHHHHHHHHHHHHHhhh
Q psy17528 340 ISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 340 ~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
....+...+|+|++++.++....
T Consensus 210 ~~~~~~~pedvA~~v~~l~s~~~ 232 (274)
T 3e03_A 210 DAAACRRPEIMADAAHAVLTREA 232 (274)
T ss_dssp CGGGSBCTHHHHHHHHHHHTSCC
T ss_pred cccccCCHHHHHHHHHHHhCccc
Confidence 12236789999999999886543
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-16 Score=147.40 Aligned_cols=202 Identities=14% Similarity=0.105 Sum_probs=122.4
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
++++++|||||+|+||.+++++|++ | .+|++++|+... +.+. .
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~-g---~~v~~~~r~~~~------~~~~---------~------------------ 45 (245)
T 3e9n_A 3 LKKKIAVVTGATGGMGIEIVKDLSR-D---HIVYALGRNPEH------LAAL---------A------------------ 45 (245)
T ss_dssp ---CEEEEESTTSHHHHHHHHHHTT-T---SEEEEEESCHHH------HHHH---------H------------------
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHhC-C---CeEEEEeCCHHH------HHHH---------H------------------
Confidence 4589999999999999999999987 6 789999986421 1110 0
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh-------hhhHHHHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF-------DEHIRTAYNINV 198 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~-------~~~~~~~~~~nv 198 (366)
. ..++.++.+|+.+........+..+.+.++|++|||||.... ...++..+++|+
T Consensus 46 ---------------~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~ 107 (245)
T 3e9n_A 46 ---------------E---IEGVEPIESDIVKEVLEEGGVDKLKNLDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNV 107 (245)
T ss_dssp ---------------T---STTEEEEECCHHHHHHTSSSCGGGTTCSCCSEEEECC----------CHHHHHHHHHHHHT
T ss_pred ---------------h---hcCCcceecccchHHHHHHHHHHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHh
Confidence 0 145788889988753100000111112368999999997532 234567889999
Q ss_pred HHHHHHHHHHHhc--CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHH
Q psy17528 199 KGTQTILALAKRM--KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLT 276 (366)
Q Consensus 199 ~~~~~ll~~a~~~--~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~s 276 (366)
.++..+.+.+.+. ....++|++||..++.... ....|+.+
T Consensus 108 ~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~--------------------------------------~~~~Y~as 149 (245)
T 3e9n_A 108 IVPAELSRQLLPALRAASGCVIYINSGAGNGPHP--------------------------------------GNTIYAAS 149 (245)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEC------------------------------------------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEEcCcccccCCC--------------------------------------CchHHHHH
Confidence 9988777765421 0125899999987653211 11689999
Q ss_pred HHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHH
Q psy17528 277 KATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVI 351 (366)
Q Consensus 277 K~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva 351 (366)
|...+.+.+.+. +++++++++||.|.++...... .... .......++..+|+|
T Consensus 150 K~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~-------------~~~~---------~~~~~~~~~~p~dvA 207 (245)
T 3e9n_A 150 KHALRGLADAFRKEEANNGIRVSTVSPGPTNTPMLQGLM-------------DSQG---------TNFRPEIYIEPKEIA 207 (245)
T ss_dssp HHHHHHHHHHHHHHHGGGTCEEEEEEECCC--------------------------------------CCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCeEEEEEecCCccCchhhhhh-------------hhhh---------cccccccCCCHHHHH
Confidence 999999987765 6899999999999887432110 0000 001124578999999
Q ss_pred HHHHHHHHhhh
Q psy17528 352 NAMAALAWYFL 362 (366)
Q Consensus 352 ~ai~~~~~~~~ 362 (366)
++++.++..+.
T Consensus 208 ~~i~~l~~~~~ 218 (245)
T 3e9n_A 208 NAIRFVIDAGE 218 (245)
T ss_dssp HHHHHHHTSCT
T ss_pred HHHHHHHcCCC
Confidence 99999997764
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.3e-16 Score=145.18 Aligned_cols=200 Identities=17% Similarity=0.145 Sum_probs=138.9
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
+.+++++++||||+|+||.+++++|++.| .+|++++|+... .+.+.+.+. ..
T Consensus 10 ~~l~~k~vlITGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~---~~~~~~~~~--------~~-------------- 61 (247)
T 3i1j_A 10 ELLKGRVILVTGAARGIGAAAARAYAAHG---ASVVLLGRTEAS---LAEVSDQIK--------SA-------------- 61 (247)
T ss_dssp TTTTTCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHHHH--------HT--------------
T ss_pred ccCCCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEecCHHH---HHHHHHHHH--------hc--------------
Confidence 45779999999999999999999999999 889999997432 122222111 10
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccC--CcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC--------h
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQL--EADTFGLSARDEELLIS-------QTTIIFHIAATVR--------F 186 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl--~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~--------~ 186 (366)
...+..++.+|+ .+.+ .+..+++ ++|++|||||... .
T Consensus 62 --------------------~~~~~~~~~~d~d~~~~~------~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~ 115 (247)
T 3i1j_A 62 --------------------GQPQPLIIALNLENATAQ------QYRELAARVEHEFGRLDGLLHNASIIGPRTPLEQLP 115 (247)
T ss_dssp --------------------TSCCCEEEECCTTTCCHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCCSCGGGSC
T ss_pred --------------------CCCCceEEEeccccCCHH------HHHHHHHHHHHhCCCCCEEEECCccCCCCCCcccCC
Confidence 124566777777 6554 5555443 7899999999742 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHh---cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhh
Q psy17528 187 DEHIRTAYNINVKGTQTILALAKR---MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNE 263 (366)
Q Consensus 187 ~~~~~~~~~~nv~~~~~ll~~a~~---~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 263 (366)
...++..+++|+.++..+++.+.+ ..+..++|++||...+....
T Consensus 116 ~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~--------------------------------- 162 (247)
T 3i1j_A 116 DEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGRKGRA--------------------------------- 162 (247)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECCGGGTSCCT---------------------------------
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcchhhcCCCC---------------------------------
Confidence 245678899999999999887743 12557899999986542211
Q ss_pred cccCCCCchHHHHHHHHHHHHHHhc------CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCC
Q psy17528 264 HIIGGKPNSYTLTKATAEDLVRQVG------HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTD 337 (366)
Q Consensus 264 ~~~~~~~~~Y~~sK~~~E~~l~~~~------~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~ 337 (366)
....|+.+|...+.+.+.+. +++.++.++||.|..+. .......
T Consensus 163 -----~~~~Y~~sK~a~~~~~~~la~e~~~~~~i~v~~v~PG~v~t~~-----------------~~~~~~~-------- 212 (247)
T 3i1j_A 163 -----NWGAYGVSKFATEGLMQTLADELEGVTAVRANSINPGATRTGM-----------------RAQAYPD-------- 212 (247)
T ss_dssp -----TCHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEECCCCSSHH-----------------HHHHSTT--------
T ss_pred -----CcchhHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCcccCcc-----------------chhcccc--------
Confidence 11689999999999887654 47889999999886531 1111111
Q ss_pred CCcccCcccHHHHHHHHHHHHHhh
Q psy17528 338 PNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 338 ~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
.....+...+|+|++++.++...
T Consensus 213 -~~~~~~~~p~dva~~~~~l~s~~ 235 (247)
T 3i1j_A 213 -ENPLNNPAPEDIMPVYLYLMGPD 235 (247)
T ss_dssp -SCGGGSCCGGGGTHHHHHHHSGG
T ss_pred -cCccCCCCHHHHHHHHHHHhCch
Confidence 11234567899999999988654
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-16 Score=150.16 Aligned_cols=208 Identities=11% Similarity=0.085 Sum_probs=144.8
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.++++++|||||+|+||.+++++|++.| .+|++++|+... .+.+.+.
T Consensus 27 ~l~~k~vlVTGas~GIG~aia~~l~~~G---~~Vi~~~r~~~~---~~~~~~~--------------------------- 73 (281)
T 3ppi_A 27 QFEGASAIVSGGAGGLGEATVRRLHADG---LGVVIADLAAEK---GKALADE--------------------------- 73 (281)
T ss_dssp GGTTEEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHH---------------------------
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCChHH---HHHHHHH---------------------------
Confidence 4678999999999999999999999999 889999997421 1111111
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh------CcCEEEEc-CcccC------------
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS------QTTIIFHI-AATVR------------ 185 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~------~~d~Vih~-a~~~~------------ 185 (366)
...++.++.+|+++.+ .+..+++ ++|++||| |+...
T Consensus 74 -------------------~~~~~~~~~~Dl~~~~------~v~~~~~~~~~~~~id~lv~~aag~~~~~~~~~~~~~~~ 128 (281)
T 3ppi_A 74 -------------------LGNRAEFVSTNVTSED------SVLAAIEAANQLGRLRYAVVAHGGFGVAQRIVQRDGSPA 128 (281)
T ss_dssp -------------------HCTTEEEEECCTTCHH------HHHHHHHHHTTSSEEEEEEECCCCCCCCCCSBCTTSCBC
T ss_pred -------------------hCCceEEEEcCCCCHH------HHHHHHHHHHHhCCCCeEEEccCcccccccccccccccC
Confidence 1257889999999977 6666664 57999999 44321
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhc---------CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchH
Q psy17528 186 FDEHIRTAYNINVKGTQTILALAKRM---------KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDE 256 (366)
Q Consensus 186 ~~~~~~~~~~~nv~~~~~ll~~a~~~---------~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~ 256 (366)
....++..+++|+.++..+++.+... .+..+||++||..++....
T Consensus 129 ~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------------------------- 182 (281)
T 3ppi_A 129 DMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYEGQI-------------------------- 182 (281)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGTSCCT--------------------------
T ss_pred CHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEecccccCCCC--------------------------
Confidence 12346788999999999988876531 2345899999987652211
Q ss_pred HHHhhhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcc
Q psy17528 257 EIALLNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLI 331 (366)
Q Consensus 257 ~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 331 (366)
....|+.+|...+.+.+.+. +++.+++++||.|.++..... . ...........+
T Consensus 183 ------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~-------~--~~~~~~~~~~~~ 241 (281)
T 3ppi_A 183 ------------GQTAYAAAKAGVIGLTIAAARDLSSAGIRVNTIAPGTMKTPIMESV-------G--EEALAKFAANIP 241 (281)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTT-------C--HHHHHHHHHTCC
T ss_pred ------------CCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCCchhhhcc-------c--HHHHHHHHhcCC
Confidence 12689999998888876655 689999999999986532111 0 111222222111
Q ss_pred eeecCCCCcccCcccHHHHHHHHHHHHHhhhhcC
Q psy17528 332 RVVQTDPNISMDVVPGDRVINAMAALAWYFLFSC 365 (366)
Q Consensus 332 ~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~~~~ 365 (366)
....+++.+|+|++++.++.....+|
T Consensus 242 --------~~~~~~~pedvA~~v~~l~s~~~~tG 267 (281)
T 3ppi_A 242 --------FPKRLGTPDEFADAAAFLLTNGYING 267 (281)
T ss_dssp --------SSSSCBCHHHHHHHHHHHHHCSSCCS
T ss_pred --------CCCCCCCHHHHHHHHHHHHcCCCcCC
Confidence 11458899999999999997654343
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.69 E-value=4.8e-16 Score=145.11 Aligned_cols=167 Identities=15% Similarity=0.183 Sum_probs=123.4
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++|+++||||+|+||.+++++|++.| ++|++++|+... .+.+.+. +.
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~---~~~~~~~--------~~----------------- 52 (262)
T 1zem_A 4 KFNGKVCLVTGAGGNIGLATALRLAEEG---TAIALLDMNREA---LEKAEAS--------VR----------------- 52 (262)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHH--------HH-----------------
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHH--------HH-----------------
Confidence 3678999999999999999999999999 889999997421 1111111 11
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCccc-C-------hhhh
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATV-R-------FDEH 189 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~-~-------~~~~ 189 (366)
....++.++.+|+++.+ .+..+++ ++|+||||||.. . ....
T Consensus 53 ------------------~~~~~~~~~~~D~~~~~------~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~ 108 (262)
T 1zem_A 53 ------------------EKGVEARSYVCDVTSEE------AVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDD 108 (262)
T ss_dssp ------------------TTTSCEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCBCGGGCCHHH
T ss_pred ------------------hcCCcEEEEEecCCCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCccccCCHHH
Confidence 01246889999999876 5655554 789999999965 2 1345
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 190 IRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 190 ~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
++..+++|+.++..+++.+.+. .+..+||++||..++....
T Consensus 109 ~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------------------------------ 152 (262)
T 1zem_A 109 FARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPP------------------------------------ 152 (262)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSCCT------------------------------------
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCCC------------------------------------
Confidence 6788999999999888876542 2457999999986542210
Q ss_pred CCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccC
Q psy17528 267 GGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPT 304 (366)
Q Consensus 267 ~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~ 304 (366)
....|+.+|...+.+.+... +++++++++||.|..+
T Consensus 153 --~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~ 193 (262)
T 1zem_A 153 --NMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPG 193 (262)
T ss_dssp --TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSS
T ss_pred --CCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEecCCcCcc
Confidence 01679999998888776654 6899999999998765
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=8.6e-16 Score=156.71 Aligned_cols=206 Identities=17% Similarity=0.180 Sum_probs=147.3
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
.+.++++||||||+|+||.+++++|.+.|. .+|++++|+.......+++.+.+. .
T Consensus 222 ~~~~~~~vLITGgtGgIG~~la~~La~~G~--~~vvl~~R~~~~~~~~~~l~~~l~--------~--------------- 276 (486)
T 2fr1_A 222 EWKPTGTVLVTGGTGGVGGQIARWLARRGA--PHLLLVSRSGPDADGAGELVAELE--------A--------------- 276 (486)
T ss_dssp CCCCCSEEEEETTTSHHHHHHHHHHHHHTC--SEEEEEESSGGGSTTHHHHHHHHH--------H---------------
T ss_pred CcCCCCEEEEECCCCHHHHHHHHHHHHcCC--CEEEEEcCCCCCcHHHHHHHHHHH--------h---------------
Confidence 345689999999999999999999999972 369999998643322233322211 1
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCc------CEEEEcCcccCh-------hhhH
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQT------TIIFHIAATVRF-------DEHI 190 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~------d~Vih~a~~~~~-------~~~~ 190 (366)
...++.++.+|++|.+ .+..+++.+ |+|||+||.... ...+
T Consensus 277 --------------------~g~~v~~~~~Dv~d~~------~v~~~~~~i~~~g~ld~VIh~AG~~~~~~l~~~~~~~~ 330 (486)
T 2fr1_A 277 --------------------LGARTTVAACDVTDRE------SVRELLGGIGDDVPLSAVFHAAATLDDGTVDTLTGERI 330 (486)
T ss_dssp --------------------TTCEEEEEECCTTCHH------HHHHHHHTSCTTSCEEEEEECCCCCCCCCGGGCCHHHH
T ss_pred --------------------cCCEEEEEEeCCCCHH------HHHHHHHHHHhcCCCcEEEECCccCCCCccccCCHHHH
Confidence 1357889999999987 788888754 999999997532 3456
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCC
Q psy17528 191 RTAYNINVKGTQTILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKP 270 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (366)
...+++|+.++.++.+++... +.++||++||..++.... ..
T Consensus 331 ~~~~~~nv~g~~~L~~~~~~~-~~~~~V~~SS~a~~~g~~--------------------------------------g~ 371 (486)
T 2fr1_A 331 ERASRAKVLGARNLHELTREL-DLTAFVLFSSFASAFGAP--------------------------------------GL 371 (486)
T ss_dssp HHHTHHHHHHHHHHHHHHTTS-CCSEEEEEEEHHHHTCCT--------------------------------------TC
T ss_pred HHHHHHHHHHHHHHHHHhCcC-CCCEEEEEcChHhcCCCC--------------------------------------CC
Confidence 778889999999999998876 788999999975442110 11
Q ss_pred chHHHHHHHHHHHHHHhc-CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHH
Q psy17528 271 NSYTLTKATAEDLVRQVG-HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDR 349 (366)
Q Consensus 271 ~~Y~~sK~~~E~~l~~~~-~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdD 349 (366)
..|+.+|...+.+..... .|+++++|+||.+.+++.... . ... .+ ......+++.+|
T Consensus 372 ~~Yaaaka~l~~la~~~~~~gi~v~~i~pG~~~~~gm~~~------------~----~~~---~~---~~~g~~~i~~e~ 429 (486)
T 2fr1_A 372 GGYAPGNAYLDGLAQQRRSDGLPATAVAWGTWAGSGMAEG------------P----VAD---RF---RRHGVIEMPPET 429 (486)
T ss_dssp TTTHHHHHHHHHHHHHHHHTTCCCEEEEECCBC-------------------------------C---TTTTEECBCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEEECCeeCCCcccch------------h----HHH---HH---HhcCCCCCCHHH
Confidence 679999999999887766 899999999999987642100 0 000 00 012345789999
Q ss_pred HHHHHHHHHHhh
Q psy17528 350 VINAMAALAWYF 361 (366)
Q Consensus 350 va~ai~~~~~~~ 361 (366)
+++++..++...
T Consensus 430 ~a~~l~~~l~~~ 441 (486)
T 2fr1_A 430 ACRALQNALDRA 441 (486)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 999999888754
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-15 Score=147.76 Aligned_cols=207 Identities=15% Similarity=0.127 Sum_probs=146.1
Q ss_pred cccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCH----HHHHHHHhhhhhhhhhhhcCCCCCCc
Q psy17528 41 PIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSI----TQRVYNYFNDAVFDRMRLECPNYADK 116 (366)
Q Consensus 41 ~~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~ 116 (366)
+....+++++||||||+|+||.+++++|++.| .+|++++|+...... .+...+. +.
T Consensus 38 ~~~~~l~gk~vlVTGas~GIG~aia~~La~~G---a~Vvl~~r~~~~~~~l~~~l~~~~~~--------~~--------- 97 (346)
T 3kvo_A 38 PNTGRLAGCTVFITGASRGIGKAIALKAAKDG---ANIVIAAKTAQPHPKLLGTIYTAAEE--------IE--------- 97 (346)
T ss_dssp CCCSTTTTCEEEEETTTSHHHHHHHHHHHTTT---CEEEEEESCCSCCSSSCCCHHHHHHH--------HH---------
T ss_pred ccCCCCCCCEEEEeCCChHHHHHHHHHHHHCC---CEEEEEECChhhhhhhHHHHHHHHHH--------HH---------
Confidence 34456789999999999999999999999999 899999998654211 1111111 11
Q ss_pred cccccccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC----
Q psy17528 117 VDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR---- 185 (366)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~---- 185 (366)
....++.++.+|+++.+ .+..+++ ++|+||||||...
T Consensus 98 --------------------------~~g~~~~~~~~Dv~d~~------~v~~~~~~~~~~~g~iDilVnnAG~~~~~~~ 145 (346)
T 3kvo_A 98 --------------------------AVGGKALPCIVDVRDEQ------QISAAVEKAIKKFGGIDILVNNASAISLTNT 145 (346)
T ss_dssp --------------------------HTTCEEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCT
T ss_pred --------------------------hcCCeEEEEEccCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCc
Confidence 11357889999999986 6666654 7899999999743
Q ss_pred ---hhhhHHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHH
Q psy17528 186 ---FDEHIRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIA 259 (366)
Q Consensus 186 ---~~~~~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~ 259 (366)
....++..+++|+.++..+++++... .+..+||++||...+.... .
T Consensus 146 ~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~~~~~~-------~--------------------- 197 (346)
T 3kvo_A 146 LDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNPVW-------F--------------------- 197 (346)
T ss_dssp TTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCCCCGGG-------T---------------------
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHHcCCCC-------C---------------------
Confidence 13456788999999999999987532 2457999999986552210 0
Q ss_pred hhhhcccCCCCchHHHHHHHHHHHHHHhc----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeec
Q psy17528 260 LLNEHIIGGKPNSYTLTKATAEDLVRQVG----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQ 335 (366)
Q Consensus 260 ~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~ 335 (366)
.....|+.+|...+.+.+.+. .++.++.+.|+.+..+. +.. ...+
T Consensus 198 --------~~~~~Y~aSKaal~~l~~~la~e~~~gIrvn~v~PG~~i~T~----------------~~~-~~~~------ 246 (346)
T 3kvo_A 198 --------KQHCAYTIAKYGMSMYVLGMAEEFKGEIAVNALWPKTAIHTA----------------AMD-MLGG------ 246 (346)
T ss_dssp --------SSSHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECSBCBCCH----------------HHH-HHCC------
T ss_pred --------CCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCccccH----------------HHH-hhcc------
Confidence 011689999999999987766 58999999999644321 111 1111
Q ss_pred CCCCcccCcccHHHHHHHHHHHHHh
Q psy17528 336 TDPNISMDVVPGDRVINAMAALAWY 360 (366)
Q Consensus 336 ~~~~~~~~~v~vdDva~ai~~~~~~ 360 (366)
......+...+|+|++++.++..
T Consensus 247 --~~~~~r~~~pedvA~~v~~L~s~ 269 (346)
T 3kvo_A 247 --PGIESQCRKVDIIADAAYSIFQK 269 (346)
T ss_dssp ----CGGGCBCTHHHHHHHHHHHTS
T ss_pred --ccccccCCCHHHHHHHHHHHHhc
Confidence 11233467889999999998876
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-15 Score=146.86 Aligned_cols=209 Identities=13% Similarity=0.081 Sum_probs=141.3
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEE-cCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLI-RTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~-R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
++++++|||||+|+||.+++++|++.| .+|++++ |+... .+.+.+. +...
T Consensus 44 l~~k~~lVTGas~GIG~aia~~La~~G---~~Vv~~~~r~~~~---~~~~~~~--------l~~~--------------- 94 (328)
T 2qhx_A 44 PTVPVALVTGAAKRLGRSIAEGLHAEG---YAVCLHYHRSAAE---ANALSAT--------LNAR--------------- 94 (328)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSCHHH---HHHHHHH--------HHHH---------------
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEcCCCHHH---HHHHHHH--------HHhh---------------
Confidence 568999999999999999999999999 8899999 76321 1111111 1100
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCC------------HHHHHHHHh-------CcCEEEEcCcccC
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLS------------ARDEELLIS-------QTTIIFHIAATVR 185 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~------------~~~~~~~~~-------~~d~Vih~a~~~~ 185 (366)
...++.++.+|+++.+ ++. ...+..+++ .+|+||||||...
T Consensus 95 -------------------~~~~~~~~~~Dl~d~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~ 154 (328)
T 2qhx_A 95 -------------------RPNSAITVQADLSNVA-TAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFY 154 (328)
T ss_dssp -------------------STTCEEEEECCCSSSC-BCC-------CCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred -------------------cCCeEEEEEeeCCCch-hccccccccccccccHHHHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 1246888999999865 000 002333332 7899999999742
Q ss_pred h---------------------hhhHHHHHHHHHHHHHHHHHHHHhc---CC------CcEEEEeeCcceecCccccccc
Q psy17528 186 F---------------------DEHIRTAYNINVKGTQTILALAKRM---KG------LKSFVHVSTAYCNCDRKFIAEK 235 (366)
Q Consensus 186 ~---------------------~~~~~~~~~~nv~~~~~ll~~a~~~---~~------~~~~v~iSS~~~~~~~~~~~e~ 235 (366)
. ...++..+++|+.++..+++++.+. .+ ..+||++||..++....
T Consensus 155 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~IV~isS~~~~~~~~----- 229 (328)
T 2qhx_A 155 PTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPLL----- 229 (328)
T ss_dssp CCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHSCGGGSCSCEEEEEECCTTTTSCCT-----
T ss_pred CCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCCcEEEEECchhhccCCC-----
Confidence 1 3456678999999999888876531 13 57999999986542210
Q ss_pred cCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCC
Q psy17528 236 FYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMP 310 (366)
Q Consensus 236 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~ 310 (366)
....|+.+|...+.+.+.+. .++.+++++||.|.++. ...
T Consensus 230 ---------------------------------~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~-~~~- 274 (328)
T 2qhx_A 230 ---------------------------------GYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVD-DMP- 274 (328)
T ss_dssp ---------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCCC-CSC-
T ss_pred ---------------------------------CcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCCc-ccc-
Confidence 11689999999999887765 58999999999999875 211
Q ss_pred ccccccchHHHHHHHHhcCcceeecCCCCccc-CcccHHHHHHHHHHHHHhh
Q psy17528 311 LWIKGFNGVMALALGAGTGLIRVVQTDPNISM-DVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~-~~v~vdDva~ai~~~~~~~ 361 (366)
. .......... ... -+...+|+|++++.++...
T Consensus 275 ------~---~~~~~~~~~~---------p~~~r~~~pedvA~~v~~l~s~~ 308 (328)
T 2qhx_A 275 ------P---AVWEGHRSKV---------PLYQRDSSAAEVSDVVIFLCSSK 308 (328)
T ss_dssp ------H---HHHHHHHTTC---------TTTTSCBCHHHHHHHHHHHHSGG
T ss_pred ------H---HHHHHHHhhC---------CCCCCCCCHHHHHHHHHHHhCcc
Confidence 1 1111121111 111 4678999999999988653
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.2e-16 Score=140.84 Aligned_cols=193 Identities=10% Similarity=0.011 Sum_probs=138.3
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|+++||||+|+||.+++++|++.| .+|++++|+.
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~l~~~G---~~V~~~~r~~---------------------------------------- 40 (223)
T 3uce_A 4 SDKTVYVVLGGTSGIGAELAKQLESEH---TIVHVASRQT---------------------------------------- 40 (223)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHCSTT---EEEEEESGGG----------------------------------------
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEecCCc----------------------------------------
Confidence 457899999999999999999999998 8999988852
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh---CcCEEEEcCcccC--------hhhhHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS---QTTIIFHIAATVR--------FDEHIRTAY 194 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~---~~d~Vih~a~~~~--------~~~~~~~~~ 194 (366)
. +|+++.+ .+.++++ ++|++|||||... ....++..+
T Consensus 41 --------------------~------~D~~~~~------~v~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~ 88 (223)
T 3uce_A 41 --------------------G------LDISDEK------SVYHYFETIGAFDHLIVTAGSYAPAGKVVDVEVTQAKYAF 88 (223)
T ss_dssp --------------------T------CCTTCHH------HHHHHHHHHCSEEEEEECCCCCCCCSCTTTSCHHHHHHHH
T ss_pred --------------------c------cCCCCHH------HHHHHHHHhCCCCEEEECCCCCCCCCCcccCCHHHHHhhh
Confidence 0 6888766 6666664 7899999999752 234567789
Q ss_pred HHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchH
Q psy17528 195 NINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSY 273 (366)
Q Consensus 195 ~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 273 (366)
++|+.++..+++.+.+. ....++|++||...+.... ....|
T Consensus 89 ~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~--------------------------------------~~~~Y 130 (223)
T 3uce_A 89 DTKFWGAVLAAKHGARYLKQGGSITLTSGMLSRKVVA--------------------------------------NTYVK 130 (223)
T ss_dssp HHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGTSCCT--------------------------------------TCHHH
T ss_pred eeeeeeHHHHHHHHHhhccCCeEEEEecchhhccCCC--------------------------------------CchHH
Confidence 99999999999988763 1224899999986553211 12689
Q ss_pred HHHHHHHHHHHHHhc---CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHH
Q psy17528 274 TLTKATAEDLVRQVG---HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRV 350 (366)
Q Consensus 274 ~~sK~~~E~~l~~~~---~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDv 350 (366)
+.+|...+.+.+.+. ..++++.++||.|.++....... .....+....... .....+.+.+|+
T Consensus 131 ~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~-----~~~~~~~~~~~~~---------~~~~~~~~~~dv 196 (223)
T 3uce_A 131 AAINAAIEATTKVLAKELAPIRVNAISPGLTKTEAYKGMNA-----DDRDAMYQRTQSH---------LPVGKVGEASDI 196 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSEEEEEEECSBCSGGGTTSCH-----HHHHHHHHHHHHH---------STTCSCBCHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcchhhhhcch-----hhHHHHHHHHhhc---------CCCCCccCHHHH
Confidence 999999999988776 33999999999999874432110 0011111111111 123457889999
Q ss_pred HHHHHHHHHhhhhcC
Q psy17528 351 INAMAALAWYFLFSC 365 (366)
Q Consensus 351 a~ai~~~~~~~~~~~ 365 (366)
|++++.++.....+|
T Consensus 197 A~~~~~l~~~~~~tG 211 (223)
T 3uce_A 197 AMAYLFAIQNSYMTG 211 (223)
T ss_dssp HHHHHHHHHCTTCCS
T ss_pred HHHHHHHccCCCCCC
Confidence 999999887544343
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.68 E-value=8.2e-16 Score=144.54 Aligned_cols=206 Identities=15% Similarity=0.167 Sum_probs=141.1
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||.+++++|++.| ++|++++|+... .+.+.+ .
T Consensus 7 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~---~~~~~~------------~---------------- 52 (270)
T 1yde_A 7 YAGKVVVVTGGGRGIGAGIVRAFVNSG---ARVVICDKDESG---GRALEQ------------E---------------- 52 (270)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHH------------H----------------
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHH------------H----------------
Confidence 578999999999999999999999999 889999997421 111111 0
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh--------hhhH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF--------DEHI 190 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~--------~~~~ 190 (366)
. .++.++.+|+++.+ .+..+++ ++|++|||||.... ...+
T Consensus 53 ---------------~----~~~~~~~~Dv~d~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~ 107 (270)
T 1yde_A 53 ---------------L----PGAVFILCDVTQED------DVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGF 107 (270)
T ss_dssp ---------------C----TTEEEEECCTTSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHH
T ss_pred ---------------h----cCCeEEEcCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHH
Confidence 1 24778999999976 6666654 68999999996421 2346
Q ss_pred HHHHHHHHHHHHHHHHHHHhc--CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 191 RTAYNINVKGTQTILALAKRM--KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~--~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
+..+++|+.++..+++++.+. ....++|++||..+.... +
T Consensus 108 ~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~--------------------------------------~ 149 (270)
T 1yde_A 108 RQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAIGQ--------------------------------------A 149 (270)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHHCC--------------------------------------T
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcCccccCCC--------------------------------------C
Confidence 788999999999998877531 124699999997543211 0
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
....|+.+|...+.+.+.+. +++++++++||.|+++..... ..........+...... .....
T Consensus 150 ~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~Pg~v~t~~~~~~---~~~~~~~~~~~~~~~~~---------~p~~r 217 (270)
T 1yde_A 150 QAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEEL---AALMPDPRASIREGMLA---------QPLGR 217 (270)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHH---HTTSSSHHHHHHHHHHT---------STTSS
T ss_pred CCcccHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCccccchhhhh---hhcccchHHHHHHHhhc---------CCCCC
Confidence 11679999999999887765 689999999999998632100 00000000111111110 11234
Q ss_pred cccHHHHHHHHHHHHHh
Q psy17528 344 VVPGDRVINAMAALAWY 360 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~ 360 (366)
+...+|+|++++.++..
T Consensus 218 ~~~p~dva~~v~~L~s~ 234 (270)
T 1yde_A 218 MGQPAEVGAAAVFLASE 234 (270)
T ss_dssp CBCHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHccc
Confidence 67899999999988865
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=99.68 E-value=6.7e-16 Score=143.92 Aligned_cols=209 Identities=14% Similarity=0.072 Sum_probs=145.8
Q ss_pred cCCCCeEEEeCCc--chHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccc
Q psy17528 45 FYKDQTIFITGAT--GFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGIT 122 (366)
Q Consensus 45 ~~~~~~ilItGat--G~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (366)
.+++++|+||||+ |+||.+++++|++.| .+|++++|+.... ..+.+.++.. .
T Consensus 17 ~l~~k~vlITGas~~~giG~~~a~~l~~~G---~~v~~~~~~~~~~-~~~~~~~l~~---------~------------- 70 (267)
T 3gdg_A 17 SLKGKVVVVTGASGPKGMGIEAARGCAEMG---AAVAITYASRAQG-AEENVKELEK---------T------------- 70 (267)
T ss_dssp CCTTCEEEETTCCSSSSHHHHHHHHHHHTS---CEEEECBSSSSSH-HHHHHHHHHH---------H-------------
T ss_pred CcCCCEEEEECCCCCCChHHHHHHHHHHCC---CeEEEEeCCcchh-HHHHHHHHHH---------h-------------
Confidence 3678999999999 899999999999999 8999998876432 1122221110 0
Q ss_pred cccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhh
Q psy17528 123 HRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDE 188 (366)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~ 188 (366)
...++.++.+|+++.+ .+..+++ .+|++|||||... ...
T Consensus 71 ---------------------~~~~~~~~~~Dl~~~~------~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~ 123 (267)
T 3gdg_A 71 ---------------------YGIKAKAYKCQVDSYE------SCEKLVKDVVADFGQIDAFIANAGATADSGILDGSVE 123 (267)
T ss_dssp ---------------------HCCCEECCBCCTTCHH------HHHHHHHHHHHHTSCCSEEEECCCCCCCSCTTTSCHH
T ss_pred ---------------------cCCceeEEecCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHH
Confidence 1257888999999976 6666554 5799999999753 234
Q ss_pred hHHHHHHHHHHHHHHHHHHHH----hcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhc
Q psy17528 189 HIRTAYNINVKGTQTILALAK----RMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEH 264 (366)
Q Consensus 189 ~~~~~~~~nv~~~~~ll~~a~----~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 264 (366)
.++..+++|+.++..+++.+. +. +..++|++||...+.... +++
T Consensus 124 ~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~~~~~~-------~~~------------------------ 171 (267)
T 3gdg_A 124 AWNHVVQVDLNGTFHCAKAVGHHFKER-GTGSLVITASMSGHIANF-------PQE------------------------ 171 (267)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCGGGTSCCS-------SSC------------------------
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHc-CCceEEEEccccccccCC-------CCC------------------------
Confidence 567899999999999888763 33 456999999976542210 001
Q ss_pred ccCCCCchHHHHHHHHHHHHHHhc----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCc
Q psy17528 265 IIGGKPNSYTLTKATAEDLVRQVG----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNI 340 (366)
Q Consensus 265 ~~~~~~~~Y~~sK~~~E~~l~~~~----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~ 340 (366)
...|+.+|...+.+.+.+. ..+.++.+.||.|..+..... . ........ ....
T Consensus 172 -----~~~Y~~sK~a~~~~~~~la~e~~~~i~v~~v~PG~v~t~~~~~~-------~--~~~~~~~~---------~~~~ 228 (267)
T 3gdg_A 172 -----QTSYNVAKAGCIHMARSLANEWRDFARVNSISPGYIDTGLSDFV-------P--KETQQLWH---------SMIP 228 (267)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEECCEECSCGGGS-------C--HHHHHHHH---------TTST
T ss_pred -----CCcchHHHHHHHHHHHHHHHHhccCcEEEEEECCccccchhhhC-------C--HHHHHHHH---------hcCC
Confidence 1679999999999998766 338899999999987543211 1 11111111 1223
Q ss_pred ccCcccHHHHHHHHHHHHHhh
Q psy17528 341 SMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 341 ~~~~v~vdDva~ai~~~~~~~ 361 (366)
...+.+.+|+|++++.++...
T Consensus 229 ~~r~~~~~dva~~~~~l~s~~ 249 (267)
T 3gdg_A 229 MGRDGLAKELKGAYVYFASDA 249 (267)
T ss_dssp TSSCEETHHHHHHHHHHHSTT
T ss_pred CCCCcCHHHHHhHhheeecCc
Confidence 456788999999999988653
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=99.68 E-value=4e-15 Score=138.78 Aligned_cols=204 Identities=12% Similarity=0.131 Sum_probs=145.8
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
+.+++|+++||||++.||.++++.|.+.| .+|++.+|+....
T Consensus 7 dlf~GK~alVTGas~GIG~aia~~la~~G---a~Vv~~~~~~~~~----------------------------------- 48 (242)
T 4b79_A 7 DIYAGQQVLVTGGSSGIGAAIAMQFAELG---AEVVALGLDADGV----------------------------------- 48 (242)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSTTST-----------------------------------
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCCHHHH-----------------------------------
Confidence 44689999999999999999999999999 8999999986432
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh---CcCEEEEcCcccCh-----hhhHHHHHH
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS---QTTIIFHIAATVRF-----DEHIRTAYN 195 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~---~~d~Vih~a~~~~~-----~~~~~~~~~ 195 (366)
......++..+.+|+++++ ++.++++ ++|++|||||.... ...++..++
T Consensus 49 -----------------~~~~~~~~~~~~~Dv~~~~------~v~~~~~~~g~iDiLVNNAGi~~~~~~~~~~~w~~~~~ 105 (242)
T 4b79_A 49 -----------------HAPRHPRIRREELDITDSQ------RLQRLFEALPRLDVLVNNAGISRDREEYDLATFERVLR 105 (242)
T ss_dssp -----------------TSCCCTTEEEEECCTTCHH------HHHHHHHHCSCCSEEEECCCCCCGGGGGSHHHHHHHHH
T ss_pred -----------------hhhhcCCeEEEEecCCCHH------HHHHHHHhcCCCCEEEECCCCCCCcccCCHHHHHHHHH
Confidence 1112357889999999987 6766665 78999999997532 246788999
Q ss_pred HHHHHHHHHHHHHHhc--CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchH
Q psy17528 196 INVKGTQTILALAKRM--KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSY 273 (366)
Q Consensus 196 ~nv~~~~~ll~~a~~~--~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 273 (366)
+|+.++..+.+++.+. .+-.++|.+||....... +....|
T Consensus 106 vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~~~--------------------------------------~~~~~Y 147 (242)
T 4b79_A 106 LNLSAAMLASQLARPLLAQRGGSILNIASMYSTFGS--------------------------------------ADRPAY 147 (242)
T ss_dssp HHTHHHHHHHHHHHHHHHHHCEEEEEECCGGGTSCC--------------------------------------SSCHHH
T ss_pred HhhHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCC--------------------------------------CCCHHH
Confidence 9999988877765432 122689999998654221 112679
Q ss_pred HHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHH
Q psy17528 274 TLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGD 348 (366)
Q Consensus 274 ~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vd 348 (366)
+.+|.....+.+... +|++++.+-||.|..|...... ............. ...-+...+
T Consensus 148 ~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~m~~~~~-------~~~~~~~~~~~~~---------PlgR~g~pe 211 (242)
T 4b79_A 148 SASKGAIVQLTRSLACEYAAERIRVNAIAPGWIDTPLGAGLK-------ADVEATRRIMQRT---------PLARWGEAP 211 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCC-----C-------CCHHHHHHHHHTC---------TTCSCBCHH
T ss_pred HHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCCChhhhccc-------CCHHHHHHHHhcC---------CCCCCcCHH
Confidence 999999888887655 7999999999999876432211 0011222222221 122367789
Q ss_pred HHHHHHHHHHHhhh
Q psy17528 349 RVINAMAALAWYFL 362 (366)
Q Consensus 349 Dva~ai~~~~~~~~ 362 (366)
|+|++++.++...+
T Consensus 212 eiA~~v~fLaSd~a 225 (242)
T 4b79_A 212 EVASAAAFLCGPGA 225 (242)
T ss_dssp HHHHHHHHHTSGGG
T ss_pred HHHHHHHHHhCchh
Confidence 99999999875543
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-15 Score=142.22 Aligned_cols=206 Identities=15% Similarity=0.144 Sum_probs=126.6
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++++||||||+|+||.+++++|++.| .+|++++|+.... +...+ .+..
T Consensus 9 ~~~~k~vlITGas~GIG~~~a~~L~~~G---~~V~~~~r~~~~~---~~~~~--------~l~~---------------- 58 (311)
T 3o26_A 9 VTKRRCAVVTGGNKGIGFEICKQLSSNG---IMVVLTCRDVTKG---HEAVE--------KLKN---------------- 58 (311)
T ss_dssp ---CCEEEESSCSSHHHHHHHHHHHHTT---CEEEEEESCHHHH---HHHHH--------HHHT----------------
T ss_pred cCCCcEEEEecCCchHHHHHHHHHHHCC---CEEEEEeCCHHHH---HHHHH--------HHHh----------------
Confidence 3568999999999999999999999998 8999999975321 11111 1111
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcC-CCCCCHHHHHHHHh-------CcCEEEEcCcccCh----------
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEAD-TFGLSARDEELLIS-------QTTIIFHIAATVRF---------- 186 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~-~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~---------- 186 (366)
....++.++.+|+++. + .+..+++ ++|+||||||....
T Consensus 59 ------------------~~~~~~~~~~~Dl~~~~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~ 114 (311)
T 3o26_A 59 ------------------SNHENVVFHQLDVTDPIA------TMSSLADFIKTHFGKLDILVNNAGVAGFSVDADRFKAM 114 (311)
T ss_dssp ------------------TTCCSEEEEECCTTSCHH------HHHHHHHHHHHHHSSCCEEEECCCCCSCEECHHHHHHH
T ss_pred ------------------cCCCceEEEEccCCCcHH------HHHHHHHHHHHhCCCCCEEEECCcccccccccchhhhc
Confidence 1125789999999997 5 4444443 78999999997531
Q ss_pred ---------------------------hhhHHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccc---cc
Q psy17528 187 ---------------------------DEHIRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKF---IA 233 (366)
Q Consensus 187 ---------------------------~~~~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~---~~ 233 (366)
...++..+++|+.++..+++.+... .+..+||++||..++..... ..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~~IV~isS~~~~~~~~~~~~~~ 194 (311)
T 3o26_A 115 ISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLLQLSDSPRIVNVSSSTGSLKYVSNETAL 194 (311)
T ss_dssp HHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGSGGGCCCHHHH
T ss_pred ccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHHhhHhhccCCCCeEEEEecCCcccccccchhhh
Confidence 2334667899999998888876532 24569999999865432110 00
Q ss_pred cc-cCCCCCChHHHHHHhhhcchHHHHhhhhcccCC---CCchHHHHHHHHHHHHHHhc---CCCCEEEEecCccccCCC
Q psy17528 234 EK-FYPPVFTAEELSALVAHASDEEIALLNEHIIGG---KPNSYTLTKATAEDLVRQVG---HELPICVLRPSIVFPTLQ 306 (366)
Q Consensus 234 e~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~Y~~sK~~~E~~l~~~~---~gl~~~ilRp~~v~G~~~ 306 (366)
+. .....++..++....... ...+... ...... ....|+.+|+..+.+.+.+. .++.++.+.||.|.++..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~e~~~i~v~~v~PG~v~T~~~ 272 (311)
T 3o26_A 195 EILGDGDALTEERIDMVVNML-LKDFKEN-LIETNGWPSFGAAYTTSKACLNAYTRVLANKIPKFQVNCVCPGLVKTEMN 272 (311)
T ss_dssp HHHHCGGGCCHHHHHHHHHHH-HHHHHTT-CTTTTTCCSSCHHHHHHHHHHHHHHHHHHHHCTTSEEEEECCCSBCSGGG
T ss_pred hhhccccccchhHHHHHHHHH-Hhhhhcc-ccccccCcccchhhHHHHHHHHHHHHHHHhhcCCceEEEecCCceecCCc
Confidence 00 000001111100000000 0000000 000111 12679999999999998877 579999999999987643
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-15 Score=154.96 Aligned_cols=207 Identities=16% Similarity=0.176 Sum_probs=147.5
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
..++++||||||+|+||.+++++|.+.| ..+|++++|+.......+.+.+.+.
T Consensus 256 ~~~~~~vLITGgtGgIG~~lA~~La~~G--~~~vvl~~R~~~~~~~~~~l~~~l~------------------------- 308 (511)
T 2z5l_A 256 WQPSGTVLITGGMGAIGRRLARRLAAEG--AERLVLTSRRGPEAPGAAELAEELR------------------------- 308 (511)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTT--CSEEEEEESSGGGSTTHHHHHHHHH-------------------------
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCC--CcEEEEEecCCcccHHHHHHHHHHH-------------------------
Confidence 4568999999999999999999999987 2378999998643222222222111
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhC--cCEEEEcCcccCh-------hhhHHHHHH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQ--TTIIFHIAATVRF-------DEHIRTAYN 195 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~--~d~Vih~a~~~~~-------~~~~~~~~~ 195 (366)
....++.++.+|++|.+ .+..+++. +|+|||+||.... ...++..++
T Consensus 309 ------------------~~g~~v~~~~~Dvtd~~------~v~~~~~~~~ld~VVh~AGv~~~~~~~~~~~~~~~~~~~ 364 (511)
T 2z5l_A 309 ------------------GHGCEVVHAACDVAERD------ALAALVTAYPPNAVFHTAGILDDAVIDTLSPESFETVRG 364 (511)
T ss_dssp ------------------TTTCEEEEEECCSSCHH------HHHHHHHHSCCSEEEECCCCCCCBCGGGCCHHHHHHHHH
T ss_pred ------------------hcCCEEEEEEeCCCCHH------HHHHHHhcCCCcEEEECCcccCCcccccCCHHHHHHHHH
Confidence 12357889999999987 78888864 9999999997532 245677889
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHH
Q psy17528 196 INVKGTQTILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTL 275 (366)
Q Consensus 196 ~nv~~~~~ll~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~ 275 (366)
+|+.++.++.+++....+.++||++||........ ....|+.
T Consensus 365 ~nv~g~~~L~~~~~~~~~~~~~V~~SS~a~~~g~~--------------------------------------g~~~Yaa 406 (511)
T 2z5l_A 365 AKVCGAELLHQLTADIKGLDAFVLFSSVTGTWGNA--------------------------------------GQGAYAA 406 (511)
T ss_dssp HHHHHHHHHHHHTSSCTTCCCEEEEEEGGGTTCCT--------------------------------------TBHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEeCHHhcCCCC--------------------------------------CCHHHHH
Confidence 99999999999876543678999999985432110 0168999
Q ss_pred HHHHHHHHHHHhc-CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHH
Q psy17528 276 TKATAEDLVRQVG-HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAM 354 (366)
Q Consensus 276 sK~~~E~~l~~~~-~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai 354 (366)
+|...|.+.+... .|+++++++||.+...+.. .... . .. .. .....+++.+|+++++
T Consensus 407 aKa~ld~la~~~~~~gi~v~sv~pG~~~~tgm~------~~~~--~---~~-~~----------~~g~~~l~~e~~a~~l 464 (511)
T 2z5l_A 407 ANAALDALAERRRAAGLPATSVAWGLWGGGGMA------AGAG--E---ES-LS----------RRGLRAMDPDAAVDAL 464 (511)
T ss_dssp HHHHHHHHHHHHHTTTCCCEEEEECCBCSTTCC------CCHH--H---HH-HH----------HHTBCCBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEECCcccCCccc------cccc--H---HH-HH----------hcCCCCCCHHHHHHHH
Confidence 9999999998776 8999999999988433221 1000 0 00 00 1123468899999999
Q ss_pred HHHHHhhh
Q psy17528 355 AALAWYFL 362 (366)
Q Consensus 355 ~~~~~~~~ 362 (366)
..++....
T Consensus 465 ~~al~~~~ 472 (511)
T 2z5l_A 465 LGAMGRND 472 (511)
T ss_dssp HHHHHHTC
T ss_pred HHHHhCCC
Confidence 98887653
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-15 Score=142.70 Aligned_cols=210 Identities=17% Similarity=0.134 Sum_probs=140.4
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|++|||||+|+||.+++++|++.| .+|++++|+.. ++.+... .
T Consensus 3 l~gk~~lVTGas~GIG~aia~~la~~G---~~V~~~~r~~~------~~~~~~~---------~---------------- 48 (281)
T 3zv4_A 3 LTGEVALITGGASGLGRALVDRFVAEG---ARVAVLDKSAE------RLRELEV---------A---------------- 48 (281)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHHHH---------H----------------
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCc---CEEEEEeCCHH------HHHHHHH---------H----------------
Confidence 568999999999999999999999999 89999999742 1111110 0
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh------------
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF------------ 186 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~------------ 186 (366)
...++.++.+|+++.+ ++..+++ .+|++|||||....
T Consensus 49 ------------------~~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~ 104 (281)
T 3zv4_A 49 ------------------HGGNAVGVVGDVRSLQ------DQKRAAERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKI 104 (281)
T ss_dssp ------------------TBTTEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEECCCCCCCTTCCGGGSCTTTH
T ss_pred ------------------cCCcEEEEEcCCCCHH------HHHHHHHHHHHhcCCCCEEEECCCcCccccccccCChhhh
Confidence 1257889999999976 5655553 67999999997421
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhc--CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhc
Q psy17528 187 DEHIRTAYNINVKGTQTILALAKRM--KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEH 264 (366)
Q Consensus 187 ~~~~~~~~~~nv~~~~~ll~~a~~~--~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 264 (366)
...++..+++|+.++..+++.+.+. ....++|++||..++....
T Consensus 105 ~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------------------------------- 150 (281)
T 3zv4_A 105 DAAFDDIFHVNVKGYIHAVKACLPALVSSRGSVVFTISNAGFYPNG---------------------------------- 150 (281)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTSSSS----------------------------------
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCeEEEEecchhccCCC----------------------------------
Confidence 1246778899999999988876542 1125899999986542211
Q ss_pred ccCCCCchHHHHHHHHHHHHHHhc----CCCCEEEEecCccccCCCCCCCccccc-cchHHHHHHHHhcCcceeecCCCC
Q psy17528 265 IIGGKPNSYTLTKATAEDLVRQVG----HELPICVLRPSIVFPTLQEPMPLWIKG-FNGVMALALGAGTGLIRVVQTDPN 339 (366)
Q Consensus 265 ~~~~~~~~Y~~sK~~~E~~l~~~~----~gl~~~ilRp~~v~G~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~l~~~~~ 339 (366)
....|+.+|...+.+.+... .++.++.+.||.|..+........... ............. ..
T Consensus 151 ----~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 217 (281)
T 3zv4_A 151 ----GGPLYTATKHAVVGLVRQMAFELAPHVRVNGVAPGGMNTDLRGPSSLGLSEQSISSVPLADMLKS---------VL 217 (281)
T ss_dssp ----SCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSSCC--CCCTTCC--------CCHHHHHHH---------TC
T ss_pred ----CCchhHHHHHHHHHHHHHHHHHhcCCCEEEEEECCcCcCCcccccccccccccccchhHHHHHHh---------cC
Confidence 11679999999999988766 449999999999988743221100000 0000000011111 11
Q ss_pred cccCcccHHHHHHHHHHHHHh
Q psy17528 340 ISMDVVPGDRVINAMAALAWY 360 (366)
Q Consensus 340 ~~~~~v~vdDva~ai~~~~~~ 360 (366)
....+...+|+|++++.++..
T Consensus 218 p~~r~~~pedvA~~v~fL~s~ 238 (281)
T 3zv4_A 218 PIGRMPALEEYTGAYVFFATR 238 (281)
T ss_dssp TTSSCCCGGGGSHHHHHHHST
T ss_pred CCCCCCCHHHHHHHHHHhhcc
Confidence 234577889999999998873
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4e-15 Score=138.21 Aligned_cols=211 Identities=10% Similarity=-0.014 Sum_probs=131.7
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
||+++||||+|+||.+++++|++.| ++|++++|+.... +.+.+ +. ..
T Consensus 1 Mk~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~---~~~~~-l~--------~~------------------ 47 (254)
T 1zmt_A 1 MSTAIVTNVKHFGGMGSALRLSEAG---HTVACHDESFKQK---DELEA-FA--------ET------------------ 47 (254)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTT---CEEEECCGGGGSH---HHHHH-HH--------HH------------------
T ss_pred CeEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHHH---HHHHH-HH--------hc------------------
Confidence 4689999999999999999999999 8999999975432 11111 11 00
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCccc-C-------hhhhHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATV-R-------FDEHIRTAYNINVK 199 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~-~-------~~~~~~~~~~~nv~ 199 (366)
..++.++ |..+..- ....+.+.+.++|++|||||.. . ....++..+++|+.
T Consensus 48 -----------------~~~~~~~--d~~~v~~--~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~ 106 (254)
T 1zmt_A 48 -----------------YPQLKPM--SEQEPAE--LIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQI 106 (254)
T ss_dssp -----------------CTTSEEC--CCCSHHH--HHHHHHHHHSCCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTH
T ss_pred -----------------CCcEEEE--CHHHHHH--HHHHHHHHhCCCCEEEECCCcCCCCCChhhCCHHHHHHHHHHHhH
Confidence 0122222 3322110 0001111123789999999975 2 12456778999999
Q ss_pred HHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHH
Q psy17528 200 GTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLT 276 (366)
Q Consensus 200 ~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~s 276 (366)
++..+.+++.+. .+..++|++||..++.... ....|+.+
T Consensus 107 g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------------------------------------~~~~Y~~s 148 (254)
T 1zmt_A 107 RPFALVNAVASQMKKRKSGHIIFITSATPFGPWK--------------------------------------ELSTYTSA 148 (254)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEECCSTTTSCCT--------------------------------------TCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEECCcccccCCC--------------------------------------CchHHHHH
Confidence 999988876421 1456999999986542210 11689999
Q ss_pred HHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccc-hHHHHHHHHhcCcceeecCCCCcccCcccHHHH
Q psy17528 277 KATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFN-GVMALALGAGTGLIRVVQTDPNISMDVVPGDRV 350 (366)
Q Consensus 277 K~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDv 350 (366)
|...+.+.+... +++.+++++||.|+|+...... ...+. ............ .....+...+|+
T Consensus 149 K~a~~~~~~~la~e~~~~gi~v~~v~PG~v~~~~~~~~~--~T~~~~~~~~~~~~~~~~---------~p~~~~~~p~dv 217 (254)
T 1zmt_A 149 RAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFY--PTEPWKTNPEHVAHVKKV---------TALQRLGTQKEL 217 (254)
T ss_dssp HHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSC--BHHHHTTCHHHHHHHHHH---------SSSSSCBCHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCcEEEEEecCccccccccccC--CCcccccChHHHHHHhcc---------CCCCCCcCHHHH
Confidence 999999887765 5899999999999987643211 00000 000111111110 012247789999
Q ss_pred HHHHHHHHHhh
Q psy17528 351 INAMAALAWYF 361 (366)
Q Consensus 351 a~ai~~~~~~~ 361 (366)
|++++.++...
T Consensus 218 A~~v~~l~s~~ 228 (254)
T 1zmt_A 218 GELVAFLASGS 228 (254)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHhCcc
Confidence 99999988754
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.3e-15 Score=140.19 Aligned_cols=166 Identities=16% Similarity=0.150 Sum_probs=119.9
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|+||.+++++|++.| ++|++++|+... .+.+.+. +..
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~---~~~~~~~--------~~~----------------- 51 (260)
T 2qq5_A 3 MNGQVCVVTGASRGIGRGIALQLCKAG---ATVYITGRHLDT---LRVVAQE--------AQS----------------- 51 (260)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHH--------HHH-----------------
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHH--------HHH-----------------
Confidence 568999999999999999999999999 899999997421 1111111 111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--------CcCEEEEcCc--cc--------C--
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--------QTTIIFHIAA--TV--------R-- 185 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--------~~d~Vih~a~--~~--------~-- 185 (366)
...++.++.+|+++.+ .+..+++ .+|++||||| .. .
T Consensus 52 ------------------~~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~~g~id~lvnnAg~g~~~~~~~~~~~~~ 107 (260)
T 2qq5_A 52 ------------------LGGQCVPVVCDSSQES------EVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFW 107 (260)
T ss_dssp ------------------HSSEEEEEECCTTSHH------HHHHHHHHHHHHHTTCCCEEEECCCTTHHHHHHTTTCCTT
T ss_pred ------------------cCCceEEEECCCCCHH------HHHHHHHHHHHhcCCCceEEEECCccccccccccCCCccc
Confidence 0246788999999976 5554442 5799999994 22 1
Q ss_pred --hhhhHHHHHHHHHHHHHHHHHHHHh---cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHh
Q psy17528 186 --FDEHIRTAYNINVKGTQTILALAKR---MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIAL 260 (366)
Q Consensus 186 --~~~~~~~~~~~nv~~~~~ll~~a~~---~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~ 260 (366)
....++..+++|+.++..+.+.+.+ ..+..++|++||...+.. .+
T Consensus 108 ~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~----------~~-------------------- 157 (260)
T 2qq5_A 108 ETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSLQY----------MF-------------------- 157 (260)
T ss_dssp TSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGTCCEEEEECCGGGTSC----------CS--------------------
T ss_pred cCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcCCcEEEEEcChhhcCC----------CC--------------------
Confidence 1234667888899988777665542 124579999999865421 01
Q ss_pred hhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCC
Q psy17528 261 LNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTL 305 (366)
Q Consensus 261 ~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~ 305 (366)
...|+.+|...+.+.+.+. +++++++++||.|.++.
T Consensus 158 ---------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~ 198 (260)
T 2qq5_A 158 ---------NVPYGVGKAACDKLAADCAHELRRHGVSCVSLWPGIVQTEL 198 (260)
T ss_dssp ---------SHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCCSCTTT
T ss_pred ---------CCchHHHHHHHHHHHHHHHHHhccCCeEEEEEecCccccHH
Confidence 1679999999999987664 68999999999998764
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=99.65 E-value=2.1e-15 Score=145.98 Aligned_cols=171 Identities=12% Similarity=0.106 Sum_probs=122.9
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+++|+||||+|+||.+++++|++.| .+|+++.|+........+..+... .
T Consensus 2 ~k~vlVTGas~GIG~ala~~L~~~G---~~v~~v~r~~~~~~~~~~~~~~~~--------~------------------- 51 (327)
T 1jtv_A 2 RTVVLITGCSSGIGLHLAVRLASDP---SQSFKVYATLRDLKTQGRLWEAAR--------A------------------- 51 (327)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCT---TCCEEEEEEESCGGGTHHHHHHHH--------H-------------------
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC---CceEEEEeecCcHHHHHHHHHHhh--------h-------------------
Confidence 6799999999999999999999998 667777776433221111111000 0
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhC-----cCEEEEcCcccC-------hhhhHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQ-----TTIIFHIAATVR-------FDEHIRTAYN 195 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~-----~d~Vih~a~~~~-------~~~~~~~~~~ 195 (366)
......++.++.+|+++.+ .+..+++. +|++|||||... ....++..++
T Consensus 52 -------------~~~~~~~~~~~~~Dv~d~~------~v~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~ 112 (327)
T 1jtv_A 52 -------------LACPPGSLETLQLDVRDSK------SVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLD 112 (327)
T ss_dssp -------------TTCCTTSEEEEECCTTCHH------HHHHHHHTCTTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHH
T ss_pred -------------ccCCCCceEEEEecCCCHH------HHHHHHHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHH
Confidence 0111257889999999977 78877764 899999999642 1245678899
Q ss_pred HHHHHHHHHHHHHH----hcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCc
Q psy17528 196 INVKGTQTILALAK----RMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPN 271 (366)
Q Consensus 196 ~nv~~~~~ll~~a~----~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (366)
+|+.++..+++.+. +. +..+||++||..++... | ...
T Consensus 113 vN~~g~~~l~~~~~p~m~~~-~~g~IV~isS~~~~~~~----------~----------------------------~~~ 153 (327)
T 1jtv_A 113 VNVVGTVRMLQAFLPDMKRR-GSGRVLVTGSVGGLMGL----------P----------------------------FND 153 (327)
T ss_dssp HHTHHHHHHHHHHHHHHHHH-TCEEEEEEEEGGGTSCC----------T----------------------------TCH
T ss_pred HHhHHHHHHHHHHHHHHHhc-CCCEEEEECCcccccCC----------C----------------------------CCh
Confidence 99999999988753 32 56799999998654221 0 116
Q ss_pred hHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCC
Q psy17528 272 SYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQ 306 (366)
Q Consensus 272 ~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~ 306 (366)
.|+.+|...+.+.+.+. +++++++++||.|.++..
T Consensus 154 ~Y~aSK~a~~~~~~~la~el~~~gI~v~~v~PG~v~T~~~ 193 (327)
T 1jtv_A 154 VYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFM 193 (327)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC---
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCcccChHH
Confidence 79999999999887765 689999999999987643
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=7e-15 Score=139.61 Aligned_cols=210 Identities=14% Similarity=0.083 Sum_probs=140.2
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEE-cCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLI-RTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~-R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
+++++++||||+|+||.+++++|++.| .+|++++ |+... .+.+.+. +...
T Consensus 7 l~~k~~lVTGas~GIG~aia~~la~~G---~~V~~~~~r~~~~---~~~~~~~--------l~~~--------------- 57 (291)
T 1e7w_A 7 PTVPVALVTGAAKRLGRSIAEGLHAEG---YAVCLHYHRSAAE---ANALSAT--------LNAR--------------- 57 (291)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSCHHH---HHHHHHH--------HHHH---------------
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CeEEEEcCCCHHH---HHHHHHH--------Hhhh---------------
Confidence 568999999999999999999999999 8899999 76421 1111111 1100
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCC-----------CCHHHHHHHHh-------CcCEEEEcCcccCh
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFG-----------LSARDEELLIS-------QTTIIFHIAATVRF 186 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~g-----------l~~~~~~~~~~-------~~d~Vih~a~~~~~ 186 (366)
...++.++.+|+++.+.- .....+.++++ .+|++|||||....
T Consensus 58 -------------------~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~ 118 (291)
T 1e7w_A 58 -------------------RPNSAITVQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYP 118 (291)
T ss_dssp -------------------STTCEEEEECCCSSSCBCCCC----CCCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCC
T ss_pred -------------------cCCeeEEEEeecCCcccccccccccccccchHHHHHHHHHHHHHhcCCCCEEEECCCCCCC
Confidence 124688899999986500 00002333332 78999999996421
Q ss_pred ---------------------hhhHHHHHHHHHHHHHHHHHHHHhc---CC------CcEEEEeeCcceecCcccccccc
Q psy17528 187 ---------------------DEHIRTAYNINVKGTQTILALAKRM---KG------LKSFVHVSTAYCNCDRKFIAEKF 236 (366)
Q Consensus 187 ---------------------~~~~~~~~~~nv~~~~~ll~~a~~~---~~------~~~~v~iSS~~~~~~~~~~~e~~ 236 (366)
...++..+++|+.++..+++++.+. .+ ..+||++||..++...
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~~~~~~g~Iv~isS~~~~~~~------- 191 (291)
T 1e7w_A 119 TPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPL------- 191 (291)
T ss_dssp CCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCGGGSCSCEEEEEECCTTTTSCC-------
T ss_pred CChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCcEEEEEechhhcCCC-------
Confidence 3456778999999999988876532 13 5789999998654221
Q ss_pred CCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCc
Q psy17528 237 YPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPL 311 (366)
Q Consensus 237 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~ 311 (366)
+....|+.+|...+.+.+.+. +++.+++++||.|..+. . .
T Consensus 192 -------------------------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~-~-~-- 236 (291)
T 1e7w_A 192 -------------------------------LGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVD-D-M-- 236 (291)
T ss_dssp -------------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCGG-G-S--
T ss_pred -------------------------------CCCchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCccCCc-c-C--
Confidence 012689999999998887665 68999999999987653 1 1
Q ss_pred cccccchHHHHHHHHhcCcceeecCCCCccc-CcccHHHHHHHHHHHHHhh
Q psy17528 312 WIKGFNGVMALALGAGTGLIRVVQTDPNISM-DVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 312 ~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~-~~v~vdDva~ai~~~~~~~ 361 (366)
. ........... ... -+...+|+|++++.++...
T Consensus 237 -----~--~~~~~~~~~~~---------p~~~r~~~pedvA~~v~~l~s~~ 271 (291)
T 1e7w_A 237 -----P--PAVWEGHRSKV---------PLYQRDSSAAEVSDVVIFLCSSK 271 (291)
T ss_dssp -----C--HHHHHHHHTTC---------TTTTSCBCHHHHHHHHHHHHSGG
T ss_pred -----C--HHHHHHHHhhC---------CCCCCCCCHHHHHHHHHHHhCCc
Confidence 0 11111111111 111 3678999999999988654
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-14 Score=136.04 Aligned_cols=213 Identities=12% Similarity=0.120 Sum_probs=144.4
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++|+++||||++.||.++++.|.+.| .+|++.+|+.......+.+.+
T Consensus 4 ~L~gKvalVTGas~GIG~aia~~la~~G---a~Vv~~~r~~~~~~~~~~~~~---------------------------- 52 (258)
T 4gkb_A 4 NLQDKVVIVTGGASGIGGAISMRLAEER---AIPVVFARHAPDGAFLDALAQ---------------------------- 52 (258)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSCCCHHHHHHHHH----------------------------
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcC---CEEEEEECCcccHHHHHHHHh----------------------------
Confidence 3679999999999999999999999999 899999998654222111111
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC------hhhhHH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR------FDEHIR 191 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~------~~~~~~ 191 (366)
...++.++.+|+++++ ++..+++ ++|++|||||... ..+.++
T Consensus 53 -------------------~~~~~~~~~~Dv~~~~------~v~~~v~~~~~~~G~iDiLVNnAGi~~~~~~~~~~e~~~ 107 (258)
T 4gkb_A 53 -------------------RQPRATYLPVELQDDA------QCRDAVAQTIATFGRLDGLVNNAGVNDGIGLDAGRDAFV 107 (258)
T ss_dssp -------------------HCTTCEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCTTSCHHHHH
T ss_pred -------------------cCCCEEEEEeecCCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCccCCHHHHH
Confidence 1256788999999976 5655553 6899999999742 235678
Q ss_pred HHHHHHHHHHHHHHHHHHhc--CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCC
Q psy17528 192 TAYNINVKGTQTILALAKRM--KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGK 269 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~--~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (366)
..+++|+.++..+.+.+.+. .+-.++|.+||....... +.
T Consensus 108 ~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~~~--------------------------------------~~ 149 (258)
T 4gkb_A 108 ASLERNLIHYYAMAHYCVPHLKATRGAIVNISSKTAVTGQ--------------------------------------GN 149 (258)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTHHHHCC--------------------------------------SS
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeehhhccCC--------------------------------------CC
Confidence 88999999988877765432 122589999998654221 11
Q ss_pred CchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCc
Q psy17528 270 PNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDV 344 (366)
Q Consensus 270 ~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~ 344 (366)
...|+.+|...+.+.+... +|++++.+.||.|-.+..... ..................+ ...-+
T Consensus 150 ~~~Y~asKaav~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~---~~~~~~~~~~~~~~~~~~p--------lg~R~ 218 (258)
T 4gkb_A 150 TSGYCASKGAQLALTREWAVALREHGVRVNAVIPAEVMTPLYRNW---IATFEDPEAKLAEIAAKVP--------LGRRF 218 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCSCC--------------CHHHHHHTTCT--------TTTSC
T ss_pred chHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCChhHhhh---hhcccChHHHHHHHHhcCC--------CCCCC
Confidence 2679999999888887665 799999999999987654211 1000000111111111110 01246
Q ss_pred ccHHHHHHHHHHHHHhhh
Q psy17528 345 VPGDRVINAMAALAWYFL 362 (366)
Q Consensus 345 v~vdDva~ai~~~~~~~~ 362 (366)
...+|+|+++++++...+
T Consensus 219 g~peeiA~~v~fLaS~~a 236 (258)
T 4gkb_A 219 TTPDEIADTAVFLLSPRA 236 (258)
T ss_dssp BCHHHHHHHHHHHHSGGG
T ss_pred cCHHHHHHHHHHHhCchh
Confidence 778999999999886543
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=8.4e-16 Score=142.92 Aligned_cols=211 Identities=15% Similarity=0.092 Sum_probs=140.0
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHH---hCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLR---CCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGIT 122 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~---~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (366)
+++++++||||+|+||.+++++|++ .| ++|++++|+... .+.+.+. +...
T Consensus 4 l~~k~~lVTGas~gIG~~ia~~l~~~~~~G---~~V~~~~r~~~~---~~~~~~~--------l~~~------------- 56 (259)
T 1oaa_A 4 LGCAVCVLTGASRGFGRALAPQLARLLSPG---SVMLVSARSESM---LRQLKEE--------LGAQ------------- 56 (259)
T ss_dssp CBSEEEEESSCSSHHHHHHHHHHHTTBCTT---CEEEEEESCHHH---HHHHHHH--------HHHH-------------
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHhhcCC---CeEEEEeCCHHH---HHHHHHH--------HHhh-------------
Confidence 5688999999999999999999999 78 899999997421 1111111 1110
Q ss_pred cccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh---------CcC--EEEEcCcccC------
Q psy17528 123 HRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS---------QTT--IIFHIAATVR------ 185 (366)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~---------~~d--~Vih~a~~~~------ 185 (366)
. ...++.++.+|+++.+ .+..+++ .+| ++|||||...
T Consensus 57 ------------------~--~~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~~~g~~d~~~lvnnAg~~~~~~~~~ 110 (259)
T 1oaa_A 57 ------------------Q--PDLKVVLAAADLGTEA------GVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGF 110 (259)
T ss_dssp ------------------C--TTSEEEEEECCTTSHH------HHHHHHHHHHHSCCCTTCCEEEEEECCCCCCCCSSCG
T ss_pred ------------------C--CCCeEEEEecCCCCHH------HHHHHHHHHHhccccccCCccEEEECCcccCCCCcch
Confidence 0 0246889999999976 5555443 358 9999999642
Q ss_pred ----hhhhHHHHHHHHHHHHHHHHHHHHhc---C--CCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchH
Q psy17528 186 ----FDEHIRTAYNINVKGTQTILALAKRM---K--GLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDE 256 (366)
Q Consensus 186 ----~~~~~~~~~~~nv~~~~~ll~~a~~~---~--~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~ 256 (366)
....++..+++|+.++..+.+.+.+. . +..+||++||..++....
T Consensus 111 ~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-------------------------- 164 (259)
T 1oaa_A 111 LNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQPYK-------------------------- 164 (259)
T ss_dssp GGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTSCCT--------------------------
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchhcCCCC--------------------------
Confidence 12456789999999999999988653 1 235799999987652210
Q ss_pred HHHhhhhcccCCCCchHHHHHHHHHHHHHHhc---CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCccee
Q psy17528 257 EIALLNEHIIGGKPNSYTLTKATAEDLVRQVG---HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRV 333 (366)
Q Consensus 257 ~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~---~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 333 (366)
....|+.+|...+.+.+... .++.++.+.||.|-.+... ........ ..........
T Consensus 165 ------------~~~~Y~asKaa~~~~~~~la~e~~~i~vn~v~PG~v~T~~~~---~~~~~~~~-~~~~~~~~~~---- 224 (259)
T 1oaa_A 165 ------------GWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDNDMQQ---LARETSKD-PELRSKLQKL---- 224 (259)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSHHHH---HHHHHCSC-HHHHHHHHHH----
T ss_pred ------------CccHHHHHHHHHHHHHHHHHhhCCCceEEEecCCCcCcchHH---HHhhccCC-hhHHHHHHHh----
Confidence 11689999999999998776 3588899999987653210 00000000 0000000000
Q ss_pred ecCCCCcccCcccHHHHHHHHHHHHHh
Q psy17528 334 VQTDPNISMDVVPGDRVINAMAALAWY 360 (366)
Q Consensus 334 l~~~~~~~~~~v~vdDva~ai~~~~~~ 360 (366)
.....+...+|+|++++.++..
T Consensus 225 -----~p~~~~~~p~dvA~~v~~l~~~ 246 (259)
T 1oaa_A 225 -----KSDGALVDCGTSAQKLLGLLQK 246 (259)
T ss_dssp -----HHTTCSBCHHHHHHHHHHHHHH
T ss_pred -----hhcCCcCCHHHHHHHHHHHHhh
Confidence 0123478999999999998864
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.2e-14 Score=134.73 Aligned_cols=211 Identities=13% Similarity=0.101 Sum_probs=144.8
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++|+++||||++.||.++++.|.+.| .+|++.+|+... .+.+.+. ++.
T Consensus 4 sL~gKvalVTGas~GIG~aiA~~la~~G---a~Vv~~~~~~~~---~~~~~~~--------i~~---------------- 53 (254)
T 4fn4_A 4 SLKNKVVIVTGAGSGIGRAIAKKFALND---SIVVAVELLEDR---LNQIVQE--------LRG---------------- 53 (254)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHH--------HHH----------------
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcC---CEEEEEECCHHH---HHHHHHH--------HHh----------------
Confidence 4689999999999999999999999999 899999997432 1222221 111
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC----h----hhh
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR----F----DEH 189 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~----~----~~~ 189 (366)
...++.++.+|+++++ ++..+++ ++|++|||||... + .+.
T Consensus 54 -------------------~g~~~~~~~~Dvt~~~------~v~~~~~~~~~~~G~iDiLVNNAGi~~~~~~~~~~~~e~ 108 (254)
T 4fn4_A 54 -------------------MGKEVLGVKADVSKKK------DVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDEL 108 (254)
T ss_dssp -------------------TTCCEEEEECCTTSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCTTCCGGGCCHHH
T ss_pred -------------------cCCcEEEEEccCCCHH------HHHHHHHHHHHHcCCCCEEEECCcccCCCCChhhCCHHH
Confidence 2357889999999987 6666553 6899999999642 1 246
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 190 IRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 190 ~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
++..+++|+.++..+.+.+.+. .+-.++|.+||........
T Consensus 109 ~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~~g~~~~~------------------------------------ 152 (254)
T 4fn4_A 109 WERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIRGGF------------------------------------ 152 (254)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCSSS------------------------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEechhhcCCCC------------------------------------
Confidence 7889999999988887765431 2456899999987542211
Q ss_pred CCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcc
Q psy17528 267 GGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNIS 341 (366)
Q Consensus 267 ~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~ 341 (366)
....|+.+|.....+.+... +|++++.+-||.|-.+....... . . ........... . ..
T Consensus 153 --~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~--~--~--~~~~~~~~~~~----~----~~ 216 (254)
T 4fn4_A 153 --AGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGSSK--P--S--ELGMRTLTKLM----S----LS 216 (254)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSCTTSCSS--C--C--HHHHHHHHHHH----T----TC
T ss_pred --CChHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCCCCcccccccC--C--c--HHHHHHHHhcC----C----CC
Confidence 11679999998888877665 79999999999998764321110 0 0 00111111100 0 01
Q ss_pred cCcccHHHHHHHHHHHHHhhh
Q psy17528 342 MDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 342 ~~~v~vdDva~ai~~~~~~~~ 362 (366)
.-+...+|+|++++.++...+
T Consensus 217 ~R~g~pediA~~v~fLaSd~a 237 (254)
T 4fn4_A 217 SRLAEPEDIANVIVFLASDEA 237 (254)
T ss_dssp CCCBCHHHHHHHHHHHHSGGG
T ss_pred CCCcCHHHHHHHHHHHhCchh
Confidence 235678999999999886543
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-14 Score=136.69 Aligned_cols=214 Identities=15% Similarity=0.070 Sum_probs=145.0
Q ss_pred cccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccc
Q psy17528 41 PIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIG 120 (366)
Q Consensus 41 ~~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (366)
.+.+.+++|++|||||++.||.++++.|.+.| .+|++.+|+.+ ++.+...+
T Consensus 22 ~Ms~rL~gKvalVTGas~GIG~aiA~~la~~G---a~V~i~~r~~~------~l~~~~~~-------------------- 72 (273)
T 4fgs_A 22 SMTQRLNAKIAVITGATSGIGLAAAKRFVAEG---ARVFITGRRKD------VLDAAIAE-------------------- 72 (273)
T ss_dssp ---CTTTTCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHHHHH--------------------
T ss_pred hhcchhCCCEEEEeCcCCHHHHHHHHHHHHCC---CEEEEEECCHH------HHHHHHHH--------------------
Confidence 34456889999999999999999999999999 89999999742 22221110
Q ss_pred cccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------h
Q psy17528 121 ITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------F 186 (366)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~ 186 (366)
...++..+.+|+++.+ ++..+++ ++|++|||||... .
T Consensus 73 -----------------------~g~~~~~~~~Dv~~~~------~v~~~~~~~~~~~G~iDiLVNNAG~~~~~~~~~~~ 123 (273)
T 4fgs_A 73 -----------------------IGGGAVGIQADSANLA------ELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLGEVT 123 (273)
T ss_dssp -----------------------HCTTCEEEECCTTCHH------HHHHHHHHHHHHHSCEEEEEECCCCCCCCCTTSCC
T ss_pred -----------------------cCCCeEEEEecCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhcc
Confidence 1246678899999987 6665553 6799999999743 2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcc
Q psy17528 187 DEHIRTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHI 265 (366)
Q Consensus 187 ~~~~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (366)
.+.++..+++|+.++..+.+.+.+. ....++|.+||.......
T Consensus 124 ~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~~~~------------------------------------ 167 (273)
T 4fgs_A 124 EEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGSTGT------------------------------------ 167 (273)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGGSCC------------------------------------
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhccCC------------------------------------
Confidence 4577889999999999998887653 223579999998654221
Q ss_pred cCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccch-HHHHHHHHhcCcceeecCCCC
Q psy17528 266 IGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNG-VMALALGAGTGLIRVVQTDPN 339 (366)
Q Consensus 266 ~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~l~~~~~ 339 (366)
+....|+.+|.....+.+... +|++++.|.||.|..+...... ..... ...+........
T Consensus 168 --~~~~~Y~asKaav~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~---~~~~~~~~~~~~~~~~~~--------- 233 (273)
T 4fgs_A 168 --PAFSVYAASKAALRSFARNWILDLKDRGIRINTLSPGPTETTGLVELA---GKDPVQQQGLLNALAAQV--------- 233 (273)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHTTTSCEEEEEEEECSBCC------------CHHHHHHHHHHHHHHS---------
T ss_pred --CCchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHhh---ccCchhhHHHHHHHHhcC---------
Confidence 112679999999988887765 7899999999999876432211 00110 011111221111
Q ss_pred cccCcccHHHHHHHHHHHHHhhh
Q psy17528 340 ISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 340 ~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
...-+...+|+|++++.++...+
T Consensus 234 PlgR~g~peeiA~~v~FLaSd~a 256 (273)
T 4fgs_A 234 PMGRVGRAEEVAAAALFLASDDS 256 (273)
T ss_dssp TTSSCBCHHHHHHHHHHHHSGGG
T ss_pred CCCCCcCHHHHHHHHHHHhCchh
Confidence 12236678999999999886543
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-14 Score=147.34 Aligned_cols=207 Identities=14% Similarity=0.094 Sum_probs=141.5
Q ss_pred ccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccc
Q psy17528 42 IQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGI 121 (366)
Q Consensus 42 ~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (366)
....+++++++||||+|.||.+++++|.+.| .+|++++|+.. .+.+.+....
T Consensus 207 ~~~~l~gk~~LVTGgsgGIG~aiA~~La~~G---a~Vvl~~r~~~----~~~l~~~~~~--------------------- 258 (454)
T 3u0b_A 207 WDKPLDGKVAVVTGAARGIGATIAEVFARDG---ATVVAIDVDGA----AEDLKRVADK--------------------- 258 (454)
T ss_dssp TTSTTTTCEEEESSCSSHHHHHHHHHHHHTT---CEEEEEECGGG----HHHHHHHHHH---------------------
T ss_pred cccCCCCCEEEEeCCchHHHHHHHHHHHHCC---CEEEEEeCCcc----HHHHHHHHHH---------------------
Confidence 3345678999999999999999999999998 78999988642 2222221111
Q ss_pred ccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------C-cCEEEEcCcccC-------h
Q psy17528 122 THRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------Q-TTIIFHIAATVR-------F 186 (366)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~-~d~Vih~a~~~~-------~ 186 (366)
..+.++.+|+++.+ .+..+++ + +|+||||||... .
T Consensus 259 ------------------------~~~~~~~~Dvtd~~------~v~~~~~~~~~~~g~~id~lV~nAGv~~~~~~~~~~ 308 (454)
T 3u0b_A 259 ------------------------VGGTALTLDVTADD------AVDKITAHVTEHHGGKVDILVNNAGITRDKLLANMD 308 (454)
T ss_dssp ------------------------HTCEEEECCTTSTT------HHHHHHHHHHHHSTTCCSEEEECCCCCCCCCGGGCC
T ss_pred ------------------------cCCeEEEEecCCHH------HHHHHHHHHHHHcCCCceEEEECCcccCCCccccCC
Confidence 13468899999987 6665553 3 899999999753 2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhh
Q psy17528 187 DEHIRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNE 263 (366)
Q Consensus 187 ~~~~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 263 (366)
...++..+++|+.++..+.+.+... .+..+||++||...+....
T Consensus 309 ~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS~a~~~g~~--------------------------------- 355 (454)
T 3u0b_A 309 EKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGIAGNR--------------------------------- 355 (454)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECCHHHHHCCT---------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeChHhCCCCC---------------------------------
Confidence 3456788999999999999988753 2456899999986542211
Q ss_pred cccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCC
Q psy17528 264 HIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDP 338 (366)
Q Consensus 264 ~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~ 338 (366)
....|+.+|...+.+.+... +|++++++.||.|.++.....+... ... ....
T Consensus 356 -----g~~~YaasKaal~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~------~~~-~~~~----------- 412 (454)
T 3u0b_A 356 -----GQTNYATTKAGMIGLAEALAPVLADKGITINAVAPGFIETKMTEAIPLAT------REV-GRRL----------- 412 (454)
T ss_dssp -----TCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECSBCC----------------CHH-HHHS-----------
T ss_pred -----CCHHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEcCcccChhhhhcchhh------HHH-HHhh-----------
Confidence 11689999997777665544 7899999999999876432211100 000 0000
Q ss_pred CcccCcccHHHHHHHHHHHHHhhh
Q psy17528 339 NISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 339 ~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
.....+...+|+|++++.++....
T Consensus 413 ~~l~r~g~pedvA~~v~fL~s~~a 436 (454)
T 3u0b_A 413 NSLFQGGQPVDVAELIAYFASPAS 436 (454)
T ss_dssp BTTSSCBCHHHHHHHHHHHHCGGG
T ss_pred ccccCCCCHHHHHHHHHHHhCCcc
Confidence 112335678999999999886543
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.4e-15 Score=137.97 Aligned_cols=208 Identities=13% Similarity=0.072 Sum_probs=143.8
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|+++||||++.||.+++++|.+.| .+|++.+|+... .++..+. +..
T Consensus 7 L~gKvalVTGas~GIG~aia~~la~~G---a~Vvi~~~~~~~---~~~~~~~--------l~~----------------- 55 (255)
T 4g81_D 7 LTGKTALVTGSARGLGFAYAEGLAAAG---ARVILNDIRATL---LAESVDT--------LTR----------------- 55 (255)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEECCSCHHH---HHHHHHH--------HHH-----------------
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEECCHHH---HHHHHHH--------HHh-----------------
Confidence 579999999999999999999999999 899999996431 1111111 111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
...++.++.+|+++++ ++..+++ ++|++|||||... ..+.++
T Consensus 56 ------------------~g~~~~~~~~Dv~~~~------~v~~~~~~~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~~~ 111 (255)
T 4g81_D 56 ------------------KGYDAHGVAFDVTDEL------AIEAAFSKLDAEGIHVDILINNAGIQYRKPMVELELENWQ 111 (255)
T ss_dssp ------------------TTCCEEECCCCTTCHH------HHHHHHHHHHHTTCCCCEEEECCCCCCCCCGGGCCHHHHH
T ss_pred ------------------cCCcEEEEEeeCCCHH------HHHHHHHHHHHHCCCCcEEEECCCCCCCCChhhCCHHHHH
Confidence 1357888999999987 6666553 5799999999753 235678
Q ss_pred HHHHHHHHHHHHHHHHHHh----cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 192 TAYNINVKGTQTILALAKR----MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~----~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
..+++|+.++..+.+.+.+ ..+..++|.+||.......
T Consensus 112 ~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~~~-------------------------------------- 153 (255)
T 4g81_D 112 KVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQAAR-------------------------------------- 153 (255)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSBC--------------------------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcCCC--------------------------------------
Confidence 8999999998888776532 2345699999998764221
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
+....|+.+|.....+.+... +|++++.+-||.|..+.... ......+........ ...
T Consensus 154 ~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~-------~~~~~~~~~~~~~~~---------Pl~ 217 (255)
T 4g81_D 154 PTVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDMNTA-------LIEDKQFDSWVKSST---------PSQ 217 (255)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGHH-------HHTCHHHHHHHHHHS---------TTC
T ss_pred CCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCCchhhc-------ccCCHHHHHHHHhCC---------CCC
Confidence 112679999998888887665 79999999999998653210 000011111111111 112
Q ss_pred CcccHHHHHHHHHHHHHhhh
Q psy17528 343 DVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~~ 362 (366)
-+...+|+|++++.++...+
T Consensus 218 R~g~pediA~~v~fL~S~~a 237 (255)
T 4g81_D 218 RWGRPEELIGTAIFLSSKAS 237 (255)
T ss_dssp SCBCGGGGHHHHHHHHSGGG
T ss_pred CCcCHHHHHHHHHHHhCchh
Confidence 35667899999999875443
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=99.60 E-value=7e-14 Score=130.60 Aligned_cols=210 Identities=13% Similarity=0.056 Sum_probs=143.1
Q ss_pred cCCCCeEEEeCCcc--hHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccc
Q psy17528 45 FYKDQTIFITGATG--FLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGIT 122 (366)
Q Consensus 45 ~~~~~~ilItGatG--~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (366)
.+++|+++||||+| .||.++++.|.+.| .+|++.+|++... +++.+....
T Consensus 3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~G---a~Vvi~~r~~~~~---~~~~~~~~~---------------------- 54 (256)
T 4fs3_A 3 NLENKTYVIMGIANKRSIAFGVAKVLDQLG---AKLVFTYRKERSR---KELEKLLEQ---------------------- 54 (256)
T ss_dssp CCTTCEEEEECCCSTTCHHHHHHHHHHHTT---CEEEEEESSGGGH---HHHHHHHGG----------------------
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCC---CEEEEEECCHHHH---HHHHHHHHh----------------------
Confidence 36799999999887 89999999999999 8999999985432 222222110
Q ss_pred cccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh---------
Q psy17528 123 HRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF--------- 186 (366)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~--------- 186 (366)
....++.++.+|+++++ ++..+++ .+|++|||||....
T Consensus 55 --------------------~~~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~G~iD~lvnnAg~~~~~~~~~~~~~ 108 (256)
T 4fs3_A 55 --------------------LNQPEAHLYQIDVQSDE------EVINGFEQIGKDVGNIDGVYHSIAFANMEDLRGRFSE 108 (256)
T ss_dssp --------------------GTCSSCEEEECCTTCHH------HHHHHHHHHHHHHCCCSEEEECCCCCCGGGGTSCGGG
T ss_pred --------------------cCCCcEEEEEccCCCHH------HHHHHHHHHHHHhCCCCEEEecccccccccccccccc
Confidence 01246788999999976 5655553 68999999996421
Q ss_pred --hhhHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhh
Q psy17528 187 --DEHIRTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNE 263 (366)
Q Consensus 187 --~~~~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 263 (366)
.+.+...+++|+.+...+.+.+... ..-.++|.+||.......
T Consensus 109 ~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~~~~---------------------------------- 154 (256)
T 4fs3_A 109 TSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEFAV---------------------------------- 154 (256)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGTSCC----------------------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEeccccccCc----------------------------------
Confidence 1234556788888888877766543 233689999998654211
Q ss_pred cccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCC
Q psy17528 264 HIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDP 338 (366)
Q Consensus 264 ~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~ 338 (366)
+....|+.+|...+.+.+... +|++++.|.||.|-.+..... ..............+
T Consensus 155 ----~~~~~Y~asKaal~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~-------~~~~~~~~~~~~~~P------- 216 (256)
T 4fs3_A 155 ----QNYNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGV-------GGFNTILKEIKERAP------- 216 (256)
T ss_dssp ----TTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTC-------TTHHHHHHHHHHHST-------
T ss_pred ----ccchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCCCCChhhhhc-------cCCHHHHHHHHhcCC-------
Confidence 112679999999888877655 789999999999877543221 111222222222111
Q ss_pred CcccCcccHHHHHHHHHHHHHhhh
Q psy17528 339 NISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 339 ~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
..-+...+|+|+++++++...+
T Consensus 217 --l~R~g~peevA~~v~fL~Sd~a 238 (256)
T 4fs3_A 217 --LKRNVDQVEVGKTAAYLLSDLS 238 (256)
T ss_dssp --TSSCCCHHHHHHHHHHHHSGGG
T ss_pred --CCCCcCHHHHHHHHHHHhCchh
Confidence 1235678999999999885543
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=7.6e-14 Score=130.50 Aligned_cols=194 Identities=11% Similarity=0.146 Sum_probs=138.5
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+|+||||||++.||.+++++|++.| .+|++.+|++. +..+.. .
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~G---a~V~~~~~~~~------~~~~~~---------~------------------- 44 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAG---DKVCFIDIDEK------RSADFA---------K------------------- 44 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHHH---------T-------------------
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCC---CEEEEEeCCHH------HHHHHH---------H-------------------
Confidence 4899999999999999999999999 89999999732 111111 1
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIRTA 193 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~~~ 193 (366)
...++.++.+|+++++ ++.++++ ++|++|||||... ..++++..
T Consensus 45 ----------------~~~~~~~~~~Dv~~~~------~v~~~v~~~~~~~g~iDiLVNNAG~~~~~~~~~~~~e~~~~~ 102 (247)
T 3ged_A 45 ----------------ERPNLFYFHGDVADPL------TLKKFVEYAMEKLQRIDVLVNNACRGSKGILSSLLYEEFDYI 102 (247)
T ss_dssp ----------------TCTTEEEEECCTTSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCGGGTCCHHHHHHH
T ss_pred ----------------hcCCEEEEEecCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHH
Confidence 1256788999999986 6665553 6899999999753 23567889
Q ss_pred HHHHHHHHHHHHHHHHhc--CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCc
Q psy17528 194 YNINVKGTQTILALAKRM--KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPN 271 (366)
Q Consensus 194 ~~~nv~~~~~ll~~a~~~--~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (366)
+++|+.++..+.+++.+. +.-.++|.+||..+.... +...
T Consensus 103 ~~vNl~g~~~~~~~~~~~m~~~~G~IInisS~~~~~~~--------------------------------------~~~~ 144 (247)
T 3ged_A 103 LSVGLKAPYELSRLCRDELIKNKGRIINIASTRAFQSE--------------------------------------PDSE 144 (247)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGTSCC--------------------------------------TTCH
T ss_pred HHHHhHHHHHHHHHHHHHHhhcCCcEEEEeecccccCC--------------------------------------CCCH
Confidence 999999988887765432 122689999998654221 1126
Q ss_pred hHHHHHHHHHHHHHHhc----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccH
Q psy17528 272 SYTLTKATAEDLVRQVG----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPG 347 (366)
Q Consensus 272 ~Y~~sK~~~E~~l~~~~----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~v 347 (366)
.|+.+|.....+.+... ++++++.+-||.|-.+.... +. .+..... ...-+...
T Consensus 145 ~Y~asKaal~~ltk~lA~ela~~IrVN~I~PG~i~t~~~~~---~~----------~~~~~~~---------Pl~R~g~p 202 (247)
T 3ged_A 145 AYASAKGGIVALTHALAMSLGPDVLVNCIAPGWINVTEQQE---FT----------QEDCAAI---------PAGKVGTP 202 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCCCC------CC----------HHHHHTS---------TTSSCBCH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEEecCcCCCCCcHH---HH----------HHHHhcC---------CCCCCcCH
Confidence 79999999888887766 78999999999997654321 11 1111111 12236678
Q ss_pred HHHHHHHHHHHHh
Q psy17528 348 DRVINAMAALAWY 360 (366)
Q Consensus 348 dDva~ai~~~~~~ 360 (366)
+|+|++++.++..
T Consensus 203 ediA~~v~fL~s~ 215 (247)
T 3ged_A 203 KDISNMVLFLCQQ 215 (247)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998863
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=6.7e-15 Score=137.86 Aligned_cols=164 Identities=11% Similarity=0.056 Sum_probs=122.5
Q ss_pred cCCCCeEEEeCC--cchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccc
Q psy17528 45 FYKDQTIFITGA--TGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGIT 122 (366)
Q Consensus 45 ~~~~~~ilItGa--tG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (366)
.+++|+++|||| +|+||.+++++|++.| .+|++++|+... ..+.+. .
T Consensus 4 ~l~~k~vlVTGa~~s~gIG~aia~~l~~~G---~~V~~~~r~~~~--~~~~~~------------~-------------- 52 (269)
T 2h7i_A 4 LLDGKRILVSGIITDSSIAFHIARVAQEQG---AQLVLTGFDRLR--LIQRIT------------D-------------- 52 (269)
T ss_dssp TTTTCEEEECCCSSTTSHHHHHHHHHHHTT---CEEEEEECSCHH--HHHHHH------------T--------------
T ss_pred ccCCCEEEEECCCCCCchHHHHHHHHHHCC---CEEEEEecChHH--HHHHHH------------H--------------
Confidence 367899999999 9999999999999998 889999997421 001111 1
Q ss_pred cccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh----------CcCEEEEcCcccC-------
Q psy17528 123 HRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS----------QTTIIFHIAATVR------- 185 (366)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~----------~~d~Vih~a~~~~------- 185 (366)
....++.++.+|+++.+ .+..+++ ++|++|||||...
T Consensus 53 --------------------~~~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~~~~iD~lv~nAg~~~~~~~~~~ 106 (269)
T 2h7i_A 53 --------------------RLPAKAPLLELDVQNEE------HLASLAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGIN 106 (269)
T ss_dssp --------------------TSSSCCCEEECCTTCHH------HHHHHHHHHHHHHCTTCCEEEEEECCCCCCGGGSTTS
T ss_pred --------------------hcCCCceEEEccCCCHH------HHHHHHHHHHHHhCCCCCceEEEECCccCcccccccc
Confidence 01235678899999976 6666654 7899999999653
Q ss_pred -----hhhhHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHH
Q psy17528 186 -----FDEHIRTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIA 259 (366)
Q Consensus 186 -----~~~~~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~ 259 (366)
....++..+++|+.++..+.+.+.+. ....+||++||....+. |
T Consensus 107 ~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~~~~~~-----------~------------------- 156 (269)
T 2h7i_A 107 PFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRAM-----------P------------------- 156 (269)
T ss_dssp CGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSSCC-----------T-------------------
T ss_pred ccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCcccccc-----------C-------------------
Confidence 12356778899999999999988653 11258999998653211 0
Q ss_pred hhhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccC
Q psy17528 260 LLNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPT 304 (366)
Q Consensus 260 ~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~ 304 (366)
....|+.+|...+.+.+.+. +++.+++++||.|..+
T Consensus 157 ---------~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~ 197 (269)
T 2h7i_A 157 ---------AYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTL 197 (269)
T ss_dssp ---------TTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCH
T ss_pred ---------chHHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccch
Confidence 01679999999998887765 6899999999998764
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.9e-14 Score=144.81 Aligned_cols=169 Identities=14% Similarity=0.164 Sum_probs=131.4
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
++++|||||+|+||.+++++|.+.| ..+|+++.|+.......+++.+.+..
T Consensus 239 ~~~vLITGgsgGIG~alA~~La~~G--a~~vvl~~R~~~~~~~~~~l~~~l~~--------------------------- 289 (496)
T 3mje_A 239 HGSVLVTGGTGGIGGRVARRLAEQG--AAHLVLTSRRGADAPGAAELRAELEQ--------------------------- 289 (496)
T ss_dssp CSEEEEETCSSHHHHHHHHHHHHTT--CSEEEEEESSGGGSTTHHHHHHHHHH---------------------------
T ss_pred CCEEEEECCCCchHHHHHHHHHHCC--CcEEEEEeCCCCChHHHHHHHHHHHh---------------------------
Confidence 4899999999999999999999997 24888999975443333333332221
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh------CcCEEEEcCccc-C-------hhhhHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS------QTTIIFHIAATV-R-------FDEHIRTA 193 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~------~~d~Vih~a~~~-~-------~~~~~~~~ 193 (366)
...++.++.+|++|.+ .+..+++ .+|+||||||.. . ....++..
T Consensus 290 ----------------~g~~v~~~~~Dvtd~~------~v~~~~~~i~~~g~ld~vVh~AGv~~~~~~l~~~t~e~~~~v 347 (496)
T 3mje_A 290 ----------------LGVRVTIAACDAADRE------ALAALLAELPEDAPLTAVFHSAGVAHDDAPVADLTLGQLDAL 347 (496)
T ss_dssp ----------------TTCEEEEEECCTTCHH------HHHHHHHTCCTTSCEEEEEECCCCCCSCCCTTTCCHHHHHHH
T ss_pred ----------------cCCeEEEEEccCCCHH------HHHHHHHHHHHhCCCeEEEECCcccCCCCCcccCCHHHHHHH
Confidence 2357899999999987 7888775 479999999975 2 12456788
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchH
Q psy17528 194 YNINVKGTQTILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSY 273 (366)
Q Consensus 194 ~~~nv~~~~~ll~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 273 (366)
+++|+.++..+.+++... ...+||++||........ ....|
T Consensus 348 l~~nv~g~~~L~~~~~~~-~~~~iV~~SS~a~~~g~~--------------------------------------g~~~Y 388 (496)
T 3mje_A 348 MRAKLTAARHLHELTADL-DLDAFVLFSSGAAVWGSG--------------------------------------GQPGY 388 (496)
T ss_dssp HHTTHHHHHHHHHHHTTS-CCSEEEEEEEHHHHTTCT--------------------------------------TCHHH
T ss_pred HHHHHHHHHHHHHHhhcc-CCCEEEEEeChHhcCCCC--------------------------------------CcHHH
Confidence 999999999999998876 778999999986542211 11679
Q ss_pred HHHHHHHHHHHHHhc-CCCCEEEEecCccccCCC
Q psy17528 274 TLTKATAEDLVRQVG-HELPICVLRPSIVFPTLQ 306 (366)
Q Consensus 274 ~~sK~~~E~~l~~~~-~gl~~~ilRp~~v~G~~~ 306 (366)
+.+|...+.+.++.. .|+++++|.||.+.+++.
T Consensus 389 aAaKa~ldala~~~~~~Gi~v~sV~pG~w~~~gm 422 (496)
T 3mje_A 389 AAANAYLDALAEHRRSLGLTASSVAWGTWGEVGM 422 (496)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCEEEEECEESSSCC
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECCcccCCcc
Confidence 999999999998777 899999999999887654
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.5e-14 Score=132.00 Aligned_cols=206 Identities=11% Similarity=0.071 Sum_probs=143.4
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|+++||||++.||.++++.|.+.| .+|++.+|+... ...+.+ ..
T Consensus 7 L~GKvalVTGas~GIG~aiA~~la~~G---a~Vvi~~r~~~~-~~~~~~------------~~----------------- 53 (247)
T 4hp8_A 7 LEGRKALVTGANTGLGQAIAVGLAAAG---AEVVCAARRAPD-ETLDII------------AK----------------- 53 (247)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESSCCH-HHHHHH------------HH-----------------
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHcC---CEEEEEeCCcHH-HHHHHH------------HH-----------------
Confidence 679999999999999999999999999 899999997531 111111 11
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccC-------hhhhHHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVR-------FDEHIRTAYNI 196 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~-------~~~~~~~~~~~ 196 (366)
...++.++.+|++|+. .+..+++ ++|++|||||... ..++++..+++
T Consensus 54 ------------------~g~~~~~~~~Dv~d~~------~v~~~~~~g~iDiLVNNAGi~~~~~~~~~~~~~w~~~~~v 109 (247)
T 4hp8_A 54 ------------------DGGNASALLIDFADPL------AAKDSFTDAGFDILVNNAGIIRRADSVEFSELDWDEVMDV 109 (247)
T ss_dssp ------------------TTCCEEEEECCTTSTT------TTTTSSTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred ------------------hCCcEEEEEccCCCHH------HHHHHHHhCCCCEEEECCCCCCCCCcccccHHHHHHHHHH
Confidence 1357889999999986 4444443 6899999999753 23568889999
Q ss_pred HHHHHHHHHHHHHh----cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCch
Q psy17528 197 NVKGTQTILALAKR----MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNS 272 (366)
Q Consensus 197 nv~~~~~ll~~a~~----~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (366)
|+.++..+.+.+.+ .+.-.++|.+||........ ....
T Consensus 110 Nl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~g~~--------------------------------------~~~~ 151 (247)
T 4hp8_A 110 NLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQGGI--------------------------------------RVPS 151 (247)
T ss_dssp HTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCS--------------------------------------SCHH
T ss_pred HhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCCCCC--------------------------------------CChH
Confidence 99998888775432 22356899999986542211 1167
Q ss_pred HHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccH
Q psy17528 273 YTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPG 347 (366)
Q Consensus 273 Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~v 347 (366)
|+.+|.....+.+... +|++++.+-||.|-.+.... +.............. ...-+...
T Consensus 152 Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~~~~~-------~~~~~~~~~~~~~~~---------PlgR~g~p 215 (247)
T 4hp8_A 152 YTAAKHGVAGLTKLLANEWAAKGINVNAIAPGYIETNNTEA-------LRADAARNKAILERI---------PAGRWGHS 215 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHH-------HHTSHHHHHHHHTTC---------TTSSCBCT
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCcchhh-------cccCHHHHHHHHhCC---------CCCCCcCH
Confidence 9999999888887655 89999999999997653210 100011111122211 12336677
Q ss_pred HHHHHHHHHHHHhhh
Q psy17528 348 DRVINAMAALAWYFL 362 (366)
Q Consensus 348 dDva~ai~~~~~~~~ 362 (366)
+|+|.+++.++...+
T Consensus 216 eeiA~~v~fLaSd~a 230 (247)
T 4hp8_A 216 EDIAGAAVFLSSAAA 230 (247)
T ss_dssp HHHHHHHHHHTSGGG
T ss_pred HHHHHHHHHHhCchh
Confidence 999999999876543
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-15 Score=146.66 Aligned_cols=178 Identities=16% Similarity=0.095 Sum_probs=117.3
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCC----CccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCP----QIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~----~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
.++|+||||+||||++++..|++.|. +...|.++++.... ++..... ..+.
T Consensus 4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~----~~~~g~~-----~dl~---------------- 58 (327)
T 1y7t_A 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAM----KALEGVV-----MELE---------------- 58 (327)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGH----HHHHHHH-----HHHH----------------
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCch----hhccchh-----hhhh----------------
Confidence 35899999999999999999999862 12378888875310 1110000 0000
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh-hhhHHHHHHHHHHHHH
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF-DEHIRTAYNINVKGTQ 202 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~-~~~~~~~~~~nv~~~~ 202 (366)
. ..+.++ +|+.+.. .+.+.++++|+|||+||.... .....++++.|+.++.
T Consensus 59 -----------------~----~~~~~~-~di~~~~------~~~~a~~~~D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~ 110 (327)
T 1y7t_A 59 -----------------D----CAFPLL-AGLEATD------DPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFT 110 (327)
T ss_dssp -----------------T----TTCTTE-EEEEEES------CHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHH
T ss_pred -----------------c----cccccc-CCeEecc------ChHHHhCCCCEEEECCCcCCCCCCCHHHHHHHHHHHHH
Confidence 0 001122 4666544 466778899999999997653 3456778999999999
Q ss_pred HHHHHHHhcCCC-cEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHH
Q psy17528 203 TILALAKRMKGL-KSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAE 281 (366)
Q Consensus 203 ~ll~~a~~~~~~-~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E 281 (366)
++++++.+..+. .+++++|+.... ..+..++.. +++ +..+.|+.+|+..|
T Consensus 111 ~l~~a~~~~~~~~~~vvv~snp~~~--~~~~~~~~~-~~~--------------------------~p~~~yg~tkl~~e 161 (327)
T 1y7t_A 111 EQGRALAEVAKKDVKVLVVGNPANT--NALIAYKNA-PGL--------------------------NPRNFTAMTRLDHN 161 (327)
T ss_dssp HHHHHHHHHSCTTCEEEECSSSHHH--HHHHHHHTC-TTS--------------------------CGGGEEECCHHHHH
T ss_pred HHHHHHHhhcCCCeEEEEeCCchhh--hHHHHHHHc-CCC--------------------------ChhheeccchHHHH
Confidence 999999986314 377777764210 001111100 000 11167999999999
Q ss_pred HHHHHhc--CCCCEEEEecCccccCCCC
Q psy17528 282 DLVRQVG--HELPICVLRPSIVFPTLQE 307 (366)
Q Consensus 282 ~~l~~~~--~gl~~~ilRp~~v~G~~~~ 307 (366)
++...+. .+++.+++|+++|||+...
T Consensus 162 r~~~~~a~~~g~~~~~vr~~~V~G~h~~ 189 (327)
T 1y7t_A 162 RAKAQLAKKTGTGVDRIRRMTVWGNHSS 189 (327)
T ss_dssp HHHHHHHHHHTCCGGGEECCEEEBCSST
T ss_pred HHHHHHHHHhCcChhheeeeEEEcCCCC
Confidence 9987766 6899999999999998753
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.9e-14 Score=130.06 Aligned_cols=203 Identities=13% Similarity=0.027 Sum_probs=128.4
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEE-E--cCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILL-I--RTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~-~--R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
+|+++||||+|+||.+++++|++.| ++|+++ + |+.. ++.+.. ..
T Consensus 1 ~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~~~~r~~~------~~~~~~---------~~--------------- 47 (244)
T 1zmo_A 1 MVIALVTHARHFAGPAAVEALTQDG---YTVVCHDASFADAA------ERQRFE---------SE--------------- 47 (244)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTT---CEEEECCGGGGSHH------HHHHHH---------HH---------------
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC---CEEEEecCCcCCHH------HHHHHH---------HH---------------
Confidence 4789999999999999999999999 889998 5 8632 111111 00
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH---hCcCEEEEcCcccCh----------hhhHH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI---SQTTIIFHIAATVRF----------DEHIR 191 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~---~~~d~Vih~a~~~~~----------~~~~~ 191 (366)
. ...++. |..+.. ..+.++. .++|++|||||.... ...++
T Consensus 48 ----------------~----~~~~~~--~~~~v~-----~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~ 100 (244)
T 1zmo_A 48 ----------------N----PGTIAL--AEQKPE-----RLVDATLQHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIR 100 (244)
T ss_dssp ----------------S----TTEEEC--CCCCGG-----GHHHHHGGGSSCEEEEEECCCCCTTGGGCCSTTCCHHHHH
T ss_pred ----------------h----CCCccc--CHHHHH-----HHHHHHHHHcCCCCEEEECCCcCCCCCCCCcccCCHHHHH
Confidence 0 011111 333222 1222332 268999999996533 24567
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
..+++|+.++..+.+++.+. .+..+||++||..++....
T Consensus 101 ~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~-------------------------------------- 142 (244)
T 1zmo_A 101 QMFEALSIFPILLLQSAIAPLRAAGGASVIFITSSVGKKPLA-------------------------------------- 142 (244)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCCT--------------------------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhCCCCC--------------------------------------
Confidence 78999999999988876431 2567999999986653210
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
....|+.+|...+.+.+... +++.+++++||.|..+.... ...+.. .......... .. ....
T Consensus 143 ~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~----~~~~~~-~~~~~~~~~~---~~-----p~~r 209 (244)
T 1zmo_A 143 YNPLYGPARAATVALVESAAKTLSRDGILLYAIGPNFFNNPTYFP----TSDWEN-NPELRERVDR---DV-----PLGR 209 (244)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCBTTTBC----HHHHHH-CHHHHHHHHH---HC-----TTCS
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCcccc----cccccc-hHHHHHHHhc---CC-----CCCC
Confidence 11679999999999887765 58999999999997763200 000000 0011111110 00 1123
Q ss_pred cccHHHHHHHHHHHHHhh
Q psy17528 344 VVPGDRVINAMAALAWYF 361 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~~ 361 (366)
+...+|+|++++.++...
T Consensus 210 ~~~pe~vA~~v~~l~s~~ 227 (244)
T 1zmo_A 210 LGRPDEMGALITFLASRR 227 (244)
T ss_dssp CBCHHHHHHHHHHHHTTT
T ss_pred CcCHHHHHHHHHHHcCcc
Confidence 678999999999988754
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=4e-14 Score=133.31 Aligned_cols=157 Identities=14% Similarity=0.158 Sum_probs=118.7
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|++|||||++.||.++++.|.+.| .+|++.+|+....
T Consensus 9 L~GK~alVTGas~GIG~aia~~la~~G---a~V~~~~r~~~~~------------------------------------- 48 (261)
T 4h15_A 9 LRGKRALITAGTKGAGAATVSLFLELG---AQVLTTARARPEG------------------------------------- 48 (261)
T ss_dssp CTTCEEEESCCSSHHHHHHHHHHHHTT---CEEEEEESSCCTT-------------------------------------
T ss_pred CCCCEEEEeccCcHHHHHHHHHHHHcC---CEEEEEECCchhC-------------------------------------
Confidence 579999999999999999999999999 8999999975321
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC---------hhhh
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR---------FDEH 189 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~---------~~~~ 189 (366)
..+..++.+|+++.+ ++..+++ ++|++|||||... ..++
T Consensus 49 -------------------~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~ 103 (261)
T 4h15_A 49 -------------------LPEELFVEADLTTKE------GCAIVAEATRQRLGGVDVIVHMLGGSSAAGGGFSALSDDD 103 (261)
T ss_dssp -------------------SCTTTEEECCTTSHH------HHHHHHHHHHHHTSSCSEEEECCCCCCCCSSCGGGCCHHH
T ss_pred -------------------CCcEEEEEcCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCccCCCCcccCCHHH
Confidence 112236789999976 5555543 6899999999632 1346
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 190 IRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 190 ~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
++..+++|+.++..+.+.+.+. .+-.++|.+||....... |
T Consensus 104 ~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Iv~isS~~~~~~~----------~-------------------------- 147 (261)
T 4h15_A 104 WYNELSLNLFAAVRLDRQLVPDMVARGSGVVVHVTSIQRVLPL----------P-------------------------- 147 (261)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC----------T--------------------------
T ss_pred HHHHHHHHhHHHHHHHHhhchhhhhcCCceEEEEEehhhccCC----------C--------------------------
Confidence 7889999999988877765431 245689999997654211 0
Q ss_pred CCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccC
Q psy17528 267 GGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPT 304 (366)
Q Consensus 267 ~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~ 304 (366)
.....|+.+|...+.+.+... +|++++.+.||.|-.+
T Consensus 148 -~~~~~Y~asKaal~~lt~~lA~Ela~~gIrVN~V~PG~i~T~ 189 (261)
T 4h15_A 148 -ESTTAYAAAKAALSTYSKAMSKEVSPKGVRVVRVSPGWIETE 189 (261)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCH
T ss_pred -CccHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEeCCCcCCc
Confidence 011579999999888887665 7899999999998765
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=5.7e-14 Score=135.57 Aligned_cols=163 Identities=13% Similarity=0.177 Sum_probs=112.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC------CcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG------STSITQRVYNYFNDAVFDRMRLECPNYADKVDI 119 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (366)
+++|+++||||+|+||.+++++|++.| .+|++.+|... .....+.+.+. +...
T Consensus 7 l~gk~~lVTGas~GIG~~~a~~La~~G---a~Vv~~~~~~~~~~~~R~~~~~~~~~~~--------l~~~---------- 65 (319)
T 1gz6_A 7 FDGRVVLVTGAGGGLGRAYALAFAERG---ALVVVNDLGGDFKGVGKGSSAADKVVEE--------IRRR---------- 65 (319)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEECCCBCTTSCBCCSHHHHHHHHH--------HHHT----------
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEcCCcccccccCCHHHHHHHHHH--------HHhh----------
Confidence 568999999999999999999999999 88988766421 11111111111 1110
Q ss_pred ccccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH-------hCcCEEEEcCcccCh------
Q psy17528 120 GITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI-------SQTTIIFHIAATVRF------ 186 (366)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~-------~~~d~Vih~a~~~~~------ 186 (366)
.. ...+|+.+.+ .+..++ .++|++|||||....
T Consensus 66 -------------------------~~---~~~~D~~~~~------~~~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~ 111 (319)
T 1gz6_A 66 -------------------------GG---KAVANYDSVE------AGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRI 111 (319)
T ss_dssp -------------------------TC---EEEEECCCGG------GHHHHHHHHHHHTSCCCEEEECCCCCCCCCGGGC
T ss_pred -------------------------CC---eEEEeCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhC
Confidence 01 1246888765 344333 268999999997532
Q ss_pred -hhhHHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhh
Q psy17528 187 -DEHIRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLN 262 (366)
Q Consensus 187 -~~~~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 262 (366)
...++..+++|+.++..+.+++.+. .+..+||++||........
T Consensus 112 ~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~grIV~vsS~~~~~~~~-------------------------------- 159 (319)
T 1gz6_A 112 SDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGNF-------------------------------- 159 (319)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCT--------------------------------
T ss_pred CHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccCCC--------------------------------
Confidence 2356778999999988888876321 2457999999975431110
Q ss_pred hcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCcc
Q psy17528 263 EHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIV 301 (366)
Q Consensus 263 ~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v 301 (366)
....|+.+|...+.+.+.+. +|+.+++++||.+
T Consensus 160 ------~~~~Y~aSK~a~~~~~~~la~el~~~gI~vn~v~PG~~ 197 (319)
T 1gz6_A 160 ------GQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAG 197 (319)
T ss_dssp ------TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECC
T ss_pred ------CCHHHHHHHHHHHHHHHHHHHHhcccCEEEEEEeCCCc
Confidence 01679999999999887765 5899999999986
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-13 Score=141.70 Aligned_cols=169 Identities=14% Similarity=0.117 Sum_probs=124.9
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEE-EcCCCC----------cCHHHHHHHHhhhhhhhhhhhcCCC
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILL-IRTRGS----------TSITQRVYNYFNDAVFDRMRLECPN 112 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~-~R~~~~----------~~~~~~i~~~~~~~~~~~~~~~~~~ 112 (366)
.+.+++++|||||+|.||.+++++|.+.|. ..|+++ .|+... ....+.+.+. +..
T Consensus 247 ~~~~~~~vLITGgsgGIG~~lA~~La~~G~--~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~--------l~~---- 312 (525)
T 3qp9_A 247 WWQADGTVLVTGAEEPAAAEAARRLARDGA--GHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAE--------LAD---- 312 (525)
T ss_dssp SSCTTSEEEESSTTSHHHHHHHHHHHHHTC--CEEEEEECCCC---------------CHHHHHH--------HHH----
T ss_pred eecCCCEEEEECCCCcHHHHHHHHHHHcCC--CEEEEEeCCCCCCccccccccccCHHHHHHHHH--------HHh----
Confidence 445689999999999999999999999982 346666 787532 1111111111 111
Q ss_pred CCCccccccccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhC------cCEEEEcCcccC-
Q psy17528 113 YADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQ------TTIIFHIAATVR- 185 (366)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~------~d~Vih~a~~~~- 185 (366)
...++.++.+|++|.+ .+..+++. +|+||||||...
T Consensus 313 -------------------------------~g~~v~~~~~Dvtd~~------~v~~~~~~i~~~g~id~vVh~AGv~~~ 355 (525)
T 3qp9_A 313 -------------------------------LGATATVVTCDLTDAE------AAARLLAGVSDAHPLSAVLHLPPTVDS 355 (525)
T ss_dssp -------------------------------HTCEEEEEECCTTSHH------HHHHHHHTSCTTSCEEEEEECCCCCCC
T ss_pred -------------------------------cCCEEEEEECCCCCHH------HHHHHHHHHHhcCCCcEEEECCcCCCC
Confidence 1357899999999987 78887764 699999999753
Q ss_pred ------hhhhHHHHHHHHHHHHHHHHHHHHhcC---C-CcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcch
Q psy17528 186 ------FDEHIRTAYNINVKGTQTILALAKRMK---G-LKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASD 255 (366)
Q Consensus 186 ------~~~~~~~~~~~nv~~~~~ll~~a~~~~---~-~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~ 255 (366)
....++..+++|+.|+..+.+++.... + ..+||++||..+.....
T Consensus 356 ~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS~a~~~g~~------------------------- 410 (525)
T 3qp9_A 356 EPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSSVAAIWGGA------------------------- 410 (525)
T ss_dssp CCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEEGGGTTCCT-------------------------
T ss_pred CchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECCHHHcCCCC-------------------------
Confidence 234567889999999999999887651 1 67999999986542211
Q ss_pred HHHHhhhhcccCCCCchHHHHHHHHHHHHHHhc-CCCCEEEEecCcc
Q psy17528 256 EEIALLNEHIIGGKPNSYTLTKATAEDLVRQVG-HELPICVLRPSIV 301 (366)
Q Consensus 256 ~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-~gl~~~ilRp~~v 301 (366)
....|+.+|...+.+..+.. .|+++++|.||.+
T Consensus 411 -------------g~~~YaaaKa~l~~lA~~~~~~gi~v~sI~pG~~ 444 (525)
T 3qp9_A 411 -------------GQGAYAAGTAFLDALAGQHRADGPTVTSVAWSPW 444 (525)
T ss_dssp -------------TCHHHHHHHHHHHHHHTSCCSSCCEEEEEEECCB
T ss_pred -------------CCHHHHHHHHHHHHHHHHHHhCCCCEEEEECCcc
Confidence 11679999999999887666 8999999999998
|
| >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=7e-12 Score=118.73 Aligned_cols=136 Identities=13% Similarity=0.032 Sum_probs=90.9
Q ss_pred CcCEEEEcCcccC---------hhhhHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCC
Q psy17528 173 QTTIIFHIAATVR---------FDEHIRTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFT 242 (366)
Q Consensus 173 ~~d~Vih~a~~~~---------~~~~~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~ 242 (366)
++|++|||||... ....++..+++|+.++..+++++.+. ....++|++||...+... |
T Consensus 119 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~----------~-- 186 (297)
T 1d7o_A 119 SIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHFLPIMNPGGASISLTYIASERII----------P-- 186 (297)
T ss_dssp CEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSCC----------T--
T ss_pred CCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhccCceEEEEeccccccCC----------C--
Confidence 6899999998531 12456778999999999999988753 112589999997654211 0
Q ss_pred hHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHHhc------CCCCEEEEecCccccCCCCCCCcccccc
Q psy17528 243 AEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVG------HELPICVLRPSIVFPTLQEPMPLWIKGF 316 (366)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~------~gl~~~ilRp~~v~G~~~~~~~~~~~~~ 316 (366)
.....|+.+|...+.+.+.+. +|+.+++++||.|.++...... .
T Consensus 187 -------------------------~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~vn~v~PG~v~T~~~~~~~-----~ 236 (297)
T 1d7o_A 187 -------------------------GYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGSRAAKAIG-----F 236 (297)
T ss_dssp -------------------------TCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCBCCCSSCCS-----H
T ss_pred -------------------------CcchHHHHHHHHHHHHHHHHHHHhCcccCcEEEEEeccccccchhhhcc-----c
Confidence 001369999999998886654 3899999999999987643210 0
Q ss_pred chHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhh
Q psy17528 317 NGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 317 ~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
...+........ ....+...+|+|++++.++...
T Consensus 237 --~~~~~~~~~~~~---------p~~r~~~pedvA~~v~~l~s~~ 270 (297)
T 1d7o_A 237 --IDTMIEYSYNNA---------PIQKTLTADEVGNAAAFLVSPL 270 (297)
T ss_dssp --HHHHHHHHHHHS---------SSCCCBCHHHHHHHHHHHTSGG
T ss_pred --cHHHHHHhhccC---------CCCCCCCHHHHHHHHHHHhCcc
Confidence 011111111111 1123678999999999988643
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.4e-12 Score=133.63 Aligned_cols=165 Identities=15% Similarity=0.142 Sum_probs=109.6
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCC------cCHHHHHHHHhhhhhhhhhhhcCCCCCCcc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGS------TSITQRVYNYFNDAVFDRMRLECPNYADKV 117 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 117 (366)
..+++|+++||||+|+||.+++++|++.| .+|++++|.... ....+.+.+. +...
T Consensus 15 ~~l~gk~~lVTGas~GIG~aiA~~La~~G---a~Vv~~~r~~~~~~~~~~~~~~~~~~~~--------i~~~-------- 75 (613)
T 3oml_A 15 LRYDGRVAVVTGAGAGLGREYALLFAERG---AKVVVNDLGGTHSGDGASQRAADIVVDE--------IRKA-------- 75 (613)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEC--------------CHHHHHHH--------HHHT--------
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCcccccccCCHHHHHHHHHH--------HHHh--------
Confidence 45679999999999999999999999999 899999883211 1111111111 1110
Q ss_pred ccccccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-----
Q psy17528 118 DIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR----- 185 (366)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~----- 185 (366)
... ..+|+.+.+ ++..+++ .+|++|||||...
T Consensus 76 ---------------------------~~~---~~~D~~d~~------~~~~~~~~~~~~~g~iDiLVnnAGi~~~~~~~ 119 (613)
T 3oml_A 76 ---------------------------GGE---AVADYNSVI------DGAKVIETAIKAFGRVDILVNNAGILRDRSLV 119 (613)
T ss_dssp ---------------------------TCC---EEECCCCGG------GHHHHHC----------CEECCCCCCCCCCST
T ss_pred ---------------------------CCe---EEEEeCCHH------HHHHHHHHHHHHCCCCcEEEECCCCCCCCCcc
Confidence 111 236887765 4555553 5799999999753
Q ss_pred --hhhhHHHHHHHHHHHHHHHHHHHHh---cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHh
Q psy17528 186 --FDEHIRTAYNINVKGTQTILALAKR---MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIAL 260 (366)
Q Consensus 186 --~~~~~~~~~~~nv~~~~~ll~~a~~---~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~ 260 (366)
....++..+++|+.++..+.+++.. ..+..+||++||..+.....
T Consensus 120 ~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~g~IV~isS~a~~~~~~------------------------------ 169 (613)
T 3oml_A 120 KTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSNSGIYGNF------------------------------ 169 (613)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCHHHHHCCT------------------------------
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcCCCC------------------------------
Confidence 2346778999999999999887732 12557999999975542110
Q ss_pred hhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCcc
Q psy17528 261 LNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIV 301 (366)
Q Consensus 261 ~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v 301 (366)
....|+.+|...+.+.+.+. +|+.++.+.|+.+
T Consensus 170 --------~~~~Y~asKaal~~lt~~la~e~~~~gI~vn~v~Pg~~ 207 (613)
T 3oml_A 170 --------GQVNYTAAKMGLIGLANTVAIEGARNNVLCNVIVPTAA 207 (613)
T ss_dssp --------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC--
T ss_pred --------CChHHHHHHHHHHHHHHHHHHHhCccCeEEEEEECCCC
Confidence 11679999999998887765 6899999999864
|
| >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella} | Back alignment and structure |
|---|
Probab=99.26 E-value=4e-11 Score=114.89 Aligned_cols=142 Identities=13% Similarity=-0.036 Sum_probs=73.7
Q ss_pred CcCEEEEcCcccC---------hhhhHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCC
Q psy17528 173 QTTIIFHIAATVR---------FDEHIRTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFT 242 (366)
Q Consensus 173 ~~d~Vih~a~~~~---------~~~~~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~ 242 (366)
.+|++|||||... ....++..+++|+.++..+.+.+.+. ....+||++||....... |
T Consensus 133 ~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~----------~-- 200 (319)
T 2ptg_A 133 QIDILVHSLANGPEVTKPLLQTSRKGYLAAVSSSSYSFVSLLQHFLPLMKEGGSALALSYIASEKVI----------P-- 200 (319)
T ss_dssp CEEEEEEEEECCSSSSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEECC------------------
T ss_pred CCCEEEECCccCCCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCceEEEEecccccccc----------C--
Confidence 6899999998531 12356778999999999999988753 112589999997654211 0
Q ss_pred hHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHHhc------CCCCEEEEecCccccCCCCCCCcccccc
Q psy17528 243 AEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVG------HELPICVLRPSIVFPTLQEPMPLWIKGF 316 (366)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~------~gl~~~ilRp~~v~G~~~~~~~~~~~~~ 316 (366)
.....|+.+|...+.+.+.+. +++.+++++||.|..+........
T Consensus 201 -------------------------~~~~~Y~asKaal~~l~~~la~el~~~~gIrvn~v~PG~v~T~~~~~~~~~---- 251 (319)
T 2ptg_A 201 -------------------------GYGGGMSSAKAALESDCRTLAFEAGRARAVRVNCISAGPLKSRAASAIGKA---- 251 (319)
T ss_dssp -------------------------------------THHHHHHHHHHHHHHHCCEEEEEEECCCC--------------
T ss_pred -------------------------ccchhhHHHHHHHHHHHHHHHHHhccccCeeEEEEeeCCccChhhhhcccc----
Confidence 000369999998888776543 389999999999987643211000
Q ss_pred chHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhh
Q psy17528 317 NGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 317 ~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
. ...+...... ..........+...+|+|++++.++...
T Consensus 252 ~-~~~~~~~~~~-----~~~~~~p~~r~~~peevA~~v~~L~s~~ 290 (319)
T 2ptg_A 252 G-DKTFIDLAID-----YSEANAPLQKELESDDVGRAALFLLSPL 290 (319)
T ss_dssp ---------------------------CCCHHHHHHHHHHHTSGG
T ss_pred c-chhhHHHHHH-----HHhccCCCCCCCCHHHHHHHHHHHhCcc
Confidence 0 0000000000 0000011223678999999999988653
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=99.25 E-value=6.7e-11 Score=127.29 Aligned_cols=168 Identities=18% Similarity=0.252 Sum_probs=127.7
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHH-HhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLL-RCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll-~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
+-+++++|||||+|.||.++++.|. +.| .++|++++|+.......+.+.+.+. .
T Consensus 527 ~~~~~~~lItGg~~GlG~aiA~~la~~~G--a~~vvl~~R~~~~~~~~~~~~~~l~--------~--------------- 581 (795)
T 3slk_A 527 WDAAGTVLVTGGTGALGAEVARHLVIERG--VRNLVLVSRRGPAASGAAELVAQLT--------A--------------- 581 (795)
T ss_dssp CCTTSEEEEETTTSHHHHHHHHHHHHTSS--CCEEEEEESSGGGSTTHHHHHHHHH--------H---------------
T ss_pred cccccceeeccCCCCcHHHHHHHHHHHcC--CcEEEEeccCccchHHHHHHHHHHH--------h---------------
Confidence 4468999999999999999999998 676 3479999998543333333333221 1
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh------CcCEEEEcCcccC-------hhhhH
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS------QTTIIFHIAATVR-------FDEHI 190 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~------~~d~Vih~a~~~~-------~~~~~ 190 (366)
...++.++.+|++|.+ ++..+++ .+|+||||||... ....+
T Consensus 582 --------------------~G~~v~~~~~Dvsd~~------~v~~~~~~~~~~~~id~lVnnAGv~~~~~~~~~t~e~~ 635 (795)
T 3slk_A 582 --------------------YGAEVSLQACDVADRE------TLAKVLASIPDEHPLTAVVHAAGVLDDGVSESLTVERL 635 (795)
T ss_dssp --------------------TTCEEEEEECCTTCHH------HHHHHHHTSCTTSCEEEEEECCCCCCCCCGGGCCHHHH
T ss_pred --------------------cCCcEEEEEeecCCHH------HHHHHHHHHHHhCCCEEEEECCCcCCCCchhhCCHHHH
Confidence 1357889999999987 7887775 3699999999753 13456
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCC
Q psy17528 191 RTAYNINVKGTQTILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKP 270 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (366)
+..+++|+.|+.++.+++.. .. +||.+||..+..... ..
T Consensus 636 ~~~~~~nv~G~~~l~~~~~~--~l-~iV~~SS~ag~~g~~--------------------------------------g~ 674 (795)
T 3slk_A 636 DQVLRPKVDGARNLLELIDP--DV-ALVLFSSVSGVLGSG--------------------------------------GQ 674 (795)
T ss_dssp HHHHCCCCCHHHHHHHHSCT--TS-EEEEEEETHHHHTCS--------------------------------------SC
T ss_pred HHHHHHHHHHHHHHHHHHhh--CC-EEEEEccHHhcCCCC--------------------------------------CC
Confidence 78889999999999998743 44 899999986542211 11
Q ss_pred chHHHHHHHHHHHHHHhc-CCCCEEEEecCccccC
Q psy17528 271 NSYTLTKATAEDLVRQVG-HELPICVLRPSIVFPT 304 (366)
Q Consensus 271 ~~Y~~sK~~~E~~l~~~~-~gl~~~ilRp~~v~G~ 304 (366)
..|+.+|...+.+.++.. .|++++.|.||.+-.+
T Consensus 675 ~~YaAaka~~~alA~~~~~~Gi~v~sI~pG~v~t~ 709 (795)
T 3slk_A 675 GNYAAANSFLDALAQQRQSRGLPTRSLAWGPWAEH 709 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEEEEECCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeEEEEECCeECcc
Confidence 689999999998888877 8999999999988754
|
| >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=7.1e-11 Score=113.01 Aligned_cols=95 Identities=14% Similarity=0.019 Sum_probs=69.7
Q ss_pred CcCEEEEcCcccC---------hhhhHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCC
Q psy17528 173 QTTIIFHIAATVR---------FDEHIRTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFT 242 (366)
Q Consensus 173 ~~d~Vih~a~~~~---------~~~~~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~ 242 (366)
++|++|||||... ....++..+++|+.++..+.+.+.+. ....+||++||....... |
T Consensus 120 ~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~----------~-- 187 (315)
T 2o2s_A 120 NIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLLQHFGPIMNEGGSAVTLSYLAAERVV----------P-- 187 (315)
T ss_dssp SEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHSTTEEEEEEEEEEEEGGGTSCC----------T--
T ss_pred CCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCEEEEEecccccccC----------C--
Confidence 6899999999531 12456788999999999999988653 112589999997654211 0
Q ss_pred hHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHHhc------CCCCEEEEecCccccC
Q psy17528 243 AEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVG------HELPICVLRPSIVFPT 304 (366)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~------~gl~~~ilRp~~v~G~ 304 (366)
.....|+.+|...+.+.+.+. +|+.+++++||.|..+
T Consensus 188 -------------------------~~~~~Y~asKaal~~l~~~la~el~~~~gIrvn~v~PG~v~T~ 230 (315)
T 2o2s_A 188 -------------------------GYGGGMSSAKAALESDTRTLAWEAGQKYGVRVNAISAGPLKSR 230 (315)
T ss_dssp -------------------------TCCTTHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCCH
T ss_pred -------------------------CccHHHHHHHHHHHHHHHHHHHHhCcccCeEEEEEecccccch
Confidence 001369999998888886543 5899999999998764
|
| >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ... | Back alignment and structure |
|---|
Probab=99.21 E-value=1.7e-11 Score=118.26 Aligned_cols=183 Identities=14% Similarity=0.065 Sum_probs=115.2
Q ss_pred CCCeEEEeCCcc--hHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 47 KDQTIFITGATG--FLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 47 ~~~~ilItGatG--~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
++|+++||||++ .||.+++++|++.| .+|++..|++.. ....|-.+... .....
T Consensus 1 ~~k~~lITGas~~~GIG~aiA~~la~~G---~~Vv~~~~~~~~-~l~~r~~~~~~-----~~~~~--------------- 56 (329)
T 3lt0_A 1 NEDICFIAGIGDTNGYGWGIAKELSKRN---VKIIFGIWPPVY-NIFMKNYKNGK-----FDNDM--------------- 56 (329)
T ss_dssp CCCEEEEECCSSSSSHHHHHHHHHHHTT---CEEEEEECHHHH-HHHHHHHHTTT-----TTGGG---------------
T ss_pred CCcEEEEECCCCCCchHHHHHHHHHHCC---CEEEEEecCccc-cccccchHHHH-----HHHHH---------------
Confidence 368999999875 99999999999999 899987765310 00000000000 00000
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCC-CCHH-------------HHHHHH-------hCcCEEEEcCcc
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFG-LSAR-------------DEELLI-------SQTTIIFHIAAT 183 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~g-l~~~-------------~~~~~~-------~~~d~Vih~a~~ 183 (366)
..........+.++.+|+.+.... ...+ ++..++ ..+|++|||||.
T Consensus 57 -------------~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi 123 (329)
T 3lt0_A 57 -------------IIDKDKKMNILDMLPFDASFDTANDIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLAN 123 (329)
T ss_dssp -------------BCSSSCBCCEEEEEECCTTCSSGGGCCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCC
T ss_pred -------------HHhhcccccccccccccccccchhhhhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcc
Confidence 000111123467777888766110 0000 223222 268999999996
Q ss_pred cC---------hhhhHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhc
Q psy17528 184 VR---------FDEHIRTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHA 253 (366)
Q Consensus 184 ~~---------~~~~~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~ 253 (366)
.. ....++..+++|+.++..+.+.+... ..-.++|++||....... |
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~~~~~~----------~------------- 180 (329)
T 3lt0_A 124 AKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNIMKPQSSIISLTYHASQKVV----------P------------- 180 (329)
T ss_dssp CTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSCC----------T-------------
T ss_pred cccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeCccccCCC----------C-------------
Confidence 31 13456789999999999999987653 111589999998654211 0
Q ss_pred chHHHHhhhhcccCCCCc-hHHHHHHHHHHHHHHhc----C--CCCEEEEecCccccC
Q psy17528 254 SDEEIALLNEHIIGGKPN-SYTLTKATAEDLVRQVG----H--ELPICVLRPSIVFPT 304 (366)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~-~Y~~sK~~~E~~l~~~~----~--gl~~~ilRp~~v~G~ 304 (366)
... .|+.+|...+.+.+... . ++.++.+.||.|..+
T Consensus 181 ---------------~~~~~Y~asKaal~~~~~~la~el~~~~gI~vn~v~PG~v~T~ 223 (329)
T 3lt0_A 181 ---------------GYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKSR 223 (329)
T ss_dssp ---------------TCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCH
T ss_pred ---------------cchHHHHHHHHHHHHHHHHHHHHhCCccCeEEEEEecceeech
Confidence 113 79999999988886654 3 899999999999765
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.14 E-value=5.6e-10 Score=116.64 Aligned_cols=162 Identities=14% Similarity=0.171 Sum_probs=112.4
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++|+++||||++.||.++++.|.+.| .+|++.+|... +.+.+. +..
T Consensus 319 ~l~gkvalVTGas~GIG~a~A~~la~~G---a~Vv~~~~~~~-----~~~~~~--------i~~---------------- 366 (604)
T 2et6_A 319 SLKDKVVLITGAGAGLGKEYAKWFAKYG---AKVVVNDFKDA-----TKTVDE--------IKA---------------- 366 (604)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTT---CEEEEECSSCC-----HHHHHH--------HHH----------------
T ss_pred ccCCCeEEEECcchHHHHHHHHHHHHCC---CEEEEEeCccH-----HHHHHH--------HHh----------------
Confidence 4678999999999999999999999999 88888876321 111111 110
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccC-CcCCCCCCHHHHHHH---HhCcCEEEEcCcccC-------hhhhHHHH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQL-EADTFGLSARDEELL---ISQTTIIFHIAATVR-------FDEHIRTA 193 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl-~~~~~gl~~~~~~~~---~~~~d~Vih~a~~~~-------~~~~~~~~ 193 (366)
...++..+.+|+ .+.+ .-+.++ +..+|++|||||... ....++..
T Consensus 367 -------------------~g~~~~~~~~Dv~~~~~-----~~~~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~ 422 (604)
T 2et6_A 367 -------------------AGGEAWPDQHDVAKDSE-----AIIKNVIDKYGTIDILVNNAGILRDRSFAKMSKQEWDSV 422 (604)
T ss_dssp -------------------TTCEEEEECCCHHHHHH-----HHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHH
T ss_pred -------------------cCCeEEEEEcChHHHHH-----HHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHH
Confidence 123455677888 4432 112222 237899999999742 13467889
Q ss_pred HHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCC
Q psy17528 194 YNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKP 270 (366)
Q Consensus 194 ~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (366)
+++|+.++..+.+.+... .+-.++|.+||....... | ..
T Consensus 423 ~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~ag~~~~----------~----------------------------~~ 464 (604)
T 2et6_A 423 QQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSGIYGN----------F----------------------------GQ 464 (604)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSCC----------T----------------------------TB
T ss_pred HHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccCC----------C----------------------------CC
Confidence 999999988887765431 244689999997543211 0 01
Q ss_pred chHHHHHHHHHHHHHHhc-----CCCCEEEEecCc
Q psy17528 271 NSYTLTKATAEDLVRQVG-----HELPICVLRPSI 300 (366)
Q Consensus 271 ~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~ 300 (366)
..|+.+|.....+.+... +|+.++.|.|+.
T Consensus 465 ~~Y~asKaal~~lt~~la~El~~~gIrVn~v~PG~ 499 (604)
T 2et6_A 465 ANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPHA 499 (604)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECC
T ss_pred hhHHHHHHHHHHHHHHHHHHhCccCeEEEEEcCCC
Confidence 579999998888877655 789999999983
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.13 E-value=2e-10 Score=128.17 Aligned_cols=168 Identities=18% Similarity=0.196 Sum_probs=117.7
Q ss_pred CCCCeEEEeCCcch-HHHHHHHHHHHhCCCccEEEEEE-cCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 46 YKDQTIFITGATGF-LGSLLVEKLLRCCPQIRKIILLI-RTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 46 ~~~~~ilItGatG~-IG~~lv~~Ll~~g~~~~~V~~~~-R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
++++++|||||+|. ||.+++++|++.| .+|++++ |+...... +. ..+...
T Consensus 474 L~GKvALVTGASgGGIGrAIAr~LA~~G---A~VVL~~~R~~e~lee---~a--------~eL~ae-------------- 525 (1688)
T 2pff_A 474 FKDKYVLITGAGKGSIGAEVLQGLLQGG---AKVVVTTSRFSKQVTD---YY--------QSIYAK-------------- 525 (1688)
T ss_dssp CCSCCEEECSCSSSSTHHHHHHHHHHHT---CEEEEEESSCSTTTTT---HH--------HHTTTT--------------
T ss_pred cCCCEEEEECCChHHHHHHHHHHHHHCc---CEEEEEeCCCHHHHHH---HH--------HHHHHH--------------
Confidence 67899999999998 9999999999999 7888874 54332211 00 011010
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------------CcCEEEEcCcccCh----
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------------QTTIIFHIAATVRF---- 186 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------------~~d~Vih~a~~~~~---- 186 (366)
......++.++.+|+++.+ ++..+++ .+|++|||||....
T Consensus 526 -----------------l~a~Ga~V~vV~~DVTD~e------sVeaLVe~I~e~~~~~GfG~~IDILVNNAGI~~~g~~l 582 (1688)
T 2pff_A 526 -----------------YGAKGSTLIVVPFNQGSKQ------DVEALIEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIEL 582 (1688)
T ss_dssp -----------------TCCTTCEEEEEECCSSSTT------HHHHHHHHHHSCTTSSSCCCCCCEEECCCCCCCCSBCS
T ss_pred -----------------hhcCCCeEEEEEeCCCCHH------HHHHHHHHHHHhccccccCCCCeEEEECCCcCCCCCCh
Confidence 1112357889999999987 6666552 48999999996421
Q ss_pred ------hhhHHHHHHHHHHHHHHHHHHHHh---c--CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcch
Q psy17528 187 ------DEHIRTAYNINVKGTQTILALAKR---M--KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASD 255 (366)
Q Consensus 187 ------~~~~~~~~~~nv~~~~~ll~~a~~---~--~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~ 255 (366)
...++..+++|+.++..+.+.+.. + .+..+||++||..+....
T Consensus 583 ~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krggGrIVnISSiAG~~Gg-------------------------- 636 (1688)
T 2pff_A 583 EHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHGTFGG-------------------------- 636 (1688)
T ss_dssp SSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCEEECCCCCSCTTTSSC--------------------------
T ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCCCCEEEEEEChHhccCC--------------------------
Confidence 345677889999999998887732 1 122589999997543210
Q ss_pred HHHHhhhhcccCCCCchHHHHHHHHHHHHHH-hc----CCCCEEEEecCccccC
Q psy17528 256 EEIALLNEHIIGGKPNSYTLTKATAEDLVRQ-VG----HELPICVLRPSIVFPT 304 (366)
Q Consensus 256 ~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~-~~----~gl~~~ilRp~~v~G~ 304 (366)
...|+.+|...+.++.. .. ..+.++.+.||.|.|+
T Consensus 637 --------------~saYaASKAAL~aLttrsLAeEla~~IRVNaVaPG~V~TT 676 (1688)
T 2pff_A 637 --------------DGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGT 676 (1688)
T ss_dssp --------------BTTHHHHHHHHTHHHHHTTTSSCTTTEECCCCCCCCCCCC
T ss_pred --------------chHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEECcCcCC
Confidence 16799999999998433 22 2378889999999853
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=7.1e-10 Score=126.65 Aligned_cols=168 Identities=16% Similarity=0.152 Sum_probs=117.4
Q ss_pred CCCCeEEEeCCcch-HHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 46 YKDQTIFITGATGF-LGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 46 ~~~~~ilItGatG~-IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
++++++|||||+|. ||.+++++|++.| .+|+++++.... ..+...+. +...
T Consensus 650 L~gKvaLVTGASgGgIG~aIAr~LA~~G---A~VVl~~~R~~~--~l~~~a~e--------L~~e--------------- 701 (1878)
T 2uv9_A 650 FQGKHALMTGAGAGSIGAEVLQGLLSGG---AKVIVTTSRFSR--QVTEYYQG--------IYAR--------------- 701 (1878)
T ss_dssp CTTCEEEEESCCTTSHHHHHHHHHHHTT---CEEEEEESSCCH--HHHHHHHH--------HHHH---------------
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHCC---CEEEEEecCChH--HHHHHHHH--------HHHH---------------
Confidence 67899999999999 9999999999998 788888654321 11111111 1000
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-----------CcCEEEEcCcccCh-------
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-----------QTTIIFHIAATVRF------- 186 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-----------~~d~Vih~a~~~~~------- 186 (366)
......++.++.+|+++.+ .+..+++ .+|+||||||....
T Consensus 702 ----------------l~~~G~~v~~v~~DVsd~e------sV~alv~~i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~ 759 (1878)
T 2uv9_A 702 ----------------CGARGSQLVVVPFNQGSKQ------DVEALVNYIYDTKNGLGWDLDYVVPFAAIPENGREIDSI 759 (1878)
T ss_dssp ----------------HCCTTCEEEEEECCTTCHH------HHHHHHHHHHCSSSSCCCCCSEEEECCCCCCTTCCTTCC
T ss_pred ----------------hhccCCeEEEEEcCCCCHH------HHHHHHHHHHHhhcccCCCCcEEEeCcccccCCCChhhc
Confidence 1112357889999999986 6666553 48999999997532
Q ss_pred ---hhhHHHHHHHHHHHHHHHHHHHH---hc--CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHH
Q psy17528 187 ---DEHIRTAYNINVKGTQTILALAK---RM--KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEI 258 (366)
Q Consensus 187 ---~~~~~~~~~~nv~~~~~ll~~a~---~~--~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~ 258 (366)
...++..+++|+.++..+.+.+. .+ .+..+||++||..+....
T Consensus 760 t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~G~IVnISS~ag~~gg----------------------------- 810 (1878)
T 2uv9_A 760 DSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQVILPLSPNHGTFGN----------------------------- 810 (1878)
T ss_dssp CHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCEEECCEECSCSSSSSC-----------------------------
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCCEEEEEcchhhccCC-----------------------------
Confidence 24567889999999988876632 22 123589999997654211
Q ss_pred HhhhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCcccc
Q psy17528 259 ALLNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFP 303 (366)
Q Consensus 259 ~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G 303 (366)
...|+.+|...+.+..... .++.++.+.||.|-|
T Consensus 811 -----------~~aYaASKAAL~aLt~~laAeEla~~IrVNaVaPG~V~g 849 (1878)
T 2uv9_A 811 -----------DGLYSESKLALETLFNRWYSESWGNYLTICGAVIGWTRG 849 (1878)
T ss_dssp -----------CSSHHHHHHHHTTHHHHHHHSTTTTTEEEEEEEECCBCC
T ss_pred -----------chHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEecceec
Confidence 1679999999998865432 348999999999873
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.2e-09 Score=125.05 Aligned_cols=168 Identities=19% Similarity=0.186 Sum_probs=118.1
Q ss_pred CCCCeEEEeCCcch-HHHHHHHHHHHhCCCccEEEEEE-cCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 46 YKDQTIFITGATGF-LGSLLVEKLLRCCPQIRKIILLI-RTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 46 ~~~~~ilItGatG~-IG~~lv~~Ll~~g~~~~~V~~~~-R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
++++++|||||+|. ||.+++++|++.| .+|++++ |+... .+.+.+. +...
T Consensus 673 l~gKvaLVTGASsGgIG~aIA~~La~~G---A~Vvl~~~R~~~~---l~~~~~e--------L~~~-------------- 724 (1887)
T 2uv8_A 673 FKDKYVLITGAGKGSIGAEVLQGLLQGG---AKVVVTTSRFSKQ---VTDYYQS--------IYAK-------------- 724 (1887)
T ss_dssp CTTCEEEEESCCSSSHHHHHHHHHHHTT---CEEEEEESSCCHH---HHHHHHH--------HHHH--------------
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHCC---CEEEEEecCCHHH---HHHHHHH--------HHHH--------------
Confidence 67899999999998 9999999999998 7888885 44321 1111111 1110
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------------CcCEEEEcCcccCh----
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------------QTTIIFHIAATVRF---- 186 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------------~~d~Vih~a~~~~~---- 186 (366)
......++.++.+|+++.+ .+..+++ .+|++|||||....
T Consensus 725 -----------------~~~~g~~v~~v~~DVsd~~------sV~alv~~i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l 781 (1887)
T 2uv8_A 725 -----------------YGAKGSTLIVVPFNQGSKQ------DVEALIEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIEL 781 (1887)
T ss_dssp -----------------HCCTTCEEEEEECCTTCHH------HHHHHHHHHHSCTTTTSCCCCCSEEEECCCCCCCSBCG
T ss_pred -----------------hhcCCCeEEEEEecCCCHH------HHHHHHHHHHHhccccccCCCCeEEEECCCcCCCCCCh
Confidence 1112357889999999986 6665552 48999999997421
Q ss_pred ------hhhHHHHHHHHHHHHHHHHHHHHhcC-----CCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcch
Q psy17528 187 ------DEHIRTAYNINVKGTQTILALAKRMK-----GLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASD 255 (366)
Q Consensus 187 ------~~~~~~~~~~nv~~~~~ll~~a~~~~-----~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~ 255 (366)
...++..+++|+.++..+.+.+.... +..+||++||..+....
T Consensus 782 ~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~G~IVnISS~ag~~gg-------------------------- 835 (1887)
T 2uv8_A 782 EHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHGTFGG-------------------------- 835 (1887)
T ss_dssp GGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCEEEEEEECSCTTCSSC--------------------------
T ss_pred hhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCEEEEEcChHhccCC--------------------------
Confidence 24467889999999999988774321 12589999997654211
Q ss_pred HHHHhhhhcccCCCCchHHHHHHHHHHH-HHHhc----CCCCEEEEecCccccC
Q psy17528 256 EEIALLNEHIIGGKPNSYTLTKATAEDL-VRQVG----HELPICVLRPSIVFPT 304 (366)
Q Consensus 256 ~~~~~~~~~~~~~~~~~Y~~sK~~~E~~-l~~~~----~gl~~~ilRp~~v~G~ 304 (366)
...|+.+|...+.+ .+... ..+.++.+.||.|.++
T Consensus 836 --------------~~aYaASKAAL~~Lttr~lA~ela~~IrVNaV~PG~V~tT 875 (1887)
T 2uv8_A 836 --------------DGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGT 875 (1887)
T ss_dssp --------------BTTHHHHHHHGGGHHHHHHHSSCTTTEEEEEEEECCEECC
T ss_pred --------------CchHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEecccccc
Confidence 16799999999988 33332 2388999999999853
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=6.3e-09 Score=103.23 Aligned_cols=172 Identities=10% Similarity=-0.037 Sum_probs=117.4
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHH-hCCCccEEEEEEcCCCCcCH---------HHHHHHHhhhhhhhhhhhcCCCCCCc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLR-CCPQIRKIILLIRTRGSTSI---------TQRVYNYFNDAVFDRMRLECPNYADK 116 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~-~g~~~~~V~~~~R~~~~~~~---------~~~i~~~~~~~~~~~~~~~~~~~~~~ 116 (366)
.+|++|||||++.||.++++.|.+ .| .+|++++|+...... .+.+.+. +..
T Consensus 46 ~gKvaLVTGas~GIG~AiA~~LA~g~G---A~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~--------~~~-------- 106 (405)
T 3zu3_A 46 GPKRVLVIGASTGYGLAARITAAFGCG---ADTLGVFFERPGEEGKPGTSGWYNSAAFHKF--------AAQ-------- 106 (405)
T ss_dssp CCSEEEEESCSSHHHHHHHHHHHHHHC---CEEEEEECCCCCBTTBCCCHHHHHHHHHHHH--------HHH--------
T ss_pred CCCEEEEeCcchHHHHHHHHHHHHhcC---CEEEEEeCCchhhhhhcccccchhHHHHHHH--------HHh--------
Confidence 478999999999999999999999 99 899999887653211 0111110 000
Q ss_pred cccccccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCccc-----
Q psy17528 117 VDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATV----- 184 (366)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~----- 184 (366)
....+..+.+|+++.+ .+..+++ .+|++|||||..
T Consensus 107 ---------------------------~G~~a~~i~~Dvtd~~------~v~~~v~~i~~~~G~IDiLVNNAG~~~r~~p 153 (405)
T 3zu3_A 107 ---------------------------KGLYAKSINGDAFSDE------IKQLTIDAIKQDLGQVDQVIYSLASPRRTHP 153 (405)
T ss_dssp ---------------------------TTCCEEEEESCTTSHH------HHHHHHHHHHHHTSCEEEEEECCCCSEEECT
T ss_pred ---------------------------cCCceEEEECCCCCHH------HHHHHHHHHHHHcCCCCEEEEcCccccccCc
Confidence 1346778999999976 5555553 589999999863
Q ss_pred -----------C-------------------------hhhhHHHHHHHHHHHHH-HHHHHHHhc---CCCcEEEEeeCcc
Q psy17528 185 -----------R-------------------------FDEHIRTAYNINVKGTQ-TILALAKRM---KGLKSFVHVSTAY 224 (366)
Q Consensus 185 -----------~-------------------------~~~~~~~~~~~nv~~~~-~ll~~a~~~---~~~~~~v~iSS~~ 224 (366)
. ....++..+++|..+.. .+++.+... ..-.++|.+||..
T Consensus 154 ~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~Vn~~~~~~~~~~~~~~~~m~~~gG~IVniSSi~ 233 (405)
T 3zu3_A 154 KTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAVMGGEDWQMWIDALLDAGVLAEGAQTTAFTYLG 233 (405)
T ss_dssp TTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHSSHHHHHHHHHHHHHTCEEEEEEEEEEECCC
T ss_pred cccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhhchhHHHHHHHHHHHHhhhhCCcEEEEEeCch
Confidence 0 12356677788877665 455544321 0124799999976
Q ss_pred eecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHHhc-----C-CCCEEEEec
Q psy17528 225 CNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVG-----H-ELPICVLRP 298 (366)
Q Consensus 225 ~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~-gl~~~ilRp 298 (366)
..... | ..+...|+.+|...+.+.+... + |++++++-|
T Consensus 234 ~~~~~----------p--------------------------~~~~~aY~AaKaal~~ltrsLA~Ela~~~GIRVNaVaP 277 (405)
T 3zu3_A 234 EKITH----------D--------------------------IYWNGSIGAAKKDLDQKVLAIRESLAAHGGGDARVSVL 277 (405)
T ss_dssp CGGGT----------T--------------------------TTTTSHHHHHHHHHHHHHHHHHHHHHTTTSCEEEEEEC
T ss_pred hhCcC----------C--------------------------CccchHHHHHHHHHHHHHHHHHHHhCcccCeEEEEEEe
Confidence 43111 0 0011679999999999887766 6 899999999
Q ss_pred CccccCCC
Q psy17528 299 SIVFPTLQ 306 (366)
Q Consensus 299 ~~v~G~~~ 306 (366)
|.|-.+..
T Consensus 278 G~i~T~~s 285 (405)
T 3zu3_A 278 KAVVSQAS 285 (405)
T ss_dssp CCCCCHHH
T ss_pred CCCcCchh
Confidence 99887643
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.8e-09 Score=112.72 Aligned_cols=164 Identities=13% Similarity=0.165 Sum_probs=107.9
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCC------cCHHHHHHHHhhhhhhhhhhhcCCCCCCcccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGS------TSITQRVYNYFNDAVFDRMRLECPNYADKVDI 119 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (366)
+++|+++||||++.||.++++.|.+.| .+|++.+|+... ....+.+.+. +...
T Consensus 6 l~gkvalVTGas~GIG~a~A~~la~~G---a~Vv~~~~~~~~~~~gr~~~~~~~~~~~--------i~~~---------- 64 (604)
T 2et6_A 6 FKDKVVIITGAGGGLGKYYSLEFAKLG---AKVVVNDLGGALNGQGGNSKAADVVVDE--------IVKN---------- 64 (604)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEECC-----------CHHHHHHHH--------HHHT----------
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHcC---CEEEEEeCCccccccccchHHHHHHHHH--------HHhc----------
Confidence 578999999999999999999999999 889988876411 1112222111 1110
Q ss_pred ccccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHH-HHH---HhCcCEEEEcCcccC-------hhh
Q psy17528 120 GITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDE-ELL---ISQTTIIFHIAATVR-------FDE 188 (366)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~-~~~---~~~~d~Vih~a~~~~-------~~~ 188 (366)
.... ..|+.+.+- ...+ .++ +..+|++|||||... ...
T Consensus 65 -------------------------g~~~---~~d~~d~~~---~~~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~ 113 (604)
T 2et6_A 65 -------------------------GGVA---VADYNNVLD---GDKIVETAVKNFGTVHVIINNAGILRDASMKKMTEK 113 (604)
T ss_dssp -------------------------TCEE---EEECCCTTC---HHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHH
T ss_pred -------------------------CCeE---EEEcCCHHH---HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHH
Confidence 1111 235555431 1122 222 236899999999742 134
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcc
Q psy17528 189 HIRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHI 265 (366)
Q Consensus 189 ~~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (366)
.++..+++|+.++..+.+++.+. .+-.+||.+||........
T Consensus 114 ~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~IVnisS~ag~~~~~----------------------------------- 158 (604)
T 2et6_A 114 DYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAGLYGNF----------------------------------- 158 (604)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCT-----------------------------------
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcCCCC-----------------------------------
Confidence 67889999999988887765431 1346899999975432110
Q ss_pred cCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecC
Q psy17528 266 IGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPS 299 (366)
Q Consensus 266 ~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~ 299 (366)
....|+.+|.....+.+... +|+.++.|.|+
T Consensus 159 ---~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~Pg 194 (604)
T 2et6_A 159 ---GQANYASAKSALLGFAETLAKEGAKYNIKANAIAPL 194 (604)
T ss_dssp ---TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC
T ss_pred ---CchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEccC
Confidence 01679999998888887665 78999999996
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=99.04 E-value=5.9e-09 Score=104.15 Aligned_cols=171 Identities=9% Similarity=-0.038 Sum_probs=115.1
Q ss_pred CCeEEEeCCcchHHHHHHHHHHH-hCCCccEEEEEEcCCCCcCH---------HHHHHHHhhhhhhhhhhhcCCCCCCcc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLR-CCPQIRKIILLIRTRGSTSI---------TQRVYNYFNDAVFDRMRLECPNYADKV 117 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~-~g~~~~~V~~~~R~~~~~~~---------~~~i~~~~~~~~~~~~~~~~~~~~~~~ 117 (366)
+|++|||||++.||.++++.|.+ .| .+|+++.|+...... .+.+.+. +..
T Consensus 61 gKvaLVTGASsGIG~AiA~~LA~~~G---A~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~--------~~~--------- 120 (422)
T 3s8m_A 61 PKKVLVIGASSGYGLASRITAAFGFG---ADTLGVFFEKPGTASKAGTAGWYNSAAFDKH--------AKA--------- 120 (422)
T ss_dssp CSEEEEESCSSHHHHHHHHHHHHHHC---CEEEEEECCCCCCSSSCCCHHHHHHHHHHHH--------HHH---------
T ss_pred CCEEEEECCChHHHHHHHHHHHHhCC---CEEEEEeCCchhhhhhhcccccchhHHHHHH--------HHh---------
Confidence 78999999999999999999999 99 899999987654321 0011010 101
Q ss_pred ccccccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH--------hCcCEEEEcCccc-----
Q psy17528 118 DIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI--------SQTTIIFHIAATV----- 184 (366)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~--------~~~d~Vih~a~~~----- 184 (366)
....+..+.+|+++.+ .+.+++ ..+|++|||||..
T Consensus 121 --------------------------~G~~a~~i~~Dvtd~~------~v~~~v~~i~~~~~G~IDiLVNNAG~~~r~~p 168 (422)
T 3s8m_A 121 --------------------------AGLYSKSINGDAFSDA------ARAQVIELIKTEMGGQVDLVVYSLASPVRKLP 168 (422)
T ss_dssp --------------------------TTCCEEEEESCTTSHH------HHHHHHHHHHHHSCSCEEEEEECCCCSEEECT
T ss_pred --------------------------cCCcEEEEEecCCCHH------HHHHHHHHHHHHcCCCCCEEEEcCcccccccc
Confidence 1346778999999976 554444 3579999999862
Q ss_pred -----------C-------------------------hhhhHHHHHHHHHHHHH-HHHHHHHhcC---CCcEEEEeeCcc
Q psy17528 185 -----------R-------------------------FDEHIRTAYNINVKGTQ-TILALAKRMK---GLKSFVHVSTAY 224 (366)
Q Consensus 185 -----------~-------------------------~~~~~~~~~~~nv~~~~-~ll~~a~~~~---~~~~~v~iSS~~ 224 (366)
. ....++..+++|..+.. .+++.+.... .-.++|.+||..
T Consensus 169 ~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v~Vn~~~~~~~~~~a~~~~~m~~~gG~IVniSSi~ 248 (422)
T 3s8m_A 169 GSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITVMGGQDWELWIDALEGAGVLADGARSVAFSYIG 248 (422)
T ss_dssp TTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHSSHHHHHHHHHHHHTTCEEEEEEEEEEEECC
T ss_pred ccccccccccccccccccccccccccccccccccCCCCHHHHHHHHHhhchhHHHHHHHHHHHHHHhhCCCEEEEEeCch
Confidence 0 12345556666665554 5555544321 124799999976
Q ss_pred eecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecC
Q psy17528 225 CNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPS 299 (366)
Q Consensus 225 ~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~ 299 (366)
...... ......|+.+|...+.+.+... +|++++++.||
T Consensus 249 g~~~~p------------------------------------~~~~~aY~ASKaAl~~lTrsLA~Ela~~GIRVNaVaPG 292 (422)
T 3s8m_A 249 TEITWP------------------------------------IYWHGALGKAKVDLDRTAQRLNARLAKHGGGANVAVLK 292 (422)
T ss_dssp CGGGHH------------------------------------HHTSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred hhccCC------------------------------------CccchHHHHHHHHHHHHHHHHHHHhCccCEEEEEEEcC
Confidence 431110 0001579999999998887765 79999999999
Q ss_pred ccccCCC
Q psy17528 300 IVFPTLQ 306 (366)
Q Consensus 300 ~v~G~~~ 306 (366)
.|-.+..
T Consensus 293 ~i~T~~~ 299 (422)
T 3s8m_A 293 SVVTQAS 299 (422)
T ss_dssp CCCCTTG
T ss_pred CCcChhh
Confidence 9987654
|
| >4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.4e-08 Score=101.47 Aligned_cols=173 Identities=9% Similarity=-0.029 Sum_probs=115.3
Q ss_pred CCCCeEEEeCCcchHHHH--HHHHHHHhCCCccEEEEEEcCCCCcCH---------HHHHHHHhhhhhhhhhhhcCCCCC
Q psy17528 46 YKDQTIFITGATGFLGSL--LVEKLLRCCPQIRKIILLIRTRGSTSI---------TQRVYNYFNDAVFDRMRLECPNYA 114 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~--lv~~Ll~~g~~~~~V~~~~R~~~~~~~---------~~~i~~~~~~~~~~~~~~~~~~~~ 114 (366)
..+|++|||||++.||.+ +++.|.+.| .+|+++.|+...... .+.+.+...
T Consensus 58 ~~gK~aLVTGassGIG~A~aia~ala~~G---a~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 119 (418)
T 4eue_A 58 RGPKKVLIVGASSGFGLATRISVAFGGPE---AHTIGVSYETGATDRRIGTAGWYNNIFFKEFAK--------------- 119 (418)
T ss_dssp CCCSEEEEESCSSHHHHHHHHHHHHSSSC---CEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHH---------------
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHHhCC---CEEEEEecCcchhhhcccccccchHHHHHHHHH---------------
Confidence 568999999999999999 999998888 899999997643210 122222111
Q ss_pred CccccccccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCccc---
Q psy17528 115 DKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATV--- 184 (366)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~--- 184 (366)
....++.++.+|+++.+ .+.++++ .+|++|||||..
T Consensus 120 ----------------------------~~g~~~~~~~~Dvtd~~------~v~~~v~~i~~~~G~IDiLVnNAG~~~r~ 165 (418)
T 4eue_A 120 ----------------------------KKGLVAKNFIEDAFSNE------TKDKVIKYIKDEFGKIDLFVYSLAAPRRK 165 (418)
T ss_dssp ----------------------------HTTCCEEEEESCTTCHH------HHHHHHHHHHHTTCCEEEEEECCCCSEEE
T ss_pred ----------------------------HcCCcEEEEEeeCCCHH------HHHHHHHHHHHHcCCCCEEEECCcccccc
Confidence 11356888999999976 5555553 579999999863
Q ss_pred -------------C-------------------------hhhhHHHHHHHHHHHHH-HHHHHHHhcC---CCcEEEEeeC
Q psy17528 185 -------------R-------------------------FDEHIRTAYNINVKGTQ-TILALAKRMK---GLKSFVHVST 222 (366)
Q Consensus 185 -------------~-------------------------~~~~~~~~~~~nv~~~~-~ll~~a~~~~---~~~~~v~iSS 222 (366)
. ....++..+++|..+.. .+++.+.... .-.++|.+||
T Consensus 166 ~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~~vn~~~~~~~~~~~l~~~~~~~~gg~IV~iSS 245 (418)
T 4eue_A 166 DYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETRKVMGGEDWQEWCEELLYEDCFSDKATTIAYSY 245 (418)
T ss_dssp CTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHHHHHSSHHHHHHHHHHHHTTCEEEEEEEEEEEC
T ss_pred cccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCcEEEEEeC
Confidence 0 12334555666655444 4455444321 1247899998
Q ss_pred cceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHHhc----C--CCCEEEE
Q psy17528 223 AYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVG----H--ELPICVL 296 (366)
Q Consensus 223 ~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~----~--gl~~~il 296 (366)
....... |. .+...|+.+|...+.+.+... . |+.++++
T Consensus 246 i~~~~~~----------p~--------------------------~~~~aY~ASKaAL~~ltrsLA~ELa~~~GIrVN~V 289 (418)
T 4eue_A 246 IGSPRTY----------KI--------------------------YREGTIGIAKKDLEDKAKLINEKLNRVIGGRAFVS 289 (418)
T ss_dssp CCCGGGT----------TT--------------------------TTTSHHHHHHHHHHHHHHHHHHHHHHHHSCEEEEE
T ss_pred chhcCCC----------Cc--------------------------cccHHHHHHHHHHHHHHHHHHHHhCCccCeEEEEE
Confidence 7543111 00 011679999999988887765 3 7999999
Q ss_pred ecCccccCCC
Q psy17528 297 RPSIVFPTLQ 306 (366)
Q Consensus 297 Rp~~v~G~~~ 306 (366)
.||.|-.+..
T Consensus 290 ~PG~v~T~~s 299 (418)
T 4eue_A 290 VNKALVTKAS 299 (418)
T ss_dssp ECCCCCCHHH
T ss_pred ECCcCcChhh
Confidence 9999987543
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.4e-08 Score=120.74 Aligned_cols=170 Identities=18% Similarity=0.191 Sum_probs=118.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
-++++++||||+|.||.++++.|.+.| .+.|++++|+.......+...+.+. .
T Consensus 1882 ~~~k~~lITGgs~GIG~aia~~la~~G--a~~vvl~~R~~~~~~~~~~~~~~l~--------~----------------- 1934 (2512)
T 2vz8_A 1882 PPHKSYVITGGLGGFGLQLAQWLRLRG--AQKLVLTSRSGIRTGYQARQVREWR--------R----------------- 1934 (2512)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTT--CCEEEEECSSCCCSHHHHHHHHHHH--------H-----------------
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCC--CCEEEEEeCCCcchHHHHHHHHHHH--------h-----------------
Confidence 468999999999999999999999998 2348888888654322222222111 1
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh------CcCEEEEcCcccCh-------hhhHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS------QTTIIFHIAATVRF-------DEHIRT 192 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~------~~d~Vih~a~~~~~-------~~~~~~ 192 (366)
...++.++.+|+++.+ ++..+++ .+|+||||||.... ...++.
T Consensus 1935 ------------------~g~~v~~~~~Dvsd~~------~v~~~~~~~~~~g~id~lVnnAgv~~~~~~~~~t~e~~~~ 1990 (2512)
T 2vz8_A 1935 ------------------QGVQVLVSTSNASSLD------GARSLITEATQLGPVGGVFNLAMVLRDAVLENQTPEFFQD 1990 (2512)
T ss_dssp ------------------TTCEEEEECCCSSSHH------HHHHHHHHHHHHSCEEEEEECCCC----------------
T ss_pred ------------------CCCEEEEEecCCCCHH------HHHHHHHHHHhcCCCcEEEECCCcCCCCchhhCCHHHHHH
Confidence 1246788899999976 5555543 58999999997431 234566
Q ss_pred HHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCc
Q psy17528 193 AYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPN 271 (366)
Q Consensus 193 ~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (366)
.+++|+.|+.++.+++... ....+||.+||..+..... ...
T Consensus 1991 ~~~~nv~g~~~l~~~~~~~~~~~g~iV~iSS~ag~~g~~--------------------------------------g~~ 2032 (2512)
T 2vz8_A 1991 VSKPKYSGTANLDRVTREACPELDYFVIFSSVSCGRGNA--------------------------------------GQA 2032 (2512)
T ss_dssp CTTTTHHHHHHHHHHHHHHCTTCCEEEEECCHHHHTTCT--------------------------------------TCH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCEEEEecchhhcCCCC--------------------------------------CcH
Confidence 7888999999998876542 3447999999986542210 116
Q ss_pred hHHHHHHHHHHHHHHhc-CCCCEEEEecCccccC
Q psy17528 272 SYTLTKATAEDLVRQVG-HELPICVLRPSIVFPT 304 (366)
Q Consensus 272 ~Y~~sK~~~E~~l~~~~-~gl~~~ilRp~~v~G~ 304 (366)
.|+.+|...+.+.+... .|++...+..+.+-+.
T Consensus 2033 ~Y~aaKaal~~l~~~rr~~Gl~~~a~~~g~~~~~ 2066 (2512)
T 2vz8_A 2033 NYGFANSAMERICEKRRHDGLPGLAVQWGAIGDV 2066 (2512)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCCEEEECCBCTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCcEEEEEccCcCCc
Confidence 79999999999998766 7899988888766443
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=8.3e-07 Score=106.30 Aligned_cols=171 Identities=12% Similarity=0.119 Sum_probs=110.1
Q ss_pred cCCCCeEEEeCCcch-HHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 45 FYKDQTIFITGATGF-LGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 45 ~~~~~~ilItGatG~-IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
.+++|+++||||++. ||.++++.|++.| .+|++.+|+.... ..+.+.+... .
T Consensus 2133 ~l~gKvaLVTGAs~GsIG~AiA~~La~~G---A~Vvi~~r~~~~~-~~~~~~~l~~-----~------------------ 2185 (3089)
T 3zen_D 2133 XXXDEVAVVTGASKGSIAASVVGQLLDGG---ATVIATTSRLDDD-RLAFYKQLYR-----D------------------ 2185 (3089)
T ss_dssp CCCCCEEEEESCCTTSHHHHHHHHHHHTT---CEEEEEESCCSHH-HHHHHHHHHH-----H------------------
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHHCC---CEEEEEeCChhhh-hhHHHHHHHH-----H------------------
Confidence 478999999999999 9999999999999 8999999975421 0011111110 1
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-----------CcCEEEEcCcc----cC---
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-----------QTTIIFHIAAT----VR--- 185 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-----------~~d~Vih~a~~----~~--- 185 (366)
......++..+.+|+++.+ ++..+++ .+|++|||||. ..
T Consensus 2186 -----------------l~~~G~~~~~v~~Dvtd~~------~v~~lv~~i~~~~~~~fG~IDILVNNAGi~d~~~~~a~ 2242 (3089)
T 3zen_D 2186 -----------------HARFDATLWVVPANMASYS------DIDKLVEWVGTEQTESLGPQSIHLKDAQTPTLLFPFAA 2242 (3089)
T ss_dssp -----------------HCCTTCEEEEEECCTTCHH------HHHHHHHHHTSCCEEEESSSEEEECCCCCCSEEEECCC
T ss_pred -----------------HhhcCCeEEEEEecCCCHH------HHHHHHHHHHhhhhhhcCCCCEEEECCCcccccCcccc
Confidence 1112356788999999976 6665532 47999999997 11
Q ss_pred ---------hhhhHHHHHHHHHHHHHHHHHHHHhc---CCC---cEEEEeeC-cceecCccccccccCCCCCChHHHHHH
Q psy17528 186 ---------FDEHIRTAYNINVKGTQTILALAKRM---KGL---KSFVHVST-AYCNCDRKFIAEKFYPPVFTAEELSAL 249 (366)
Q Consensus 186 ---------~~~~~~~~~~~nv~~~~~ll~~a~~~---~~~---~~~v~iSS-~~~~~~~~~~~e~~~~~p~~~~~~~~~ 249 (366)
++...+..+++|+.++..+++.+... .+. ..++..+| .... .
T Consensus 2243 ~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~~~~g~~~~ii~~~ss~~g~--~-------------------- 2300 (3089)
T 3zen_D 2243 PRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDIASRLHVVLPGSPNRGM--F-------------------- 2300 (3089)
T ss_dssp CCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCCEEEEEEECSSTTS--C--------------------
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEECCccccc--C--------------------
Confidence 11233455888888888777765431 111 12222222 1110 0
Q ss_pred hhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHHhc------CCCCEEEEecCccccCC
Q psy17528 250 VAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVG------HELPICVLRPSIVFPTL 305 (366)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~------~gl~~~ilRp~~v~G~~ 305 (366)
.....|+.+|...+.+.+.+. .++.++.+.||.|-++.
T Consensus 2301 ------------------g~~~aYsASKaAl~~LtrslA~E~~~a~~IrVn~v~PG~v~tT~ 2344 (3089)
T 3zen_D 2301 ------------------GGDGAYGEAKSALDALENRWSAEKSWAERVSLAHALIGWTKGTG 2344 (3089)
T ss_dssp ------------------SSCSSHHHHGGGHHHHHHHHHHCSTTTTTEEEEEEECCCEECST
T ss_pred ------------------CCchHHHHHHHHHHHHHHHHHhccccCCCeEEEEEeecccCCCc
Confidence 001479999998888776554 35788999999987543
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=98.52 E-value=5.1e-08 Score=94.33 Aligned_cols=124 Identities=11% Similarity=0.039 Sum_probs=80.4
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCC----CccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCP----QIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~----~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
.++|+||||+||+|++++..|+..|. ....|.++++..+. ..++...... .+.
T Consensus 5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~--~~~~~~g~~~-----dl~---------------- 61 (329)
T 1b8p_A 5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEK--AQKALQGVMM-----EID---------------- 61 (329)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHH--HHHHHHHHHH-----HHH----------------
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCcc--ccccchhhHH-----HHh----------------
Confidence 46899999999999999999998752 12378888775100 0011110000 000
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh-hhhHHHHHHHHHHHHH
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF-DEHIRTAYNINVKGTQ 202 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~-~~~~~~~~~~nv~~~~ 202 (366)
.... . . ..++.... +..+.++++|+|||+||.... .....++...|+.+++
T Consensus 62 -----------------~~~~-~-~---~~~i~~~~------~~~~al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~ 113 (329)
T 1b8p_A 62 -----------------DCAF-P-L---LAGMTAHA------DPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFT 113 (329)
T ss_dssp -----------------TTTC-T-T---EEEEEEES------SHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHH
T ss_pred -----------------hhcc-c-c---cCcEEEec------CcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHH
Confidence 0000 0 0 12343333 567788999999999997643 3345678899999999
Q ss_pred HHHHHHHhcC-CCcEEEEeeC
Q psy17528 203 TILALAKRMK-GLKSFVHVST 222 (366)
Q Consensus 203 ~ll~~a~~~~-~~~~~v~iSS 222 (366)
++++.+.+.. .-.+|+++|.
T Consensus 114 ~i~~~i~~~~~p~a~ii~~SN 134 (329)
T 1b8p_A 114 VQGKAIDAVASRNIKVLVVGN 134 (329)
T ss_dssp HHHHHHHHHSCTTCEEEECSS
T ss_pred HHHHHHHHhcCCCeEEEEccC
Confidence 9999998873 3348888886
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.7e-06 Score=69.31 Aligned_cols=97 Identities=14% Similarity=0.110 Sum_probs=69.5
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+++|+|+|+ |++|+.+++.|++.| .++|++++|++.. +... .
T Consensus 5 ~~~v~I~G~-G~iG~~~~~~l~~~g--~~~v~~~~r~~~~------~~~~---------~-------------------- 46 (118)
T 3ic5_A 5 RWNICVVGA-GKIGQMIAALLKTSS--NYSVTVADHDLAA------LAVL---------N-------------------- 46 (118)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCS--SEEEEEEESCHHH------HHHH---------H--------------------
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCC--CceEEEEeCCHHH------HHHH---------H--------------------
Confidence 578999999 999999999999986 3679999996421 1110 0
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILAL 207 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll~~ 207 (366)
...+.++.+|+.+.+ .+.++++++|+|||+++... ...+++.
T Consensus 47 -----------------~~~~~~~~~d~~~~~------~~~~~~~~~d~vi~~~~~~~---------------~~~~~~~ 88 (118)
T 3ic5_A 47 -----------------RMGVATKQVDAKDEA------GLAKALGGFDAVISAAPFFL---------------TPIIAKA 88 (118)
T ss_dssp -----------------TTTCEEEECCTTCHH------HHHHHTTTCSEEEECSCGGG---------------HHHHHHH
T ss_pred -----------------hCCCcEEEecCCCHH------HHHHHHcCCCEEEECCCchh---------------hHHHHHH
Confidence 135677889998866 78888899999999986321 2456667
Q ss_pred HHhcCCCcEEEEeeC
Q psy17528 208 AKRMKGLKSFVHVST 222 (366)
Q Consensus 208 a~~~~~~~~~v~iSS 222 (366)
+.+. +++++. +|+
T Consensus 89 ~~~~-g~~~~~-~~~ 101 (118)
T 3ic5_A 89 AKAA-GAHYFD-LTE 101 (118)
T ss_dssp HHHT-TCEEEC-CCS
T ss_pred HHHh-CCCEEE-ecC
Confidence 7665 555443 443
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=98.42 E-value=7.1e-07 Score=86.22 Aligned_cols=117 Identities=14% Similarity=0.064 Sum_probs=79.9
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
.++|+||||+||+|+.++..|+..| .+..|.++++.+. .....+ +.
T Consensus 8 ~mKI~ViGAaG~VG~~la~~L~~~g-~~~ev~l~Di~~~----~~~~~d---------L~-------------------- 53 (326)
T 1smk_A 8 GFKVAILGAAGGIGQPLAMLMKMNP-LVSVLHLYDVVNA----PGVTAD---------IS-------------------- 53 (326)
T ss_dssp CEEEEEETTTSTTHHHHHHHHHHCT-TEEEEEEEESSSH----HHHHHH---------HH--------------------
T ss_pred CCEEEEECCCChHHHHHHHHHHhCC-CCCEEEEEeCCCc----HhHHHH---------hh--------------------
Confidence 4689999999999999999998875 3578888887643 111111 00
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh-hhHHHHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD-EHIRTAYNINVKGTQTILA 206 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~-~~~~~~~~~nv~~~~~ll~ 206 (366)
.......+..+ ...+ ++.++++++|+|||+||..... ....++...|+.+++++++
T Consensus 54 -------------~~~~~~~v~~~----~~t~------d~~~al~gaDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~ 110 (326)
T 1smk_A 54 -------------HMDTGAVVRGF----LGQQ------QLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCE 110 (326)
T ss_dssp -------------TSCSSCEEEEE----ESHH------HHHHHHTTCSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHH
T ss_pred -------------cccccceEEEE----eCCC------CHHHHcCCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 00001122221 1122 5678889999999999975432 2334678899999999999
Q ss_pred HHHhcCCCcEEEEeeC
Q psy17528 207 LAKRMKGLKSFVHVST 222 (366)
Q Consensus 207 ~a~~~~~~~~~v~iSS 222 (366)
.+.+. +++.+++++|
T Consensus 111 ~i~~~-~p~~~viv~S 125 (326)
T 1smk_A 111 GIAKC-CPRAIVNLIS 125 (326)
T ss_dssp HHHHH-CTTSEEEECC
T ss_pred HHHhh-CCCeEEEEEC
Confidence 99987 5677777776
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.7e-06 Score=83.06 Aligned_cols=121 Identities=14% Similarity=0.127 Sum_probs=77.5
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
++|+||||+||+|++++..|+..| ....+.++++.... ...+....-+.+ .
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~-~~~el~L~Di~~~~-~~~~~~~~dl~~----~----------------------- 51 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEP-FMKDLVLIGREHSI-NKLEGLREDIYD----A----------------------- 51 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCT-TCCEEEEEECGGGH-HHHHHHHHHHHH----H-----------------------
T ss_pred CEEEEECCCChhHHHHHHHHHhCC-CCCEEEEEcCCCch-hhhHHHHHHHHH----h-----------------------
Confidence 489999999999999999999886 34568788872111 000100000000 0
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh-hhhHHHHHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF-DEHIRTAYNINVKGTQTILAL 207 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~-~~~~~~~~~~nv~~~~~ll~~ 207 (366)
.+.....+.+...+ + .+.+.++++|+|||+||.... ......++..|+.+++++++.
T Consensus 52 ------------~~~~~~~~~i~~~~--d--------~l~~al~gaD~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~ 109 (313)
T 1hye_A 52 ------------LAGTRSDANIYVES--D--------ENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKK 109 (313)
T ss_dssp ------------HTTSCCCCEEEEEE--T--------TCGGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ------------HHhcCCCeEEEeCC--c--------chHHHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 00011233333321 1 123557899999999997643 234567889999999999999
Q ss_pred HHhcCCCcEEEEeeC
Q psy17528 208 AKRMKGLKSFVHVST 222 (366)
Q Consensus 208 a~~~~~~~~~v~iSS 222 (366)
+.+. + +.+++++|
T Consensus 110 i~~~-~-~~~vlv~S 122 (313)
T 1hye_A 110 IAEI-C-DTKIFVIT 122 (313)
T ss_dssp HHHH-C-CCEEEECS
T ss_pred HHHh-C-CeEEEEec
Confidence 9998 5 77877777
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=98.24 E-value=9.2e-06 Score=77.55 Aligned_cols=118 Identities=8% Similarity=0.005 Sum_probs=77.2
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
++|+||||+|++|+.++..|+..| ....+.++++... .+++..... .+.+.
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~-~~~el~L~Di~~~----~~~~~~~~~-----dl~~~------------------- 51 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRD-IADEVVFVDIPDK----EDDTVGQAA-----DTNHG------------------- 51 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CCSEEEEECCGGG----HHHHHHHHH-----HHHHH-------------------
T ss_pred CEEEEECCCChHHHHHHHHHHhCC-CCCEEEEEcCCCC----hhhHHHHHH-----HHHHH-------------------
Confidence 589999999999999999998886 3456888877211 111111000 01100
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh-hhHHHHHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD-EHIRTAYNINVKGTQTILAL 207 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~-~~~~~~~~~nv~~~~~ll~~ 207 (366)
.. ....+.+...| . +.++++|+|||+|+..... ....++...|+.+++++++.
T Consensus 52 ------------~~-~~~~~~v~~~~---~----------~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~ 105 (303)
T 1o6z_A 52 ------------IA-YDSNTRVRQGG---Y----------EDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSS 105 (303)
T ss_dssp ------------HT-TTCCCEEEECC---G----------GGGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ------------Hh-hCCCcEEEeCC---H----------HHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 00 11233444322 1 3368999999999976432 34456789999999999999
Q ss_pred HHhcCCCcEEEEeeC
Q psy17528 208 AKRMKGLKSFVHVST 222 (366)
Q Consensus 208 a~~~~~~~~~v~iSS 222 (366)
+.+. +.+.+++++|
T Consensus 106 i~~~-~p~~~viv~S 119 (303)
T 1o6z_A 106 LDEH-NDDYISLTTS 119 (303)
T ss_dssp HHTT-CSCCEEEECC
T ss_pred HHHH-CCCcEEEEeC
Confidence 9987 6677888776
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=1.6e-06 Score=81.88 Aligned_cols=82 Identities=17% Similarity=0.195 Sum_probs=61.0
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++++++||||+|++|+++++.|++.| .+|++++|+... .+.+.+.+.. .
T Consensus 117 l~gk~vlVtGaaGGiG~aia~~L~~~G---~~V~i~~R~~~~---~~~l~~~~~~--------~---------------- 166 (287)
T 1lu9_A 117 VKGKKAVVLAGTGPVGMRSAALLAGEG---AEVVLCGRKLDK---AQAAADSVNK--------R---------------- 166 (287)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTT---CEEEEEESSHHH---HHHHHHHHHH--------H----------------
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCc---CEEEEEECCHHH---HHHHHHHHHh--------c----------------
Confidence 568999999999999999999999998 679999997421 1222221110 0
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcc
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAAT 183 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~ 183 (366)
.++.++.+|+.+.+ ++.++++++|+|||+++.
T Consensus 167 --------------------~~~~~~~~D~~~~~------~~~~~~~~~DvlVn~ag~ 198 (287)
T 1lu9_A 167 --------------------FKVNVTAAETADDA------SRAEAVKGAHFVFTAGAI 198 (287)
T ss_dssp --------------------HTCCCEEEECCSHH------HHHHHTTTCSEEEECCCT
T ss_pred --------------------CCcEEEEecCCCHH------HHHHHHHhCCEEEECCCc
Confidence 12345678998866 788888899999999985
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=98.10 E-value=9.5e-06 Score=81.73 Aligned_cols=108 Identities=13% Similarity=0.198 Sum_probs=72.3
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
|++++|+|+| +|++|+++++.|++.| .+|++++|+... ..+ +
T Consensus 1 M~~k~VlViG-aG~iG~~ia~~L~~~G---~~V~v~~R~~~~------a~~---------l------------------- 42 (450)
T 1ff9_A 1 MATKSVLMLG-SGFVTRPTLDVLTDSG---IKVTVACRTLES------AKK---------L------------------- 42 (450)
T ss_dssp -CCCEEEEEC-CSTTHHHHHHHHHTTT---CEEEEEESSHHH------HHH---------T-------------------
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHhCc---CEEEEEECCHHH------HHH---------H-------------------
Confidence 4578999998 7999999999999987 679999997321 111 0
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHH--H------
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNI--N------ 197 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~--n------ 197 (366)
.. ....+..+.+|+.+.+ .+.+++.++|+|||+++......-...+++. |
T Consensus 43 ---------------a~-~~~~~~~~~~Dv~d~~------~l~~~l~~~DvVIn~a~~~~~~~i~~a~l~~g~~vvd~~~ 100 (450)
T 1ff9_A 43 ---------------SA-GVQHSTPISLDVNDDA------ALDAEVAKHDLVISLIPYTFHATVIKSAIRQKKHVVTTSY 100 (450)
T ss_dssp ---------------TT-TCTTEEEEECCTTCHH------HHHHHHTTSSEEEECCC--CHHHHHHHHHHHTCEEEESSC
T ss_pred ---------------HH-hcCCceEEEeecCCHH------HHHHHHcCCcEEEECCccccchHHHHHHHhCCCeEEEeec
Confidence 00 0124677889998865 6778888999999999864332212222222 2
Q ss_pred -HHHHHHHHHHHHhcCCC
Q psy17528 198 -VKGTQTILALAKRMKGL 214 (366)
Q Consensus 198 -v~~~~~ll~~a~~~~~~ 214 (366)
...+..+++++++. ++
T Consensus 101 ~~~~~~~l~~aA~~a-Gv 117 (450)
T 1ff9_A 101 VSPAMMELDQAAKDA-GI 117 (450)
T ss_dssp CCHHHHHTHHHHHHT-TC
T ss_pred ccHHHHHHHHHHHHC-CC
Confidence 23567888888876 54
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=1.8e-05 Score=65.31 Aligned_cols=36 Identities=19% Similarity=0.359 Sum_probs=30.0
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+++++|+|+|+ |.+|+.+++.|.+.| .+|++++|+.
T Consensus 4 ~~~~~v~I~G~-G~iG~~~a~~l~~~g---~~v~~~d~~~ 39 (144)
T 2hmt_A 4 IKNKQFAVIGL-GRFGGSIVKELHRMG---HEVLAVDINE 39 (144)
T ss_dssp --CCSEEEECC-SHHHHHHHHHHHHTT---CCCEEEESCH
T ss_pred CcCCcEEEECC-CHHHHHHHHHHHHCC---CEEEEEeCCH
Confidence 35678999998 999999999999998 6788888863
|
| >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.92 E-value=4.3e-05 Score=70.40 Aligned_cols=36 Identities=31% Similarity=0.552 Sum_probs=33.0
Q ss_pred CCCeEEEeCC----------------cchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 47 KDQTIFITGA----------------TGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 47 ~~~~ilItGa----------------tG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
++++|||||| +|.+|.++++.+++.| ..|+++.|+.
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~G---a~V~lv~~~~ 53 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAG---YEVCLITTKR 53 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTT---CEEEEEECTT
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCC---CEEEEEeCCc
Confidence 4799999999 9999999999999999 8999999975
|
| >4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00044 Score=68.26 Aligned_cols=93 Identities=14% Similarity=0.037 Sum_probs=61.4
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHH-HhCCCccEEEEEEcCCCCcCH---HHHHHHHhhhhhhhhhhhcCCCCCCcccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLL-RCCPQIRKIILLIRTRGSTSI---TQRVYNYFNDAVFDRMRLECPNYADKVDIGI 121 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll-~~g~~~~~V~~~~R~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (366)
..+|++|||||+..+|.+.+..|. +.| ..|+++.+....... ....++ ...+-...+.
T Consensus 48 ~~pK~vLVtGaSsGiGlA~AialAf~~G---A~vi~v~~~~~~~~~~~atag~~~--~~a~~~~i~~------------- 109 (401)
T 4ggo_A 48 KAPKNVLVLGCSNGYGLASRITAAFGYG---AATIGVSFEKAGSETKYGTPGWYN--NLAFDEAAKR------------- 109 (401)
T ss_dssp CCCCEEEEESCSSHHHHHHHHHHHHHHC---CEEEEEECCCCCCSSSCCCHHHHH--HHHHHHHHHH-------------
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHhhCC---CCEEEEecCCcccccccccccchh--HHHHHHHHHH-------------
Confidence 347999999999999999999887 677 778888886543210 000000 0000111111
Q ss_pred ccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCccc
Q psy17528 122 THRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATV 184 (366)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~ 184 (366)
.......+.+|+.+++ ...++++ ++|++||++|..
T Consensus 110 ----------------------~G~~a~~i~~Dv~d~e------~i~~vi~~i~~~~G~IDiLVhS~A~~ 151 (401)
T 4ggo_A 110 ----------------------EGLYSVTIDGDAFSDE------IKAQVIEEAKKKGIKFDLIVYSLASP 151 (401)
T ss_dssp ----------------------HTCCEEEEESCTTSHH------HHHHHHHHHHHTTCCEEEEEECCCCS
T ss_pred ----------------------cCCCceeEeCCCCCHH------HHHHHHHHHHHhcCCCCEEEEecccc
Confidence 2357789999999986 5666553 689999999964
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00042 Score=66.38 Aligned_cols=117 Identities=15% Similarity=0.067 Sum_probs=76.7
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
++|.|+||+|++|+.++..|+..| -+..|.++++++ . +.... .+.
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~-~~~ev~L~Di~~-~----~~~a~--------dL~--------------------- 45 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSP-LVSRLTLYDIAH-T----PGVAA--------DLS--------------------- 45 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCT-TCSEEEEEESSS-H----HHHHH--------HHT---------------------
T ss_pred CEEEEECCCChHHHHHHHHHHhCC-CCcEEEEEeCCc-c----HHHHH--------HHh---------------------
Confidence 489999999999999999998875 357899999975 1 11110 010
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh-hhHHHHHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD-EHIRTAYNINVKGTQTILAL 207 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~-~~~~~~~~~nv~~~~~ll~~ 207 (366)
......++..+.+ .+ ++.++++++|+||+++|..... +...+....|+..++.+++.
T Consensus 46 ------------~~~~~~~l~~~~~----t~------d~~~a~~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~ 103 (314)
T 1mld_A 46 ------------HIETRATVKGYLG----PE------QLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAA 103 (314)
T ss_dssp ------------TSSSSCEEEEEES----GG------GHHHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHH
T ss_pred ------------ccCcCceEEEecC----CC------CHHHHhCCCCEEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 0000112222211 11 4677889999999999976432 33345678899999999998
Q ss_pred HHhcCCCcEEEEeeC
Q psy17528 208 AKRMKGLKSFVHVST 222 (366)
Q Consensus 208 a~~~~~~~~~v~iSS 222 (366)
+.+...-..++++|-
T Consensus 104 i~~~~p~a~viv~sN 118 (314)
T 1mld_A 104 CAQHCPDAMICIISN 118 (314)
T ss_dssp HHHHCTTSEEEECSS
T ss_pred HHhhCCCeEEEEECC
Confidence 887633346666544
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00064 Score=55.58 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=29.6
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+++|+|+|+ |++|+.+++.|.+.| +.|++++|++
T Consensus 4 ~m~i~IiG~-G~iG~~~a~~L~~~g---~~v~~~d~~~ 37 (140)
T 1lss_A 4 GMYIIIAGI-GRVGYTLAKSLSEKG---HDIVLIDIDK 37 (140)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTT---CEEEEEESCH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCC---CeEEEEECCH
Confidence 478999986 999999999999998 7899998863
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00013 Score=60.71 Aligned_cols=35 Identities=17% Similarity=0.281 Sum_probs=30.7
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
++++|+|+|+ |.+|+.+++.|.+.| +.|+++++++
T Consensus 5 ~~~~v~I~G~-G~iG~~la~~L~~~g---~~V~~id~~~ 39 (141)
T 3llv_A 5 GRYEYIVIGS-EAAGVGLVRELTAAG---KKVLAVDKSK 39 (141)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTT---CCEEEEESCH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCC---CeEEEEECCH
Confidence 4678999997 999999999999998 7899999864
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=2.7e-05 Score=75.46 Aligned_cols=56 Identities=14% Similarity=0.096 Sum_probs=41.7
Q ss_pred HHHHHhCcCEEEEcCcccCh-hhhHHHHHHHHHHHHHHHHHHHHhcCCCc-EEEEeeC
Q psy17528 167 EELLISQTTIIFHIAATVRF-DEHIRTAYNINVKGTQTILALAKRMKGLK-SFVHVST 222 (366)
Q Consensus 167 ~~~~~~~~d~Vih~a~~~~~-~~~~~~~~~~nv~~~~~ll~~a~~~~~~~-~~v~iSS 222 (366)
..+.++++|+||++||.... .+...++++.|+..++.+++.+.+...-. +++.+|.
T Consensus 73 ~~~~~~daDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsN 130 (333)
T 5mdh_A 73 EEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGN 130 (333)
T ss_dssp HHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred cHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 45667899999999997643 23456688999999999999998873222 4666665
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00041 Score=58.82 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=32.4
Q ss_pred cccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 43 QEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 43 ~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
++...+++|+|+|+ |.+|+.+++.|.+.| .+|++++|++.
T Consensus 14 ~~~~~~~~v~IiG~-G~iG~~la~~L~~~g---~~V~vid~~~~ 53 (155)
T 2g1u_A 14 SKKQKSKYIVIFGC-GRLGSLIANLASSSG---HSVVVVDKNEY 53 (155)
T ss_dssp ---CCCCEEEEECC-SHHHHHHHHHHHHTT---CEEEEEESCGG
T ss_pred hcccCCCcEEEECC-CHHHHHHHHHHHhCC---CeEEEEECCHH
Confidence 34455789999995 999999999999998 78999999753
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00024 Score=69.03 Aligned_cols=123 Identities=11% Similarity=0.055 Sum_probs=77.2
Q ss_pred cccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccc
Q psy17528 43 QEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGIT 122 (366)
Q Consensus 43 ~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (366)
-+||+++||.|+|++|++|+.++..++..| ....|.++++..... +....-+.
T Consensus 3 ~~~~~~~KV~ViGaaG~VG~~~a~~l~~~g-~~~evvLiDi~~~k~---~g~a~DL~----------------------- 55 (343)
T 3fi9_A 3 LSYLTEEKLTIVGAAGMIGSNMAQTAAMMR-LTPNLCLYDPFAVGL---EGVAEEIR----------------------- 55 (343)
T ss_dssp CCCSCSSEEEEETTTSHHHHHHHHHHHHTT-CCSCEEEECSCHHHH---HHHHHHHH-----------------------
T ss_pred ccccCCCEEEEECCCChHHHHHHHHHHhcC-CCCEEEEEeCCchhH---HHHHHhhh-----------------------
Confidence 368889999999999999999999999987 345788998853211 11000000
Q ss_pred cccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh-hhHHHHHHHHHHHH
Q psy17528 123 HRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD-EHIRTAYNINVKGT 201 (366)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~-~~~~~~~~~nv~~~ 201 (366)
|.. .+ ..++.+ .. ++.+.++++|+||.+||....+ +...++...|+...
T Consensus 56 ~~~---------------~~--~~~i~~-------t~------d~~~al~dADvVvitaG~p~kpG~~R~dLl~~N~~I~ 105 (343)
T 3fi9_A 56 HCG---------------FE--GLNLTF-------TS------DIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIA 105 (343)
T ss_dssp HHC---------------CT--TCCCEE-------ES------CHHHHHTTEEEEEECCC-------CHHHHHHHHHHHH
T ss_pred hCc---------------CC--CCceEE-------cC------CHHHHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHH
Confidence 000 00 012221 11 3557789999999999975432 34567889999999
Q ss_pred HHHHHHHHhcCCCc-EEEEeeC
Q psy17528 202 QTILALAKRMKGLK-SFVHVST 222 (366)
Q Consensus 202 ~~ll~~a~~~~~~~-~~v~iSS 222 (366)
+.+.+.+.+...-. .++.+|.
T Consensus 106 ~~i~~~i~~~~p~a~~vlvvsN 127 (343)
T 3fi9_A 106 AQLGKDIKSYCPDCKHVIIIFN 127 (343)
T ss_dssp HHHHHHHHHHCTTCCEEEECSS
T ss_pred HHHHHHHHHhccCcEEEEEecC
Confidence 99999888763222 2455544
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00011 Score=72.82 Aligned_cols=83 Identities=20% Similarity=0.254 Sum_probs=60.2
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCc-cEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQI-RKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~-~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
|++|+|+|| |++|+.+++.|.+.| .+ ..|.+.+|+... .+++.+.+. .
T Consensus 1 M~kVlIiGa-GgiG~~ia~~L~~~g-~~~~~V~v~~r~~~~---~~~la~~l~--------~------------------ 49 (405)
T 4ina_A 1 MAKVLQIGA-GGVGGVVAHKMAMNR-EVFSHITLASRTLSK---CQEIAQSIK--------A------------------ 49 (405)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHTCT-TTCCEEEEEESCHHH---HHHHHHHHH--------H------------------
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCC-CCceEEEEEECCHHH---HHHHHHHhh--------h------------------
Confidence 468999998 999999999999986 33 589999997432 222222111 0
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhC--cCEEEEcCcc
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQ--TTIIFHIAAT 183 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~--~d~Vih~a~~ 183 (366)
. ...++..+.+|+.+.+ ++.+++++ +|+|||+++.
T Consensus 50 --------------~--~~~~~~~~~~D~~d~~------~l~~~l~~~~~DvVin~ag~ 86 (405)
T 4ina_A 50 --------------K--GYGEIDITTVDADSIE------ELVALINEVKPQIVLNIALP 86 (405)
T ss_dssp --------------T--TCCCCEEEECCTTCHH------HHHHHHHHHCCSEEEECSCG
T ss_pred --------------h--cCCceEEEEecCCCHH------HHHHHHHhhCCCEEEECCCc
Confidence 0 0135788899999876 78888876 8999999985
|
| >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00024 Score=65.11 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=33.6
Q ss_pred CCCCeEEEeCC----------------cchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGA----------------TGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGa----------------tG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+++++|||||| +|.+|.++++.|.+.| .+|+++.|+.
T Consensus 6 l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~G---a~V~l~~~~~ 58 (226)
T 1u7z_A 6 LKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRG---ANVTLVSGPV 58 (226)
T ss_dssp TTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTT---CEEEEEECSC
T ss_pred CCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCC---CEEEEEECCc
Confidence 67899999999 6999999999999999 8898888764
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00049 Score=69.55 Aligned_cols=82 Identities=10% Similarity=0.222 Sum_probs=57.2
Q ss_pred cccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccc
Q psy17528 43 QEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGIT 122 (366)
Q Consensus 43 ~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (366)
...+++++|+|+|| |++|+.+++.|++.+ . .+|++++|+.+. .+.+.+
T Consensus 18 ~~~l~~k~VlIiGA-GgiG~aia~~L~~~~-g-~~V~v~~R~~~k---a~~la~-------------------------- 65 (467)
T 2axq_A 18 EGRHMGKNVLLLGS-GFVAQPVIDTLAAND-D-INVTVACRTLAN---AQALAK-------------------------- 65 (467)
T ss_dssp -----CEEEEEECC-STTHHHHHHHHHTST-T-EEEEEEESSHHH---HHHHHG--------------------------
T ss_pred ccCCCCCEEEEECC-hHHHHHHHHHHHhCC-C-CeEEEEECCHHH---HHHHHH--------------------------
Confidence 33455789999997 999999999999983 2 579999997421 111111
Q ss_pred cccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCccc
Q psy17528 123 HRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATV 184 (366)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~ 184 (366)
. ..+..+.+|+.+.+ .+..++.++|+|||+++..
T Consensus 66 ------------------~----~~~~~~~~D~~d~~------~l~~~l~~~DvVIn~tp~~ 99 (467)
T 2axq_A 66 ------------------P----SGSKAISLDVTDDS------ALDKVLADNDVVISLIPYT 99 (467)
T ss_dssp ------------------G----GTCEEEECCTTCHH------HHHHHHHTSSEEEECSCGG
T ss_pred ------------------h----cCCcEEEEecCCHH------HHHHHHcCCCEEEECCchh
Confidence 0 13456778888765 6778888999999999864
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0001 Score=71.77 Aligned_cols=71 Identities=8% Similarity=0.018 Sum_probs=54.5
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
|+|+|.|| |++|+.+++.|.+. ..|.+.+|+.. ++.+.
T Consensus 17 mkilvlGa-G~vG~~~~~~L~~~----~~v~~~~~~~~------~~~~~------------------------------- 54 (365)
T 3abi_A 17 MKVLILGA-GNIGRAIAWDLKDE----FDVYIGDVNNE------NLEKV------------------------------- 54 (365)
T ss_dssp CEEEEECC-SHHHHHHHHHHTTT----SEEEEEESCHH------HHHHH-------------------------------
T ss_pred cEEEEECC-CHHHHHHHHHHhcC----CCeEEEEcCHH------HHHHH-------------------------------
Confidence 57999998 99999999998765 67888888632 11110
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcc
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAAT 183 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~ 183 (366)
.+.+..+..|+.|.+ .+..+++++|+||++++.
T Consensus 55 ----------------~~~~~~~~~d~~d~~------~l~~~~~~~DvVi~~~p~ 87 (365)
T 3abi_A 55 ----------------KEFATPLKVDASNFD------KLVEVMKEFELVIGALPG 87 (365)
T ss_dssp ----------------TTTSEEEECCTTCHH------HHHHHHTTCSEEEECCCG
T ss_pred ----------------hccCCcEEEecCCHH------HHHHHHhCCCEEEEecCC
Confidence 134456788998876 889999999999999875
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0004 Score=58.72 Aligned_cols=79 Identities=10% Similarity=0.176 Sum_probs=57.2
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
|..++|+|+|+ |.+|+.+++.|.+.| +.|++++++... ..+++...
T Consensus 1 ~~~~~vlI~G~-G~vG~~la~~L~~~g---~~V~vid~~~~~--~~~~~~~~---------------------------- 46 (153)
T 1id1_A 1 HRKDHFIVCGH-SILAINTILQLNQRG---QNVTVISNLPED--DIKQLEQR---------------------------- 46 (153)
T ss_dssp CCCSCEEEECC-SHHHHHHHHHHHHTT---CCEEEEECCCHH--HHHHHHHH----------------------------
T ss_pred CCCCcEEEECC-CHHHHHHHHHHHHCC---CCEEEEECCChH--HHHHHHHh----------------------------
Confidence 34578999995 999999999999998 788999986310 11111111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHH-HhCcCEEEEcCc
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELL-ISQTTIIFHIAA 182 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~-~~~~d~Vih~a~ 182 (366)
....+.++.||..+++ .+.++ +.++|+||-+.+
T Consensus 47 ------------------~~~~~~~i~gd~~~~~------~l~~a~i~~ad~vi~~~~ 80 (153)
T 1id1_A 47 ------------------LGDNADVIPGDSNDSS------VLKKAGIDRCRAILALSD 80 (153)
T ss_dssp ------------------HCTTCEEEESCTTSHH------HHHHHTTTTCSEEEECSS
T ss_pred ------------------hcCCCeEEEcCCCCHH------HHHHcChhhCCEEEEecC
Confidence 0135788999999876 56665 789999998865
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0071 Score=57.84 Aligned_cols=117 Identities=14% Similarity=0.095 Sum_probs=75.0
Q ss_pred CeEEEeCCcchHHHHHHHHHHHh-CCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRC-CPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~-g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+||.|+||+|.+|+.++..|... + -...+.++++.+ ... ....+ +.
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~-~~~el~L~Di~~-~~~--G~a~D---------l~-------------------- 47 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLP-SGSELSLYDIAP-VTP--GVAVD---------LS-------------------- 47 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSC-TTEEEEEECSST-THH--HHHHH---------HH--------------------
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-CCceEEEEecCC-Cch--hHHHH---------hh--------------------
Confidence 58999999999999999988776 4 347899999875 211 11111 00
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh-hhhHHHHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF-DEHIRTAYNINVKGTQTILA 206 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~-~~~~~~~~~~nv~~~~~ll~ 206 (366)
.......+..+.+ .+ ..+.++++|+||.+||.... .+...++++.|....+.+.+
T Consensus 48 -------------~~~~~~~v~~~~~--~~---------~~~~~~~aDivii~ag~~rkpG~~R~dll~~N~~I~~~i~~ 103 (312)
T 3hhp_A 48 -------------HIPTAVKIKGFSG--ED---------ATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQ 103 (312)
T ss_dssp -------------TSCSSEEEEEECS--SC---------CHHHHTTCSEEEECCSCSCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -------------CCCCCceEEEecC--CC---------cHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 1001112222211 11 23567899999999997643 34567889999999999999
Q ss_pred HHHhcCCCcEEEEeeC
Q psy17528 207 LAKRMKGLKSFVHVST 222 (366)
Q Consensus 207 ~a~~~~~~~~~v~iSS 222 (366)
.+.+...-..++.+|.
T Consensus 104 ~i~~~~p~a~vlvvtN 119 (312)
T 3hhp_A 104 QVAKTCPKACIGIITN 119 (312)
T ss_dssp HHHHHCTTSEEEECSS
T ss_pred HHHHHCCCcEEEEecC
Confidence 8887633334555543
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0027 Score=55.04 Aligned_cols=36 Identities=14% Similarity=0.126 Sum_probs=31.0
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHh-CCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRC-CPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~-g~~~~~V~~~~R~~ 85 (366)
+.+++|+|+| .|.+|..+++.|.+. | ..|++++|++
T Consensus 37 ~~~~~v~IiG-~G~~G~~~a~~L~~~~g---~~V~vid~~~ 73 (183)
T 3c85_A 37 PGHAQVLILG-MGRIGTGAYDELRARYG---KISLGIEIRE 73 (183)
T ss_dssp CTTCSEEEEC-CSHHHHHHHHHHHHHHC---SCEEEEESCH
T ss_pred CCCCcEEEEC-CCHHHHHHHHHHHhccC---CeEEEEECCH
Confidence 3467899998 599999999999998 8 7889999874
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0091 Score=57.45 Aligned_cols=117 Identities=14% Similarity=0.053 Sum_probs=74.8
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCH-HHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSI-TQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
.++|.|+|+ |++|+.++..|+..| -+..|.+++++...... ...+.+.
T Consensus 5 ~~kI~ViGa-G~vG~~~a~~l~~~~-~~~~l~l~D~~~~k~~g~a~DL~~~----------------------------- 53 (326)
T 3pqe_A 5 VNKVALIGA-GFVGSSYAFALINQG-ITDELVVIDVNKEKAMGDVMDLNHG----------------------------- 53 (326)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHT-CCSEEEEECSCHHHHHHHHHHHHHT-----------------------------
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCC-CCceEEEEecchHHHHHHHHHHHhc-----------------------------
Confidence 578999996 999999999999986 33589999986321100 0011111
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh-hhHHHHHHHHHHHHHHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD-EHIRTAYNINVKGTQTIL 205 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~-~~~~~~~~~nv~~~~~ll 205 (366)
.+.....+.+...|. +.++++|+||.++|....+ +...++.+.|....+.+.
T Consensus 54 --------------~~~~~~~v~i~~~~~-------------~a~~~aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~ 106 (326)
T 3pqe_A 54 --------------KAFAPQPVKTSYGTY-------------EDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIV 106 (326)
T ss_dssp --------------GGGSSSCCEEEEECG-------------GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHH
T ss_pred --------------cccccCCeEEEeCcH-------------HHhCCCCEEEEecccCCCCCccHHHHHHHHHHHHHHHH
Confidence 000112334433321 2467899999999976433 345678899999999999
Q ss_pred HHHHhcCCCcEEEEeeC
Q psy17528 206 ALAKRMKGLKSFVHVST 222 (366)
Q Consensus 206 ~~a~~~~~~~~~v~iSS 222 (366)
+.+.+...-..++.+|.
T Consensus 107 ~~I~~~~p~a~vlvvtN 123 (326)
T 3pqe_A 107 SEVMASGFDGIFLVATN 123 (326)
T ss_dssp HHHHHTTCCSEEEECSS
T ss_pred HHHHHhcCCeEEEEcCC
Confidence 99888633234444443
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0019 Score=60.58 Aligned_cols=36 Identities=25% Similarity=0.317 Sum_probs=27.0
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEE-EEEcC
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKII-LLIRT 84 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~-~~~R~ 84 (366)
+.++|.|+|++|.+|+.+++.+.+. +. ..|+ +++++
T Consensus 4 ~~mkV~V~Ga~G~mG~~~~~~~~~~-~~-~elva~~d~~ 40 (273)
T 1dih_A 4 ANIRVAIAGAGGRMGRQLIQAALAL-EG-VQLGAALERE 40 (273)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHS-TT-EECCCEECCT
T ss_pred CCcEEEEECCCCHHHHHHHHHHHhC-CC-CEEEEEEecC
Confidence 3468999999999999999998866 33 3444 44444
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0042 Score=55.45 Aligned_cols=73 Identities=12% Similarity=0.176 Sum_probs=53.9
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
|+|+|+|+ |.+|+++++.|.+.| +.|+++++++. ++..+ ...
T Consensus 1 M~iiIiG~-G~~G~~la~~L~~~g---~~v~vid~~~~------~~~~l---------~~~------------------- 42 (218)
T 3l4b_C 1 MKVIIIGG-ETTAYYLARSMLSRK---YGVVIINKDRE------LCEEF---------AKK------------------- 42 (218)
T ss_dssp CCEEEECC-HHHHHHHHHHHHHTT---CCEEEEESCHH------HHHHH---------HHH-------------------
T ss_pred CEEEEECC-CHHHHHHHHHHHhCC---CeEEEEECCHH------HHHHH---------HHH-------------------
Confidence 47999996 999999999999998 78889998642 11111 000
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHH-HhCcCEEEEcCc
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELL-ISQTTIIFHIAA 182 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~-~~~~d~Vih~a~ 182 (366)
..+.++.+|.++.+ .+.++ +.++|+||-+.+
T Consensus 43 -----------------~~~~~i~gd~~~~~------~l~~a~i~~ad~vi~~~~ 74 (218)
T 3l4b_C 43 -----------------LKATIIHGDGSHKE------ILRDAEVSKNDVVVILTP 74 (218)
T ss_dssp -----------------SSSEEEESCTTSHH------HHHHHTCCTTCEEEECCS
T ss_pred -----------------cCCeEEEcCCCCHH------HHHhcCcccCCEEEEecC
Confidence 24678999999876 56665 578999997755
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0057 Score=58.64 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=32.8
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
+++++++|+|+ |.+|..++..|.+.| +.+|+++.|+..
T Consensus 152 l~gk~~lVlGa-GG~g~aia~~L~~~G--a~~V~i~nR~~~ 189 (315)
T 3tnl_A 152 IIGKKMTICGA-GGAATAICIQAALDG--VKEISIFNRKDD 189 (315)
T ss_dssp CTTSEEEEECC-SHHHHHHHHHHHHTT--CSEEEEEECSST
T ss_pred ccCCEEEEECC-ChHHHHHHHHHHHCC--CCEEEEEECCCc
Confidence 46899999997 899999999999987 358999999844
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0022 Score=56.11 Aligned_cols=37 Identities=19% Similarity=0.135 Sum_probs=32.8
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.++++|+|+||+|.||..+++.+...| .+|++++|++
T Consensus 37 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G---~~V~~~~~~~ 73 (198)
T 1pqw_A 37 SPGERVLIHSATGGVGMAAVSIAKMIG---ARIYTTAGSD 73 (198)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHHT---CEEEEEESSH
T ss_pred CCCCEEEEeeCCChHHHHHHHHHHHcC---CEEEEEeCCH
Confidence 357899999999999999999999998 7899998863
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.014 Score=56.26 Aligned_cols=118 Identities=13% Similarity=0.053 Sum_probs=64.6
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
++++|.|+|+ |.+|+.++..|+..| -+..|.+++++.... +....-+. +
T Consensus 8 ~~~kV~ViGa-G~vG~~~a~~l~~~~-~~~el~l~D~~~~k~---~g~a~DL~--------~------------------ 56 (326)
T 3vku_A 8 DHQKVILVGD-GAVGSSYAYAMVLQG-IAQEIGIVDIFKDKT---KGDAIDLE--------D------------------ 56 (326)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHT-CCSEEEEECSCHHHH---HHHHHHHH--------T------------------
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCC-CCCeEEEEeCChHHH---HHHHhhHh--------h------------------
Confidence 4679999996 999999999999986 346899999863211 11100000 0
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh-hhHHHHHHHHHHHHHHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD-EHIRTAYNINVKGTQTIL 205 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~-~~~~~~~~~nv~~~~~ll 205 (366)
.......+.+..+|. +.+.++|+||.+||....+ +...++++.|+...+.+.
T Consensus 57 --------------~~~~~~~~~i~~~~~-------------~a~~~aDiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~ 109 (326)
T 3vku_A 57 --------------ALPFTSPKKIYSAEY-------------SDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIV 109 (326)
T ss_dssp --------------TGGGSCCCEEEECCG-------------GGGTTCSEEEECCCCC----------------CHHHHH
T ss_pred --------------hhhhcCCcEEEECcH-------------HHhcCCCEEEECCCCCCCCCchHHHHHHHHHHHHHHHH
Confidence 000012334443321 3368899999999975433 345567888999999999
Q ss_pred HHHHhcCCCcEEEEeeC
Q psy17528 206 ALAKRMKGLKSFVHVST 222 (366)
Q Consensus 206 ~~a~~~~~~~~~v~iSS 222 (366)
+.+.+...-..++.+|.
T Consensus 110 ~~i~~~~p~a~ilvvtN 126 (326)
T 3vku_A 110 DPIVDSGFNGIFLVAAN 126 (326)
T ss_dssp HHHHTTTCCSEEEECSS
T ss_pred HHHHhcCCceEEEEccC
Confidence 99887633233444443
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.035 Score=52.97 Aligned_cols=116 Identities=13% Similarity=0.110 Sum_probs=70.4
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
.++|.|+|+ |++|+.++..|+..| -+..|.+++.++....... .+ +.+
T Consensus 7 ~~KI~IiGa-G~vG~~~a~~l~~~~-~~~ev~L~Di~~~~~~g~~--~d---------l~~------------------- 54 (318)
T 1y6j_A 7 RSKVAIIGA-GFVGASAAFTMALRQ-TANELVLIDVFKEKAIGEA--MD---------INH------------------- 54 (318)
T ss_dssp CCCEEEECC-SHHHHHHHHHHHHTT-CSSEEEEECCC---CCHHH--HH---------HTT-------------------
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCC-CCCEEEEEeCChHHHHHHH--HH---------HHH-------------------
Confidence 468999997 999999999999886 3568999999765433210 00 000
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh-hhhHHHHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF-DEHIRTAYNINVKGTQTILA 206 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~-~~~~~~~~~~nv~~~~~ll~ 206 (366)
.......+.+... + .+.++++|+||.+++.... .....+....|+...+.+.+
T Consensus 55 -------------~~~~~~~~~i~~~---~----------~~a~~~aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~ 108 (318)
T 1y6j_A 55 -------------GLPFMGQMSLYAG---D----------YSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQ 108 (318)
T ss_dssp -------------SCCCTTCEEEC-----C----------GGGGTTCSEEEECCCC------CHHHHHHHHHHHHHHHHH
T ss_pred -------------hHHhcCCeEEEEC---C----------HHHhCCCCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHH
Confidence 0001123333321 1 1236899999999997542 23445677889999999999
Q ss_pred HHHhcCCCcEEEEeeC
Q psy17528 207 LAKRMKGLKSFVHVST 222 (366)
Q Consensus 207 ~a~~~~~~~~~v~iSS 222 (366)
.+.+. ...-++.+.|
T Consensus 109 ~i~~~-~p~a~viv~t 123 (318)
T 1y6j_A 109 NIMKY-YNHGVILVVS 123 (318)
T ss_dssp HHHHH-CCSCEEEECS
T ss_pred HHHHh-CCCcEEEEec
Confidence 88876 3334444444
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.028 Score=54.53 Aligned_cols=56 Identities=11% Similarity=-0.003 Sum_probs=41.6
Q ss_pred HHHHHhCcCEEEEcCcccCh-hhhHHHHHHHHHHHHHHHHHHHHhcCCC-cEEEEeeC
Q psy17528 167 EELLISQTTIIFHIAATVRF-DEHIRTAYNINVKGTQTILALAKRMKGL-KSFVHVST 222 (366)
Q Consensus 167 ~~~~~~~~d~Vih~a~~~~~-~~~~~~~~~~nv~~~~~ll~~a~~~~~~-~~~v~iSS 222 (366)
....++++|+||-+||...- .+...++++.|....+.+.+.+.+.... ..++.+|.
T Consensus 94 ~~~a~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsN 151 (345)
T 4h7p_A 94 PRVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGN 151 (345)
T ss_dssp HHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred hHHHhCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCC
Confidence 34678999999999998653 3567789999999999999988775222 24445554
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.016 Score=54.92 Aligned_cols=116 Identities=16% Similarity=0.039 Sum_probs=75.3
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcC-HHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTS-ITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
|||.|+|| |.||+.++..|+.++ -+..+.+++..+.... ....+.+..
T Consensus 1 MKV~IiGa-G~VG~~~a~~l~~~~-~~~el~L~Di~~~~~~G~a~DL~h~~----------------------------- 49 (294)
T 2x0j_A 1 MKLGFVGA-GRVGSTSAFTCLLNL-DVDEIALVDIAEDLAVGEAMDLAHAA----------------------------- 49 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHS-CCSEEEEECSSHHHHHHHHHHHHHHH-----------------------------
T ss_pred CEEEEECc-CHHHHHHHHHHHhCC-CCCEEEEEeCCCCcchhhhhhhhccc-----------------------------
Confidence 58999995 999999999999885 6688999998643211 111111100
Q ss_pred ccchhhhhhccccCCCCCCcEEEEe-ccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh-hhhHHHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVC-GQLEADTFGLSARDEELLISQTTIIFHIAATVRF-DEHIRTAYNINVKGTQTIL 205 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~-gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~-~~~~~~~~~~nv~~~~~ll 205 (366)
........+.. .|. +.++++|+||-+||...- .+...++++.|....+.+.
T Consensus 50 --------------~~~~~~~~i~~~~d~-------------~~~~~aDvVvitAG~prkpGmtR~dLl~~Na~I~~~i~ 102 (294)
T 2x0j_A 50 --------------AGIDKYPKIVGGADY-------------SLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIA 102 (294)
T ss_dssp --------------GGGTCCCEEEEESCG-------------GGGTTCSEEEECCCCCCCSSSCHHHHHHHHHHHHHHHH
T ss_pred --------------ccCCCCCeEecCCCH-------------HHhCCCCEEEEecCCCCCCCCchHHHHHHHHHHHHHHH
Confidence 00011122222 222 235789999999997654 3567789999999999999
Q ss_pred HHHHhcCCCcEEEEeeC
Q psy17528 206 ALAKRMKGLKSFVHVST 222 (366)
Q Consensus 206 ~~a~~~~~~~~~v~iSS 222 (366)
+.+.+...-..++.+|.
T Consensus 103 ~~i~~~~p~aivlvvsN 119 (294)
T 2x0j_A 103 KKIVENAPESKILVVTN 119 (294)
T ss_dssp HHHHTTSTTCEEEECSS
T ss_pred HHHHhcCCceEEEEecC
Confidence 99988733333444544
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.038 Score=52.94 Aligned_cols=119 Identities=14% Similarity=0.071 Sum_probs=74.4
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
|++++|.|+|+ |.+|+.++..|...|. . .|.++++++... +....-+.+. ...
T Consensus 3 m~~~kI~iiGa-G~vG~~~a~~l~~~~~-~-~v~l~Di~~~~~---~g~a~dL~~~----~~~----------------- 55 (321)
T 3p7m_A 3 MARKKITLVGA-GNIGGTLAHLALIKQL-G-DVVLFDIAQGMP---NGKALDLLQT----CPI----------------- 55 (321)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTC-C-EEEEECSSSSHH---HHHHHHHHTT----HHH-----------------
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCC-c-eEEEEeCChHHH---HHHHHHHHhh----hhh-----------------
Confidence 56789999995 9999999999998873 2 899999976432 1111111110 000
Q ss_pred ccccchhhhhhccccCCCCCCcEEEE-eccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh-hhHHHHHHHHHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIV-CGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD-EHIRTAYNINVKGTQT 203 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~-~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~-~~~~~~~~~nv~~~~~ 203 (366)
......+. ..| + +.++++|+||.++|....+ ....+++..|+...+.
T Consensus 56 ------------------~~~~~~v~~t~d------------~-~a~~~aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~ 104 (321)
T 3p7m_A 56 ------------------EGVDFKVRGTND------------Y-KDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQT 104 (321)
T ss_dssp ------------------HTCCCCEEEESC------------G-GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHH
T ss_pred ------------------cCCCcEEEEcCC------------H-HHHCCCCEEEEcCCcCCCCCCCHHHHHHHhHHHHHH
Confidence 00111222 122 1 3568899999999976432 3456678889999999
Q ss_pred HHHHHHhcCCCcEEEEeeC
Q psy17528 204 ILALAKRMKGLKSFVHVST 222 (366)
Q Consensus 204 ll~~a~~~~~~~~~v~iSS 222 (366)
+.+.+.+...-..++.+|.
T Consensus 105 i~~~i~~~~p~a~vivvtN 123 (321)
T 3p7m_A 105 VGEGIKHNCPNAFVICITN 123 (321)
T ss_dssp HHHHHHHHCTTCEEEECCS
T ss_pred HHHHHHHHCCCcEEEEecC
Confidence 9998887633234555543
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0054 Score=50.99 Aligned_cols=33 Identities=33% Similarity=0.500 Sum_probs=29.5
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.+|+|+|+ |.+|+.+++.|.+.| +.|+++++++
T Consensus 8 ~~viIiG~-G~~G~~la~~L~~~g---~~v~vid~~~ 40 (140)
T 3fwz_A 8 NHALLVGY-GRVGSLLGEKLLASD---IPLVVIETSR 40 (140)
T ss_dssp SCEEEECC-SHHHHHHHHHHHHTT---CCEEEEESCH
T ss_pred CCEEEECc-CHHHHHHHHHHHHCC---CCEEEEECCH
Confidence 57999996 999999999999998 7899999974
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0086 Score=55.16 Aligned_cols=40 Identities=30% Similarity=0.349 Sum_probs=33.9
Q ss_pred cccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 43 QEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 43 ~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
++.+++++|+|.|+ |.+|+.+++.|.+.| +.+|+++++..
T Consensus 26 q~~l~~~~VlVvG~-Gg~G~~va~~La~~G--v~~i~lvD~d~ 65 (249)
T 1jw9_B 26 QEALKDSRVLIVGL-GGLGCAASQYLASAG--VGNLTLLDFDT 65 (249)
T ss_dssp HHHHHHCEEEEECC-SHHHHHHHHHHHHHT--CSEEEEECCCB
T ss_pred HHHHhCCeEEEEee-CHHHHHHHHHHHHcC--CCeEEEEcCCC
Confidence 44566789999995 889999999999997 46899999875
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0053 Score=59.72 Aligned_cols=39 Identities=21% Similarity=0.259 Sum_probs=29.1
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhC-CC--ccEEEEEEcC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCC-PQ--IRKIILLIRT 84 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g-~~--~~~V~~~~R~ 84 (366)
|++++|+|.||||++|+.+++.|++++ +. ...|.++.+.
T Consensus 7 M~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~ 48 (352)
T 2nqt_A 7 ANATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAA 48 (352)
T ss_dssp CSCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEES
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECC
Confidence 445799999999999999999998872 00 2456666543
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.03 Score=53.71 Aligned_cols=120 Identities=13% Similarity=0.072 Sum_probs=72.8
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCH-HHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSI-TQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
.|++++|.|+|| |.+|+.++..|...|. . .|.++++++..... ...+.+... + +
T Consensus 4 ~m~~~kI~viGa-G~vG~~~a~~l~~~~~-~-~v~L~Di~~~~~~g~~~dl~~~~~---~--~----------------- 58 (324)
T 3gvi_A 4 SMARNKIALIGS-GMIGGTLAHLAGLKEL-G-DVVLFDIAEGTPQGKGLDIAESSP---V--D----------------- 58 (324)
T ss_dssp --CCCEEEEECC-SHHHHHHHHHHHHTTC-C-EEEEECSSSSHHHHHHHHHHHHHH---H--H-----------------
T ss_pred CCcCCEEEEECC-CHHHHHHHHHHHhCCC-C-eEEEEeCCchhHHHHHHHHhchhh---h--c-----------------
Confidence 466789999998 9999999999999873 2 89999997643210 111111100 0 0
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh-hhHHHHHHHHHHHHH
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD-EHIRTAYNINVKGTQ 202 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~-~~~~~~~~~nv~~~~ 202 (366)
....++.. ..| + +.++++|+||.++|....+ ....+++..|+...+
T Consensus 59 -------------------~~~~~v~~-t~d------------~-~a~~~aDiVIiaag~p~k~G~~R~dl~~~N~~i~~ 105 (324)
T 3gvi_A 59 -------------------GFDAKFTG-AND------------Y-AAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVME 105 (324)
T ss_dssp -------------------TCCCCEEE-ESS------------G-GGGTTCSEEEECCSCCCC-----CHHHHHHHHHHH
T ss_pred -------------------CCCCEEEE-eCC------------H-HHHCCCCEEEEccCcCCCCCCCHHHHHHhhHHHHH
Confidence 00112221 122 2 3568999999999975432 234467788999999
Q ss_pred HHHHHHHhcCCCcEEEEeeC
Q psy17528 203 TILALAKRMKGLKSFVHVST 222 (366)
Q Consensus 203 ~ll~~a~~~~~~~~~v~iSS 222 (366)
.+.+.+.+...-..++.+|.
T Consensus 106 ~i~~~i~~~~p~a~iivvtN 125 (324)
T 3gvi_A 106 QVGAGIKKYAPEAFVICITN 125 (324)
T ss_dssp HHHHHHHHHCTTCEEEECCS
T ss_pred HHHHHHHHHCCCeEEEecCC
Confidence 99998887633334555554
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.052 Score=52.07 Aligned_cols=118 Identities=14% Similarity=0.087 Sum_probs=70.8
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
.++|.|+|| |.+|..++..|...|. ..|.++++++... +.....+.. .+..
T Consensus 9 ~~kI~VIGa-G~vG~~lA~~la~~g~--~~V~L~D~~~~~~---~~~~~~l~~----~~~~------------------- 59 (331)
T 1pzg_A 9 RKKVAMIGS-GMIGGTMGYLCALREL--ADVVLYDVVKGMP---EGKALDLSH----VTSV------------------- 59 (331)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTC--CEEEEECSSSSHH---HHHHHHHHH----HHHH-------------------
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--CeEEEEECChhHH---HHHHHHHHh----hhhc-------------------
Confidence 368999997 9999999999999873 2699999975422 111111111 0000
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh-h-----hHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD-E-----HIRTAYNINVKGT 201 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~-~-----~~~~~~~~nv~~~ 201 (366)
.. ...++... . ++.+.++++|+||-+++..... . ........|....
T Consensus 60 -------------~~-~~~~i~~t-------~------d~~ea~~~aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~ 112 (331)
T 1pzg_A 60 -------------VD-TNVSVRAE-------Y------SYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKII 112 (331)
T ss_dssp -------------TT-CCCCEEEE-------C------SHHHHHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHH
T ss_pred -------------cC-CCCEEEEe-------C------CHHHHhCCCCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHH
Confidence 00 01222221 1 3555789999999999865322 1 2334566788888
Q ss_pred HHHHHHHHhcCCCcEEEEeeC
Q psy17528 202 QTILALAKRMKGLKSFVHVST 222 (366)
Q Consensus 202 ~~ll~~a~~~~~~~~~v~iSS 222 (366)
+.+.+.+.+.. ..-++.+.|
T Consensus 113 ~~i~~~i~~~~-p~a~vi~~t 132 (331)
T 1pzg_A 113 REIGQNIKKYC-PKTFIIVVT 132 (331)
T ss_dssp HHHHHHHHHHC-TTCEEEECC
T ss_pred HHHHHHHHHHC-CCcEEEEEc
Confidence 88888887763 333443333
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.034 Score=52.57 Aligned_cols=116 Identities=16% Similarity=0.023 Sum_probs=74.0
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCH-HHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSI-TQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
|+|.|+|+ |.+|+.++..|...| .+..|.++++++..... ...+.+...
T Consensus 1 MkI~ViGa-G~vG~~la~~l~~~~-~~~~v~L~D~~~~~~~g~~~dl~~~~~---------------------------- 50 (294)
T 1oju_A 1 MKLGFVGA-GRVGSTSAFTCLLNL-DVDEIALVDIAEDLAVGEAMDLAHAAA---------------------------- 50 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHS-CCSEEEEECSSHHHHHHHHHHHHHHHH----------------------------
T ss_pred CEEEEECC-CHHHHHHHHHHHhCC-CCCeEEEEECChHHHHHHHHHHHhhhh----------------------------
Confidence 58999998 999999999999986 33589999997532110 001111100
Q ss_pred ccchhhhhhccccCCCCCCcEEEE-eccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh-hhHHHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIV-CGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD-EHIRTAYNINVKGTQTIL 205 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~-~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~-~~~~~~~~~nv~~~~~ll 205 (366)
.......+. ..| .+.++++|+||.++|....+ +...++...|....+.+.
T Consensus 51 ---------------~~~~~~~i~~t~d-------------~~a~~~aDiVViaag~~~kpG~~R~dl~~~N~~i~~~i~ 102 (294)
T 1oju_A 51 ---------------GIDKYPKIVGGAD-------------YSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIA 102 (294)
T ss_dssp ---------------TTTCCCEEEEESC-------------GGGGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHH
T ss_pred ---------------hcCCCCEEEEeCC-------------HHHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 000112222 122 13468899999999976432 445678889999999999
Q ss_pred HHHHhcCCCcEEEEeeC
Q psy17528 206 ALAKRMKGLKSFVHVST 222 (366)
Q Consensus 206 ~~a~~~~~~~~~v~iSS 222 (366)
+.+.+...-..++.+|.
T Consensus 103 ~~i~~~~p~a~iivvsN 119 (294)
T 1oju_A 103 KKIVENAPESKILVVTN 119 (294)
T ss_dssp HHHHTTSTTCEEEECSS
T ss_pred HHHHhhCCCeEEEEeCC
Confidence 99888733344555554
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.045 Score=52.13 Aligned_cols=119 Identities=12% Similarity=0.107 Sum_probs=73.5
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
|+.++|.|+|| |.+|+.++..|...| -+..|.++++++... +....-+.+ .. .
T Consensus 4 m~~~KI~IIGa-G~vG~~la~~l~~~~-~~~ei~L~Di~~~~~---~g~~~dl~~----~~-~----------------- 56 (317)
T 3d0o_A 4 FKGNKVVLIGN-GAVGSSYAFSLVNQS-IVDELVIIDLDTEKV---RGDVMDLKH----AT-P----------------- 56 (317)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHC-SCSEEEEECSCHHHH---HHHHHHHHH----HG-G-----------------
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCC-CCCEEEEEeCChhHh---hhhhhhHHh----hh-h-----------------
Confidence 45679999998 999999999999886 346888888863211 111011111 00 0
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh-hhhHHHHHHHHHHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF-DEHIRTAYNINVKGTQTI 204 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~-~~~~~~~~~~nv~~~~~l 204 (366)
.....+.+.. | + .+.++++|+||.+++.... ..........|....+.+
T Consensus 57 -----------------~~~~~~~v~~-~--~----------~~a~~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i 106 (317)
T 3d0o_A 57 -----------------YSPTTVRVKA-G--E----------YSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSI 106 (317)
T ss_dssp -----------------GSSSCCEEEE-C--C----------GGGGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHH
T ss_pred -----------------hcCCCeEEEe-C--C----------HHHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHH
Confidence 0012233332 2 1 1336899999999997643 234456778899999999
Q ss_pred HHHHHhcCCCcEEEEeeC
Q psy17528 205 LALAKRMKGLKSFVHVST 222 (366)
Q Consensus 205 l~~a~~~~~~~~~v~iSS 222 (366)
.+.+.+. ...-++.+.|
T Consensus 107 ~~~i~~~-~p~a~viv~t 123 (317)
T 3d0o_A 107 VGEVMAS-KFDGIFLVAT 123 (317)
T ss_dssp HHHHHHT-TCCSEEEECS
T ss_pred HHHHHHh-CCCcEEEEec
Confidence 9988876 3334444433
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.014 Score=55.86 Aligned_cols=38 Identities=26% Similarity=0.288 Sum_probs=33.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
.++++|||+||+|.+|..+++.+...| .+|++++|++.
T Consensus 168 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G---a~V~~~~~~~~ 205 (347)
T 2hcy_A 168 MAGHWVAISGAAGGLGSLAVQYAKAMG---YRVLGIDGGEG 205 (347)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECSTT
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CcEEEEcCCHH
Confidence 457899999999999999999999888 68999998754
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.03 Score=54.89 Aligned_cols=55 Identities=11% Similarity=-0.061 Sum_probs=40.6
Q ss_pred HHHHhCcCEEEEcCcccC-hhhhHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeC
Q psy17528 168 ELLISQTTIIFHIAATVR-FDEHIRTAYNINVKGTQTILALAKRM-KGLKSFVHVST 222 (366)
Q Consensus 168 ~~~~~~~d~Vih~a~~~~-~~~~~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS 222 (366)
...++++|+||-+||... ..+...++.+.|....+.+.+.+.+. ..-..++.+|.
T Consensus 103 y~~~~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsN 159 (375)
T 7mdh_A 103 YEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN 159 (375)
T ss_dssp HHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred HHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 356789999999999764 33466788999999999998888764 23334555554
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.049 Score=52.23 Aligned_cols=117 Identities=13% Similarity=0.054 Sum_probs=71.6
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
.+||.|+|| |.+|+.++..|+..+ -+..|.++++..... +....-+.+ .
T Consensus 9 ~~KI~IiGa-G~vG~~la~~l~~~~-~~~el~L~Di~~~~~---~g~~~dl~~-----------------------~--- 57 (326)
T 2zqz_A 9 HQKVILVGD-GAVGSSYAYAMVLQG-IAQEIGIVDIFKDKT---KGDAIDLSN-----------------------A--- 57 (326)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHT-CCSEEEEECSCHHHH---HHHHHHHHT-----------------------T---
T ss_pred CCEEEEECC-CHHHHHHHHHHHcCC-CCCEEEEEeCCchHh---HHHHHHHHH-----------------------H---
Confidence 478999998 999999999998885 456899999853211 110100000 0
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh-hhHHHHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD-EHIRTAYNINVKGTQTILA 206 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~-~~~~~~~~~nv~~~~~ll~ 206 (366)
. .....+.+.. | + .+.++++|+||..++..... +...+....|+...+.+.+
T Consensus 58 -------------~-~~~~~~~i~~-~--~----------~~a~~~aDvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~ 110 (326)
T 2zqz_A 58 -------------L-PFTSPKKIYS-A--E----------YSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVD 110 (326)
T ss_dssp -------------G-GGSCCCEEEE-C--C----------GGGGGGCSEEEECCCCC-----CHHHHHHHHHHHHHHHHH
T ss_pred -------------H-HhcCCeEEEE-C--C----------HHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 0 0112333332 1 1 13368999999999975432 3345677889999999998
Q ss_pred HHHhcCCCcEEEEeeC
Q psy17528 207 LAKRMKGLKSFVHVST 222 (366)
Q Consensus 207 ~a~~~~~~~~~v~iSS 222 (366)
.+.+...-..++.+|-
T Consensus 111 ~i~~~~p~a~iiv~tN 126 (326)
T 2zqz_A 111 PIVDSGFNGIFLVAAN 126 (326)
T ss_dssp HHHHHTCCSEEEECSS
T ss_pred HHHHHCCCeEEEEeCC
Confidence 8877633334554433
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.031 Score=52.92 Aligned_cols=45 Identities=29% Similarity=0.369 Sum_probs=34.7
Q ss_pred ccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcC
Q psy17528 42 IQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTS 89 (366)
Q Consensus 42 ~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~ 89 (366)
-++.++.++|+|.|+ |.+|+.+++.|.+.| +.++.+++...-..+
T Consensus 30 ~q~kL~~~~VlVvGa-GGlGs~va~~La~aG--VG~i~lvD~D~Ve~s 74 (292)
T 3h8v_A 30 DYEKIRTFAVAIVGV-GGVGSVTAEMLTRCG--IGKLLLFDYDKVELA 74 (292)
T ss_dssp --CGGGGCEEEEECC-SHHHHHHHHHHHHHT--CSEEEEECCCBC---
T ss_pred HHHHHhCCeEEEECc-CHHHHHHHHHHHHcC--CCEEEEECCCccChh
Confidence 356677899999995 889999999999996 689999998764433
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.04 Score=53.13 Aligned_cols=34 Identities=29% Similarity=0.343 Sum_probs=27.3
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEE
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLI 82 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~ 82 (366)
++|+|.||||++|+.+++.|++++.....+.++.
T Consensus 7 ~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~ 40 (340)
T 2hjs_A 7 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLA 40 (340)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEE
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 5899999999999999999987654445555554
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=95.89 E-value=0.029 Score=54.00 Aligned_cols=120 Identities=13% Similarity=0.080 Sum_probs=74.5
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
....++|.|+|+ |.+|+.++..|+..| .+..|.+++++.... +....-+.+
T Consensus 16 ~~~~~kV~ViGa-G~vG~~~a~~l~~~~-~~~el~L~Di~~~~~---~g~a~DL~~------------------------ 66 (331)
T 4aj2_A 16 QVPQNKITVVGV-GAVGMACAISILMKD-LADELALVDVIEDKL---KGEMMDLQH------------------------ 66 (331)
T ss_dssp -CCSSEEEEECC-SHHHHHHHHHHHHTT-CCSEEEEECSCHHHH---HHHHHHHHH------------------------
T ss_pred cCCCCEEEEECC-CHHHHHHHHHHHhCC-CCceEEEEeCChHHH---HHHHHhhhh------------------------
Confidence 345689999997 999999999999986 446899999863211 111110110
Q ss_pred cccccchhhhhhccccCCCCCCcEEEE-eccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh-hhHHHHHHHHHHHHH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIV-CGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD-EHIRTAYNINVKGTQ 202 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~-~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~-~~~~~~~~~nv~~~~ 202 (366)
.........++ ..| +. .++++|+||.+||...-+ +...++++.|....+
T Consensus 67 ----------------~~~~~~~~~i~~~~d------------~~-~~~~aDiVvi~aG~~~kpG~tR~dL~~~N~~I~~ 117 (331)
T 4aj2_A 67 ----------------GSLFLKTPKIVSSKD------------YS-VTANSKLVIITAGARQQEGESRLNLVQRNVNIFK 117 (331)
T ss_dssp ----------------TGGGCSCCEEEECSS------------GG-GGTTEEEEEECCSCCCCTTCCGGGGHHHHHHHHH
T ss_pred ----------------hhhccCCCeEEEcCC------------HH-HhCCCCEEEEccCCCCCCCccHHHHHHHHHHHHH
Confidence 00000111122 222 22 368999999999976432 345578899999999
Q ss_pred HHHHHHHhcCCCcEEEEeeC
Q psy17528 203 TILALAKRMKGLKSFVHVST 222 (366)
Q Consensus 203 ~ll~~a~~~~~~~~~v~iSS 222 (366)
.+.+.+.+...-..++.+|.
T Consensus 118 ~i~~~i~~~~p~a~vlvvtN 137 (331)
T 4aj2_A 118 FIIPNVVKYSPQCKLLIVSN 137 (331)
T ss_dssp HHHHHHHHHCTTCEEEECSS
T ss_pred HHHHHHHHHCCCeEEEEecC
Confidence 99998887633334555554
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=95.84 E-value=0.021 Score=52.67 Aligned_cols=40 Identities=23% Similarity=0.250 Sum_probs=33.3
Q ss_pred cccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 43 QEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 43 ~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
++.++.++|+|.|+ |.+|+++++.|.+.| +.+++++++..
T Consensus 23 q~~l~~~~VlvvG~-GglG~~va~~La~~G--vg~i~lvD~d~ 62 (251)
T 1zud_1 23 QQKLLDSQVLIIGL-GGLGTPAALYLAGAG--VGTLVLADDDD 62 (251)
T ss_dssp HHHHHTCEEEEECC-STTHHHHHHHHHHTT--CSEEEEECCCB
T ss_pred HHHHhcCcEEEEcc-CHHHHHHHHHHHHcC--CCeEEEEeCCC
Confidence 45667899999997 669999999999996 57888887754
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.092 Score=50.10 Aligned_cols=121 Identities=12% Similarity=0.070 Sum_probs=73.7
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
+.++|.|+|+ |.+|+.++..|...|. ..|+++++++... ..+....-+ .+.....
T Consensus 7 ~~~kv~ViGa-G~vG~~ia~~l~~~g~--~~v~l~D~~~~~~-~~~g~a~dl----~~~~~~~----------------- 61 (315)
T 3tl2_A 7 KRKKVSVIGA-GFTGATTAFLLAQKEL--ADVVLVDIPQLEN-PTKGKALDM----LEASPVQ----------------- 61 (315)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCGGGHH-HHHHHHHHH----HHHHHHH-----------------
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC--CeEEEEeccchHH-HHHHhhhhH----HHhhhhc-----------------
Confidence 4579999996 9999999999999872 4899999973110 111111000 0100000
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh-hhHHHHHHHHHHHHHHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD-EHIRTAYNINVKGTQTIL 205 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~-~~~~~~~~~nv~~~~~ll 205 (366)
....++.. ..|. +.++++|+||.++|....+ +...++++.|....+.+.
T Consensus 62 ----------------~~~~~i~~-t~d~-------------~a~~~aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~ 111 (315)
T 3tl2_A 62 ----------------GFDANIIG-TSDY-------------ADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSIT 111 (315)
T ss_dssp ----------------TCCCCEEE-ESCG-------------GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHH
T ss_pred ----------------cCCCEEEE-cCCH-------------HHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 00112221 1111 3468899999999976433 456678899999999999
Q ss_pred HHHHhcCCCcEEEEeeC
Q psy17528 206 ALAKRMKGLKSFVHVST 222 (366)
Q Consensus 206 ~~a~~~~~~~~~v~iSS 222 (366)
+.+.+...-..++.+|.
T Consensus 112 ~~i~~~~p~a~vlvvsN 128 (315)
T 3tl2_A 112 RDIAKHSPNAIIVVLTN 128 (315)
T ss_dssp HHHHHHCTTCEEEECCS
T ss_pred HHHHHhCCCeEEEECCC
Confidence 98887633334555554
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=95.82 E-value=0.042 Score=52.44 Aligned_cols=116 Identities=12% Similarity=0.057 Sum_probs=68.8
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
++|.|+|| |.+|+.++..|+..+ -+..|.++++..... +....-+.+ .
T Consensus 6 ~KI~IiGa-G~vG~~~a~~l~~~~-~~~el~L~Di~~~~~---~g~~~dl~~----~----------------------- 53 (318)
T 1ez4_A 6 QKVVLVGD-GAVGSSYAFAMAQQG-IAEEFVIVDVVKDRT---KGDALDLED----A----------------------- 53 (318)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHT-CCSEEEEECSSHHHH---HHHHHHHHG----G-----------------------
T ss_pred CEEEEECC-CHHHHHHHHHHHcCC-CCCEEEEEeCCchHH---HHHHHHHHH----H-----------------------
Confidence 68999998 999999999999885 456899999853211 111111110 0
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh-hhHHHHHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD-EHIRTAYNINVKGTQTILAL 207 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~-~~~~~~~~~nv~~~~~ll~~ 207 (366)
.+ ....+.+.. | + .+.++++|+||.+++..... +...+....|+...+.+.+.
T Consensus 54 ------------~~-~~~~~~v~~-~--~----------~~a~~~aDvVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~ 107 (318)
T 1ez4_A 54 ------------QA-FTAPKKIYS-G--E----------YSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKP 107 (318)
T ss_dssp ------------GG-GSCCCEEEE-C--C----------GGGGTTCSEEEECCCC----------CHHHHHHHHHHHHHH
T ss_pred ------------HH-hcCCeEEEE-C--C----------HHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 00 012333332 2 1 13368999999999975432 23345677899999999998
Q ss_pred HHhcCCCcEEEEeeC
Q psy17528 208 AKRMKGLKSFVHVST 222 (366)
Q Consensus 208 a~~~~~~~~~v~iSS 222 (366)
+.+...-..++.+|-
T Consensus 108 i~~~~p~a~iiv~tN 122 (318)
T 1ez4_A 108 VVDSGFDGIFLVAAN 122 (318)
T ss_dssp HHHTTCCSEEEECSS
T ss_pred HHHhCCCeEEEEeCC
Confidence 887633334444433
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=95.79 E-value=0.054 Score=51.48 Aligned_cols=116 Identities=13% Similarity=0.070 Sum_probs=72.8
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
+||.|+|| |.+|+.++..|+..+ -+..|.+++++... +..... .+.+
T Consensus 1 ~KI~IiGa-G~vG~~~a~~l~~~~-~~~el~L~Di~~~k------~~g~a~-----dl~~-------------------- 47 (310)
T 2xxj_A 1 MKVGIVGS-GMVGSATAYALALLG-VAREVVLVDLDRKL------AQAHAE-----DILH-------------------- 47 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT-CCSEEEEECSSHHH------HHHHHH-----HHHT--------------------
T ss_pred CEEEEECC-CHHHHHHHHHHHhCC-CCCEEEEEeCChhH------HHHHHH-----HHHH--------------------
Confidence 58999998 999999999998885 46789999986321 111000 0000
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh-hhhHHHHHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF-DEHIRTAYNINVKGTQTILAL 207 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~-~~~~~~~~~~nv~~~~~ll~~ 207 (366)
.......+.+..+| . +.++++|+||.+++.... .....+....|+...+.+.+.
T Consensus 48 ------------~~~~~~~~~v~~~~---~----------~a~~~aD~Vii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~ 102 (310)
T 2xxj_A 48 ------------ATPFAHPVWVWAGS---Y----------GDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPR 102 (310)
T ss_dssp ------------TGGGSCCCEEEECC---G----------GGGTTEEEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ------------hHhhcCCeEEEECC---H----------HHhCCCCEEEECCCCCCCCCcCHHHHHHhhHHHHHHHHHH
Confidence 00001233333321 1 236899999999997543 234456778899999999998
Q ss_pred HHhcCCCcEEEEeeC
Q psy17528 208 AKRMKGLKSFVHVST 222 (366)
Q Consensus 208 a~~~~~~~~~v~iSS 222 (366)
+.+...-..++.+|.
T Consensus 103 i~~~~p~a~iiv~tN 117 (310)
T 2xxj_A 103 VLEAAPEAVLLVATN 117 (310)
T ss_dssp HHHHCTTCEEEECSS
T ss_pred HHHHCCCcEEEEecC
Confidence 887633334554433
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.77 E-value=0.01 Score=56.11 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=33.1
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.++++|+|+||+|.+|..+++.+...| .+|++++|++
T Consensus 139 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G---~~V~~~~~~~ 175 (327)
T 1qor_A 139 KPDEQFLFHAAAGGVGLIACQWAKALG---AKLIGTVGTA 175 (327)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHHT---CEEEEEESSH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcC---CEEEEEeCCH
Confidence 357899999999999999999999998 7899998864
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.22 Score=47.40 Aligned_cols=117 Identities=9% Similarity=0.003 Sum_probs=71.5
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHH-HHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSIT-QRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
|+|.|+|+ |.+|+.++..|+..| -+..|+++++++...... ..+.+... .
T Consensus 1 Mkv~ViGa-G~vG~~~a~~l~~~~-~~~el~l~D~~~~k~~g~a~DL~~~~~--------~------------------- 51 (314)
T 3nep_X 1 MKVTVIGA-GNVGATVAECVARQD-VAKEVVMVDIKDGMPQGKALDMRESSP--------I------------------- 51 (314)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHT-CSSEEEEECSSTTHHHHHHHHHHHHHH--------H-------------------
T ss_pred CEEEEECC-CHHHHHHHHHHHhCC-CCCEEEEEeCchHHHHHHHHHHhcccc--------c-------------------
Confidence 58999996 999999999999986 346899999986432110 11111100 0
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh-hhHHHHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD-EHIRTAYNINVKGTQTILA 206 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~-~~~~~~~~~nv~~~~~ll~ 206 (366)
....+.+...+. . +.++++|+||.++|....+ +...++++.|+...+.+.+
T Consensus 52 ----------------~~~~~~v~~~~~---~---------~a~~~aDvVii~ag~~~kpG~~R~dl~~~N~~i~~~i~~ 103 (314)
T 3nep_X 52 ----------------HGFDTRVTGTND---Y---------GPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTE 103 (314)
T ss_dssp ----------------HTCCCEEEEESS---S---------GGGTTCSEEEECCCC-------CHHHHHHHHHHHHHHHH
T ss_pred ----------------cCCCcEEEECCC---H---------HHhCCCCEEEECCCCCCCCCCCHHHHHHhhHHHHHHHHH
Confidence 001222221111 1 3468899999999976432 3445788899999999999
Q ss_pred HHHhcCCCcEEEEeeC
Q psy17528 207 LAKRMKGLKSFVHVST 222 (366)
Q Consensus 207 ~a~~~~~~~~~v~iSS 222 (366)
.+.+...-..++.+|.
T Consensus 104 ~i~~~~p~a~vivvtN 119 (314)
T 3nep_X 104 QFVEGSPDSTIIVVAN 119 (314)
T ss_dssp HHHTTCTTCEEEECCS
T ss_pred HHHHhCCCcEEEecCC
Confidence 9887633334444444
|
| >1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1 | Back alignment and structure |
|---|
Probab=95.70 E-value=0.037 Score=52.89 Aligned_cols=38 Identities=26% Similarity=0.461 Sum_probs=33.1
Q ss_pred CCCCe-EEEe-CCc-----------------chHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 46 YKDQT-IFIT-GAT-----------------GFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 46 ~~~~~-ilIt-Gat-----------------G~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
+++++ |||| |+| |-.|.++++.+++.| ..|+++.|..+
T Consensus 34 l~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~G---a~V~lv~g~~s 90 (313)
T 1p9o_A 34 AQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAG---YGVLFLYRARS 90 (313)
T ss_dssp HTTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTT---CEEEEEEETTS
T ss_pred hcCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCC---CEEEEEecCCC
Confidence 56777 9999 667 999999999999999 89999999754
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0084 Score=56.92 Aligned_cols=37 Identities=16% Similarity=0.180 Sum_probs=32.9
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.++++|+|+||+|.||..+++.+...| .+|++++|++
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G---~~V~~~~~~~ 180 (333)
T 1v3u_A 144 KGGETVLVSAAAGAVGSVVGQIAKLKG---CKVVGAAGSD 180 (333)
T ss_dssp CSSCEEEEESTTBHHHHHHHHHHHHTT---CEEEEEESSH
T ss_pred CCCCEEEEecCCCcHHHHHHHHHHHCC---CEEEEEeCCH
Confidence 457899999999999999999999998 6899998863
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.028 Score=53.71 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=32.7
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
.++++++|+|+ |.+|..++..|.+.| +.+|+++.|+.+
T Consensus 146 l~gk~~lVlGA-GGaaraia~~L~~~G--~~~v~v~nRt~~ 183 (312)
T 3t4e_A 146 MRGKTMVLLGA-GGAATAIGAQAAIEG--IKEIKLFNRKDD 183 (312)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTT--CSEEEEEECSST
T ss_pred cCCCEEEEECc-CHHHHHHHHHHHHcC--CCEEEEEECCCc
Confidence 46899999997 889999999999986 468999999844
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.011 Score=57.58 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=33.0
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.+++++|+|+|+ |.+|..+++.+...| .+|++++|+.
T Consensus 163 ~l~~~~V~ViGa-G~iG~~~a~~l~~~G---a~V~~~d~~~ 199 (369)
T 2eez_A 163 GVAPASVVILGG-GTVGTNAAKIALGMG---AQVTILDVNH 199 (369)
T ss_dssp BBCCCEEEEECC-SHHHHHHHHHHHHTT---CEEEEEESCH
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCC---CEEEEEECCH
Confidence 356799999998 999999999999998 6899999874
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.065 Score=50.77 Aligned_cols=116 Identities=18% Similarity=0.149 Sum_probs=67.7
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
++|.|+|| |++|+.++..|...|. + .|.++++++... +....-+.+ .....
T Consensus 3 ~kI~VIGa-G~vG~~~a~~la~~g~-~-~v~L~Di~~~~~---~g~~~dl~~----~~~~~------------------- 53 (309)
T 1ur5_A 3 KKISIIGA-GFVGSTTAHWLAAKEL-G-DIVLLDIVEGVP---QGKALDLYE----ASPIE------------------- 53 (309)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-S-EEEEECSSSSHH---HHHHHHHHT----THHHH-------------------
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC-C-eEEEEeCCccHH---HHHHHhHHH----hHhhc-------------------
Confidence 68999998 9999999999988862 2 588888875322 111111110 00000
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhh-hHHHHHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDE-HIRTAYNINVKGTQTILAL 207 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~-~~~~~~~~nv~~~~~ll~~ 207 (366)
. ...++.. ..| + +.++++|+||.++|...... ...+....|....+.+.+.
T Consensus 54 ------------~--~~~~i~~-t~d------------~-~a~~~aD~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~ 105 (309)
T 1ur5_A 54 ------------G--FDVRVTG-TNN------------Y-ADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQ 105 (309)
T ss_dssp ------------T--CCCCEEE-ESC------------G-GGGTTCSEEEECCCC--------CHHHHHHHHHHHHHHHH
T ss_pred ------------C--CCeEEEE-CCC------------H-HHHCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 0 0112221 122 2 34688999999998754322 2234567788888999998
Q ss_pred HHhcCCCcEEEEeeC
Q psy17528 208 AKRMKGLKSFVHVST 222 (366)
Q Consensus 208 a~~~~~~~~~v~iSS 222 (366)
+.+. ....++.+.|
T Consensus 106 i~~~-~p~a~vi~~t 119 (309)
T 1ur5_A 106 AAPL-SPNAVIIMVN 119 (309)
T ss_dssp HGGG-CTTCEEEECC
T ss_pred HHhh-CCCeEEEEcC
Confidence 8876 3555555544
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0037 Score=56.38 Aligned_cols=71 Identities=11% Similarity=0.010 Sum_probs=52.5
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
.++|+|+|+ |.+|+.+++.|.+.| + |+++++++.. +.. +
T Consensus 9 ~~~viI~G~-G~~G~~la~~L~~~g---~-v~vid~~~~~------~~~---------~--------------------- 47 (234)
T 2aef_A 9 SRHVVICGW-SESTLECLRELRGSE---V-FVLAEDENVR------KKV---------L--------------------- 47 (234)
T ss_dssp -CEEEEESC-CHHHHHHHHHSTTSE---E-EEEESCGGGH------HHH---------H---------------------
T ss_pred CCEEEEECC-ChHHHHHHHHHHhCC---e-EEEEECCHHH------HHH---------H---------------------
Confidence 468999997 999999999999887 6 8888876431 100 0
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHH-HhCcCEEEEcCc
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELL-ISQTTIIFHIAA 182 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~-~~~~d~Vih~a~ 182 (366)
. ..+.++.+|.++.+ .+.++ ++++|.||.+.+
T Consensus 48 -------------~----~~~~~i~gd~~~~~------~l~~a~i~~ad~vi~~~~ 80 (234)
T 2aef_A 48 -------------R----SGANFVHGDPTRVS------DLEKANVRGARAVIVDLE 80 (234)
T ss_dssp -------------H----TTCEEEESCTTCHH------HHHHTTCTTCSEEEECCS
T ss_pred -------------h----cCCeEEEcCCCCHH------HHHhcCcchhcEEEEcCC
Confidence 0 24678999999876 56655 678999998765
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.014 Score=55.45 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=33.1
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.++++|+|+||+|.+|..+++.+...| .+|++++|++
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G---~~Vi~~~~~~ 180 (333)
T 1wly_A 144 KPGDYVLIHAAAGGMGHIMVPWARHLG---ATVIGTVSTE 180 (333)
T ss_dssp CTTCEEEETTTTSTTHHHHHHHHHHTT---CEEEEEESSH
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCC---CEEEEEeCCH
Confidence 357899999999999999999999998 7899999874
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.019 Score=55.15 Aligned_cols=37 Identities=5% Similarity=0.033 Sum_probs=33.0
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.++++|+|+||+|.||..+++.+...| .+|++++|++
T Consensus 161 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G---a~Vi~~~~~~ 197 (354)
T 2j8z_A 161 QAGDYVLIHAGLSGVGTAAIQLTRMAG---AIPLVTAGSQ 197 (354)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEESCH
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHcC---CEEEEEeCCH
Confidence 457899999999999999999999988 6899999864
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.11 Score=49.39 Aligned_cols=108 Identities=18% Similarity=0.127 Sum_probs=66.3
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
+.++|.|+|+ |.+|+.++..|...| -+..|.++++++.. .+....-+. +.
T Consensus 5 ~~~kI~IIGa-G~vG~sla~~l~~~~-~~~ev~l~Di~~~~---~~~~~~dl~----~~--------------------- 54 (316)
T 1ldn_A 5 GGARVVVIGA-GFVGASYVFALMNQG-IADEIVLIDANESK---AIGDAMDFN----HG--------------------- 54 (316)
T ss_dssp TSCEEEEECC-SHHHHHHHHHHHHHT-CCSEEEEECSSHHH---HHHHHHHHH----HH---------------------
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhCC-CCCEEEEEeCCcch---HHHHHhhHH----HH---------------------
Confidence 3579999998 999999999998886 34689999997421 111111000 00
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh-hhHHHHHHHHHHHHHHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD-EHIRTAYNINVKGTQTIL 205 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~-~~~~~~~~~nv~~~~~ll 205 (366)
.......+.+...+ . +.++++|+||.+++..... ....+....|....+.+.
T Consensus 55 --------------~~~~~~~~~i~~~~----~---------~al~~aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~ 107 (316)
T 1ldn_A 55 --------------KVFAPKPVDIWHGD----Y---------DDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIV 107 (316)
T ss_dssp --------------TTSSSSCCEEEECC----G---------GGTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHH
T ss_pred --------------hhhcCCCeEEEcCc----H---------HHhCCCCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHH
Confidence 11111233444211 1 2367899999999875422 122344567888888888
Q ss_pred HHHHhc
Q psy17528 206 ALAKRM 211 (366)
Q Consensus 206 ~~a~~~ 211 (366)
+.+.+.
T Consensus 108 ~~i~~~ 113 (316)
T 1ldn_A 108 ESVMAS 113 (316)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887775
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=95.26 E-value=0.24 Score=46.82 Aligned_cols=114 Identities=12% Similarity=0.126 Sum_probs=68.7
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
++++|.|+|| |.+|+.++..|+..|. +..|.++++++........+.+.
T Consensus 13 ~~~kV~ViGa-G~vG~~~a~~l~~~g~-~~ev~L~Di~~~~~g~a~dl~~~----------------------------- 61 (303)
T 2i6t_A 13 TVNKITVVGG-GELGIACTLAISAKGI-ADRLVLLDLSEGTKGATMDLEIF----------------------------- 61 (303)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECCC-----CHHHHHHH-----------------------------
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCC-CCEEEEEcCCcchHHHHHHHhhh-----------------------------
Confidence 3578999995 9999999999999973 46899999976421111111110
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILA 206 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll~ 206 (366)
. .+++.. ..| + +.++++|+||-.+|.....+...+....|....+.+.+
T Consensus 62 --------------~---~~~i~~-t~d------------~-~~l~~aD~Vi~aag~~~pG~tR~dl~~~n~~i~~~i~~ 110 (303)
T 2i6t_A 62 --------------N---LPNVEI-SKD------------L-SASAHSKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVP 110 (303)
T ss_dssp --------------T---CTTEEE-ESC------------G-GGGTTCSEEEECCCC----CCHHHHHHHHHHHHHHHHH
T ss_pred --------------c---CCCeEE-eCC------------H-HHHCCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 0 023433 233 2 33689999999998743223445667778888888888
Q ss_pred HHHhcCCCcEEEEeeC
Q psy17528 207 LAKRMKGLKSFVHVST 222 (366)
Q Consensus 207 ~a~~~~~~~~~v~iSS 222 (366)
.+.+...-..++.+|-
T Consensus 111 ~i~~~~p~a~iiv~sN 126 (303)
T 2i6t_A 111 ALGHYSQHSVLLVASQ 126 (303)
T ss_dssp HHHHHTTTCEEEECSS
T ss_pred HHHHhCCCeEEEEcCC
Confidence 8776532223344444
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.021 Score=53.53 Aligned_cols=39 Identities=33% Similarity=0.487 Sum_probs=30.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
|++++|.|+|++|.+|+.+++.+.+. +.+.-|-+++|+.
T Consensus 5 M~mikV~V~Ga~G~MG~~i~~~l~~~-~~~eLv~~~d~~~ 43 (272)
T 4f3y_A 5 MSSMKIAIAGASGRMGRMLIEAVLAA-PDATLVGALDRTG 43 (272)
T ss_dssp -CCEEEEESSTTSHHHHHHHHHHHHC-TTEEEEEEBCCTT
T ss_pred ccccEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEEecC
Confidence 55789999999999999999999887 4555555567764
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=95.14 E-value=0.12 Score=49.82 Aligned_cols=119 Identities=10% Similarity=-0.019 Sum_probs=73.2
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
..++|.|+|+ |.+|+.++..|+..| -+..|.+++++.... +....-+.+ .. .
T Consensus 20 ~~~kV~ViGa-G~vG~~~a~~la~~g-~~~ev~L~Di~~~~~---~g~a~DL~~----~~-~------------------ 71 (330)
T 3ldh_A 20 SYNKITVVGC-DAVGMADAISVLMKD-LADEVALVDVMEDKL---KGEMMDLEH----GS-L------------------ 71 (330)
T ss_dssp CCCEEEEEST-THHHHHHHHHHHHHC-CCSEEEEECSCHHHH---HHHHHHHHH----HG-G------------------
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCC-CCCeEEEEECCHHHH---HHHHHHhhh----hh-h------------------
Confidence 3579999998 999999999999986 346899999864211 111110110 00 0
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh-hhHHHHHHHHHHHHHHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD-EHIRTAYNINVKGTQTIL 205 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~-~~~~~~~~~nv~~~~~ll 205 (366)
.. ...++ ....|.. . ++++|+||-+||....+ +...++...|+...+.+.
T Consensus 72 --------------~~-~~~~i-~~t~d~~------------~-~~daDiVIitaG~p~kpG~tR~dll~~N~~I~k~i~ 122 (330)
T 3ldh_A 72 --------------FL-HTAKI-VSGKDYS------------V-SAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFII 122 (330)
T ss_dssp --------------GS-CCSEE-EEESSSC------------S-CSSCSEEEECCSCCCCSSCCTTGGGHHHHHHHHHHH
T ss_pred --------------cc-cCCeE-EEcCCHH------------H-hCCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHH
Confidence 00 01122 1223432 2 57899999999976432 334567788999999998
Q ss_pred HHHHhcCCCcEEEEeeC
Q psy17528 206 ALAKRMKGLKSFVHVST 222 (366)
Q Consensus 206 ~~a~~~~~~~~~v~iSS 222 (366)
+.+.+...-..++.+|.
T Consensus 123 ~~I~k~~P~a~ilvvtN 139 (330)
T 3ldh_A 123 PNIVKHSPDCLKELHPE 139 (330)
T ss_dssp HHHHHHCTTCEEEECSS
T ss_pred HHHHhhCCCceEEeCCC
Confidence 88887633334555554
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.13 Score=49.41 Aligned_cols=36 Identities=28% Similarity=0.382 Sum_probs=28.0
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEE
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLI 82 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~ 82 (366)
++++|.|.||||++|+.+++.|++++.....|+++.
T Consensus 2 ~~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~ 37 (336)
T 2r00_A 2 QQFNVAIFGATGAVGETMLEVLQEREFPVDELFLLA 37 (336)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEE
Confidence 357899999999999999999988742334565555
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.02 Score=54.54 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=32.7
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.++++|||+||+|.+|..+++.+...| .+|++++|++
T Consensus 154 ~~g~~vlI~Ga~g~iG~~~~~~a~~~G---~~V~~~~~~~ 190 (345)
T 2j3h_A 154 KEGETVYVSAASGAVGQLVGQLAKMMG---CYVVGSAGSK 190 (345)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEESSH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCH
Confidence 457899999999999999999998888 6899998864
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.00 E-value=0.017 Score=55.53 Aligned_cols=37 Identities=19% Similarity=0.189 Sum_probs=32.9
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.++++|+|+||+|.+|..+++.+...| .+|++++|++
T Consensus 169 ~~g~~vlV~GasggiG~~~~~~a~~~G---a~Vi~~~~~~ 205 (351)
T 1yb5_A 169 KAGESVLVHGASGGVGLAACQIARAYG---LKILGTAGTE 205 (351)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTT---CEEEEEESSH
T ss_pred CCcCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCh
Confidence 457899999999999999999999888 6899999874
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.00 E-value=0.099 Score=49.36 Aligned_cols=105 Identities=14% Similarity=0.175 Sum_probs=60.1
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
++|.|+|| |.+|..++..|...|. +..|.++++++. ++..... .+.. .
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~g~-~~eV~L~D~~~~------~~~~~~~-----~l~~---------------~---- 48 (304)
T 2v6b_A 1 MKVGVVGT-GFVGSTAAFALVLRGS-CSELVLVDRDED------RAQAEAE-----DIAH---------------A---- 48 (304)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-CSEEEEECSSHH------HHHHHHH-----HHTT---------------S----
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCCHH------HHHHHHH-----hhhh---------------h----
Confidence 48999997 9999999999998872 348999998742 1111000 0000 0
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh-hhhHHHHHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF-DEHIRTAYNINVKGTQTILAL 207 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~-~~~~~~~~~~nv~~~~~ll~~ 207 (366)
.+ ......+...| + +.++++|+||.+++.... .+...+....|....+.+.+.
T Consensus 49 ------------~~-~~~~~~i~~~~------------~-~a~~~aDvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~ 102 (304)
T 2v6b_A 49 ------------AP-VSHGTRVWHGG------------H-SELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQ 102 (304)
T ss_dssp ------------CC-TTSCCEEEEEC------------G-GGGTTCSEEEECC------------CHHHHHHHHHHHHHH
T ss_pred ------------hh-hcCCeEEEECC------------H-HHhCCCCEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHH
Confidence 00 01122222211 1 236789999999986432 223345667788888888888
Q ss_pred HHhc
Q psy17528 208 AKRM 211 (366)
Q Consensus 208 a~~~ 211 (366)
+.+.
T Consensus 103 i~~~ 106 (304)
T 2v6b_A 103 ITRA 106 (304)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8775
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=94.93 E-value=0.02 Score=54.27 Aligned_cols=38 Identities=18% Similarity=0.182 Sum_probs=33.2
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
..++++|||+||+|.||..+++.+...| .+|++++|++
T Consensus 147 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~G---a~Vi~~~~~~ 184 (336)
T 4b7c_A 147 PKNGETVVISGAAGAVGSVAGQIARLKG---CRVVGIAGGA 184 (336)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEESSH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCH
Confidence 3458999999999999999999998888 6899999874
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=94.93 E-value=0.089 Score=49.40 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=32.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
.++++++|+|+ |.+|..++..|.+.| +.+|++++|+.+
T Consensus 125 l~~k~vlVlGa-GG~g~aia~~L~~~G--~~~v~i~~R~~~ 162 (283)
T 3jyo_A 125 AKLDSVVQVGA-GGVGNAVAYALVTHG--VQKLQVADLDTS 162 (283)
T ss_dssp CCCSEEEEECC-SHHHHHHHHHHHHTT--CSEEEEECSSHH
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCC--CCEEEEEECCHH
Confidence 56899999997 889999999999986 358999999743
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=94.89 E-value=0.046 Score=53.35 Aligned_cols=35 Identities=31% Similarity=0.423 Sum_probs=27.4
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIR 83 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R 83 (366)
.+|.|.||||++|..|++.|.++++....+..+..
T Consensus 3 ~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as 37 (366)
T 3pwk_A 3 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLAS 37 (366)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEEC
T ss_pred cEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEc
Confidence 58999999999999999988876544455555543
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.031 Score=53.47 Aligned_cols=37 Identities=19% Similarity=0.184 Sum_probs=32.5
Q ss_pred CCC--CeEEEeCCcchHHHHHHHHHHHhCCCcc-EEEEEEcCC
Q psy17528 46 YKD--QTIFITGATGFLGSLLVEKLLRCCPQIR-KIILLIRTR 85 (366)
Q Consensus 46 ~~~--~~ilItGatG~IG~~lv~~Ll~~g~~~~-~V~~~~R~~ 85 (366)
.++ ++|+|+||+|.||..+++.+...| . +|+++++++
T Consensus 157 ~~g~~~~vlI~GasggiG~~~~~~a~~~G---a~~Vi~~~~~~ 196 (357)
T 2zb4_A 157 TAGSNKTMVVSGAAGACGSVAGQIGHFLG---CSRVVGICGTH 196 (357)
T ss_dssp CTTSCCEEEESSTTBHHHHHHHHHHHHTT---CSEEEEEESCH
T ss_pred CCCCccEEEEECCCcHHHHHHHHHHHHCC---CCeEEEEeCCH
Confidence 357 899999999999999999999887 6 899998863
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.17 Score=47.86 Aligned_cols=117 Identities=16% Similarity=0.075 Sum_probs=69.8
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
++|.|+|+ |.+|..++..|.+.+ ....|.++++++... +.+...+.. .....
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~~-~g~~V~l~D~~~~~~---~~~~~~l~~----~~~~~------------------- 52 (310)
T 1guz_A 1 MKITVIGA-GNVGATTAFRLAEKQ-LARELVLLDVVEGIP---QGKALDMYE----SGPVG------------------- 52 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT-CCSEEEEECSSSSHH---HHHHHHHHT----THHHH-------------------
T ss_pred CEEEEECC-CHHHHHHHHHHHhCC-CCCEEEEEeCChhHH---HHHHHhHHh----hhhcc-------------------
Confidence 47999998 999999999998862 137899999985421 111110110 00000
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh-hhHHHHHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD-EHIRTAYNINVKGTQTILAL 207 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~-~~~~~~~~~nv~~~~~ll~~ 207 (366)
. ...++.. ..| +.. ++++|+||-+++..... ....++...|......+.+.
T Consensus 53 ------------~--~~~~i~~-t~d------------~~~-l~~aDvViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~ 104 (310)
T 1guz_A 53 ------------L--FDTKVTG-SND------------YAD-TANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDN 104 (310)
T ss_dssp ------------T--CCCEEEE-ESC------------GGG-GTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ------------c--CCcEEEE-CCC------------HHH-HCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 0 0111211 122 223 67899999999865432 33556778888988888888
Q ss_pred HHhcCCCcEEEEee
Q psy17528 208 AKRMKGLKSFVHVS 221 (366)
Q Consensus 208 a~~~~~~~~~v~iS 221 (366)
+.+...-..++.+|
T Consensus 105 i~~~~~~~~viv~t 118 (310)
T 1guz_A 105 IMKHSKNPIIIVVS 118 (310)
T ss_dssp HHHHCSSCEEEECC
T ss_pred HHHhCCCcEEEEEc
Confidence 77763333445553
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=94.87 E-value=0.059 Score=51.38 Aligned_cols=38 Identities=18% Similarity=0.333 Sum_probs=33.4
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
.++++|||+||+|.+|...++.+...| .+|+++++++.
T Consensus 158 ~~g~~VlV~Gasg~iG~~~~~~a~~~G---a~Vi~~~~~~~ 195 (342)
T 4eye_A 158 RAGETVLVLGAAGGIGTAAIQIAKGMG---AKVIAVVNRTA 195 (342)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEESSGG
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcC---CEEEEEeCCHH
Confidence 358899999999999999999998888 68999998754
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.077 Score=50.39 Aligned_cols=40 Identities=10% Similarity=0.239 Sum_probs=34.4
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCC
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGS 87 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~ 87 (366)
..++++|+|+||+|.+|...++.+...| .+|+++++++..
T Consensus 142 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~G---a~Vi~~~~~~~~ 181 (340)
T 3gms_A 142 LQRNDVLLVNACGSAIGHLFAQLSQILN---FRLIAVTRNNKH 181 (340)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHHT---CEEEEEESSSTT
T ss_pred cCCCCEEEEeCCccHHHHHHHHHHHHcC---CEEEEEeCCHHH
Confidence 3458899999999999999999888888 689999998654
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.032 Score=49.06 Aligned_cols=34 Identities=26% Similarity=0.325 Sum_probs=30.7
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
++|+|+||+|++|+.+++.|++.| ++|++++|+.
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g---~~V~~~~r~~ 34 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLG---HEIVVGSRRE 34 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTT---CEEEEEESSH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCC---CEEEEEeCCH
Confidence 479999999999999999999998 7899999874
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.062 Score=53.18 Aligned_cols=73 Identities=15% Similarity=0.211 Sum_probs=54.6
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
.++|+|+|. |-+|+.+++.|.+.| ..|+++++++. ++.. ++.
T Consensus 4 ~~~viIiG~-Gr~G~~va~~L~~~g---~~vvvId~d~~------~v~~---------~~~------------------- 45 (413)
T 3l9w_A 4 GMRVIIAGF-GRFGQITGRLLLSSG---VKMVVLDHDPD------HIET---------LRK------------------- 45 (413)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTT---CCEEEEECCHH------HHHH---------HHH-------------------
T ss_pred CCeEEEECC-CHHHHHHHHHHHHCC---CCEEEEECCHH------HHHH---------HHh-------------------
Confidence 457999996 999999999999998 78999998743 1111 111
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHH-HhCcCEEEEcCc
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELL-ISQTTIIFHIAA 182 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~-~~~~d~Vih~a~ 182 (366)
..+.++.||.++.+ .+..+ +.++++||-+.+
T Consensus 46 ------------------~g~~vi~GDat~~~------~L~~agi~~A~~viv~~~ 77 (413)
T 3l9w_A 46 ------------------FGMKVFYGDATRMD------LLESAGAAKAEVLINAID 77 (413)
T ss_dssp ------------------TTCCCEESCTTCHH------HHHHTTTTTCSEEEECCS
T ss_pred ------------------CCCeEEEcCCCCHH------HHHhcCCCccCEEEECCC
Confidence 24668999999976 55554 578999998765
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=94.56 E-value=0.05 Score=51.42 Aligned_cols=38 Identities=21% Similarity=0.191 Sum_probs=33.2
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
..++++|||+||+|.+|...++.+...| .+|+++++++
T Consensus 138 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~G---a~Vi~~~~~~ 175 (325)
T 3jyn_A 138 VKPGEIILFHAAAGGVGSLACQWAKALG---AKLIGTVSSP 175 (325)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHHT---CEEEEEESSH
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHCC---CEEEEEeCCH
Confidence 3458999999999999999999999888 6899999864
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=94.53 E-value=0.19 Score=48.42 Aligned_cols=36 Identities=31% Similarity=0.475 Sum_probs=27.9
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
|++|.|.||||++|..+++.|.+. +.+ .+..+.++.
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~-p~~-el~~l~s~~ 39 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRH-PHM-NITALTVSA 39 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHC-TTE-EEEEEEEET
T ss_pred ceEEEEECCCChHHHHHHHHHHhC-CCC-cEEEEEecC
Confidence 468999999999999999998886 454 555554433
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.27 Score=46.06 Aligned_cols=36 Identities=25% Similarity=0.257 Sum_probs=30.4
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+++|.|+|+ |.+|+.++..|.+.|. ...|.+++|+.
T Consensus 7 ~mkI~IiGa-G~vG~~~a~~l~~~g~-~~~V~l~d~~~ 42 (319)
T 1lld_A 7 PTKLAVIGA-GAVGSTLAFAAAQRGI-AREIVLEDIAK 42 (319)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC-CSEEEEECSSH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCCh
Confidence 468999997 9999999999999872 23899999874
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.47 E-value=0.042 Score=52.70 Aligned_cols=37 Identities=11% Similarity=0.187 Sum_probs=32.9
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.++++|+|+||+|.+|..+++.+...| .+|++++|++
T Consensus 166 ~~g~~VlV~Gg~g~iG~~~~~~a~~~G---a~Vi~~~~~~ 202 (353)
T 4dup_A 166 TEGESVLIHGGTSGIGTTAIQLARAFG---AEVYATAGST 202 (353)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEESSH
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHHHcC---CEEEEEeCCH
Confidence 357899999999999999999999888 6899999874
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.047 Score=51.97 Aligned_cols=38 Identities=5% Similarity=0.031 Sum_probs=33.2
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
..++++|||+||+|.+|..+++.+...| .+|++++|++
T Consensus 164 ~~~g~~vlV~Gasg~iG~~~~~~a~~~G---~~Vi~~~~~~ 201 (343)
T 2eih_A 164 VRPGDDVLVMAAGSGVSVAAIQIAKLFG---ARVIATAGSE 201 (343)
T ss_dssp CCTTCEEEECSTTSTTHHHHHHHHHHTT---CEEEEEESSH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCH
Confidence 3457899999999999999999998888 6899998864
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=94.43 E-value=0.055 Score=51.27 Aligned_cols=37 Identities=22% Similarity=0.199 Sum_probs=32.7
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.++++|||+||+|.+|...++.+...| .+|+++++++
T Consensus 147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~G---a~Vi~~~~~~ 183 (334)
T 3qwb_A 147 KKGDYVLLFAAAGGVGLILNQLLKMKG---AHTIAVASTD 183 (334)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTT---CEEEEEESSH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCH
Confidence 458899999999999999999998888 6899999864
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=94.35 E-value=0.06 Score=51.34 Aligned_cols=37 Identities=24% Similarity=0.253 Sum_probs=32.5
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHh-CCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRC-CPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~-g~~~~~V~~~~R~~ 85 (366)
.++++|+|+|++|.+|..+++.+... | .+|+++++++
T Consensus 169 ~~g~~vlV~Gagg~iG~~~~~~a~~~~G---a~Vi~~~~~~ 206 (347)
T 1jvb_A 169 DPTKTLLVVGAGGGLGTMAVQIAKAVSG---ATIIGVDVRE 206 (347)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTC---CEEEEEESSH
T ss_pred CCCCEEEEECCCccHHHHHHHHHHHcCC---CeEEEEcCCH
Confidence 35789999999989999999999988 8 6899998864
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=94.28 E-value=0.22 Score=47.43 Aligned_cols=36 Identities=14% Similarity=0.402 Sum_probs=30.0
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
.++|.|+|| |.+|..++..|...|. ..|.++++++.
T Consensus 4 ~~kI~VIGa-G~vG~~ia~~la~~g~--~~v~L~Di~~~ 39 (322)
T 1t2d_A 4 KAKIVLVGS-GMIGGVMATLIVQKNL--GDVVLFDIVKN 39 (322)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC--CEEEEECSSSS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--CeEEEEeCCHH
Confidence 468999998 9999999999998873 25889988754
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=94.25 E-value=0.22 Score=46.85 Aligned_cols=35 Identities=17% Similarity=0.242 Sum_probs=30.5
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
++|.|+| +|.+|+.++..|.+.|. ...|++++|+.
T Consensus 2 ~kI~VIG-aG~~G~~la~~L~~~g~-~~~V~l~d~~~ 36 (309)
T 1hyh_A 2 RKIGIIG-LGNVGAAVAHGLIAQGV-ADDYVFIDANE 36 (309)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTC-CSEEEEECSSH
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCC-CCEEEEEcCCH
Confidence 6899999 79999999999999973 46899999974
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.15 E-value=0.11 Score=50.30 Aligned_cols=35 Identities=37% Similarity=0.384 Sum_probs=28.3
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIR 83 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R 83 (366)
++.+|.|.||||++|..+++.|.+. +.+ .|..+..
T Consensus 12 ~~~~V~IvGAtG~vG~ellrlL~~h-P~~-el~~l~S 46 (351)
T 1vkn_A 12 HMIRAGIIGATGYTGLELVRLLKNH-PEA-KITYLSS 46 (351)
T ss_dssp CCEEEEEESTTSHHHHHHHHHHHHC-TTE-EEEEEEC
T ss_pred ceeEEEEECCCCHHHHHHHHHHHcC-CCc-EEEEEeC
Confidence 4678999999999999999999988 544 5555553
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=94.01 E-value=0.077 Score=51.02 Aligned_cols=35 Identities=14% Similarity=0.268 Sum_probs=31.5
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
++++|+|+|| |.+|..+++.+...| .+|+++++++
T Consensus 180 ~g~~VlV~Ga-G~vG~~~~q~a~~~G---a~Vi~~~~~~ 214 (366)
T 2cdc_A 180 NCRKVLVVGT-GPIGVLFTLLFRTYG---LEVWMANRRE 214 (366)
T ss_dssp TTCEEEEESC-HHHHHHHHHHHHHHT---CEEEEEESSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCC---CEEEEEeCCc
Confidence 3899999999 999999999998888 6899999875
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=93.98 E-value=0.11 Score=50.38 Aligned_cols=35 Identities=23% Similarity=0.197 Sum_probs=26.8
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIR 83 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R 83 (366)
.+|.|.||||++|..+++.|.++.+....+..+..
T Consensus 2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s 36 (344)
T 3tz6_A 2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFAS 36 (344)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEEC
Confidence 58999999999999999988776434445665543
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=93.95 E-value=0.62 Score=44.06 Aligned_cols=115 Identities=15% Similarity=0.065 Sum_probs=68.5
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
++|.|+|+ |.+|+.++..|.+.|. ...|.++++++.. .+.+...+.. .+. .
T Consensus 1 mkI~VIGa-G~~G~~la~~l~~~g~-~~~V~l~D~~~~~---~~~~~~~l~~----~~~-~------------------- 51 (319)
T 1a5z_A 1 MKIGIVGL-GRVGSSTAFALLMKGF-AREMVLIDVDKKR---AEGDALDLIH----GTP-F------------------- 51 (319)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSSHHH---HHHHHHHHHH----HGG-G-------------------
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-CCeEEEEeCChHH---HHHHHHHHHh----hhh-h-------------------
Confidence 47999997 9999999999999983 3489999987421 1111111110 000 0
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh-hhHHHHHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD-EHIRTAYNINVKGTQTILAL 207 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~-~~~~~~~~~nv~~~~~ll~~ 207 (366)
. ....+...| . +.++++|+||-+++....+ +...++...|+...+.+++.
T Consensus 52 ------------~----~~~~i~~~d---~----------~~~~~aDvViiav~~~~~~g~~r~dl~~~n~~i~~~i~~~ 102 (319)
T 1a5z_A 52 ------------T----RRANIYAGD---Y----------ADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARN 102 (319)
T ss_dssp ------------S----CCCEEEECC---G----------GGGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred ------------c----CCcEEEeCC---H----------HHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 0 111222112 1 2357899999999865432 23445677788888888888
Q ss_pred HHhcCCCcEEEEee
Q psy17528 208 AKRMKGLKSFVHVS 221 (366)
Q Consensus 208 a~~~~~~~~~v~iS 221 (366)
+.+...-..++.+|
T Consensus 103 i~~~~~~~~ii~~t 116 (319)
T 1a5z_A 103 VSKYAPDSIVIVVT 116 (319)
T ss_dssp HHHHCTTCEEEECS
T ss_pred HHhhCCCeEEEEeC
Confidence 77652222344443
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=93.82 E-value=0.13 Score=51.54 Aligned_cols=34 Identities=29% Similarity=0.415 Sum_probs=30.2
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.|+|+|.|+ |-+|+++++.|.+.| +.|+++++++
T Consensus 3 ~M~iiI~G~-G~vG~~la~~L~~~~---~~v~vId~d~ 36 (461)
T 4g65_A 3 AMKIIILGA-GQVGGTLAENLVGEN---NDITIVDKDG 36 (461)
T ss_dssp CEEEEEECC-SHHHHHHHHHTCSTT---EEEEEEESCH
T ss_pred cCEEEEECC-CHHHHHHHHHHHHCC---CCEEEEECCH
Confidence 468999996 999999999999988 8999999874
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=93.82 E-value=0.23 Score=48.34 Aligned_cols=37 Identities=16% Similarity=0.283 Sum_probs=27.5
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHh-CCCccEEEEEEcC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRC-CPQIRKIILLIRT 84 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~-g~~~~~V~~~~R~ 84 (366)
|++|.|.||||++|+.++++|+.. ...+..|+++...
T Consensus 1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~ 38 (367)
T 1t4b_A 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTS 38 (367)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS
T ss_pred CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeC
Confidence 368999999999999999966554 2234566666554
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=93.81 E-value=0.66 Score=44.64 Aligned_cols=41 Identities=15% Similarity=0.311 Sum_probs=33.8
Q ss_pred ccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 42 IQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 42 ~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.++.++..+|+|.|+ |.+|+++++.|...| +.++++++...
T Consensus 30 ~q~~L~~~~VlivG~-GGlG~~ia~~La~~G--vg~itlvD~d~ 70 (346)
T 1y8q_A 30 AQKRLRASRVLLVGL-KGLGAEIAKNLILAG--VKGLTMLDHEQ 70 (346)
T ss_dssp HHHHHHTCEEEEECC-SHHHHHHHHHHHHHT--CSEEEEECCCB
T ss_pred HHHHHhCCeEEEECC-CHHHHHHHHHHHHcC--CCEEEEEECCC
Confidence 355667899999995 789999999999997 67898887643
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=93.79 E-value=0.077 Score=51.40 Aligned_cols=40 Identities=28% Similarity=0.374 Sum_probs=34.9
Q ss_pred cccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 43 QEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 43 ~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
++.++.++|+|.|+ |.+|+.+++.|...| +.+++++++..
T Consensus 113 q~~L~~~~VlvvG~-GglGs~va~~La~aG--vg~i~lvD~D~ 152 (353)
T 3h5n_A 113 QDKLKNAKVVILGC-GGIGNHVSVILATSG--IGEIILIDNDQ 152 (353)
T ss_dssp HHHHHTCEEEEECC-SHHHHHHHHHHHHHT--CSEEEEEECCB
T ss_pred HHHHhCCeEEEECC-CHHHHHHHHHHHhCC--CCeEEEECCCc
Confidence 66777899999996 779999999999996 68999999864
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=93.64 E-value=0.12 Score=50.01 Aligned_cols=36 Identities=14% Similarity=0.199 Sum_probs=31.9
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.++++|+|+|+ |-+|..+++.+...| .+|++++|+.
T Consensus 165 l~~~~VlViGa-GgvG~~aa~~a~~~G---a~V~v~dr~~ 200 (361)
T 1pjc_A 165 VKPGKVVILGG-GVVGTEAAKMAVGLG---AQVQIFDINV 200 (361)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTT---CEEEEEESCH
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCC---CEEEEEeCCH
Confidence 45689999998 999999999999998 5899999974
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=93.63 E-value=0.071 Score=44.13 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=29.5
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+++|+|+|+ |.+|..+++.|.+.| .+|++.+|+.
T Consensus 21 ~~~v~iiG~-G~iG~~~a~~l~~~g---~~v~v~~r~~ 54 (144)
T 3oj0_A 21 GNKILLVGN-GMLASEIAPYFSYPQ---YKVTVAGRNI 54 (144)
T ss_dssp CCEEEEECC-SHHHHHHGGGCCTTT---CEEEEEESCH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCC---CEEEEEcCCH
Confidence 789999995 999999999998876 4588999874
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=93.50 E-value=0.35 Score=46.15 Aligned_cols=35 Identities=26% Similarity=0.261 Sum_probs=29.8
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
++|.|+|| |.+|..++..|...|. ..|.++++++.
T Consensus 15 ~kI~ViGa-G~vG~~iA~~la~~g~--~~V~L~Di~~~ 49 (328)
T 2hjr_A 15 KKISIIGA-GQIGSTIALLLGQKDL--GDVYMFDIIEG 49 (328)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC--CEEEEECSSTT
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC--CeEEEEECCHH
Confidence 68999997 9999999999998873 26999999754
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.52 Score=44.54 Aligned_cols=115 Identities=16% Similarity=0.061 Sum_probs=70.1
Q ss_pred eEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccccc
Q psy17528 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNYF 129 (366)
Q Consensus 50 ~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (366)
||.|+|| |.+|+.++..|+..+. ..|.+++++..... ....-+.+ .....
T Consensus 1 KI~IiGa-G~vG~~~a~~l~~~~l--~el~L~Di~~~~~~---g~~~dl~~----~~~~~-------------------- 50 (308)
T 2d4a_B 1 MITILGA-GKVGMATAVMLMMRGY--DDLLLIARTPGKPQ---GEALDLAH----AAAEL-------------------- 50 (308)
T ss_dssp CEEEECC-SHHHHHHHHHHHHHTC--SCEEEECSSTTHHH---HHHHHHHH----HHHHH--------------------
T ss_pred CEEEECc-CHHHHHHHHHHHhCCC--CEEEEEcCChhhHH---HHHHHHHH----hhhhc--------------------
Confidence 5899998 9999999999988863 56999999754321 11111111 00000
Q ss_pred chhhhhhccccCCCCCCcEEEEe-ccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh-hhHHHHHHHHHHHHHHHHHH
Q psy17528 130 NDAVFDRMRLECPNYADKVDIVC-GQLEADTFGLSARDEELLISQTTIIFHIAATVRFD-EHIRTAYNINVKGTQTILAL 207 (366)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~i~~~~-gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~-~~~~~~~~~nv~~~~~ll~~ 207 (366)
...+.+.. .| + +.++++|+||-.++....+ +...+....|+...+.+++.
T Consensus 51 ---------------~~~~~i~~t~d------------~-~a~~~aD~Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~ 102 (308)
T 2d4a_B 51 ---------------GVDIRISGSNS------------Y-EDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEK 102 (308)
T ss_dssp ---------------TCCCCEEEESC------------G-GGGTTCSEEEECCSCCCCSSCCTHHHHHHHHHHHHHHHHH
T ss_pred ---------------CCCeEEEECCC------------H-HHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 01112222 22 2 3468999999999875422 23446677899999999998
Q ss_pred HHhcCCCcEEEEeeC
Q psy17528 208 AKRMKGLKSFVHVST 222 (366)
Q Consensus 208 a~~~~~~~~~v~iSS 222 (366)
+.+...-..++.+|.
T Consensus 103 i~~~~p~a~iiv~tN 117 (308)
T 2d4a_B 103 IKAYAKDAIVVITTN 117 (308)
T ss_dssp HHHHCTTCEEEECCS
T ss_pred HHHHCCCeEEEEeCC
Confidence 877533234555544
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=93.47 E-value=0.076 Score=49.79 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=31.9
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
.++++++|+|+ |.+|..++..|.+.| +.+|+++.|+..
T Consensus 115 l~~k~vlvlGa-Gg~g~aia~~L~~~G--~~~v~v~~R~~~ 152 (277)
T 3don_A 115 IEDAYILILGA-GGASKGIANELYKIV--RPTLTVANRTMS 152 (277)
T ss_dssp GGGCCEEEECC-SHHHHHHHHHHHTTC--CSCCEEECSCGG
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCC--CCEEEEEeCCHH
Confidence 45789999996 889999999999997 247888999754
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=93.32 E-value=0.4 Score=45.21 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=30.5
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
.++|.|+|+ |.+|+.++..|.+.|. ..|.++++++.
T Consensus 4 ~~kI~VIGa-G~~G~~ia~~la~~g~--~~V~l~D~~~~ 39 (317)
T 2ewd_A 4 RRKIAVIGS-GQIGGNIAYIVGKDNL--ADVVLFDIAEG 39 (317)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTC--CEEEEECSSSS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--ceEEEEeCCch
Confidence 468999997 9999999999999972 27999999753
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=93.29 E-value=0.2 Score=47.60 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=31.8
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
+++|+|+||+|.+|...++.+...| .+|+++++++.
T Consensus 165 ~~~vli~gg~g~vG~~a~qla~~~G---a~Vi~~~~~~~ 200 (349)
T 3pi7_A 165 EKAFVMTAGASQLCKLIIGLAKEEG---FRPIVTVRRDE 200 (349)
T ss_dssp CSEEEESSTTSHHHHHHHHHHHHHT---CEEEEEESCGG
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCHH
Confidence 4799999999999999999998888 68999998754
|
| >1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A | Back alignment and structure |
|---|
Probab=93.24 E-value=0.47 Score=49.55 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=33.8
Q ss_pred cccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 43 QEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 43 ~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
++.++..+|+|.|+ |.+|+.+++.|...| +.+|++++...
T Consensus 12 Q~kL~~s~VlVVGa-GGLGsevak~La~aG--VG~ItlvD~D~ 51 (640)
T 1y8q_B 12 AEAVAGGRVLVVGA-GGIGCELLKNLVLTG--FSHIDLIDLDT 51 (640)
T ss_dssp HHHHHHCEEEEECC-SHHHHHHHHHHHHHT--CCEEEEEECCB
T ss_pred HHHHhcCeEEEECc-CHHHHHHHHHHHHcC--CCeEEEecCCE
Confidence 45556789999996 889999999999997 57999998864
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=93.15 E-value=0.26 Score=49.68 Aligned_cols=37 Identities=16% Similarity=0.341 Sum_probs=29.6
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCc--cEEEEEEcCCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQI--RKIILLIRTRG 86 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~--~~V~~~~R~~~ 86 (366)
.++|+|.| +|.||+.++..|.++. .+ ..|++.+....
T Consensus 13 ~~rVlIIG-aGgVG~~va~lla~~~-dv~~~~I~vaD~~~~ 51 (480)
T 2ph5_A 13 KNRFVILG-FGCVGQALMPLIFEKF-DIKPSQVTIIAAEGT 51 (480)
T ss_dssp CSCEEEEC-CSHHHHHHHHHHHHHB-CCCGGGEEEEESSCC
T ss_pred CCCEEEEC-cCHHHHHHHHHHHhCC-CCceeEEEEeccchh
Confidence 46799999 6999999999999983 44 47888877644
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=93.08 E-value=0.089 Score=51.10 Aligned_cols=37 Identities=30% Similarity=0.495 Sum_probs=28.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRT 84 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~ 84 (366)
|+.++|.|.||+|++|+.+++.|.++ +.+ .|.++.+.
T Consensus 14 M~~~kV~IiGAtG~iG~~llr~L~~~-p~~-elvai~~~ 50 (359)
T 1xyg_A 14 EKDIRIGLLGASGYTGAEIVRLLANH-PHF-QVTLMTAD 50 (359)
T ss_dssp -CCEEEEEECCSSHHHHHHHHHHHTC-SSE-EEEEEBCS
T ss_pred ccCcEEEEECcCCHHHHHHHHHHHcC-CCc-EEEEEeCc
Confidence 45578999999999999999999987 443 55555543
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=93.00 E-value=0.19 Score=47.34 Aligned_cols=37 Identities=24% Similarity=0.222 Sum_probs=31.9
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+++++|+|+|+ |.+|..++..|.+.| +.+|++.+|+.
T Consensus 139 l~~~~vlVlGa-Gg~g~aia~~L~~~G--~~~V~v~nR~~ 175 (297)
T 2egg_A 139 LDGKRILVIGA-GGGARGIYFSLLSTA--AERIDMANRTV 175 (297)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHTTT--CSEEEEECSSH
T ss_pred CCCCEEEEECc-HHHHHHHHHHHHHCC--CCEEEEEeCCH
Confidence 46899999997 789999999999987 34899999974
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=92.79 E-value=0.25 Score=46.47 Aligned_cols=36 Identities=17% Similarity=0.262 Sum_probs=31.2
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRT 84 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~ 84 (366)
+++++++|.|+++.+|..++..|++.| .+|++..|.
T Consensus 158 l~Gk~vvVvGrs~iVG~p~A~lL~~~g---AtVtv~h~~ 193 (285)
T 3p2o_A 158 LEGKDAVIIGASNIVGRPMATMLLNAG---ATVSVCHIK 193 (285)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTT---CEEEEECTT
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CeEEEEeCC
Confidence 578999999999999999999999998 677776553
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=92.72 E-value=0.096 Score=54.24 Aligned_cols=39 Identities=26% Similarity=0.485 Sum_probs=32.9
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+.++..+|+|.|+ |.+|+.+++.|...| |.+|++++...
T Consensus 323 ~kL~~~kVLIVGa-GGLGs~va~~La~aG--VG~ItLvD~D~ 361 (598)
T 3vh1_A 323 DIIKNTKVLLLGA-GTLGCYVSRALIAWG--VRKITFVDNGT 361 (598)
T ss_dssp HHHHTCEEEEECC-SHHHHHHHHHHHTTT--CCEEEEECCSB
T ss_pred HHHhCCeEEEECC-CHHHHHHHHHHHHcC--CCEEEEECCCc
Confidence 4566799999995 889999999999996 68999997753
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=92.61 E-value=0.28 Score=47.42 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=31.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
+.+++|+|.|+ |.+|..+++.+.+.| .+|++++..+.
T Consensus 10 ~~~~~IlIlG~-G~lg~~la~aa~~lG---~~viv~d~~~~ 46 (377)
T 3orq_A 10 KFGATIGIIGG-GQLGKMMAQSAQKMG---YKVVVLDPSED 46 (377)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTT---CEEEEEESCTT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCC---CEEEEEECCCC
Confidence 45789999995 889999999999998 78888887643
|
| >3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* | Back alignment and structure |
|---|
Probab=92.55 E-value=0.27 Score=48.11 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=30.4
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
|++++|+|.|+ |.+|..+++.+.+.| .+|++++ ..
T Consensus 22 m~~~~I~ilGg-G~lg~~l~~aa~~lG---~~v~~~d-~~ 56 (403)
T 3k5i_A 22 WNSRKVGVLGG-GQLGRMLVESANRLN---IQVNVLD-AD 56 (403)
T ss_dssp CSCCEEEEECC-SHHHHHHHHHHHHHT---CEEEEEE-ST
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCC---CEEEEEE-CC
Confidence 45789999996 899999999999999 7888888 54
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=92.53 E-value=0.3 Score=45.68 Aligned_cols=35 Identities=31% Similarity=0.343 Sum_probs=30.8
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+++|.|+||+|.+|..++..|.+.| ..|++++|+.
T Consensus 21 ~~~I~iIGg~G~mG~~la~~l~~~G---~~V~~~~~~~ 55 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLRASG---YPISILDRED 55 (298)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTT---CCEEEECTTC
T ss_pred CCEEEEEcCCCHHHHHHHHHHHhCC---CeEEEEECCc
Confidence 4689999989999999999999998 6788888864
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=92.50 E-value=0.17 Score=48.78 Aligned_cols=38 Identities=26% Similarity=0.474 Sum_probs=32.8
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.+++++|+|.|+ |.+|+.+++.|...| +.+++++++..
T Consensus 31 kL~~~~VlIvGa-GGlGs~va~~La~aG--Vg~ItlvD~D~ 68 (340)
T 3rui_A 31 IIKNTKVLLLGA-GTLGCYVSRALIAWG--VRKITFVDNGT 68 (340)
T ss_dssp HHHTCEEEEECC-SHHHHHHHHHHHHTT--CCEEEEECCCB
T ss_pred HHhCCEEEEECC-CHHHHHHHHHHHHcC--CCEEEEecCCE
Confidence 456889999996 889999999999996 68999998864
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=92.48 E-value=0.64 Score=46.43 Aligned_cols=38 Identities=8% Similarity=0.085 Sum_probs=32.7
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
...++.+|.|.| +||+|.-++..|.+.| ++|++++.++
T Consensus 17 ~~~~m~~IaViG-lGYVGLp~A~~~A~~G---~~V~g~Did~ 54 (444)
T 3vtf_A 17 RGSHMASLSVLG-LGYVGVVHAVGFALLG---HRVVGYDVNP 54 (444)
T ss_dssp TTCCCCEEEEEC-CSHHHHHHHHHHHHHT---CEEEEECSCH
T ss_pred CCCCCCEEEEEc-cCHHHHHHHHHHHhCC---CcEEEEECCH
Confidence 334578999998 7999999999999998 8999999873
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=92.44 E-value=0.2 Score=47.71 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=30.1
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRT 84 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~ 84 (366)
.++.+|||+||+|.+|..+++.+...| .+|+++ ++
T Consensus 149 ~~g~~VlV~Ga~g~iG~~~~q~a~~~G---a~Vi~~-~~ 183 (343)
T 3gaz_A 149 QDGQTVLIQGGGGGVGHVAIQIALARG---ARVFAT-AR 183 (343)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEE-EC
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCC---CEEEEE-eC
Confidence 357899999999999999999998888 678887 54
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=92.42 E-value=0.67 Score=46.63 Aligned_cols=40 Identities=28% Similarity=0.242 Sum_probs=30.2
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHh--CCCccEEEEEEcCCC
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRC--CPQIRKIILLIRTRG 86 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~--g~~~~~V~~~~R~~~ 86 (366)
+.++|.|.||.+..|..++..|++. +.....|.+.++++.
T Consensus 27 ~~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e 68 (472)
T 1u8x_X 27 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKE 68 (472)
T ss_dssp CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHH
Confidence 3468999998665577788888887 433488999999753
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=92.39 E-value=0.068 Score=50.77 Aligned_cols=71 Identities=13% Similarity=0.055 Sum_probs=52.8
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
.++++|.|+ |-+|+.+++.|.+.| . |+++++++.. .+ +.
T Consensus 115 ~~~viI~G~-G~~g~~l~~~L~~~g---~-v~vid~~~~~---~~-~~-------------------------------- 153 (336)
T 1lnq_A 115 SRHVVICGW-SESTLECLRELRGSE---V-FVLAEDENVR---KK-VL-------------------------------- 153 (336)
T ss_dssp -CEEEEESC-CHHHHHHHTTGGGSC---E-EEEESCGGGH---HH-HH--------------------------------
T ss_pred cCCEEEECC-cHHHHHHHHHHHhCC---c-EEEEeCChhh---hh-HH--------------------------------
Confidence 468999996 999999999999987 6 8888776431 01 11
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHH-HhCcCEEEEcCc
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELL-ISQTTIIFHIAA 182 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~-~~~~d~Vih~a~ 182 (366)
...+.++.||.++++ .+.++ ++++|.|+-+.+
T Consensus 154 -----------------~~~~~~i~gd~~~~~------~L~~a~i~~a~~vi~~~~ 186 (336)
T 1lnq_A 154 -----------------RSGANFVHGDPTRVS------DLEKANVRGARAVIVDLE 186 (336)
T ss_dssp -----------------HTTCEEEESCTTSHH------HHHHTCSTTEEEEEECCS
T ss_pred -----------------hCCcEEEEeCCCCHH------HHHhcChhhccEEEEcCC
Confidence 036789999999876 66665 678999997654
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=92.38 E-value=0.38 Score=43.55 Aligned_cols=42 Identities=14% Similarity=0.277 Sum_probs=35.7
Q ss_pred CCcccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcC
Q psy17528 39 LSPIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRT 84 (366)
Q Consensus 39 ~~~~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~ 84 (366)
+.|+.-.+++++|||.|| |-+|...++.|++.| .+|++++..
T Consensus 22 ~~Pifl~L~gk~VLVVGg-G~va~~ka~~Ll~~G---A~VtVvap~ 63 (223)
T 3dfz_A 22 MYTVMLDLKGRSVLVVGG-GTIATRRIKGFLQEG---AAITVVAPT 63 (223)
T ss_dssp CCEEEECCTTCCEEEECC-SHHHHHHHHHHGGGC---CCEEEECSS
T ss_pred ccccEEEcCCCEEEEECC-CHHHHHHHHHHHHCC---CEEEEECCC
Confidence 556666678999999996 899999999999998 788888765
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A | Back alignment and structure |
|---|
Probab=92.10 E-value=1.3 Score=43.20 Aligned_cols=34 Identities=15% Similarity=0.366 Sum_probs=24.0
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCC-CccEEEEEE
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCP-QIRKIILLI 82 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~-~~~~V~~~~ 82 (366)
++|.|.||||++|+.++++||...+ ....+..++
T Consensus 1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~s 35 (370)
T 3pzr_A 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFS 35 (370)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEe
Confidence 4799999999999999995555422 124555543
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=92.09 E-value=0.17 Score=47.97 Aligned_cols=36 Identities=17% Similarity=0.101 Sum_probs=30.9
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.++++|||+|+ |.+|..+++.+...| .+|++++|++
T Consensus 163 ~~g~~VlV~Ga-G~vG~~~~~~a~~~G---a~Vi~~~~~~ 198 (339)
T 1rjw_A 163 KPGEWVAIYGI-GGLGHVAVQYAKAMG---LNVVAVDIGD 198 (339)
T ss_dssp CTTCEEEEECC-STTHHHHHHHHHHTT---CEEEEECSCH
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcC---CEEEEEeCCH
Confidence 45789999999 779999999998887 6899998864
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=91.96 E-value=0.18 Score=46.68 Aligned_cols=36 Identities=22% Similarity=0.152 Sum_probs=32.1
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+++++++|+|+ |.+|..++..|.+.| .+|++.+|+.
T Consensus 117 l~~k~vlViGa-Gg~g~a~a~~L~~~G---~~V~v~~R~~ 152 (271)
T 1nyt_A 117 RPGLRILLIGA-GGASRGVLLPLLSLD---CAVTITNRTV 152 (271)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTT---CEEEEECSSH
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHcC---CEEEEEECCH
Confidence 46899999998 779999999999998 7899998874
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=91.86 E-value=0.61 Score=45.00 Aligned_cols=37 Identities=30% Similarity=0.324 Sum_probs=31.6
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.+.+++|+|.|+ |.+|..+++.+.+.| .+|++++.+.
T Consensus 11 ~~~~k~IlIlG~-G~~g~~la~aa~~~G---~~vi~~d~~~ 47 (389)
T 3q2o_A 11 ILPGKTIGIIGG-GQLGRMMALAAKEMG---YKIAVLDPTK 47 (389)
T ss_dssp CCTTSEEEEECC-SHHHHHHHHHHHHTT---CEEEEEESST
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHcC---CEEEEEeCCC
Confidence 356899999985 889999999999998 7888888764
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=91.86 E-value=0.15 Score=50.32 Aligned_cols=38 Identities=13% Similarity=0.142 Sum_probs=32.0
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
..+.+++|+|.|+ |.+|..+++.+.+.| .+|++++..+
T Consensus 31 ~~~~~~~IlIlG~-G~lg~~~~~aa~~lG---~~v~v~d~~~ 68 (419)
T 4e4t_A 31 PILPGAWLGMVGG-GQLGRMFCFAAQSMG---YRVAVLDPDP 68 (419)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHHTT---CEEEEECSCT
T ss_pred cCCCCCEEEEECC-CHHHHHHHHHHHHCC---CEEEEECCCC
Confidence 3567899999995 899999999999998 6788887654
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=91.85 E-value=0.32 Score=48.21 Aligned_cols=38 Identities=24% Similarity=0.296 Sum_probs=32.2
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
...+.+|+|+||+|.+|...++.+...| .+|+++++++
T Consensus 226 ~~~g~~VlV~GasG~vG~~avqlak~~G---a~vi~~~~~~ 263 (456)
T 3krt_A 226 MKQGDNVLIWGASGGLGSYATQFALAGG---ANPICVVSSP 263 (456)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESSH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcC---CeEEEEECCH
Confidence 3457899999999999999999888888 6888888753
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=91.76 E-value=0.41 Score=45.05 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=30.4
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIR 83 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R 83 (366)
+++++++|.|++|.+|..++..|++.| .+|++..|
T Consensus 159 l~Gk~vvVIG~s~iVG~p~A~lL~~~g---AtVtv~hs 193 (285)
T 3l07_A 159 TEGAYAVVVGASNVVGKPVSQLLLNAK---ATVTTCHR 193 (285)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTT---CEEEEECT
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCC---CeEEEEeC
Confidence 578999999999999999999999998 67776644
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=91.74 E-value=0.44 Score=45.17 Aligned_cols=36 Identities=8% Similarity=0.239 Sum_probs=31.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRT 84 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~ 84 (366)
+++++++|.|++|.+|..++..|++.| ..|++..|.
T Consensus 163 l~Gk~vvVIG~s~iVG~p~A~lL~~~g---AtVtv~~~~ 198 (300)
T 4a26_A 163 MAGKRAVVLGRSNIVGAPVAALLMKEN---ATVTIVHSG 198 (300)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTT---CEEEEECTT
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC---CeEEEEeCC
Confidence 578999999999999999999999998 678777663
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=91.70 E-value=0.28 Score=45.43 Aligned_cols=36 Identities=14% Similarity=0.065 Sum_probs=31.4
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
+.++|.|.|+ |.+|+.++..|.+.| ..|++.+|++.
T Consensus 3 ~~~kV~VIGa-G~mG~~iA~~la~~G---~~V~l~d~~~~ 38 (283)
T 4e12_A 3 GITNVTVLGT-GVLGSQIAFQTAFHG---FAVTAYDINTD 38 (283)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHTT---CEEEEECSSHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCC---CeEEEEeCCHH
Confidence 3578999985 999999999999998 78999998753
|
| >3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=91.59 E-value=1.6 Score=42.48 Aligned_cols=36 Identities=14% Similarity=0.325 Sum_probs=25.2
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCC-CccEEEEEEc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCP-QIRKIILLIR 83 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~-~~~~V~~~~R 83 (366)
.++|.|.||||++|+.++++||...+ ....+..++.
T Consensus 4 ~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss 40 (377)
T 3uw3_A 4 SMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFST 40 (377)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEES
T ss_pred CCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEec
Confidence 36899999999999999995555522 1345555443
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=91.50 E-value=0.23 Score=51.56 Aligned_cols=38 Identities=26% Similarity=0.474 Sum_probs=32.9
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.++..+|+|.|+ |.+|+.+++.|...| |.+++++++..
T Consensus 323 kL~~arVLIVGa-GGLGs~vA~~La~aG--VG~ItLvD~D~ 360 (615)
T 4gsl_A 323 IIKNTKVLLLGA-GTLGCYVSRALIAWG--VRKITFVDNGT 360 (615)
T ss_dssp HHHTCEEEEECC-SHHHHHHHHHHHHTT--CCEEEEECCCB
T ss_pred HHhCCeEEEECC-CHHHHHHHHHHHHcC--CCEEEEEcCCC
Confidence 456789999996 889999999999996 68999999865
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=91.39 E-value=0.45 Score=44.75 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=30.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIR 83 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R 83 (366)
+++++++|.|++|.+|..++..|++.| .+|++..+
T Consensus 159 l~Gk~vvVvGrs~iVG~plA~lL~~~g---AtVtv~hs 193 (286)
T 4a5o_A 159 LYGMDAVVVGASNIVGRPMALELLLGG---CTVTVTHR 193 (286)
T ss_dssp CTTCEEEEECTTSTTHHHHHHHHHHTT---CEEEEECT
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCC---CeEEEEeC
Confidence 578999999999999999999999998 67776644
|
| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
|---|
Probab=91.30 E-value=0.91 Score=43.16 Aligned_cols=35 Identities=17% Similarity=0.159 Sum_probs=30.4
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
||+|+|+|| |..|..++..+.+.| .+|++++.++.
T Consensus 1 MK~I~ilGg-g~~g~~~~~~Ak~~G---~~vv~vd~~~~ 35 (363)
T 4ffl_A 1 MKTICLVGG-KLQGFEAAYLSKKAG---MKVVLVDKNPQ 35 (363)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTT---CEEEEEESCTT
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCC---CEEEEEeCCCC
Confidence 689999995 899999999999999 88888887654
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=91.29 E-value=1.5 Score=43.30 Aligned_cols=36 Identities=8% Similarity=0.145 Sum_probs=31.9
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+++++|+|.|. |-.|..+++.|.+.| ++|.+.+++.
T Consensus 7 ~~~k~v~viG~-G~sG~s~A~~l~~~G---~~V~~~D~~~ 42 (451)
T 3lk7_A 7 FENKKVLVLGL-ARSGEAAARLLAKLG---AIVTVNDGKP 42 (451)
T ss_dssp TTTCEEEEECC-TTTHHHHHHHHHHTT---CEEEEEESSC
T ss_pred cCCCEEEEEee-CHHHHHHHHHHHhCC---CEEEEEeCCc
Confidence 46899999998 778999999999999 8999999865
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=91.27 E-value=0.19 Score=44.67 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=29.4
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+++|.|+| +|.+|+.+++.|.+.| ++|++.+|+.
T Consensus 28 ~~~I~iiG-~G~~G~~la~~l~~~g---~~V~~~~r~~ 61 (215)
T 2vns_A 28 APKVGILG-SGDFARSLATRLVGSG---FKVVVGSRNP 61 (215)
T ss_dssp -CCEEEEC-CSHHHHHHHHHHHHTT---CCEEEEESSH
T ss_pred CCEEEEEc-cCHHHHHHHHHHHHCC---CEEEEEeCCH
Confidence 57899999 7999999999999998 6788888864
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=91.24 E-value=0.26 Score=48.36 Aligned_cols=37 Identities=27% Similarity=0.527 Sum_probs=32.3
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.++++|+|+|+ |-+|..+++.|...| ..+|++++|+.
T Consensus 165 l~g~~VlIiGa-G~iG~~~a~~l~~~G--~~~V~v~~r~~ 201 (404)
T 1gpj_A 165 LHDKTVLVVGA-GEMGKTVAKSLVDRG--VRAVLVANRTY 201 (404)
T ss_dssp CTTCEEEEESC-CHHHHHHHHHHHHHC--CSEEEEECSSH
T ss_pred ccCCEEEEECh-HHHHHHHHHHHHHCC--CCEEEEEeCCH
Confidence 56899999997 999999999999987 24899999874
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=91.13 E-value=0.26 Score=47.35 Aligned_cols=36 Identities=22% Similarity=0.233 Sum_probs=31.1
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
++.+|||+|+ |.+|..+++.+...| .+|+++++++.
T Consensus 187 ~g~~VlV~Ga-G~vG~~~~q~a~~~G---a~Vi~~~~~~~ 222 (366)
T 1yqd_A 187 PGKHIGIVGL-GGLGHVAVKFAKAFG---SKVTVISTSPS 222 (366)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTT---CEEEEEESCGG
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCC---CEEEEEeCCHH
Confidence 6889999996 999999999888887 68999988753
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=91.13 E-value=0.39 Score=44.96 Aligned_cols=35 Identities=20% Similarity=0.252 Sum_probs=31.2
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIR 83 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R 83 (366)
+++++++|.|+++.+|..++..|++.| .+|++..|
T Consensus 148 l~Gk~vvVvG~s~iVG~plA~lL~~~g---AtVtv~~~ 182 (276)
T 3ngx_A 148 YHENTVTIVNRSPVVGRPLSMMLLNRN---YTVSVCHS 182 (276)
T ss_dssp CCSCEEEEECCCTTTHHHHHHHHHHTT---CEEEEECT
T ss_pred cCCCEEEEEcCChHHHHHHHHHHHHCC---CeEEEEeC
Confidence 789999999999999999999999998 67777654
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=91.09 E-value=0.22 Score=46.35 Aligned_cols=39 Identities=13% Similarity=0.198 Sum_probs=33.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGS 87 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~ 87 (366)
.++++|+|+||+|.+|..+++.+...| .+|+++++++..
T Consensus 124 ~~g~~vlV~Ga~G~vG~~~~~~a~~~G---a~Vi~~~~~~~~ 162 (302)
T 1iz0_A 124 RPGEKVLVQAAAGALGTAAVQVARAMG---LRVLAAASRPEK 162 (302)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTT---CEEEEEESSGGG
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHH
Confidence 357899999999999999999888887 689999997543
|
| >3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=90.74 E-value=0.68 Score=44.36 Aligned_cols=34 Identities=26% Similarity=0.272 Sum_probs=28.8
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
|++|+|+|+ |.+|..+++.+.+.| .+|++++..+
T Consensus 1 M~~Ililg~-g~~g~~~~~a~~~~G---~~v~~~~~~~ 34 (380)
T 3ax6_A 1 MKKIGIIGG-GQLGKMMTLEAKKMG---FYVIVLDPTP 34 (380)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTT---CEEEEEESST
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCC---CEEEEEeCCC
Confidence 468999996 899999999999998 6788887754
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=90.71 E-value=0.21 Score=47.43 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=30.7
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCcc-EEEEEEcCC
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIR-KIILLIRTR 85 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~-~V~~~~R~~ 85 (366)
++.+|||+|+ |.+|..+++.+...| . +|++++|++
T Consensus 167 ~g~~VlV~Ga-G~vG~~~~q~a~~~G---a~~Vi~~~~~~ 202 (348)
T 2d8a_A 167 SGKSVLITGA-GPLGLLGIAVAKASG---AYPVIVSEPSD 202 (348)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHTT---CCSEEEECSCH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcC---CCEEEEECCCH
Confidence 6889999999 999999999888887 5 888988863
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.70 E-value=0.6 Score=44.79 Aligned_cols=36 Identities=14% Similarity=0.271 Sum_probs=30.3
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIR 83 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R 83 (366)
..++.+|+|+||+|.+|..+++.+...| .+|++.++
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~G---a~Vi~~~~ 216 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAWD---AHVTAVCS 216 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEEC
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCC---CEEEEEeC
Confidence 3457899999999999999998888887 67888774
|
| >3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.49 E-value=0.91 Score=49.92 Aligned_cols=40 Identities=15% Similarity=0.303 Sum_probs=33.8
Q ss_pred cccCCCCeEEEeCCcchHHHHHHHHHHHhCCCc-----cEEEEEEcCC
Q psy17528 43 QEFYKDQTIFITGATGFLGSLLVEKLLRCCPQI-----RKIILLIRTR 85 (366)
Q Consensus 43 ~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~-----~~V~~~~R~~ 85 (366)
++.++..+|+|.|+ |.+|+++++.|...| + .+|++++...
T Consensus 420 q~kL~~~~VlvVGa-GGlGsevlk~La~~G--v~~g~~G~i~lvD~D~ 464 (1015)
T 3cmm_A 420 QKKIANSKVFLVGS-GAIGCEMLKNWALLG--LGSGSDGYIVVTDNDS 464 (1015)
T ss_dssp HHHHHTCEEEEECC-SHHHHHHHHHHHHHT--TTCSTTCEEEEECCCB
T ss_pred HHHHhcCeEEEEec-CHHHHHHHHHHHHcC--cCcCCCCeEEEEeCCE
Confidence 56667899999996 889999999999997 4 6888888754
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=90.44 E-value=0.71 Score=46.02 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=30.0
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
++|.|.| +|++|..++..|.+.| +.|++++|++
T Consensus 3 mkI~VIG-~G~vG~~lA~~La~~G---~~V~~~D~~~ 35 (450)
T 3gg2_A 3 LDIAVVG-IGYVGLVSATCFAELG---ANVRCIDTDR 35 (450)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTT---CEEEEECSCH
T ss_pred CEEEEEC-cCHHHHHHHHHHHhcC---CEEEEEECCH
Confidence 6899998 5999999999999998 8999999974
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=90.37 E-value=2 Score=42.83 Aligned_cols=37 Identities=19% Similarity=0.147 Sum_probs=29.2
Q ss_pred CeEEEeCCcchHHHHHHHHHHH--hCCCccEEEEEEcCC
Q psy17528 49 QTIFITGATGFLGSLLVEKLLR--CCPQIRKIILLIRTR 85 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~--~g~~~~~V~~~~R~~ 85 (366)
+||.|.||.+..|..++..|+. .+.....|.+.++.+
T Consensus 8 ~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~ 46 (450)
T 1s6y_A 8 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPE 46 (450)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGG
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCC
Confidence 5899999877669999888987 333348899999975
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=90.34 E-value=0.29 Score=45.23 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=31.2
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+++|.|+|+||.+|..+++.|.+.| ++|++.+|+.
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g---~~V~~~~r~~ 45 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSA---HHLAAIEIAP 45 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSS---SEEEEECCSH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCC---CEEEEEECCH
Confidence 3689999999999999999999998 6888888864
|
| >2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1 | Back alignment and structure |
|---|
Probab=90.19 E-value=1.8 Score=46.02 Aligned_cols=37 Identities=24% Similarity=0.308 Sum_probs=31.7
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
+..+|+|.|+ |.+|+.+++.|.+.| +.++++++...-
T Consensus 410 ~~~~vlvvG~-GglG~~~~~~L~~~G--vg~i~l~D~d~v 446 (805)
T 2nvu_B 410 DTCKVLVIGA-GGLGCELLKNLALSG--FRQIHVIDMDTI 446 (805)
T ss_dssp HTCCEEEECC-SSHHHHHHHHHHTTT--CCEEEEEECCBC
T ss_pred hCCeEEEECC-CHHHHHHHHHHHHcC--CCcEEEECCCee
Confidence 6889999996 668999999999986 679999998643
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=90.08 E-value=1.5 Score=36.37 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=28.5
Q ss_pred ccCCCCeEEEeCCc---chHHHHHHHHHHHhCCCccEEEEEEcC
Q psy17528 44 EFYKDQTIFITGAT---GFLGSLLVEKLLRCCPQIRKIILLIRT 84 (366)
Q Consensus 44 ~~~~~~~ilItGat---G~IG~~lv~~Ll~~g~~~~~V~~~~R~ 84 (366)
.+++.++|.|.|++ |-+|..+++.|++.| .+|+.++++
T Consensus 10 ~l~~p~~IavIGaS~~~g~~G~~~~~~L~~~G---~~V~~vnp~ 50 (138)
T 1y81_A 10 NSKEFRKIALVGASKNPAKYGNIILKDLLSKG---FEVLPVNPN 50 (138)
T ss_dssp ----CCEEEEETCCSCTTSHHHHHHHHHHHTT---CEEEEECTT
T ss_pred cccCCCeEEEEeecCCCCCHHHHHHHHHHHCC---CEEEEeCCC
Confidence 34567899999987 889999999999998 456665554
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=89.92 E-value=0.48 Score=45.16 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=30.1
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
..++.+|||+|+ |.+|...++-+...| ..+|+++++++
T Consensus 177 ~~~g~~VlV~Ga-G~vG~~aiqlak~~G--a~~Vi~~~~~~ 214 (363)
T 3m6i_A 177 VRLGDPVLICGA-GPIGLITMLCAKAAG--ACPLVITDIDE 214 (363)
T ss_dssp CCTTCCEEEECC-SHHHHHHHHHHHHTT--CCSEEEEESCH
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHcC--CCEEEEECCCH
Confidence 345789999998 999999998887776 24488888764
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=89.77 E-value=0.23 Score=47.89 Aligned_cols=35 Identities=23% Similarity=0.403 Sum_probs=27.7
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRT 84 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~ 84 (366)
+++|.|.||||++|+.+++.|.+. +. ..|+++.+.
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~-p~-~elv~v~s~ 38 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSH-PY-LEVKQVTSR 38 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTC-TT-EEEEEEBCS
T ss_pred CCEEEEECCCCHHHHHHHHHHHcC-CC-cEEEEEECc
Confidence 468999999999999999999877 34 355565553
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=89.64 E-value=0.31 Score=45.07 Aligned_cols=36 Identities=31% Similarity=0.325 Sum_probs=32.2
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+++++++|+|+ |.+|..++..|++.| .+|++..|+.
T Consensus 117 ~~~~~vlvlGa-Gg~g~a~a~~L~~~G---~~v~v~~R~~ 152 (272)
T 1p77_A 117 RPNQHVLILGA-GGATKGVLLPLLQAQ---QNIVLANRTF 152 (272)
T ss_dssp CTTCEEEEECC-SHHHHTTHHHHHHTT---CEEEEEESSH
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCC---CEEEEEECCH
Confidence 46789999997 789999999999998 7999999974
|
| >3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A* | Back alignment and structure |
|---|
Probab=89.48 E-value=0.37 Score=40.74 Aligned_cols=26 Identities=8% Similarity=0.125 Sum_probs=20.4
Q ss_pred chHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 58 GFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 58 G~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
|.++...++.|.+.| .+|++..|+..
T Consensus 26 ~~p~~a~a~~La~~G---a~vvi~~r~~~ 51 (157)
T 3gxh_A 26 GLPNEQQFSLLKQAG---VDVVINLMPDS 51 (157)
T ss_dssp BCCCHHHHHHHHHTT---CCEEEECSCTT
T ss_pred CCCCHHHHHHHHHcC---CCEEEECCCcc
Confidence 578899999999998 67777667543
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=89.40 E-value=2.4 Score=42.66 Aligned_cols=40 Identities=20% Similarity=0.124 Sum_probs=28.2
Q ss_pred CCCCeEEEeCCcc-hHHHHHHHHHHHh-CCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATG-FLGSLLVEKLLRC-CPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG-~IG~~lv~~Ll~~-g~~~~~V~~~~R~~ 85 (366)
|++++|.|.||.+ ..|.+++..|++. +.....|.+.++++
T Consensus 1 m~~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~ 42 (480)
T 1obb_A 1 MPSVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDE 42 (480)
T ss_dssp -CCCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCH
Confidence 3457999999755 3578788888753 11238999999975
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=89.39 E-value=0.44 Score=43.81 Aligned_cols=36 Identities=25% Similarity=0.390 Sum_probs=30.7
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.++ +++|+|+ |..|.+++..|++.| +.+|++.+|+.
T Consensus 107 ~~~-~vliiGa-Gg~a~ai~~~L~~~G--~~~I~v~nR~~ 142 (253)
T 3u62_A 107 VKE-PVVVVGA-GGAARAVIYALLQMG--VKDIWVVNRTI 142 (253)
T ss_dssp CCS-SEEEECC-SHHHHHHHHHHHHTT--CCCEEEEESCH
T ss_pred CCC-eEEEECc-HHHHHHHHHHHHHcC--CCEEEEEeCCH
Confidence 357 8999996 889999999999987 35899999974
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=89.09 E-value=0.95 Score=42.86 Aligned_cols=36 Identities=11% Similarity=0.135 Sum_probs=30.7
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIR 83 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R 83 (366)
.+++++++|.|+++.+|..++..|++.| .+|++..+
T Consensus 162 ~l~gk~vvVIG~s~iVG~p~A~lL~~~g---AtVtv~hs 197 (301)
T 1a4i_A 162 PIAGRHAVVVGRSKIVGAPMHDLLLWNN---ATVTTCHS 197 (301)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTT---CEEEEECT
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHhCC---CeEEEEEC
Confidence 3568999999998899999999999997 77777654
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=88.94 E-value=0.39 Score=45.98 Aligned_cols=37 Identities=14% Similarity=0.182 Sum_probs=32.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.++++|||+||+|.+|..+++.+...| .+|+++++++
T Consensus 162 ~~g~~VlV~Ga~G~iG~~~~q~a~~~G---a~Vi~~~~~~ 198 (362)
T 2c0c_A 162 SEGKKVLVTAAAGGTGQFAMQLSKKAK---CHVIGTCSSD 198 (362)
T ss_dssp CTTCEEEETTTTBTTHHHHHHHHHHTT---CEEEEEESSH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhCC---CEEEEEECCH
Confidence 457899999999999999999998887 6899999863
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=88.81 E-value=0.31 Score=46.17 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=30.5
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCcc-EEEEEEcCC
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIR-KIILLIRTR 85 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~-~V~~~~R~~ 85 (366)
++.+|||+|+ |.+|..+++.+...| . +|+++++++
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~q~a~~~G---a~~Vi~~~~~~ 199 (343)
T 2dq4_A 164 SGKSVLITGA-GPIGLMAAMVVRASG---AGPILVSDPNP 199 (343)
T ss_dssp TTSCEEEECC-SHHHHHHHHHHHHTT---CCSEEEECSCH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcC---CCEEEEECCCH
Confidence 6889999999 999999998888887 5 899988864
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=88.81 E-value=0.36 Score=45.49 Aligned_cols=37 Identities=22% Similarity=0.407 Sum_probs=29.8
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+.+|.|.|++|-+|+.+++.+.+. +.+.-|-+++|+.
T Consensus 21 ~irV~V~Ga~GrMGr~i~~~v~~~-~~~eLvg~vd~~~ 57 (288)
T 3ijp_A 21 SMRLTVVGANGRMGRELITAIQRR-KDVELCAVLVRKG 57 (288)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTC-SSEEEEEEBCCTT
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecCC
Confidence 468999999999999999999887 5655566667754
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=88.68 E-value=1.2 Score=42.34 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=33.1
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
.+.+++|.|.| .|-||+.+++.|...| .+|+..+|+..
T Consensus 136 ~l~g~tvGIiG-~G~IG~~vA~~l~~~G---~~V~~~dr~~~ 173 (315)
T 3pp8_A 136 TREEFSVGIMG-AGVLGAKVAESLQAWG---FPLRCWSRSRK 173 (315)
T ss_dssp CSTTCCEEEEC-CSHHHHHHHHHHHTTT---CCEEEEESSCC
T ss_pred CcCCCEEEEEe-eCHHHHHHHHHHHHCC---CEEEEEcCCch
Confidence 45689999998 6999999999999888 78999998754
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=88.57 E-value=0.19 Score=44.75 Aligned_cols=36 Identities=28% Similarity=0.297 Sum_probs=29.9
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEE-EEcCCC
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIIL-LIRTRG 86 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~-~~R~~~ 86 (366)
++++|.|+| +|.+|..++..|.+.| ..|++ .+|+..
T Consensus 22 ~mmkI~IIG-~G~mG~~la~~l~~~g---~~V~~v~~r~~~ 58 (220)
T 4huj_A 22 SMTTYAIIG-AGAIGSALAERFTAAQ---IPAIIANSRGPA 58 (220)
T ss_dssp GSCCEEEEE-CHHHHHHHHHHHHHTT---CCEEEECTTCGG
T ss_pred cCCEEEEEC-CCHHHHHHHHHHHhCC---CEEEEEECCCHH
Confidence 357899999 7999999999999998 56777 777643
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.39 E-value=0.54 Score=44.68 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=30.3
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
..++.+|||+|+ |.+|...++.+...| .+|+++++++
T Consensus 166 ~~~g~~VlV~Ga-G~vG~~a~qla~~~G---a~Vi~~~~~~ 202 (352)
T 1e3j_A 166 VQLGTTVLVIGA-GPIGLVSVLAAKAYG---AFVVCTARSP 202 (352)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTT---CEEEEEESCH
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHcC---CEEEEEcCCH
Confidence 345789999996 999999998888787 5688888764
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=88.31 E-value=0.87 Score=42.83 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=31.4
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcC
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRT 84 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~ 84 (366)
.+++++++|.|+++.+|..++..|++.| .+|++..+.
T Consensus 156 ~l~gk~vvVIG~s~iVG~p~A~lL~~~g---AtVtv~hs~ 192 (288)
T 1b0a_A 156 DTFGLNAVVIGASNIVGRPMSMELLLAG---CTTTVTHRF 192 (288)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHTTT---CEEEEECSS
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHHCC---CeEEEEeCC
Confidence 3568999999998899999999999997 778776543
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=88.27 E-value=1.1 Score=42.64 Aligned_cols=35 Identities=14% Similarity=0.177 Sum_probs=30.4
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
-.+|.|.|| |.+|+.++..++..| ..|++++.++.
T Consensus 6 ~~~VaViGa-G~MG~giA~~~a~~G---~~V~l~D~~~~ 40 (319)
T 3ado_A 6 AGDVLIVGS-GLVGRSWAMLFASGG---FRVKLYDIEPR 40 (319)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTT---CCEEEECSCHH
T ss_pred CCeEEEECC-cHHHHHHHHHHHhCC---CeEEEEECCHH
Confidence 368999996 999999999999999 88999998753
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=88.09 E-value=0.41 Score=46.46 Aligned_cols=34 Identities=35% Similarity=0.366 Sum_probs=25.8
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIR 83 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R 83 (366)
+.+|.|.||||++|..+++.|.++ +.+ .+..+..
T Consensus 7 ~~kVaIvGATGyvG~eLlrlL~~h-P~~-el~~l~S 40 (359)
T 4dpk_A 7 TLKAAILGATGLVGIEYVRMLSNH-PYI-KPAYLAG 40 (359)
T ss_dssp CEEEEETTTTSTTHHHHHHHHTTC-SSE-EEEEEEE
T ss_pred CCeEEEECCCCHHHHHHHHHHHhC-CCc-eEEEEEC
Confidence 468999999999999999977665 544 5554443
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=88.09 E-value=0.41 Score=46.46 Aligned_cols=34 Identities=35% Similarity=0.366 Sum_probs=25.8
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIR 83 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R 83 (366)
+.+|.|.||||++|..+++.|.++ +.+ .+..+..
T Consensus 7 ~~kVaIvGATGyvG~eLlrlL~~h-P~~-el~~l~S 40 (359)
T 4dpl_A 7 TLKAAILGATGLVGIEYVRMLSNH-PYI-KPAYLAG 40 (359)
T ss_dssp CEEEEETTTTSTTHHHHHHHHTTC-SSE-EEEEEEE
T ss_pred CCeEEEECCCCHHHHHHHHHHHhC-CCc-eEEEEEC
Confidence 468999999999999999977665 544 5554443
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=88.01 E-value=0.59 Score=43.49 Aligned_cols=36 Identities=14% Similarity=0.300 Sum_probs=31.4
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
.+++|.|.|+ |.+|..++..|.+.| +.|++++|++.
T Consensus 14 ~~~~I~VIG~-G~mG~~iA~~la~~G---~~V~~~d~~~~ 49 (302)
T 1f0y_A 14 IVKHVTVIGG-GLMGAGIAQVAAATG---HTVVLVDQTED 49 (302)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTT---CEEEEECSCHH
T ss_pred cCCEEEEECC-CHHHHHHHHHHHhCC---CeEEEEECCHH
Confidence 3578999996 999999999999998 78999999753
|
| >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A | Back alignment and structure |
|---|
Probab=87.95 E-value=3.7 Score=40.43 Aligned_cols=38 Identities=21% Similarity=0.181 Sum_probs=29.3
Q ss_pred CCeEEEeCCcchHHHHHHHHHHH--hCCCccEEEEEEcCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLR--CCPQIRKIILLIRTR 85 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~--~g~~~~~V~~~~R~~ 85 (366)
.+||.|.||.+..+..++..|+. .+..+..|.+++.++
T Consensus 2 ~~KI~IIGaG~v~~~~l~~~l~~~~~~l~~~el~L~Di~~ 41 (417)
T 1up7_A 2 HMRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDE 41 (417)
T ss_dssp CCEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCH
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcccCCCcCEEEEEeCCH
Confidence 46899999877777777778877 433358899999875
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=87.86 E-value=0.36 Score=48.98 Aligned_cols=36 Identities=25% Similarity=0.280 Sum_probs=28.2
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+++++++|||| |.+|.+++..|.+.| .+|+++.|+.
T Consensus 362 l~~k~vlV~Ga-GGig~aia~~L~~~G---~~V~i~~R~~ 397 (523)
T 2o7s_A 362 LASKTVVVIGA-GGAGKALAYGAKEKG---AKVVIANRTY 397 (523)
T ss_dssp ----CEEEECC-SHHHHHHHHHHHHHC---C-CEEEESSH
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCC---CEEEEEECCH
Confidence 56789999998 799999999999998 5788999974
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=87.78 E-value=0.42 Score=46.79 Aligned_cols=34 Identities=26% Similarity=0.310 Sum_probs=26.1
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEE
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILL 81 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~ 81 (366)
|++.+|.|.||||++|..+++.|.+. +. ..|..+
T Consensus 17 M~~~kVaIvGAtG~vG~ell~lL~~h-p~-~el~~l 50 (381)
T 3hsk_A 17 MSVKKAGVLGATGSVGQRFILLLSKH-PE-FEIHAL 50 (381)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTC-SS-EEEEEE
T ss_pred CCccEEEEECCCChHHHHHHHHHHcC-CC-ceEEEe
Confidence 45678999999999999999977665 43 456544
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=87.77 E-value=1.5 Score=41.91 Aligned_cols=37 Identities=24% Similarity=0.300 Sum_probs=32.9
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.+.+++|.|.| .|-||+.+++.|...| .+|+..+|+.
T Consensus 137 ~l~g~tvGIIG-lG~IG~~vA~~l~~~G---~~V~~~dr~~ 173 (324)
T 3hg7_A 137 GLKGRTLLILG-TGSIGQHIAHTGKHFG---MKVLGVSRSG 173 (324)
T ss_dssp CSTTCEEEEEC-CSHHHHHHHHHHHHTT---CEEEEECSSC
T ss_pred ccccceEEEEE-ECHHHHHHHHHHHhCC---CEEEEEcCCh
Confidence 45689999998 6999999999999988 7899999875
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=87.74 E-value=0.94 Score=43.26 Aligned_cols=36 Identities=14% Similarity=0.193 Sum_probs=30.8
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.++.+|||+| +|.+|...++.+...| .+|+++++++
T Consensus 188 ~~g~~VlV~G-~G~vG~~a~qla~~~G---a~Vi~~~~~~ 223 (363)
T 3uog_A 188 RAGDRVVVQG-TGGVALFGLQIAKATG---AEVIVTSSSR 223 (363)
T ss_dssp CTTCEEEEES-SBHHHHHHHHHHHHTT---CEEEEEESCH
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHcC---CEEEEEecCc
Confidence 3578999999 8999999998888887 6899998864
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=87.46 E-value=1 Score=42.14 Aligned_cols=37 Identities=16% Similarity=0.064 Sum_probs=30.7
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHh--CCCccEEEEEEcC
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRC--CPQIRKIILLIRT 84 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~--g~~~~~V~~~~R~ 84 (366)
.+++++++|.|++..+|.-++..|++. | .+|++..|.
T Consensus 155 ~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~---atVtv~h~~ 193 (281)
T 2c2x_A 155 SIAGAHVVVIGRGVTVGRPLGLLLTRRSEN---ATVTLCHTG 193 (281)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHTSTTTC---CEEEEECTT
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHhcCCCC---CEEEEEECc
Confidence 357899999999889999999999888 5 777776543
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=87.36 E-value=0.59 Score=43.06 Aligned_cols=34 Identities=29% Similarity=0.270 Sum_probs=29.8
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+++|.|.|+ |.+|+.++..|.+.| +.|++++|++
T Consensus 3 ~m~i~iiG~-G~~G~~~a~~l~~~g---~~V~~~~r~~ 36 (316)
T 2ew2_A 3 AMKIAIAGA-GAMGSRLGIMLHQGG---NDVTLIDQWP 36 (316)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTT---CEEEEECSCH
T ss_pred CCeEEEECc-CHHHHHHHHHHHhCC---CcEEEEECCH
Confidence 468999995 999999999999998 7899999864
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=87.32 E-value=0.86 Score=43.39 Aligned_cols=35 Identities=23% Similarity=0.189 Sum_probs=28.1
Q ss_pred CeEEEeCCcchHHHHH-HHHH-HHhCCCccEEEEEEcCCC
Q psy17528 49 QTIFITGATGFLGSLL-VEKL-LRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 49 ~~ilItGatG~IG~~l-v~~L-l~~g~~~~~V~~~~R~~~ 86 (366)
.+|||+|+ |.+|... ++-+ ...| ..+|+++++++.
T Consensus 174 ~~VlV~Ga-G~vG~~a~iqla~k~~G--a~~Vi~~~~~~~ 210 (357)
T 2b5w_A 174 SSAFVLGN-GSLGLLTLAMLKVDDKG--YENLYCLGRRDR 210 (357)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHCTTC--CCEEEEEECCCS
T ss_pred CEEEEECC-CHHHHHHHHHHHHHHcC--CcEEEEEeCCcc
Confidence 89999999 9999998 7766 5555 345999998754
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=87.27 E-value=3.1 Score=38.99 Aligned_cols=38 Identities=16% Similarity=0.160 Sum_probs=33.6
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
.+.+++|.|.| .|-||+.+++.|...| .+|+..+|+..
T Consensus 119 ~l~g~tvGIIG-lG~IG~~vA~~l~~~G---~~V~~~dr~~~ 156 (290)
T 3gvx_A 119 LLYGKALGILG-YGGIGRRVAHLAKAFG---MRVIAYTRSSV 156 (290)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHHHT---CEEEEECSSCC
T ss_pred eeecchheeec-cCchhHHHHHHHHhhC---cEEEEEecccc
Confidence 46689999998 6999999999999998 89999998754
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=87.26 E-value=0.53 Score=45.29 Aligned_cols=37 Identities=11% Similarity=0.167 Sum_probs=30.8
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
.++.+|||+|+ |.+|...++.+...| .+|+++++++.
T Consensus 193 ~~g~~VlV~Ga-G~vG~~aiqlak~~G---a~Vi~~~~~~~ 229 (369)
T 1uuf_A 193 GPGKKVGVVGI-GGLGHMGIKLAHAMG---AHVVAFTTSEA 229 (369)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTT---CEEEEEESSGG
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCC---CEEEEEeCCHH
Confidence 45789999997 889999998887777 67999998754
|
| >1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* | Back alignment and structure |
|---|
Probab=87.26 E-value=1.8 Score=42.95 Aligned_cols=37 Identities=24% Similarity=0.348 Sum_probs=31.2
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
++..+|+|.|+ |.+|+.+++.|...| +.++.+++...
T Consensus 38 L~~~~VlvvG~-GGlGs~va~~La~aG--vg~i~ivD~D~ 74 (434)
T 1tt5_B 38 LDTCKVLVIGA-GGLGCELLKNLALSG--FRQIHVIDMDT 74 (434)
T ss_dssp HHTCCEEEECS-STHHHHHHHHHHHTT--CCCEEEEECCB
T ss_pred hcCCEEEEECc-CHHHHHHHHHHHHcC--CCEEEEEcCCE
Confidence 36789999996 779999999999997 57888888754
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=87.10 E-value=0.48 Score=45.62 Aligned_cols=34 Identities=26% Similarity=0.349 Sum_probs=27.8
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcC
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRT 84 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~ 84 (366)
++|.|.||||++|..+++.|.+. +. ..|.++.++
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~~-p~-~ev~~i~~s 42 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLADH-PM-FELTALAAS 42 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTC-SS-EEEEEEEEC
T ss_pred ceEEEECcCCHHHHHHHHHHhcC-CC-CEEEEEEcc
Confidence 58999999999999999999876 33 467777653
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=87.05 E-value=1.9 Score=41.11 Aligned_cols=38 Identities=8% Similarity=0.026 Sum_probs=33.4
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.+++++++|.|++..+|..+++.|++.| .+|++.+|+.
T Consensus 174 ~l~gk~vvVIG~G~iVG~~~A~~L~~~g---AtVtv~nR~~ 211 (320)
T 1edz_A 174 RLYGKKCIVINRSEIVGRPLAALLANDG---ATVYSVDVNN 211 (320)
T ss_dssp TTTTCEEEEECCCTTTHHHHHHHHHTTS---CEEEEECSSE
T ss_pred CCCCCEEEEECCCcchHHHHHHHHHHCC---CEEEEEeCch
Confidence 4678999999988889999999999998 7899888863
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=86.95 E-value=1.3 Score=42.83 Aligned_cols=37 Identities=11% Similarity=0.118 Sum_probs=32.2
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
..+++|+|+|+ |-+|..+++.+...| .+|++.+|+..
T Consensus 170 l~g~~V~ViGa-G~iG~~aa~~a~~~G---a~V~~~d~~~~ 206 (384)
T 1l7d_A 170 VPPARVLVFGV-GVAGLQAIATAKRLG---AVVMATDVRAA 206 (384)
T ss_dssp ECCCEEEEECC-SHHHHHHHHHHHHTT---CEEEEECSCST
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCC---CEEEEEeCCHH
Confidence 46899999995 999999999999887 57999998764
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=86.94 E-value=2.3 Score=38.87 Aligned_cols=33 Identities=15% Similarity=0.242 Sum_probs=25.3
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIR 83 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R 83 (366)
++|.|.|++|-+|+.+++.+.+. +. ..|..+..
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~-~~-~elva~~d 33 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAA-DD-LTLSAELD 33 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHC-TT-CEEEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-CC-CEEEEEEc
Confidence 47999999999999999998866 23 45554443
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=86.85 E-value=2.7 Score=41.88 Aligned_cols=100 Identities=22% Similarity=0.351 Sum_probs=63.0
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
-++|+|.|| |-+|..+++.|.+. +.|.++.++... .+.+.+.
T Consensus 235 ~~~v~I~Gg-G~ig~~lA~~L~~~----~~v~iIE~d~~r---~~~la~~------------------------------ 276 (461)
T 4g65_A 235 YRRIMIVGG-GNIGASLAKRLEQT----YSVKLIERNLQR---AEKLSEE------------------------------ 276 (461)
T ss_dssp CCEEEEECC-SHHHHHHHHHHTTT----SEEEEEESCHHH---HHHHHHH------------------------------
T ss_pred ccEEEEEcc-hHHHHHHHHHhhhc----CceEEEecCHHH---HHHHHHH------------------------------
Confidence 478999995 99999999998544 677777776421 1122211
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILAL 207 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll~~ 207 (366)
.++..++.||.+|.++ -.+.-++++|+++-+.+. . +.|+.... +
T Consensus 277 -----------------l~~~~Vi~GD~td~~~-----L~ee~i~~~D~~ia~T~~------D----e~Ni~~~l----l 320 (461)
T 4g65_A 277 -----------------LENTIVFCGDAADQEL-----LTEENIDQVDVFIALTNE------D----ETNIMSAM----L 320 (461)
T ss_dssp -----------------CTTSEEEESCTTCHHH-----HHHTTGGGCSEEEECCSC------H----HHHHHHHH----H
T ss_pred -----------------CCCceEEeccccchhh-----HhhcCchhhcEEEEcccC------c----HHHHHHHH----H
Confidence 1467799999999872 222345789999976543 1 23444333 3
Q ss_pred HHhcCCCcEEEEeeC
Q psy17528 208 AKRMKGLKSFVHVST 222 (366)
Q Consensus 208 a~~~~~~~~~v~iSS 222 (366)
|++. ++++.+-.-.
T Consensus 321 Ak~~-gv~kvIa~vn 334 (461)
T 4g65_A 321 AKRM-GAKKVMVLIQ 334 (461)
T ss_dssp HHHT-TCSEEEEECS
T ss_pred HHHc-CCcccccccc
Confidence 4555 6767655433
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=86.50 E-value=1.7 Score=41.52 Aligned_cols=34 Identities=12% Similarity=0.036 Sum_probs=29.4
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEE
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLI 82 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~ 82 (366)
.++.+|+|+||+|.+|...++.+...| .+|+++.
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~G---a~Vi~~~ 196 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSG---YIPIATC 196 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEE
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCC---CEEEEEe
Confidence 468899999999999999999888887 5777775
|
| >1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* | Back alignment and structure |
|---|
Probab=86.47 E-value=1.1 Score=45.63 Aligned_cols=40 Identities=15% Similarity=0.206 Sum_probs=33.5
Q ss_pred cccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 43 QEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 43 ~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
++.++..+|+|.|+ |.+|+.+++.|...| +.++++++...
T Consensus 27 q~~L~~~~VlvvG~-GGlGseiak~La~aG--Vg~itlvD~D~ 66 (531)
T 1tt5_A 27 QEALESAHVCLINA-TATGTEILKNLVLPG--IGSFTIIDGNQ 66 (531)
T ss_dssp HHHHHHCEEEEECC-SHHHHHHHHHHHTTT--CSEEEEECCCB
T ss_pred HHHHhcCeEEEECc-CHHHHHHHHHHHHcC--CCeEEEEeCCE
Confidence 45566789999996 779999999999996 68899988764
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=86.35 E-value=0.86 Score=41.46 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=30.4
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
|+|.|.|+ |.+|+.++..|.+.| +.|++++|++.
T Consensus 1 m~i~iiG~-G~~G~~~a~~l~~~g---~~V~~~~r~~~ 34 (291)
T 1ks9_A 1 MKITVLGC-GALGQLWLTALCKQG---HEVQGWLRVPQ 34 (291)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT---CEEEEECSSCC
T ss_pred CeEEEECc-CHHHHHHHHHHHhCC---CCEEEEEcCcc
Confidence 47999996 999999999999998 78999999864
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=86.35 E-value=3.4 Score=39.26 Aligned_cols=38 Identities=26% Similarity=0.253 Sum_probs=33.4
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
.+.+++|.|.| .|-||+.+++.|...| .+|+..+|+..
T Consensus 134 ~l~gktvGIiG-lG~IG~~vA~~l~~~G---~~V~~~dr~~~ 171 (324)
T 3evt_A 134 TLTGQQLLIYG-TGQIGQSLAAKASALG---MHVIGVNTTGH 171 (324)
T ss_dssp CSTTCEEEEEC-CSHHHHHHHHHHHHTT---CEEEEEESSCC
T ss_pred cccCCeEEEEC-cCHHHHHHHHHHHhCC---CEEEEECCCcc
Confidence 45689999998 6999999999999988 79999999754
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=86.22 E-value=0.88 Score=40.13 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=30.4
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
+++|.|.| +|.+|+.++..|.+.| .+|++.+|++.
T Consensus 19 ~~~I~iiG-~G~mG~~la~~l~~~g---~~V~~~~~~~~ 53 (209)
T 2raf_A 19 GMEITIFG-KGNMGQAIGHNFEIAG---HEVTYYGSKDQ 53 (209)
T ss_dssp -CEEEEEC-CSHHHHHHHHHHHHTT---CEEEEECTTCC
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCC---CEEEEEcCCHH
Confidence 57899999 6999999999999998 78999988754
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=86.11 E-value=0.77 Score=43.30 Aligned_cols=35 Identities=14% Similarity=0.086 Sum_probs=30.0
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+.++|.|.|+ |.+|..++..|.+.| +.|++++|++
T Consensus 3 ~~mki~iiG~-G~~G~~~a~~L~~~g---~~V~~~~r~~ 37 (359)
T 1bg6_A 3 ESKTYAVLGL-GNGGHAFAAYLALKG---QSVLAWDIDA 37 (359)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHTT---CEEEEECSCH
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCC---CEEEEEeCCH
Confidence 3478999995 999999999999998 7899998864
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 366 | ||||
| d1kewa_ | 361 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 1e-10 | |
| d2b69a1 | 312 | c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 | 1e-09 | |
| d1db3a_ | 357 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric | 2e-09 | |
| d1rkxa_ | 356 | c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia | 2e-07 | |
| d2bkaa1 | 232 | c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {H | 7e-07 | |
| d1e6ua_ | 315 | c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras | 2e-06 | |
| d1sb8a_ | 341 | c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W | 2e-06 | |
| d1r6da_ | 322 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 3e-06 | |
| d1t2aa_ | 347 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H | 5e-06 | |
| d1y1pa1 | 342 | c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo | 3e-05 | |
| d2a35a1 | 212 | c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pse | 3e-05 | |
| d2q46a1 | 252 | c.2.1.2 (A:2-253) Hypothetical protein At5g02240 ( | 3e-05 | |
| d1qyca_ | 307 | c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta | 9e-05 | |
| d2c5aa1 | 363 | c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {T | 1e-04 | |
| d1udca_ | 338 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 3e-04 | |
| d1xgka_ | 350 | c.2.1.2 (A:) Negative transcriptional regulator Nm | 3e-04 | |
| d1i24a_ | 393 | c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 | 5e-04 | |
| d1oc2a_ | 346 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 5e-04 | |
| d1orra_ | 338 | c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella | 5e-04 | |
| d1n7ha_ | 339 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cr | 6e-04 | |
| d1z45a2 | 347 | c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep | 6e-04 | |
| d1qyda_ | 312 | c.2.1.2 (A:) Pinoresinol-lariciresinol reductase { | 0.001 | |
| d1hdoa_ | 205 | c.2.1.2 (A:) Biliverdin IX beta reductase {Human ( | 0.001 | |
| d2blla1 | 342 | c.2.1.2 (A:316-657) Polymyxin resistance protein A | 0.002 | |
| d1rpna_ | 321 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo | 0.002 | |
| d1ek6a_ | 346 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 0.002 | |
| d1gy8a_ | 383 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 0.003 |
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 60.2 bits (145), Expect = 1e-10
Identities = 46/280 (16%), Positives = 77/280 (27%), Gaps = 85/280 (30%)
Query: 51 IFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLEC 110
I ITG GF+GS +V +++ + ++ I + + + ++
Sbjct: 3 ILITGGAGFIGSAVVRHIIK---NTQDTVVNIDKLTYAGNLESLSDISESNRYNFE---- 55
Query: 111 PNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELL 170
DI + + F D
Sbjct: 56 -----HADICDSAEITRIFEQYQPD----------------------------------- 75
Query: 171 ISQTTIIFHIAATVRFDEHIR---TAYNINVKGTQTILALAKRM--------KGLKSFVH 219
+ H+AA D I N+ GT +L +A++ K F H
Sbjct: 76 -----AVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHH 130
Query: 220 VSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKAT 279
+ST D E E + Y+ +KA+
Sbjct: 131 ISTDEVYGDLPHPDEVENSVTLPLFT-----------------ETTAYAPSSPYSASKAS 173
Query: 280 AEDLVRQVGHE--LPICVLRPSIVFPTLQEP---MPLWIK 314
++ LVR LP V S + P +PL I
Sbjct: 174 SDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVIL 213
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.2 bits (135), Expect = 1e-09
Identities = 51/319 (15%), Positives = 86/319 (26%), Gaps = 101/319 (31%)
Query: 51 IFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLEC 110
I ITG GF+GS L +KL+ ++ V D
Sbjct: 4 ILITGGAGFVGSHLTDKLMMDGHEVT-------------------------VVDNF---F 35
Query: 111 PNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELL 170
V+ I H + N V + + +E
Sbjct: 36 TGRKRNVEHWIGHENFELINHDVVEPLYIEV----------------------------- 66
Query: 171 ISQTTIIFHIAATVRFDEHIR---TAYNINVKGTQTILALAKRMKGLKSFVHVSTA--YC 225
I+H+A+ ++ N GT +L LAKR+ + ST+ Y
Sbjct: 67 ----DQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVG--ARLLLASTSEVYG 120
Query: 226 NCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVR 285
+ + +E ++ V + Y K AE +
Sbjct: 121 DPEVHPQSEDYWGHVNPIGPRAC------------------------YDEGKRVAETMCY 156
Query: 286 QVG--HELPICVLRPSIVF-PTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342
+ + V R F P + + F L A G V + +
Sbjct: 157 AYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNF------ILQALQGEPLTVYGSGSQTR 210
Query: 343 DVVPGDRVINAMAALAWYF 361
++N + AL
Sbjct: 211 AFQYVSDLVNGLVALMNSN 229
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Score = 56.0 bits (134), Expect = 2e-09
Identities = 37/282 (13%), Positives = 66/282 (23%), Gaps = 80/282 (28%)
Query: 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLE 109
ITG TG GS L E LL ++ I R + FN D +
Sbjct: 3 VALITGVTGQDGSYLAEFLLEKGYEVHGIK-------------RRASSFNTERVDHIYQ- 48
Query: 110 CPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEEL 169
D + ++ + D L + D V
Sbjct: 49 --------DPHTCNPKFHLHYGDLSDTSNLTRILREVQPDEVY----------------- 83
Query: 170 LISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALAKR--MKGLKSFVHVSTA--YC 225
+ ++ E +++ GT +L + ++ F ST+ Y
Sbjct: 84 ------NLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYG 137
Query: 226 NCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVR 285
E + + Y + K A +
Sbjct: 138 LVQEIPQKE----------------------------TTPFYPR-SPYAVAKLYAYWITV 168
Query: 286 QVGHE--LPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALG 325
+ C + + K + +A G
Sbjct: 169 NYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQG 210
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Score = 49.8 bits (117), Expect = 2e-07
Identities = 17/60 (28%), Positives = 26/60 (43%)
Query: 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFD 104
F++ + +F+TG TGF G L L ++ L T S T RV + + D
Sbjct: 5 FWQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGD 64
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.5 bits (111), Expect = 7e-07
Identities = 17/110 (15%), Positives = 39/110 (35%), Gaps = 3/110 (2%)
Query: 37 ETLSPIQEFYK--DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRV 94
E LS ++E ++ ++++FI GA+G G +L++++L K+ L+ R + +
Sbjct: 1 EALSKLREDFRMQNKSVFILGASGETGRVLLKEILE-QGLFSKVTLIGRRKLTFDEEAYK 59
Query: 95 YNYFNDAVFDRMRLECPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNY 144
F+++ + A
Sbjct: 60 NVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVL 109
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Score = 46.8 bits (110), Expect = 2e-06
Identities = 25/257 (9%), Positives = 61/257 (23%), Gaps = 100/257 (38%)
Query: 51 IFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLEC 110
+FI G G +GS + +L + + V
Sbjct: 5 VFIAGHRGMVGSAIRRQLEQ-------------------------RGDVELVLRTR---- 35
Query: 111 PNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELL 170
D++++ + V+++F +++D V
Sbjct: 36 ----DELNLLDSRAVHDFFAS--------------ERIDQVY------------------ 59
Query: 171 ISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVST--AYCNCD 228
+ V + + N+ I+ A + + + + + Y
Sbjct: 60 ----LAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQ-NDVNKLLFLGSSCIYPKLA 114
Query: 229 RKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNS-YTLTKATAEDLVRQV 287
++ +AE N Y + K L
Sbjct: 115 KQPMAESELLQGTLE-------------------------PTNEPYAIAKIAGIKLCESY 149
Query: 288 GHE--LPICVLRPSIVF 302
+ + P+ ++
Sbjct: 150 NRQYGRDYRSVMPTNLY 166
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Score = 46.9 bits (110), Expect = 2e-06
Identities = 25/176 (14%), Positives = 56/176 (31%), Gaps = 10/176 (5%)
Query: 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRM 106
+ + ITG GF+GS L+E LL+ ++ + L G V + ++ +
Sbjct: 15 QPKVWLITGVAGFIGSNLLETLLKLDQKV--VGLDNFATGHQRNLDEVRSLVSEKQWSNF 72
Query: 107 RLECPNYADKVDIGITHRVYNYFNDAVFD---RMRLECPNYADKVDIVCGQLEADTFGLS 163
+ + + D +Y + P ++ +I G L
Sbjct: 73 KFIQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNID-GFLNMLIAARD 131
Query: 164 ARDEELLISQTTIIFHIAATVRFDE----HIRTAYNINVKGTQTILALAKRMKGLK 215
A+ + + ++ + + E + Y + + + R G
Sbjct: 132 AKVQSFTYAASSSTYGDHPGLPKVEDTIGKPLSPYAVTKYVNELYADVFSRCYGFS 187
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Score = 46.0 bits (108), Expect = 3e-06
Identities = 44/272 (16%), Positives = 70/272 (25%), Gaps = 85/272 (31%)
Query: 51 IFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLEC 110
+ +TG GF+GS V +LL + D V L
Sbjct: 3 LLVTGGAGFIGSHFVRQLLA---------------------GAYPDVPADEVIVLDSLTY 41
Query: 111 PNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELL 170
+ + + + D L +
Sbjct: 42 AGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAIVHFA----------------- 84
Query: 171 ISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVS--TAYCNCD 228
+ R NV+GTQT+L A G+ VHVS Y + D
Sbjct: 85 --------AESHVDRSIAGASVFTETNVQGTQTLLQCAVD-AGVGRVVHVSTNQVYGSID 135
Query: 229 RKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNS-YTLTKATAEDLVRQV 287
E +PNS Y +KA ++ + R
Sbjct: 136 SGSWTESSPL------------------------------EPNSPYAASKAGSDLVARAY 165
Query: 288 GHE--LPICVLRPSIVFPTLQEP---MPLWIK 314
L + + R + Q P +PL++
Sbjct: 166 HRTYGLDVRITRCCNNYGPYQHPEKLIPLFVT 197
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.4 bits (106), Expect = 5e-06
Identities = 39/281 (13%), Positives = 64/281 (22%), Gaps = 79/281 (28%)
Query: 51 IFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLEC 110
ITG TG GS L E LL ++
Sbjct: 4 ALITGITGQDGSYLAEFLLEKGYEV----------------------------------- 28
Query: 111 PNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELL 170
GI R ++ + + + + + G L T + +E
Sbjct: 29 --------HGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKP 80
Query: 171 ISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALAKR--MKGLKSFVHVSTA--YCN 226
+ + FD T +++ GT +L K + F ST+ Y
Sbjct: 81 TEIYNLGAQSHVKISFDLAEYT-ADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGK 139
Query: 227 CDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQ 286
E + + Y K A +V
Sbjct: 140 VQEIPQKE----------------------------TTPFYPR-SPYGAAKLYAYWIVVN 170
Query: 287 VGHE--LPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALG 325
L + + K V + LG
Sbjct: 171 FREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLG 211
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Score = 43.3 bits (100), Expect = 3e-05
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 47 KDQTIFITGATGFLGSLLVEKLLR 70
+ + +TGA GF+ S +VE+LL
Sbjct: 10 EGSLVLVTGANGFVASHVVEQLLE 33
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Score = 42.4 bits (98), Expect = 3e-05
Identities = 15/96 (15%), Positives = 30/96 (31%), Gaps = 1/96 (1%)
Query: 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRL 108
+ + + GATG G L++++L P + K+I R + + ++
Sbjct: 3 KRVLLAGATGLTGEHLLDRILS-EPTLAKVIAPARKALAEHPRLDNPVGPLAELLPQLDG 61
Query: 109 ECPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNY 144
+ I AV + L
Sbjct: 62 SIDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKR 97
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 42.9 bits (99), Expect = 3e-05
Identities = 14/106 (13%), Positives = 30/106 (28%), Gaps = 4/106 (3%)
Query: 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQ---RVYNYFNDAVFDRM 106
T+ +TGA+G G ++ +KL + L+R+ V+
Sbjct: 5 TVLVTGASGRTGQIVYKKLKEGSDKFV-AKGLVRSAQGKEKIGGEADVFIGDITDADSIN 63
Query: 107 RLECPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVC 152
A + ++ F+ R + +
Sbjct: 64 PAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDW 109
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Score = 41.7 bits (96), Expect = 9e-05
Identities = 29/264 (10%), Positives = 67/264 (25%), Gaps = 9/264 (3%)
Query: 51 IFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLEC 110
I + GATG++G + + L ++ ++ Q + ++
Sbjct: 6 ILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSID 65
Query: 111 PNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELL 170
+ + + V + A K + FG + +
Sbjct: 66 DHASLVEAVKNVDVVISTV--GSLQIESQVNIIKAIKEVGTVKRFFPSEFGNDVDNVHAV 123
Query: 171 ISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTAYCNCDRK 230
++ A R E Y A + ++ +
Sbjct: 124 EPAKSVFEVKAKVRRAIEAEGIPYTYVSSNC-----FAGYFLRSLAQAGLTAPPRDKVVI 178
Query: 231 FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVGHE 290
E++ A D+ L + N+ +L + +++
Sbjct: 179 LGDGNARVVFVKEEDIGTFTIKAVDDPRTLNKTLYLRLPANTLSLNEL-VALWEKKIDKT 237
Query: 291 LPICVLRPSIVFPTLQE-PMPLWI 313
L + V + + P P I
Sbjct: 238 LEKAYVPEEEVLKLIADTPFPANI 261
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 363 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 41.5 bits (96), Expect = 1e-04
Identities = 31/274 (11%), Positives = 70/274 (25%), Gaps = 82/274 (29%)
Query: 43 QEFY--KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFND 100
++++ ++ I ITGA GF+ S + +L + +I + + D
Sbjct: 8 EQYWPSENLKISITGAGGFIASHIARRLKH---EGHYVIASDWKKN--------EHMTED 56
Query: 101 AVFDRMRLECPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTF 160
D VD+ + + VD V
Sbjct: 57 MFCDEF--------HLVDLRVMENCLKVT----------------EGVDHVFNL------ 86
Query: 161 GLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHV 220
+ + N + ++ A R+ G+K F +
Sbjct: 87 ----------------AADMGGMGFIQSNHSVIMYNNTMISFNMIE-AARINGIKRFFYA 129
Query: 221 STAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATA 280
S+A + K + + + +++ L K
Sbjct: 130 SSACIYPEFKQLETTNVSLKES--------------------DAWPAEPQDAFGLEKLAT 169
Query: 281 EDLVRQVGHE--LPICVLRPSIVFPTLQEPMPLW 312
E+L + + + + R ++
Sbjct: 170 EELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGR 203
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Score = 39.9 bits (92), Expect = 3e-04
Identities = 30/194 (15%), Positives = 59/194 (30%), Gaps = 58/194 (29%)
Query: 51 IFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLEC 110
+ +TG +G++GS +LL+ + IIL S+ +
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDV--IILDNLCNSKRSVLPVIER-------------- 46
Query: 111 PNYADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELL 170
+ + + + + + + +D V
Sbjct: 47 ----------LGGKHPTFVEGDIRNEALMTEILHDHAIDTV------------------- 77
Query: 171 ISQTTIIFHIAATVRFDEHIR---TAYNINVKGTQTILALAKRMKGLKSFVHVS--TAYC 225
H A E ++ Y+ NV GT +++ A R +K+F+ S T Y
Sbjct: 78 -------IHFAGLKAVGESVQKPLEYYDNNVNGTLRLIS-AMRAANVKNFIFSSSATVYG 129
Query: 226 NCDRKFIAEKFYPP 239
+ + E F
Sbjct: 130 DQPKIPYVESFPTG 143
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Score = 40.0 bits (92), Expect = 3e-04
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 47 KDQTIFITGATGFLGSLLVEKLLR 70
+ +TI + GATG G+ L+
Sbjct: 2 QKKTIAVVGATGRQGASLIRVAAA 25
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 39.6 bits (90), Expect = 5e-04
Identities = 11/91 (12%), Positives = 23/91 (25%), Gaps = 4/91 (4%)
Query: 51 IFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLEC 110
+ + G G+ G L + ++ + L+R + R +
Sbjct: 4 VMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKA 63
Query: 111 PNYAD----KVDIGITHRVYNYFNDAVFDRM 137
DI + F D +
Sbjct: 64 LTGKSIELYVGDICDFEFLAESFKSFEPDSV 94
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 39.2 bits (90), Expect = 5e-04
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIIL 80
I +TG GF+GS V + P + +L
Sbjct: 4 NIIVTGGAGFIGSNFVHYVYNNHPDVHVTVL 34
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Score = 39.3 bits (90), Expect = 5e-04
Identities = 16/99 (16%), Positives = 30/99 (30%), Gaps = 6/99 (6%)
Query: 51 IFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRV-----YNYFNDAVFDR 105
+ ITG GFLGS L L + L R G+T + + + + + ++
Sbjct: 3 LLITGGCGFLGSNLASFALSQGIDLIVFDNLSRK-GATDNLHWLSSLGNFEFVHGDIRNK 61
Query: 106 MRLECPNYADKVDIGITHRVYNYFNDAVFDRMRLECPNY 144
+ D ++ + N
Sbjct: 62 NDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINV 100
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 39.3 bits (90), Expect = 6e-04
Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 7/88 (7%)
Query: 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLE 109
ITG TG GS L E LL ++ +I +T +Y ++ M+L
Sbjct: 3 IALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSN-FNTQRINHIYIDPHNVNKALMKL- 60
Query: 110 CPNYADKVDIGITHRVYNYFNDAVFDRM 137
D+ + + + D +
Sbjct: 61 -----HYADLTDASSLRRWIDVIKPDEV 83
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.9 bits (89), Expect = 6e-04
Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 9/76 (11%)
Query: 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRV-------YNYFNDAV 102
+ +TG G++GS V +L+ ++ + + R+ ++ +
Sbjct: 3 IVLVTGGAGYIGSHTVVELIENGYDC--VVADNLSNSTYDSVARLEVLTKHHIPFYEVDL 60
Query: 103 FDRMRLECPNYADKVD 118
DR LE K+D
Sbjct: 61 CDRKGLEKVFKEYKID 76
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Score = 38.2 bits (87), Expect = 0.001
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 47 KDQTIFITGATGFLGSLLVEKLLR 70
K + I G TG++G +V +
Sbjct: 2 KKSRVLIVGGTGYIGKRIVNASIS 25
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (85), Expect = 0.001
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 49 QTIFITGATGFLGSLLVEKLLR 70
+ I I GATG G + + ++
Sbjct: 4 KKIAIFGATGQTGLTTLAQAVQ 25
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Score = 37.6 bits (85), Expect = 0.002
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 51 IFITGATGFLGSLLVEKLLR 70
+ I G GF+G+ L E+LLR
Sbjct: 3 VLILGVNGFIGNHLTERLLR 22
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 37.7 bits (86), Expect = 0.002
Identities = 35/314 (11%), Positives = 71/314 (22%), Gaps = 84/314 (26%)
Query: 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLE 109
+ +TG TG G+ L + LL +G
Sbjct: 2 SALVTGITGQDGAYLAKLLLE--------------KG----------------------- 24
Query: 110 CPNYADKVDIGITHRVYNYFNDA-VFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEE 168
+RV+ R RL + G + AD + +
Sbjct: 25 -------------YRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDM-ADACSVQRAVIK 70
Query: 169 LLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTAYCNCD 228
+ + + T ++ G +L ++ F ST+
Sbjct: 71 AQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGL 130
Query: 229 RKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVG 288
+ + +E+ + Y + K +
Sbjct: 131 IQAERQ---------------------------DENTPFYPRSPYGVAKLYGHWITVNYR 163
Query: 289 HE--LPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVP 346
L L+ + K + V + LG + + + D
Sbjct: 164 ESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLG---KQQELRLGNVDAKRDWGF 220
Query: 347 GDRVINAMAALAWY 360
+ AM +
Sbjct: 221 AGDYVEAMWLMLQQ 234
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.4 bits (85), Expect = 0.002
Identities = 12/80 (15%), Positives = 25/80 (31%)
Query: 51 IFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLEC 110
+ +TG G++GS V +LL I + + E
Sbjct: 5 VLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEE 64
Query: 111 PNYADKVDIGITHRVYNYFN 130
+ D+ + + Y++
Sbjct: 65 MDILDQGALQRLFKKYSFMA 84
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Score = 36.7 bits (83), Expect = 0.003
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 51 IFITGATGFLGSLLVEKLLR 70
+ + G G++GS V LLR
Sbjct: 5 VLVCGGAGYIGSHFVRALLR 24
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 366 | |||
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 99.97 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 99.97 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 99.97 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 99.96 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 99.96 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 99.96 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 99.96 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 99.96 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.96 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 99.95 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 99.95 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 99.95 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 99.95 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 99.94 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.94 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 99.94 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 99.93 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 99.93 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.93 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.93 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 99.92 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 99.91 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 99.87 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 99.87 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 99.85 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 99.84 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 99.83 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 99.83 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 99.81 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 99.71 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 99.7 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 99.68 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 99.68 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 99.67 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 99.67 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 99.66 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 99.66 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 99.66 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 99.66 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 99.66 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 99.65 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.65 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 99.65 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 99.65 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 99.65 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 99.64 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 99.64 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 99.64 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 99.64 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 99.63 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 99.63 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 99.63 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.63 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 99.63 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 99.62 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 99.62 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 99.62 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 99.61 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 99.61 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 99.61 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 99.61 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 99.61 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 99.6 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 99.6 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 99.59 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 99.59 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 99.59 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 99.59 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 99.58 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 99.58 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 99.57 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 99.57 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 99.56 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 99.54 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 99.53 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 99.52 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 99.51 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 99.51 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 99.5 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 99.5 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 99.48 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 99.47 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 99.46 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 99.46 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 99.43 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 99.42 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 99.38 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 99.33 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 99.32 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 99.31 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 99.16 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 99.14 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 99.14 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 99.07 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 99.04 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 98.99 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 98.71 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 97.7 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.62 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 97.55 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 97.53 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 97.53 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 97.43 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 97.36 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.17 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 97.16 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 97.15 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 97.1 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 97.1 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 97.09 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 97.08 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 97.08 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 97.06 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 97.04 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 96.83 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 96.82 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 96.79 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 96.69 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 96.58 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 96.58 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 96.51 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.45 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 96.44 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 96.33 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 96.21 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 95.92 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 95.76 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 95.73 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 95.71 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 95.61 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 95.59 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 95.53 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 95.2 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 95.0 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 95.0 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 94.75 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 94.71 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 94.62 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 94.47 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 94.46 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 94.45 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 94.31 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 94.29 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 94.1 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 94.05 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 93.75 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 93.49 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 93.33 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 93.07 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 93.04 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 92.99 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 92.99 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 92.96 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 92.65 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 92.53 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 92.47 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 92.43 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 92.42 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 92.15 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 92.06 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 92.03 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 92.0 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 91.74 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 91.7 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 91.58 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 91.5 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 91.28 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 91.16 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 91.14 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 91.09 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 91.0 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 90.91 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 90.75 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 90.59 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 90.56 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 90.56 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 90.5 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 90.46 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 90.39 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 90.36 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 90.24 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 90.17 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 90.02 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 89.83 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 89.77 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 89.77 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 89.6 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 89.56 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 89.56 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 89.43 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 89.37 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 89.08 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 88.51 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 88.43 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 88.39 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 88.29 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 87.98 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 87.96 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 87.92 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 87.87 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 87.76 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 87.72 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 87.7 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 87.67 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 87.27 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 87.16 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 87.1 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 86.91 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 86.79 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 86.25 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 85.97 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 85.96 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 85.57 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 85.08 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 85.04 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 84.97 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 84.79 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 84.45 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 84.34 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 83.53 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 83.31 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 83.29 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 83.17 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 83.0 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 82.8 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 82.7 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 82.69 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 82.69 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 82.61 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 82.14 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 81.61 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 81.17 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 81.08 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 81.04 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 81.0 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 80.88 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 80.79 |
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=1.3e-30 Score=252.57 Aligned_cols=230 Identities=16% Similarity=0.067 Sum_probs=169.9
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
|+|||||||||||++|+++|++.| +.|++++|..+.. ..+++..++.
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g---~~V~~~~r~~~~~-~~~~~~~~~~----------------------------- 48 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKG---YEVHGIKRRASSF-NTERVDHIYQ----------------------------- 48 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEECC---------------------------------------------
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCc---CEEEEEECCCccc-chhhHHHHHh-----------------------------
Confidence 789999999999999999999998 8999999965321 1112211111
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccChh---hhHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRFD---EHIRTAYNINVKGTQT 203 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~~---~~~~~~~~~nv~~~~~ 203 (366)
+.....+++.++.+|++|.. .+.++++ ++|+|||+|+..+.. .++...+++|+.|+.+
T Consensus 49 -----------~~~~~~~~~~~~~~Dl~d~~------~~~~~~~~~~~d~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~n 111 (357)
T d1db3a_ 49 -----------DPHTCNPKFHLHYGDLSDTS------NLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLR 111 (357)
T ss_dssp -----------------CCEEECCCCSSCHH------HHHHHHHHHCCSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHH
T ss_pred -----------hhhhcCCCeEEEEeecCCHH------HHHHHHhccCCCEEEEeecccccchhhhCHHHHHHHHHHHHHH
Confidence 12223468999999999987 7888887 459999999986533 4567789999999999
Q ss_pred HHHHHHhc--CCCcEEEEeeCcceecCc--cccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHH
Q psy17528 204 ILALAKRM--KGLKSFVHVSTAYCNCDR--KFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKAT 279 (366)
Q Consensus 204 ll~~a~~~--~~~~~~v~iSS~~~~~~~--~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~ 279 (366)
++++++.. .+.++|||+||+.+|+.. .+++|+....|. +.|+.+|+.
T Consensus 112 llea~~~~~~~~~~r~i~~SS~~vYG~~~~~~~~E~~~~~P~-----------------------------~~Y~~sK~~ 162 (357)
T d1db3a_ 112 LLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPR-----------------------------SPYAVAKLY 162 (357)
T ss_dssp HHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTTSCCCCC-----------------------------SHHHHHHHH
T ss_pred HHHHHHHhCCCCCcEEEEEEchhhhCCCCCCCcCCCCCCCCC-----------------------------ChHHHHHHH
Confidence 99999875 244589999999998753 356776655543 789999999
Q ss_pred HHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcc-eeecCCCCcccCcccHHHHHHHHHH
Q psy17528 280 AEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLI-RVVQTDPNISMDVVPGDRVINAMAA 356 (366)
Q Consensus 280 ~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~l~~~~~~~~~~v~vdDva~ai~~ 356 (366)
+|.+++.++ ++++++++||++||||+..+... ...+...+.....+.. ...+++++..+||+||+|+|++++.
T Consensus 163 ~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~~~~----~~~i~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~D~~~a~~~ 238 (357)
T d1db3a_ 163 AYWITVNYRESYGMYACNGILFNHESPRRGETFV----TRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWM 238 (357)
T ss_dssp HHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSH----HHHHHHHHHHHHTTSCCCEEESCTTCEECCEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEEeccccCCCCCcCCC----chHHHHHHHHHHhCCCceEEECCCCeeecceeechHHHHHHH
Confidence 999999887 68999999999999997643211 1123444445555444 4556888999999999999999999
Q ss_pred HHHhh
Q psy17528 357 LAWYF 361 (366)
Q Consensus 357 ~~~~~ 361 (366)
+++..
T Consensus 239 ~~~~~ 243 (357)
T d1db3a_ 239 MLQQE 243 (357)
T ss_dssp TTSSS
T ss_pred HHhCC
Confidence 88764
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=99.97 E-value=6.5e-30 Score=248.28 Aligned_cols=235 Identities=18% Similarity=0.169 Sum_probs=174.8
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
|+|||||||||||++|+++|++.|+ +.|+++++...... .+++.
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~--~vv~~~d~~~~~~~-~~~~~--------------------------------- 44 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQ--DTVVNIDKLTYAGN-LESLS--------------------------------- 44 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCS--CEEEEEECCCTTCC-GGGGT---------------------------------
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC--CEEEEEeCCCcccc-HHHHH---------------------------------
Confidence 5899999999999999999999983 34555555322111 00000
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccChhh---hHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRFDE---HIRTAYNINVKGTQT 203 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~~~---~~~~~~~~nv~~~~~ 203 (366)
.....+++.++.+|+++.. .+..+++ ++|+|||+||..+... ++...+++|+.++.+
T Consensus 45 ------------~~~~~~~~~~~~~Dl~d~~------~l~~~~~~~~~d~VihlAa~~~~~~~~~~p~~~~~~N~~gt~n 106 (361)
T d1kewa_ 45 ------------DISESNRYNFEHADICDSA------EITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYA 106 (361)
T ss_dssp ------------TTTTCTTEEEEECCTTCHH------HHHHHHHHHCCSEEEECCSCCCHHHHHHCTHHHHHHHTHHHHH
T ss_pred ------------hhhhcCCcEEEEccCCCHH------HHHHHHHhCCCCEEEECccccchhhHHhCHHHHHHHHHHHHHH
Confidence 1112368999999999987 7777776 6899999999765433 446788999999999
Q ss_pred HHHHHHhcC--------CCcEEEEeeCcceecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchH
Q psy17528 204 ILALAKRMK--------GLKSFVHVSTAYCNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSY 273 (366)
Q Consensus 204 ll~~a~~~~--------~~~~~v~iSS~~~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 273 (366)
++++|.+.+ +.++|||+||+.+|+... +..|.....|...+ +......+.|
T Consensus 107 l~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~e-------------------~~~~~p~s~Y 167 (361)
T d1kewa_ 107 LLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTE-------------------TTAYAPSSPY 167 (361)
T ss_dssp HHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCT-------------------TSCCCCCSHH
T ss_pred HHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCCccccccCCCCccc-------------------CCCCCCCCHH
Confidence 999997641 346999999999998654 23333333332111 0111223789
Q ss_pred HHHHHHHHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHH
Q psy17528 274 TLTKATAEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVI 351 (366)
Q Consensus 274 ~~sK~~~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva 351 (366)
+.+|+.+|.++..+. .+++++++||++||||+..+. ..+..++.++..|.+..++++|++.++|+|++|+|
T Consensus 168 g~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~-------~~i~~~i~~~~~g~~~~v~g~g~~~r~~i~v~D~a 240 (361)
T d1kewa_ 168 SASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPE-------KLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHA 240 (361)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTT-------SHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCCCcC-------cHHHHHHHHHHcCCCcEEeCCCCeEEeCEEHHHHH
Confidence 999999999999877 789999999999999976431 12356778888999888899999999999999999
Q ss_pred HHHHHHHHhhhh
Q psy17528 352 NAMAALAWYFLF 363 (366)
Q Consensus 352 ~ai~~~~~~~~~ 363 (366)
+|+..++++...
T Consensus 241 ~ai~~~~~~~~~ 252 (361)
T d1kewa_ 241 RALHMVVTEGKA 252 (361)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHhcCCC
Confidence 999999987643
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=99.97 E-value=7.6e-29 Score=235.78 Aligned_cols=226 Identities=20% Similarity=0.151 Sum_probs=179.0
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCcc---EEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIR---KIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~---~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
|+|||||||||||++|+++|++.|+.+. +|+.+++....... ..+
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~-------------~~~------------------- 48 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNR-------------ANL------------------- 48 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCG-------------GGG-------------------
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccH-------------hHh-------------------
Confidence 5899999999999999999999986543 56666654322110 000
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh---hhHHHHHHHHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD---EHIRTAYNINVKGTQ 202 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~---~~~~~~~~~nv~~~~ 202 (366)
.......++.++.+|+.+.. ........+|.|+|+|+..... ......++.|+.++.
T Consensus 49 --------------~~~~~~~~~~~~~~d~~~~~------~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~ 108 (322)
T d1r6da_ 49 --------------APVDADPRLRFVHGDIRDAG------LLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQ 108 (322)
T ss_dssp --------------GGGTTCTTEEEEECCTTCHH------HHHHHTTTCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHH
T ss_pred --------------hhhhcCCCeEEEEeccccch------hhhccccccceEEeecccccccccccchHHHhhhhHHHHH
Confidence 01112468999999999876 5666777999999999876543 345678899999999
Q ss_pred HHHHHHHhcCCCcEEEEeeCcceecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHH
Q psy17528 203 TILALAKRMKGLKSFVHVSTAYCNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATA 280 (366)
Q Consensus 203 ~ll~~a~~~~~~~~~v~iSS~~~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~ 280 (366)
++++++.+. ++++|||+||+.+|+... +++|+....|. +.|+.+|..+
T Consensus 109 ~ll~~~~~~-~~~~~I~~Ss~~~yg~~~~~~~~E~~~~~p~-----------------------------~~Y~~sK~~~ 158 (322)
T d1r6da_ 109 TLLQCAVDA-GVGRVVHVSTNQVYGSIDSGSWTESSPLEPN-----------------------------SPYAASKAGS 158 (322)
T ss_dssp HHHHHHHHT-TCCEEEEEEEGGGGCCCSSSCBCTTSCCCCC-----------------------------SHHHHHHHHH
T ss_pred HHHHHHHHc-CCceEEEeecceeecCCCCCCCCCCCCCCCC-----------------------------CHHHHHHHHH
Confidence 999999987 789999999999987543 56666555443 7899999999
Q ss_pred HHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHH
Q psy17528 281 EDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALA 358 (366)
Q Consensus 281 E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~ 358 (366)
|.+++.+. .+++++++||++||||++.+. ..+..++.++..|....++++|++.+||+|++|+|++++.++
T Consensus 159 E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~-------~~i~~~i~~~~~~~~i~v~~~g~~~r~~i~v~D~a~ai~~~~ 231 (322)
T d1r6da_ 159 DLVARAYHRTYGLDVRITRCCNNYGPYQHPE-------KLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVL 231 (322)
T ss_dssp HHHHHHHHHHHCCCEEEEEECEEECTTCCTT-------SHHHHHHHHHHTTCCEEEETTSCCEEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEEeeeEECcCCCcC-------cHHHHHHHHHHcCCCcEEecCCCeEEccEEHHHHHHHHHHHH
Confidence 99999887 789999999999999986532 124667888889998889999999999999999999999999
Q ss_pred Hhhhh
Q psy17528 359 WYFLF 363 (366)
Q Consensus 359 ~~~~~ 363 (366)
+++..
T Consensus 232 ~~~~~ 236 (322)
T d1r6da_ 232 AGGRA 236 (322)
T ss_dssp HHCCT
T ss_pred hCCCC
Confidence 88653
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.96 E-value=5.5e-29 Score=238.33 Aligned_cols=231 Identities=19% Similarity=0.141 Sum_probs=182.8
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCc-CHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGST-SITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+.|+|||||||||||++|+++|++.| ++|++++|..... ...+++.....
T Consensus 15 ~~k~iLVTG~tGfIGs~lv~~L~~~g---~~V~~~d~~~~~~~~~~~~~~~~~~-------------------------- 65 (341)
T d1sb8a_ 15 QPKVWLITGVAGFIGSNLLETLLKLD---QKVVGLDNFATGHQRNLDEVRSLVS-------------------------- 65 (341)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCSSCCHHHHHHHHHHSC--------------------------
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCc---CEEEEEECCCCcchhhHHHHHHhhh--------------------------
Confidence 46899999999999999999999999 8999999854322 11112211111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh---hhhHHHHHHHHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF---DEHIRTAYNINVKGTQ 202 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~---~~~~~~~~~~nv~~~~ 202 (366)
......+.++.+|+.|.. .......+.+.|+|+++.... ..+....+++|+.|+.
T Consensus 66 ----------------~~~~~~~~~~~~d~~d~~------~~~~~~~~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~ 123 (341)
T d1sb8a_ 66 ----------------EKQWSNFKFIQGDIRNLD------DCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFL 123 (341)
T ss_dssp ----------------HHHHTTEEEEECCTTSHH------HHHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHH
T ss_pred ----------------hcccCCeeEEeecccccc------ccccccccccccccccccccccccccCccchhheeehhHH
Confidence 011257899999999876 666777789999999987653 3455678899999999
Q ss_pred HHHHHHHhcCCCcEEEEeeCcceecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHH
Q psy17528 203 TILALAKRMKGLKSFVHVSTAYCNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATA 280 (366)
Q Consensus 203 ~ll~~a~~~~~~~~~v~iSS~~~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~ 280 (366)
+++++|.+. ++++|||+||+.+|+..+ ++.|+..+.|. +.|+.+|+.+
T Consensus 124 ~ll~~~~~~-~~~~~i~~SS~~vyg~~~~~~~~E~~~~~p~-----------------------------~~Y~~sK~~~ 173 (341)
T d1sb8a_ 124 NMLIAARDA-KVQSFTYAASSSTYGDHPGLPKVEDTIGKPL-----------------------------SPYAVTKYVN 173 (341)
T ss_dssp HHHHHHHHT-TCSEEEEEEEGGGGTTCCCSSBCTTCCCCCC-----------------------------SHHHHHHHHH
T ss_pred HHHHHHHhc-CCceEEEcccceeeCCCCCCCccCCCCCCCC-----------------------------CcchHHHHHH
Confidence 999999987 789999999999997533 57777666554 8899999999
Q ss_pred HHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHH
Q psy17528 281 EDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALA 358 (366)
Q Consensus 281 E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~ 358 (366)
|++++.+. .+++++++||++|||++..+...+. ..+..++..++.|.+..++++|...++|+||+|+|.|+..++
T Consensus 174 E~~~~~~~~~~~i~~~ilR~~~v~G~~~~~~~~~~---~~i~~~~~~~~~g~~i~~~g~g~~~r~~i~v~D~~~a~~~~~ 250 (341)
T d1sb8a_ 174 ELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYA---AVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLAA 250 (341)
T ss_dssp HHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTC---CHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEeceeeccCcCCCCchh---hhHHHHHHHHHcCCceEEcCCCCEEEEEEEEeccchhhhhhh
Confidence 99998877 6899999999999999876543322 123567788888999889999999999999999999999888
Q ss_pred Hhh
Q psy17528 359 WYF 361 (366)
Q Consensus 359 ~~~ 361 (366)
...
T Consensus 251 ~~~ 253 (341)
T d1sb8a_ 251 TAG 253 (341)
T ss_dssp TCC
T ss_pred hcc
Confidence 654
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=8.2e-30 Score=242.43 Aligned_cols=219 Identities=19% Similarity=0.160 Sum_probs=167.5
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
|+|||||||||||++|+++|++.| ++|++++|..+.... .+.
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g---~~V~~~d~~~~~~~~--------------~~~--------------------- 43 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDG---HEVTVVDNFFTGRKR--------------NVE--------------------- 43 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCSSCCGG--------------GTG---------------------
T ss_pred CEEEEECCCcHHHHHHHHHHHHCc---CEEEEEeCCCcCCHH--------------HHH---------------------
Confidence 789999999999999999999998 889999874332110 000
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh---hhHHHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD---EHIRTAYNINVKGTQTIL 205 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~---~~~~~~~~~nv~~~~~ll 205 (366)
......++++...|+.+.. +.++|+|||+|+.++.. .++...+++|+.++.+++
T Consensus 44 ------------~~~~~~~~d~~~~~~~~~~-----------~~~~d~VihlAa~~~~~~~~~~~~~~~~~Nv~g~~~ll 100 (312)
T d2b69a1 44 ------------HWIGHENFELINHDVVEPL-----------YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNML 100 (312)
T ss_dssp ------------GGTTCTTEEEEECCTTSCC-----------CCCCSEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ------------HhcCCCceEEEehHHHHHH-----------HcCCCEEEECcccCCchhHHhCHHHHHHHHHHHHHHHH
Confidence 0011246677777766543 35799999999976543 356778899999999999
Q ss_pred HHHHhcCCCcEEEEeeCcceecCcc--ccccccCC--CCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHH
Q psy17528 206 ALAKRMKGLKSFVHVSTAYCNCDRK--FIAEKFYP--PVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAE 281 (366)
Q Consensus 206 ~~a~~~~~~~~~v~iSS~~~~~~~~--~~~e~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E 281 (366)
+++++. ++ ++||+||+.+|+... ++.|+... .|..| .+.|+.+|..+|
T Consensus 101 ~~~~~~-~~-k~I~~SS~~vy~~~~~~~~~e~~~~~~~~~~p--------------------------~~~Y~~sK~~~E 152 (312)
T d2b69a1 101 GLAKRV-GA-RLLLASTSEVYGDPEVHPQSEDYWGHVNPIGP--------------------------RACYDEGKRVAE 152 (312)
T ss_dssp HHHHHH-TC-EEEEEEEGGGGBSCSSSSBCTTCCCBCCSSST--------------------------THHHHHHHHHHH
T ss_pred HHHHHc-CC-cEEEEEChheecCCCCCCCCccccCCCCCCCC--------------------------ccHHHHHHHHHH
Confidence 999986 44 899999999997533 45554322 11111 278999999999
Q ss_pred HHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHH
Q psy17528 282 DLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAW 359 (366)
Q Consensus 282 ~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~ 359 (366)
.+++.+. ++++++++||++||||+...... ..+..++.++..|....+++++...+||+|++|++++++.+++
T Consensus 153 ~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~-----~~i~~~i~~~~~g~~i~i~~~g~~~r~~i~v~D~~~~~~~~~~ 227 (312)
T d2b69a1 153 TMCYAYMKQEGVEVRVARIFNTFGPRMHMNDG-----RVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMN 227 (312)
T ss_dssp HHHHHHHHHHCCCEEEEEECCEECTTCCTTCC-----CHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCcEEEEEeeeEECCCCCCCCc-----cHHHHHHHHHHcCCCeEEeCCCCeeEccEEHHHHHHHHHHHHh
Confidence 9998877 79999999999999998754221 1246678888899998899999999999999999999998886
Q ss_pred hh
Q psy17528 360 YF 361 (366)
Q Consensus 360 ~~ 361 (366)
..
T Consensus 228 ~~ 229 (312)
T d2b69a1 228 SN 229 (312)
T ss_dssp SS
T ss_pred hc
Confidence 54
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2.9e-28 Score=232.71 Aligned_cols=232 Identities=17% Similarity=0.040 Sum_probs=171.2
Q ss_pred CeE-EEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 49 QTI-FITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 49 ~~i-lItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
||| ||||||||||++|+++|+++| ++|++++|..+.... .++.++. ..
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g---~~V~~i~r~~~~~~~-~~~~~~~---------~~------------------ 49 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKG---YEVHGIVRRSSSFNT-GRIEHLY---------KN------------------ 49 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCCSSCCC-TTTGGGC-----------------------------
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCc---CEEEEEECCCcccch-hhHHHHh---------hc------------------
Confidence 577 999999999999999999999 899999997543210 0000000 00
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccChh---hhHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRFD---EHIRTAYNINVKGTQ 202 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~~---~~~~~~~~~nv~~~~ 202 (366)
........+.++.+|++|.. .+..++. ++++|+|+++..... .....++++|+.++.
T Consensus 50 ------------~~~~~~~~~~~~~~Dl~d~~------~~~~~~~~~~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~ 111 (347)
T d1t2aa_ 50 ------------PQAHIEGNMKLHYGDLTDST------CLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTL 111 (347)
T ss_dssp -------------------CEEEEECCTTCHH------HHHHHHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHH
T ss_pred ------------hhhhccCCcEEEEeecCCch------hhHHHHhhcccceeeeeeeccccchhhccchhhhhhHHHHHH
Confidence 01122367899999999987 6777775 678999999976543 344567899999999
Q ss_pred HHHHHHHhcC--CCcEEEEeeCcceecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHH
Q psy17528 203 TILALAKRMK--GLKSFVHVSTAYCNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKA 278 (366)
Q Consensus 203 ~ll~~a~~~~--~~~~~v~iSS~~~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~ 278 (366)
++++++.+.+ +.++|||+||+.+|+... ++.|+....|. +.|+.+|+
T Consensus 112 ~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~~~~P~-----------------------------~~Yg~sK~ 162 (347)
T d1t2aa_ 112 RLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPFYPR-----------------------------SPYGAAKL 162 (347)
T ss_dssp HHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTTSCCCCC-----------------------------SHHHHHHH
T ss_pred HHHHHHHHcCCCCCcEEEEecchheecCCCCCCCCCCCCCCCC-----------------------------CHHHHHHH
Confidence 9999998862 335899999999997533 56676655543 78999999
Q ss_pred HHHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHH
Q psy17528 279 TAEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAA 356 (366)
Q Consensus 279 ~~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~ 356 (366)
.+|++++.+. .+++++++||++||||+..+..... .....++.....+.....+++++..++|+|++|+++|+..
T Consensus 163 ~aE~~~~~~~~~~~~~~~ilr~~~vyGp~~~~~~~~~---~~~~~i~~~~~~~~~~~~~g~g~~~r~~i~v~D~~~a~~~ 239 (347)
T d1t2aa_ 163 YAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTR---KISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWL 239 (347)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHH---HHHHHHHHHHHTSCSCEEESCTTCEECCEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEEecceeCCCCCCCcccc---ccceeeehhhcCCcceeecCCCcceeeeeEecHHHHHHHH
Confidence 9999998876 7899999999999999765322110 1123334445556667778899999999999999999999
Q ss_pred HHHhh
Q psy17528 357 LAWYF 361 (366)
Q Consensus 357 ~~~~~ 361 (366)
++++.
T Consensus 240 ~~~~~ 244 (347)
T d1t2aa_ 240 MLQND 244 (347)
T ss_dssp HHHSS
T ss_pred HhhcC
Confidence 98875
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.96 E-value=7.2e-28 Score=234.80 Aligned_cols=251 Identities=11% Similarity=0.048 Sum_probs=174.4
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcC--------------CCCcCHHHHHHHHhhhhhhhhhhhcCCCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRT--------------RGSTSITQRVYNYFNDAVFDRMRLECPNY 113 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~--------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 113 (366)
||+|||||||||||++|+++|++.| +.|++++.- .......+++....
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g---~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 62 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKN---YEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWK--------------- 62 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHH---------------
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc---CEEEEEecCCcccccccccccccccccchHHHHHHHH---------------
Confidence 6899999999999999999999999 788888631 01111111111100
Q ss_pred CCccccccccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccChh----
Q psy17528 114 ADKVDIGITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRFD---- 187 (366)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~~---- 187 (366)
.....+++++.+|++|.+ .+..+++ ++|+|||+||.....
T Consensus 63 ----------------------------~~~~~~i~~~~~Dl~d~~------~l~~~~~~~~~d~ViHlAa~~~~~~s~~ 108 (393)
T d1i24a_ 63 ----------------------------ALTGKSIELYVGDICDFE------FLAESFKSFEPDSVVHFGEQRSAPYSMI 108 (393)
T ss_dssp ----------------------------HHHCCCCEEEESCTTSHH------HHHHHHHHHCCSEEEECCSCCCHHHHTS
T ss_pred ----------------------------hhcCCCcEEEEccCCCHH------HHHHHHHhhcchheeccccccccccccc
Confidence 001357899999999987 7888886 569999999975432
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCcceecCcc-ccccccCCCCCChHHHHHHhhhcchHHHHhhhhc
Q psy17528 188 --EHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTAYCNCDRK-FIAEKFYPPVFTAEELSALVAHASDEEIALLNEH 264 (366)
Q Consensus 188 --~~~~~~~~~nv~~~~~ll~~a~~~~~~~~~v~iSS~~~~~~~~-~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 264 (366)
......+..|+.|+.++++++++.+..+++++.||+.+++... +..|...+...+. ...+..
T Consensus 109 ~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~ 173 (393)
T d1i24a_ 109 DRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNG---------------RTDTLP 173 (393)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSSCBCSSEEEEEETT---------------EEEEEE
T ss_pred cccccccccccccccccHHHHHHHHhccccceeeccccccccccccccccccccccccc---------------cccccc
Confidence 2345678899999999999999885556778888876665322 2222211100000 000000
Q ss_pred ccCCCCchHHHHHHHHHHHHHHhc--CCCCEEEEecCccccCCCCCCCccc--------cc--cchHHHHHHHHhcCcce
Q psy17528 265 IIGGKPNSYTLTKATAEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWI--------KG--FNGVMALALGAGTGLIR 332 (366)
Q Consensus 265 ~~~~~~~~Y~~sK~~~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~--------~~--~~~~~~~~~~~~~g~~~ 332 (366)
.+....+.|+.+|+.+|.++..+. ++++++++||++||||+..+..... .. ...+..++.+...|.+.
T Consensus 174 ~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 253 (393)
T d1i24a_ 174 YPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTALNRFCVQAAVGHPL 253 (393)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTCCHHHHHHHHHHHTCCE
T ss_pred cccccccHHHHHhhhhcccccccccccceeeeecccccccCCCccccccccccccccccccccccchhhhhHHhhcCCee
Confidence 111223789999999999998777 7999999999999999765421100 00 01245677788899999
Q ss_pred eecCCCCcccCcccHHHHHHHHHHHHHhhhhcC
Q psy17528 333 VVQTDPNISMDVVPGDRVINAMAALAWYFLFSC 365 (366)
Q Consensus 333 ~l~~~~~~~~~~v~vdDva~ai~~~~~~~~~~~ 365 (366)
.+++++.+.+||+||+|+++|++.+++++...|
T Consensus 254 ~i~g~~~~~rd~v~v~D~~~a~~~~~~~~~~~g 286 (393)
T d1i24a_ 254 TVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAG 286 (393)
T ss_dssp EEETTSCCEEEEEEHHHHHHHHHHHHHSCCCTT
T ss_pred EEeeecccccccccccchHHHHHHHHHhhcccc
Confidence 999999999999999999999999998775543
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.96 E-value=1.3e-27 Score=230.24 Aligned_cols=229 Identities=13% Similarity=0.028 Sum_probs=173.1
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
+.|+|||||||||||++|+++|+++| +.|++++|.....
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g---~~V~~~d~~~~~~-------------------------------------- 52 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEG---HYVIASDWKKNEH-------------------------------------- 52 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSCCSS--------------------------------------
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCc---CEEEEEeCCCccc--------------------------------------
Confidence 35789999999999999999999998 8899998865421
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh----hhhHHHHHHHHHHHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF----DEHIRTAYNINVKGTQ 202 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~----~~~~~~~~~~nv~~~~ 202 (366)
.........+..+|+.+.+ .+..+++++|+|||+|+.... ..........|+.++.
T Consensus 53 --------------~~~~~~~~~~~~~D~~~~~------~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~~n~~gt~ 112 (363)
T d2c5aa1 53 --------------MTEDMFCDEFHLVDLRVME------NCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISF 112 (363)
T ss_dssp --------------SCGGGTCSEEEECCTTSHH------HHHHHHTTCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------hhhhcccCcEEEeechhHH------HHHHHhhcCCeEeecccccccccccccccccccccccchhh
Confidence 1111245578889999876 777888899999999987543 3455678889999999
Q ss_pred HHHHHHHhcCCCcEEEEeeCcceecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHH
Q psy17528 203 TILALAKRMKGLKSFVHVSTAYCNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATA 280 (366)
Q Consensus 203 ~ll~~a~~~~~~~~~v~iSS~~~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~ 280 (366)
++++++.+. ++++||++||+.+++... +..|..... ....+....+.|+.+|+.+
T Consensus 113 ~ll~~~~~~-~vk~~i~~SS~~~~~~~~~~~~~~~~~~~----------------------~e~~~~~p~~~Yg~sK~~~ 169 (363)
T d2c5aa1 113 NMIEAARIN-GIKRFFYASSACIYPEFKQLETTNVSLKE----------------------SDAWPAEPQDAFGLEKLAT 169 (363)
T ss_dssp HHHHHHHHT-TCSEEEEEEEGGGSCGGGSSSSSSCEECG----------------------GGGSSBCCSSHHHHHHHHH
T ss_pred HHHHhHHhh-Ccccccccccccccccccccccccccccc----------------------ccCCcCCCCCHHHHHHHHH
Confidence 999999987 899999999998887543 222221110 0001111227899999999
Q ss_pred HHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHH
Q psy17528 281 EDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALA 358 (366)
Q Consensus 281 E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~ 358 (366)
|++++.+. .+++++++||++|||+++....... ...................+++|.+.++|+|++|++++++.++
T Consensus 170 E~~~~~~~~~~gl~~~ilR~~~vyG~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~v~D~~~~~~~~~ 247 (363)
T d2c5aa1 170 EELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGRE--KAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLT 247 (363)
T ss_dssp HHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCC--CHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEEeeeEeccCCccccccc--ccccccccccccccccccccCCCCeEEEEeehhHHHHHHHHHH
Confidence 99998877 6899999999999999875443322 2223444455556667778889999999999999999999988
Q ss_pred Hhh
Q psy17528 359 WYF 361 (366)
Q Consensus 359 ~~~ 361 (366)
+..
T Consensus 248 ~~~ 250 (363)
T d2c5aa1 248 KSD 250 (363)
T ss_dssp HSS
T ss_pred hCC
Confidence 754
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=4.7e-27 Score=225.01 Aligned_cols=228 Identities=16% Similarity=0.137 Sum_probs=165.6
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcC-HHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTS-ITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
|+|||||||||||++|+++|++.| ++|++++|...... ....+.+ .
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g---~~V~~~d~~~~~~~~~~~~~~~---------~--------------------- 47 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNG---HDVIILDNLCNSKRSVLPVIER---------L--------------------- 47 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCSSCCTTHHHHHHH---------H---------------------
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc---CEEEEEECCCCcchhhHHHHHh---------h---------------------
Confidence 579999999999999999999998 88999988543221 1111111 0
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccChh---hhHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRFD---EHIRTAYNINVKGTQ 202 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~~---~~~~~~~~~nv~~~~ 202 (366)
...++.++++|++|.+ .+..+++ ++|+|||+||..+.. .++..++++|+.|+.
T Consensus 48 ----------------~~~~~~~~~~Dl~d~~------~l~~~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~ 105 (338)
T d1udca_ 48 ----------------GGKHPTFVEGDIRNEA------LMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTL 105 (338)
T ss_dssp ----------------HTSCCEEEECCTTCHH------HHHHHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHHHHHH
T ss_pred ----------------cCCCCEEEEeecCCHH------HHHHHHhccCCCEEEECCCccchhhHHhCHHHHHHhHHHHHH
Confidence 1257899999999987 7888876 799999999976543 355688999999999
Q ss_pred HHHHHHHhcCCCcEEEEeeCcceecCcc--ccccc-cCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHH
Q psy17528 203 TILALAKRMKGLKSFVHVSTAYCNCDRK--FIAEK-FYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKAT 279 (366)
Q Consensus 203 ~ll~~a~~~~~~~~~v~iSS~~~~~~~~--~~~e~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~ 279 (366)
++++++++. ++++||++||..+|+... +..|. ....| .+.|+.+|..
T Consensus 106 nlL~~~~~~-~v~~~i~~Ss~~vy~~~~~~~~~e~~~~~~p-----------------------------~~~Y~~sK~~ 155 (338)
T d1udca_ 106 RLISAMRAA-NVKNFIFSSSATVYGDQPKIPYVESFPTGTP-----------------------------QSPYGKSKLM 155 (338)
T ss_dssp HHHHHHHHH-TCCEEEEEEEGGGGCSCCSSSBCTTSCCCCC-----------------------------SSHHHHHHHH
T ss_pred HHHHHHHHh-CCCEEEecCcceEEccccccccccccccCCC-----------------------------cchHHHHHhh
Confidence 999999997 899999999998886433 22222 11122 2889999999
Q ss_pred HHHHHHHhc---CCCCEEEEecCccccCCCCCCCccccc--cchHHHHHH-HHhc-CcceeecC------CCCcccCccc
Q psy17528 280 AEDLVRQVG---HELPICVLRPSIVFPTLQEPMPLWIKG--FNGVMALAL-GAGT-GLIRVVQT------DPNISMDVVP 346 (366)
Q Consensus 280 ~E~~l~~~~---~gl~~~ilRp~~v~G~~~~~~~~~~~~--~~~~~~~~~-~~~~-g~~~~l~~------~~~~~~~~v~ 346 (366)
+|.++.+.. .+++++++||++|||++..+..+.... ...+...+. .+.. +.+..+++ +++..+||+|
T Consensus 156 ~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~g~~~~~~~g~~~rd~i~ 235 (338)
T d1udca_ 156 VEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235 (338)
T ss_dssp HHHHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCSSSTTSSCEECEEE
T ss_pred hhHHHHHHHhhccCCeEEEEeeccEEeccCCCCCCCCccccHHHHHHHHHHHHhcCCCCEEEeCCCcccCCCCceeeEEE
Confidence 999998655 589999999999999976543221111 112233333 3332 33444443 4788899999
Q ss_pred HHHHHHHHHHHHHhh
Q psy17528 347 GDRVINAMAALAWYF 361 (366)
Q Consensus 347 vdDva~ai~~~~~~~ 361 (366)
++|++.++..++...
T Consensus 236 v~D~~~~~~~~~~~~ 250 (338)
T d1udca_ 236 VMDLADGHVVAMEKL 250 (338)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred Eeehhhhcccccccc
Confidence 999999988877654
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.95 E-value=2e-27 Score=224.53 Aligned_cols=226 Identities=14% Similarity=0.039 Sum_probs=172.0
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
|+|||||||||||++|+++|+++| ++|++++|..+... .+++.++
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g---~~V~~~~r~~~~~~-~~~l~~~------------------------------- 45 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKG---YRVHGLVARRSSDT-RWRLREL------------------------------- 45 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCCSSCC-CHHHHHT-------------------------------
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc---CEEEEEECCCCccc-HHHHHHh-------------------------------
Confidence 689999999999999999999999 89999999765322 1222221
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccChh---hhHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRFD---EHIRTAYNINVKGTQT 203 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~~---~~~~~~~~~nv~~~~~ 203 (366)
...+++.++.+|+.|.. .+...+. ..++++|+|+..... .+..+.++.|+.++.+
T Consensus 46 --------------~~~~~~~~~~~Dl~d~~------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~g~~~ 105 (321)
T d1rpna_ 46 --------------GIEGDIQYEDGDMADAC------SVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTH 105 (321)
T ss_dssp --------------TCGGGEEEEECCTTCHH------HHHHHHHHHCCSEEEECCSCCCHHHHTTSHHHHHHHHTHHHHH
T ss_pred --------------cccCCcEEEEccccChH------HhhhhhccccccccccccccccccccccchHHHHhhhhhchHH
Confidence 12357899999999976 6666665 567899998876543 3467789999999999
Q ss_pred HHHHHHhcCCCcEEEEeeCcceecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHH
Q psy17528 204 ILALAKRMKGLKSFVHVSTAYCNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAE 281 (366)
Q Consensus 204 ll~~a~~~~~~~~~v~iSS~~~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E 281 (366)
+++++.+.+..++|++.||+.+++... ..+|+.+..|. +.|+.+|..+|
T Consensus 106 ~l~~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~E~~~~~p~-----------------------------~~Y~~sK~~~E 156 (321)
T d1rpna_ 106 LLEAIRQFSPETRFYQASTSEMFGLIQAERQDENTPFYPR-----------------------------SPYGVAKLYGH 156 (321)
T ss_dssp HHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTTSCCCCC-----------------------------SHHHHHHHHHH
T ss_pred HHHHHHHhCCCcccccccchhhcCcccCCCCCCCCCcccc-----------------------------ChhHHHHHHHH
Confidence 999999875667889999987775433 34555444443 88999999999
Q ss_pred HHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcC-cceeecCCCCcccCcccHHHHHHHHHHHH
Q psy17528 282 DLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTG-LIRVVQTDPNISMDVVPGDRVINAMAALA 358 (366)
Q Consensus 282 ~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~l~~~~~~~~~~v~vdDva~ai~~~~ 358 (366)
+++..+. ++++++++||+++|||...... . ...+..++.+...+ .....++++++.++|+|++|+|++++.++
T Consensus 157 ~~~~~~~~~~~~~~~~lr~~~vyGp~~~~~~--~--~~~i~~~~~~~~~~~~~~i~~g~g~~~r~~i~v~D~~~~~~~~~ 232 (321)
T d1rpna_ 157 WITVNYRESFGLHASSGILFNHESPLRGIEF--V--TRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLML 232 (321)
T ss_dssp HHHHHHHHHHCCCEEEEEECCEECTTSCTTS--H--HHHHHHHHHHHHTTSCSCEEESCTTCEEECEEHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCcEEEEEEecccCCCccccc--c--HHHHHHHHHHHHhCCCCcEEECCCCeEEccEEeHHHHHHHHHHH
Confidence 9999877 7899999999999999754211 1 11234445554444 44556788999999999999999999999
Q ss_pred Hhhh
Q psy17528 359 WYFL 362 (366)
Q Consensus 359 ~~~~ 362 (366)
+++.
T Consensus 233 ~~~~ 236 (321)
T d1rpna_ 233 QQDK 236 (321)
T ss_dssp HSSS
T ss_pred hcCC
Confidence 8764
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=99.95 E-value=4.4e-28 Score=232.71 Aligned_cols=239 Identities=18% Similarity=0.163 Sum_probs=172.5
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+|+|||||||||||++|+++|++.|+.+ +|+++++...... .. .+
T Consensus 2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v-~v~~~d~~~~~~~-~~------------~~--------------------- 46 (346)
T d1oc2a_ 2 FKNIIVTGGAGFIGSNFVHYVYNNHPDV-HVTVLDKLTYAGN-KA------------NL--------------------- 46 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTC-EEEEEECCCTTCC-GG------------GT---------------------
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHCCCCe-EEEEEeCCCcccc-HH------------HH---------------------
Confidence 6899999999999999999999998543 3555544221110 00 00
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh---hhHHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD---EHIRTAYNINVKGTQTI 204 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~---~~~~~~~~~nv~~~~~l 204 (366)
......++.++.+|+.|.+ .+.+++.+.+.|+|+|+..... .++.+.+++|+.++.++
T Consensus 47 -------------~~~~~~~i~~~~~Di~d~~------~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~N~~g~~nl 107 (346)
T d1oc2a_ 47 -------------EAILGDRVELVVGDIADAE------LVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTL 107 (346)
T ss_dssp -------------GGGCSSSEEEEECCTTCHH------HHHHHHTTCSEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHH
T ss_pred -------------HHhhcCCeEEEEccCCCHH------HHHHHHhhhhhhhhhhhcccccchhhCcccceeeehHhHHhh
Confidence 1112368999999999977 8889999999999999986543 34567889999999999
Q ss_pred HHHHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHH
Q psy17528 205 LALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLV 284 (366)
Q Consensus 205 l~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l 284 (366)
++.+... + .+++++||+.+|+... ..|+....+..+. ...++.......+.|+.+|+.+|.++
T Consensus 108 l~~~~~~-~-~k~i~~ss~~vyg~~~-~~~~~~~~~~~~~--------------~~~~e~~~~~p~s~Y~~sK~~~E~~~ 170 (346)
T d1oc2a_ 108 LEAARKY-D-IRFHHVSTDEVYGDLP-LREDLPGHGEGPG--------------EKFTAETNYNPSSPYSSTKAASDLIV 170 (346)
T ss_dssp HHHHHHH-T-CEEEEEEEGGGGCCBC-CGGGSTTTTCSTT--------------SSBCTTSCCCCCSHHHHHHHHHHHHH
T ss_pred hhhhccc-c-ccccccccceEecccC-ccccccccccCcc--------------cccccCCCCCCCCHHHHHHHHHHHHH
Confidence 9999886 3 4899999998886532 2222111110000 00000011122378999999999999
Q ss_pred HHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 285 RQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 285 ~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
+.++ .+++++++||++||||+..... .+..++.....+....++++++..++|+|++|+|++++.++.++.
T Consensus 171 ~~~~~~~~i~~~ilR~~~vyGp~~~~~~-------~~~~~i~~~~~~~~~~i~~~g~~~r~~i~v~D~a~a~~~~~~~~~ 243 (346)
T d1oc2a_ 171 KAWVRSFGVKATISNCSNNYGPYQHIEK-------FIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAILTKGR 243 (346)
T ss_dssp HHHHHHHCCEEEEEEECCEESTTCCTTS-------HHHHHHHHHHHTCCCEEETTSCCEEECEEHHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCCEEEEeecceeCCCCCccc-------hhHHHHHHHHcCCceeEeCCCCccccccchhhHHHHHHHHHhhcc
Confidence 8877 7899999999999998764321 235566677788888888999999999999999999999888765
Q ss_pred hc
Q psy17528 363 FS 364 (366)
Q Consensus 363 ~~ 364 (366)
..
T Consensus 244 ~~ 245 (346)
T d1oc2a_ 244 MG 245 (346)
T ss_dssp TT
T ss_pred cC
Confidence 43
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=6.2e-27 Score=223.50 Aligned_cols=231 Identities=13% Similarity=0.107 Sum_probs=174.2
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
|+|||||||||||++|+++|++.|. ++|+++++......
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~--~~V~~ld~~~~~~~--------------------------------------- 39 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDH--YEVYGLDIGSDAIS--------------------------------------- 39 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTT--CEEEEEESCCGGGG---------------------------------------
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC--CEEEEEeCCCcchh---------------------------------------
Confidence 5899999999999999999999972 47999988643211
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHH-HHhCcCEEEEcCcccChhh---hHHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEEL-LISQTTIIFHIAATVRFDE---HIRTAYNINVKGTQTI 204 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~-~~~~~d~Vih~a~~~~~~~---~~~~~~~~nv~~~~~l 204 (366)
.....++++++.+|+++.. ++.+ +..++|+|||+|+...... .....+..|+.++.++
T Consensus 40 ------------~~~~~~~~~~i~~Di~~~~------~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~nv~gt~~l 101 (342)
T d2blla1 40 ------------RFLNHPHFHFVEGDISIHS------EWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRI 101 (342)
T ss_dssp ------------GGTTCTTEEEEECCTTTCS------HHHHHHHHHCSEEEECBCCCCHHHHHHSHHHHHHHHTHHHHHH
T ss_pred ------------hhccCCCeEEEECccCChH------HHHHHHHhCCCccccccccccccccccCCcccccccccccccc
Confidence 0111368999999999876 4444 6678999999999876443 3457889999999999
Q ss_pred HHHHHhcCCCcEEEEeeCcceecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHH
Q psy17528 205 LALAKRMKGLKSFVHVSTAYCNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAED 282 (366)
Q Consensus 205 l~~a~~~~~~~~~v~iSS~~~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~ 282 (366)
++++.+. +. +++++||+.+|+... ...|.....+..+ .....+.|+.+|..+|+
T Consensus 102 l~~~~~~-~~-~~~~~ss~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~p~~~Y~~sK~~~E~ 157 (342)
T d2blla1 102 IRYCVKY-RK-RIIFPSTSEVYGMCSDKYFDEDHSNLIVGP----------------------VNKPRWIYSVSKQLLDR 157 (342)
T ss_dssp HHHHHHT-TC-EEEEECCGGGGBTCCCSSBCTTTCCCBCCC----------------------TTCGGGHHHHHHHHHHH
T ss_pred ccccccc-cc-cccccccccccccccccccccccccccccc----------------------cCCCcchhhhcccchhh
Confidence 9999986 44 667889988876533 2333221111100 00111789999999999
Q ss_pred HHHHhc--CCCCEEEEecCccccCCCCCCCccc-cccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHH
Q psy17528 283 LVRQVG--HELPICVLRPSIVFPTLQEPMPLWI-KGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAW 359 (366)
Q Consensus 283 ~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~ 359 (366)
++..+. .+++++++||+.+||++.....+.. ........++.+++.|.+..++++|+..++|+|++|+|+|+..+++
T Consensus 158 ~~~~~~~~~~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~r~~i~v~D~~~a~~~~~~ 237 (342)
T d2blla1 158 VIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIE 237 (342)
T ss_dssp HHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEGGGSCCEEECEEHHHHHHHHHHHHH
T ss_pred hhhhhhcccCceeEEeeccccccccccccccccccccccchHHHHHHHhCCCccccCCCCeeeeecccccccceeeeehh
Confidence 999887 6899999999999999765543222 2223457788889999999999999999999999999999999998
Q ss_pred hhh
Q psy17528 360 YFL 362 (366)
Q Consensus 360 ~~~ 362 (366)
++.
T Consensus 238 ~~~ 240 (342)
T d2blla1 238 NAG 240 (342)
T ss_dssp CGG
T ss_pred hcc
Confidence 753
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=99.95 E-value=3.5e-27 Score=226.45 Aligned_cols=250 Identities=17% Similarity=0.102 Sum_probs=172.5
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+++|||||||||||++|+++|++.| ++|++++|+.+. ...+.+.. +..
T Consensus 11 gk~VlVTG~sGfIGs~l~~~Ll~~G---~~V~~~vR~~~~---~~~~~~~~-----~~~--------------------- 58 (342)
T d1y1pa1 11 GSLVLVTGANGFVASHVVEQLLEHG---YKVRGTARSASK---LANLQKRW-----DAK--------------------- 58 (342)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSHHH---HHHHHHHH-----HHH---------------------
T ss_pred cCEEEEECCCCHHHHHHHHHHHHCc---CEEEEEeCCchh---HHHHHHhh-----hcc---------------------
Confidence 8999999999999999999999999 899999997432 12222111 100
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILAL 207 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll~~ 207 (366)
.......++.+|+.+.. .+.+++.++|+|+|+++...+.......+..|+.++.++++.
T Consensus 59 ---------------~~~~~~~~~~~Dl~~~~------~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~nv~gt~~ll~~ 117 (342)
T d1y1pa1 59 ---------------YPGRFETAVVEDMLKQG------AYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRA 117 (342)
T ss_dssp ---------------STTTEEEEECSCTTSTT------TTTTTTTTCSEEEECCCCCSCCSCHHHHHHHHHHHHHHHHHH
T ss_pred ---------------ccccccEEEeccccchh------hhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHh
Confidence 11134456789999887 677788899999999998877777778889999999999999
Q ss_pred HHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhh---hcccCCCCchHHHHHHHHHHHH
Q psy17528 208 AKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLN---EHIIGGKPNSYTLTKATAEDLV 284 (366)
Q Consensus 208 a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Y~~sK~~~E~~l 284 (366)
+.+.+++++|||+||+.+.....+..+..+...... ..+...... +.......+.|+.+|..+|+++
T Consensus 118 ~~~~~~v~~~i~~SS~~~~~~~~~~~~~~~~~e~~~----------~~~~~~~~~~~~e~~~~~p~~~Y~~sK~~~E~~~ 187 (342)
T d1y1pa1 118 AAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSW----------NLESIDKAKTLPESDPQKSLWVYAASKTEAELAA 187 (342)
T ss_dssp HHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCC----------CHHHHHHHHHSCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred hhcccccccccccccceeeccCCCCCCCcccccccc----------ccccccccccccccCCCCCcCcccchhHhHHHHH
Confidence 999878999999999855432222111111100000 000011100 0011111268999999999988
Q ss_pred HHhc----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHh
Q psy17528 285 RQVG----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWY 360 (366)
Q Consensus 285 ~~~~----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~ 360 (366)
+.+. .++.++++||+.||||...+... ......++.....|...... .+...++|+|++|+|++++.++++
T Consensus 188 ~~~~~~~~~~~~~~~i~p~~v~Gp~~~~~~~----~~~~~~~~~~l~~g~~~~~~-~~~~~~~~v~v~Dva~~~i~~l~~ 262 (342)
T d1y1pa1 188 WKFMDENKPHFTLNAVLPNYTIGTIFDPETQ----SGSTSGWMMSLFNGEVSPAL-ALMPPQYYVSAVDIGLLHLGCLVL 262 (342)
T ss_dssp HHHHHHHCCSSEEEEEEESEEECCCSCTTTC----CCHHHHHHHHHHTTCCCHHH-HTCCSEEEEEHHHHHHHHHHHHHC
T ss_pred HHhhhhcccccccceecccceeCCCCCcccc----ccchHHHHHHHHcCCcCccc-CCccceeeeeHHHHHHHHHHhhcC
Confidence 7665 56788999999999987543221 12345566777777655443 345668999999999999999988
Q ss_pred hhhcC
Q psy17528 361 FLFSC 365 (366)
Q Consensus 361 ~~~~~ 365 (366)
+...|
T Consensus 263 ~~~~g 267 (342)
T d1y1pa1 263 PQIER 267 (342)
T ss_dssp TTCCS
T ss_pred ccccc
Confidence 76554
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.94 E-value=3.4e-26 Score=217.24 Aligned_cols=233 Identities=15% Similarity=0.043 Sum_probs=167.6
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
|++||||||||||+||++.|+++| ++|++++|..+... .+++.++.. .
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g---~~V~~~~r~~~~~~-~~~~~~~~~---------~------------------- 49 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKG---YEVHGLIRRSSNFN-TQRINHIYI---------D------------------- 49 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCCSSCC-CTTTTTTC------------------------------
T ss_pred CEEEEeCCccHHHHHHHHHHHHCc---CEEEEEECCCcccc-hhhhhhhhh---------h-------------------
Confidence 789999999999999999999999 89999999653210 000000000 0
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccChh---hhHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRFD---EHIRTAYNINVKGTQT 203 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~~---~~~~~~~~~nv~~~~~ 203 (366)
........+.++.+|+.+.+ .+...+. ++|+|||+|+..... .++...+..|+.++.+
T Consensus 50 -----------~~~~~~~~~~~~~~Di~~~~------~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~ 112 (339)
T d1n7ha_ 50 -----------PHNVNKALMKLHYADLTDAS------SLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALR 112 (339)
T ss_dssp -----------------CCEEEEECCTTCHH------HHHHHHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHH
T ss_pred -----------hhhccccceEEEEccccCHH------HHHHHHhhhccchhhhccccccccccccCccccccccccccch
Confidence 00112357889999999876 6777664 679999999987654 3456788999999999
Q ss_pred HHHHHHhc----CCCcEEEEeeCcceecCcc-ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHH
Q psy17528 204 ILALAKRM----KGLKSFVHVSTAYCNCDRK-FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKA 278 (366)
Q Consensus 204 ll~~a~~~----~~~~~~v~iSS~~~~~~~~-~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~ 278 (366)
++++++.. ....++++.||+++++... +++|+.+..|. +.|+.+|+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~~~~~E~~~~~p~-----------------------------~~Y~~sK~ 163 (339)
T d1n7ha_ 113 LLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPPPQSETTPFHPR-----------------------------SPYAASKC 163 (339)
T ss_dssp HHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCSSBCTTSCCCCC-----------------------------SHHHHHHH
T ss_pred hhhhhhhcccccccceeeeecccceecccCCCCCCCCCCCCCc-----------------------------chhhHHHH
Confidence 98887643 2445788888888776544 46666555443 88999999
Q ss_pred HHHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHh-cCcceeecCCCCcccCcccHHHHHHHHH
Q psy17528 279 TAEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAG-TGLIRVVQTDPNISMDVVPGDRVINAMA 355 (366)
Q Consensus 279 ~~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~l~~~~~~~~~~v~vdDva~ai~ 355 (366)
.+|.++..+. ++++++++||++||||+..+. +. ...+...+.... .+......+++.+.+||+|++|+|+++.
T Consensus 164 ~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~--~~--~~~i~~~~~~~~~~~~~~~~~g~~~~~rd~~~v~D~a~~~~ 239 (339)
T d1n7ha_ 164 AAHWYTVNYREAYGLFACNGILFNHESPRRGEN--FV--TRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVEAMW 239 (339)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEECCEECTTSCTT--SH--HHHHHHHHHHHHHTSCCCEEESCTTCEEECEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEEEccccCCCCCCC--CC--cchhhHHHHHHhcCCCCeEEeCCCCccccceeeehHHHHHH
Confidence 9999998877 789999999999999975421 11 112222333333 3444556678999999999999999999
Q ss_pred HHHHhhhh
Q psy17528 356 ALAWYFLF 363 (366)
Q Consensus 356 ~~~~~~~~ 363 (366)
.+++++..
T Consensus 240 ~~~~~~~~ 247 (339)
T d1n7ha_ 240 LMLQQEKP 247 (339)
T ss_dssp HHHTSSSC
T ss_pred HHHhcCCC
Confidence 99987653
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=2.8e-25 Score=212.98 Aligned_cols=230 Identities=17% Similarity=0.129 Sum_probs=164.0
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
|.|||||||||||++|+++|+++| ++|++++|...+... .+... +..
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g---~~V~~~d~~~~~~~~--~~~~~------~~~---------------------- 48 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENG---YDCVVADNLSNSTYD--SVARL------EVL---------------------- 48 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCSSCCTH--HHHHH------HHH----------------------
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCc---CeEEEEECCCCcchh--HHHhH------Hhh----------------------
Confidence 679999999999999999999998 788898875433211 11100 000
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccChh---hhHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRFD---EHIRTAYNINVKGTQT 203 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~~---~~~~~~~~~nv~~~~~ 203 (366)
...++.++.+|+.|.+ .+..++. ++|+|||+|+..... ........+|+.++.+
T Consensus 49 ---------------~~~~v~~~~~Dl~d~~------~l~~~~~~~~~d~VihlAa~~~~~~~~~~~~~~~~~N~~~t~~ 107 (347)
T d1z45a2 49 ---------------TKHHIPFYEVDLCDRK------GLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVV 107 (347)
T ss_dssp ---------------HTSCCCEEECCTTCHH------HHHHHHHHSCCCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHH
T ss_pred ---------------cccCCeEEEeecCCHH------HHHHHHhccCCCEEEEccccccccccccCcccccccchhhhHH
Confidence 1257889999999977 7777776 789999999986533 3446788899999999
Q ss_pred HHHHHHhcCCCcEEEEeeCcceecCccc------cccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHH
Q psy17528 204 ILALAKRMKGLKSFVHVSTAYCNCDRKF------IAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTK 277 (366)
Q Consensus 204 ll~~a~~~~~~~~~v~iSS~~~~~~~~~------~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK 277 (366)
+++++++. ++++|+++||..+|+.... +.|+....| .+.|+.+|
T Consensus 108 ll~~~~~~-~i~~~i~~SS~~vyg~~~~~~~~~~~~e~~~~~p-----------------------------~~~Y~~sK 157 (347)
T d1z45a2 108 LLELMQQY-NVSKFVFSSSATVYGDATRFPNMIPIPEECPLGP-----------------------------TNPYGHTK 157 (347)
T ss_dssp HHHHHHHH-TCCEEEEEEEGGGGCCGGGSTTCCSBCTTSCCCC-----------------------------CSHHHHHH
T ss_pred HHHHHHhc-ccceEEeecceeeecCcccCCCCCccccccCCCC-----------------------------CChhHhHH
Confidence 99999987 8899999999999975432 223222222 27899999
Q ss_pred HHHHHHHHHhc----CCCCEEEEecCccccCCCCCCCccccc--cchHHHHHHHHh--cCcceeecCC------CCcccC
Q psy17528 278 ATAEDLVRQVG----HELPICVLRPSIVFPTLQEPMPLWIKG--FNGVMALALGAG--TGLIRVVQTD------PNISMD 343 (366)
Q Consensus 278 ~~~E~~l~~~~----~gl~~~ilRp~~v~G~~~~~~~~~~~~--~~~~~~~~~~~~--~g~~~~l~~~------~~~~~~ 343 (366)
..+|++++.+. .+++++++||++|||+......+.... ...+..++.... .+.+..++++ +...+|
T Consensus 158 ~~~E~~~~~~~~~~~~~~~~~~lR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~~~~~~d 237 (347)
T d1z45a2 158 YAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRD 237 (347)
T ss_dssp HHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------CCSSCEEC
T ss_pred HHHHHHHHHHHHhhccCCcEEEEeecceEeecCCCccCCCccccHHHHHHHHHHHHhcCCCCeEEeCCCccccCCceeee
Confidence 99999998764 689999999999999866443222111 112344444443 3344444444 456778
Q ss_pred cccHHHHHHHHHHHHHhhh
Q psy17528 344 VVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~~~ 362 (366)
++++.|++.+++.++....
T Consensus 238 ~~~~~~~~~~~~~~~~~~~ 256 (347)
T d1z45a2 238 YIHVVDLAKGHIAALQYLE 256 (347)
T ss_dssp EEEHHHHHHHHHHHHHHHH
T ss_pred eeeeecccccccccccccc
Confidence 8889999999998887643
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=6.8e-26 Score=213.54 Aligned_cols=215 Identities=13% Similarity=0.020 Sum_probs=158.5
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
.|+|||||||||||++|+++|+++| +.|+++++..
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g---~~vi~~~~~~------------------------------------------ 36 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRG---DVELVLRTRD------------------------------------------ 36 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCT---TEEEECCCTT------------------------------------------
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCc---CEEEEecCch------------------------------------------
Confidence 4689999999999999999999998 5665544321
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccChh----hhHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRFD----EHIRTAYNINVKGT 201 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~~----~~~~~~~~~nv~~~ 201 (366)
..|+.+.. .+..+++ .+|.|+|+|+..... ....+.++.|+.++
T Consensus 37 ------------------------~~~~~~~~------~~~~~~~~~~~d~v~~~a~~~~~~~~~~~~~~~~~~~Nv~gt 86 (315)
T d1e6ua_ 37 ------------------------ELNLLDSR------AVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIE 86 (315)
T ss_dssp ------------------------TCCTTCHH------HHHHHHHHHCCSEEEECCCCCCCHHHHHHCHHHHHHHHHHHH
T ss_pred ------------------------hccccCHH------HHHHHHhhcCCCEEEEcchhccccccchhhHHHHHHHHHHHH
Confidence 13555544 5666664 689999999876432 34466788999999
Q ss_pred HHHHHHHHhcCCCcEEEEeeCcceecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHH
Q psy17528 202 QTILALAKRMKGLKSFVHVSTAYCNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKAT 279 (366)
Q Consensus 202 ~~ll~~a~~~~~~~~~v~iSS~~~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~ 279 (366)
.+++++|.+. ++++|||+||..+|+... +++|+...... + ....+.|+.+|+.
T Consensus 87 ~~ll~~a~~~-~v~~~i~~SS~~vyg~~~~~~~~E~~~~~~~-~-----------------------~~~~~~Y~~sK~~ 141 (315)
T d1e6ua_ 87 SNIIHAAHQN-DVNKLLFLGSSCIYPKLAKQPMAESELLQGT-L-----------------------EPTNEPYAIAKIA 141 (315)
T ss_dssp HHHHHHHHHT-TCCEEEEECCGGGSCTTCCSSBCGGGTTSSC-C-----------------------CGGGHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCEEEEECCceEcCCCCCCCccCCccccCC-C-----------------------CCCCCHHHHHHHH
Confidence 9999999987 899999999999997543 45554322110 0 0001579999999
Q ss_pred HHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccc--hHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHH
Q psy17528 280 AEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFN--GVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMA 355 (366)
Q Consensus 280 ~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~ 355 (366)
+|++++.+. ++++++++||++||||+............ ...........+....+.+++...++|+|++|+++++.
T Consensus 142 ~E~~~~~~~~~~gl~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~v~d~~~~~~ 221 (315)
T d1e6ua_ 142 GIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASI 221 (315)
T ss_dssp HHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCSCCEECEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEeeccEECCCCCCCccccccceeeeccchhhhhccCCceEEcCCCceEEEEEEeehhHHHHH
Confidence 999999877 69999999999999998754322211111 12333455566777788889999999999999999999
Q ss_pred HHHHhhh
Q psy17528 356 ALAWYFL 362 (366)
Q Consensus 356 ~~~~~~~ 362 (366)
.++....
T Consensus 222 ~~~~~~~ 228 (315)
T d1e6ua_ 222 HVMELAH 228 (315)
T ss_dssp HHHHSCH
T ss_pred Hhhhhcc
Confidence 9886553
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.7e-25 Score=204.01 Aligned_cols=203 Identities=21% Similarity=0.146 Sum_probs=156.5
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
|++++|||||||||||++|+++|+++| .+++|++++|++....
T Consensus 12 m~~k~IlItGaTG~iG~~l~~~Ll~~g-~~~~v~~~~R~~~~~~------------------------------------ 54 (232)
T d2bkaa1 12 MQNKSVFILGASGETGRVLLKEILEQG-LFSKVTLIGRRKLTFD------------------------------------ 54 (232)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHT-CCSEEEEEESSCCCCC------------------------------------
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCC-CCCEEEEEecChhhhc------------------------------------
Confidence 457899999999999999999999997 5569999999864321
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTIL 205 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll 205 (366)
......+....+|+.+.+ .+...+.++|+|||++|.........+..++|+.++.+++
T Consensus 55 ----------------~~~~~~i~~~~~D~~~~~------~~~~~~~~~d~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (232)
T d2bkaa1 55 ----------------EEAYKNVNQEVVDFEKLD------DYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSA 112 (232)
T ss_dssp ----------------SGGGGGCEEEECCGGGGG------GGGGGGSSCSEEEECCCCCHHHHHHHHHHHHHTHHHHHHH
T ss_pred ----------------ccccceeeeeeecccccc------cccccccccccccccccccccccchhhhhhhcccccceee
Confidence 112256777888998876 7888889999999999987666677788899999999999
Q ss_pred HHHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHH
Q psy17528 206 ALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVR 285 (366)
Q Consensus 206 ~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~ 285 (366)
++|.+. ++++|||+||..++... .+.|+.+|..+|+.++
T Consensus 113 ~~a~~~-~v~~fi~~Ss~~~~~~~----------------------------------------~~~Y~~~K~~~E~~l~ 151 (232)
T d2bkaa1 113 ELAKAG-GCKHFNLLSSKGADKSS----------------------------------------NFLYLQVKGEVEAKVE 151 (232)
T ss_dssp HHHHHT-TCCEEEEECCTTCCTTC----------------------------------------SSHHHHHHHHHHHHHH
T ss_pred eccccc-CccccccCCccccccCc----------------------------------------cchhHHHHHHhhhccc
Confidence 999987 89999999998765222 1789999999999998
Q ss_pred HhcCCCC-EEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhhhh
Q psy17528 286 QVGHELP-ICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYFLF 363 (366)
Q Consensus 286 ~~~~gl~-~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~~ 363 (366)
+.. ++ ++|+||+.+||++.... ....+........ ..+......|+++|+|+|++.++..+..
T Consensus 152 ~~~--~~~~~IlRP~~i~G~~~~~~--------~~~~~~~~~~~~~-----~~~~~~~~~I~~~dvA~a~i~~~~~~~~ 215 (232)
T d2bkaa1 152 ELK--FDRYSVFRPGVLLCDRQESR--------PGEWLVRKFFGSL-----PDSWASGHSVPVVTVVRAMLNNVVRPRD 215 (232)
T ss_dssp TTC--CSEEEEEECCEEECTTGGGS--------HHHHHHHHHHCSC-----CTTGGGGTEEEHHHHHHHHHHHHTSCCC
T ss_pred ccc--ccceEEecCceeecCCCcCc--------HHHHHHHHHhhcc-----CCcccCCCeEEHHHHHHHHHHHHhcCcc
Confidence 874 54 89999999999865421 1122223333221 1223344579999999999988876643
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=99.93 E-value=4.7e-25 Score=210.66 Aligned_cols=228 Identities=20% Similarity=0.226 Sum_probs=169.2
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
+|+++|+|||||||||||++|+++|++.| +.|++++|+.++... +++..
T Consensus 4 ~~~~~KkILVTG~tGfIGs~lv~~Ll~~g---~~V~~~~r~~~~~~~-----------~~~~~----------------- 52 (356)
T d1rkxa_ 4 SFWQGKRVFVTGHTGFKGGWLSLWLQTMG---ATVKGYSLTAPTVPS-----------LFETA----------------- 52 (356)
T ss_dssp HHHTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSCSSSSC-----------HHHHT-----------------
T ss_pred hhhCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEECCCCccHH-----------HHhhh-----------------
Confidence 57899999999999999999999999999 889999998764321 01111
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccChh---hhHHHHHHHHH
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRFD---EHIRTAYNINV 198 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~~---~~~~~~~~~nv 198 (366)
...+.++++.+|++|.+ .+.+++. .+|+|+|+|+..... ..+..+..+|+
T Consensus 53 -------------------~~~~~i~~~~~Dl~d~~------~l~~~~~~~~~~~v~~~aa~~~~~~~~~~~~~~~~~Nv 107 (356)
T d1rkxa_ 53 -------------------RVADGMQSEIGDIRDQN------KLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNV 107 (356)
T ss_dssp -------------------TTTTTSEEEECCTTCHH------HHHHHHHHHCCSEEEECCSCCCHHHHHHCHHHHHHHHT
T ss_pred -------------------hcccCCeEEEeeccChH------hhhhhhhhchhhhhhhhhccccccccccCCcccccccc
Confidence 12367999999999977 6777765 679999999976543 35577889999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeeCcceecCcc---ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHH
Q psy17528 199 KGTQTILALAKRMKGLKSFVHVSTAYCNCDRK---FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTL 275 (366)
Q Consensus 199 ~~~~~ll~~a~~~~~~~~~v~iSS~~~~~~~~---~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~ 275 (366)
.++.++++++.+.+..+.+++.|++.++.... +..|+....|. +.|+.
T Consensus 108 ~g~~n~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~p~-----------------------------~~y~~ 158 (356)
T d1rkxa_ 108 MGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENEAMGGY-----------------------------DPYSN 158 (356)
T ss_dssp HHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTTSCBCCS-----------------------------SHHHH
T ss_pred ccchhhhhhhhccccccccccccccccccccccccccccccccCCC-----------------------------Ccccc
Confidence 99999999999875666677777765554332 23333322222 78999
Q ss_pred HHHHHHHHHHHhc-----------CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCc
Q psy17528 276 TKATAEDLVRQVG-----------HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDV 344 (366)
Q Consensus 276 sK~~~E~~l~~~~-----------~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~ 344 (366)
+|...|..+..+. +++.++++||++||||++.+... +...+.+...+....+++.+...+++
T Consensus 159 ~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~-------~i~~~~~~~~~~~~~~~~~~~~~~~~ 231 (356)
T d1rkxa_ 159 SKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDR-------IVPDILRAFEQSQPVIIRNPHAIRPW 231 (356)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSC-------HHHHHHHHHHTTCCEECSCTTCEECC
T ss_pred ccccchhhhhHHhhhcccchhccccCceEEeccCCCeeCCCcchhhH-------HHHHHHHHHhCCCceEEeeccccccc
Confidence 9999998886543 46889999999999998643221 22233333444445567788999999
Q ss_pred ccHHHHHHHHHHHHHhhhh
Q psy17528 345 VPGDRVINAMAALAWYFLF 363 (366)
Q Consensus 345 v~vdDva~ai~~~~~~~~~ 363 (366)
+|++|++.|++.+++....
T Consensus 232 ~~v~D~~~a~~~~~~~~~~ 250 (356)
T d1rkxa_ 232 QHVLEPLSGYLLLAQKLYT 250 (356)
T ss_dssp EETHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhhhhhcc
Confidence 9999999999999887654
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.3e-24 Score=207.84 Aligned_cols=234 Identities=18% Similarity=0.182 Sum_probs=162.4
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCc----CHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGST----SITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
|||||||||||||++|+++|++.| +.|++++|..... ...+++.....
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g---~~V~~ld~~~~~~~~~~~~~~~~~~~~~------------------------- 54 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAG---YLPVVIDNFHNAFRGGGSLPESLRRVQE------------------------- 54 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTT---CCEEEEECSSSSCBCSSSSBHHHHHHHH-------------------------
T ss_pred CeEEEECCCcHHHHHHHHHHHHCc---CEEEEEECCCccccccccchHHHHHHHH-------------------------
Confidence 689999999999999999999998 7888887632111 11111111000
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccChh---hhHHHHHHHHHH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRFD---EHIRTAYNINVK 199 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~~---~~~~~~~~~nv~ 199 (366)
....++.++.+|++|.+ .+..++. +.++++|+||..+.. .++...++.|+.
T Consensus 55 ------------------~~~~~~~~~~~Dl~d~~------~l~~~~~~~~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~ 110 (346)
T d1ek6a_ 55 ------------------LTGRSVEFEEMDILDQG------ALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLT 110 (346)
T ss_dssp ------------------HHTCCCEEEECCTTCHH------HHHHHHHHCCEEEEEECCSCCCHHHHHHCHHHHHHHHHH
T ss_pred ------------------hcCCCcEEEEeeccccc------cccccccccccccccccccccCcHhhHhCHHHHHHhhhc
Confidence 01367899999999977 7777665 567899999986643 245678899999
Q ss_pred HHHHHHHHHHhcCCCcEEEEeeCcceecCcccc-ccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHH
Q psy17528 200 GTQTILALAKRMKGLKSFVHVSTAYCNCDRKFI-AEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKA 278 (366)
Q Consensus 200 ~~~~ll~~a~~~~~~~~~v~iSS~~~~~~~~~~-~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~ 278 (366)
++.+++++++.. ++++|+++||+.+++..... .+...+. ....++|+.+|.
T Consensus 111 gt~~l~~~~~~~-~v~~~i~~ss~~~~~~~~~~~~~~~~~~---------------------------~~~~~~Y~~~k~ 162 (346)
T d1ek6a_ 111 GTIQLLEIMKAH-GVKNLVFSSSATVYGNPQYLPLDEAHPT---------------------------GGCTNPYGKSKF 162 (346)
T ss_dssp HHHHHHHHHHHT-TCCEEEEEEEGGGGCSCSSSSBCTTSCC---------------------------CCCSSHHHHHHH
T ss_pred ccccccchhhhc-Ccccccccccceeeeccccccccccccc---------------------------cccCChHHHHHH
Confidence 999999999987 89999999999888654421 1111110 111278999999
Q ss_pred HHHHHHHHhc---CCCCEEEEecCccccCCCCCCCcccc-c-cchHHHHHHH--HhcCcceeec------CCCCcccCcc
Q psy17528 279 TAEDLVRQVG---HELPICVLRPSIVFPTLQEPMPLWIK-G-FNGVMALALG--AGTGLIRVVQ------TDPNISMDVV 345 (366)
Q Consensus 279 ~~E~~l~~~~---~gl~~~ilRp~~v~G~~~~~~~~~~~-~-~~~~~~~~~~--~~~g~~~~l~------~~~~~~~~~v 345 (366)
.+|+.+.++. .+++.+++||+++||+......+... . .......+.. ..++....++ .++.+.+||+
T Consensus 163 ~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~g~~~Rdfi 242 (346)
T d1ek6a_ 163 FIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYI 242 (346)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCEECEE
T ss_pred HHHHHHHHHHHhccCCceEEEeecceeccCCCCCcCccccccHHHHHHHHHHHHHcCCCcEEEcCCcccCCCCCeeEeEE
Confidence 9999998765 58999999999999997643221111 1 1122333322 2234444443 3466789999
Q ss_pred cHHHHHHHHHHHHHhhh
Q psy17528 346 PGDRVINAMAALAWYFL 362 (366)
Q Consensus 346 ~vdDva~ai~~~~~~~~ 362 (366)
|++|+|.++..++....
T Consensus 243 ~v~D~a~~~~~~~~~~~ 259 (346)
T d1ek6a_ 243 HVVDLAKGHIAALRKLK 259 (346)
T ss_dssp EHHHHHHHHHHHHHHHT
T ss_pred EEEeccchhhhhccccc
Confidence 99999999998876653
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.93 E-value=1.5e-24 Score=210.60 Aligned_cols=250 Identities=14% Similarity=0.100 Sum_probs=162.4
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHh-CCCccEEEEEEcCC---CCc---CHHHHHHHHhhhhhhhhhhhcCCCCCCccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRC-CPQIRKIILLIRTR---GST---SITQRVYNYFNDAVFDRMRLECPNYADKVDIG 120 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~-g~~~~~V~~~~R~~---~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (366)
.|+|||||||||||++|+++|+++ | +.|+++++-. ... ...+++...+.. ...
T Consensus 2 ~MKVLITG~tGfIGs~lv~~LL~~~~---~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~-----~~~------------ 61 (383)
T d1gy8a_ 2 HMRVLVCGGAGYIGSHFVRALLRDTN---HSVVIVDSLVGTHGKSDHVETRENVARKLQQ-----SDG------------ 61 (383)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCC---CEEEEEECCTTTTTCCTTSCCHHHHHHHHHH-----SCS------------
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHhCC---CEEEEEecCCcccccchhhhhhhhHHHHhhh-----hcc------------
Confidence 469999999999999999999975 4 7899987511 111 111111111110 000
Q ss_pred cccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh---CcCEEEEcCcccChh---hhHHHHH
Q psy17528 121 ITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS---QTTIIFHIAATVRFD---EHIRTAY 194 (366)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~---~~d~Vih~a~~~~~~---~~~~~~~ 194 (366)
.........+.++.+|++|.+ .+.++++ ++|+|||+|+..... .......
T Consensus 62 ------------------~~~~~~~~~~~~~~~Di~d~~------~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~ 117 (383)
T d1gy8a_ 62 ------------------PKPPWADRYAALEVGDVRNED------FLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYY 117 (383)
T ss_dssp ------------------SCCTTTTCCCEEEESCTTCHH------HHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHH
T ss_pred ------------------ccccccccceEEEECcccCHH------Hhhhhhhccceeehhhccccccccccccccccccc
Confidence 001123457889999999977 6777765 679999999976543 3445678
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHH
Q psy17528 195 NINVKGTQTILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYT 274 (366)
Q Consensus 195 ~~nv~~~~~ll~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~ 274 (366)
+.|+.++.++++++.+. ++++++++||..+++............|..++ ......+.|+
T Consensus 118 ~~N~~~t~~~l~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~e~--------------------~~~~p~~~Y~ 176 (383)
T d1gy8a_ 118 DNNVVGILRLLQAMLLH-KCDKIIFSSSAAIFGNPTMGSVSTNAEPIDIN--------------------AKKSPESPYG 176 (383)
T ss_dssp HHHHHHHHHHHHHHHHT-TCCEEEEEEEGGGTBSCCC-----CCCCBCTT--------------------SCCBCSSHHH
T ss_pred ccccccccccchhhhcc-CCcccccccccccccccccccccccccccccc--------------------cCCCCCCHHH
Confidence 89999999999999987 88899999998777643321111111111000 0111128899
Q ss_pred HHHHHHHHHHHHhc--CCCCEEEEecCccccCCCCCCCc-cccccch-HHHHHHH----------------HhcCcceee
Q psy17528 275 LTKATAEDLVRQVG--HELPICVLRPSIVFPTLQEPMPL-WIKGFNG-VMALALG----------------AGTGLIRVV 334 (366)
Q Consensus 275 ~sK~~~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~-~~~~~~~-~~~~~~~----------------~~~g~~~~l 334 (366)
.+|+.+|++++.+. ++++++++||++||||+..+... +...... +..++.+ ...+....+
T Consensus 177 ~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~~~~~~~~~~~~~~~~ip~ii~~~~~~~~~~~~~~~~~~~~~~~~~~i 256 (383)
T d1gy8a_ 177 ESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQRLTIHEDASTDKRMPI 256 (383)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHHSCC-----------CCCEEE
T ss_pred hhHhHHHHHHHHHHHHhCCCEEEEecceeeccCccccccccccccchhHHHHHHHHHhhccccccchhhhhhhcCCceEE
Confidence 99999999999877 79999999999999998764321 1111111 1111111 122333333
Q ss_pred c------CCCCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 335 Q------TDPNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 335 ~------~~~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
+ .+|.+.+||+|++|+|++++.+++...
T Consensus 257 ~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~~~~~ 290 (383)
T d1gy8a_ 257 FGTDYPTPDGTCVRDYVHVCDLASAHILALDYVE 290 (383)
T ss_dssp ECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHH
T ss_pred eCCccccCCCCeEEeeEEHHHHHHHHHHHHhhhc
Confidence 3 347788999999999999999987653
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=99.92 E-value=9.8e-24 Score=198.85 Aligned_cols=240 Identities=19% Similarity=0.150 Sum_probs=162.9
Q ss_pred eEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccccc
Q psy17528 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNYF 129 (366)
Q Consensus 50 ~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (366)
+|||||||||||++|+++|+++| ++|+++++-... ...+++....
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g---~~V~~id~~~~~-~~~~~~~~~~------------------------------- 46 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQG---IDLIVFDNLSRK-GATDNLHWLS------------------------------- 46 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCCST-THHHHHHHHH-------------------------------
T ss_pred EEEEECCCcHHHHHHHHHHHHCc---CEEEEEECCCcc-cchhHHHHhh-------------------------------
Confidence 79999999999999999999998 788888764322 2222222211
Q ss_pred chhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccChhh---hHHHHHHHHHHHHHHH
Q psy17528 130 NDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRFDE---HIRTAYNINVKGTQTI 204 (366)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~~~---~~~~~~~~nv~~~~~l 204 (366)
...+++++.+|+++.+ .+.++++ ++|+|||+|+...... ++....++|+.|+.++
T Consensus 47 --------------~~~~~~~i~~Di~~~~------~l~~~~~~~~~d~Vih~aa~~~~~~~~~~~~~~~~~Nv~gt~nl 106 (338)
T d1orra_ 47 --------------SLGNFEFVHGDIRNKN------DVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNL 106 (338)
T ss_dssp --------------TTCCCEEEECCTTCHH------HHHHHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHH
T ss_pred --------------ccCCcEEEEcccCCHH------HHHHHHHhcCCceEEeecccccccccccChHHHHHHHHHHHHHH
Confidence 1257899999999977 7888876 4699999999876543 4577889999999999
Q ss_pred HHHHHhcCCCcEEEEeeCc-ceecCcc--ccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHH
Q psy17528 205 LALAKRMKGLKSFVHVSTA-YCNCDRK--FIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAE 281 (366)
Q Consensus 205 l~~a~~~~~~~~~v~iSS~-~~~~~~~--~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E 281 (366)
++++.+. +++++++.||+ ..++... +..+.....+.... .............+.|+.+|...|
T Consensus 107 l~~~~~~-~~~~~i~~sS~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~y~~~k~~~e 172 (338)
T d1orra_ 107 LEAVRQY-NSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDK-------------PNGYDESTQLDFHSPYGCSKGAAD 172 (338)
T ss_dssp HHHHHHH-CTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTC-------------TTCBCTTSCCCCCHHHHHHHHHHH
T ss_pred HHhhhcc-ccccccccccccccccccccccccccccccccccc-------------ccCcccCCccccccccccccchhh
Confidence 9999997 66666555555 3333222 11111110000000 000000011122378999999999
Q ss_pred HHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHH-----hcCcceeecCCCCcccCcccHHHHHHHH
Q psy17528 282 DLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGA-----GTGLIRVVQTDPNISMDVVPGDRVINAM 354 (366)
Q Consensus 282 ~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~l~~~~~~~~~~v~vdDva~ai 354 (366)
.++.... ++....++|++.+||+........ .....++..+ ..+....++++|...++|+|++|+++++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~r~~~~v~D~~~~~ 248 (338)
T d1orra_ 173 QYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQ----GWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVLHAEDMISLY 248 (338)
T ss_dssp HHHHHHHHHHCCEEEEEEECCEECTTCCCBTTB----CHHHHHHHHHHHHHTTCCCCEEEESSSCCEEECEEHHHHHHHH
T ss_pred hhhhhhhhccCcccccccccceeeccccccccc----cccchhhHHHHHHHhccCCceEEeCCCceeEeeecccchhhHH
Confidence 9988776 789999999999998765432111 1122333332 2466778889999999999999999999
Q ss_pred HHHHHhhh
Q psy17528 355 AALAWYFL 362 (366)
Q Consensus 355 ~~~~~~~~ 362 (366)
+.+++...
T Consensus 249 ~~~l~~~~ 256 (338)
T d1orra_ 249 FTALANVS 256 (338)
T ss_dssp HHHHHTHH
T ss_pred HHHHhccc
Confidence 99987653
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.2e-23 Score=187.95 Aligned_cols=197 Identities=16% Similarity=0.166 Sum_probs=151.3
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
|.++||+||||||+||++++++|+++| ++|.+++|+.++.
T Consensus 1 m~~kkIlV~GatG~iG~~v~~~Ll~~g---~~V~~~~R~~~~~------------------------------------- 40 (205)
T d1hdoa_ 1 MAVKKIAIFGATGQTGLTTLAQAVQAG---YEVTVLVRDSSRL------------------------------------- 40 (205)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCGGGS-------------------------------------
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCc---CEEEEEEcChhhc-------------------------------------
Confidence 578999999999999999999999998 8999999986432
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTIL 205 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll 205 (366)
.......++++.+|+.+.+ .+.+++.++|+|||++|....... .+.+..++++++
T Consensus 41 ---------------~~~~~~~~~~~~gD~~d~~------~l~~al~~~d~vi~~~g~~~~~~~----~~~~~~~~~~l~ 95 (205)
T d1hdoa_ 41 ---------------PSEGPRPAHVVVGDVLQAA------DVDKTVAGQDAVIVLLGTRNDLSP----TTVMSEGARNIV 95 (205)
T ss_dssp ---------------CSSSCCCSEEEESCTTSHH------HHHHHHTTCSEEEECCCCTTCCSC----CCHHHHHHHHHH
T ss_pred ---------------ccccccccccccccccchh------hHHHHhcCCCEEEEEeccCCchhh----hhhhHHHHHHHH
Confidence 1112367899999999987 899999999999999986432111 234667889999
Q ss_pred HHHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHH
Q psy17528 206 ALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVR 285 (366)
Q Consensus 206 ~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~ 285 (366)
+++++. ++++||++||..++.+.... +.. ...|...|..+|++++
T Consensus 96 ~aa~~~-~v~r~i~~ss~~~~~~~~~~-----~~~-----------------------------~~~~~~~~~~~e~~l~ 140 (205)
T d1hdoa_ 96 AAMKAH-GVDKVVACTSAFLLWDPTKV-----PPR-----------------------------LQAVTDDHIRMHKVLR 140 (205)
T ss_dssp HHHHHH-TCCEEEEECCGGGTSCTTCS-----CGG-----------------------------GHHHHHHHHHHHHHHH
T ss_pred HHHHhc-CCCeEEEEeeeeccCCCccc-----ccc-----------------------------ccccchHHHHHHHHHH
Confidence 999987 89999999998776443211 000 1468889999999988
Q ss_pred HhcCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhhhhcC
Q psy17528 286 QVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYFLFSC 365 (366)
Q Consensus 286 ~~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~~~~ 365 (366)
+. +++++++||+.+++.... +. ..+..++.....+++++|+|++++.+++++...|
T Consensus 141 ~~--~~~~tiirp~~~~~~~~~---------------------~~-~~~~~~~~~~~~~i~~~DvA~~~~~~l~~~~~~g 196 (205)
T d1hdoa_ 141 ES--GLKYVAVMPPHIGDQPLT---------------------GA-YTVTLDGRGPSRVISKHDLGHFMLRCLTTDEYDG 196 (205)
T ss_dssp HT--CSEEEEECCSEEECCCCC---------------------SC-CEEESSSCSSCSEEEHHHHHHHHHHTTSCSTTTT
T ss_pred hc--CCceEEEecceecCCCCc---------------------cc-EEEeeCCCCCCCcCCHHHHHHHHHHHhCCCCCCC
Confidence 75 799999999999864221 11 1233356667789999999999999998887655
Q ss_pred C
Q psy17528 366 R 366 (366)
Q Consensus 366 ~ 366 (366)
+
T Consensus 197 ~ 197 (205)
T d1hdoa_ 197 H 197 (205)
T ss_dssp C
T ss_pred E
Confidence 3
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.87 E-value=3.7e-22 Score=178.31 Aligned_cols=191 Identities=18% Similarity=0.155 Sum_probs=134.0
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
.|+|||||||||||++++++|+++| ...+|+++.|+....
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~-~~~~v~~~~r~~~~~--------------------------------------- 41 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEP-TLAKVIAPARKALAE--------------------------------------- 41 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCT-TCCEEECCBSSCCCC---------------------------------------
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCC-CeEEEEEEeCCchhh---------------------------------------
Confidence 4899999999999999999999997 334788888864321
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccC-hhhhHHHHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVR-FDEHIRTAYNINVKGTQTILA 206 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~-~~~~~~~~~~~nv~~~~~ll~ 206 (366)
.+.+.....|+.+ ....+...+|.|||++|... .......+.+.|+.++.++++
T Consensus 42 -----------------~~~~~~~~~d~~~--------~~~~~~~~~d~vi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (212)
T d2a35a1 42 -----------------HPRLDNPVGPLAE--------LLPQLDGSIDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGK 96 (212)
T ss_dssp -----------------CTTEECCBSCHHH--------HGGGCCSCCSEEEECCCCCHHHHSSHHHHHHHHTHHHHHHHH
T ss_pred -----------------cccccccccchhh--------hhhccccchheeeeeeeeeccccccccccccchhhhhhhccc
Confidence 1233333333322 11122346899999998653 233456788899999999999
Q ss_pred HHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHH
Q psy17528 207 LAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQ 286 (366)
Q Consensus 207 ~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~ 286 (366)
++++. ++++|+++||..++... .+.|+.+|..+|+.+++
T Consensus 97 ~a~~~-~v~~~i~~Ss~~~~~~~----------------------------------------~~~y~~~K~~~E~~l~~ 135 (212)
T d2a35a1 97 RALEM-GARHYLVVSALGADAKS----------------------------------------SIFYNRVKGELEQALQE 135 (212)
T ss_dssp HHHHT-TCCEEEEECCTTCCTTC----------------------------------------SSHHHHHHHHHHHHHTT
T ss_pred ccccc-ccccccccccccccccc----------------------------------------ccchhHHHHHHhhhccc
Confidence 99986 89999999998765322 17899999999999987
Q ss_pred hcCCC-CEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 287 VGHEL-PICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 287 ~~~gl-~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
.. + +++|+||+.|||+...+.... ........+. ...+.+||++|+|+|++.+++++.
T Consensus 136 ~~--~~~~~I~Rp~~v~G~~~~~~~~~-------------~~~~~~~~~~---~~~~~~i~v~DvA~ai~~~~~~~~ 194 (212)
T d2a35a1 136 QG--WPQLTIARPSLLFGPREEFRLAE-------------ILAAPIARIL---PGKYHGIEACDLARALWRLALEEG 194 (212)
T ss_dssp SC--CSEEEEEECCSEESTTSCEEGGG-------------GTTCCCC-------CHHHHHHHHHHHHHHHHHHTCCC
T ss_pred cc--cccceeeCCcceeCCcccccHHH-------------HHHHHHhhcc---CCCCcEEEHHHHHHHHHHHHcCCC
Confidence 63 4 589999999999876431110 0111111111 123456999999999999987754
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.87 E-value=3.6e-21 Score=176.99 Aligned_cols=193 Identities=19% Similarity=0.127 Sum_probs=149.5
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
|+|||||||||||++|+++|.+.| +.|++++|+.
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g---~~Vi~~~r~~------------------------------------------- 35 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKN---VEVIPTDVQD------------------------------------------- 35 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSS---EEEEEECTTT-------------------------------------------
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC---CEEEEeechh-------------------------------------------
Confidence 469999999999999999999998 8888888752
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccChh---hhHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRFD---EHIRTAYNINVKGTQT 203 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~~---~~~~~~~~~nv~~~~~ 203 (366)
+|+.|.. .+.++++ ++|+|||+|+..... .........|+.....
T Consensus 36 ------------------------~D~~d~~------~~~~~l~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~ 85 (281)
T d1vl0a_ 36 ------------------------LDITNVL------AVNKFFNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIGPKN 85 (281)
T ss_dssp ------------------------CCTTCHH------HHHHHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHH
T ss_pred ------------------------ccCCCHH------HHHHHHHHcCCCEEEeeccccccccccccchhhcccccccccc
Confidence 3566655 6777776 679999999976543 3446677888888888
Q ss_pred HHHHHHhcCCCcEEEEeeCcceecCc--cccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHH
Q psy17528 204 ILALAKRMKGLKSFVHVSTAYCNCDR--KFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAE 281 (366)
Q Consensus 204 ll~~a~~~~~~~~~v~iSS~~~~~~~--~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E 281 (366)
+++.+... ...+++.||..+++.. .+..|...+.|. ..|+.+|...|
T Consensus 86 ~~~~~~~~--~~~~~~~ss~~v~~~~~~~~~~e~~~~~~~-----------------------------~~~~~~k~~~e 134 (281)
T d1vl0a_ 86 LAAAAYSV--GAEIVQISTDYVFDGEAKEPITEFDEVNPQ-----------------------------SAYGKTKLEGE 134 (281)
T ss_dssp HHHHHHHH--TCEEEEEEEGGGSCSCCSSCBCTTSCCCCC-----------------------------SHHHHHHHHHH
T ss_pred cccccccc--cccccccccceeeeccccccccccccccch-----------------------------hhhhhhhhHHH
Confidence 88887764 4477888888777543 345565555443 78999999999
Q ss_pred HHHHHhcCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhh
Q psy17528 282 DLVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 282 ~~l~~~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
+.+++. +.+++++||++|||++... ...++..+..+....+.+ +..++++|++|+++++..++++.
T Consensus 135 ~~~~~~--~~~~~i~R~~~vyG~~~~~----------~~~~~~~~~~~~~~~~~~--~~~~~~i~v~D~~~~~~~~~~~~ 200 (281)
T d1vl0a_ 135 NFVKAL--NPKYYIVRTAWLYGDGNNF----------VKTMINLGKTHDELKVVH--DQVGTPTSTVDLARVVLKVIDEK 200 (281)
T ss_dssp HHHHHH--CSSEEEEEECSEESSSSCH----------HHHHHHHHHHCSEEEEES--SCEECCEEHHHHHHHHHHHHHHT
T ss_pred HHHHHh--CCCccccceeEEeCCCccc----------ccchhhhhccCCceeecC--Cceeccchhhhhhhhhhhhhhhc
Confidence 999887 5899999999999997531 234556666666666553 57899999999999999999876
Q ss_pred h
Q psy17528 362 L 362 (366)
Q Consensus 362 ~ 362 (366)
.
T Consensus 201 ~ 201 (281)
T d1vl0a_ 201 N 201 (281)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=99.85 E-value=8.7e-21 Score=175.88 Aligned_cols=213 Identities=12% Similarity=0.038 Sum_probs=151.4
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
+.+||||||||||||++|+++|+++| +.|++++|+........ .... ..+
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G---~~V~~~~R~~~~~~~~~-~~~~------~~~-------------------- 51 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLG---HPTYVLFRPEVVSNIDK-VQML------LYF-------------------- 51 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTT---CCEEEECCSCCSSCHHH-HHHH------HHH--------------------
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCC---CEEEEEECCCcccchhH-HHHH------hhh--------------------
Confidence 35679999999999999999999998 88999999876543321 1110 001
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILA 206 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll~ 206 (366)
....++++.+|+.+.+ .+...+.++++++++++.... ..|..+...+++
T Consensus 52 -----------------~~~~v~~v~~d~~d~~------~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~ 100 (312)
T d1qyda_ 52 -----------------KQLGAKLIEASLDDHQ------RLVDALKQVDVVISALAGGVL--------SHHILEQLKLVE 100 (312)
T ss_dssp -----------------HTTTCEEECCCSSCHH------HHHHHHTTCSEEEECCCCSSS--------STTTTTHHHHHH
T ss_pred -----------------ccCCcEEEEeecccch------hhhhhccCcchhhhhhhhccc--------ccchhhhhHHHH
Confidence 1257889999999977 788888999999999886432 234455667778
Q ss_pred HHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHH
Q psy17528 207 LAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQ 286 (366)
Q Consensus 207 ~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~ 286 (366)
++.+. ...++++.||.++..... .... .....|...|...++...+
T Consensus 101 ~a~~~-~~~~~v~~Ss~g~~~~~~----~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 146 (312)
T d1qyda_ 101 AIKEA-GNIKRFLPSEFGMDPDIM----EHAL-----------------------------QPGSITFIDKRKVRRAIEA 146 (312)
T ss_dssp HHHHS-CCCSEEECSCCSSCTTSC----CCCC-----------------------------SSTTHHHHHHHHHHHHHHH
T ss_pred HHHHh-cCCcEEEEeeccccCCCc----cccc-----------------------------chhhhhhHHHHHHHHhhcc
Confidence 88876 556777788765443221 1111 1126788888888887766
Q ss_pred hcCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhhhhcC
Q psy17528 287 VGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYFLFSC 365 (366)
Q Consensus 287 ~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~~~~ 365 (366)
. +++++++||+.+||+.......+.... ...+....++++++..++|++++|+|++++.++..+...+
T Consensus 147 ~--~~~~~i~r~~~~~g~~~~~~~~~~~~~---------~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~ 214 (312)
T d1qyda_ 147 A--SIPYTYVSSNMFAGYFAGSLAQLDGHM---------MPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQTLN 214 (312)
T ss_dssp T--TCCBCEEECCEEHHHHTTTSSCTTCCS---------SCCSSEECCBTTSCSEEEEECHHHHHHHHHHHTTCGGGSS
T ss_pred c--ccceEEeccceeecCCccchhhHHHHh---------hhcccccccccccccccceeeHHHHHHHHHHHhcCccccC
Confidence 5 799999999999997654433222111 1244556677889999999999999999999998876543
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.84 E-value=7e-21 Score=168.97 Aligned_cols=204 Identities=15% Similarity=0.126 Sum_probs=144.0
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+++|||||||||||++++++|++.|+. ..|+++.|+++.. ..
T Consensus 3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~-v~v~~~~R~~~~~------~~------------------------------- 44 (252)
T d2q46a1 3 LPTVLVTGASGRTGQIVYKKLKEGSDK-FVAKGLVRSAQGK------EK------------------------------- 44 (252)
T ss_dssp CCEEEEESTTSTTHHHHHHHHHHTTTT-CEEEEEESCHHHH------HH-------------------------------
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCc-EEEEEEcCCHHHH------Hh-------------------------------
Confidence 689999999999999999999999854 3677788864210 00
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh----------------hhHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD----------------EHIR 191 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~----------------~~~~ 191 (366)
....+.++.+|+.+.+ .+.++++++|.|||+++..... ....
T Consensus 45 ----------------~~~~~~~~~~d~~~~~------~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (252)
T d2q46a1 45 ----------------IGGEADVFIGDITDAD------SINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQ 102 (252)
T ss_dssp ----------------TTCCTTEEECCTTSHH------HHHHHHTTCSEEEECCCCCCEECTTCCTTSCCCCCEECCTTC
T ss_pred ----------------ccCCcEEEEeeecccc------ccccccccceeeEEEEeeccccccccchhhhhhcccccccch
Confidence 1246778999999987 8889999999999999864211 1223
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCc
Q psy17528 192 TAYNINVKGTQTILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPN 271 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (366)
....+|+.++.+++..+... ..+++.+.|+...+....+... ....
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~---------------------------------~~~~ 148 (252)
T d2q46a1 103 YPEQVDWIGQKNQIDAAKVA-GVKHIVVVGSMGGTNPDHPLNK---------------------------------LGNG 148 (252)
T ss_dssp SHHHHTTHHHHHHHHHHHHH-TCSEEEEEEETTTTCTTCGGGG---------------------------------GGGC
T ss_pred hhhccccccceeeccccccc-cccccccccccccCCCCccccc---------------------------------cccc
Confidence 45677999999999988876 6778888887655432211100 0015
Q ss_pred hHHHHHHHHHHHHHHhcCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHH
Q psy17528 272 SYTLTKATAEDLVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVI 351 (366)
Q Consensus 272 ~Y~~sK~~~E~~l~~~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva 351 (366)
.|...+...+...... +++++++||+++||+.......+.. ....+ ......++|++|+|
T Consensus 149 ~~~~~~~~~~~~~~~~--~~~~~ilRp~~v~g~~~~~~~~~~~---------------~~~~~---~~~~~~~i~~~Dva 208 (252)
T d2q46a1 149 NILVWKRKAEQYLADS--GTPYTIIRAGGLLDKEGGVRELLVG---------------KDDEL---LQTDTKTVPRADVA 208 (252)
T ss_dssp CHHHHHHHHHHHHHHS--SSCEEEEEECEEECSCTTSSCEEEE---------------STTGG---GGSSCCEEEHHHHH
T ss_pred chhhhhhhhhhhhhcc--cccceeecceEEECCCcchhhhhhc---------------cCccc---ccCCCCeEEHHHHH
Confidence 5667777766665554 7999999999999997653322211 11111 12346799999999
Q ss_pred HHHHHHHHhhhhcC
Q psy17528 352 NAMAALAWYFLFSC 365 (366)
Q Consensus 352 ~ai~~~~~~~~~~~ 365 (366)
++++.+++++...|
T Consensus 209 ~a~~~~l~~~~~~g 222 (252)
T d2q46a1 209 EVCIQALLFEEAKN 222 (252)
T ss_dssp HHHHHHTTCGGGTT
T ss_pred HHHHHHhCCccccC
Confidence 99999998876554
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=99.83 E-value=2.4e-20 Score=171.31 Aligned_cols=206 Identities=15% Similarity=0.143 Sum_probs=146.5
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
.|+|||||||||||++++++|++.| ++|++++|+.......++.... ..+
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G---~~V~~l~R~~~~~~~~~~~~~~------~~~--------------------- 52 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLG---HPTFLLVRESTASSNSEKAQLL------ESF--------------------- 52 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTT---CCEEEECCCCCTTTTHHHHHHH------HHH---------------------
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC---CeEEEEECCCccccchhHHHHH------Hhh---------------------
Confidence 5789999999999999999999999 8899999987654332222111 011
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILAL 207 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll~~ 207 (366)
....++++.+|+.+.. .....+.+++.|+|+++... ..++..++++
T Consensus 53 ----------------~~~~~~~~~~d~~~~~------~~~~~~~~~~~vi~~~~~~~------------~~~~~~~~~a 98 (307)
T d1qyca_ 53 ----------------KASGANIVHGSIDDHA------SLVEAVKNVDVVISTVGSLQ------------IESQVNIIKA 98 (307)
T ss_dssp ----------------HTTTCEEECCCTTCHH------HHHHHHHTCSEEEECCCGGG------------SGGGHHHHHH
T ss_pred ----------------ccCCcEEEEeecccch------hhhhhhhhceeeeecccccc------------cchhhHHHHH
Confidence 1246789999999876 67788889999999988643 2233456666
Q ss_pred HHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHHh
Q psy17528 208 AKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQV 287 (366)
Q Consensus 208 a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~ 287 (366)
+... +.+++++.|+.......... .. ....+...+...+..+.+.
T Consensus 99 ~~~~-~~~~~~~~s~~~~~~~~~~~-----~~-----------------------------~~~~~~~~~~~~~~~~~~~ 143 (307)
T d1qyca_ 99 IKEV-GTVKRFFPSEFGNDVDNVHA-----VE-----------------------------PAKSVFEVKAKVRRAIEAE 143 (307)
T ss_dssp HHHH-CCCSEEECSCCSSCTTSCCC-----CT-----------------------------THHHHHHHHHHHHHHHHHH
T ss_pred HHHh-ccccceeeeccccccccccc-----cc-----------------------------cccccccccccccchhhcc
Confidence 6665 66788888876443221110 00 0145777778888877776
Q ss_pred cCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhhhhc
Q psy17528 288 GHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYFLFS 364 (366)
Q Consensus 288 ~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~~~ 364 (366)
+++++++||+++||+...+...+ .....++....+++.++..++|+|++|+|++++.++..+...
T Consensus 144 --~~~~~i~r~~~v~g~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~l~~~~~~ 208 (307)
T d1qyca_ 144 --GIPYTYVSSNCFAGYFLRSLAQA----------GLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPRTL 208 (307)
T ss_dssp --TCCBEEEECCEEHHHHTTTTTCT----------TCSSCCSSEEEEETTSCCEEEEECHHHHHHHHHTTSSCGGGT
T ss_pred --CCCceecccceecCCCccchhhh----------hhhhhhcccceeeecccccccCCcHHHHHHHHHHHhcChhhc
Confidence 69999999999999865443222 122345556667788899999999999999999999876543
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=4.4e-20 Score=170.66 Aligned_cols=157 Identities=18% Similarity=0.106 Sum_probs=104.3
Q ss_pred hCcCEEEEcCcccChh-hhHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCcceecCcc--ccccccCCCCCChHHHHH
Q psy17528 172 SQTTIIFHIAATVRFD-EHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTAYCNCDRK--FIAEKFYPPVFTAEELSA 248 (366)
Q Consensus 172 ~~~d~Vih~a~~~~~~-~~~~~~~~~nv~~~~~ll~~a~~~~~~~~~v~iSS~~~~~~~~--~~~e~~~~~p~~~~~~~~ 248 (366)
..+++|+|+|+..... .........|+.++..+++++... ++ ++++.||+.++.... ...+.....|
T Consensus 67 ~~~~~i~~~aa~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~i-~~v~~ss~~~~~~~~~~~~~~~~~~~~-------- 136 (307)
T d1eq2a_ 67 GDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLER-EI-PFLYASSAATYGGRTSDFIESREYEKP-------- 136 (307)
T ss_dssp SSCCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHH-TC-CEEEEEEGGGGTTCCSCBCSSGGGCCC--------
T ss_pred cchhhhhhhcccccccccccccccccccccccccccccccc-cc-ccccccccccccccccccccccccccc--------
Confidence 3679999999865433 344567788899999999998876 55 466777766654332 2223322222
Q ss_pred HhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHHhc--CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHH
Q psy17528 249 LVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVG--HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGA 326 (366)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~--~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~ 326 (366)
.+.|+.+|..+|.+++.+. .+++++++||++||||+......+. .....++..+
T Consensus 137 ---------------------~~~Y~~~K~~~e~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~~~---~~~~~~~~~~ 192 (307)
T d1eq2a_ 137 ---------------------LNVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMA---SVAFHLNTQL 192 (307)
T ss_dssp ---------------------SSHHHHHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCGGGGGGS---CHHHHHHHHH
T ss_pred ---------------------ccccccccchhhhhccccccccccccccccceeEeecccccccccc---cccccccccc
Confidence 2789999999999999987 8999999999999999775321111 1224455556
Q ss_pred hcCccee-ecCCCCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 327 GTGLIRV-VQTDPNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 327 ~~g~~~~-l~~~~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
..+.... ..+++...++|+|++|+++++..++....
T Consensus 193 ~~~~~~~~~~g~~~~~r~~~~v~d~~~~~~~~~~~~~ 229 (307)
T d1eq2a_ 193 NNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGV 229 (307)
T ss_dssp HC-------------CBCEEEHHHHHHHHHHHHHHCC
T ss_pred ccccceeeecCccceeeeeeecccHHHHHHHHhhhcc
Confidence 6665444 35678889999999999999998887643
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=99.81 E-value=5.1e-19 Score=162.98 Aligned_cols=195 Identities=19% Similarity=0.136 Sum_probs=138.7
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
|+|||||||||||++|++.|.+.| + ++.+.+....
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g---~-~v~~~~~~~~----------------------------------------- 35 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVG---N-LIALDVHSKE----------------------------------------- 35 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTS---E-EEEECTTCSS-----------------------------------------
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC---C-EEEEECCCcc-----------------------------------------
Confidence 579999999999999999999886 4 4455554210
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--CcCEEEEcCcccChh---hhHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--QTTIIFHIAATVRFD---EHIRTAYNINVKGTQT 203 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--~~d~Vih~a~~~~~~---~~~~~~~~~nv~~~~~ 203 (366)
+.+|+.+.+ .+.++++ ++|+|||+||..... ......+..|+.++..
T Consensus 36 ----------------------~~~Dl~~~~------~~~~~i~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~n~~~~~~ 87 (298)
T d1n2sa_ 36 ----------------------FCGDFSNPK------GVAETVRKLRPDVIVNAAAHTAVDKAESEPELAQLLNATSVEA 87 (298)
T ss_dssp ----------------------SCCCTTCHH------HHHHHHHHHCCSEEEECCCCCCHHHHTTCHHHHHHHHTHHHHH
T ss_pred ----------------------ccCcCCCHH------HHHHHHHHcCCCEEEEecccccccccccCcccccccccccccc
Confidence 246888766 7777776 569999999976543 3456788999999999
Q ss_pred HHHHHHhcCCCcEEEEeeCcceecC--ccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHH
Q psy17528 204 ILALAKRMKGLKSFVHVSTAYCNCD--RKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAE 281 (366)
Q Consensus 204 ll~~a~~~~~~~~~v~iSS~~~~~~--~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E 281 (366)
+++++.+. + .+++++||+.++.. ..+..|...+.|. +.|+.+|..+|
T Consensus 88 l~~~~~~~-~-~~~~~~ss~~~~~~~~~~~~~E~~~~~p~-----------------------------~~y~~~k~~~e 136 (298)
T d1n2sa_ 88 IAKAANET-G-AWVVHYSTDYVFPGTGDIPWQETDATSPL-----------------------------NVYGKTKLAGE 136 (298)
T ss_dssp HHHHHTTT-T-CEEEEEEEGGGSCCCTTCCBCTTSCCCCS-----------------------------SHHHHHHHHHH
T ss_pred chhhhhcc-c-cccccccccccccCCCCCCCccccccCCC-----------------------------chHhhhhhhhh
Confidence 99999875 3 47888888876653 3356666655554 78999999999
Q ss_pred HHHHHhcCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHh
Q psy17528 282 DLVRQVGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWY 360 (366)
Q Consensus 282 ~~l~~~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~ 360 (366)
..+.... ....++|++..|+..... ....+...+..+....+. +....+++|++|+++++..++..
T Consensus 137 ~~~~~~~--~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~~~~~~~i~~ 202 (298)
T d1n2sa_ 137 KALQDNC--PKHLIFRTSWVYAGKGNN---------FAKTMLRLAKERQTLSVI--NDQYGAPTGAELLADCTAHAIRV 202 (298)
T ss_dssp HHHHHHC--SSEEEEEECSEECSSSCC---------HHHHHHHHHHHCSEEEEE--CSCEECCEEHHHHHHHHHHHHHH
T ss_pred hhHHhhh--cccccccccceeeccCCc---------cchhhhhhhcccceeecc--cceeecccccchHHHHHHHHHhh
Confidence 9998875 455666666666543221 112223333344433333 45678999999999999887754
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.71 E-value=1.8e-16 Score=144.96 Aligned_cols=196 Identities=14% Similarity=0.166 Sum_probs=141.0
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
..+++|++|||||++.||.+++++|++.| .+|++.+|+...
T Consensus 3 psl~gK~~lITGas~GIG~aia~~la~~G---a~V~~~~r~~~~------------------------------------ 43 (237)
T d1uzma1 3 PPFVSRSVLVTGGNRGIGLAIAQRLAADG---HKVAVTHRGSGA------------------------------------ 43 (237)
T ss_dssp CCCCCCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESSSCC------------------------------------
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCcch------------------------------------
Confidence 45789999999999999999999999999 899999997542
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhh
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEH 189 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~ 189 (366)
..++..+.+|+++++ ++.++++ .+|++|||||... ..+.
T Consensus 44 ---------------------~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~iDiLVnnAG~~~~~~~~~~~~e~ 96 (237)
T d1uzma1 44 ---------------------PKGLFGVEVDVTDSD------AVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEK 96 (237)
T ss_dssp ---------------------CTTSEEEECCTTCHH------HHHHHHHHHHHHHSSCSEEEEECSCCC-----CCCHHH
T ss_pred ---------------------hcCceEEEEecCCHH------HHHHHHHHHHHhcCCceEEEeeecccccccHhhCCHHH
Confidence 135667899999986 5655553 6899999999753 2356
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 190 IRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 190 ~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
++..+++|+.++..+.+.+.+. .+..++|++||.......
T Consensus 97 ~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Iv~isS~~~~~~~------------------------------------- 139 (237)
T d1uzma1 97 FEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGI------------------------------------- 139 (237)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-----------------------------------------
T ss_pred HHHHHHhhhhhhhhhhhhhhhcccccCCCceEEEcchhhccCC-------------------------------------
Confidence 7889999999988776654321 355699999998654221
Q ss_pred CCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcc
Q psy17528 267 GGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNIS 341 (366)
Q Consensus 267 ~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~ 341 (366)
+....|+.+|...+.+.+... +|+.+..|.||.|..+.... +. .......... ...
T Consensus 140 -~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~-------~~--~~~~~~~~~~---------~pl 200 (237)
T d1uzma1 140 -GNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRA-------LD--ERIQQGALQF---------IPA 200 (237)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHH-------SC--HHHHHHHGGG---------CTT
T ss_pred -cccHHHHHHHHHHHHHHHHHHhhhhcCCceeeeeeeCcCCChhhhc-------cC--HHHHHHHHhc---------CCC
Confidence 112689999999998887655 78999999999987642211 11 1111111111 112
Q ss_pred cCcccHHHHHHHHHHHHHhh
Q psy17528 342 MDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 342 ~~~v~vdDva~ai~~~~~~~ 361 (366)
.-+...+|+|+++++++...
T Consensus 201 ~R~~~pedvA~~v~fL~S~~ 220 (237)
T d1uzma1 201 KRVGTPAEVAGVVSFLASED 220 (237)
T ss_dssp CSCBCHHHHHHHHHHHHSGG
T ss_pred CCCcCHHHHHHHHHHHhCch
Confidence 34678899999999988544
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.70 E-value=7.7e-16 Score=141.44 Aligned_cols=198 Identities=13% Similarity=0.094 Sum_probs=143.8
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++|+++||||++.||.++++.|++.| .+|++.+|++.. .+.+.+.
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G---~~V~~~~r~~~~---~~~~~~~--------------------------- 49 (244)
T d1nffa_ 3 RLTGKVALVSGGARGMGASHVRAMVAEG---AKVVFGDILDEE---GKAMAAE--------------------------- 49 (244)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHH---------------------------
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHH---HHHHHHH---------------------------
Confidence 5789999999999999999999999999 899999997421 1111111
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHI 190 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~ 190 (366)
...++.++.+|+++++ ++.++++ .+|++|||||... ....+
T Consensus 50 -------------------~~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~idilinnAG~~~~~~~~~~~~~~~ 104 (244)
T d1nffa_ 50 -------------------LADAARYVHLDVTQPA------QWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEW 104 (244)
T ss_dssp -------------------TGGGEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHH
T ss_pred -------------------hhCcceEEEeecCCHH------HHHHHHHHHHHHhCCCeEEEECCcccCCCchhhCCHHHH
Confidence 1246778999999986 6665553 6899999999753 23567
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 191 RTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
+..+++|+.++..+.+.+.+. ++..++|++||........
T Consensus 105 ~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~------------------------------------- 147 (244)
T d1nffa_ 105 QRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTV------------------------------------- 147 (244)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT-------------------------------------
T ss_pred hHHhhcccchhhHHHHHHHhHHHhcCcceEEeccccccccccc-------------------------------------
Confidence 889999999988887755321 2446899999987642211
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
....|+.+|...+.+.+... +|++++.|-||.|-.+.....+... ......
T Consensus 148 -~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~-----------------------~~~pl~ 203 (244)
T d1nffa_ 148 -ACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWVPEDI-----------------------FQTALG 203 (244)
T ss_dssp -TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGTTSCTTC-----------------------SCCSSS
T ss_pred -cccchhhHHHHHHHHHHHHHHHhcccCEEEEEEeeCCccChhHhhhhHHH-----------------------Hhcccc
Confidence 11689999999999887766 7899999999998765432211100 011223
Q ss_pred CcccHHHHHHHHHHHHHhh
Q psy17528 343 DVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~ 361 (366)
-+...+|+|+++++++...
T Consensus 204 R~~~p~diA~~v~fL~s~~ 222 (244)
T d1nffa_ 204 RAAEPVEVSNLVVYLASDE 222 (244)
T ss_dssp SCBCHHHHHHHHHHHHSGG
T ss_pred CCCCHHHHHHHHHHHhChh
Confidence 4778999999999988543
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=99.68 E-value=4.6e-16 Score=142.96 Aligned_cols=207 Identities=16% Similarity=0.108 Sum_probs=140.1
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++|+++||||++.||.++++.|++.| .+|++.+|++.. ..+...+
T Consensus 2 rL~gKvalVTGas~GIG~aia~~la~~G---a~V~~~~~~~~~--~~~~~~~---------------------------- 48 (247)
T d2ew8a1 2 RLKDKLAVITGGANGIGRAIAERFAVEG---ADIAIADLVPAP--EAEAAIR---------------------------- 48 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSCCH--HHHHHHH----------------------------
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCchH--HHHHHHH----------------------------
Confidence 4789999999999999999999999999 899999997542 1111111
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHI 190 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~ 190 (366)
....++.++.+|+++.+ ++..+++ .+|++|||||... ..+.+
T Consensus 49 ------------------~~g~~~~~~~~Dvs~~~------~v~~~~~~~~~~~G~iDilVnnAG~~~~~~~~~~~~e~~ 104 (247)
T d2ew8a1 49 ------------------NLGRRVLTVKCDVSQPG------DVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQW 104 (247)
T ss_dssp ------------------HTTCCEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHH
T ss_pred ------------------HcCCcEEEEEeeCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChHhCCHHHh
Confidence 12357889999999987 6666553 6899999999753 23567
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 191 RTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
+..+++|+.++..+.+.+.+. .+..++|++||.......
T Consensus 105 ~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~-------------------------------------- 146 (247)
T d2ew8a1 105 KKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKI-------------------------------------- 146 (247)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCC--------------------------------------
T ss_pred hhhheeehhhhhHHHHHHHhHHHhcCCCCccccccchhcccC--------------------------------------
Confidence 889999999988887765431 245689999998654221
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
+....|+.+|...+.+.+... +|++++.|.||.|-.+....... . ........ ......
T Consensus 147 ~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~-----~----~~~~~~~~-------~~~~l~ 210 (247)
T d2ew8a1 147 EAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASAL-----S----AMFDVLPN-------MLQAIP 210 (247)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC---------------------------C-------TTSSSC
T ss_pred cccccchhhhccHHHHHHHHHHHhcccCeEEEEEeeCCCCCcccccccc-----c----hhHHHHHH-------HhccCC
Confidence 112679999999888887765 78999999999997764321100 0 00000000 011122
Q ss_pred CcccHHHHHHHHHHHHHhhh
Q psy17528 343 DVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~~ 362 (366)
-+...+|+|++++.++...+
T Consensus 211 r~~~pedvA~~v~fL~S~~s 230 (247)
T d2ew8a1 211 RLQVPLDLTGAAAFLASDDA 230 (247)
T ss_dssp SCCCTHHHHHHHHHHTSGGG
T ss_pred CCCCHHHHHHHHHHHhCchh
Confidence 35678999999999876443
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=99.68 E-value=1.8e-15 Score=139.76 Aligned_cols=164 Identities=15% Similarity=0.146 Sum_probs=125.0
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++|+++||||++.||.+++++|++.| .+|++.+|+.. ++.+..+
T Consensus 2 dL~gK~alVTGas~GIG~aia~~la~~G---a~V~~~~r~~~------~~~~~~~------------------------- 47 (254)
T d1hdca_ 2 DLSGKTVIITGGARGLGAEAARQAVAAG---ARVVLADVLDE------EGAATAR------------------------- 47 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHHHH-------------------------
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCC---CEEEEEECCHH------HHHHHHH-------------------------
Confidence 4789999999999999999999999999 89999999742 2222111
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHI 190 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~ 190 (366)
....++.++.+|+++.+ ++.++++ .+|++|||||... ....+
T Consensus 48 ------------------~~~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~ 103 (254)
T d1hdca_ 48 ------------------ELGDAARYQHLDVTIEE------DWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERF 103 (254)
T ss_dssp ------------------TTGGGEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCSCGGGSCHHHH
T ss_pred ------------------HhCCceEEEEcccCCHH------HHHHHHHHHHHHcCCccEEEecCcccccccccccccccc
Confidence 11356789999999986 6666553 6899999999753 23467
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 191 RTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
+..+++|+.++..+.+.+.+. .+..++|++||.......
T Consensus 104 ~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~~~~~~~-------------------------------------- 145 (254)
T d1hdca_ 104 RKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGL-------------------------------------- 145 (254)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC--------------------------------------
T ss_pred chhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccchhcccc--------------------------------------
Confidence 789999999988887765431 245699999998654221
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccC
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPT 304 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~ 304 (366)
+....|+.+|...+.+.+... +|+++..|.||.|..+
T Consensus 146 ~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~v~T~ 187 (254)
T d1hdca_ 146 ALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTP 187 (254)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeCcccCc
Confidence 112689999999998887766 7899999999998653
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=6.3e-16 Score=141.76 Aligned_cols=203 Identities=15% Similarity=0.183 Sum_probs=143.5
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|+++||||++.||.+++++|++.| ++|++.+|+++. .+.+.+.+
T Consensus 2 l~gK~alITGas~GIG~a~a~~l~~~G---~~Vv~~~r~~~~---l~~~~~~~--------------------------- 48 (243)
T d1q7ba_ 2 FEGKIALVTGASRGIGRAIAETLAARG---AKVIGTATSENG---AQAISDYL--------------------------- 48 (243)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTT---CEEEEEESSHHH---HHHHHHHH---------------------------
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcC---CEEEEEeCCHHH---HHHHHHHh---------------------------
Confidence 679999999999999999999999999 899999997421 22222211
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
..+...+.+|+++++ ++.++++ ++|++|||||... ....++
T Consensus 49 -------------------~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~ 103 (243)
T d1q7ba_ 49 -------------------GANGKGLMLNVTDPA------SIESVLEKIRAEFGEVDILVNNAGITRDNLLMRMKDEEWN 103 (243)
T ss_dssp -------------------GGGEEEEECCTTCHH------HHHHHHHHHHHHTCSCSEEEECCCCCCCCCGGGCCHHHHH
T ss_pred -------------------CCCCcEEEEEecCHH------HhhhhhhhhhcccCCcceehhhhhhccccccccccccccc
Confidence 135678899999976 6665553 6899999999753 235678
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
..+++|+.++..+.+.+.+. .+-.++|++||....... +
T Consensus 104 ~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~~--------------------------------------~ 145 (243)
T d1q7ba_ 104 DIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGN--------------------------------------G 145 (243)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC--------------------------------------T
T ss_pred cccceeechhhhhHHHHHHHHHHcCCCEeeeecchhhcCCC--------------------------------------C
Confidence 89999999988887766432 245689999998654221 1
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
....|+.+|...+.+.+... +|++++.|.||.|-.+.... +. .......... ....-
T Consensus 146 ~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~-------~~--~~~~~~~~~~---------~pl~R 207 (243)
T d1q7ba_ 146 GQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRA-------LS--DDQRAGILAQ---------VPAGR 207 (243)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHT-------SC--HHHHHHHHTT---------CTTSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecceEechhhhh-------hh--hhHHHHHHhc---------CCCCC
Confidence 12689999999999887766 78999999999986542211 11 1111111111 11234
Q ss_pred cccHHHHHHHHHHHHHhhh
Q psy17528 344 VVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~~~ 362 (366)
+...+|+|+++++++...+
T Consensus 208 ~~~pedvA~~v~fL~S~~s 226 (243)
T d1q7ba_ 208 LGGAQEIANAVAFLASDEA 226 (243)
T ss_dssp CBCHHHHHHHHHHHHSGGG
T ss_pred CCCHHHHHHHHHHHhCchh
Confidence 6789999999999886443
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=99.67 E-value=6.2e-16 Score=142.30 Aligned_cols=207 Identities=14% Similarity=0.109 Sum_probs=140.8
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++|++|||||++.||.+++++|++.| .+|++.+|++... + +.+.
T Consensus 2 ~l~GK~alITGas~GIG~aia~~la~~G---~~V~~~~~~~~~~---~-~~~~--------------------------- 47 (248)
T d2d1ya1 2 LFAGKGVLVTGGARGIGRAIAQAFAREG---ALVALCDLRPEGK---E-VAEA--------------------------- 47 (248)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSTTHH---H-HHHH---------------------------
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHHH---H-HHHH---------------------------
Confidence 4789999999999999999999999999 8999999985421 1 1110
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHI 190 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~ 190 (366)
....++.+|+++.+ ++..+++ ++|++|||||... ..+++
T Consensus 48 ---------------------~~~~~~~~Dv~~~~------~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~e~~ 100 (248)
T d2d1ya1 48 ---------------------IGGAFFQVDLEDER------ERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEW 100 (248)
T ss_dssp ---------------------HTCEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHH
T ss_pred ---------------------cCCeEEEEeCCCHH------HHHHHHHHHHHhcCCCCeEEEeCcCCCCCChhhCCHHHH
Confidence 12356889999976 5555553 6899999999753 23467
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 191 RTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
+..+++|+.++..+.+.+.+. .+-.++|++||.......
T Consensus 101 ~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~~~~~-------------------------------------- 142 (248)
T d2d1ya1 101 RRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAE-------------------------------------- 142 (248)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSBC--------------------------------------
T ss_pred HHHHHhhhhhHhhhhhhhcccccccccccccccccccccccc--------------------------------------
Confidence 889999999988887766432 245689999998764221
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
+....|+.+|...+.+.+... +|++++.|.||.|-.+.... .............. ........
T Consensus 143 ~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~---~~~~~~~~~~~~~~---------~~~~~pl~ 210 (248)
T d2d1ya1 143 QENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLE---AIALSPDPERTRRD---------WEDLHALR 210 (248)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHH---HHC--------CHH---------HHTTSTTS
T ss_pred cccchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCchHHH---HhhcCCCHHHHHHH---------HHhcCCCC
Confidence 112689999999998887665 78999999999987542100 00000000000000 01111233
Q ss_pred CcccHHHHHHHHHHHHHhhh
Q psy17528 343 DVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~~ 362 (366)
-+...+|+|+++++++...+
T Consensus 211 R~~~pedia~~v~fL~S~~s 230 (248)
T d2d1ya1 211 RLGKPEEVAEAVLFLASEKA 230 (248)
T ss_dssp SCBCHHHHHHHHHHHHSGGG
T ss_pred CCcCHHHHHHHHHHHhCchh
Confidence 46788999999999885443
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=99.66 E-value=6.6e-16 Score=142.22 Aligned_cols=208 Identities=13% Similarity=0.131 Sum_probs=142.7
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
+.+++|+++||||++.||.+++++|++.| .+|++.+|+.+. .+.+.+.+
T Consensus 2 nrL~gK~alVTGas~GIG~aia~~la~~G---a~V~~~~r~~~~---~~~~~~~~------------------------- 50 (251)
T d1zk4a1 2 NRLDGKVAIITGGTLGIGLAIATKFVEEG---AKVMITGRHSDV---GEKAAKSV------------------------- 50 (251)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHHH-------------------------
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHH---HHHHHHHh-------------------------
Confidence 45889999999999999999999999999 899999997421 12222211
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhh
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEH 189 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~ 189 (366)
. ...++.++.+|+++++ ++.++++ ++|++|||||... ..++
T Consensus 51 -----------------~--~~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~~~ 105 (251)
T d1zk4a1 51 -----------------G--TPDQIQFFQHDSSDED------GWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAE 105 (251)
T ss_dssp -----------------C--CTTTEEEEECCTTCHH------HHHHHHHHHHHHHSSCCEEEECCCCCCCCCTTTCCHHH
T ss_pred -----------------C--CCCcEEEEEccCCCHH------HHHHHHHHHHHHhCCceEEEeccccccccchhcccccc
Confidence 0 1357889999999986 5665553 6899999999752 2356
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc---CCC-cEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcc
Q psy17528 190 IRTAYNINVKGTQTILALAKRM---KGL-KSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHI 265 (366)
Q Consensus 190 ~~~~~~~nv~~~~~ll~~a~~~---~~~-~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (366)
++..+++|+.++..+.+.+.+. .+. .++|.+||.......
T Consensus 106 ~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~~~~------------------------------------ 149 (251)
T d1zk4a1 106 WRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGD------------------------------------ 149 (251)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCC------------------------------------
T ss_pred hhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccceeccC------------------------------------
Confidence 7889999999998888865432 132 478999998654211
Q ss_pred cCCCCchHHHHHHHHHHHHHHhc-------CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCC
Q psy17528 266 IGGKPNSYTLTKATAEDLVRQVG-------HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDP 338 (366)
Q Consensus 266 ~~~~~~~Y~~sK~~~E~~l~~~~-------~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~ 338 (366)
+....|+.+|...+.+.+... +|+.++.|.||.|..+.... ... ........ ..
T Consensus 150 --~~~~~Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I~PG~i~T~~~~~-------~~~-~~~~~~~~---------~~ 210 (251)
T d1zk4a1 150 --PSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDD-------LPG-AEEAMSQR---------TK 210 (251)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHT-------STT-HHHHHTST---------TT
T ss_pred --CCchhHHHHHHHHhcchHHHHHHHhcCCCcEEEEEEeCCCCCChhHHh-------cCC-HHHHHHHH---------hC
Confidence 112689999999887765422 68999999999987643211 110 00000000 11
Q ss_pred CcccCcccHHHHHHHHHHHHHhhh
Q psy17528 339 NISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 339 ~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
....-+...+|+|+++++++...+
T Consensus 211 ~pl~R~~~pedvA~~v~fL~S~~s 234 (251)
T d1zk4a1 211 TPMGHIGEPNDIAYICVYLASNES 234 (251)
T ss_dssp CTTSSCBCHHHHHHHHHHHHSGGG
T ss_pred CCCCCCcCHHHHHHHHHHHhCchh
Confidence 122347789999999999885443
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=99.66 E-value=9.2e-16 Score=141.69 Aligned_cols=218 Identities=15% Similarity=0.103 Sum_probs=142.0
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|++|||||++.||.+++++|++.| .+|++..|++.. ..+++.+.+..
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~G---a~V~~~~r~~~~--~~~~~~~~~~~------------------------- 51 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQG---ADIVLNGFGDAA--EIEKVRAGLAA------------------------- 51 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEECCSCHH--HHHHHHHHHHH-------------------------
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCCcHH--HHHHHHHHHHH-------------------------
Confidence 679999999999999999999999999 899999997531 12222221111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
....++.++.+|+++.+ ++..+++ .+|++|||||... ....++
T Consensus 52 -----------------~~g~~~~~~~~Dv~~~~------~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~ 108 (260)
T d1x1ta1 52 -----------------QHGVKVLYDGADLSKGE------AVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWD 108 (260)
T ss_dssp -----------------HHTSCEEEECCCTTSHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHH
T ss_pred -----------------hcCCcEEEEECCCCCHH------HHHHHHHHHHHHhCCCcEEEeecccccCCchhhhhHHhhh
Confidence 01357889999999987 6666553 6899999999752 235678
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
..+++|+.++..+.+.+.+. .+-.++|.+||..+.... +
T Consensus 109 ~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~--------------------------------------~ 150 (260)
T d1x1ta1 109 AILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVAS--------------------------------------A 150 (260)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC--------------------------------------T
T ss_pred hhhhccccccccccchhhhhHhhcCCceEeecccccceecc--------------------------------------C
Confidence 89999999988777655331 245689999998754221 1
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHH-HHhcCcceeecCCCCccc
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALAL-GAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~l~~~~~~~~ 342 (366)
....|+.+|...+.+.+... +|+.++.|.||.|-.+...... .........-. .... ..........
T Consensus 151 ~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~Pl~ 223 (260)
T d1x1ta1 151 NKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQI---SALAEKNGVDQETAAR----ELLSEKQPSL 223 (260)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC-------------------------------CHHHHCTTC
T ss_pred CcchhhhhhhhHHHhHHHHHHHhchhCcEEEEEecCCCCChhhhhhh---hhhhhhcCCChHHHHH----HHHHhcCCCC
Confidence 12679999999998887765 7899999999999766432110 00000000000 0000 0000011223
Q ss_pred CcccHHHHHHHHHHHHHhh
Q psy17528 343 DVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~ 361 (366)
-+...+|+|+++++++...
T Consensus 224 R~g~pediA~~v~fL~S~~ 242 (260)
T d1x1ta1 224 QFVTPEQLGGTAVFLASDA 242 (260)
T ss_dssp CCBCHHHHHHHHHHHHSGG
T ss_pred CCcCHHHHHHHHHHHhChh
Confidence 4678999999999988544
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=99.66 E-value=2e-15 Score=139.87 Aligned_cols=209 Identities=11% Similarity=0.040 Sum_probs=143.8
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++|+++||||++.||.+++++|.+.| .+|++..|+... ..+.+.+.+. .
T Consensus 4 dL~gK~alITGas~GIG~aia~~la~~G---~~Vv~~~r~~~~--~~~~~~~~~~--------~---------------- 54 (261)
T d1geea_ 4 DLEGKVVVITGSSTGLGKSMAIRFATEK---AKVVVNYRSKED--EANSVLEEIK--------K---------------- 54 (261)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSCHH--HHHHHHHHHH--------H----------------
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCcHH--HHHHHHHHHH--------h----------------
Confidence 4789999999999999999999999999 899999997531 1222222111 1
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHI 190 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~ 190 (366)
...++.++.+|+++++ ++.++++ ++|++|||||... ...++
T Consensus 55 -------------------~g~~~~~~~~Dvt~~~------~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~ 109 (261)
T d1geea_ 55 -------------------VGGEAIAVKGDVTVES------DVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDW 109 (261)
T ss_dssp -------------------TTCEEEEEECCTTSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHH
T ss_pred -------------------cCCcEEEEEccCCCHH------HHHHHHHHHHHHhCCCCEeeccceecCCcchhhcCHHHH
Confidence 2357788999999987 6665553 6899999999753 23467
Q ss_pred HHHHHHHHHHHHHHHHHHH----hcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 191 RTAYNINVKGTQTILALAK----RMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~----~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
+..+++|+.++..+.+.+. +.+....++++||.......
T Consensus 110 ~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~~~------------------------------------- 152 (261)
T d1geea_ 110 NKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPW------------------------------------- 152 (261)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCC-------------------------------------
T ss_pred HHHHHHhcccchhHHHHHhhhhccccccccccccccchhcccC-------------------------------------
Confidence 8899999999888776553 33334468899997654221
Q ss_pred CCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcc
Q psy17528 267 GGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNIS 341 (366)
Q Consensus 267 ~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~ 341 (366)
+....|+.+|...+.+.+... +|+.++.|.||.|..+... ............... ...
T Consensus 153 -~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~-------~~~~~~~~~~~~~~~---------~pl 215 (261)
T d1geea_ 153 -PLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINA-------EKFADPEQRADVESM---------IPM 215 (261)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGH-------HHHHSHHHHHHHHTT---------CTT
T ss_pred -ccccccccCCccchhhHHHHHHHhhhhCcEEEEEeeCcCcCHhHh-------hhcCCHHHHHHHHhc---------CCC
Confidence 112679999999999887766 7899999999999765321 000001111111111 112
Q ss_pred cCcccHHHHHHHHHHHHHhh
Q psy17528 342 MDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 342 ~~~v~vdDva~ai~~~~~~~ 361 (366)
.-+...+|+|++++.++...
T Consensus 216 ~R~~~pediA~~v~fL~S~~ 235 (261)
T d1geea_ 216 GYIGEPEEIAAVAAWLASSE 235 (261)
T ss_dssp SSCBCHHHHHHHHHHHHSGG
T ss_pred CCCCCHHHHHHHHHHHhCch
Confidence 33667899999999988544
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=8.2e-16 Score=141.96 Aligned_cols=206 Identities=14% Similarity=0.119 Sum_probs=143.5
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|+++||||++.||.+++++|++.| .+|++.+|+... .+++.+.++ .
T Consensus 9 L~gK~alITGas~GIG~aia~~la~~G---a~V~~~~r~~~~---~~~~~~~l~--------~----------------- 57 (255)
T d1fmca_ 9 LDGKCAIITGAGAGIGKEIAITFATAG---ASVVVSDINADA---ANHVVDEIQ--------Q----------------- 57 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTT---CEEEEEESCHHH---HHHHHHHHH--------H-----------------
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEECCHHH---HHHHHHHHH--------H-----------------
Confidence 579999999999999999999999999 899999997432 122222111 1
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC------hhhhHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR------FDEHIRT 192 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~------~~~~~~~ 192 (366)
...++.++.+|+++++ ++..+++ .+|++|||||... ..++++.
T Consensus 58 ------------------~g~~~~~~~~Dvs~~~------~~~~~~~~~~~~~g~iDilvnnAG~~~~~~~e~~~e~~~~ 113 (255)
T d1fmca_ 58 ------------------LGGQAFACRCDITSEQ------ELSALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRR 113 (255)
T ss_dssp ------------------TTCCEEEEECCTTCHH------HHHHHHHHHHHHHSSCCEEEECCCCCCCCCTTCCHHHHHH
T ss_pred ------------------cCCcEEEEEccCCCHH------HHHHHHHHHHHHcCCCCEeeeCCcCCCCCcccCCHHHHHH
Confidence 2357888999999976 5555543 6899999999753 2356788
Q ss_pred HHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCC
Q psy17528 193 AYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGK 269 (366)
Q Consensus 193 ~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (366)
.+++|+.++..+.+.+.+. .+-.++|.+||....... +.
T Consensus 114 ~~~vNl~~~~~~~~~~~~~m~~~~~g~Ii~isS~~~~~~~--------------------------------------~~ 155 (255)
T d1fmca_ 114 AYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKN--------------------------------------IN 155 (255)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCC--------------------------------------TT
T ss_pred HHHHHHHHhhhhHHHHHhhhccccccccccccccchhccc--------------------------------------cc
Confidence 9999999988887755431 244578999997654221 11
Q ss_pred CchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCc
Q psy17528 270 PNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDV 344 (366)
Q Consensus 270 ~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~ 344 (366)
...|+.+|...+.+.+... +|++++.|.||.|-.+.... . +. ........... ...-+
T Consensus 156 ~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~---~---~~--~e~~~~~~~~~---------pl~R~ 218 (255)
T d1fmca_ 156 MTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKS---V---IT--PEIEQKMLQHT---------PIRRL 218 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHT---T---CC--HHHHHHHHHTC---------SSCSC
T ss_pred cccchhHHHHHHHHHHHHHHHhCccCeEEEEeeeCcCcChHhhc---c---CC--HHHHHHHHhcC---------CCCCC
Confidence 2689999999999887766 78999999999987643211 0 11 11222222211 12236
Q ss_pred ccHHHHHHHHHHHHHhh
Q psy17528 345 VPGDRVINAMAALAWYF 361 (366)
Q Consensus 345 v~vdDva~ai~~~~~~~ 361 (366)
...+|+|++++.++...
T Consensus 219 g~pedvA~~v~fL~S~~ 235 (255)
T d1fmca_ 219 GQPQDIANAALFLCSPA 235 (255)
T ss_dssp BCHHHHHHHHHHHHSGG
T ss_pred cCHHHHHHHHHHHhCch
Confidence 67899999999988543
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.66 E-value=2.9e-15 Score=137.83 Aligned_cols=206 Identities=12% Similarity=0.172 Sum_probs=144.4
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|++|||||++.||.+++++|.+.| .+|++.+|+... .+++.+.++
T Consensus 8 lenKvalITGas~GIG~a~a~~la~~G---a~V~~~~r~~~~---l~~~~~~l~-------------------------- 55 (251)
T d2c07a1 8 GENKVALVTGAGRGIGREIAKMLAKSV---SHVICISRTQKS---CDSVVDEIK-------------------------- 55 (251)
T ss_dssp CSSCEEEEESTTSHHHHHHHHHHTTTS---SEEEEEESSHHH---HHHHHHHHH--------------------------
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcC---CEEEEEECCHHH---HHHHHHHHH--------------------------
Confidence 468999999999999999999999999 899999997432 122222111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
....++.++.+|+++++ ++..+++ .+|++|||||... ....++
T Consensus 56 -----------------~~g~~~~~~~~Dvt~~~------~v~~~~~~~~~~~g~iDilvnnag~~~~~~~~~~~~~~~~ 112 (251)
T d2c07a1 56 -----------------SFGYESSGYAGDVSKKE------EISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWE 112 (251)
T ss_dssp -----------------TTTCCEEEEECCTTCHH------HHHHHHHHHHHHCSCCCEEEECCCCCCCCCTTTCCHHHHH
T ss_pred -----------------hcCCcEEEEEccCCCHH------HHHHHHHHHHHhcCCceeeeeccccccccccccccHHHHh
Confidence 12357889999999987 6666553 6899999999753 235678
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
..+++|+.++..+.+++.+. .+..++|++||....... +
T Consensus 113 ~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~--------------------------------------~ 154 (251)
T d2c07a1 113 DVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGN--------------------------------------V 154 (251)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC--------------------------------------T
T ss_pred hhheeeehhhhhhhhhcCcccccCCCeEEEEECCHHhcCCC--------------------------------------C
Confidence 89999999988877755321 245699999998654221 1
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
....|+.+|...+.+.+... +|++++.|.||.|-.+..... . ........... ...-
T Consensus 155 ~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~V~PG~v~T~~~~~~-------~--~~~~~~~~~~~---------pl~R 216 (251)
T d2c07a1 155 GQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKI-------S--EQIKKNIISNI---------PAGR 216 (251)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----C-------C--HHHHHHHHTTC---------TTSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCEeccccccc-------C--HHHHHHHHhcC---------CCCC
Confidence 12679999999999987765 789999999999987643211 1 12222222221 1233
Q ss_pred cccHHHHHHHHHHHHHhhh
Q psy17528 344 VVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~~~ 362 (366)
+...+|+|++++.++...+
T Consensus 217 ~~~pedvA~~v~fL~S~~s 235 (251)
T d2c07a1 217 MGTPEEVANLACFLSSDKS 235 (251)
T ss_dssp CBCHHHHHHHHHHHHSGGG
T ss_pred CcCHHHHHHHHHHHhCchh
Confidence 6788999999999886543
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=2.4e-15 Score=137.86 Aligned_cols=205 Identities=17% Similarity=0.227 Sum_probs=145.2
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++|++|||||++.||.+++++|++.| .+|++.+|+.. ++.+... +
T Consensus 4 ~L~GK~~lITGas~GIG~aia~~la~~G---~~V~~~~r~~~------~l~~~~~---------~--------------- 50 (244)
T d1pr9a_ 4 FLAGRRVLVTGAGKGIGRGTVQALHATG---ARVVAVSRTQA------DLDSLVR---------E--------------- 50 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHHHH---------H---------------
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcC---CEEEEEECCHH------HHHHHHH---------h---------------
Confidence 4789999999999999999999999999 89999999742 2222111 1
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh---CcCEEEEcCcccC-------hhhhHHHHH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS---QTTIIFHIAATVR-------FDEHIRTAY 194 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~---~~d~Vih~a~~~~-------~~~~~~~~~ 194 (366)
. ..+..+.+|+++.+ .+.++++ ++|++|||||... ..+.++..+
T Consensus 51 ----------------~----~~~~~~~~Dv~d~~------~v~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~ 104 (244)
T d1pr9a_ 51 ----------------C----PGIEPVCVDLGDWE------ATERALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSF 104 (244)
T ss_dssp ----------------S----TTCEEEECCTTCHH------HHHHHHTTCCCCCEEEECCCCCCCBCGGGCCHHHHHHHH
T ss_pred ----------------c----CCCeEEEEeCCCHH------HHHHHHHHhCCceEEEeccccccccchhhhhHHHHHHHH
Confidence 1 35678899999987 7777775 6799999999753 235678899
Q ss_pred HHHHHHHHHHHHHHHh----cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCC
Q psy17528 195 NINVKGTQTILALAKR----MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKP 270 (366)
Q Consensus 195 ~~nv~~~~~ll~~a~~----~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (366)
++|+.++..+.+.+.+ .....++|++||........ ..
T Consensus 105 ~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~~--------------------------------------~~ 146 (244)
T d1pr9a_ 105 EVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVT--------------------------------------NH 146 (244)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCT--------------------------------------TB
T ss_pred HHhhhhhhHHHHHhhhHHHHhCCcceEeeccccccccccc--------------------------------------ch
Confidence 9999988887775543 13456899999987542211 12
Q ss_pred chHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcc
Q psy17528 271 NSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVV 345 (366)
Q Consensus 271 ~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v 345 (366)
..|+.+|...+.+.+... ++++++.|.||.|..+..... .............. ...-+.
T Consensus 147 ~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~-------~~~~~~~~~~~~~~---------pl~R~~ 210 (244)
T d1pr9a_ 147 SVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQAT-------WSDPHKAKTMLNRI---------PLGKFA 210 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHTT-------SCSHHHHHHHHTTC---------TTCSCB
T ss_pred hhhhhhHHHHHHHHHHHHHHhCCCcEEEEEEeeCcCcChHHhhh-------ccChHHHHHHHhcC---------CCCCCc
Confidence 679999999999887765 789999999999976532110 00011122222211 123477
Q ss_pred cHHHHHHHHHHHHHhhh
Q psy17528 346 PGDRVINAMAALAWYFL 362 (366)
Q Consensus 346 ~vdDva~ai~~~~~~~~ 362 (366)
..+|+|++++.++...+
T Consensus 211 ~peevA~~v~fL~S~~a 227 (244)
T d1pr9a_ 211 EVEHVVNAILFLLSDRS 227 (244)
T ss_dssp CHHHHHHHHHHHHSGGG
T ss_pred CHHHHHHHHHHHhCchh
Confidence 89999999999885443
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=99.65 E-value=3e-15 Score=138.33 Aligned_cols=211 Identities=13% Similarity=0.105 Sum_probs=143.9
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|++|||||++.||.+++++|++.| .+|++.+|++.. .+...+.+. .
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G---~~V~i~~r~~~~---l~~~~~~~~--------~----------------- 52 (258)
T d1ae1a_ 4 LKGTTALVTGGSKGIGYAIVEELAGLG---ARVYTCSRNEKE---LDECLEIWR--------E----------------- 52 (258)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHHHH--------H-----------------
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHH---HHHHHHHHH--------h-----------------
Confidence 689999999999999999999999999 899999997432 122222211 1
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--------CcCEEEEcCcccC-------hhhhH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--------QTTIIFHIAATVR-------FDEHI 190 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--------~~d~Vih~a~~~~-------~~~~~ 190 (366)
...++.++.+|+++.+ ++.++++ ..|++|||||... ....+
T Consensus 53 ------------------~~~~~~~~~~D~s~~~------~~~~~~~~~~~~~~g~idilinnag~~~~~~~~~~~~~~~ 108 (258)
T d1ae1a_ 53 ------------------KGLNVEGSVCDLLSRT------ERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDY 108 (258)
T ss_dssp ------------------TTCCEEEEECCTTCHH------HHHHHHHHHHHHTTSCCCEEEECCCCCCCCCTTTCCHHHH
T ss_pred ------------------cCCCceEEEeecCCHH------HHHHHHHHHHHHhCCCcEEEeccccccccCccccCCHHHH
Confidence 1356778899999987 5655442 3799999999753 24567
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 191 RTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
+..+++|+.++..+.+++... ++..++|++||..+....
T Consensus 109 ~~~~~~nl~~~~~~~~~~~~~m~~~~~g~ii~isS~~~~~~~-------------------------------------- 150 (258)
T d1ae1a_ 109 NIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSAL-------------------------------------- 150 (258)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSCC--------------------------------------
T ss_pred hhhhhhcccccccccccccccccccccccccccccccccccc--------------------------------------
Confidence 889999999988887765432 356799999998764221
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
+....|+.+|...+.+.+... +++.+..|.||.|..+........ ............... ...
T Consensus 151 ~~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~---~~~~~~~~~~~~~~~---------plg 218 (258)
T d1ae1a_ 151 PSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKK---NPHQKEEIDNFIVKT---------PMG 218 (258)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC----------------CHHHHHHHHHHS---------TTC
T ss_pred ccchhHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeCcccCcchhhhhhh---hhhhHHHHHHHHhcC---------CCC
Confidence 112689999999999887766 789999999999987643221110 001112222222211 123
Q ss_pred CcccHHHHHHHHHHHHHhh
Q psy17528 343 DVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~ 361 (366)
-+...+|+|++++.++...
T Consensus 219 R~~~pediA~~v~fL~S~~ 237 (258)
T d1ae1a_ 219 RAGKPQEVSALIAFLCFPA 237 (258)
T ss_dssp SCBCHHHHHHHHHHHHSGG
T ss_pred CCcCHHHHHHHHHHHhChh
Confidence 3789999999999988543
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.65 E-value=4.9e-15 Score=135.64 Aligned_cols=200 Identities=16% Similarity=0.094 Sum_probs=140.2
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|+++||||++.||.+++++|++.| .+|++.+|+.. ++.+..+ .
T Consensus 3 L~gK~~lITGas~GIG~aia~~l~~~G---~~V~~~~r~~~------~l~~~~~---------~---------------- 48 (242)
T d1ulsa_ 3 LKDKAVLITGAAHGIGRATLELFAKEG---ARLVACDIEEG------PLREAAE---------A---------------- 48 (242)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHHHH---------T----------------
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHH------HHHHHHH---------H----------------
Confidence 679999999999999999999999999 89999999742 2222111 0
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
-+..++.+|+++++ ++.++++ .+|++|||||... ..+.++
T Consensus 49 --------------------~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~ 102 (242)
T d1ulsa_ 49 --------------------VGAHPVVMDVADPA------SVERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWE 102 (242)
T ss_dssp --------------------TTCEEEECCTTCHH------HHHHHHHHHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHH
T ss_pred --------------------cCCeEEEEecCCHH------HHHHHHHHHHHhcCCceEEEECCcccccCchhhCcchhhh
Confidence 24567899999987 6665553 6899999999753 234678
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 192 TAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
..+++|+.++..+.+.+.+. .+...++.+||....+. +
T Consensus 103 ~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~~~ss~~~~~~---------------------------------------~ 143 (242)
T d1ulsa_ 103 LVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYLGN---------------------------------------L 143 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGGCC---------------------------------------T
T ss_pred ccccccchhhhhhhhhccccccccccceeeeeccccccCC---------------------------------------C
Confidence 89999999998888866542 24445666666432211 0
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccC
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMD 343 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 343 (366)
....|+.+|...+.+.+... +|++++.|.||.|-.+.....+ ........... ...-
T Consensus 144 ~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~~---------~~~~~~~~~~~---------pl~R 205 (242)
T d1ulsa_ 144 GQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKVP---------EKVREKAIAAT---------PLGR 205 (242)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSSC---------HHHHHHHHHTC---------TTCS
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCcccChhhhcCC---------HHHHHHHHhcC---------CCCC
Confidence 12679999999998887765 7899999999999876443211 11122222211 1233
Q ss_pred cccHHHHHHHHHHHHHhhh
Q psy17528 344 VVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 344 ~v~vdDva~ai~~~~~~~~ 362 (366)
+...+|+|++++.++...+
T Consensus 206 ~~~pedia~~v~fL~S~~s 224 (242)
T d1ulsa_ 206 AGKPLEVAYAALFLLSDES 224 (242)
T ss_dssp CBCHHHHHHHHHHHHSGGG
T ss_pred CCCHHHHHHHHHHHhchhh
Confidence 6678999999999885443
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.65 E-value=1.9e-15 Score=139.83 Aligned_cols=206 Identities=16% Similarity=0.150 Sum_probs=131.2
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|+++||||++.||.+++++|++.| .+|++.+|+... .++..+. +..
T Consensus 6 LkgK~alVTGas~GIG~aiA~~la~~G---a~V~~~~r~~~~---l~~~~~~--------~~~----------------- 54 (259)
T d1xq1a_ 6 LKAKTVLVTGGTKGIGHAIVEEFAGFG---AVIHTCARNEYE---LNECLSK--------WQK----------------- 54 (259)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHH--------HHH-----------------
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHH---HHHHHHH--------HHh-----------------
Confidence 589999999999999999999999999 899999997432 1122111 111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--------CcCEEEEcCcccC-------hhhhH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--------QTTIIFHIAATVR-------FDEHI 190 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--------~~d~Vih~a~~~~-------~~~~~ 190 (366)
...++.++.+|+++.+ ++..+++ .+|++|||||... ...++
T Consensus 55 ------------------~~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~~g~idilvnnAG~~~~~~~~~~~~~~~ 110 (259)
T d1xq1a_ 55 ------------------KGFQVTGSVCDASLRP------EREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDF 110 (259)
T ss_dssp ------------------TTCCEEEEECCTTSHH------HHHHHHHHHHHHHTTCCSEEEEECCC------CCCCHHHH
T ss_pred ------------------cCCceEEEeccCCCHH------HHHHHHHHHHHHhCCCcccccccccccCCCchhhCCHHHH
Confidence 1357889999999876 4544432 4799999999753 23567
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 191 RTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
+..+++|+.++..+.+.+.+. .+..++|++||.......
T Consensus 111 ~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~-------------------------------------- 152 (259)
T d1xq1a_ 111 SFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSA-------------------------------------- 152 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC----------------------------------------------
T ss_pred HHHHHHHhhhheeeehhhhhcccccccccccccccccccccc--------------------------------------
Confidence 889999999988887765431 245689999998654221
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
+....|+.+|...+.+.+... +|++++.|-||.|-.+...... . ... .+. ........
T Consensus 153 ~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~V~PG~i~T~~~~~~~--~------~~~-~~~--------~~~~~pl~ 215 (259)
T d1xq1a_ 153 SVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVY--D------DEF-KKV--------VISRKPLG 215 (259)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC----------------------------------------
T ss_pred cccccccccccchhhhhHHHHHHhcccCeEEEEeccCcccCHHhhhhc--h------HHH-HHH--------HHhCCCCC
Confidence 112689999999998887765 7899999999999765432100 0 000 000 00111123
Q ss_pred CcccHHHHHHHHHHHHHhh
Q psy17528 343 DVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~ 361 (366)
-+...+|+|++++.++...
T Consensus 216 R~~~pedvA~~v~fL~S~~ 234 (259)
T d1xq1a_ 216 RFGEPEEVSSLVAFLCMPA 234 (259)
T ss_dssp --CCGGGGHHHHHHHTSGG
T ss_pred CCcCHHHHHHHHHHHhCch
Confidence 3567889999999887543
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=99.65 E-value=1.6e-15 Score=144.35 Aligned_cols=202 Identities=16% Similarity=0.089 Sum_probs=137.4
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
+.|+|+|||||||||++++++|++.| ++|++++|+.++... +. +.
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G---~~V~~l~R~~~~~~~-~~------------~~------------------- 46 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVG---HHVRAQVHSLKGLIA-EE------------LQ------------------- 46 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTT---CCEEEEESCSCSHHH-HH------------HH-------------------
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCC---CeEEEEECCcchhhh-hh------------hc-------------------
Confidence 36899999999999999999999999 889999998654211 11 11
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChhhhHHHHHHHHHHHHHHHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFDEHIRTAYNINVKGTQTILA 206 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ll~ 206 (366)
..+.++++.+|+.+.. ..+..++.+++.+++...... ..++..+.++++
T Consensus 47 -----------------~~~~v~~~~gD~~d~~-----~~~~~a~~~~~~~~~~~~~~~---------~~~~~~~~~~~~ 95 (350)
T d1xgka_ 47 -----------------AIPNVTLFQGPLLNNV-----PLMDTLFEGAHLAFINTTSQA---------GDEIAIGKDLAD 95 (350)
T ss_dssp -----------------TSTTEEEEESCCTTCH-----HHHHHHHTTCSEEEECCCSTT---------SCHHHHHHHHHH
T ss_pred -----------------ccCCCEEEEeeCCCcH-----HHHHHHhcCCceEEeeccccc---------chhhhhhhHHHH
Confidence 1257899999999864 145677789999888765321 224556778899
Q ss_pred HHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHH
Q psy17528 207 LAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQ 286 (366)
Q Consensus 207 ~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~ 286 (366)
++.+. ++++++++||......... .....|..+|...|..+.+
T Consensus 96 aa~~a-gv~~~v~~Ss~~~~~~~~~------------------------------------~~~~~~~~~k~~~~~~~~~ 138 (350)
T d1xgka_ 96 AAKRA-GTIQHYIYSSMPDHSLYGP------------------------------------WPAVPMWAPKFTVENYVRQ 138 (350)
T ss_dssp HHHHH-SCCSEEEEEECCCGGGTSS------------------------------------CCCCTTTHHHHHHHHHHHT
T ss_pred HHHHh-CCCceEEEeeccccccCCc------------------------------------ccchhhhhhHHHHHHHHHh
Confidence 98887 7778888888643322110 1125678889999988877
Q ss_pred hcCCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcc-eeecCCCCcccCcccH-HHHHHHHHHHHHhh
Q psy17528 287 VGHELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLI-RVVQTDPNISMDVVPG-DRVINAMAALAWYF 361 (366)
Q Consensus 287 ~~~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~l~~~~~~~~~~v~v-dDva~ai~~~~~~~ 361 (366)
. +++++++||+..++.............. ...+.. ...+.+++....++++ +|+++++..++..+
T Consensus 139 ~--~~~~~~vr~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~~Dva~~v~~~l~~~ 205 (350)
T d1xgka_ 139 L--GLPSTFVYAGIYNNNFTSLPYPLFQMEL--------MPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFKDG 205 (350)
T ss_dssp S--SSCEEEEEECEEGGGCBSSSCSSCBEEE--------CTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHHHHHC
T ss_pred h--ccCceeeeeceeeccccccccccccccc--------cccccceeeecccCCCcceEEEeHHHHHHHHHHHHhCC
Confidence 6 5899999999988754322111111000 012221 2334456777888876 89999999888653
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=99.64 E-value=1.9e-15 Score=139.73 Aligned_cols=213 Identities=15% Similarity=0.119 Sum_probs=144.1
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|+++||||++.||.+++++|++.| .+|++.+|+.... +...+.+. ..
T Consensus 2 l~gK~alITGas~GIG~aia~~la~~G---a~V~i~~r~~~~l---~~~~~~~~--------~~---------------- 51 (258)
T d1iy8a_ 2 FTDRVVLITGGGSGLGRATAVRLAAEG---AKLSLVDVSSEGL---EASKAAVL--------ET---------------- 51 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHH---HHHHHHHH--------HH----------------
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHHH---HHHHHHHH--------hh----------------
Confidence 679999999999999999999999999 8999999975321 11111111 10
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC--------hhhhH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR--------FDEHI 190 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~--------~~~~~ 190 (366)
....++.++.+|+++++ ++..+++ .+|++|||||... ....+
T Consensus 52 -----------------~~~~~~~~~~~Dvt~~~------~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~ 108 (258)
T d1iy8a_ 52 -----------------APDAEVLTTVADVSDEA------QVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEF 108 (258)
T ss_dssp -----------------CTTCCEEEEECCTTSHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCCBCGGGSCHHHH
T ss_pred -----------------CCCCeEEEEeccCCCHH------HHHHHHHHHHHHhCCCCEEEECCcccccCCchhhhhhhHH
Confidence 11257888999999987 6665553 6899999999632 12467
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 191 RTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
+..+++|+.++..+.+.+.+. .+-.++|++||.......
T Consensus 109 ~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~-------------------------------------- 150 (258)
T d1iy8a_ 109 DKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGI-------------------------------------- 150 (258)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSBC--------------------------------------
T ss_pred HHHhhhhccchhhhhhhhHhhhhhhcCCCCcccccHhhccCC--------------------------------------
Confidence 889999999988888765331 245689999998654221
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccc--hHHHHHHHHhcCcceeecCCCCc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFN--GVMALALGAGTGLIRVVQTDPNI 340 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~l~~~~~~ 340 (366)
+....|+.+|...+.+.+... +|+++..|.||.|..+.... +..... ............ ..
T Consensus 151 ~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~i~PG~v~T~~~~~---~~~~~~~~~~~~~~~~~~~~---------~p 218 (258)
T d1iy8a_ 151 GNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVEN---SMKQLDPENPRKAAEEFIQV---------NP 218 (258)
T ss_dssp SSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHH---HHHHHCTTCHHHHHHHHHTT---------CT
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhCccCceEEEEeeCcccCHHHHH---HHhhcCcccHHHHHHHHHhc---------CC
Confidence 112689999999988887765 78999999999987642110 000000 001111112211 12
Q ss_pred ccCcccHHHHHHHHHHHHHhh
Q psy17528 341 SMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 341 ~~~~v~vdDva~ai~~~~~~~ 361 (366)
..-+...+|+|++++.++...
T Consensus 219 l~R~~~p~dvA~~v~fL~S~~ 239 (258)
T d1iy8a_ 219 SKRYGEAPEIAAVVAFLLSDD 239 (258)
T ss_dssp TCSCBCHHHHHHHHHHHTSGG
T ss_pred CCCCcCHHHHHHHHHHHhCch
Confidence 234678899999999988543
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.64 E-value=7.8e-15 Score=135.65 Aligned_cols=218 Identities=14% Similarity=0.116 Sum_probs=138.1
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++|++|||||++.||.+++++|++.| .+|++.+|+... .+++.+.+. .
T Consensus 2 rl~gKvalVTGas~GIG~aia~~la~~G---a~V~~~~r~~~~---l~~~~~~l~--------~---------------- 51 (264)
T d1spxa_ 2 RFAEKVAIITGSSNGIGRATAVLFAREG---AKVTITGRHAER---LEETRQQIL--------A---------------- 51 (264)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHHHH--------H----------------
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCC---CEEEEEECCHHH---HHHHHHHHH--------h----------------
Confidence 3689999999999999999999999999 899999997432 122222111 1
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-----------h
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-----------F 186 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-----------~ 186 (366)
......++.++.+|+++.+ ++.++++ ++|++|||||... .
T Consensus 52 ----------------~~~~~~~~~~~~~Dvt~~~------~v~~~~~~~~~~~g~iDilvnnAG~~~~~~~~~~~~~~~ 109 (264)
T d1spxa_ 52 ----------------AGVSEQNVNSVVADVTTDA------GQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQS 109 (264)
T ss_dssp ----------------TTCCGGGEEEEECCTTSHH------HHHHHHHHHHHHHSCCCEEEECCC-------------CC
T ss_pred ----------------cCCCcCceEEEEccCCCHH------HHHHHHHHHHHHhCCCCEeecccccccCCccccccccCC
Confidence 1112246889999999987 6666553 6899999999641 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhc--CCCcEEEEeeCcc-eecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhh
Q psy17528 187 DEHIRTAYNINVKGTQTILALAKRM--KGLKSFVHVSTAY-CNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNE 263 (366)
Q Consensus 187 ~~~~~~~~~~nv~~~~~ll~~a~~~--~~~~~~v~iSS~~-~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 263 (366)
.+.++..+++|+.++..+.+.+.+. +...++|.++|.. ..... |
T Consensus 110 ~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~S~~~~~~~~----------~----------------------- 156 (264)
T d1spxa_ 110 IESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGLHAT----------P----------------------- 156 (264)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTTSSSSCC----------T-----------------------
T ss_pred HHHHHHHHHHhHHHHHHHHhhhCCccccccCcceeeeeeccccccC----------C-----------------------
Confidence 2457788999999988887765432 1223566666653 22111 0
Q ss_pred cccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCC
Q psy17528 264 HIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDP 338 (366)
Q Consensus 264 ~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~ 338 (366)
....|+.+|...+.+.+... +|++++.|.||.|-.+.........................
T Consensus 157 -----~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 222 (264)
T d1spxa_ 157 -----DFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKEC--------- 222 (264)
T ss_dssp -----TSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHHHHH---------
T ss_pred -----CchhhhhhhhhHHHHHHHHHHHhcccCeEEEEEeeCCCCCcchhccCCcHHHHHHHHHHHHHHHhc---------
Confidence 11579999999998887766 78999999999997664321110000000001111111111
Q ss_pred CcccCcccHHHHHHHHHHHHHhh
Q psy17528 339 NISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 339 ~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
....-+...+|+|++++.++..+
T Consensus 223 ~Pl~R~g~pedvA~~v~fL~S~~ 245 (264)
T d1spxa_ 223 VPAGVMGQPQDIAEVIAFLADRK 245 (264)
T ss_dssp CTTSSCBCHHHHHHHHHHHHCHH
T ss_pred CCCCCCcCHHHHHHHHHHHhCCc
Confidence 01223677899999999988644
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.64 E-value=7.6e-15 Score=134.33 Aligned_cols=203 Identities=17% Similarity=0.208 Sum_probs=143.3
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|++|||||++.||.+++++|.+.| .+|++.+|+.+ ++.+... +
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~G---a~V~~~~r~~~------~l~~~~~---------~---------------- 48 (242)
T d1cyda_ 3 FSGLRALVTGAGKGIGRDTVKALHASG---AKVVAVTRTNS------DLVSLAK---------E---------------- 48 (242)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHHHH---------H----------------
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEECCHH------HHHHHHH---------h----------------
Confidence 579999999999999999999999999 89999999742 2222111 1
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh---CcCEEEEcCcccC-------hhhhHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS---QTTIIFHIAATVR-------FDEHIRTAYN 195 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~---~~d~Vih~a~~~~-------~~~~~~~~~~ 195 (366)
...+..+.+|+++.+ .+.++++ ++|++|||||... ....++..++
T Consensus 49 -------------------~~~~~~~~~Dv~~~~------~v~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~ 103 (242)
T d1cyda_ 49 -------------------CPGIEPVCVDLGDWD------ATEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFS 103 (242)
T ss_dssp -------------------STTCEEEECCTTCHH------HHHHHHTTCCCCSEEEECCCCCCCBCGGGCCHHHHHHHHH
T ss_pred -------------------cCCCeEEEEeCCCHH------HHHHHHHHcCCCeEEEECCccccchhHHHHHHHHHHHHHH
Confidence 135678899999987 7777776 6799999999753 2346788999
Q ss_pred HHHHHHHHHHHHHHh----cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCc
Q psy17528 196 INVKGTQTILALAKR----MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPN 271 (366)
Q Consensus 196 ~nv~~~~~ll~~a~~----~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (366)
+|+.++..+.+.+.+ .+...++|.+||....... +...
T Consensus 104 vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~--------------------------------------~~~~ 145 (242)
T d1cyda_ 104 VNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTF--------------------------------------PNLI 145 (242)
T ss_dssp HHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC--------------------------------------TTBH
T ss_pred HHhccchHHHHHhchhhhhhcccCcccccchhhccccC--------------------------------------Cccc
Confidence 999998888775532 2344689999997654221 1116
Q ss_pred hHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCccc
Q psy17528 272 SYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVP 346 (366)
Q Consensus 272 ~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~ 346 (366)
.|+.+|...+.+.+... +|+++..|.||.|-.+... ................ ...-+..
T Consensus 146 ~Y~asKaal~~lt~~lA~e~~~~gIrvN~I~PG~i~T~~~~-------~~~~~~~~~~~~~~~~---------pl~R~~~ 209 (242)
T d1cyda_ 146 TYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGK-------KVSADPEFARKLKERH---------PLRKFAE 209 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHH-------HHTCCHHHHHHHHHHS---------TTSSCBC
T ss_pred cccchHHHHHHHHHHHHHHhCccCeecccCCCCCccCHHHH-------hhcCCHHHHHHHHhcC---------CCCCCcC
Confidence 79999999999887766 7899999999998764221 0110011222221111 1234677
Q ss_pred HHHHHHHHHHHHHhh
Q psy17528 347 GDRVINAMAALAWYF 361 (366)
Q Consensus 347 vdDva~ai~~~~~~~ 361 (366)
.+|+|++++.++...
T Consensus 210 peeva~~v~fL~S~~ 224 (242)
T d1cyda_ 210 VEDVVNSILFLLSDR 224 (242)
T ss_dssp HHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHHhCch
Confidence 899999999988544
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=99.64 E-value=8.5e-15 Score=134.27 Aligned_cols=172 Identities=19% Similarity=0.252 Sum_probs=128.6
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
+|-.+.+||||||+|.||.+++++|.++|. ..|+++.|+.......+.+.+.+..
T Consensus 5 ~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga--~~vvl~~R~~~~~~~~~~~~~~l~~----------------------- 59 (259)
T d2fr1a1 5 EWKPTGTVLVTGGTGGVGGQIARWLARRGA--PHLLLVSRSGPDADGAGELVAELEA----------------------- 59 (259)
T ss_dssp CCCCCSEEEEETTTSHHHHHHHHHHHHHTC--SEEEEEESSGGGSTTHHHHHHHHHH-----------------------
T ss_pred ccCCcCEEEEECCCcHHHHHHHHHHHHCCC--CEEEEEeCCccCHHHHHHHHHHHHh-----------------------
Confidence 455688999999999999999999999982 3688888875443333333332211
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh------CcCEEEEcCcccC-------hhhhH
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS------QTTIIFHIAATVR-------FDEHI 190 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~------~~d~Vih~a~~~~-------~~~~~ 190 (366)
...++.++.+|++|.+ .+..++. .+|.|||++|... ....+
T Consensus 60 --------------------~g~~v~~~~~Dv~d~~------~~~~~~~~i~~~~~i~~vv~~ag~~~~~~~~~~~~~~~ 113 (259)
T d2fr1a1 60 --------------------LGARTTVAACDVTDRE------SVRELLGGIGDDVPLSAVFHAAATLDDGTVDTLTGERI 113 (259)
T ss_dssp --------------------TTCEEEEEECCTTCHH------HHHHHHHTSCTTSCEEEEEECCCCCCCCCGGGCCHHHH
T ss_pred --------------------ccccccccccccchHH------HHHHhhccccccccccccccccccccccccccccHHHH
Confidence 2357899999999987 6777665 4689999999753 12345
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCC
Q psy17528 191 RTAYNINVKGTQTILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKP 270 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (366)
+..++.|+.+...+.++.... ...+||++||..+..... ..
T Consensus 114 ~~~~~~~~~g~~~l~~~~~~~-~~~~iv~~SS~a~~~g~~--------------------------------------~~ 154 (259)
T d2fr1a1 114 ERASRAKVLGARNLHELTREL-DLTAFVLFSSFASAFGAP--------------------------------------GL 154 (259)
T ss_dssp HHHTHHHHHHHHHHHHHHTTS-CCSEEEEEEEHHHHTCCT--------------------------------------TC
T ss_pred HHHhhhhccchhHHHHHhhcc-CCceEeeecchhhccCCc--------------------------------------cc
Confidence 678889999999998887765 667899999986542211 11
Q ss_pred chHHHHHHHHHHHHHHhc-CCCCEEEEecCccccCC
Q psy17528 271 NSYTLTKATAEDLVRQVG-HELPICVLRPSIVFPTL 305 (366)
Q Consensus 271 ~~Y~~sK~~~E~~l~~~~-~gl~~~ilRp~~v~G~~ 305 (366)
..|+.+|...+.+..+.. .|++++.|.||.|.+++
T Consensus 155 ~~YaAaka~l~~la~~~~~~Gi~v~~I~pg~~~~~g 190 (259)
T d2fr1a1 155 GGYAPGNAYLDGLAQQRRSDGLPATAVAWGTWAGSG 190 (259)
T ss_dssp TTTHHHHHHHHHHHHHHHHTTCCCEEEEECCBC---
T ss_pred HHHHHHHHhHHHHHHHHHhCCCCEEECCCCcccCCc
Confidence 679999999999988877 89999999999888764
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=99.63 E-value=1.6e-14 Score=133.74 Aligned_cols=212 Identities=20% Similarity=0.211 Sum_probs=145.1
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
+.+++|++|||||++.||.+++++|++.| .+|++.+|+... .+++.+.+.
T Consensus 2 nrL~gKvalITGas~GIG~aia~~la~~G---a~V~i~~r~~~~---~~~~~~~l~------------------------ 51 (268)
T d2bgka1 2 NRLQDKVAIITGGAGGIGETTAKLFVRYG---AKVVIADIADDH---GQKVCNNIG------------------------ 51 (268)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHHHC------------------------
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEECCHHH---HHHHHHHhc------------------------
Confidence 45889999999999999999999999999 899999997421 122222111
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC---------hh
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR---------FD 187 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~---------~~ 187 (366)
....+.++.+|+++++ ++..+++ .+|++|||||... ..
T Consensus 52 --------------------~~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~ 105 (268)
T d2bgka1 52 --------------------SPDVISFVHCDVTKDE------DVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGN 105 (268)
T ss_dssp --------------------CTTTEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCSSCSSTTTCCH
T ss_pred --------------------CCCceEEEEccCCCHH------HHHHHHHHHHHHcCCcceeccccccccCCCcccccCcH
Confidence 1246788999999986 6666553 6899999999642 12
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhc
Q psy17528 188 EHIRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEH 264 (366)
Q Consensus 188 ~~~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 264 (366)
..++..+++|+.++..+.+.+.+. .+..++|.+||........
T Consensus 106 ~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~ii~iss~~~~~~~~---------------------------------- 151 (268)
T d2bgka1 106 EDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGE---------------------------------- 151 (268)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCCT----------------------------------
T ss_pred HHHHHHHHHhhcchhhhhhhhcchHhhcCCCCcccccccccccccc----------------------------------
Confidence 356788999999988888765432 2456899999876542211
Q ss_pred ccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCC
Q psy17528 265 IIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPN 339 (366)
Q Consensus 265 ~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~ 339 (366)
.....|+.+|...+.+.+... +|++++.|.||.|-.+......... ........... . .
T Consensus 152 ---~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~------~~~~~~~~~~~-~------~ 215 (268)
T d2bgka1 152 ---GVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVD------SSRVEELAHQA-A------N 215 (268)
T ss_dssp ---TSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCC------HHHHHHHHHHT-C------S
T ss_pred ---ccccccchhHHHHHhCHHHHHHHhChhCeEEEecCCCCccChHHhhhhcCC------HHHHHHHHHhc-c------c
Confidence 011479999999999887765 7899999999999887543221111 11111111000 0 1
Q ss_pred cccCcccHHHHHHHHHHHHHhh
Q psy17528 340 ISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 340 ~~~~~v~vdDva~ai~~~~~~~ 361 (366)
...-+...+|+|+++++++...
T Consensus 216 ~~gr~~~pedvA~~v~fL~S~~ 237 (268)
T d2bgka1 216 LKGTLLRAEDVADAVAYLAGDE 237 (268)
T ss_dssp SCSCCCCHHHHHHHHHHHHSGG
T ss_pred cCCCCcCHHHHHHHHHHHhChh
Confidence 1123667899999999988544
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=4.5e-15 Score=136.62 Aligned_cols=207 Identities=14% Similarity=0.144 Sum_probs=142.0
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
+.+++|+++||||++.||.++++.|++.| .+|++.+|++. ++.+. ..+
T Consensus 2 ~rl~GK~alITGas~GIG~aia~~la~~G---a~V~i~~r~~~------~~~~~---------~~~-------------- 49 (250)
T d1ydea1 2 TRYAGKVVVVTGGGRGIGAGIVRAFVNSG---ARVVICDKDES------GGRAL---------EQE-------------- 49 (250)
T ss_dssp CTTTTCEEEEETCSSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHH---------HHH--------------
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHH------HHHHH---------HHh--------------
Confidence 35789999999999999999999999999 89999999742 12111 111
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC----h----hh
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR----F----DE 188 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~----~----~~ 188 (366)
..++.++.+|+++.+ ++.++++ .+|++|||||... + .+
T Consensus 50 ---------------------~~~~~~~~~Dvs~~~------~v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~ 102 (250)
T d1ydea1 50 ---------------------LPGAVFILCDVTQED------DVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQ 102 (250)
T ss_dssp ---------------------CTTEEEEECCTTSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHH
T ss_pred ---------------------cCCCeEEEccCCCHH------HHHHHHHHHHHhcCCCCEEEecccccccccccccccHH
Confidence 135678999999987 6666553 6899999999532 1 24
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc--CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 189 HIRTAYNINVKGTQTILALAKRM--KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 189 ~~~~~~~~nv~~~~~ll~~a~~~--~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
.++..+++|+.++..+.+.+.+. .+-.++|.+||.......
T Consensus 103 ~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS~~~~~~~------------------------------------- 145 (250)
T d1ydea1 103 GFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAIGQ------------------------------------- 145 (250)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHHCC-------------------------------------
T ss_pred HHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCcccccccccccc-------------------------------------
Confidence 57889999999988887765432 122589999998654211
Q ss_pred CCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcc
Q psy17528 267 GGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNIS 341 (366)
Q Consensus 267 ~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~ 341 (366)
+....|+.+|...+.+.+... +|++++.|.||.|-.+.... +..........+.+..... ..
T Consensus 146 -~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~i~T~~~~~---~~~~~~~~~~~~~~~~~~~---------pl 212 (250)
T d1ydea1 146 -AQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEE---LAALMPDPRASIREGMLAQ---------PL 212 (250)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHH---HHTTSSSHHHHHHHHHHTS---------TT
T ss_pred -cCcchhHHHHhhHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHH---HhhcCCCHHHHHHHHHhcC---------CC
Confidence 112689999999998887765 78999999999986542110 0000011111222222211 12
Q ss_pred cCcccHHHHHHHHHHHHH
Q psy17528 342 MDVVPGDRVINAMAALAW 359 (366)
Q Consensus 342 ~~~v~vdDva~ai~~~~~ 359 (366)
.-+...+|+|++++.++.
T Consensus 213 ~R~g~p~eva~~v~fL~S 230 (250)
T d1ydea1 213 GRMGQPAEVGAAAVFLAS 230 (250)
T ss_dssp SSCBCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 347789999999999875
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=99.63 E-value=3.3e-15 Score=137.56 Aligned_cols=209 Identities=11% Similarity=0.078 Sum_probs=143.8
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|+++||||++.||.+++++|++.| .+|++.+|+.+.. ++..+. +..
T Consensus 3 l~gK~~lITGas~GIG~aia~~la~~G---a~V~i~~r~~~~~---~~~~~~--------l~~----------------- 51 (251)
T d1vl8a_ 3 LRGRVALVTGGSRGLGFGIAQGLAEAG---CSVVVASRNLEEA---SEAAQK--------LTE----------------- 51 (251)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHH---HHHHHH--------HHH-----------------
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHHH---HHHHHH--------HHH-----------------
Confidence 679999999999999999999999999 8999999974321 111111 100
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
....++.++.+|+++++ ++..+++ ++|++|||||... ..+.++
T Consensus 52 -----------------~~g~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~ 108 (251)
T d1vl8a_ 52 -----------------KYGVETMAFRCDVSNYE------EVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFR 108 (251)
T ss_dssp -----------------HHCCCEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHH
T ss_pred -----------------HhCCcEEEEEccCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHH
Confidence 11357888999999986 6665553 6899999999742 235678
Q ss_pred HHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCccee-cCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 192 TAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCN-CDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~-~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
..+++|+.++..+.+.+.+. .+-.++|.+||.... ...
T Consensus 109 ~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~~~~~~~~-------------------------------------- 150 (251)
T d1vl8a_ 109 QVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVTM-------------------------------------- 150 (251)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCCCS--------------------------------------
T ss_pred HHHHhhhhhhhhhhhhhhhcccccccccccccccchhccccC--------------------------------------
Confidence 89999999998888865442 244689999986432 111
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
.....|+.+|...+.+.+... +|+++..+.||.|-.+.... ............... ...
T Consensus 151 ~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~T~~~~~-------~~~~~~~~~~~~~~~---------pl~ 214 (251)
T d1vl8a_ 151 PNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEA-------VFSDPEKLDYMLKRI---------PLG 214 (251)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHH-------HHTCHHHHHHHHHTC---------TTS
T ss_pred ccccchHHHHHhHHHHHHHHHHHhcccCeEEEEEeeCcccCHHHHh-------ccCCHHHHHHHHhcC---------CCC
Confidence 011579999999999887765 78999999999997654321 110011222222211 122
Q ss_pred CcccHHHHHHHHHHHHHhhh
Q psy17528 343 DVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~~ 362 (366)
-+...+|+|++++.++...+
T Consensus 215 R~~~pedvA~~v~fL~S~~a 234 (251)
T d1vl8a_ 215 RTGVPEDLKGVAVFLASEEA 234 (251)
T ss_dssp SCBCGGGGHHHHHHHHSGGG
T ss_pred CCCCHHHHHHHHHHHhCchh
Confidence 35667899999998875443
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=99.63 E-value=1.9e-15 Score=139.77 Aligned_cols=210 Identities=16% Similarity=0.117 Sum_probs=143.0
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|+++||||++.||.+++++|++.| .+|++.+|+... .+++.+.+. .
T Consensus 6 L~GK~alITGas~GIG~aia~~la~~G---a~V~~~~r~~~~---l~~~~~~~~--------~----------------- 54 (259)
T d2ae2a_ 6 LEGCTALVTGGSRGIGYGIVEELASLG---ASVYTCSRNQKE---LNDCLTQWR--------S----------------- 54 (259)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHHHH--------H-----------------
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHH---HHHHHHHHH--------h-----------------
Confidence 579999999999999999999999999 899999997432 112222111 1
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh--------CcCEEEEcCcccC-------hhhhH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS--------QTTIIFHIAATVR-------FDEHI 190 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~--------~~d~Vih~a~~~~-------~~~~~ 190 (366)
...++.++.+|+++++ ++..+++ .+|++|||||... ..+++
T Consensus 55 ------------------~g~~~~~~~~Dv~~~~------~v~~~~~~~~~~~~~~idilvnnAG~~~~~~~~~~~~e~~ 110 (259)
T d2ae2a_ 55 ------------------KGFKVEASVCDLSSRS------ERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDY 110 (259)
T ss_dssp ------------------TTCEEEEEECCTTCHH------HHHHHHHHHHHHTTTCCCEEEECCCCCCCCCGGGCCHHHH
T ss_pred ------------------cCCCceEEEeeCCCHH------HHHHHHHHHHHHhCCCceEEEECCceeccCccccCCHHHH
Confidence 2357788999999976 5554432 4799999999753 23467
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 191 RTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
+..+++|+.++..+.+.+.+. .+..++|++||.......
T Consensus 111 ~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~-------------------------------------- 152 (259)
T d2ae2a_ 111 SLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAV-------------------------------------- 152 (259)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTSCC--------------------------------------
T ss_pred HHHHhcccceeEEEEeeccchhhhhccccccccccccccccc--------------------------------------
Confidence 889999999988887765432 355689999998654211
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
+....|+.+|...+.+.+... ++++++.|.||.|-.+.... .. .-......+.+..... ...
T Consensus 153 ~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~---~~-~~~~~~~~~~~~~~~~---------pl~ 219 (259)
T d2ae2a_ 153 PYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEM---TI-QDPEQKENLNKLIDRC---------ALR 219 (259)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHH---HT-TSHHHHHHHHHHHHTS---------TTC
T ss_pred ccccchHHHHHHHHHHHHHHHHHhCcCceEEEEeeeCcccCHHHHh---hh-hchhhHHHHHHHHhcC---------CCC
Confidence 112689999999998887766 78999999999987642210 00 0000111222222211 122
Q ss_pred CcccHHHHHHHHHHHHHhh
Q psy17528 343 DVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~ 361 (366)
-+...+|+|++++.++...
T Consensus 220 R~g~pedvA~~v~fL~S~~ 238 (259)
T d2ae2a_ 220 RMGEPKELAAMVAFLCFPA 238 (259)
T ss_dssp SCBCHHHHHHHHHHHHSGG
T ss_pred CCcCHHHHHHHHHHHhCch
Confidence 3677899999999988544
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=99.63 E-value=3.4e-15 Score=137.70 Aligned_cols=164 Identities=16% Similarity=0.181 Sum_probs=124.7
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|+++||||++.||.+++++|++.| .+|++.+|+.+ ++.+...+
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~G---a~V~~~~r~~~------~l~~~~~~------------------------- 48 (256)
T d1k2wa_ 3 LDGKTALITGSARGIGRAFAEAYVREG---ARVAIADINLE------AARATAAE------------------------- 48 (256)
T ss_dssp TTTEEEEEETCSSHHHHHHHHHHHHTT---EEEEEEESCHH------HHHHHHHH-------------------------
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHH------HHHHHHHH-------------------------
Confidence 679999999999999999999999999 89999999742 22221111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
...++.++.+|+++++ ++..+++ .+|++|||||... ..+.++
T Consensus 49 ------------------~~~~~~~~~~Dvt~~~------~v~~~~~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~ 104 (256)
T d1k2wa_ 49 ------------------IGPAACAIALDVTDQA------SIDRCVAELLDRWGSIDILVNNAALFDLAPIVEITRESYD 104 (256)
T ss_dssp ------------------HCTTEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHH
T ss_pred ------------------hCCceEEEEeeCCCHH------HHHHHHHHHHHHhCCccEEEeecccccccccccCCHHHHH
Confidence 1256788999999987 6666553 6899999999753 235678
Q ss_pred HHHHHHHHHHHHHHHHHHh----cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 192 TAYNINVKGTQTILALAKR----MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~----~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
..+++|+.++..+.+.+.. .+...++|++||.......
T Consensus 105 ~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~-------------------------------------- 146 (256)
T d1k2wa_ 105 RLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRRGE-------------------------------------- 146 (256)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC--------------------------------------
T ss_pred hhhceeeeccccchhhccchhHHhccCCccccccchhhcccc--------------------------------------
Confidence 8999999998888775432 2245689999998654221
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCC
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTL 305 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~ 305 (366)
+....|+.+|...+.+.+... +|++++.+.||.|-.+.
T Consensus 147 ~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~i~T~~ 189 (256)
T d1k2wa_ 147 ALVGVYCATKAAVISLTQSAGLNLIRHGINVNAIAPGVVDGEH 189 (256)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTT
T ss_pred ccccchhhhhhHHHHHHHHHHHHhcccCeEEEEEecCCCCchh
Confidence 112689999999999887766 78999999999888764
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.62 E-value=9.6e-15 Score=135.89 Aligned_cols=216 Identities=13% Similarity=0.081 Sum_probs=141.5
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|+++||||++.||.+++++|++.| .+|++.+|+.+. .+.+.+.+. .
T Consensus 2 L~gK~alITGas~GIG~aia~~la~~G---a~V~~~~r~~~~---l~~~~~~i~--------~----------------- 50 (274)
T d1xhla_ 2 FSGKSVIITGSSNGIGRSAAVIFAKEG---AQVTITGRNEDR---LEETKQQIL--------K----------------- 50 (274)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHHHH--------H-----------------
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEECCHHH---HHHHHHHHH--------H-----------------
Confidence 689999999999999999999999999 899999997432 122222111 1
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC---------hhhh
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR---------FDEH 189 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~---------~~~~ 189 (366)
......++.++.+|+++++ ++..+++ .+|++|||||... ..+.
T Consensus 51 ---------------~~~~~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~ 109 (274)
T d1xhla_ 51 ---------------AGVPAEKINAVVADVTEAS------GQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVEL 109 (274)
T ss_dssp ---------------TTCCGGGEEEEECCTTSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCSCCGGGSCHHH
T ss_pred ---------------cCCCCcceEEEEeeCCCHH------HHHHHHHHHHHHcCCceEEEeecccccccccccccCCHHH
Confidence 1112357889999999987 6665553 6899999999631 1235
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 190 IRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 190 ~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
++..+++|+.++..+.+.+.+. .+..+++++||........
T Consensus 110 ~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~ii~~ss~~~~~~~~------------------------------------ 153 (274)
T d1xhla_ 110 YQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQAHS------------------------------------ 153 (274)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSSSCCT------------------------------------
T ss_pred HHHHHhhcccccccccccccccccccccccccchhhhhccccCC------------------------------------
Confidence 7888999999988887765432 2445677777755432110
Q ss_pred CCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcc
Q psy17528 267 GGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNIS 341 (366)
Q Consensus 267 ~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~ 341 (366)
....|+.+|...+.+.+... +|++++.|.||.|-.+........ .....-......... ..-..
T Consensus 154 --~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~----~~~~~~~~~~~~~~~-----~~iPl 222 (274)
T d1xhla_ 154 --GYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLP----ETASDKLYSFIGSRK-----ECIPV 222 (274)
T ss_dssp --TSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCC----HHHHHHHHHHHHHCT-----TTCTT
T ss_pred --CCceehhhhhHHHHHHHHHHHHHhHhCCceeeeccCCCcCchhhhhccc----chhhHHHHHHHHHHH-----cCCCC
Confidence 11579999999999887665 789999999999976532110000 000111111111100 00112
Q ss_pred cCcccHHHHHHHHHHHHHh
Q psy17528 342 MDVVPGDRVINAMAALAWY 360 (366)
Q Consensus 342 ~~~v~vdDva~ai~~~~~~ 360 (366)
.-+...+|+|++++.++..
T Consensus 223 gR~g~pediA~~v~fL~S~ 241 (274)
T d1xhla_ 223 GHCGKPEEIANIIVFLADR 241 (274)
T ss_dssp SSCBCHHHHHHHHHHHHCH
T ss_pred CCCcCHHHHHHHHHHHcCC
Confidence 3467899999999998853
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=99.62 E-value=1.3e-14 Score=132.71 Aligned_cols=197 Identities=14% Similarity=0.183 Sum_probs=137.9
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCc----cEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQI----RKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~----~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
+.||||||++.||.+++++|.+.|..+ ..|++.+|+... .+++.+.
T Consensus 2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~---l~~~~~~--------------------------- 51 (240)
T d2bd0a1 2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAAD---LEKISLE--------------------------- 51 (240)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHH---HHHHHHH---------------------------
T ss_pred CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHH---HHHHHHH---------------------------
Confidence 358999999999999999999998321 137888886421 1222221
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHI 190 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~ 190 (366)
......++.++.+|+++.+ ++..+++ .+|++|||||... ..+.+
T Consensus 52 ----------------~~~~g~~~~~~~~Dvt~~~------~v~~~~~~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~ 109 (240)
T d2bd0a1 52 ----------------CRAEGALTDTITADISDMA------DVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDF 109 (240)
T ss_dssp ----------------HHTTTCEEEEEECCTTSHH------HHHHHHHHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHH
T ss_pred ----------------HHhcCCcEEEEEecCCCHH------HHHHHHHHHHHHcCCcceeecccccccCCccccCCHHHH
Confidence 1112457889999999987 6665553 5899999999753 23567
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 191 RTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
+..+++|+.++..+.+.+.+. .+-.++|++||.......
T Consensus 110 ~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~-------------------------------------- 151 (240)
T d2bd0a1 110 DYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKAF-------------------------------------- 151 (240)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC--------------------------------------
T ss_pred hhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechhhcCCC--------------------------------------
Confidence 889999999988877765431 245689999998654221
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCccc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISM 342 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 342 (366)
+....|+.+|...+.+.+... +|++++.+.||.|-.+.....+ .+...
T Consensus 152 ~~~~~Y~asK~al~~lt~~la~el~~~gIrvn~i~PG~v~T~~~~~~~---------------------------~~~~~ 204 (240)
T d2bd0a1 152 RHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKVD---------------------------DEMQA 204 (240)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCCC---------------------------STTGG
T ss_pred CCChHHHHHHHHHHHHHHHHHHHhCcCCeEEEEeeeCcccCchhhhcC---------------------------HhhHh
Confidence 112689999998888887755 7899999999999765332111 01112
Q ss_pred CcccHHHHHHHHHHHHHhhh
Q psy17528 343 DVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~~ 362 (366)
.+...+|+|++++.++..+.
T Consensus 205 ~~~~PedvA~~v~~l~s~~~ 224 (240)
T d2bd0a1 205 LMMMPEDIAAPVVQAYLQPS 224 (240)
T ss_dssp GSBCHHHHHHHHHHHHTSCT
T ss_pred cCCCHHHHHHHHHHHHcCCc
Confidence 34557999999999887764
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=7e-15 Score=134.89 Aligned_cols=168 Identities=17% Similarity=0.144 Sum_probs=124.1
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
+.++||+++||||++.||.+++++|.+.| .+|++.+|+... .+.+.+.+.
T Consensus 3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G---~~V~l~~r~~~~---l~~~~~~~~------------------------ 52 (244)
T d1yb1a_ 3 KSVTGEIVLITGAGHGIGRLTAYEFAKLK---SKLVLWDINKHG---LEETAAKCK------------------------ 52 (244)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHHHH------------------------
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEECCHHH---HHHHHHHHH------------------------
Confidence 34779999999999999999999999999 899999997432 122222111
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhh
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEH 189 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~ 189 (366)
....++.++.+|+++.+ .+..+++ .+|++|||||... ....
T Consensus 53 -------------------~~~~~~~~~~~Dvs~~~------~v~~~~~~i~~~~g~idilinnag~~~~~~~~~~~~~~ 107 (244)
T d1yb1a_ 53 -------------------GLGAKVHTFVVDCSNRE------DIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQ 107 (244)
T ss_dssp -------------------HTTCCEEEEECCTTCHH------HHHHHHHHHHHHTCCCSEEEECCCCCCCCCCGGGHHHH
T ss_pred -------------------hcCCcEEEEEeeCCCHH------HHHHHHHHHHHHcCCCceeEeeccccccccccccchhH
Confidence 12357889999999987 5555553 5899999999753 1234
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 190 IRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 190 ~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
++..+++|+.++..+.+.+.+. .+..++|.+||..+......
T Consensus 108 ~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~~~~~~~----------------------------------- 152 (244)
T d1yb1a_ 108 IEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSVPF----------------------------------- 152 (244)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CCCHHH-----------------------------------
T ss_pred HHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchhcCCCCC-----------------------------------
Confidence 6788999999988887765431 35568999999876522110
Q ss_pred CCCCchHHHHHHHHHHHHHHhc--------CCCCEEEEecCccccC
Q psy17528 267 GGKPNSYTLTKATAEDLVRQVG--------HELPICVLRPSIVFPT 304 (366)
Q Consensus 267 ~~~~~~Y~~sK~~~E~~l~~~~--------~gl~~~ilRp~~v~G~ 304 (366)
...|+.+|...+.+.+... +|+.++.+.||.|-.+
T Consensus 153 ---~~~Y~asKaal~~~~~~La~El~~~~~~gI~V~~i~PG~v~T~ 195 (244)
T d1yb1a_ 153 ---LLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTG 195 (244)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHC
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEcCCCCCh
Confidence 1679999999888876654 4799999999988664
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=99.61 E-value=9.3e-15 Score=134.69 Aligned_cols=167 Identities=11% Similarity=0.124 Sum_probs=123.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|+||||||++.||.+++++|++.| .+|+++.|+.......+.+...
T Consensus 3 l~gK~vlITGgs~GIG~~~A~~la~~G---~~vii~~r~~~~~~~~~~~~~~---------------------------- 51 (254)
T d1sbya1 3 LTNKNVIFVAALGGIGLDTSRELVKRN---LKNFVILDRVENPTALAELKAI---------------------------- 51 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTC---CSEEEEEESSCCHHHHHHHHHH----------------------------
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCC---CEEEEEECCcccHHHHHHHHhh----------------------------
Confidence 679999999999999999999999999 7888888876543222222111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH-------hCcCEEEEcCcccChhhhHHHHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI-------SQTTIIFHIAATVRFDEHIRTAYNINV 198 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~-------~~~d~Vih~a~~~~~~~~~~~~~~~nv 198 (366)
. ...++.++.+|+.... .++.+++ .++|++|||||... ...++..+++|+
T Consensus 52 ---------------~--~~~~~~~~~~d~~~~~-----~~~~~~~~~~~~~~g~iDilvnnAG~~~-~~~~~~~~~vNl 108 (254)
T d1sbya1 52 ---------------N--PKVNITFHTYDVTVPV-----AESKKLLKKIFDQLKTVDILINGAGILD-DHQIERTIAINF 108 (254)
T ss_dssp ---------------C--TTSEEEEEECCTTSCH-----HHHHHHHHHHHHHHSCCCEEEECCCCCC-TTCHHHHHHHHT
T ss_pred ---------------C--CCCCEEEEEeecCCCH-----HHHHHHHHHHHHHcCCCCEEEeCCCCCC-HHHHHHHHHHHh
Confidence 1 1257889999998432 1343333 36899999999754 567788999999
Q ss_pred HHHHHHHHHHHhc------CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCch
Q psy17528 199 KGTQTILALAKRM------KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNS 272 (366)
Q Consensus 199 ~~~~~ll~~a~~~------~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (366)
.++..+.+++.+. +...++|++||...+... +....
T Consensus 109 ~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~~~--------------------------------------~~~~~ 150 (254)
T d1sbya1 109 TGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAI--------------------------------------HQVPV 150 (254)
T ss_dssp HHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCC--------------------------------------TTSHH
T ss_pred HHHHHHHHHHHHHhhhcccCCCceEEEEechhhccCC--------------------------------------CCCHH
Confidence 9988887766541 234679999998764221 11267
Q ss_pred HHHHHHHHHHHHHHhc-----CCCCEEEEecCccccC
Q psy17528 273 YTLTKATAEDLVRQVG-----HELPICVLRPSIVFPT 304 (366)
Q Consensus 273 Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~ 304 (366)
|+.+|.....+.+... ++++++.|.||.|..+
T Consensus 151 Y~asKaal~~~t~~la~el~~~gIrVn~I~PG~v~T~ 187 (254)
T d1sbya1 151 YSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTP 187 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESH
T ss_pred HHHHHHHHHHHHHHHHhhccccCeEEEEEEeCCCcCc
Confidence 9999999988887766 7899999999999865
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=9.3e-15 Score=134.83 Aligned_cols=212 Identities=16% Similarity=0.130 Sum_probs=140.4
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
+.+++|++|||||++.||.++++.|++.| .+|++..|+.+. .+++.+.+. ..
T Consensus 6 ~~lk~Kv~lITGas~GIG~aiA~~la~~G---~~Vv~~~r~~~~---l~~~~~~l~--------~~-------------- 57 (257)
T d1xg5a_ 6 ERWRDRLALVTGASGGIGAAVARALVQQG---LKVVGCARTVGN---IEELAAECK--------SA-------------- 57 (257)
T ss_dssp GGGTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHHHH--------HT--------------
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHH---HHHHHHHHH--------hc--------------
Confidence 45889999999999999999999999999 899999997431 222222221 11
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhh
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEH 189 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~ 189 (366)
....++.++.+|+++++ ++..+++ ++|++|||||... ....
T Consensus 58 -------------------~~~~~~~~~~~Dls~~~------~v~~~v~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~ 112 (257)
T d1xg5a_ 58 -------------------GYPGTLIPYRCDLSNEE------DILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSG 112 (257)
T ss_dssp -------------------TCSSEEEEEECCTTCHH------HHHHHHHHHHHHHCCCSEEEECCCCCCCCCTTTCCHHH
T ss_pred -------------------CCCceEEEEEccCCCHH------HHHHHHHHHHHhcCCCCEEEecccccCCCccccccHHH
Confidence 11247888999999976 6666553 6899999999753 2456
Q ss_pred HHHHHHHHHHHHHHHHHHHH----hcC-CCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhc
Q psy17528 190 IRTAYNINVKGTQTILALAK----RMK-GLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEH 264 (366)
Q Consensus 190 ~~~~~~~nv~~~~~ll~~a~----~~~-~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 264 (366)
++..+++|+.+...+.+.+. +.+ .-.++|++||........ .+
T Consensus 113 ~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~p--------~~------------------------ 160 (257)
T d1xg5a_ 113 WKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVLP--------LS------------------------ 160 (257)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCCS--------CG------------------------
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcCCCC--------Cc------------------------
Confidence 78899999888877666543 322 246899999986542110 00
Q ss_pred ccCCCCchHHHHHHHHHHHHHHhc-------CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCC
Q psy17528 265 IIGGKPNSYTLTKATAEDLVRQVG-------HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTD 337 (366)
Q Consensus 265 ~~~~~~~~Y~~sK~~~E~~l~~~~-------~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~ 337 (366)
....|+.+|...+.+.+.+. +++.+..+-||.+-.+.... +.+.. .+ .....
T Consensus 161 ----~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~PG~i~t~~~~~---~~~~~---~~---~~~~~-------- 219 (257)
T d1xg5a_ 161 ----VTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFK---LHDKD---PE---KAAAT-------- 219 (257)
T ss_dssp ----GGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHH---HTTTC---HH---HHHHH--------
T ss_pred ----ccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEeCCCCCChhhhh---cChhh---HH---HHHhc--------
Confidence 01569999999988875432 78999999998775432110 00000 00 00000
Q ss_pred CCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 338 PNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 338 ~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
.....++..+|+|++++.++..++
T Consensus 220 -~~~~r~~~pedvA~~v~fL~s~~a 243 (257)
T d1xg5a_ 220 -YEQMKCLKPEDVAEAVIYVLSTPA 243 (257)
T ss_dssp -HC---CBCHHHHHHHHHHHHHSCT
T ss_pred -CCCCCCcCHHHHHHHHHHHhCChh
Confidence 112346789999999999987764
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.61 E-value=7.1e-15 Score=135.40 Aligned_cols=210 Identities=13% Similarity=0.097 Sum_probs=141.1
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
+.+++|+++||||++.||.+++++|++.| .+|++.+|++.. .+++.+.
T Consensus 2 nrL~gK~alITGas~GIG~aia~~la~~G---a~V~~~~~~~~~---~~~~~~~-------------------------- 49 (253)
T d1hxha_ 2 NRLQGKVALVTGGASGVGLEVVKLLLGEG---AKVAFSDINEAA---GQQLAAE-------------------------- 49 (253)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEECSCHHH---HHHHHHH--------------------------
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHH---HHHHHHH--------------------------
Confidence 45789999999999999999999999999 899999986421 1122111
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhh
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEH 189 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~ 189 (366)
...+..++.+|+++.+ ++..+++ .+|++|||||... ...+
T Consensus 50 --------------------~~~~~~~~~~Dv~~~~------~~~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~ 103 (253)
T d1hxha_ 50 --------------------LGERSMFVRHDVSSEA------DWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLED 103 (253)
T ss_dssp --------------------HCTTEEEECCCTTCHH------HHHHHHHHHHHHHCSCCEEEECCCCCCCBCTTTCCHHH
T ss_pred --------------------hCCCeEEEEeecCCHH------HHHHHHHHHHHHhCCCCeEEecccccCCCCcccCCHHH
Confidence 1246778899999876 5555553 6899999999753 2356
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc--CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 190 IRTAYNINVKGTQTILALAKRM--KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 190 ~~~~~~~nv~~~~~ll~~a~~~--~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
++..+++|+.++..+.+.+.+. ..-.++|++||.......
T Consensus 104 ~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~~~~~-------------------------------------- 145 (253)
T d1hxha_ 104 FSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWLPI-------------------------------------- 145 (253)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSCC--------------------------------------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhhhcCc--------------------------------------
Confidence 7889999999988887765442 233689999998654221
Q ss_pred CCCchHHHHHHHHHHHHHHhc-------CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCc
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-------HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNI 340 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-------~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~ 340 (366)
+....|+.+|...+.+.+... ++++++.|.||.|..+.... .+.+.. ..+...... ....
T Consensus 146 ~~~~~Y~asKaal~~lt~~lA~e~~~~g~~IrVN~I~PG~i~T~~~~~--~~~~~~------~~~~~~~~~-----~~~~ 212 (253)
T d1hxha_ 146 EQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQA--SLPKGV------SKEMVLHDP-----KLNR 212 (253)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHH--HSCTTC------CHHHHBCBT-----TTBT
T ss_pred cccccccchhHHHHHHHHHHHHHHhhcCCCEEEEEEeECCCcCHhHHh--hCcchh------hHHHHHhCc-----cccc
Confidence 111679999999888887554 35899999999987642100 000000 000111000 0111
Q ss_pred ccCcccHHHHHHHHHHHHHhhh
Q psy17528 341 SMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 341 ~~~~v~vdDva~ai~~~~~~~~ 362 (366)
.-.+...+|+|++++.++...+
T Consensus 213 ~gr~~~pedvA~~v~fL~S~~s 234 (253)
T d1hxha_ 213 AGRAYMPERIAQLVLFLASDES 234 (253)
T ss_dssp TCCEECHHHHHHHHHHHHSGGG
T ss_pred cCCCCCHHHHHHHHHHHhChhh
Confidence 2346778999999999885443
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.61 E-value=1.2e-14 Score=135.10 Aligned_cols=218 Identities=11% Similarity=0.094 Sum_probs=140.3
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++|++|||||++.||.+++++|.+.| .+|++.+|+... .+++.+.+. .
T Consensus 2 rL~gK~alVTGas~GIG~aia~~la~~G---a~V~l~~r~~~~---l~~~~~~l~--------~---------------- 51 (272)
T d1xkqa_ 2 RFSNKTVIITGSSNGIGRTTAILFAQEG---ANVTITGRSSER---LEETRQIIL--------K---------------- 51 (272)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHHHH--------T----------------
T ss_pred CCCCCEEEEeCcCcHHHHHHHHHHHHCC---CEEEEEECCHHH---HHHHHHHHH--------h----------------
Confidence 4789999999999999999999999999 899999997432 122222111 1
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-----------
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF----------- 186 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~----------- 186 (366)
......++.++.+|+++++ ++..+++ ++|++|||||....
T Consensus 52 ----------------~~~~~~~~~~~~~Dvs~~~------~v~~~~~~~~~~~g~iDilvnnAG~~~~~~~~~~~~d~~ 109 (272)
T d1xkqa_ 52 ----------------SGVSEKQVNSVVADVTTED------GQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQG 109 (272)
T ss_dssp ----------------TTCCGGGEEEEECCTTSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCCGGGSC
T ss_pred ----------------cCCCCCceEEEEccCCCHH------HHHHHHHHHHHHhCCceEEEeCCcccCcccccccchhcc
Confidence 1112357889999999986 6665553 68999999997421
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhc--CCCcEEEEeeCc-ceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhh
Q psy17528 187 DEHIRTAYNINVKGTQTILALAKRM--KGLKSFVHVSTA-YCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNE 263 (366)
Q Consensus 187 ~~~~~~~~~~nv~~~~~ll~~a~~~--~~~~~~v~iSS~-~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 263 (366)
...++..+++|+.++..+.+.+.+. .+...+|.++|. ......
T Consensus 110 ~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~Ss~a~~~~~---------------------------------- 155 (272)
T d1xkqa_ 110 IDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGPQAQ---------------------------------- 155 (272)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSSCC----------------------------------
T ss_pred HHHHHHHHHhhhhHHHHHHHhhcccccccCCccccccchhccccCC----------------------------------
Confidence 1246778899999988887765432 122356666554 332111
Q ss_pred cccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCC
Q psy17528 264 HIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDP 338 (366)
Q Consensus 264 ~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~ 338 (366)
+....|+.+|...+.+.+... +|++++.|.||.|-.+........ .....-......... ..
T Consensus 156 ----~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~----~~~~~~~~~~~~~~~-----~~ 222 (272)
T d1xkqa_ 156 ----PDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMP----DQASQKFYNFMASHK-----EC 222 (272)
T ss_dssp ----CSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCC----HHHHHHHHHHHHHCT-----TT
T ss_pred ----CCcchhhhHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcchhhhccCCc----hHHHHHHHHHHHHHh-----cC
Confidence 112679999999998887766 789999999999876532111000 000011111111000 11
Q ss_pred CcccCcccHHHHHHHHHHHHHhh
Q psy17528 339 NISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 339 ~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
....-+...+|+|++++.++...
T Consensus 223 ~PlgR~g~pediA~~v~fL~S~~ 245 (272)
T d1xkqa_ 223 IPIGAAGKPEHIANIILFLADRN 245 (272)
T ss_dssp CTTSSCBCHHHHHHHHHHHHCHH
T ss_pred CCCCCCcCHHHHHHHHHHHhCcc
Confidence 11234778899999999988543
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.61 E-value=8.6e-15 Score=134.13 Aligned_cols=203 Identities=12% Similarity=0.155 Sum_probs=140.5
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
+.||||||++.||.+++++|++.| .+|++.+++... ..+.+.+.++ .
T Consensus 2 pV~lITGas~GIG~a~a~~la~~G---a~V~i~~~~~~~--~~~~~~~~~~--------~-------------------- 48 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAG---CKVLVNYARSAK--AAEEVSKQIE--------A-------------------- 48 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSCHH--HHHHHHHHHH--------H--------------------
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCCHH--HHHHHHHHHH--------H--------------------
Confidence 479999999999999999999999 888877654321 2222322221 1
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIRTAY 194 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~~~~ 194 (366)
...++.++.+|+++.+ ++.++++ ++|++|||||... ....++..+
T Consensus 49 ---------------~g~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~iDiLVnnAg~~~~~~~~~~~~~~~~~~~ 107 (244)
T d1edoa_ 49 ---------------YGGQAITFGGDVSKEA------DVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVI 107 (244)
T ss_dssp ---------------HTCEEEEEECCTTSHH------HHHHHHHHHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHH
T ss_pred ---------------cCCcEEEEeCCCCCHH------HHHHHHHHHHHHcCCCCccccccccccccchhccchHHHHHHH
Confidence 1357888999999987 6665553 6899999999753 235678899
Q ss_pred HHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCc
Q psy17528 195 NINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPN 271 (366)
Q Consensus 195 ~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (366)
++|+.++..+.+.+.+. .+-.++|++||..+.... +...
T Consensus 108 ~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~--------------------------------------~~~~ 149 (244)
T d1edoa_ 108 DLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGN--------------------------------------IGQA 149 (244)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC--------------------------------------TTCH
T ss_pred hhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChhhcCCC--------------------------------------CCCH
Confidence 99999988887765431 245699999998654221 1126
Q ss_pred hHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCccc
Q psy17528 272 SYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVP 346 (366)
Q Consensus 272 ~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~ 346 (366)
.|+.+|...+.+.+... +|++++.|.||.|-.+.... +. .......... ....-+..
T Consensus 150 ~Y~asKaal~~ltk~lA~el~~~gIrvN~I~PG~i~T~~~~~-------~~--~~~~~~~~~~---------~pl~R~~~ 211 (244)
T d1edoa_ 150 NYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAK-------LG--EDMEKKILGT---------IPLGRTGQ 211 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHT-------TC--HHHHHHHHTS---------CTTCSCBC
T ss_pred HHHHHHHHHHHChHHHHHHHhhhCcEEEEEecceeccHHHHH-------hh--HHHHHHHHhc---------CCCCCCcC
Confidence 89999999999887766 78999999999986542211 11 1112222211 11234678
Q ss_pred HHHHHHHHHHHHHhh
Q psy17528 347 GDRVINAMAALAWYF 361 (366)
Q Consensus 347 vdDva~ai~~~~~~~ 361 (366)
.+|+|++++.++.++
T Consensus 212 p~dvA~~v~fLa~S~ 226 (244)
T d1edoa_ 212 PENVAGLVEFLALSP 226 (244)
T ss_dssp HHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHCCc
Confidence 899999999986544
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=99.60 E-value=2.3e-14 Score=130.21 Aligned_cols=198 Identities=10% Similarity=0.052 Sum_probs=136.1
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|++|||||++.||.+++++|++.| .+|++.+|+++ .+.+
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~G---a~V~~~~r~~~------~l~~----------------------------- 43 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEG---AEVTICARNEE------LLKR----------------------------- 43 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHH-----------------------------
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEECCHH------HHHh-----------------------------
Confidence 689999999999999999999999999 89999999732 1111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccC-------hhhhHHHHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVR-------FDEHIRTAYNINV 198 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~-------~~~~~~~~~~~nv 198 (366)
...+++.+|+++. ...+.+-+.++|++|||||... ....++..+++|+
T Consensus 44 --------------------~~~~~~~~Dv~~~-----~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~n~ 98 (234)
T d1o5ia_ 44 --------------------SGHRYVVCDLRKD-----LDLLFEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLF 98 (234)
T ss_dssp --------------------TCSEEEECCTTTC-----HHHHHHHSCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHT
T ss_pred --------------------cCCcEEEcchHHH-----HHHHHHHhCCCcEEEecccccCCcchhhhhhHHHHHHhhhhh
Confidence 1234677888763 2244445568999999999642 2345678889999
Q ss_pred HHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHH
Q psy17528 199 KGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTL 275 (366)
Q Consensus 199 ~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~ 275 (366)
.++..+.+.+.+. .+..++|.+||....... .....|..
T Consensus 99 ~~~~~~~~~~~~~m~~~~~G~ii~i~S~~~~~~~--------------------------------------~~~~~Y~a 140 (234)
T d1o5ia_ 99 LNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPI--------------------------------------ENLYTSNS 140 (234)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC--------------------------------------TTBHHHHH
T ss_pred hhhhhhhhcccccccccccccccccccccccccc--------------------------------------cccccchh
Confidence 9887777755321 245689999997544221 11267999
Q ss_pred HHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHH
Q psy17528 276 TKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRV 350 (366)
Q Consensus 276 sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDv 350 (366)
+|...+.+.+... +|+++..|.||.+-.+.... . .. .......... ....-+...+|+
T Consensus 141 sKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~---~---~~--~~~~~~~~~~---------~pl~R~~~pedi 203 (234)
T d1o5ia_ 141 ARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKE---L---LS--EEKKKQVESQ---------IPMRRMAKPEEI 203 (234)
T ss_dssp HHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHH---H---SC--HHHHHHHHTT---------STTSSCBCHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCeEEeecccCccchhhhhh---h---cC--HHHHHHHHhc---------CCCCCCcCHHHH
Confidence 9999888877665 78999999999987653210 0 00 0111111111 123347789999
Q ss_pred HHHHHHHHHhh
Q psy17528 351 INAMAALAWYF 361 (366)
Q Consensus 351 a~ai~~~~~~~ 361 (366)
|+++++++...
T Consensus 204 A~~v~fL~S~~ 214 (234)
T d1o5ia_ 204 ASVVAFLCSEK 214 (234)
T ss_dssp HHHHHHHHSGG
T ss_pred HHHHHHHhChh
Confidence 99999988543
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.60 E-value=1.6e-14 Score=132.87 Aligned_cols=210 Identities=14% Similarity=0.074 Sum_probs=140.0
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
|.+|||||++.||.+++++|++.| .+|++.+|+++. .+.+.+.++ .
T Consensus 2 KValITGas~GIG~aia~~la~~G---a~V~~~~r~~~~---l~~~~~~i~--------~-------------------- 47 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDG---FAVAIADYNDAT---AKAVASEIN--------Q-------------------- 47 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHHHH--------H--------------------
T ss_pred CEEEEcCCccHHHHHHHHHHHHCC---CEEEEEECCHHH---HHHHHHHHH--------h--------------------
Confidence 457999999999999999999999 899999997432 122222111 1
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIRTAY 194 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~~~~ 194 (366)
...++.++.+|+++++ ++..+++ .+|++|||||... ..+.++..+
T Consensus 48 ---------------~g~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~ 106 (255)
T d1gega_ 48 ---------------AGGHAVAVKVDVSDRD------QVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVY 106 (255)
T ss_dssp ---------------TTCCEEEEECCTTSHH------HHHHHHHHHHHHTTCCCEEEECCCCCCCBCGGGCCHHHHHHHH
T ss_pred ---------------cCCcEEEEEeeCCCHH------HHHHHHHHHHHHhCCccEEEecccccccCcHHHhhhhhhhhhh
Confidence 2357888999999987 6665553 6899999999753 235678899
Q ss_pred HHHHHHHHHHHHHHHh----cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCC
Q psy17528 195 NINVKGTQTILALAKR----MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKP 270 (366)
Q Consensus 195 ~~nv~~~~~ll~~a~~----~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (366)
++|+.++..+.+.+.+ .+...+++++||....... +..
T Consensus 107 ~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~--------------------------------------~~~ 148 (255)
T d1gega_ 107 NINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGN--------------------------------------PEL 148 (255)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC--------------------------------------TTB
T ss_pred hhcccchhhhhhhhcchhhhhccccccccccchhhcccC--------------------------------------ccc
Confidence 9999998888776532 2344679999997654221 112
Q ss_pred chHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcc---eeecCCCCccc
Q psy17528 271 NSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLI---RVVQTDPNISM 342 (366)
Q Consensus 271 ~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~l~~~~~~~~ 342 (366)
..|+.+|...+.+.+... +|++++.|.||.|-.+... ....-......... ..-........
T Consensus 149 ~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~pl~ 218 (255)
T d1gega_ 149 AVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWA----------EIDRQVSEAAGKPLGYGTAEFAKRITLG 218 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHH----------HHHHHHHHHHTCCTTHHHHHHHTTCTTC
T ss_pred ccchhCHHHHHhhHHHHHHHhhhhCcEEEEEecCcccChHHh----------hhhhhhHhhhcccchhHHHHHHhcCCCC
Confidence 679999999998887765 7899999999998654210 00000011100000 00000111233
Q ss_pred CcccHHHHHHHHHHHHHhh
Q psy17528 343 DVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 343 ~~v~vdDva~ai~~~~~~~ 361 (366)
-+...+|+|++++.++...
T Consensus 219 R~~~peevA~~v~fL~S~~ 237 (255)
T d1gega_ 219 RLSEPEDVAACVSYLASPD 237 (255)
T ss_dssp SCBCHHHHHHHHHHHHSGG
T ss_pred CCcCHHHHHHHHHHHhCch
Confidence 4678999999999988544
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.59 E-value=7.8e-15 Score=135.13 Aligned_cols=213 Identities=12% Similarity=0.084 Sum_probs=143.6
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+|++|||||++.||.+++++|++.| .+|++.+|+.+. .+++.+.+. .
T Consensus 2 gKValITGas~GIG~aia~~la~~G---a~V~i~~r~~~~---l~~~~~~l~--------~------------------- 48 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEG---LRVFVCARGEEG---LRTTLKELR--------E------------------- 48 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHHHH--------H-------------------
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHH---HHHHHHHHH--------h-------------------
Confidence 6889999999999999999999999 899999997431 122222111 1
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIRTA 193 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~~~ 193 (366)
...++.++.+|+++++ ++..+++ ++|++|||||... ..+.++..
T Consensus 49 ----------------~g~~~~~~~~Dvs~~~------~v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~e~~~~~ 106 (257)
T d2rhca1 49 ----------------AGVEADGRTCDVRSVP------EIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDV 106 (257)
T ss_dssp ----------------TTCCEEEEECCTTCHH------HHHHHHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHH
T ss_pred ----------------cCCcEEEEEeecCCHH------HHHHHHHHHHHHhCCCCEEEecccccCCCChHHcCHHHHHHH
Confidence 2357889999999987 6665553 6899999999753 23567889
Q ss_pred HHHHHHHHHHHHHHHHhc-----CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC
Q psy17528 194 YNINVKGTQTILALAKRM-----KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG 268 (366)
Q Consensus 194 ~~~nv~~~~~ll~~a~~~-----~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (366)
+++|+.++..+.+.+.+. .+..++|.+||....... +
T Consensus 107 ~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~~~~--------------------------------------~ 148 (257)
T d2rhca1 107 VETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGV--------------------------------------V 148 (257)
T ss_dssp HHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGTSCC--------------------------------------T
T ss_pred HHHHhhhhhHHHHHHhHHHHHHhcCCccccccccccccccc--------------------------------------c
Confidence 999999999998877541 244589999997654221 1
Q ss_pred CCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCc-cccc-cchHHHHHHHHhcCcceeecCCCCcc
Q psy17528 269 KPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPL-WIKG-FNGVMALALGAGTGLIRVVQTDPNIS 341 (366)
Q Consensus 269 ~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~-~~~~-~~~~~~~~~~~~~g~~~~l~~~~~~~ 341 (366)
....|+.+|...+.+.+... +|++++.|.||.|-.+....... +.+. -....+........ ...
T Consensus 149 ~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~e~~~~~~~~---------~Pl 219 (257)
T d2rhca1 149 HAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITAR---------VPI 219 (257)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSBCSHHHHHHHHHHHHHTTCCHHHHHHHHHTT---------STT
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCHHHHHHHhhhhhhcccChHHHHHHHHhc---------CCC
Confidence 12679999999998887766 78999999999986542110000 0000 00011112222211 112
Q ss_pred cCcccHHHHHHHHHHHHHhhh
Q psy17528 342 MDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 342 ~~~v~vdDva~ai~~~~~~~~ 362 (366)
.-+...+|+|++++.++...+
T Consensus 220 gR~~~pedia~~v~fL~S~~s 240 (257)
T d2rhca1 220 GRYVQPSEVAEMVAYLIGPGA 240 (257)
T ss_dssp SSCBCHHHHHHHHHHHTSGGG
T ss_pred CCCcCHHHHHHHHHHHhCchh
Confidence 347789999999999885443
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=99.59 E-value=5.5e-14 Score=128.39 Aligned_cols=203 Identities=14% Similarity=0.074 Sum_probs=141.6
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++|+++||||++.||.+++++|++.| .+|++..|+.. ++.+..+
T Consensus 2 ~l~gK~alItGas~GIG~aia~~l~~~G---~~V~~~~r~~~------~~~~~~~------------------------- 47 (241)
T d2a4ka1 2 RLSGKTILVTGAASGIGRAALDLFAREG---ASLVAVDREER------LLAEAVA------------------------- 47 (241)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHHHH-------------------------
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHH------HHHHHHH-------------------------
Confidence 4689999999999999999999999999 89999999742 2222111
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHI 190 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~ 190 (366)
....++.++.+|+++++ ++.++++ .+|++||||+... ....+
T Consensus 48 ------------------~~~~~~~~~~~Dls~~~------~i~~~~~~i~~~~g~iDiLinnAg~~~~~~~~~~~~~~~ 103 (241)
T d2a4ka1 48 ------------------ALEAEAIAVVADVSDPK------AVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAW 103 (241)
T ss_dssp ------------------TCCSSEEEEECCTTSHH------HHHHHHHHHHHHHSCCCEEEEGGGGTTTTC----CHHHH
T ss_pred ------------------HcCCceEEEEecCCCHH------HHHHHHHHHHHHhCCccEeccccccccccchhhhhcccc
Confidence 12357888999999987 6665553 6899999999753 12456
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCC
Q psy17528 191 RTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGK 269 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (366)
...+++|+.+...+.+.+... ...+.++.+|+.+......
T Consensus 104 ~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~~~~--------------------------------------- 144 (241)
T d2a4ka1 104 EKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGAFG--------------------------------------- 144 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCHHH---------------------------------------
T ss_pred ccccccccccccccccccccccccccceeeccccccccccC---------------------------------------
Confidence 788999999999998876543 3334455555544221100
Q ss_pred CchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCc
Q psy17528 270 PNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDV 344 (366)
Q Consensus 270 ~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~ 344 (366)
...|+.+|...|.+.+..+ +|+++.++.||.|-.+... .+. .....+..+.. ...-+
T Consensus 145 ~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~-------~~~--~~~~~~~~~~~---------p~~r~ 206 (241)
T d2a4ka1 145 LAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTA-------GLP--PWAWEQEVGAS---------PLGRA 206 (241)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGT-------TSC--HHHHHHHHHTS---------TTCSC
T ss_pred ccccchhhHHHHHHHHHHHHHHhHhCCEEeeeccCcCCCHHHH-------hhh--HhHHHHHHhCC---------CCCCC
Confidence 1579999999999998776 7899999999999654322 111 12222222211 12346
Q ss_pred ccHHHHHHHHHHHHHhhh
Q psy17528 345 VPGDRVINAMAALAWYFL 362 (366)
Q Consensus 345 v~vdDva~ai~~~~~~~~ 362 (366)
...+|+|++++.++...+
T Consensus 207 ~~p~dva~~v~fL~S~~s 224 (241)
T d2a4ka1 207 GRPEEVAQAALFLLSEES 224 (241)
T ss_dssp BCHHHHHHHHHHHHSGGG
T ss_pred cCHHHHHHHHHHHhcchh
Confidence 789999999999886543
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=99.59 E-value=1.3e-14 Score=133.89 Aligned_cols=167 Identities=14% Similarity=0.170 Sum_probs=125.6
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++|+++||||++.||.++++.|.+.| .+|++.+|+... .+++.+.++
T Consensus 2 rL~gK~alITGas~GIG~aia~~la~~G---a~V~~~~r~~~~---l~~~~~~~~------------------------- 50 (260)
T d1zema1 2 KFNGKVCLVTGAGGNIGLATALRLAEEG---TAIALLDMNREA---LEKAEASVR------------------------- 50 (260)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHHHH-------------------------
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHH---HHHHHHHHH-------------------------
Confidence 4689999999999999999999999999 899999997432 122222111
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC--------hhhh
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR--------FDEH 189 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~--------~~~~ 189 (366)
....++..+.+|+++++ ++.++++ .+|++|||||... ....
T Consensus 51 ------------------~~g~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~iDilVnnaG~~~~~~~~~~~~~~~ 106 (260)
T d1zema1 51 ------------------EKGVEARSYVCDVTSEE------AVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDD 106 (260)
T ss_dssp ------------------TTTSCEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCBCGGGCCHHH
T ss_pred ------------------hcCCcEEEEEccCCCHH------HHHHHHHHHHHHhCCCCeehhhhccccccCccccccHHH
Confidence 12357889999999976 5665553 6899999999642 1245
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 190 IRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 190 ~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
++..+++|+.++..+.+.+.+. .+..++|++||........
T Consensus 107 ~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~~~------------------------------------ 150 (260)
T d1zema1 107 FARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPP------------------------------------ 150 (260)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSCCT------------------------------------
T ss_pred HHhhccccccccccchhhHHhhhhhhcCCCCCeeechhhccCCc------------------------------------
Confidence 7789999999988887765431 2456899999986542211
Q ss_pred CCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccC
Q psy17528 267 GGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPT 304 (366)
Q Consensus 267 ~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~ 304 (366)
....|+.+|...+.+.+... +|++++.|.||.|-.+
T Consensus 151 --~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~ 191 (260)
T d1zema1 151 --NMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPG 191 (260)
T ss_dssp --TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSS
T ss_pred --chHHHHHHHHHHHHHHHHHHHHhhhhCCEEEEeccCcccCc
Confidence 11679999999998887766 7899999999998765
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=4.4e-14 Score=133.02 Aligned_cols=215 Identities=11% Similarity=0.093 Sum_probs=143.7
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
..+++|+++||||++.||.+++++|++.| .+|++.+|+.... +...+ .+...
T Consensus 8 g~L~gKvalITGas~GIG~aia~~la~~G---a~Vvi~~r~~~~l---~~~~~--------el~~~-------------- 59 (297)
T d1yxma1 8 GLLQGQVAIVTGGATGIGKAIVKELLELG---SNVVIASRKLERL---KSAAD--------ELQAN-------------- 59 (297)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHH---HHHHH--------HHHHT--------------
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHHH---HHHHH--------HHHhh--------------
Confidence 56889999999999999999999999999 8999999974321 11111 11111
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhh
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEH 189 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~ 189 (366)
.......++..+.+|+++.+ ++..+++ .+|++|||||... ....
T Consensus 60 ----------------~~~~~~~~~~~~~~Dvs~~~------~v~~~~~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~ 117 (297)
T d1yxma1 60 ----------------LPPTKQARVIPIQCNIRNEE------EVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKG 117 (297)
T ss_dssp ----------------SCTTCCCCEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHH
T ss_pred ----------------hccccCceEEEEeccCCCHH------HHHHHHHHHHHHhCCeEEEEeeccccccCchhhhhhhh
Confidence 01223468889999999987 6665553 6899999999642 2356
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 190 IRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 190 ~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
++..+++|+.++..+.+.+.+. .+..++|.+|+......
T Consensus 118 ~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~Ii~~ss~~~~~~-------------------------------------- 159 (297)
T d1yxma1 118 WHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKAGF-------------------------------------- 159 (297)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCCTTCC--------------------------------------
T ss_pred hhhhhcccccchhhHHHHHHHhhccccccccccccccccccc--------------------------------------
Confidence 7889999999998888866432 23346777766432111
Q ss_pred CCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcc
Q psy17528 267 GGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNIS 341 (366)
Q Consensus 267 ~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~ 341 (366)
+....|+.+|...+.+.+... +|+++..|.||.|..+........ .. ..........+ ..
T Consensus 160 -~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~---~~------~~~~~~~~~~~-----pl 224 (297)
T d1yxma1 160 -PLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGS---WG------QSFFEGSFQKI-----PA 224 (297)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGG---GG------GGGGTTGGGGS-----TT
T ss_pred -cccccchhHHHHHHHHHHHHHHHhcccCceEEEeeeCcCcCcchhhhccc---cC------HHHHHHHHhcC-----CC
Confidence 112679999999998887766 789999999999987642111000 00 00111111111 12
Q ss_pred cCcccHHHHHHHHHHHHHhh
Q psy17528 342 MDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 342 ~~~v~vdDva~ai~~~~~~~ 361 (366)
.-+...+|+|+++++++...
T Consensus 225 gR~g~pedvA~~v~fL~Sd~ 244 (297)
T d1yxma1 225 KRIGVPEEVSSVVCFLLSPA 244 (297)
T ss_dssp SSCBCTHHHHHHHHHHHSGG
T ss_pred CCCcCHHHHHHHHHHHhCch
Confidence 33667899999999988644
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.58 E-value=3.6e-14 Score=130.11 Aligned_cols=208 Identities=13% Similarity=0.073 Sum_probs=137.9
Q ss_pred cCCCCeEEEeCCcc--hHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccc
Q psy17528 45 FYKDQTIFITGATG--FLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGIT 122 (366)
Q Consensus 45 ~~~~~~ilItGatG--~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (366)
.+++|++|||||+| .||.+++++|++.| .+|++..|++......+++..
T Consensus 5 ~L~gK~alITGas~~~GIG~aiA~~la~~G---a~V~i~~~~~~~~~~~~~~~~-------------------------- 55 (256)
T d1ulua_ 5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAG---AEVALSYQAERLRPEAEKLAE-------------------------- 55 (256)
T ss_dssp CCTTCEEEEESCCCSSSHHHHHHHHHHHTT---CEEEEEESSGGGHHHHHHHHH--------------------------
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCC---CEEEEEeCcHHHHHHHHHhhh--------------------------
Confidence 36899999999998 79999999999999 889888887432211111111
Q ss_pred cccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC----------
Q psy17528 123 HRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR---------- 185 (366)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~---------- 185 (366)
......++.+|+++.+ ++..+++ ++|++||||+...
T Consensus 56 ---------------------~~~~~~~~~~D~~~~~------~v~~~~~~~~~~~g~iDilVnnag~~~~~~~~~~~~~ 108 (256)
T d1ulua_ 56 ---------------------ALGGALLFRADVTQDE------ELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYID 108 (256)
T ss_dssp ---------------------HTTCCEEEECCTTCHH------HHHHHHHHHHHHHSSEEEEEECCCCCCHHHHSSCGGG
T ss_pred ---------------------ccCcccccccccCCHH------HHHHHHHHHHHhcCCceEEEeccccccccccccchhh
Confidence 0135568899999976 6665553 6899999998642
Q ss_pred -hhhhHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhh
Q psy17528 186 -FDEHIRTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNE 263 (366)
Q Consensus 186 -~~~~~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 263 (366)
...++...+++|+.+...+.+.+... ..-.++|++||.......
T Consensus 109 ~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~~~~---------------------------------- 154 (256)
T d1ulua_ 109 TRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVV---------------------------------- 154 (256)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTSBC----------------------------------
T ss_pred hhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhcCCC----------------------------------
Confidence 12345678899999999888876543 223579999997654221
Q ss_pred cccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCC
Q psy17528 264 HIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDP 338 (366)
Q Consensus 264 ~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~ 338 (366)
+....|+.+|...+.+.+... +|++++.+.||.|..+.....+.. ........+..
T Consensus 155 ----~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~I~PG~i~t~~~~~~~~~-------~~~~~~~~~~~-------- 215 (256)
T d1ulua_ 155 ----PKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGF-------TKMYDRVAQTA-------- 215 (256)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC----------C-------HHHHHHHHHHS--------
T ss_pred ----CCchHHHHHHHHHHHHHHHHHHHhcccCCEEeeeccceeeeccccchhhh-------HHHHHHHHhcC--------
Confidence 112689999999999887766 789999999999987644321110 11222222111
Q ss_pred CcccCcccHHHHHHHHHHHHHhhh
Q psy17528 339 NISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 339 ~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
...-+...+|+|+++++++...+
T Consensus 216 -pl~R~~~pedvA~~v~fL~S~~s 238 (256)
T d1ulua_ 216 -PLRRNITQEEVGNLGLFLLSPLA 238 (256)
T ss_dssp -TTSSCCCHHHHHHHHHHHHSGGG
T ss_pred -CCCCCcCHHHHHHHHHHHhCchh
Confidence 12236678999999999886543
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=8.2e-15 Score=134.84 Aligned_cols=166 Identities=13% Similarity=0.086 Sum_probs=120.5
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
++|++|||||++.||.+++++|++.| .+|++.+|+.... ++..+.+.
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~G---a~V~i~~r~~~~~---~~~~~~l~--------------------------- 48 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKG---AKVALVDWNLEAG---VQCKAALH--------------------------- 48 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHH---HHHHHHHT---------------------------
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHHH---HHHHHHHH---------------------------
Confidence 58999999999999999999999999 8999999974321 11111111
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccChhhhHHHHHHHHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRFDEHIRTAYNINVK 199 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~~~~~~~~~~~nv~ 199 (366)
......++.++.+|+++.+ ++..+++ ++|++|||||... ..+++..+++|+.
T Consensus 49 --------------~~~~~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~G~iDilVnnAg~~~-~~~~~~~~~~n~~ 107 (254)
T d2gdza1 49 --------------EQFEPQKTLFIQCDVADQQ------QLRDTFRKVVDHFGRLDILVNNAGVNN-EKNWEKTLQINLV 107 (254)
T ss_dssp --------------TTSCGGGEEEEECCTTSHH------HHHHHHHHHHHHHSCCCEEEECCCCCC-SSSHHHHHHHHTH
T ss_pred --------------HhcCCCcEEEEEeecCCHH------HHHHHHHHHHHHcCCcCeecccccccc-cccchheeeeehh
Confidence 1111357889999999986 6666553 6899999999754 4567788899988
Q ss_pred HHHHHHHHHHh----c--CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchH
Q psy17528 200 GTQTILALAKR----M--KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSY 273 (366)
Q Consensus 200 ~~~~ll~~a~~----~--~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 273 (366)
++..+.+++.+ . +...++|.+||..+.... +....|
T Consensus 108 ~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~~~~--------------------------------------~~~~~Y 149 (254)
T d2gdza1 108 SVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPV--------------------------------------AQQPVY 149 (254)
T ss_dssp HHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCC--------------------------------------TTCHHH
T ss_pred hHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhccCC--------------------------------------CCccch
Confidence 87777665543 2 123579999998754221 112679
Q ss_pred HHHHHHHHHHHHH------hc-CCCCEEEEecCccccC
Q psy17528 274 TLTKATAEDLVRQ------VG-HELPICVLRPSIVFPT 304 (366)
Q Consensus 274 ~~sK~~~E~~l~~------~~-~gl~~~ilRp~~v~G~ 304 (366)
+.+|...+.+.+. +. +|++++.|.||.|-.+
T Consensus 150 ~asKaal~~ltrs~ala~e~~~~gIrVN~I~PG~i~T~ 187 (254)
T d2gdza1 150 CASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTA 187 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEcCCCCCh
Confidence 9999999888653 22 7899999999998654
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.57 E-value=1.6e-13 Score=126.98 Aligned_cols=224 Identities=14% Similarity=0.091 Sum_probs=147.0
Q ss_pred CcccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccc
Q psy17528 40 SPIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDI 119 (366)
Q Consensus 40 ~~~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (366)
.|....+++|++|||||++.||.+++++|++.| .+|++.+|+... ..+.+.+. ++.
T Consensus 10 ~~~~~sL~gK~~lITGas~GIG~aia~~la~~G---a~Vvi~~~~~~~--~~~~~~~~--------~~~----------- 65 (272)
T d1g0oa_ 10 GPQSASLEGKVALVTGAGRGIGREMAMELGRRG---CKVIVNYANSTE--SAEEVVAA--------IKK----------- 65 (272)
T ss_dssp SGGGGCCTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESSCHH--HHHHHHHH--------HHH-----------
T ss_pred CCCCcCCCCCEEEEeCCCCHHHHHHHHHHHHcC---CEEEEEeCCchH--HHHHHHHH--------HHh-----------
Confidence 345566899999999999999999999999999 899998887432 11222221 111
Q ss_pred ccccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------
Q psy17528 120 GITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR------- 185 (366)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~------- 185 (366)
...++.++.+|+++++ ++..+++ ++|++||+++...
T Consensus 66 ------------------------~g~~~~~~~~D~~~~~------~v~~~~~~~~~~~g~idilV~nag~~~~~~~~~~ 115 (272)
T d1g0oa_ 66 ------------------------NGSDAACVKANVGVVE------DIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDV 115 (272)
T ss_dssp ------------------------TTCCEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGC
T ss_pred ------------------------hCCceeeEeCCCCCHH------HHHHHHHHHHHHhCCCCccccccccchhhhhhhh
Confidence 2357888999999976 5665553 6799999999753
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHh-cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhc
Q psy17528 186 FDEHIRTAYNINVKGTQTILALAKR-MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEH 264 (366)
Q Consensus 186 ~~~~~~~~~~~nv~~~~~ll~~a~~-~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 264 (366)
....+...+++|+.++..+.+.+.+ +..-.+++.++|........
T Consensus 116 ~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~~~~~~---------------------------------- 161 (272)
T d1g0oa_ 116 TPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAKAV---------------------------------- 161 (272)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCSSC----------------------------------
T ss_pred hhhHHHHHhhhccceeeeeccccccccccccccccccccccccccc----------------------------------
Confidence 2345677889999999999887765 33345788887764321110
Q ss_pred ccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCC-ccc--cccchHHHHHHHHhcCcceeecC
Q psy17528 265 IIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMP-LWI--KGFNGVMALALGAGTGLIRVVQT 336 (366)
Q Consensus 265 ~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~-~~~--~~~~~~~~~~~~~~~g~~~~l~~ 336 (366)
.....|+.+|...+.+.+... +|++++.|.||.|-.+...... ... ...............
T Consensus 162 ---~~~~~Y~asKaal~~ltk~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 230 (272)
T d1g0oa_ 162 ---PKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAV-------- 230 (272)
T ss_dssp ---SSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHH--------
T ss_pred ---cchhhHHHHHHHHHHHHHHHHHHhchhCeEEEEEccCCcCChHHHHHHHhhhhcccccchHHHHHHHHH--------
Confidence 112679999999999887665 7899999999999754210000 000 000000111111110
Q ss_pred CCCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 337 DPNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 337 ~~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
......-+...+|||++++.++...+
T Consensus 231 ~~~PlgR~~~peevA~~v~fL~s~~s 256 (272)
T d1g0oa_ 231 QWSPLRRVGLPIDIARVVCFLASNDG 256 (272)
T ss_dssp HSCTTCSCBCHHHHHHHHHHHHSGGG
T ss_pred ccCCCCCCcCHHHHHHHHHHHhCchh
Confidence 01112347888999999999886544
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=99.57 E-value=4.2e-14 Score=131.63 Aligned_cols=209 Identities=18% Similarity=0.166 Sum_probs=137.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|++|||||++.||.+++++|++.| .+|++.+|+.+ ++.+...+
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~G---a~V~i~~r~~~------~l~~~~~~------------------------- 48 (276)
T d1bdba_ 3 LKGEAVLITGGASGLGRALVDRFVAEG---AKVAVLDKSAE------RLAELETD------------------------- 48 (276)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHHHHHHH-------------------------
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHH------HHHHHHHH-------------------------
Confidence 579999999999999999999999999 89999999742 22221111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh------------
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF------------ 186 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~------------ 186 (366)
...++..+.+|+++.+ ++.++++ .+|++|||||....
T Consensus 49 ------------------~~~~~~~~~~Dv~~~~------~~~~~~~~~~~~~g~idilvnnAG~~~~~~~~~~~~~e~~ 104 (276)
T d1bdba_ 49 ------------------HGDNVLGIVGDVRSLE------DQKQAASRCVARFGKIDTLIPNAGIWDYSTALVDLPEESL 104 (276)
T ss_dssp ------------------HGGGEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEECCCCCCCTTCCGGGSCTTTH
T ss_pred ------------------cCCCeeEEecccccHH------HHHHHHHHHHHHhCCcccccccccccCCCCccccccccch
Confidence 1246888999999976 5655543 68999999996421
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhc--CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhc
Q psy17528 187 DEHIRTAYNINVKGTQTILALAKRM--KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEH 264 (366)
Q Consensus 187 ~~~~~~~~~~nv~~~~~ll~~a~~~--~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 264 (366)
+..++..+++|+.++..+.+.+.+. ..-.++|++||.......
T Consensus 105 ~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~g~iI~i~S~~~~~~~----------------------------------- 149 (276)
T d1bdba_ 105 DAAFDEVFHINVKGYIHAVKACLPALVASRGNVIFTISNAGFYPN----------------------------------- 149 (276)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTSTT-----------------------------------
T ss_pred hhhhhHHHHHhhHHHHHHHHHHHHHHHhcCCCceeeeechhccCC-----------------------------------
Confidence 1246788999999988877765431 112478888887543111
Q ss_pred ccCCCCchHHHHHHHHHHHHHHhc----CCCCEEEEecCccccCCCCCCCcccc-ccchHHHHHHHHhcCcceeecCCCC
Q psy17528 265 IIGGKPNSYTLTKATAEDLVRQVG----HELPICVLRPSIVFPTLQEPMPLWIK-GFNGVMALALGAGTGLIRVVQTDPN 339 (366)
Q Consensus 265 ~~~~~~~~Y~~sK~~~E~~l~~~~----~gl~~~ilRp~~v~G~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~l~~~~~ 339 (366)
+....|+.+|...+.+.+... +++++..|.||.|-.+-..+...... .......+....... .
T Consensus 150 ---~~~~~Y~asKaal~~ltr~lA~ela~~IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 217 (276)
T d1bdba_ 150 ---GGGPLYTAAKHAIVGLVRELAFELAPYVRVNGVGSGGINSDLRGPSSLGMGSKAISTVPLADMLKSV---------L 217 (276)
T ss_dssp ---SSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCSCCCCCGGGC---------CHHHHHTTT---------C
T ss_pred ---CCCchHHHHHHHHHHHHHHHHHHhhcceEEcccCCCCEecCcCCccchhhhhhccCcHHHHHHHHhc---------C
Confidence 112679999999998887766 56999999999997664332111100 000000011111111 1
Q ss_pred cccCcccHHHHHHHHHHHHH
Q psy17528 340 ISMDVVPGDRVINAMAALAW 359 (366)
Q Consensus 340 ~~~~~v~vdDva~ai~~~~~ 359 (366)
...-+...+|+|++++.++.
T Consensus 218 PlgR~g~peeva~~v~fL~S 237 (276)
T d1bdba_ 218 PIGRMPEVEEYTGAYVFFAT 237 (276)
T ss_dssp TTSSCCCGGGGSHHHHHHHC
T ss_pred CCCCCcCHHHHHHHHHHHcC
Confidence 12235667899999998774
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=99.56 E-value=7.7e-14 Score=128.57 Aligned_cols=215 Identities=12% Similarity=0.098 Sum_probs=142.8
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++|++|||||++.||.+++++|++.| .+|++.+|+.... .+...++..
T Consensus 6 ~l~gK~alITGas~GIG~aia~~la~~G---a~V~i~~r~~~~~--~~~~~~~~~------------------------- 55 (260)
T d1h5qa_ 6 SFVNKTIIVTGGNRGIGLAFTRAVAAAG---ANVAVIYRSAADA--VEVTEKVGK------------------------- 55 (260)
T ss_dssp CCTTEEEEEETTTSHHHHHHHHHHHHTT---EEEEEEESSCTTH--HHHHHHHHH-------------------------
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHHH--HHHHHHHHH-------------------------
Confidence 4689999999999999999999999999 8999999986542 111111111
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHI 190 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~ 190 (366)
....++.++.+|+++++ ++.++++ .+|++|||||... ....+
T Consensus 56 ------------------~~g~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~ 111 (260)
T d1h5qa_ 56 ------------------EFGVKTKAYQCDVSNTD------IVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDF 111 (260)
T ss_dssp ------------------HHTCCEEEEECCTTCHH------HHHHHHHHHHHHSCSEEEEEECCCCCCCSCGGGCCHHHH
T ss_pred ------------------HhCCceEEEEccCCCHH------HHHHHHHHHHHHhCCCcEecccccccccCCHHHhccccc
Confidence 01357889999999987 6666553 6899999999742 23467
Q ss_pred HHHHHHHHHHHHHHHHHHHh----cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 191 RTAYNINVKGTQTILALAKR----MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~----~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
+..+++|+.++..+.+.+.+ ......++..|+.......... ..+
T Consensus 112 ~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~~~~~~~---~~~---------------------------- 160 (260)
T d1h5qa_ 112 AFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSS---LNG---------------------------- 160 (260)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEE---TTE----------------------------
T ss_pred cccccccccchhhhhhhhcccccccccceEEEEeeccccccccccc---ccc----------------------------
Confidence 88999999988877665432 2344566666665443211000 000
Q ss_pred CCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcc
Q psy17528 267 GGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNIS 341 (366)
Q Consensus 267 ~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~ 341 (366)
......|+.+|...+.+.+... +|++++.|.||.|-.+.... .. ........... ..
T Consensus 161 ~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~-------~~--~~~~~~~~~~~---------pl 222 (260)
T d1h5qa_ 161 SLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAH-------MD--KKIRDHQASNI---------PL 222 (260)
T ss_dssp ECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGG-------SC--HHHHHHHHHTC---------TT
T ss_pred CccccchhhhhhhHHHHHHHHHHHhchhCeEEeecCCCcccCcchhc-------cC--HHHHHHHHhcC---------CC
Confidence 0112679999999998887765 78999999999997653211 11 11222222211 12
Q ss_pred cCcccHHHHHHHHHHHHHhhh
Q psy17528 342 MDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 342 ~~~v~vdDva~ai~~~~~~~~ 362 (366)
.-+...+|+|++++.++...+
T Consensus 223 ~R~g~pedvA~~v~fL~S~~s 243 (260)
T d1h5qa_ 223 NRFAQPEEMTGQAILLLSDHA 243 (260)
T ss_dssp SSCBCGGGGHHHHHHHHSGGG
T ss_pred CCCcCHHHHHHHHHHHhcchh
Confidence 236678899999999885443
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.54 E-value=9.9e-14 Score=127.65 Aligned_cols=216 Identities=12% Similarity=0.082 Sum_probs=142.9
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
..++||+||||||++.||.++++.|++.| .+|++..|+... ..+++.+.++
T Consensus 2 ~~L~GK~alITGas~GIG~aia~~la~~G---~~Vvi~~~~~~~--~~~~~~~~~~------------------------ 52 (259)
T d1ja9a_ 2 KPLAGKVALTTGAGRGIGRGIAIELGRRG---ASVVVNYGSSSK--AAEEVVAELK------------------------ 52 (259)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESSCHH--HHHHHHHHHH------------------------
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcC---CEEEEEcCCChH--HHHHHHHHHH------------------------
Confidence 34679999999999999999999999999 888877765421 2223322221
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhh
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEH 189 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~ 189 (366)
....++.++.+|+++.+ ++..+++ .+|++|||||... ....
T Consensus 53 -------------------~~g~~~~~~~~D~~~~~------~v~~~~~~~~~~~g~idilinnag~~~~~~~~~~~~~~ 107 (259)
T d1ja9a_ 53 -------------------KLGAQGVAIQADISKPS------EVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQEL 107 (259)
T ss_dssp -------------------HTTCCEEEEECCTTSHH------HHHHHHHHHHHHHSCEEEEECCCCCCCCCCGGGCCHHH
T ss_pred -------------------HcCCCceEecCCCCCHH------HHHHHHHHHHHHcCCCcEEEeccccccccccccchHHH
Confidence 12357889999999876 5655553 6899999999753 2345
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcce-ecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccC
Q psy17528 190 IRTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYC-NCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIG 267 (366)
Q Consensus 190 ~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~-~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (366)
++..+++|+.+...+.+.+.+. ..-.+++.++|... ....
T Consensus 108 ~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~~~~~~-------------------------------------- 149 (259)
T d1ja9a_ 108 FDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMTGI-------------------------------------- 149 (259)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCCSC--------------------------------------
T ss_pred HHHHHhhccceeeeehhhhhhhhhcCCcccccccccccccCC--------------------------------------
Confidence 6788999999998888876653 22345666666532 2110
Q ss_pred CCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCC------CCCCccccccchHHHHHHHHhcCcceeecC
Q psy17528 268 GKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQ------EPMPLWIKGFNGVMALALGAGTGLIRVVQT 336 (366)
Q Consensus 268 ~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~------~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~ 336 (366)
+....|+.+|...+.+.+... +|+++..|.||.|-.+.. ....... ... ...+.......
T Consensus 150 ~~~~~Y~asK~al~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~------- 220 (259)
T d1ja9a_ 150 PNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYK-GMP-QEKIDEGLANM------- 220 (259)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCT-TCC-HHHHHHHHHHT-------
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHhhcCeEEeccCcCCccChhhhhhhhhhhhhhcc-cCC-HHHHHHHHHhC-------
Confidence 112679999999888887766 789999999999875311 0000000 000 11111111221
Q ss_pred CCCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 337 DPNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 337 ~~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
....-+...+|||+++++++...+
T Consensus 221 --~pl~R~g~p~eVa~~v~fL~S~~a 244 (259)
T d1ja9a_ 221 --NPLKRIGYPADIGRAVSALCQEES 244 (259)
T ss_dssp --STTSSCBCHHHHHHHHHHHHSGGG
T ss_pred --CCCCCCcCHHHHHHHHHHHhCchh
Confidence 123347789999999999887654
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=5.3e-14 Score=131.57 Aligned_cols=170 Identities=13% Similarity=0.119 Sum_probs=122.8
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
.|.||||||++.||.+++++|.+.|..+..|....|+.... +++.+....
T Consensus 2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~---~~l~~~~~~--------------------------- 51 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQ---GRLWEAARA--------------------------- 51 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGT---HHHHHHHHH---------------------------
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhh---HHHHHHHHH---------------------------
Confidence 35689999999999999999999996556666666654322 222221111
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-----CcCEEEEcCcccC-------hhhhHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-----QTTIIFHIAATVR-------FDEHIRTAYN 195 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-----~~d~Vih~a~~~~-------~~~~~~~~~~ 195 (366)
......++..+.+|+++.+ ++..+++ .+|+++|||+... ..+.++..++
T Consensus 52 -------------~~~~~~~~~~~~~Dv~~~~------~~~~~~~~~~~g~idilvnnag~~~~~~~~~~~~e~~~~~~~ 112 (285)
T d1jtva_ 52 -------------LACPPGSLETLQLDVRDSK------SVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLD 112 (285)
T ss_dssp -------------TTCCTTSEEEEECCTTCHH------HHHHHHHTCTTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHH
T ss_pred -------------HhccCCceEEEeccccchH------hhhhhhhhccccchhhhhhcccccccccccchhHhhhhhhhh
Confidence 2223468999999999987 6777664 4799999999753 2346678899
Q ss_pred HHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCch
Q psy17528 196 INVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNS 272 (366)
Q Consensus 196 ~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (366)
+|+.++..+.+++... .+-.++|++||..+.... +....
T Consensus 113 vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~g~~~~--------------------------------------~~~~~ 154 (285)
T d1jtva_ 113 VNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGL--------------------------------------PFNDV 154 (285)
T ss_dssp HHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTSCC--------------------------------------TTCHH
T ss_pred cchhHHHHHHHHHHHHHHHcCCCceEEEechhhcCCC--------------------------------------CCchH
Confidence 9999988877765321 245689999998654221 11267
Q ss_pred HHHHHHHHHHHHHHhc-----CCCCEEEEecCccccC
Q psy17528 273 YTLTKATAEDLVRQVG-----HELPICVLRPSIVFPT 304 (366)
Q Consensus 273 Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~ 304 (366)
|+.+|...+.+.+... +|++++++.||.|-.+
T Consensus 155 Y~asKaal~~l~~~la~El~~~gIrVn~V~PG~v~T~ 191 (285)
T d1jtva_ 155 YCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTA 191 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC-
T ss_pred HHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCCCh
Confidence 9999999888887665 7999999999999765
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.52 E-value=3.2e-13 Score=123.24 Aligned_cols=172 Identities=15% Similarity=0.186 Sum_probs=120.8
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
+||+||||||++.||.+++++|++.+.+-.+|++..|+.+.... +.++..
T Consensus 1 ~MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~---~~~~~~--------------------------- 50 (248)
T d1snya_ 1 HMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKE---LEDLAK--------------------------- 50 (248)
T ss_dssp CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHH---HHHHHH---------------------------
T ss_pred CcCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHH---HHHHHh---------------------------
Confidence 47899999999999999999998632222899999998765422 222111
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH---------hCcCEEEEcCcccC----h----hhh
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI---------SQTTIIFHIAATVR----F----DEH 189 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~---------~~~d~Vih~a~~~~----~----~~~ 189 (366)
...++.++.+|+++++ .+..++ ..+|++|||||... . ...
T Consensus 51 -----------------~~~~~~~~~~Dvs~~~------~v~~~~~~i~~~~~~~~iDiLvnNAg~~~~~~~~~~~~~~~ 107 (248)
T d1snya_ 51 -----------------NHSNIHILEIDLRNFD------AYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQE 107 (248)
T ss_dssp -----------------HCTTEEEEECCTTCGG------GHHHHHHHHHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHH
T ss_pred -----------------cCCcEEEEEEEeccHH------HHHHHHhhhHHHhhcCCcceEEeeccccccCcccccCCHHH
Confidence 1257899999999987 444332 25899999999742 1 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc--------------CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcch
Q psy17528 190 IRTAYNINVKGTQTILALAKRM--------------KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASD 255 (366)
Q Consensus 190 ~~~~~~~nv~~~~~ll~~a~~~--------------~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~ 255 (366)
++..+++|+.++..+.+.+... .+..++|.+||....-...+ .
T Consensus 108 ~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S~~g~~~~~~-------~---------------- 164 (248)
T d1snya_ 108 LLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQGNT-------D---------------- 164 (248)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGGCSTTCC-------S----------------
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhhccccccccccccccccccccccccCCCC-------C----------------
Confidence 6778999999988887765321 13468999999754321110 0
Q ss_pred HHHHhhhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCC
Q psy17528 256 EEIALLNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQ 306 (366)
Q Consensus 256 ~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~ 306 (366)
+....|+.||.....+.+... +++.++.+.||.|-.+..
T Consensus 165 ------------~~~~~Y~aSKaal~~lt~~la~e~~~~gI~vn~v~PG~v~T~m~ 208 (248)
T d1snya_ 165 ------------GGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMG 208 (248)
T ss_dssp ------------CCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTTT
T ss_pred ------------CChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCCcccCCcc
Confidence 011579999998888886655 789999999999977643
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=8.9e-14 Score=127.26 Aligned_cols=209 Identities=12% Similarity=0.081 Sum_probs=140.2
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+++|++|||||++.||.++++.|++.| .+|++.+|++. ++.+ +.+
T Consensus 3 ~l~gK~alITGas~GIG~aia~~la~~G---~~Vi~~~r~~~------~l~~---------~~~---------------- 48 (245)
T d2ag5a1 3 RLDGKVIILTAAAQGIGQAAALAFAREG---AKVIATDINES------KLQE---------LEK---------------- 48 (245)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEESCHH------HHGG---------GGG----------------
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcC---CEEEEEeCCHH------HHHH---------HHh----------------
Confidence 4789999999999999999999999999 89999999742 1211 111
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH---hCcCEEEEcCcccCh-------hhhHHHHH
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI---SQTTIIFHIAATVRF-------DEHIRTAY 194 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~---~~~d~Vih~a~~~~~-------~~~~~~~~ 194 (366)
...+.....|+.+.+ ...... ..+|++||+||.... ...++..+
T Consensus 49 --------------------~~~~~~~~~d~~~~~------~~~~~~~~~~~id~lVn~ag~~~~~~~~~~~~~~~~~~~ 102 (245)
T d2ag5a1 49 --------------------YPGIQTRVLDVTKKK------QIDQFANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSM 102 (245)
T ss_dssp --------------------STTEEEEECCTTCHH------HHHHHHHHCSCCSEEEECCCCCCCBCGGGCCHHHHHHHH
T ss_pred --------------------ccCCceeeeeccccc------cccccccccccceeEEecccccCCCChhhCCHHHHHHHH
Confidence 134666777776654 333333 478999999997532 34678899
Q ss_pred HHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCc
Q psy17528 195 NINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPN 271 (366)
Q Consensus 195 ~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (366)
++|+.++..+.+.+.+. .+..++|++||....-. + .....
T Consensus 103 ~vn~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~---------~----------------------------~~~~~ 145 (245)
T d2ag5a1 103 NLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVK---------G----------------------------VVNRC 145 (245)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTB---------C----------------------------CTTBH
T ss_pred HHhhccchhHHHhhCcccccCCCceeeeeechhhccC---------C----------------------------ccchh
Confidence 99999998887766531 24568999998643100 0 01126
Q ss_pred hHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCccc
Q psy17528 272 SYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVP 346 (366)
Q Consensus 272 ~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~ 346 (366)
.|+.+|...+.+++... +|+++..|.||.|-++.... ..........+....... ....-+..
T Consensus 146 ~Y~~sKaal~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~---~~~~~~~~~~~~~~~~~~---------~pl~R~~~ 213 (245)
T d2ag5a1 146 VYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQE---RIQARGNPEEARNDFLKR---------QKTGRFAT 213 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHH---HHHHSSSHHHHHHHHHHT---------CTTSSCEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeceeechhhHh---hhhhhhhhHHHHHHHHhc---------CCCCCCcC
Confidence 89999999999887766 78999999999987653210 000000011111222211 12334778
Q ss_pred HHHHHHHHHHHHHhhh
Q psy17528 347 GDRVINAMAALAWYFL 362 (366)
Q Consensus 347 vdDva~ai~~~~~~~~ 362 (366)
.+|+|+++..++...+
T Consensus 214 pedva~~v~fL~s~~s 229 (245)
T d2ag5a1 214 AEEIAMLCVYLASDES 229 (245)
T ss_dssp HHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHHHHhChhh
Confidence 8999999999886543
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=99.51 E-value=2.6e-13 Score=126.60 Aligned_cols=212 Identities=14% Similarity=0.101 Sum_probs=136.8
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITH 123 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (366)
..+++|+++||||+|.||.+++++|++.| .+|++.+|+.... +...+. +...
T Consensus 21 ~~l~gK~alITGas~GIG~aiA~~la~~G---a~Vii~~r~~~~l---~~~~~~--------l~~~-------------- 72 (294)
T d1w6ua_ 21 NSFQGKVAFITGGGTGLGKGMTTLLSSLG---AQCVIASRKMDVL---KATAEQ--------ISSQ-------------- 72 (294)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHH---HHHHHH--------HHHH--------------
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcC---CEEEEEECCHHHH---HHHHHH--------HHHh--------------
Confidence 56789999999999999999999999999 8999999975321 111111 1110
Q ss_pred ccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccCh-------hhh
Q psy17528 124 RVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRF-------DEH 189 (366)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~-------~~~ 189 (366)
...++.++.+|+++.+ .+..++. ++|++||+||.... ...
T Consensus 73 --------------------~g~~~~~~~~D~~~~~------~v~~~~~~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~ 126 (294)
T d1w6ua_ 73 --------------------TGNKVHAIQCDVRDPD------MVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNA 126 (294)
T ss_dssp --------------------HSSCEEEEECCTTCHH------HHHHHHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHH
T ss_pred --------------------cCCceEEEEecccChH------HHHHHhhhhhhhccccchhhhhhhhccccccccchhhh
Confidence 1356788999999876 5554442 68999999997532 234
Q ss_pred HHHHHHHHHHHHHHHHHHH----HhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcc
Q psy17528 190 IRTAYNINVKGTQTILALA----KRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHI 265 (366)
Q Consensus 190 ~~~~~~~nv~~~~~ll~~a----~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (366)
+...+.+|......+.... ........++.+|+.+.....
T Consensus 127 ~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~~~------------------------------------ 170 (294)
T d1w6ua_ 127 WKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGS------------------------------------ 170 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCC------------------------------------
T ss_pred hhhheeeecccchhhhhhhhcccccccccccccccccchhhhcc------------------------------------
Confidence 5566777777666554432 222344567777776543211
Q ss_pred cCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCc
Q psy17528 266 IGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNI 340 (366)
Q Consensus 266 ~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~ 340 (366)
+....|+.+|...+.+.+... +|+++.+|.||.|-.+....... .. ........... .
T Consensus 171 --~~~~~YsasKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~---~~---~~~~~~~~~~~---------p 233 (294)
T d1w6ua_ 171 --GFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLD---PT---GTFEKEMIGRI---------P 233 (294)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CC---TT---SHHHHHHHTTC---------T
T ss_pred --cccchHHHHHHHHHHHHHHHHHHHhHhCeEEEEEccCccccchhhhccC---Cc---HHHHHHHhhcC---------C
Confidence 112679999999999988766 78999999999998765322110 00 11112222211 1
Q ss_pred ccCcccHHHHHHHHHHHHHhhh
Q psy17528 341 SMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 341 ~~~~v~vdDva~ai~~~~~~~~ 362 (366)
..-+...+|+|++++.++...+
T Consensus 234 l~R~~~pediA~~v~fL~sd~s 255 (294)
T d1w6ua_ 234 CGRLGTVEELANLAAFLCSDYA 255 (294)
T ss_dssp TSSCBCHHHHHHHHHHHTSGGG
T ss_pred CCCCCCHHHHHHHHHHHhCchh
Confidence 2336678999999999886543
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.50 E-value=1.1e-13 Score=127.15 Aligned_cols=170 Identities=15% Similarity=0.133 Sum_probs=124.9
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHH---hCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLR---CCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIG 120 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~---~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (366)
+.+++|+++||||++.||.+++++|.+ .| .+|++.+|+.+. .+.+.+.+. ..
T Consensus 2 ~~L~gKvalITGas~GIG~aiA~~lA~~~~~G---~~Vv~~~r~~~~---l~~~~~~l~--------~~----------- 56 (259)
T d1oaaa_ 2 DGLGCAVCVLTGASRGFGRALAPQLARLLSPG---SVMLVSARSESM---LRQLKEELG--------AQ----------- 56 (259)
T ss_dssp CCCBSEEEEESSCSSHHHHHHHHHHHTTBCTT---CEEEEEESCHHH---HHHHHHHHH--------HH-----------
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHhcccCC---CEEEEEECCHHH---HHHHHHHHH--------hh-----------
Confidence 467899999999999999999999986 56 899999997432 122222111 11
Q ss_pred cccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-----------CcCEEEEcCcccC----
Q psy17528 121 ITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-----------QTTIIFHIAATVR---- 185 (366)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-----------~~d~Vih~a~~~~---- 185 (366)
. ...++.++.+|+++++ ++.++++ ..|++|||||...
T Consensus 57 --------------------~--~~~~~~~~~~Dvs~~~------~v~~l~~~~~~~~~~~~~~~~~lvnnag~~~~~~~ 108 (259)
T d1oaaa_ 57 --------------------Q--PDLKVVLAAADLGTEA------GVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSK 108 (259)
T ss_dssp --------------------C--TTSEEEEEECCTTSHH------HHHHHHHHHHHSCCCTTCCEEEEEECCCCCCCCSS
T ss_pred --------------------c--CCceEEEEEccCCCHH------HHHHHHHHHHHhhhhccCceEEEEecccccccCCC
Confidence 1 1247889999999986 6665542 3579999998632
Q ss_pred ------hhhhHHHHHHHHHHHHHHHHHHHHhc-C--C--CcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcc
Q psy17528 186 ------FDEHIRTAYNINVKGTQTILALAKRM-K--G--LKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHAS 254 (366)
Q Consensus 186 ------~~~~~~~~~~~nv~~~~~ll~~a~~~-~--~--~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~ 254 (366)
....++..+++|+.++..+.+.+.+. . + ..++|++||.......
T Consensus 109 ~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~~~~~~------------------------- 163 (259)
T d1oaaa_ 109 GFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQPY------------------------- 163 (259)
T ss_dssp CGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTSCC-------------------------
T ss_pred CccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcccccccccccccCCC-------------------------
Confidence 12356788999999999998877653 1 1 3579999998654221
Q ss_pred hHHHHhhhhcccCCCCchHHHHHHHHHHHHHHhc---CCCCEEEEecCccccC
Q psy17528 255 DEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVG---HELPICVLRPSIVFPT 304 (366)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~---~gl~~~ilRp~~v~G~ 304 (366)
+....|+.+|...+.+.+.+. ++++++.+.||.|-.+
T Consensus 164 -------------~~~~~Y~asKaal~~lt~~la~e~~gIrVn~v~PG~i~T~ 203 (259)
T d1oaaa_ 164 -------------KGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDND 203 (259)
T ss_dssp -------------TTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSH
T ss_pred -------------ccchHHHHHHHHHHHHHHHHHhCCCCCEEEEEEcCCCCCH
Confidence 112689999999999988877 8999999999998765
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.50 E-value=1.2e-13 Score=130.41 Aligned_cols=164 Identities=13% Similarity=0.149 Sum_probs=115.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCc------CHHHHHHHHhhhhhhhhhhhcCCCCCCcccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGST------SITQRVYNYFNDAVFDRMRLECPNYADKVDI 119 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (366)
+++|++|||||++.||.+++++|++.| .+|++.+|+.+.. ...+++.+.+.
T Consensus 5 l~gKvalITGas~GIG~aiA~~la~~G---a~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~-------------------- 61 (302)
T d1gz6a_ 5 FDGRVVLVTGAGGGLGRAYALAFAERG---ALVVVNDLGGDFKGVGKGSSAADKVVEEIR-------------------- 61 (302)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEECCCBCTTSCBCCSHHHHHHHHHHH--------------------
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHcC---CEEEEEeCCchhhhhhhhHHHHHHHHHHHh--------------------
Confidence 679999999999999999999999999 8999998865321 11222222111
Q ss_pred ccccccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH-------hCcCEEEEcCcccC-------
Q psy17528 120 GITHRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI-------SQTTIIFHIAATVR------- 185 (366)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~-------~~~d~Vih~a~~~~------- 185 (366)
.....+.+|+.+.+ ..++++ .++|++|||||...
T Consensus 62 --------------------------~~~~~~~~d~~~~~------~~~~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~ 109 (302)
T d1gz6a_ 62 --------------------------RRGGKAVANYDSVE------AGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRI 109 (302)
T ss_dssp --------------------------HTTCEEEEECCCGG------GHHHHHHHHHHHTSCCCEEEECCCCCCCCCGGGC
T ss_pred --------------------------hcccccccccchHH------HHHHHHHHHHHHcCCCCEEEECCccCCCCChhhC
Confidence 11123455666654 333332 26899999999753
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhh
Q psy17528 186 FDEHIRTAYNINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLN 262 (366)
Q Consensus 186 ~~~~~~~~~~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 262 (366)
....++..+++|+.++..+.+.+.+. .+-.++|++||..+....
T Consensus 110 ~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~~~~~~~--------------------------------- 156 (302)
T d1gz6a_ 110 SDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGN--------------------------------- 156 (302)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC---------------------------------
T ss_pred CHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCChhhcCCC---------------------------------
Confidence 23467889999999988887765431 245699999998654211
Q ss_pred hcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccc
Q psy17528 263 EHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVF 302 (366)
Q Consensus 263 ~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~ 302 (366)
.....|+.+|...+.+.+... +|+.++.|.||.+-
T Consensus 157 -----~~~~~Y~asKaal~~lt~~la~E~~~~gIrVN~I~PG~~~ 196 (302)
T d1gz6a_ 157 -----FGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAGS 196 (302)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECCS
T ss_pred -----CCcHHHHHHHHHHHHHHHHHHHHHhccCCceeeeCCCCCC
Confidence 112689999999998887766 78999999999763
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.48 E-value=3.2e-13 Score=122.55 Aligned_cols=192 Identities=10% Similarity=0.024 Sum_probs=128.0
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
++|+||||||+|.||.+++++|.+.| ++|+++++......
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G---~~V~~~~~~~~~~~------------------------------------- 40 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARN---WWVASIDVVENEEA------------------------------------- 40 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTT---CEEEEEESSCCTTS-------------------------------------
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEeCCccccc-------------------------------------
Confidence 47999999999999999999999999 89999988754311
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCC-CCHHHHHHHHh--CcCEEEEcCcccC--------hhhhHHHHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFG-LSARDEELLIS--QTTIIFHIAATVR--------FDEHIRTAYN 195 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~g-l~~~~~~~~~~--~~d~Vih~a~~~~--------~~~~~~~~~~ 195 (366)
.....+..+..+.+.. .....+...+. ++|++|||||... ....++..++
T Consensus 41 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~ 101 (236)
T d1dhra_ 41 -------------------SASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWK 101 (236)
T ss_dssp -------------------SEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHH
T ss_pred -------------------cccceeecccCcHHHHHHHHHHHHHHhCCCCceEEEECCcccccccchhcCCHHHHHHHHH
Confidence 1222333333332200 00001112222 4799999998531 1245677889
Q ss_pred HHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHH
Q psy17528 196 INVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYT 274 (366)
Q Consensus 196 ~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~ 274 (366)
+|+.++..+.+++.+. ..-.++|++||....... +....|+
T Consensus 102 ~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~~~--------------------------------------~~~~~Y~ 143 (236)
T d1dhra_ 102 QSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGT--------------------------------------PGMIGYG 143 (236)
T ss_dssp HHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCC--------------------------------------TTBHHHH
T ss_pred HcchHHHHHHHHHHHhcccccceeEEccHHHcCCc--------------------------------------cCCcccH
Confidence 9999998888876542 334689999998654221 1116899
Q ss_pred HHHHHHHHHHHHhc-------CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccH
Q psy17528 275 LTKATAEDLVRQVG-------HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPG 347 (366)
Q Consensus 275 ~sK~~~E~~l~~~~-------~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~v 347 (366)
.+|...+.+.+... +|+.++.+.||.|..+.. ..... ....-.|+..
T Consensus 144 asKaal~~lt~~la~El~~~~~gI~vn~v~PG~v~T~~~-----------------~~~~~---------~~~~~~~~~p 197 (236)
T d1dhra_ 144 MAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPMN-----------------RKSMP---------EADFSSWTPL 197 (236)
T ss_dssp HHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHHH-----------------HHHST---------TSCGGGSEEH
T ss_pred HHHHHHHHHHHHHHHHhccCCCcEEEEEEEeccCcCCcc-----------------hhhCc---------cchhhcCCCH
Confidence 99999999998876 378999999999876421 11111 1123357788
Q ss_pred HHHHHHHHHHHHhh
Q psy17528 348 DRVINAMAALAWYF 361 (366)
Q Consensus 348 dDva~ai~~~~~~~ 361 (366)
+++|+.+..++...
T Consensus 198 e~va~~~~~l~s~~ 211 (236)
T d1dhra_ 198 EFLVETFHDWITGN 211 (236)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999887654
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=1.1e-12 Score=119.14 Aligned_cols=204 Identities=11% Similarity=0.114 Sum_probs=136.3
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccc
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHR 124 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (366)
.+|||+++||||++.||.+++++|.+.| .+|++++|+.+.. +...+.+
T Consensus 2 slkGKvalITGas~GIG~aia~~la~~G---~~V~~~~r~~~~~---~~~~~~l-------------------------- 49 (248)
T d2o23a1 2 SVKGLVAVITGGASGLGLATAERLVGQG---ASAVLLDLPNSGG---EAQAKKL-------------------------- 49 (248)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECTTSSH---HHHHHHH--------------------------
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeCChHHH---HHHHHHh--------------------------
Confidence 5789999999999999999999999999 8999999986542 1221111
Q ss_pred cccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH-------hCcCEEEEcCcccC------------
Q psy17528 125 VYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI-------SQTTIIFHIAATVR------------ 185 (366)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~-------~~~d~Vih~a~~~~------------ 185 (366)
.........|+.+.. ...... ...|.++++++...
T Consensus 50 --------------------~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (248)
T d2o23a1 50 --------------------GNNCVFAPADVTSEK------DVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQT 103 (248)
T ss_dssp --------------------CTTEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCSEETTTTEE
T ss_pred --------------------CCCcccccccccccc------cccccccccccccccccccccccccccCCCccccccccc
Confidence 235566777777654 333222 25788888876531
Q ss_pred -hhhhHHHHHHHHHHHHHHHHHHHHhc---------CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcch
Q psy17528 186 -FDEHIRTAYNINVKGTQTILALAKRM---------KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASD 255 (366)
Q Consensus 186 -~~~~~~~~~~~nv~~~~~ll~~a~~~---------~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~ 255 (366)
....++..+++|+.++..+.+++.+. .+..++|++||.+......
T Consensus 104 ~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~~~------------------------- 158 (248)
T d2o23a1 104 HTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQV------------------------- 158 (248)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHCCT-------------------------
T ss_pred chHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhhccCCC-------------------------
Confidence 12456788999999999988876542 1234799999987652211
Q ss_pred HHHHhhhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCc
Q psy17528 256 EEIALLNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGL 330 (366)
Q Consensus 256 ~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~ 330 (366)
....|+.+|...+.+.+... +|++++.|.||.+..+.....+. ..........
T Consensus 159 -------------~~~~Y~asKaal~~lt~~la~e~~~~gIrvN~I~PG~i~T~~~~~~~~---------~~~~~~~~~~ 216 (248)
T d2o23a1 159 -------------GQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTSLPE---------KVCNFLASQV 216 (248)
T ss_dssp -------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC-------------------CHHHHTC
T ss_pred -------------CchHHHHHHHHHHHHHHHHHHHhcccCcceeeeccCceecchhhcCCH---------HHHHHHHhcC
Confidence 12679999999999998776 78999999999987654322110 0111111111
Q ss_pred ceeecCCCCcccCcccHHHHHHHHHHHHHhh
Q psy17528 331 IRVVQTDPNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 331 ~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
++ ..-+...+|+|++++.+++..
T Consensus 217 --pl------~~R~g~peevA~~v~fL~s~~ 239 (248)
T d2o23a1 217 --PF------PSRLGDPAEYAHLVQAIIENP 239 (248)
T ss_dssp --SS------SCSCBCHHHHHHHHHHHHHCT
T ss_pred --CC------CCCCcCHHHHHHHHHHHHhCC
Confidence 00 112668899999999988654
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.46 E-value=9.9e-13 Score=120.50 Aligned_cols=203 Identities=11% Similarity=0.019 Sum_probs=131.4
Q ss_pred eEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccccc
Q psy17528 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNYF 129 (366)
Q Consensus 50 ~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (366)
|+|||||++.||.+++++|.+.| .+|++.+|+.... +.+.....
T Consensus 2 TAlVTGas~GiG~aiA~~la~~G---a~V~i~~r~~~~~---~~~~~~~~------------------------------ 45 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAG---HTVACHDESFKQK---DELEAFAE------------------------------ 45 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTT---CEEEECCGGGGSH---HHHHHHHH------------------------------
T ss_pred EEEEECCCCHHHHHHHHHHHHCC---CEEEEEECCHHHH---HHHHhhhC------------------------------
Confidence 79999999999999999999999 8999999875432 22221110
Q ss_pred chhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH-------hCcCEEEEcCcccC----h----hhhHHHHH
Q psy17528 130 NDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI-------SQTTIIFHIAATVR----F----DEHIRTAY 194 (366)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~-------~~~d~Vih~a~~~~----~----~~~~~~~~ 194 (366)
.+..+|+.+.+ ++.+++ .++|++|||||... + .++++..+
T Consensus 46 -------------------~~~~~dv~~~~------~~~~~~~~~~~~~G~iDiLVnNAg~~~~~~~~~~~~~e~~~~~~ 100 (252)
T d1zmta1 46 -------------------TYPQLKPMSEQ------EPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAV 100 (252)
T ss_dssp -------------------HCTTSEECCCC------SHHHHHHHHHHHHSCCCEEEEECCCCCCCCCGGGSCHHHHHHHH
T ss_pred -------------------cEEEeccCCHH------HHHHHHHHHHHHcCCCCEEEECCcCCCCCCChhhCCHHHHHHHH
Confidence 01235666554 333333 26899999998632 1 24567888
Q ss_pred HHHHHHHHHHHHHHHhc---CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCc
Q psy17528 195 NINVKGTQTILALAKRM---KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPN 271 (366)
Q Consensus 195 ~~nv~~~~~ll~~a~~~---~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (366)
++|+.++..+.+.+.+. .+-.++|++||........ ...
T Consensus 101 ~vnl~~~~~~~~~~~~~m~~~~~G~IV~isS~~~~~~~~--------------------------------------~~~ 142 (252)
T d1zmta1 101 EALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPWK--------------------------------------ELS 142 (252)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSCCT--------------------------------------TCH
T ss_pred HHHhHHHHHHHHHHHHhhcccccceeecccccccccccc--------------------------------------ccc
Confidence 99998888777654321 2446899999986542211 126
Q ss_pred hHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCccc
Q psy17528 272 SYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVP 346 (366)
Q Consensus 272 ~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~ 346 (366)
.|+.+|...+.+.+... +|++++.|.||.|-.+......... .............+.. ...-+..
T Consensus 143 ~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~-~~~~~~e~~~~~~~~~---------pl~R~g~ 212 (252)
T d1zmta1 143 TYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTE-PWKTNPEHVAHVKKVT---------ALQRLGT 212 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHH-HHTTCHHHHHHHHHHS---------SSSSCBC
T ss_pred ccccccccHHHHHHHHHHHhcccCcEEEEEecCCCcCcchhhhhhcc-cccCCHHHHHHHHhcC---------CCCCCcC
Confidence 79999999998887765 7899999999999876442211000 0000011222222111 1123678
Q ss_pred HHHHHHHHHHHHHhh
Q psy17528 347 GDRVINAMAALAWYF 361 (366)
Q Consensus 347 vdDva~ai~~~~~~~ 361 (366)
.+|+|+++++++...
T Consensus 213 pedvA~~v~fL~S~~ 227 (252)
T d1zmta1 213 QKELGELVAFLASGS 227 (252)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhCch
Confidence 999999999988544
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.46 E-value=5.8e-13 Score=120.51 Aligned_cols=192 Identities=14% Similarity=0.070 Sum_probs=125.6
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
..+||||||+|.||.+++++|++.| ++|++++|+.....
T Consensus 2 ~gkVlITGas~GIG~aia~~l~~~G---~~V~~~~~~~~~~~-------------------------------------- 40 (235)
T d1ooea_ 2 SGKVIVYGGKGALGSAILEFFKKNG---YTVLNIDLSANDQA-------------------------------------- 40 (235)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTT---EEEEEEESSCCTTS--------------------------------------
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEECCchhcc--------------------------------------
Confidence 4579999999999999999999999 89999999864311
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCC-HHHHHHHH--hCcCEEEEcCcccC--------hhhhHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLS-ARDEELLI--SQTTIIFHIAATVR--------FDEHIRTAYNI 196 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~-~~~~~~~~--~~~d~Vih~a~~~~--------~~~~~~~~~~~ 196 (366)
.....+.+|..+.+.-.. ........ ..+|++|||||... ....++..+++
T Consensus 41 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iD~linnAG~~~~~~~~~~~~~~~~~~~~~~ 102 (235)
T d1ooea_ 41 ------------------DSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQ 102 (235)
T ss_dssp ------------------SEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHH
T ss_pred ------------------cccceeccccCchhHHHHHHHHHHHHhcCCCeeEEEECCcccccccccccCcHHHHhhHhhh
Confidence 222334455544320000 00111111 24799999999632 12345667899
Q ss_pred HHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCCCchHHH
Q psy17528 197 NVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGKPNSYTL 275 (366)
Q Consensus 197 nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~ 275 (366)
|+.++..+.+.+.+. ..-.++|++||........ ....|+.
T Consensus 103 n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~~~~~--------------------------------------~~~~Y~a 144 (235)
T d1ooea_ 103 SVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGPTP--------------------------------------SMIGYGM 144 (235)
T ss_dssp HHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCT--------------------------------------TBHHHHH
T ss_pred HHHHHHHHhhhcccccccceEEEEeccHHhcCCcc--------------------------------------cccchHH
Confidence 999998888876542 2335899999976542211 1168999
Q ss_pred HHHHHHHHHHHhc-------CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHH
Q psy17528 276 TKATAEDLVRQVG-------HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGD 348 (366)
Q Consensus 276 sK~~~E~~l~~~~-------~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vd 348 (366)
+|...+.+.+... .++.+..+.|+.+-.+ +...... ......|+..+
T Consensus 145 sKaal~~l~~~la~e~~~~~~~i~v~~i~Pg~~~T~-----------------~~~~~~~---------~~~~~~~~~~~ 198 (235)
T d1ooea_ 145 AKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTP-----------------MNRKWMP---------NADHSSWTPLS 198 (235)
T ss_dssp HHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCH-----------------HHHHHST---------TCCGGGCBCHH
T ss_pred HHHHHHHHHHHHHHHhccCCCceEEEEEecCcCcCc-----------------chhhhCc---------CCccccCCCHH
Confidence 9999999998865 3567788898887542 1111111 12234578899
Q ss_pred HHHHHHHHHHHhhh
Q psy17528 349 RVINAMAALAWYFL 362 (366)
Q Consensus 349 Dva~ai~~~~~~~~ 362 (366)
+++++++.++..+.
T Consensus 199 ~va~~~~~~l~~~~ 212 (235)
T d1ooea_ 199 FISEHLLKWTTETS 212 (235)
T ss_dssp HHHHHHHHHHHCGG
T ss_pred HHHHHHHHHhcCcc
Confidence 99999887665543
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.43 E-value=2e-12 Score=117.89 Aligned_cols=172 Identities=15% Similarity=0.162 Sum_probs=114.9
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
|++|+||||||++.||.+++++|++.|. ..+|++..|+.+... .+.
T Consensus 1 M~~KtilITGassGIG~a~a~~la~~G~-~~~Vi~~~R~~~~~~---~l~------------------------------ 46 (250)
T d1yo6a1 1 MSPGSVVVTGANRGIGLGLVQQLVKDKN-IRHIIATARDVEKAT---ELK------------------------------ 46 (250)
T ss_dssp CCCSEEEESSCSSHHHHHHHHHHHTCTT-CCEEEEEESSGGGCH---HHH------------------------------
T ss_pred CcCCEEEEeCCCCHHHHHHHHHHHHCCC-CCEEEEEeCCHHHHH---HHH------------------------------
Confidence 5679999999999999999999999972 247888888754321 111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh---------CcCEEEEcCcccCh--------hh
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS---------QTTIIFHIAATVRF--------DE 188 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~---------~~d~Vih~a~~~~~--------~~ 188 (366)
.....++.++.+|+++.+ .+..+++ ++|++|||||.... ..
T Consensus 47 ----------------~~~~~~~~~~~~Dvs~~~------~v~~~~~~i~~~~~~~~idilinnAG~~~~~~~~~~~~~~ 104 (250)
T d1yo6a1 47 ----------------SIKDSRVHVLPLTVTCDK------SLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRA 104 (250)
T ss_dssp ----------------TCCCTTEEEEECCTTCHH------HHHHHHHHHHHHHGGGCCCEEEECCCCCCCBCTTSCCCHH
T ss_pred ----------------HhhCCceEEEEEecCCHH------HHHHHHHHHHHHhCCCCeEEEEEcCcccCCCCccccCCHH
Confidence 112357899999999976 4544432 38999999996421 23
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh----c----------CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcc
Q psy17528 189 HIRTAYNINVKGTQTILALAKR----M----------KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHAS 254 (366)
Q Consensus 189 ~~~~~~~~nv~~~~~ll~~a~~----~----------~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~ 254 (366)
.++..+++|+.++..+.+.+.. . ....+++.+|+.........-. ....
T Consensus 105 ~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~--~~~~--------------- 167 (250)
T d1yo6a1 105 VIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSG--SAQF--------------- 167 (250)
T ss_dssp HHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCSTTCCST--TSSS---------------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceeccccccccccccccCCccc--ccch---------------
Confidence 5678999999998888776532 1 0123566666654332111000 0000
Q ss_pred hHHHHhhhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccC
Q psy17528 255 DEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPT 304 (366)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~ 304 (366)
....|+.||+....+.+... .|+.++.+.||.|-.+
T Consensus 168 --------------~~~aY~aSKaal~~l~~~la~el~~~gI~v~~i~PG~v~T~ 208 (250)
T d1yo6a1 168 --------------PVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTN 208 (250)
T ss_dssp --------------CBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC---
T ss_pred --------------hHHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCCC
Confidence 01469999999888887655 7899999999988653
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=4.2e-12 Score=115.61 Aligned_cols=207 Identities=13% Similarity=0.092 Sum_probs=135.5
Q ss_pred cCCCCeEEEeCCcc--hHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccc
Q psy17528 45 FYKDQTIFITGATG--FLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGIT 122 (366)
Q Consensus 45 ~~~~~~ilItGatG--~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (366)
++++|+||||||+| .||.+++++|++.| .+|++..|++.. .+++.++...
T Consensus 2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G---~~V~i~~~~~~~---~~~~~~~~~~---------------------- 53 (258)
T d1qsga_ 2 FLSGKRILVTGVASKLSIAYGIAQAMHREG---AELAFTYQNDKL---KGRVEEFAAQ---------------------- 53 (258)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTT---CEEEEEESSTTT---HHHHHHHHHH----------------------
T ss_pred cCCCCEEEEECCCCchhHHHHHHHHHHHcC---CEEEEEeCCHHH---HHHHHHHHhh----------------------
Confidence 57899999999998 79999999999999 899999997532 2333322211
Q ss_pred cccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccChh--------
Q psy17528 123 HRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRFD-------- 187 (366)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~~-------- 187 (366)
..+...+..|+.+.. .....+. ..|++||+++.....
T Consensus 54 ----------------------~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~d~~v~~a~~~~~~~~~~~~~~ 105 (258)
T d1qsga_ 54 ----------------------LGSDIVLQCDVAEDA------SIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVN 105 (258)
T ss_dssp ----------------------TTCCCEEECCTTCHH------HHHHHHHHHHTTCSSEEEEEECCCCCCGGGGSSCHHH
T ss_pred ----------------------cCCcceeecccchHH------HHHHHHHHhhhcccccceEEEeecccccccccccccc
Confidence 134456677777654 4444332 569999999874321
Q ss_pred ----hhHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhh
Q psy17528 188 ----EHIRTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLN 262 (366)
Q Consensus 188 ----~~~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 262 (366)
..+.....+|+.+...+.+.+... ..-..++++||.......
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~~~~--------------------------------- 152 (258)
T d1qsga_ 106 AVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAI--------------------------------- 152 (258)
T ss_dssp HCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBC---------------------------------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhccCC---------------------------------
Confidence 123446666777777777766553 233458888887543111
Q ss_pred hcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCC
Q psy17528 263 EHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTD 337 (366)
Q Consensus 263 ~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~ 337 (366)
+....|+.+|...+.+.+... +|++++.|+||.|..+.... ............... +
T Consensus 153 -----~~~~~Y~~sKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~-------~~~~~~~~~~~~~~~----p-- 214 (258)
T d1qsga_ 153 -----PNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASG-------IKDFRKMLAHCEAVT----P-- 214 (258)
T ss_dssp -----TTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGG-------STTHHHHHHHHHHHS----T--
T ss_pred -----CCcHHHHHHHHHHHHHHHHHHHHhCccCceeecccccccccccccc-------cchhhhHHHHHHhCC----C--
Confidence 112679999999999988776 78999999999998764321 111111222221111 1
Q ss_pred CCcccCcccHHHHHHHHHHHHHhh
Q psy17528 338 PNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 338 ~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
..-+...+|+|++++.++...
T Consensus 215 ---l~R~~~peeia~~v~fL~s~~ 235 (258)
T d1qsga_ 215 ---IRRTVTIEDVGNSAAFLCSDL 235 (258)
T ss_dssp ---TSSCCCHHHHHHHHHHHTSGG
T ss_pred ---CCCCcCHHHHHHHHHHHhCch
Confidence 123677899999999988543
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=2.9e-12 Score=118.26 Aligned_cols=167 Identities=16% Similarity=0.172 Sum_probs=117.2
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+++|++|||||++.||.+++++|++.| .+|++++|+.+. .+++.+. ...
T Consensus 12 L~GK~alITGassGIG~aiA~~la~~G---~~Vil~~r~~~~---l~~~~~~--------~~~----------------- 60 (269)
T d1xu9a_ 12 LQGKKVIVTGASKGIGREMAYHLAKMG---AHVVVTARSKET---LQKVVSH--------CLE----------------- 60 (269)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTT---CEEEEEESCHHH---HHHHHHH--------HHH-----------------
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEECCHHH---HHHHHHH--------Hhh-----------------
Confidence 689999999999999999999999999 899999997432 1111111 100
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH-------hCcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI-------SQTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~-------~~~d~Vih~a~~~~-------~~~~~~ 191 (366)
.....+.++..|+.+.. ...... ...|+++++|+... ..+.+.
T Consensus 61 -----------------~~~~~~~~~~~d~~~~~------~~~~~~~~~~~~~g~~~~li~nag~~~~~~~~~~~~~~~~ 117 (269)
T d1xu9a_ 61 -----------------LGAASAHYIAGTMEDMT------FAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVR 117 (269)
T ss_dssp -----------------HTCSEEEEEECCTTCHH------HHHHHHHHHHHHHTSCSEEEECCCCCCCCCCCCSCHHHHH
T ss_pred -----------------hhcccchhhhhhhhhHH------HHHHHHHHHHHHhCCccccccccccccccccccCCHHHhh
Confidence 12356777888888764 333322 26899999999742 234567
Q ss_pred HHHHHHHHHHHHHHHHHHhc--CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCCC
Q psy17528 192 TAYNINVKGTQTILALAKRM--KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGGK 269 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~--~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (366)
..+++|+.++..+.+.+... .+-.++|.+||..+.... +.
T Consensus 118 ~~~~vN~~~~~~~~~~~lp~m~~~~G~ii~isS~~~~~~~--------------------------------------p~ 159 (269)
T d1xu9a_ 118 KSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAY--------------------------------------PM 159 (269)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTSCC--------------------------------------TT
T ss_pred hheeeehhhHHHHHHHHHHHHHhcCCcceEeccchhcCCC--------------------------------------CC
Confidence 78899998887776655421 122589999997654221 11
Q ss_pred CchHHHHHHHHHHHHHHhc-------CCCCEEEEecCccccC
Q psy17528 270 PNSYTLTKATAEDLVRQVG-------HELPICVLRPSIVFPT 304 (366)
Q Consensus 270 ~~~Y~~sK~~~E~~l~~~~-------~gl~~~ilRp~~v~G~ 304 (366)
...|+.||+..+.+.+... .++.++.+.||.|-.+
T Consensus 160 ~~~Y~asKaal~~~~~~La~El~~~~~~I~V~~v~PG~v~T~ 201 (269)
T d1xu9a_ 160 VAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTE 201 (269)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCH
T ss_pred chHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEecCcCCCc
Confidence 2689999999888887665 3578889999998754
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=9.1e-12 Score=115.07 Aligned_cols=201 Identities=18% Similarity=0.161 Sum_probs=121.7
Q ss_pred CCeE-EEeCCcchHHHHHHHHHHHh-CCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 48 DQTI-FITGATGFLGSLLVEKLLRC-CPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 48 ~~~i-lItGatG~IG~~lv~~Ll~~-g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
+|+| +||||++.||.+++++|++. | .+|++..|+.+. .+...+. ++.
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g---~~Vi~~~r~~~~---~~~~~~~--------l~~----------------- 50 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFS---GDVVLTARDVTR---GQAAVQQ--------LQA----------------- 50 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSS---SEEEEEESSHHH---HHHHHHH--------HHH-----------------
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCC---CEEEEEECCHHH---HHHHHHH--------HHh-----------------
Confidence 4444 99999999999999999986 6 899999998532 1112121 111
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccC-------hhhhHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVR-------FDEHIR 191 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~-------~~~~~~ 191 (366)
...++.++.+|+++.+ .+.++++ .+|++|||||... ....++
T Consensus 51 ------------------~~~~~~~~~~Dvs~~~------sv~~~~~~~~~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~ 106 (275)
T d1wmaa1 51 ------------------EGLSPRFHQLDIDDLQ------SIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAE 106 (275)
T ss_dssp ------------------TTCCCEEEECCTTCHH------HHHHHHHHHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHH
T ss_pred ------------------cCCcEEEEEEecCCHH------HHHHHHHHHHHhcCCcEEEEEcCCcCCCCCcccCCHHHHH
Confidence 1246789999999987 5655543 6899999999753 234567
Q ss_pred HHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecC---cccc-ccccCCCCCChHHHHHHhhhcchHHHHhhhhccc
Q psy17528 192 TAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCD---RKFI-AEKFYPPVFTAEELSALVAHASDEEIALLNEHII 266 (366)
Q Consensus 192 ~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~---~~~~-~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (366)
..+++|+.++..+.+.+.+. ..-.++|.+||...... ..+. ..+.................. ... .....+..
T Consensus 107 ~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~~~~~~~~~~~y~~~k~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~ 184 (275)
T d1wmaa1 107 VTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKF-VED-TKKGVHQK 184 (275)
T ss_dssp HHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHHCSSCCHHHHHHHHHHH-HHH-HHTTCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccccccceeccccccchhhhhhhcccccchhhhccccccc-hhc-cccccccc
Confidence 78999999999999987653 22358999999754321 1110 111111111111110000000 000 00000111
Q ss_pred CC-CCchHHHHHHHHHHHHHHhc---------CCCCEEEEecCccccCC
Q psy17528 267 GG-KPNSYTLTKATAEDLVRQVG---------HELPICVLRPSIVFPTL 305 (366)
Q Consensus 267 ~~-~~~~Y~~sK~~~E~~l~~~~---------~gl~~~ilRp~~v~G~~ 305 (366)
.. ....|+.+|.....+.+... .++.++.+.||.|-.+.
T Consensus 185 ~~~~~~aY~~sK~a~~~~t~~la~~l~~~~~~~~I~vn~v~PG~v~T~m 233 (275)
T d1wmaa1 185 EGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDM 233 (275)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTT
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccCCc
Confidence 11 22579999998776654322 48999999999987653
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.32 E-value=2e-11 Score=109.37 Aligned_cols=192 Identities=13% Similarity=0.107 Sum_probs=127.8
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+|++|||||++.||.+++++|.+.| .+|++.+|+...
T Consensus 1 DK~alITGas~GIG~aiA~~la~~G---a~V~i~~~~~~~---------------------------------------- 37 (241)
T d1uaya_ 1 ERSALVTGGASGLGRAAALALKARG---YRVVVLDLRREG---------------------------------------- 37 (241)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHT---CEEEEEESSCCS----------------------------------------
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCccc----------------------------------------
Confidence 5899999999999999999999999 899999997542
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh------CcCEEEEcCcccC-----------hhhhH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS------QTTIIFHIAATVR-----------FDEHI 190 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~------~~d~Vih~a~~~~-----------~~~~~ 190 (366)
.+.....+|+.+.. ....+.. ..+.++++++... ....+
T Consensus 38 ------------------~~~~~~~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (241)
T d1uaya_ 38 ------------------EDLIYVEGDVTREE------DVRRAVARAQEEAPLFAVVSAAGVGLAEKILGKEGPHGLESF 93 (241)
T ss_dssp ------------------SSSEEEECCTTCHH------HHHHHHHHHHHHSCEEEEEECCCCCCCCCSBCSSSBCCHHHH
T ss_pred ------------------ccceEeeccccchh------hhHHHHHhhhccccccchhhhhhccccccccccccchhHHHH
Confidence 23456778887654 2333221 3455555555321 12345
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---------CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhh
Q psy17528 191 RTAYNINVKGTQTILALAKRM---------KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALL 261 (366)
Q Consensus 191 ~~~~~~nv~~~~~ll~~a~~~---------~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~ 261 (366)
+..+++|+.+...+.+.+... .+..++|++||.......
T Consensus 94 ~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~~-------------------------------- 141 (241)
T d1uaya_ 94 RRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQ-------------------------------- 141 (241)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCC--------------------------------
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhccCC--------------------------------
Confidence 677888988887777654321 133589999998654221
Q ss_pred hhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecC
Q psy17528 262 NEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQT 336 (366)
Q Consensus 262 ~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~ 336 (366)
+....|+.+|...+.+.+... +|++++.|.||.|-.+..... . ...........+ +
T Consensus 142 ------~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~V~PG~i~T~~~~~~-------~--~~~~~~~~~~~~--~-- 202 (241)
T d1uaya_ 142 ------IGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGL-------P--EKAKASLAAQVP--F-- 202 (241)
T ss_dssp ------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTS-------C--HHHHHHHHTTCC--S--
T ss_pred ------CCchhhHHHHHHHHHHHHHHHHHHhhcCCceeeecCCcccccccchh-------h--hhHHHHHHhcCC--C--
Confidence 112689999999999887766 789999999999976532111 0 111112222111 1
Q ss_pred CCCcccCcccHHHHHHHHHHHHHhh
Q psy17528 337 DPNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 337 ~~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
..-+...+|+|++++.++...
T Consensus 203 ----~~R~g~pedvA~~v~fL~s~~ 223 (241)
T d1uaya_ 203 ----PPRLGRPEEYAALVLHILENP 223 (241)
T ss_dssp ----SCSCCCHHHHHHHHHHHHHCT
T ss_pred ----CCCCcCHHHHHHHHHHHHhCC
Confidence 122567899999999988643
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=99.31 E-value=5.9e-11 Score=108.81 Aligned_cols=207 Identities=14% Similarity=0.059 Sum_probs=127.1
Q ss_pred cCCCCeEEEeCCcc--hHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccc
Q psy17528 45 FYKDQTIFITGATG--FLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGIT 122 (366)
Q Consensus 45 ~~~~~~ilItGatG--~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (366)
++++|++|||||+| .||.+++++|++.| .+|++..|++.. .+++.++...
T Consensus 2 ~L~gK~alITGaag~~GIG~AiA~~la~~G---a~V~i~~r~~~~---~~~~~~l~~~---------------------- 53 (274)
T d2pd4a1 2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQG---ATLAFTYLNESL---EKRVRPIAQE---------------------- 53 (274)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHTTT---CEEEEEESSTTT---HHHHHHHHHH----------------------
T ss_pred cCCCCEEEEECCCCCcHHHHHHHHHHHHCC---CEEEEEeCCHHH---HHHHHHHHhh----------------------
Confidence 57899999999887 79999999999999 899999998532 2333332211
Q ss_pred cccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH-------hCcCEEEEcCcccChh--------
Q psy17528 123 HRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI-------SQTTIIFHIAATVRFD-------- 187 (366)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~-------~~~d~Vih~a~~~~~~-------- 187 (366)
.....++..|+.+.. ....++ ..+|++|||++.....
T Consensus 54 ----------------------~~~~~~~~~d~~~~~------~~~~~~~~~~~~~g~id~lV~nag~~~~~~~~~~~~~ 105 (274)
T d2pd4a1 54 ----------------------LNSPYVYELDVSKEE------HFKSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLE 105 (274)
T ss_dssp ----------------------TTCCCEEECCTTCHH------HHHHHHHHHHHHTSCEEEEEECCCCCCGGGGSSCGGG
T ss_pred ----------------------CCceeEeeecccchh------hHHHHHHHHHHHcCCCCeEEeeccccccccccccccc
Confidence 134456788888765 444444 2689999999974321
Q ss_pred hhHHH---HHHHHHHHHHHHHHHHHhcCCCcE-EEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhh
Q psy17528 188 EHIRT---AYNINVKGTQTILALAKRMKGLKS-FVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNE 263 (366)
Q Consensus 188 ~~~~~---~~~~nv~~~~~ll~~a~~~~~~~~-~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 263 (366)
..... ....+...............+... ++.+|+.......
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~~~---------------------------------- 151 (274)
T d2pd4a1 106 TSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYM---------------------------------- 151 (274)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBC----------------------------------
T ss_pred ccchhhhhhhccccccccccccccccccccCcceeeeccccccccc----------------------------------
Confidence 11122 222233344444444433222334 4444444332111
Q ss_pred cccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCC
Q psy17528 264 HIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDP 338 (366)
Q Consensus 264 ~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~ 338 (366)
.....|+.+|...+.+.+... +|++++.|.||.+..+..... .............
T Consensus 152 ----~~~~~y~asK~al~~ltr~lA~e~~~~GIrvN~I~PG~v~T~~~~~~-------~~~~~~~~~~~~~--------- 211 (274)
T d2pd4a1 152 ----AHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGI-------ADFRMILKWNEIN--------- 211 (274)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGS-------TTHHHHHHHHHHH---------
T ss_pred ----ccchhhhHHHHHHHHHHHhhHHHhcCcCceecccccCcccCcccccc-------CchHHHHHHHhhh---------
Confidence 112679999999999887655 789999999999887643211 1111111111111
Q ss_pred CcccCcccHHHHHHHHHHHHHhh
Q psy17528 339 NISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 339 ~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
....-+...+|+|++++.++...
T Consensus 212 ~p~~r~~~pedIA~~v~fL~S~~ 234 (274)
T d2pd4a1 212 APLRKNVSLEEVGNAGMYLLSSL 234 (274)
T ss_dssp STTSSCCCHHHHHHHHHHHHSGG
T ss_pred hhccCCcCHHHHHHHHHHHhChh
Confidence 11234678999999999988654
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.16 E-value=2.7e-09 Score=96.50 Aligned_cols=208 Identities=15% Similarity=0.144 Sum_probs=124.7
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
.++|||||++.||.+++++|++.| .+|++.+|+... ..+++.+.+.. .
T Consensus 2 ~vAlVTGas~GIG~aia~~la~~G---~~Vvi~~r~~~~--~~~~~~~~~~~--------~------------------- 49 (266)
T d1mxha_ 2 PAAVITGGARRIGHSIAVRLHQQG---FRVVVHYRHSEG--AAQRLVAELNA--------A------------------- 49 (266)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSCHH--HHHHHHHHHHH--------H-------------------
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCchH--HHHHHHHHHHh--------h-------------------
Confidence 478999999999999999999999 899999998542 12233222211 1
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH-------hCcCEEEEcCcccCh---------------
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI-------SQTTIIFHIAATVRF--------------- 186 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~-------~~~d~Vih~a~~~~~--------------- 186 (366)
......+...|..+... ....+..++ ..+|++|||||....
T Consensus 50 ---------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~ 112 (266)
T d1mxha_ 50 ---------------RAGSAVLCKGDLSLSSS--LLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADA 112 (266)
T ss_dssp ---------------STTCEEEEECCCSSSTT--HHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC----------
T ss_pred ---------------cCCceEEEecccccchh--HHHHHHHHHHHHHHHhCCCCEEEECCccCCCCcccccccccchhcc
Confidence 12456666666654431 011222222 368999999996421
Q ss_pred ---hhhHHHHHHHHHHHHHHHHHHHHhc--------CCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcch
Q psy17528 187 ---DEHIRTAYNINVKGTQTILALAKRM--------KGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASD 255 (366)
Q Consensus 187 ---~~~~~~~~~~nv~~~~~ll~~a~~~--------~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~ 255 (366)
+......+..|..+........... .....++.+|+.......
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 166 (266)
T d1mxha_ 113 KPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAMTDLPL-------------------------- 166 (266)
T ss_dssp -CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEECCGGGGSCC--------------------------
T ss_pred cccccccccccccccccccchhhhhccccccccccccccccchhhhhccccccC--------------------------
Confidence 1122345555655555554444331 112334555554432111
Q ss_pred HHHHhhhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCc
Q psy17528 256 EEIALLNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGL 330 (366)
Q Consensus 256 ~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~ 330 (366)
+....|+.+|...+.+.+... +|++++.|.||.+..+...+ ...........
T Consensus 167 ------------~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~t~~~~~-----------~~~~~~~~~~~ 223 (266)
T d1mxha_ 167 ------------PGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLPPAMP-----------QETQEEYRRKV 223 (266)
T ss_dssp ------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCCSSSC-----------HHHHHHHHTTC
T ss_pred ------------cchhhhhhhHHHHhhhHHHHHHHhCccCcEEEEeccCcEeccccCC-----------HHHHHHHHhcC
Confidence 112789999999999987766 78999999999987653321 11222222221
Q ss_pred ceeecCCCCcccCcccHHHHHHHHHHHHHhhh
Q psy17528 331 IRVVQTDPNISMDVVPGDRVINAMAALAWYFL 362 (366)
Q Consensus 331 ~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~~ 362 (366)
+ + .+-+...+|+|++++.++....
T Consensus 224 p--l------~r~~~~peeva~~v~fL~s~~s 247 (266)
T d1mxha_ 224 P--L------GQSEASAAQIADAIAFLVSKDA 247 (266)
T ss_dssp T--T------TSCCBCHHHHHHHHHHHHSGGG
T ss_pred C--C------CCCCCCHHHHHHHHHHHhCchh
Confidence 1 0 1234679999999999886543
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=99.14 E-value=3.8e-09 Score=96.55 Aligned_cols=221 Identities=12% Similarity=0.032 Sum_probs=127.8
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+..++||||++.||.+++++|.+.| .+|++..|+.. ...+.+.+.++...-..... ...|.
T Consensus 2 ~pVAlITGas~GIG~aiA~~la~~G---a~V~i~~~~~~--~~~~~~~~~l~~~~~~~~~~--------------~~~d~ 62 (284)
T d1e7wa_ 2 VPVALVTGAAKRLGRSIAEGLHAEG---YAVCLHYHRSA--AEANALSATLNARRPNSAIT--------------VQADL 62 (284)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSCH--HHHHHHHHHHHHHSTTCEEE--------------EECCC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcC---CEEEEEeCCCH--HHHHHHHHHHHhhcCCceEE--------------EEeec
Confidence 3578999999999999999999999 89988877642 12233333322110000000 00000
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHh-------CcCEEEEcCcccChh-------------
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLIS-------QTTIIFHIAATVRFD------------- 187 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~-------~~d~Vih~a~~~~~~------------- 187 (366)
+........+..+.+|+++.+ ++.++++ ++|++|||||.....
T Consensus 63 -----------~~~~~~~~~~~~~~~dv~~~~------~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~ 125 (284)
T d1e7wa_ 63 -----------SNVATAPVSGADGSAPVTLFT------RCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPC 125 (284)
T ss_dssp -----------SSSCBCCCC----CCCBCHHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC---------
T ss_pred -----------ccccccccccccccccCCCHH------HHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhh
Confidence 000111223445566777665 5555543 689999999974210
Q ss_pred --------hhHHHHHHHHHHHHHHHHHHHHh---------cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHh
Q psy17528 188 --------EHIRTAYNINVKGTQTILALAKR---------MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALV 250 (366)
Q Consensus 188 --------~~~~~~~~~nv~~~~~ll~~a~~---------~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~ 250 (366)
.....++.+|+.+...+.+.+.+ .++...++.+++.......
T Consensus 126 ~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~s~~~~~~~--------------------- 184 (284)
T d1e7wa_ 126 VGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPL--------------------- 184 (284)
T ss_dssp ----HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCGGGSCSCEEEEEECCTTTTSCC---------------------
T ss_pred hhhHHHHHHHHHHHHhhheeeeeeeeccccchhhhhHHHhcCCCCcccccccccccCCc---------------------
Confidence 11234677888888877776542 1233467777776533111
Q ss_pred hhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHH
Q psy17528 251 AHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALG 325 (366)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~ 325 (366)
.....|+.+|...+.+.+... +|++++.|.||.+-.... .. ......
T Consensus 185 -----------------~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~t~~~~~---------~~--~~~~~~ 236 (284)
T d1e7wa_ 185 -----------------LGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVDD---------MP--PAVWEG 236 (284)
T ss_dssp -----------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCGGG---------SC--HHHHHH
T ss_pred -----------------cceeeeccccccchhhhHHHHHHhCCcccccccccccccccccc---------CC--HHHHHH
Confidence 111679999999999987766 789999999996422211 11 122222
Q ss_pred HhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhh
Q psy17528 326 AGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 326 ~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
.....+ ...-+...+|+|++++.++...
T Consensus 237 ~~~~~p--------l~~R~~~peeiA~~v~fL~S~~ 264 (284)
T d1e7wa_ 237 HRSKVP--------LYQRDSSAAEVSDVVIFLCSSK 264 (284)
T ss_dssp HHTTCT--------TTTSCBCHHHHHHHHHHHHSGG
T ss_pred HHhcCC--------CCCCCCCHHHHHHHHHHHhCch
Confidence 222211 0123667999999999988644
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=99.14 E-value=2.9e-10 Score=103.48 Aligned_cols=165 Identities=10% Similarity=0.037 Sum_probs=108.2
Q ss_pred cCCCCeEEEeCCcc--hHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccc
Q psy17528 45 FYKDQTIFITGATG--FLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGIT 122 (366)
Q Consensus 45 ~~~~~~ilItGatG--~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (366)
.+++|++|||||+| .||.+++++|.+.| .+|++..|+... ..+++.+
T Consensus 3 ~l~gK~~lItGaag~~GIG~aiA~~la~~G---a~Vil~~~~~~~--~~~~~~~-------------------------- 51 (268)
T d2h7ma1 3 LLDGKRILVSGIITDSSIAFHIARVAQEQG---AQLVLTGFDRLR--LIQRITD-------------------------- 51 (268)
T ss_dssp TTTTCEEEECCCSSTTCHHHHHHHHHHHTT---CEEEEEECSCHH--HHHHHHT--------------------------
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHcC---CEEEEEeCChHH--HHHHHHH--------------------------
Confidence 57899999999765 59999999999999 899999887531 1222221
Q ss_pred cccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH----------hCcCEEEEcCcccCh------
Q psy17528 123 HRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI----------SQTTIIFHIAATVRF------ 186 (366)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~----------~~~d~Vih~a~~~~~------ 186 (366)
....+...+.+|+.+.+ ....++ ..+|+++|++|....
T Consensus 52 --------------------~~~~~~~~~~~dv~~~~------~~~~~~~~v~~~~~~~~~ld~~i~~ag~~~~~~~~~~ 105 (268)
T d2h7ma1 52 --------------------RLPAKAPLLELDVQNEE------HLASLAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGIN 105 (268)
T ss_dssp --------------------TSSSCCCEEECCTTCHH------HHHHHHHHHHHHHCTTCCEEEEEECCCCCCGGGSTTS
T ss_pred --------------------HcCCceeeEeeeccccc------ccccccchhhhccccCCCcceeeecccccCccccccc
Confidence 12345667889999864 333332 246999999996421
Q ss_pred ------hhhHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHh
Q psy17528 187 ------DEHIRTAYNINVKGTQTILALAKRMKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIAL 260 (366)
Q Consensus 187 ------~~~~~~~~~~nv~~~~~ll~~a~~~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~ 260 (366)
...+...+..|+.......+...........+.++|.......
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~~------------------------------- 154 (268)
T d2h7ma1 106 PFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRAM------------------------------- 154 (268)
T ss_dssp CGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSSCC-------------------------------
T ss_pred cccccchhhhhhhhhhhhhHHHHHHHHHhhhcccccccccccccccccC-------------------------------
Confidence 1223345555666666555555443222334444443322111
Q ss_pred hhhcccCCCCchHHHHHHHHHHHHHHhc-----CCCCEEEEecCccccC
Q psy17528 261 LNEHIIGGKPNSYTLTKATAEDLVRQVG-----HELPICVLRPSIVFPT 304 (366)
Q Consensus 261 ~~~~~~~~~~~~Y~~sK~~~E~~l~~~~-----~gl~~~ilRp~~v~G~ 304 (366)
+....|+.+|...+.+.+... +++.+..|.||.|-.+
T Consensus 155 -------p~~~~y~~sK~a~~~ltr~lA~e~~~~gIrVN~V~PG~v~T~ 196 (268)
T d2h7ma1 155 -------PAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTL 196 (268)
T ss_dssp -------TTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCH
T ss_pred -------cccchhhccccchhhccccchhhhhccCCcceEEecCCCCCh
Confidence 112689999999999988766 7899999999998764
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.07 E-value=2.6e-09 Score=98.41 Aligned_cols=137 Identities=12% Similarity=0.020 Sum_probs=85.6
Q ss_pred hCcCEEEEcCcccC-----h----hhhHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCC
Q psy17528 172 SQTTIIFHIAATVR-----F----DEHIRTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVF 241 (366)
Q Consensus 172 ~~~d~Vih~a~~~~-----~----~~~~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~ 241 (366)
..+|++|||||... + ...+...+++|+.+...+.+.+... ..-...+.+++.......
T Consensus 118 G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------------ 185 (297)
T d1d7oa_ 118 GSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHFLPIMNPGGASISLTYIASERII------------ 185 (297)
T ss_dssp SCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSCC------------
T ss_pred CCCcccccccccccccccchhhhhcccccccccchhhhhhhhhhHHHHHhhcCCcceeeeehhhcccc------------
Confidence 37899999998632 1 2346778899999999988876643 122345555554322111
Q ss_pred ChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHHhc------CCCCEEEEecCccccCCCCCCCccccc
Q psy17528 242 TAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVG------HELPICVLRPSIVFPTLQEPMPLWIKG 315 (366)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~------~gl~~~ilRp~~v~G~~~~~~~~~~~~ 315 (366)
......|..+|...+.+.+... ++++++.|.||.|..+.....
T Consensus 186 -------------------------~~~~~~y~~aKaa~~~l~~~~a~e~~~~~gIrvN~I~PG~i~T~~~~~~------ 234 (297)
T d1d7oa_ 186 -------------------------PGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGSRAAKAI------ 234 (297)
T ss_dssp -------------------------TTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCBCCCSSCC------
T ss_pred -------------------------cccccceecccccccccccccchhccccceEEecccccccccchhhhhc------
Confidence 0112679999988877765432 589999999999987654321
Q ss_pred cchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHHHHHHHhh
Q psy17528 316 FNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAMAALAWYF 361 (366)
Q Consensus 316 ~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai~~~~~~~ 361 (366)
.....+........+ ..-+...+|+|++++.++...
T Consensus 235 -~~~~~~~~~~~~~~P---------lgR~~~peevA~~v~fL~S~~ 270 (297)
T d1d7oa_ 235 -GFIDTMIEYSYNNAP---------IQKTLTADEVGNAAAFLVSPL 270 (297)
T ss_dssp -SHHHHHHHHHHHHSS---------SCCCBCHHHHHHHHHHHTSGG
T ss_pred -cCCHHHHHHHHhCCC---------CCCCCCHHHHHHHHHHHhCch
Confidence 111222222222111 223678999999999988544
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.04 E-value=4.5e-09 Score=94.65 Aligned_cols=220 Identities=10% Similarity=-0.018 Sum_probs=115.9
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
||.|+||||++.||.+++++|.+.| .+|++++|++...
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~G---a~V~~~~~~~~~~--------------------------------------- 38 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAG---HQIVGIDIRDAEV--------------------------------------- 38 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSSSSE---------------------------------------
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECChHHH---------------------------------------
Confidence 5789999999999999999999999 8999999875321
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHH----hCcCEEEEcCcccChhhhHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLI----SQTTIIFHIAATVRFDEHIRTAYNINVKGTQT 203 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~----~~~d~Vih~a~~~~~~~~~~~~~~~nv~~~~~ 203 (366)
..|+.+... ......+.. ...|+++++|+.............+|..+...
T Consensus 39 ------------------------~~d~~~~~~--~~~~~~~~~~~~~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~ 92 (257)
T d1fjha_ 39 ------------------------IADLSTAEG--RKQAIADVLAKCSKGMDGLVLCAGLGPQTKVLGNVVSVNYFGATE 92 (257)
T ss_dssp ------------------------ECCTTSHHH--HHHHHHHHHTTCTTCCSEEEECCCCCTTCSSHHHHHHHHTHHHHH
T ss_pred ------------------------HHHhcCHHH--HHHHHHHHHHHhCCCCcEEEEcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 223333220 000111111 25799999999766555666667778777766
Q ss_pred HHHHHHh---cCCCcEEEEeeCcceecCccccccccCCCCCChHHHHHHhhhcchHHHHhhhhcccCC-CCchHHHHHHH
Q psy17528 204 ILALAKR---MKGLKSFVHVSTAYCNCDRKFIAEKFYPPVFTAEELSALVAHASDEEIALLNEHIIGG-KPNSYTLTKAT 279 (366)
Q Consensus 204 ll~~a~~---~~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~sK~~ 279 (366)
+.+.... .........+++.....-... ..+.. .....-...-+.......... ....|+.+|..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-------~~~~~g~~~~i~s~~~~~~~~~~~~~Y~asKaa 161 (257)
T d1fjha_ 93 LMDAFLPALKKGHQPAAVVISSVASAHLAFD----KNPLA-------LALEAGEEAKARAIVEHAGEQGGNLAYAGSKNA 161 (257)
T ss_dssp HHHHHHHHHHTSSSCEEEEECCGGGGSSCGG----GCTTH-------HHHHHTCHHHHHHHHHTCCTTHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhccCcceeeeeccccchhhh----hhhhh-------hhccCCcEEEEeeehhccCCCcchHHHHHHhhh
Confidence 6554322 113344555555322110000 00000 000000000000000000000 01369999999
Q ss_pred HHHHHHHhc-----CCCCEEEEecCccccCCCCCCCccccccchHHHHHHHHhcCcceeecCCCCcccCcccHHHHHHHH
Q psy17528 280 AEDLVRQVG-----HELPICVLRPSIVFPTLQEPMPLWIKGFNGVMALALGAGTGLIRVVQTDPNISMDVVPGDRVINAM 354 (366)
Q Consensus 280 ~E~~l~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~v~vdDva~ai 354 (366)
.+.+.+... +|++++.|.||.|-.+..... + . .........+. .....-+...+|+|+++
T Consensus 162 l~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~--~----~-~~~~~~~~~~~--------~~PlgR~g~p~eva~~v 226 (257)
T d1fjha_ 162 LTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAG--L----Q-DPRYGESIAKF--------VPPMGRRAEPSEMASVI 226 (257)
T ss_dssp HHHHHHHTHHHHHHTTCEEEEEEECC----------------------------C--------CCSTTSCCCTHHHHHHH
T ss_pred hhccccccccccccccccccccccCCcCChhHHhh--c----C-CHHHHHHHHhc--------CCCCCCCcCHHHHHHHH
Confidence 999998876 899999999999976543210 0 0 00011111110 01223467789999999
Q ss_pred HHHHHhh
Q psy17528 355 AALAWYF 361 (366)
Q Consensus 355 ~~~~~~~ 361 (366)
+.++...
T Consensus 227 ~fL~S~~ 233 (257)
T d1fjha_ 227 AFLMSPA 233 (257)
T ss_dssp HHHTSGG
T ss_pred HHHhCch
Confidence 9987544
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=98.99 E-value=1.4e-08 Score=95.77 Aligned_cols=96 Identities=11% Similarity=0.073 Sum_probs=69.4
Q ss_pred hCcCEEEEcCcccC---------hhhhHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeCcceecCccccccccCCCCC
Q psy17528 172 SQTTIIFHIAATVR---------FDEHIRTAYNINVKGTQTILALAKRM-KGLKSFVHVSTAYCNCDRKFIAEKFYPPVF 241 (366)
Q Consensus 172 ~~~d~Vih~a~~~~---------~~~~~~~~~~~nv~~~~~ll~~a~~~-~~~~~~v~iSS~~~~~~~~~~~e~~~~~p~ 241 (366)
.++|++||+||... ....+...+++|+.+...+.+.+.+. ....++|.+||....... |.
T Consensus 112 G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~~m~~~GsIv~iss~~~~~~~--------p~-- 181 (329)
T d1uh5a_ 112 GKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNIMKPQSSIISLTYHASQKVV--------PG-- 181 (329)
T ss_dssp CCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSCC--------TT--
T ss_pred CCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHHhhcccccccccceeehhcccc--------cc--
Confidence 47899999998542 12456778899999988888877653 233578889886543211 11
Q ss_pred ChHHHHHHhhhcchHHHHhhhhcccCCCCchHHHHHHHHHHHHHHhc------CCCCEEEEecCccccC
Q psy17528 242 TAEELSALVAHASDEEIALLNEHIIGGKPNSYTLTKATAEDLVRQVG------HELPICVLRPSIVFPT 304 (366)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~l~~~~------~gl~~~ilRp~~v~G~ 304 (366)
....|+.+|...+.+.+... +|+++..|.||.|-.+
T Consensus 182 ---------------------------y~~~y~asKaal~~ltr~lA~Ela~~~gIRVNaI~PG~i~T~ 223 (329)
T d1uh5a_ 182 ---------------------------YGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKSR 223 (329)
T ss_dssp ---------------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCT
T ss_pred ---------------------------cchhhhhhhccccccchhhHHHHhcccCcEEEEEecCcccch
Confidence 11569999999998887755 4899999999988653
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=98.71 E-value=4.5e-09 Score=91.63 Aligned_cols=86 Identities=16% Similarity=0.145 Sum_probs=65.8
Q ss_pred cccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccc
Q psy17528 43 QEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGIT 122 (366)
Q Consensus 43 ~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (366)
...+++|+|+||||+|.||..+++.|++.| .+|+++.|+.+.. +.+.+.+. ..
T Consensus 18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G---~~V~~~~r~~~~~---~~~~~~~~--------~~------------- 70 (191)
T d1luaa1 18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEG---AEVVLCGRKLDKA---QAAADSVN--------KR------------- 70 (191)
T ss_dssp TSCCTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSHHHH---HHHHHHHH--------HH-------------
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHhhc---cchhhcccchHHH---HHHHHHHH--------hc-------------
Confidence 345689999999999999999999999999 8999999985321 12222111 11
Q ss_pred cccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCccc
Q psy17528 123 HRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATV 184 (366)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~ 184 (366)
.++.+..+|+.+.+ ++.+++.++|+|||+||..
T Consensus 71 -----------------------~~~~~~~~d~~~~~------~~~~~~~~iDilin~Ag~g 103 (191)
T d1luaa1 71 -----------------------FKVNVTAAETADDA------SRAEAVKGAHFVFTAGAIG 103 (191)
T ss_dssp -----------------------HTCCCEEEECCSHH------HHHHHTTTCSEEEECCCTT
T ss_pred -----------------------cchhhhhhhcccHH------HHHHHhcCcCeeeecCccc
Confidence 23446778998877 8889999999999999863
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.70 E-value=0.00022 Score=58.83 Aligned_cols=120 Identities=13% Similarity=0.101 Sum_probs=75.2
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
|||.|+||+|.+|+.++..|...+ -+..+.++++.++... .+.+..-+.+ .
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~-l~~el~L~D~~~~~~~-~~g~a~Dl~~----~----------------------- 51 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEP-FMKDLVLIGREHSINK-LEGLREDIYD----A----------------------- 51 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCT-TCCEEEEEECGGGHHH-HHHHHHHHHH----H-----------------------
T ss_pred CEEEEECCCChHHHHHHHHHHhCC-cccccccccchhhhHh-hhcccccchh----c-----------------------
Confidence 579999999999999999998885 4578999998743210 1111110110 0
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh-hhhHHHHHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF-DEHIRTAYNINVKGTQTILAL 207 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~-~~~~~~~~~~nv~~~~~ll~~ 207 (366)
.......+.....--.+ .+.++++|+||-+||.... .++..+.++.|....+.+++.
T Consensus 52 ------------~~~~~~~~~~~~~~~~d----------~~~l~~aDvVVitAG~~~~~g~sR~dl~~~Na~iv~~i~~~ 109 (145)
T d1hyea1 52 ------------LAGTRSDANIYVESDEN----------LRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKK 109 (145)
T ss_dssp ------------HTTSCCCCEEEEEETTC----------GGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ------------ccccccCCccccCCcch----------HHHhccceEEEEecccccCCCCChhhhhhhhHHHHHHHHHH
Confidence 00111222222111111 1235789999999997543 346678899999999999999
Q ss_pred HHhcCCCcEEEEe
Q psy17528 208 AKRMKGLKSFVHV 220 (366)
Q Consensus 208 a~~~~~~~~~v~i 220 (366)
+.+. ..+.++.+
T Consensus 110 i~~~-~~~~iivV 121 (145)
T d1hyea1 110 IAEI-CDTKIFVI 121 (145)
T ss_dssp HHHH-CCCEEEEC
T ss_pred Hhcc-CCCeEEEE
Confidence 8887 34455544
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.62 E-value=0.00013 Score=60.21 Aligned_cols=116 Identities=14% Similarity=0.107 Sum_probs=76.3
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
.||.|+||+|.+|++++..|..+| -+..+.+++..+.. .+. .+ +.
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~~~-~~~elvLiDi~~~~---~~a-~D---------l~--------------------- 45 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKNSP-LVSRLTLYDIAHTP---GVA-AD---------LS--------------------- 45 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCT-TCSEEEEEESSSHH---HHH-HH---------HT---------------------
T ss_pred CeEEEECCCChHHHHHHHHHHhCC-ccceEEEEeccccc---hhh-HH---------Hh---------------------
Confidence 379999999999999999888875 56789999875321 110 01 00
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh-hhHHHHHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD-EHIRTAYNINVKGTQTILAL 207 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~-~~~~~~~~~nv~~~~~ll~~ 207 (366)
......... .-+.. . +..+.++++|+||.+||....+ ++..+..+.|....+.+++.
T Consensus 46 ------------~~~~~~~~~---~~~~~-~------~~~~~~~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~ 103 (144)
T d1mlda1 46 ------------HIETRATVK---GYLGP-E------QLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAA 103 (144)
T ss_dssp ------------TSSSSCEEE---EEESG-G------GHHHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHH
T ss_pred ------------hhhhhcCCC---eEEcC-C------ChHHHhCCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHH
Confidence 000011111 11211 1 4567789999999999975433 45567889999999999999
Q ss_pred HHhcCCCcEEEEeeC
Q psy17528 208 AKRMKGLKSFVHVST 222 (366)
Q Consensus 208 a~~~~~~~~~v~iSS 222 (366)
+.+. +.+.++.+-|
T Consensus 104 i~~~-~p~~iiivvt 117 (144)
T d1mlda1 104 CAQH-CPDAMICIIS 117 (144)
T ss_dssp HHHH-CTTSEEEECS
T ss_pred HHhc-CCCeEEEEec
Confidence 9887 4444544444
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=97.55 E-value=0.00021 Score=59.03 Aligned_cols=116 Identities=14% Similarity=0.154 Sum_probs=71.8
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
.+||.|+|+ |++|+.++..|...| -+..|+++++.+..... .. .| +.+-
T Consensus 5 ~~KI~IIGa-G~VG~~~A~~l~~~~-~~~elvL~D~~~~~~~g---~a-------~D-l~~a------------------ 53 (146)
T d1ez4a1 5 HQKVVLVGD-GAVGSSYAFAMAQQG-IAEEFVIVDVVKDRTKG---DA-------LD-LEDA------------------ 53 (146)
T ss_dssp BCEEEEECC-SHHHHHHHHHHHHHT-CCSEEEEECSSHHHHHH---HH-------HH-HHGG------------------
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcC-CCcEEEEeecccchhHH---HH-------HH-Hhcc------------------
Confidence 568999995 999999999999996 45789999987432110 00 00 1000
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh-hhhHHHHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF-DEHIRTAYNINVKGTQTILA 206 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~-~~~~~~~~~~nv~~~~~ll~ 206 (366)
.. ......++.+|.. .+.++|+||.++|.... .+...+....|....+.+.+
T Consensus 54 -------------~~-~~~~~~~~~~d~~-------------~~~~adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~ 106 (146)
T d1ez4a1 54 -------------QA-FTAPKKIYSGEYS-------------DCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVK 106 (146)
T ss_dssp -------------GG-GSCCCEEEECCGG-------------GGTTCSEEEECCCC----------CHHHHHHHHHHHHH
T ss_pred -------------cc-ccCCceEeeccHH-------------HhccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 00 0122344555542 24789999999997543 34556778889999999999
Q ss_pred HHHhcCCCcEEEEeeC
Q psy17528 207 LAKRMKGLKSFVHVST 222 (366)
Q Consensus 207 ~a~~~~~~~~~v~iSS 222 (366)
.+.+. ..+.++.+-|
T Consensus 107 ~i~~~-~p~aivivvt 121 (146)
T d1ez4a1 107 PVVDS-GFDGIFLVAA 121 (146)
T ss_dssp HHHHT-TCCSEEEECS
T ss_pred HHhhc-CCCcEEEEeC
Confidence 98887 5555555544
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.53 E-value=0.00047 Score=56.78 Aligned_cols=118 Identities=14% Similarity=0.103 Sum_probs=73.2
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
+||.|+|++|.+|++++..|.........+.+++..+. .. .+. -+ +.
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~-~~-g~a-~D---------l~--------------------- 47 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPV-TP-GVA-VD---------LS--------------------- 47 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTT-HH-HHH-HH---------HH---------------------
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccccc-ch-hHH-HH---------HH---------------------
Confidence 58999999999999999887544224578888887532 11 110 01 10
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccC-hhhhHHHHHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVR-FDEHIRTAYNINVKGTQTILAL 207 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~-~~~~~~~~~~~nv~~~~~ll~~ 207 (366)
..........+.+ .. .+ ..++++|+||.+||... ..++..++.+.|....+.+.+.
T Consensus 48 ------------h~~~~~~~~~~~~----~~------~~-~~~~~aDvvvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~ 104 (145)
T d2cmda1 48 ------------HIPTAVKIKGFSG----ED------AT-PALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQ 104 (145)
T ss_dssp ------------TSCSSCEEEEECS----SC------CH-HHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHH
T ss_pred ------------CCccccCCcEEEc----CC------Cc-cccCCCCEEEECCCccCCCCcchhhHHHHHHHHHHHHHHH
Confidence 1011112222211 11 23 35789999999999754 3345567889999999999999
Q ss_pred HHhcCCCcEEEEeeC
Q psy17528 208 AKRMKGLKSFVHVST 222 (366)
Q Consensus 208 a~~~~~~~~~v~iSS 222 (366)
+.+...-.-++.+|.
T Consensus 105 i~~~~p~aivivvtN 119 (145)
T d2cmda1 105 VAKTCPKACIGIITN 119 (145)
T ss_dssp HHHHCTTSEEEECSS
T ss_pred HHhhCCCcEEEEccC
Confidence 888733334555554
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=97.53 E-value=0.00055 Score=56.19 Aligned_cols=112 Identities=10% Similarity=0.045 Sum_probs=74.6
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCH---HHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSI---TQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
.||.|+||+|.+|+.++..|..++ -+..+.+++........ ...+.+.
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~~-l~~el~L~Di~~~~~~~~g~a~Dl~~~---------------------------- 51 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALRD-IADEVVFVDIPDKEDDTVGQAADTNHG---------------------------- 51 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CCSEEEEECCGGGHHHHHHHHHHHHHH----------------------------
T ss_pred CeEEEECCCCcHHHHHHHHHHhCC-CCCEEEEEecCCcccccceeecchhhc----------------------------
Confidence 379999999999999999999985 45788888864321100 0011110
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh-hhHHHHHHHHHHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD-EHIRTAYNINVKGTQTI 204 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~-~~~~~~~~~nv~~~~~l 204 (366)
.. ......+..+|..+ +.++|+|+-+||....+ ++..+..+.|....+.+
T Consensus 52 ---------------~~-~~~~~~i~~~~~~~-------------~~~aDiVvitaG~~~~~g~~R~dl~~~N~~I~~~i 102 (142)
T d1o6za1 52 ---------------IA-YDSNTRVRQGGYED-------------TAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDI 102 (142)
T ss_dssp ---------------HT-TTCCCEEEECCGGG-------------GTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHH
T ss_pred ---------------cc-ccCCceEeeCCHHH-------------hhhcCEEEEecccccccCCchhhHHHHHHHHHHHH
Confidence 00 11233444454321 46899999999976433 46778999999999999
Q ss_pred HHHHHhcCCCcEEEE
Q psy17528 205 LALAKRMKGLKSFVH 219 (366)
Q Consensus 205 l~~a~~~~~~~~~v~ 219 (366)
.+.+.+. ..+.++.
T Consensus 103 ~~~i~~~-~p~~i~i 116 (142)
T d1o6za1 103 QSSLDEH-NDDYISL 116 (142)
T ss_dssp HHHHHTT-CSCCEEE
T ss_pred HHHHHhc-CCCceEE
Confidence 9999987 4444433
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=97.43 E-value=0.0012 Score=53.97 Aligned_cols=113 Identities=13% Similarity=0.115 Sum_probs=70.5
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
+||.|+|+ |.+|+.++..|+..+ -+..+.++++.++...... . .+.+
T Consensus 2 ~KI~IIGa-G~VG~~~a~~l~~~~-l~~el~L~D~~~~~~~g~a--~---------Dl~~-------------------- 48 (142)
T d1y6ja1 2 SKVAIIGA-GFVGASAAFTMALRQ-TANELVLIDVFKEKAIGEA--M---------DINH-------------------- 48 (142)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTT-CSSEEEEECCC---CCHHH--H---------HHTT--------------------
T ss_pred CeEEEECC-CHHHHHHHHHHHhcC-CCCEEEEEeccCCccceee--e---------eecc--------------------
Confidence 47899996 999999999999986 5678999998876432211 0 0110
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccC-hhhhHHHHHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVR-FDEHIRTAYNINVKGTQTILAL 207 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~-~~~~~~~~~~~nv~~~~~ll~~ 207 (366)
............+|. +.++++|+|+-+||... ..+...+....|....+.+++.
T Consensus 49 ------------~~~~~~~~~~~~~~~-------------~~~~~adivvitag~~~~~~~~r~~l~~~N~~i~~~i~~~ 103 (142)
T d1y6ja1 49 ------------GLPFMGQMSLYAGDY-------------SDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQN 103 (142)
T ss_dssp ------------SCCCTTCEEEC--CG-------------GGGTTCSEEEECCCC------CHHHHHHHHHHHHHHHHHH
T ss_pred ------------CcccCCCeeEeeCcH-------------HHhCCCceEEEecccccCcCcchhHHhhHHHHHHHHHHHH
Confidence 111123334333332 23578999999999754 2345667889999999999999
Q ss_pred HHhcCCCcEEEEe
Q psy17528 208 AKRMKGLKSFVHV 220 (366)
Q Consensus 208 a~~~~~~~~~v~i 220 (366)
+.+. ..+.++.+
T Consensus 104 i~~~-~p~ai~iv 115 (142)
T d1y6ja1 104 IMKY-YNHGVILV 115 (142)
T ss_dssp HHHH-CCSCEEEE
T ss_pred hhcc-CCCceEEE
Confidence 8887 34444333
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.36 E-value=0.00054 Score=56.45 Aligned_cols=119 Identities=15% Similarity=0.129 Sum_probs=76.1
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
.++||.|+|| |++|+.++..|+..| -+..+.++++.++.... ...+ +.+-
T Consensus 5 ~~~KI~IiGa-G~vG~~~a~~l~~~~-l~~el~L~Di~~~~~~g--~a~D---------l~~~----------------- 54 (148)
T d1ldna1 5 GGARVVVIGA-GFVGASYVFALMNQG-IADEIVLIDANESKAIG--DAMD---------FNHG----------------- 54 (148)
T ss_dssp TSCEEEEECC-SHHHHHHHHHHHHHT-CCSEEEEECSSHHHHHH--HHHH---------HHHH-----------------
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhcC-CCceEEEEeeccccccc--hhcc---------HhhC-----------------
Confidence 3679999996 999999999999996 45789999987532110 0001 1000
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh-hhhHHHHHHHHHHHHHHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF-DEHIRTAYNINVKGTQTIL 205 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~-~~~~~~~~~~nv~~~~~ll 205 (366)
.......+.+..+|.. .++++|+||.++|.... .+...+....|....+.+.
T Consensus 55 --------------~~~~~~~~~~~~~d~~-------------~l~daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~ 107 (148)
T d1ldna1 55 --------------KVFAPKPVDIWHGDYD-------------DCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIV 107 (148)
T ss_dssp --------------TTSSSSCCEEEECCGG-------------GTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHH
T ss_pred --------------ccccCCCeEEEECCHH-------------HhccceeEEEecccccccCcchhHHHHHHHHHHHHHH
Confidence 1111233444444432 25789999999997543 3344567788999999999
Q ss_pred HHHHhcCCCcEEEEeeC
Q psy17528 206 ALAKRMKGLKSFVHVST 222 (366)
Q Consensus 206 ~~a~~~~~~~~~v~iSS 222 (366)
+.+.+...-..++.+|-
T Consensus 108 ~~i~~~~p~a~~ivvtN 124 (148)
T d1ldna1 108 ESVMASGFQGLFLVATN 124 (148)
T ss_dssp HHHHHHTCCSEEEECSS
T ss_pred HHHHhhCCCceEEEecC
Confidence 98887633233444443
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.17 E-value=0.00041 Score=57.10 Aligned_cols=35 Identities=20% Similarity=0.361 Sum_probs=31.8
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
.|+|+|.|| |++|+.+++.|.+.| ++|++.+|+..
T Consensus 2 ~K~IliiGa-G~~G~~~a~~L~~~g---~~V~v~dr~~~ 36 (182)
T d1e5qa1 2 TKSVLMLGS-GFVTRPTLDVLTDSG---IKVTVACRTLE 36 (182)
T ss_dssp CCEEEEECC-STTHHHHHHHHHTTT---CEEEEEESCHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCC---CEEEEEECChH
Confidence 689999986 999999999999998 79999999853
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.16 E-value=0.001 Score=54.75 Aligned_cols=39 Identities=15% Similarity=0.253 Sum_probs=31.3
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhC-CCccEEEEEEcCCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCC-PQIRKIILLIRTRG 86 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g-~~~~~V~~~~R~~~ 86 (366)
|++|.|.||||++|+.+++.|+++. ..+..++++.++.+
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s 40 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQL 40 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSST
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccc
Confidence 5689999999999999999998762 35567777776644
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=97.15 E-value=0.0011 Score=54.48 Aligned_cols=115 Identities=11% Similarity=0.166 Sum_probs=72.1
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHH-HHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSIT-QRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
|||.|+|+ |++|+.++..|+..| -+..+.++++++...... ..+.+.
T Consensus 2 kKI~IIGa-G~VG~~~a~~l~~~~-~~~elvL~Di~~~~~~g~~~Dl~~a------------------------------ 49 (146)
T d1hyha1 2 RKIGIIGL-GNVGAAVAHGLIAQG-VADDYVFIDANEAKVKADQIDFQDA------------------------------ 49 (146)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHT-CCSEEEEECSSHHHHHHHHHHHHHH------------------------------
T ss_pred CeEEEECc-CHHHHHHHHHHHhcC-CCceEEEEecccchhhhHHHhhhcc------------------------------
Confidence 78999995 999999999999986 457899998864321110 001110
Q ss_pred ccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh-----hhHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD-----EHIRTAYNINVKGTQ 202 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~-----~~~~~~~~~nv~~~~ 202 (366)
............+|.. .++++|+||-+||..... ....+..+.|....+
T Consensus 50 -------------~~~~~~~~~~~~~d~~-------------~l~~adiVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~ 103 (146)
T d1hyha1 50 -------------MANLEAHGNIVINDWA-------------ALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQ 103 (146)
T ss_dssp -------------GGGSSSCCEEEESCGG-------------GGTTCSEEEECCSCGGGTC-------CTTHHHHHHHHH
T ss_pred -------------ccccCCccceeccCHH-------------HhccccEEEEeccccccccccCCccHHHHHHHHHHHHH
Confidence 0011123344444432 247899999999975421 123346778999999
Q ss_pred HHHHHHHhcCCCcEEEEeeC
Q psy17528 203 TILALAKRMKGLKSFVHVST 222 (366)
Q Consensus 203 ~ll~~a~~~~~~~~~v~iSS 222 (366)
.+.+.+.+. ..+.++.+-|
T Consensus 104 ~i~~~i~~~-~p~aivivvt 122 (146)
T d1hyha1 104 SVGTNLKES-GFHGVLVVIS 122 (146)
T ss_dssp HHHHHHHHT-TCCSEEEECS
T ss_pred HHHHHHhhc-CCCeEEEEec
Confidence 999998887 4444544444
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=97.10 E-value=0.0054 Score=51.69 Aligned_cols=56 Identities=11% Similarity=-0.057 Sum_probs=42.0
Q ss_pred HHHHHhCcCEEEEcCcccC-hhhhHHHHHHHHHHHHHHHHHHHHhcCC-CcEEEEeeC
Q psy17528 167 EELLISQTTIIFHIAATVR-FDEHIRTAYNINVKGTQTILALAKRMKG-LKSFVHVST 222 (366)
Q Consensus 167 ~~~~~~~~d~Vih~a~~~~-~~~~~~~~~~~nv~~~~~ll~~a~~~~~-~~~~v~iSS 222 (366)
..+.++++|+||-++|... ..+...+++..|....+.+.+.+.+... -..++.+|.
T Consensus 94 ~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~N 151 (175)
T d7mdha1 94 PYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN 151 (175)
T ss_dssp HHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred chhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecC
Confidence 4567799999999999764 3456778999999999999999988523 234445543
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.10 E-value=0.0049 Score=50.60 Aligned_cols=56 Identities=11% Similarity=0.017 Sum_probs=41.0
Q ss_pred HHHHHhCcCEEEEcCcccCh-hhhHHHHHHHHHHHHHHHHHHHHhcCCCc-EEEEeeC
Q psy17528 167 EELLISQTTIIFHIAATVRF-DEHIRTAYNINVKGTQTILALAKRMKGLK-SFVHVST 222 (366)
Q Consensus 167 ~~~~~~~~d~Vih~a~~~~~-~~~~~~~~~~nv~~~~~ll~~a~~~~~~~-~~v~iSS 222 (366)
....++++|+||-++|.... .++..++...|+...+.+.+.+.+..+.. .++.+|.
T Consensus 74 ~~~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsN 131 (154)
T d1y7ta1 74 PKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN 131 (154)
T ss_dssp HHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred hhhhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC
Confidence 34667899999999997643 44667889999999999999988752322 3444443
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=97.09 E-value=0.0027 Score=51.89 Aligned_cols=112 Identities=13% Similarity=0.095 Sum_probs=73.2
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHH-HHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSIT-QRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
.||.|+|+ |.+|++++..|..+| -+..+.++++++...... ..+.+.
T Consensus 2 ~Ki~IIGa-G~VG~~~a~~l~~~~-l~~ElvL~D~~~~~~~g~a~Dl~~a------------------------------ 49 (143)
T d1llda1 2 TKLAVIGA-GAVGSTLAFAAAQRG-IAREIVLEDIAKERVEAEVLDMQHG------------------------------ 49 (143)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT-CCSEEEEECSSHHHHHHHHHHHHHT------------------------------
T ss_pred CEEEEECC-CHHHHHHHHHHHhcC-CCcEEEEEEeccccchhHHHHHHhc------------------------------
Confidence 57999996 999999999999986 457899999875321110 011110
Q ss_pred ccchhhhhhccccCCCCCCcEEEEe-ccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh-hhhHHHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIVC-GQLEADTFGLSARDEELLISQTTIIFHIAATVRF-DEHIRTAYNINVKGTQTIL 205 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~~-gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~-~~~~~~~~~~nv~~~~~ll 205 (366)
........+.. .|. +.+.++|+||-+||.... .++..+....|....+.+.
T Consensus 50 --------------~~~~~~~~i~~~~~~-------------~~~~daDvVVitaG~~~~~g~~R~dl~~~N~~i~~~i~ 102 (143)
T d1llda1 50 --------------SSFYPTVSIDGSDDP-------------EICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIM 102 (143)
T ss_dssp --------------GGGSTTCEEEEESCG-------------GGGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHH
T ss_pred --------------cccCCCceeecCCCH-------------HHhhCCcEEEEecccccCCCCchhhhhhhhHHHHHHHH
Confidence 00111223332 222 225789999999997653 3566778899999999999
Q ss_pred HHHHhcCCCcEEEEe
Q psy17528 206 ALAKRMKGLKSFVHV 220 (366)
Q Consensus 206 ~~a~~~~~~~~~v~i 220 (366)
..+.+. ..+.++.+
T Consensus 103 ~~i~~~-~p~ai~iv 116 (143)
T d1llda1 103 PNLVKV-APNAIYML 116 (143)
T ss_dssp HHHHHH-CTTSEEEE
T ss_pred HHHHhh-CCCeEEEE
Confidence 988887 44444443
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=97.08 E-value=0.0018 Score=54.00 Aligned_cols=120 Identities=12% Similarity=0.054 Sum_probs=77.2
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCH-HHHHHHHhhhhhhhhhhhcCCCCCCccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSI-TQRVYNYFNDAVFDRMRLECPNYADKVDIGIT 122 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (366)
...+.+||.|+|+ |.+|+.++..|...| -+..+.+++++++.... ...+.+.
T Consensus 16 ~~~~~~KV~IIGa-G~VG~~~A~~l~~~~-l~~ElvLiD~~~~~a~g~alDl~h~------------------------- 68 (160)
T d1i0za1 16 ATVPNNKITVVGV-GQVGMACAISILGKS-LADELALVDVLEDKLKGEMMDLQHG------------------------- 68 (160)
T ss_dssp CCCCSSEEEEECC-SHHHHHHHHHHHHTT-CCSEEEEECSCHHHHHHHHHHHHHT-------------------------
T ss_pred ccCCCCeEEEECC-CHHHHHHHHHHHhcC-CCcEEEEEEeccchhHHHHHHHhcc-------------------------
Confidence 3344679999996 999999999999996 55789999987432211 0111110
Q ss_pred cccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh-hhHHHHHHHHHHHH
Q psy17528 123 HRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD-EHIRTAYNINVKGT 201 (366)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~-~~~~~~~~~nv~~~ 201 (366)
............+|.. .+.++|+||.+||....+ ++..+..+.|....
T Consensus 69 ------------------~~~~~~~~~~~~~d~~-------------~~~~adiVVitAg~~~~~g~tR~~l~~~N~~i~ 117 (160)
T d1i0za1 69 ------------------SLFLQTPKIVADKDYS-------------VTANSKIVVVTAGVRQQEGESRLNLVQRNVNVF 117 (160)
T ss_dssp ------------------GGGCCCSEEEECSSGG-------------GGTTCSEEEECCSCCCCTTCCGGGGHHHHHHHH
T ss_pred ------------------ccccCCCeEEeccchh-------------hcccccEEEEecCCccccCcchHHHHHHHHHHH
Confidence 0001122233334432 257899999999976433 45566788899999
Q ss_pred HHHHHHHHhcCCCcE-EEEeeC
Q psy17528 202 QTILALAKRMKGLKS-FVHVST 222 (366)
Q Consensus 202 ~~ll~~a~~~~~~~~-~v~iSS 222 (366)
+.+...+.+. +.+- ++.+|.
T Consensus 118 ~~i~~~i~~~-~p~aiiivvtN 138 (160)
T d1i0za1 118 KFIIPQIVKY-SPDCIIIVVSN 138 (160)
T ss_dssp HHHHHHHHHH-CTTCEEEECSS
T ss_pred HHHHHHHHhc-CCCcEEEEeCC
Confidence 9999988886 4444 444444
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=97.08 E-value=0.002 Score=52.36 Aligned_cols=115 Identities=19% Similarity=0.174 Sum_probs=74.3
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
+||.|+|+ |.+|+.++..|+..+ -+..+.++++++... .-.-. |.. .-
T Consensus 1 mKI~IIGa-G~VG~~~a~~l~~~~-l~~el~L~Di~~~~~------~g~~~----Dl~-~~------------------- 48 (140)
T d1a5za1 1 MKIGIVGL-GRVGSSTAFALLMKG-FAREMVLIDVDKKRA------EGDAL----DLI-HG------------------- 48 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHT-CCSEEEEECSSHHHH------HHHHH----HHH-HH-------------------
T ss_pred CEEEEECc-CHHHHHHHHHHHhCC-CCCEEEEEecccccc------cchhc----ccc-cc-------------------
Confidence 58999996 999999999998886 567899999874321 11000 000 00
Q ss_pred cchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh-hhhHHHHHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRF-DEHIRTAYNINVKGTQTILAL 207 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~-~~~~~~~~~~nv~~~~~ll~~ 207 (366)
.+ .........+|.. .++++|+||-+||.... .....+....|....+.+.+.
T Consensus 49 ------------~~-~~~~~~~~~~~~~-------------~~~~adivvitag~~~~~g~~r~dl~~~N~~I~~~i~~~ 102 (140)
T d1a5za1 49 ------------TP-FTRRANIYAGDYA-------------DLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARN 102 (140)
T ss_dssp ------------GG-GSCCCEEEECCGG-------------GGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred ------------cc-ccccccccCCcHH-------------HhcCCCEEEEecccccCCCcchhhhhccccchHHHHHHH
Confidence 00 0123344444322 25789999999997543 345567888899999999999
Q ss_pred HHhcCCCcEEEEeeC
Q psy17528 208 AKRMKGLKSFVHVST 222 (366)
Q Consensus 208 a~~~~~~~~~v~iSS 222 (366)
+.+. ..+.++.+-|
T Consensus 103 i~~~-~p~aivivvt 116 (140)
T d1a5za1 103 VSKY-APDSIVIVVT 116 (140)
T ss_dssp HHHH-CTTCEEEECS
T ss_pred HHhc-CCCcEEEEeC
Confidence 8887 4444554433
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.06 E-value=0.0014 Score=52.27 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=30.1
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
|+|+|+|+ |.+|+.+++.|.+.| +.|+++++++
T Consensus 1 M~IvI~G~-G~~G~~la~~L~~~g---~~v~vid~d~ 33 (132)
T d1lssa_ 1 MYIIIAGI-GRVGYTLAKSLSEKG---HDIVLIDIDK 33 (132)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT---CEEEEEESCH
T ss_pred CEEEEECC-CHHHHHHHHHHHHCC---CCcceecCCh
Confidence 68999997 999999999999998 8899999874
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=97.04 E-value=0.00055 Score=56.83 Aligned_cols=118 Identities=14% Similarity=0.138 Sum_probs=74.4
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHH-HHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSIT-QRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
|.+||.|+|+ |.+|+.++..|...+ +..+++++.+++..... ..+.+... .
T Consensus 6 k~~KI~IIGa-G~VG~~lA~~l~~~~--~~el~L~D~~~~~~~g~a~Dl~~~~~--------~----------------- 57 (154)
T d1pzga1 6 RRKKVAMIGS-GMIGGTMGYLCALRE--LADVVLYDVVKGMPEGKALDLSHVTS--------V----------------- 57 (154)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHT--CCEEEEECSSSSHHHHHHHHHHHHHH--------H-----------------
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhCC--CceEEEEEeccccchhHHHHHhhhcc--------c-----------------
Confidence 4689999997 999999998888775 46888998876432111 11111000 0
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh------hhHHHHHHHHHH
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD------EHIRTAYNINVK 199 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~------~~~~~~~~~nv~ 199 (366)
. ........ .. .+...++++|+|+-++|..... ....+....|..
T Consensus 58 ---------------~---~~~~~~~~-----~~------~~~~~~~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~ 108 (154)
T d1pzga1 58 ---------------V---DTNVSVRA-----EY------SYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSK 108 (154)
T ss_dssp ---------------T---TCCCCEEE-----EC------SHHHHHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHH
T ss_pred ---------------c---CCeeEEec-----cC------chhhhhcCCCeEEEecccccCCCCCCcccchhhhhhhhHH
Confidence 0 00000111 11 3456678999999999975432 244567888999
Q ss_pred HHHHHHHHHHhcCCCcEEEEeeC
Q psy17528 200 GTQTILALAKRMKGLKSFVHVST 222 (366)
Q Consensus 200 ~~~~ll~~a~~~~~~~~~v~iSS 222 (366)
..+.+++.+.+. +.+.++.+-|
T Consensus 109 iv~~i~~~i~~~-~p~aiviivs 130 (154)
T d1pzga1 109 IIREIGQNIKKY-CPKTFIIVVT 130 (154)
T ss_dssp HHHHHHHHHHHH-CTTCEEEECC
T ss_pred HHHHHHHHHHhc-CCCcEEEEeC
Confidence 999999998887 4455555444
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.83 E-value=0.0013 Score=54.86 Aligned_cols=121 Identities=9% Similarity=0.001 Sum_probs=74.8
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCH-HHHHHHHhhhhhhhhhhhcCCCCCCccccccc
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSI-TQRVYNYFNDAVFDRMRLECPNYADKVDIGIT 122 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (366)
+.++..||.|+|+ |.+|+.++..|...| -+..+.+++++++.... ...+.+.
T Consensus 15 ~~~~~~KI~IIGa-G~VG~~~A~~l~~~~-l~~elvL~D~~~~~a~g~alDl~~~------------------------- 67 (159)
T d2ldxa1 15 DKLSRCKITVVGV-GDVGMACAISILLKG-LADELALVDADTDKLRGEALDLQHG------------------------- 67 (159)
T ss_dssp CCCCCCEEEEECC-SHHHHHHHHHHHTTT-SCSEEEEECSCHHHHHHHHHHHHHT-------------------------
T ss_pred ccCCCCeEEEECC-CHHHHHHHHHHHhcC-CCCEEEEEeCCchhhhccHHHHhCc-------------------------
Confidence 3455578999995 999999999999986 45789999887432110 0111110
Q ss_pred cccccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh-hhHHHHHHHHHHHH
Q psy17528 123 HRVYNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD-EHIRTAYNINVKGT 201 (366)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~-~~~~~~~~~nv~~~ 201 (366)
.............|.. .+.++|+||.+||..... ++..+.++.|....
T Consensus 68 ------------------~~~~~~~~~~~~~d~~-------------~~~~adivvitag~~~~~~~~R~dll~~N~~i~ 116 (159)
T d2ldxa1 68 ------------------SLFLSTPKIVFGKDYN-------------VSANSKLVIITAGARMVSGQTRLDLLQRNVAIM 116 (159)
T ss_dssp ------------------TTTCSCCEEEEESSGG-------------GGTTEEEEEECCSCCCCTTTCSSCTTHHHHHHH
T ss_pred ------------------chhcCCCeEEeccchh-------------hhccccEEEEecccccCCCCCHHHHHHHHHHHH
Confidence 1111122333333332 247899999999975433 34456778899999
Q ss_pred HHHHHHHHhcCCCcEEEEeeC
Q psy17528 202 QTILALAKRMKGLKSFVHVST 222 (366)
Q Consensus 202 ~~ll~~a~~~~~~~~~v~iSS 222 (366)
+.+...+.+...-.-++.+|.
T Consensus 117 ~~i~~~i~~~~p~~ivivvtN 137 (159)
T d2ldxa1 117 KAIVPGVIQNSPDCKIIVVTN 137 (159)
T ss_dssp HHHTTTHHHHSTTCEEEECSS
T ss_pred HHHHHHHhccCCCeEEEEeCC
Confidence 998888777623233444444
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=96.82 E-value=0.0048 Score=49.95 Aligned_cols=114 Identities=13% Similarity=0.069 Sum_probs=73.1
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCccccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNY 128 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (366)
+||.|+|| |.+|+.++..|...+ -+..+.++++++....... .++ .. ....
T Consensus 1 mKI~IIGa-G~VG~~la~~l~~~~-l~~el~L~Di~~~~~~~~~--~d~-~~----~~~~-------------------- 51 (142)
T d1guza1 1 MKITVIGA-GNVGATTAFRLAEKQ-LARELVLLDVVEGIPQGKA--LDM-YE----SGPV-------------------- 51 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT-CCSEEEEECSSSSHHHHHH--HHH-HT----THHH--------------------
T ss_pred CEEEEECc-CHHHHHHHHHHHhCC-CCceEEEeccccccchhhh--hhh-hc----ccch--------------------
Confidence 57999996 999999999998885 4578999998875322111 010 00 0000
Q ss_pred cchhhhhhccccCCCCCCcEEEEe-ccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh-hhhHHHHHHHHHHHHHHHHH
Q psy17528 129 FNDAVFDRMRLECPNYADKVDIVC-GQLEADTFGLSARDEELLISQTTIIFHIAATVRF-DEHIRTAYNINVKGTQTILA 206 (366)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~~-gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~-~~~~~~~~~~nv~~~~~ll~ 206 (366)
......+.. .|. +.++++|+|+-+||...- .+...+....|....+.+.+
T Consensus 52 ---------------~~~~~~i~~~~~~-------------~~~~dadvvvitag~~~~~g~~r~~l~~~N~~i~~~i~~ 103 (142)
T d1guza1 52 ---------------GLFDTKVTGSNDY-------------ADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTD 103 (142)
T ss_dssp ---------------HTCCCEEEEESCG-------------GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ---------------hcccceEEecCCH-------------HHhcCCeEEEEEEecCCCCCCchHHHHHHHHHHHHHHHH
Confidence 012223322 221 235789999999997543 34566788889999999999
Q ss_pred HHHhcCCCcEEEEe
Q psy17528 207 LAKRMKGLKSFVHV 220 (366)
Q Consensus 207 ~a~~~~~~~~~v~i 220 (366)
.+.+. ..+-++.+
T Consensus 104 ~i~~~-~p~aiviv 116 (142)
T d1guza1 104 NIMKH-SKNPIIIV 116 (142)
T ss_dssp HHHHH-CSSCEEEE
T ss_pred Hhhcc-CCCeEEEE
Confidence 88876 34444443
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.79 E-value=0.0067 Score=49.27 Aligned_cols=115 Identities=17% Similarity=0.041 Sum_probs=74.3
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCH-HHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSI-TQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
|||.|+|+ |.+|+.++..|..+| -+..+.+++++++.... ...+.+...
T Consensus 1 MKI~IIGa-G~VG~~~a~~l~~~~-~~~elvL~Di~~~~~~g~alDl~~~~~---------------------------- 50 (142)
T d1ojua1 1 MKLGFVGA-GRVGSTSAFTCLLNL-DVDEIALVDIAEDLAVGEAMDLAHAAA---------------------------- 50 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHS-CCSEEEEECSSHHHHHHHHHHHHHHHH----------------------------
T ss_pred CEEEEECc-CHHHHHHHHHHHhcC-cCceEEEEecccchhhHHHHHHhhhcc----------------------------
Confidence 58999996 999999999999886 56889999987532111 011111100
Q ss_pred ccchhhhhhccccCCCCCCcEEEE-eccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccCh-hhhHHHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIV-CGQLEADTFGLSARDEELLISQTTIIFHIAATVRF-DEHIRTAYNINVKGTQTIL 205 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~-~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~-~~~~~~~~~~nv~~~~~ll 205 (366)
.......+. ..|. +.++++|+||-+||.... .....+....|....+.+.
T Consensus 51 ---------------~~~~~~~i~~~~d~-------------~~~~~adiVvitag~~~~~g~~r~~l~~~n~~i~~~i~ 102 (142)
T d1ojua1 51 ---------------GIDKYPKIVGGADY-------------SLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIA 102 (142)
T ss_dssp ---------------TTTCCCEEEEESCG-------------GGGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHH
T ss_pred ---------------ccCCCCccccCCCH-------------HHhccccEEEEeccccCCCCCchHHHHHHhhHHHHHHH
Confidence 001112222 2333 235789999999996543 3456678888999999999
Q ss_pred HHHHhcCCCcEEEEeeC
Q psy17528 206 ALAKRMKGLKSFVHVST 222 (366)
Q Consensus 206 ~~a~~~~~~~~~v~iSS 222 (366)
+.+.+. +.+.++.+-|
T Consensus 103 ~~i~~~-~p~aivivvt 118 (142)
T d1ojua1 103 KKIVEN-APESKILVVT 118 (142)
T ss_dssp HHHHTT-STTCEEEECS
T ss_pred HHHHhh-CCCcEEEEec
Confidence 999887 4444544444
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=96.69 E-value=0.0037 Score=52.58 Aligned_cols=85 Identities=13% Similarity=0.071 Sum_probs=58.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRV 125 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (366)
.++++|+|.|+ |..|.+++..|.+.| +.+|+++.|+.+.......+.+.+. ..
T Consensus 16 l~~k~vlIlGa-GGaarai~~al~~~g--~~~i~i~nR~~~~~~~~~~l~~~~~--------~~---------------- 68 (182)
T d1vi2a1 16 IKGKTMVLLGA-GGASTAIGAQGAIEG--LKEIKLFNRRDEFFDKALAFAQRVN--------EN---------------- 68 (182)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTT--CSEEEEEECSSTTHHHHHHHHHHHH--------HH----------------
T ss_pred cCCCEEEEECC-cHHHHHHHHHHhhcC--CceEeeeccchHHHHHHHHHHHHHH--------hh----------------
Confidence 46799999996 788999999999985 5899999998764332222222221 11
Q ss_pred ccccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcc
Q psy17528 126 YNYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAAT 183 (366)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~ 183 (366)
........++.+.. .+.+....+|+|||+...
T Consensus 69 --------------------~~~~~~~~~~~~~~------~~~~~~~~~diiIN~Tp~ 100 (182)
T d1vi2a1 69 --------------------TDCVVTVTDLADQQ------AFAEALASADILTNGTKV 100 (182)
T ss_dssp --------------------SSCEEEEEETTCHH------HHHHHHHTCSEEEECSST
T ss_pred --------------------cCcceEeeeccccc------chhhhhcccceeccccCC
Confidence 12234456666654 667777899999999775
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=96.58 E-value=0.011 Score=48.33 Aligned_cols=37 Identities=14% Similarity=0.334 Sum_probs=28.1
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhC-CCccEEEEEEcCC
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCC-PQIRKIILLIRTR 85 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g-~~~~~V~~~~R~~ 85 (366)
|+|.|.|||||+|+.+++.|++.. +.+..+..+..+.
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~ 38 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQ 38 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSC
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccc
Confidence 579999999999999999998742 3445666655543
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.58 E-value=0.0076 Score=49.41 Aligned_cols=56 Identities=16% Similarity=0.124 Sum_probs=39.2
Q ss_pred HHHHHhCcCEEEEcCcccChh-hhHHHHHHHHHHHHHHHHHHHHhcCCCc-EEEEeeC
Q psy17528 167 EELLISQTTIIFHIAATVRFD-EHIRTAYNINVKGTQTILALAKRMKGLK-SFVHVST 222 (366)
Q Consensus 167 ~~~~~~~~d~Vih~a~~~~~~-~~~~~~~~~nv~~~~~ll~~a~~~~~~~-~~v~iSS 222 (366)
..+.++++|+||-++|....+ +...+.++.|....+.+.+.+.+..+.. .++.+|.
T Consensus 73 ~~~~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsN 130 (154)
T d5mdha1 73 EEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGN 130 (154)
T ss_dssp HHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred cccccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecC
Confidence 346778999999999976533 3456678889999999998877642333 3344443
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.51 E-value=0.0013 Score=54.07 Aligned_cols=35 Identities=26% Similarity=0.308 Sum_probs=31.9
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
|||.|+||+|.+|+++++.|.+.| ++|.+.+|+++
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G---~~V~l~~R~~e 35 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLG---HEIVVGSRREE 35 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTT---CEEEEEESSHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCC---CEEEEEECCHH
Confidence 579999999999999999999999 89999999753
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=96.45 E-value=0.0026 Score=53.80 Aligned_cols=36 Identities=36% Similarity=0.349 Sum_probs=28.0
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRT 84 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~ 84 (366)
|++|.|.|||||+|+.+++-|.++ +.+.-+.+..++
T Consensus 1 MikVaIvGATGyvG~eLirlL~~H-P~~ei~~l~s~~ 36 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNH-PEAKITYLSSRT 36 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHC-TTEEEEEEECST
T ss_pred CeEEEEECCCcHHHHHHHHHHHhC-CCceEEEeeccc
Confidence 568999999999999999988877 665544444443
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=96.44 E-value=0.0059 Score=49.53 Aligned_cols=114 Identities=18% Similarity=0.197 Sum_probs=67.5
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHH-HHHHHHhhhhhhhhhhhcCCCCCCcccccccccccc
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSIT-QRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYN 127 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (366)
+||.|+|+ |.+|+.++..|...+ +..+.+++..++..... ..+.+ ....
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~--l~dl~l~D~~~~~~~~~~~Dl~~--------~~~~------------------- 51 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKE--LGDIVLLDIVEGVPQGKALDLYE--------ASPI------------------- 51 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHT--CSEEEEECSSSSHHHHHHHHHHT--------THHH-------------------
T ss_pred CeEEEECC-CHHHHHHHHHHHhCC--cceEEEEeeccccchhHHHHhhc--------cccc-------------------
Confidence 58999996 999999999998875 45788998876532111 11100 0000
Q ss_pred ccchhhhhhccccCCCCCCcEEEE-eccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccC-hhhhHHHHHHHHHHHHHHHH
Q psy17528 128 YFNDAVFDRMRLECPNYADKVDIV-CGQLEADTFGLSARDEELLISQTTIIFHIAATVR-FDEHIRTAYNINVKGTQTIL 205 (366)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~~-~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~-~~~~~~~~~~~nv~~~~~ll 205 (366)
......+. ..|.. .++++|+||-+||... ......+....|....+.++
T Consensus 52 ----------------~~~~~~i~~~~d~~-------------~~~~advvvitag~~~~~~~~r~dl~~~N~~i~~~i~ 102 (142)
T d1uxja1 52 ----------------EGFDVRVTGTNNYA-------------DTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACI 102 (142)
T ss_dssp ----------------HTCCCCEEEESCGG-------------GGTTCSEEEECCSCC---------CHHHHHHHHHHHH
T ss_pred ----------------cCCCCEEEecCcHH-------------HhcCCCEEEEeeeccCCcCcchhHHHhHHHHHHHHHH
Confidence 00112222 23322 2478999999999754 33455677888999999999
Q ss_pred HHHHhcCCCcEEEEeeC
Q psy17528 206 ALAKRMKGLKSFVHVST 222 (366)
Q Consensus 206 ~~a~~~~~~~~~v~iSS 222 (366)
..+.+. ..+-++.+-|
T Consensus 103 ~~i~k~-~p~aivivvt 118 (142)
T d1uxja1 103 SQAAPL-SPNAVIIMVN 118 (142)
T ss_dssp HHHGGG-CTTCEEEECS
T ss_pred HHHhcc-CCCceEEEeC
Confidence 988886 4444444433
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.33 E-value=0.0015 Score=53.36 Aligned_cols=37 Identities=27% Similarity=0.313 Sum_probs=28.9
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRT 84 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~ 84 (366)
.++|.|.|||||+|+.+++-|.++.+...++..+..+
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~ 38 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASA 38 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeec
Confidence 3689999999999999999997655455666666544
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=96.21 E-value=0.0096 Score=51.99 Aligned_cols=39 Identities=21% Similarity=0.225 Sum_probs=32.3
Q ss_pred cCCCCeEEEeCC----------------cchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 45 FYKDQTIFITGA----------------TGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 45 ~~~~~~ilItGa----------------tG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
.+++++||||+| +|-.|.+|++.+.+.| ..|+++....+
T Consensus 3 dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~G---a~V~li~g~~~ 57 (223)
T d1u7za_ 3 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRG---ANVTLVSGPVS 57 (223)
T ss_dssp TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTT---CEEEEEECSCC
T ss_pred ccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcC---Cchhhhhcccc
Confidence 466888888854 7889999999999999 88888877643
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=95.92 E-value=0.017 Score=45.32 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=28.5
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
|+++|.|+ |-+|+++++.|.+.| +.|++++.++
T Consensus 1 k~~iIiG~-G~~G~~la~~L~~~g---~~vvvid~d~ 33 (134)
T d2hmva1 1 KQFAVIGL-GRFGGSIVKELHRMG---HEVLAVDINE 33 (134)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTT---CCCEEEESCH
T ss_pred CEEEEECC-CHHHHHHHHHHHHCC---CeEEEecCcH
Confidence 56888986 999999999999999 7788888864
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=95.76 E-value=0.016 Score=47.80 Aligned_cols=38 Identities=26% Similarity=0.489 Sum_probs=33.0
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.+++++|||+|+ |-+|..+++.|...| +.+|++..|+.
T Consensus 21 ~l~~~~ilviGa-G~~g~~v~~~L~~~g--~~~i~v~nRt~ 58 (159)
T d1gpja2 21 SLHDKTVLVVGA-GEMGKTVAKSLVDRG--VRAVLVANRTY 58 (159)
T ss_dssp CCTTCEEEEESC-CHHHHHHHHHHHHHC--CSEEEEECSSH
T ss_pred CcccCeEEEECC-CHHHHHHHHHHHhcC--CcEEEEEcCcH
Confidence 457899999997 999999999999986 46899999974
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=95.73 E-value=0.014 Score=43.41 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=32.3
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
+++|+|+|.|. |-.|..+++.|.+.| .+|++.+.+..
T Consensus 3 ~~~K~v~ViGl-G~sG~s~a~~L~~~g---~~v~~~D~~~~ 39 (93)
T d2jfga1 3 YQGKNVVIIGL-GLTGLSCVDFFLARG---VTPRVMDTRMT 39 (93)
T ss_dssp CTTCCEEEECC-SHHHHHHHHHHHHTT---CCCEEEESSSS
T ss_pred cCCCEEEEEeE-CHHHHHHHHHHHHCC---CEEEEeeCCcC
Confidence 67899999997 778999999999998 78888888654
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=95.71 E-value=0.005 Score=51.70 Aligned_cols=36 Identities=28% Similarity=0.452 Sum_probs=28.3
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRT 84 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~ 84 (366)
|++|.|.|||||+|+.|++-|.++ |.+.-..+..++
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~H-P~~ei~~l~~~s 36 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRH-PHMTITALTVSA 36 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHC-TTEEEEEEEEET
T ss_pred CcEEEEECcccHHHHHHHHHHHhC-CCCceEeeEeec
Confidence 579999999999999999999887 665444444443
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=95.61 E-value=0.023 Score=46.43 Aligned_cols=116 Identities=12% Similarity=0.108 Sum_probs=70.7
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCH-HHHHHHHhhhhhhhhhhhcCCCCCCccccccccccc
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSI-TQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVY 126 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (366)
..||-|+|+ |.+|+.++..|...+ +..+.++++.++.... ...+.+... +
T Consensus 3 ~~KI~IIGa-G~VG~~~a~~l~~~~--l~el~L~Di~~~~~~g~a~Dl~~~~~------~-------------------- 53 (150)
T d1t2da1 3 KAKIVLVGS-GMIGGVMATLIVQKN--LGDVVLFDIVKNMPHGKALDTSHTNV------M-------------------- 53 (150)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTT--CCEEEEECSSSSHHHHHHHHHHTHHH------H--------------------
T ss_pred CCeEEEECC-CHHHHHHHHHHHhCC--CCeEEEEeccCCcceeeecchhhhcc------c--------------------
Confidence 358999995 999999997666663 5789999987643211 111111100 0
Q ss_pred cccchhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHHHhCcCEEEEcCcccChh------hhHHHHHHHHHHH
Q psy17528 127 NYFNDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELLISQTTIIFHIAATVRFD------EHIRTAYNINVKG 200 (366)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~~~~~d~Vih~a~~~~~~------~~~~~~~~~nv~~ 200 (366)
...+..+...+. .+.++++|+|+-++|..... ....+..+.|...
T Consensus 54 -----------------~~~~~~v~~~~~------------~~~~~~advvvitag~~~~~g~~~~~~~R~~l~~~N~~i 104 (150)
T d1t2da1 54 -----------------AYSNCKVSGSNT------------YDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKI 104 (150)
T ss_dssp -----------------HTCCCCEEEECC------------GGGGTTCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHH
T ss_pred -----------------cCCCcEEEeccc------------ccccCCCcEEEEecccccCCCCCccccchhHHHHHHHHH
Confidence 001222222211 12347899999999975432 1245678889999
Q ss_pred HHHHHHHHHhcCCCcEEEEeeC
Q psy17528 201 TQTILALAKRMKGLKSFVHVST 222 (366)
Q Consensus 201 ~~~ll~~a~~~~~~~~~v~iSS 222 (366)
.+.+.+.+++. ..+.++.+-|
T Consensus 105 v~~i~~~i~~~-~p~aivivvt 125 (150)
T d1t2da1 105 MIEIGGHIKKN-CPNAFIIVVT 125 (150)
T ss_dssp HHHHHHHHHHH-CTTSEEEECS
T ss_pred HHHHHHHHHhc-CCCeEEEEec
Confidence 99999998887 4444444433
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=95.59 E-value=0.0054 Score=51.29 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=33.6
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
..++++|||+||+|.+|...++-....| .+|++++|++
T Consensus 27 v~~G~~VlV~ga~ggvG~~aiqlak~~G---a~vi~~~~~~ 64 (182)
T d1v3va2 27 VKGGETVLVSAAAGAVGSVVGQIAKLKG---CKVVGAAGSD 64 (182)
T ss_dssp CCSSCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEESSH
T ss_pred CCCCCEEEEEeCCCchhHHHHHHHHccC---CEEEEeCCCH
Confidence 3468999999999999999999998888 8999999874
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=95.53 E-value=0.0058 Score=44.59 Aligned_cols=38 Identities=26% Similarity=0.380 Sum_probs=33.0
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCC
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGS 87 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~ 87 (366)
++.+|||+||+|.+|+..++-+...| .+|++.++++++
T Consensus 31 ~~~~vlI~gasGgVG~~aiQlak~~G---~~Vi~~t~s~~k 68 (77)
T d1o8ca2 31 QDGEIVVTGASGGVGSTAVALLHKLG---YQVVAVSGREST 68 (77)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTT---CCEEEEESCGGG
T ss_pred CCCcEEEEeCCCcHHHHHHHHHHHcC---CeEEEEECCHHH
Confidence 47899999999999999999888887 789999987643
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=95.20 E-value=0.0093 Score=50.31 Aligned_cols=37 Identities=27% Similarity=0.477 Sum_probs=28.4
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcC
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRT 84 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~ 84 (366)
+..+|.|.|||||+|+.+++-|.++ |.+.-+.+.+++
T Consensus 4 ~kikVaIlGATGyvG~elirLL~~H-P~~ei~~l~S~~ 40 (183)
T d2cvoa1 4 EEVRIAVLGASGYTGAEIVRLLANH-PQFRIKVMTADR 40 (183)
T ss_dssp SCEEEEEESCSSHHHHHHHHHHTTC-SSEEEEEEECST
T ss_pred CccEEEEECcccHHHHHHHHHHHhC-CCceEEEEeccc
Confidence 4568999999999999999999887 665444443333
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=95.00 E-value=0.021 Score=47.10 Aligned_cols=38 Identities=13% Similarity=0.202 Sum_probs=32.9
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
.++.+|+|+||+|-+|...++-+...| .+|++++++++
T Consensus 26 ~~g~~VlI~ga~G~vG~~aiqlak~~G---~~vi~~~~~~~ 63 (171)
T d1iz0a2 26 RPGEKVLVQAAAGALGTAAVQVARAMG---LRVLAAASRPE 63 (171)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTT---CEEEEEESSGG
T ss_pred CCCCEEEEEeccccchhhhhhhhcccc---ccccccccccc
Confidence 358899999999999999999888887 68999888754
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.00 E-value=0.011 Score=49.01 Aligned_cols=36 Identities=19% Similarity=0.157 Sum_probs=31.7
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
++.+|||+||+|.+|...++-+...| .+|+++++++
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~g---~~vi~~~~~~ 60 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMIG---ARIYTTAGSD 60 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHT---CEEEEEESSH
T ss_pred CCCEEEEECCCCCcccccchhhcccc---ccceeeeccc
Confidence 47899999999999999999998888 7888888764
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=94.75 E-value=0.018 Score=46.45 Aligned_cols=35 Identities=23% Similarity=0.327 Sum_probs=31.9
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCC
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGS 87 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~ 87 (366)
|||+|+|+ |.+|+.++..|.+.| +.|.+++|+...
T Consensus 1 MkI~IiGa-G~iG~~~a~~L~~~G---~~V~~~~r~~~~ 35 (167)
T d1ks9a2 1 MKITVLGC-GALGQLWLTALCKQG---HEVQGWLRVPQP 35 (167)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT---CEEEEECSSCCS
T ss_pred CEEEEECc-CHHHHHHHHHHHHCC---CceEEEEcCHHH
Confidence 68999997 999999999999999 899999998653
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=94.71 E-value=0.014 Score=46.98 Aligned_cols=37 Identities=30% Similarity=0.293 Sum_probs=33.2
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
.+++|.|.||.|.+|+.+++.|.+.| +.|.+.+|...
T Consensus 8 ~~~kI~iIGg~G~mG~~la~~L~~~G---~~V~~~d~~~~ 44 (152)
T d2pv7a2 8 DIHKIVIVGGYGKLGGLFARYLRASG---YPISILDREDW 44 (152)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTT---CCEEEECTTCG
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcC---CCcEecccccc
Confidence 36799999999999999999999999 78889999754
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=94.62 E-value=0.02 Score=46.96 Aligned_cols=33 Identities=15% Similarity=0.074 Sum_probs=30.5
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
|||.|+|+ |.+|+.++..|.++| +.|.+++|++
T Consensus 2 k~iaIiGa-G~~G~~~A~~l~~~G---~~V~~~~r~~ 34 (184)
T d1bg6a2 2 KTYAVLGL-GNGGHAFAAYLALKG---QSVLAWDIDA 34 (184)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT---CEEEEECSCH
T ss_pred CEEEEECc-cHHHHHHHHHHHHCC---CEEEEEECCH
Confidence 79999996 999999999999999 8999999974
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=94.47 E-value=0.1 Score=39.81 Aligned_cols=42 Identities=21% Similarity=0.199 Sum_probs=34.5
Q ss_pred cccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 41 PIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 41 ~~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
|+.=.+++++|+|.|+ |-+|...++.|++.| .+|++++...+
T Consensus 5 Pi~l~l~~k~vlVvG~-G~va~~ka~~ll~~g---a~v~v~~~~~~ 46 (113)
T d1pjqa1 5 PIFCQLRDRDCLIVGG-GDVAERKARLLLEAG---ARLTVNALTFI 46 (113)
T ss_dssp EEEECCBTCEEEEECC-SHHHHHHHHHHHHTT---BEEEEEESSCC
T ss_pred ceEEEeCCCEEEEECC-CHHHHHHHHHHHHCC---CeEEEEeccCC
Confidence 4444567999999995 999999999999998 78888876543
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.46 E-value=0.041 Score=45.95 Aligned_cols=38 Identities=26% Similarity=0.304 Sum_probs=33.4
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCC
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGS 87 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~ 87 (366)
++.+|||+||+|.+|+..++-....| .+|++.++++.+
T Consensus 31 ~g~~VLI~gaaGGVG~~aiQlak~~G---a~Viat~~s~~k 68 (176)
T d1xa0a2 31 ERGPVLVTGATGGVGSLAVSMLAKRG---YTVEASTGKAAE 68 (176)
T ss_dssp GGCCEEESSTTSHHHHHHHHHHHHTT---CCEEEEESCTTC
T ss_pred CCCEEEEEeccchHHHHHHHHHHHcC---CceEEecCchHH
Confidence 37899999999999999999988888 888999988654
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=94.45 E-value=0.018 Score=48.78 Aligned_cols=38 Identities=21% Similarity=0.362 Sum_probs=32.7
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+.++|++|.|.|| |..|++++..|.++| ++|.+..|++
T Consensus 3 ~~~~m~KI~ViGa-G~wGtAlA~~La~~g---~~V~l~~r~~ 40 (189)
T d1n1ea2 3 ELLYLNKAVVFGS-GAFGTALAMVLSKKC---REVCVWHMNE 40 (189)
T ss_dssp CCCCEEEEEEECC-SHHHHHHHHHHHTTE---EEEEEECSCH
T ss_pred ccceeceEEEECC-CHHHHHHHHHHHHcC---CeEEEEEecH
Confidence 3456788999995 899999999999998 8999999863
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=94.31 E-value=0.068 Score=43.72 Aligned_cols=37 Identities=19% Similarity=0.180 Sum_probs=33.1
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
++.+|+|+||+|.+|..+++-....| .+|+++++++.
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~~G---a~Vi~~~~s~~ 64 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKALG---AKLIGTVGTAQ 64 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHT---CEEEEEESSHH
T ss_pred CCCEEEEEccccccchHHHHHHHHhC---CeEeecccchH
Confidence 47899999999999999999998888 78999999853
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.29 E-value=0.018 Score=47.08 Aligned_cols=34 Identities=32% Similarity=0.452 Sum_probs=26.1
Q ss_pred eEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEc
Q psy17528 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIR 83 (366)
Q Consensus 50 ~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R 83 (366)
+|.|.|||||+|..|++-|.++...+..+..+..
T Consensus 3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s 36 (154)
T d2gz1a1 3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLAS 36 (154)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEEC
T ss_pred EEEEECCCcHHHHHHHHHHHcCCCCceEEEEecc
Confidence 7999999999999999877666324556665554
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=94.10 E-value=0.093 Score=40.40 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=30.9
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
..+|.|.| +|.+|.-++....+.| .+|++++.+++
T Consensus 11 ~~kigIlG-gGQL~rMla~aA~~lG---~~v~v~d~~~~ 45 (111)
T d1kjqa2 11 ATRVMLLG-SGELGKEVAIECQRLG---VEVIAVDRYAD 45 (111)
T ss_dssp CCEEEEES-CSHHHHHHHHHHHTTT---CEEEEEESSTT
T ss_pred CCEEEEEe-CCHHHHHHHHHHHHCC---CEEEEEcCCCC
Confidence 45899999 5999999999999998 88999998764
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=94.05 E-value=0.054 Score=47.05 Aligned_cols=40 Identities=30% Similarity=0.349 Sum_probs=34.1
Q ss_pred cccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 43 QEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 43 ~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
|+.++.++|+|.|+ |.+|++++..|.+.| +.++++++...
T Consensus 25 Q~kL~~~~VliiG~-GglGs~va~~La~~G--vg~i~lvD~D~ 64 (247)
T d1jw9b_ 25 QEALKDSRVLIVGL-GGLGCAASQYLASAG--VGNLTLLDFDT 64 (247)
T ss_dssp HHHHHHCEEEEECC-SHHHHHHHHHHHHHT--CSEEEEECCCB
T ss_pred HHHHhCCCEEEECC-CHHHHHHHHHHHHcC--CCeEEEECCcc
Confidence 45677899999995 889999999999997 68999988754
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.75 E-value=0.083 Score=43.02 Aligned_cols=38 Identities=16% Similarity=0.093 Sum_probs=31.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGS 87 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~ 87 (366)
.++.+|+|+|+ |.+|...++.+...| .+|+++++++.+
T Consensus 26 ~~g~~vlI~Ga-G~vG~~a~q~ak~~G---~~vi~~~~~~~k 63 (168)
T d1piwa2 26 GPGKKVGIVGL-GGIGSMGTLISKAMG---AETYVISRSSRK 63 (168)
T ss_dssp STTCEEEEECC-SHHHHHHHHHHHHHT---CEEEEEESSSTT
T ss_pred CCCCEEEEECC-CCcchhHHHHhhhcc---ccccccccchhH
Confidence 35889999996 999999888777777 689999998654
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.49 E-value=0.12 Score=42.80 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=29.5
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
|+|.|.|+ |-.|++++..|.++| ++|.+..|..
T Consensus 1 MkI~ViGa-G~~GtalA~~la~~g---~~V~l~~r~~ 33 (180)
T d1txga2 1 MIVSILGA-GAMGSALSVPLVDNG---NEVRIWGTEF 33 (180)
T ss_dssp CEEEEESC-CHHHHHHHHHHHHHC---CEEEEECCGG
T ss_pred CEEEEECC-CHHHHHHHHHHHHCC---CEEEEEEecc
Confidence 68999995 999999999999998 8999998853
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.33 E-value=0.045 Score=46.23 Aligned_cols=36 Identities=14% Similarity=0.300 Sum_probs=32.3
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
.-++|.|.|| |.+|+.++..++..| +.|+++++++.
T Consensus 3 ~IkkvaViGa-G~mG~~iA~~~a~~G---~~V~l~D~~~~ 38 (192)
T d1f0ya2 3 IVKHVTVIGG-GLMGAGIAQVAAATG---HTVVLVDQTED 38 (192)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTT---CEEEEECSCHH
T ss_pred eeEEEEEECc-CHHHHHHHHHHHhCC---CcEEEEECChH
Confidence 3479999996 999999999999999 89999999864
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=93.07 E-value=0.13 Score=42.10 Aligned_cols=36 Identities=22% Similarity=0.152 Sum_probs=31.0
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.++++|+|.|+ |..+.+++..|.+.| .+|+++.|+.
T Consensus 16 ~~~k~vlIlGa-GGaarai~~al~~~g---~~i~I~nRt~ 51 (170)
T d1nyta1 16 RPGLRILLIGA-GGASRGVLLPLLSLD---CAVTITNRTV 51 (170)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTT---CEEEEECSSH
T ss_pred CCCCEEEEECC-cHHHHHHHHHhcccc---eEEEeccchH
Confidence 45899999996 778999999999987 4799999975
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=93.04 E-value=0.07 Score=41.48 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=32.1
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
+.++++|.|| |++|..++..|.+.| .+|+++.|.+.
T Consensus 29 ~~~~vvIIGg-G~iG~E~A~~l~~~g---~~Vtli~~~~~ 64 (121)
T d1d7ya2 29 PQSRLLIVGG-GVIGLELAATARTAG---VHVSLVETQPR 64 (121)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTT---CEEEEEESSSS
T ss_pred cCCeEEEECc-chhHHHHHHHhhccc---ceEEEEeeccc
Confidence 3589999995 999999999999998 89999999864
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=92.99 E-value=0.047 Score=45.10 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=32.9
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGS 87 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~ 87 (366)
+.+|||+||+|.+|...++-....| .+|++.++++++
T Consensus 24 ~~~VLV~gaaGgVG~~avQlAk~~G---a~Viat~~s~~k 60 (167)
T d1tt7a2 24 KGSVLVTGATGGVGGIAVSMLNKRG---YDVVASTGNREA 60 (167)
T ss_dssp GCCEEEESTTSHHHHHHHHHHHHHT---CCEEEEESSSST
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcC---CceEEEecCHHH
Confidence 5689999999999999999888888 789999998654
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=92.99 E-value=0.069 Score=41.38 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=31.7
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGS 87 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~ 87 (366)
.++++|.|| |++|..++..|.+.| .+|+++.|.+.-
T Consensus 32 ~~~vvIiGg-G~iG~E~A~~l~~~g---~~Vtlv~~~~~l 67 (122)
T d1xhca2 32 SGEAIIIGG-GFIGLELAGNLAEAG---YHVKLIHRGAMF 67 (122)
T ss_dssp HSEEEEEEC-SHHHHHHHHHHHHTT---CEEEEECSSSCC
T ss_pred CCcEEEECC-cHHHHHHHHHhhccc---ceEEEEeccccc
Confidence 478999985 999999999999998 899999997654
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=92.96 E-value=0.066 Score=43.47 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=30.5
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
..+.+|+|+| +|.+|...+.-+...| .+|+++++++.
T Consensus 25 ~~g~~vlV~G-~G~vG~~~~~~ak~~G---a~vi~v~~~~~ 61 (170)
T d1e3ja2 25 QLGTTVLVIG-AGPIGLVSVLAAKAYG---AFVVCTARSPR 61 (170)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHHTT---CEEEEEESCHH
T ss_pred CCCCEEEEEc-ccccchhhHhhHhhhc---ccccccchHHH
Confidence 3578999998 6899999988887777 68999998743
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=92.65 E-value=0.22 Score=38.25 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=31.5
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
.++++|.|| |+||..++..|.+.| .+|+++.|.+.
T Consensus 22 p~~i~IiG~-G~ig~E~A~~l~~~G---~~Vtiv~~~~~ 56 (119)
T d3lada2 22 PGKLGVIGA-GVIGLELGSVWARLG---AEVTVLEAMDK 56 (119)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTT---CEEEEEESSSS
T ss_pred CCeEEEECC-ChHHHHHHHHHHHcC---CceEEEEeecc
Confidence 578999995 999999999999999 89999998764
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.53 E-value=0.087 Score=40.28 Aligned_cols=35 Identities=17% Similarity=0.337 Sum_probs=31.6
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
.++++|.|| |++|..++..|.+.| .+|+++.|.+.
T Consensus 22 p~~v~IiGg-G~ig~E~A~~l~~~G---~~Vtlve~~~~ 56 (117)
T d1ebda2 22 PKSLVVIGG-GYIGIELGTAYANFG---TKVTILEGAGE 56 (117)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTT---CEEEEEESSSS
T ss_pred CCeEEEECC-Cccceeeeeeecccc---cEEEEEEecce
Confidence 478999995 999999999999999 89999999764
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=92.47 E-value=0.13 Score=42.37 Aligned_cols=36 Identities=31% Similarity=0.325 Sum_probs=30.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.++++|+|.|+ |..+..++..|.+.+ .+|+++.|+.
T Consensus 16 ~~~k~vlIlGa-GGaarai~~aL~~~~---~~i~I~nR~~ 51 (171)
T d1p77a1 16 RPNQHVLILGA-GGATKGVLLPLLQAQ---QNIVLANRTF 51 (171)
T ss_dssp CTTCEEEEECC-SHHHHTTHHHHHHTT---CEEEEEESSH
T ss_pred CCCCEEEEECC-cHHHHHHHHHHcccC---ceeeeccchH
Confidence 46889999996 777999999998764 7899999985
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.43 E-value=0.1 Score=40.47 Aligned_cols=34 Identities=12% Similarity=0.201 Sum_probs=29.8
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.+++.|.|| |+||..++..|.+.| .+|+++.|+.
T Consensus 20 P~~vvIIGg-G~iG~E~A~~l~~lG---~~Vtii~~~~ 53 (122)
T d1h6va2 20 PGKTLVVGA-SYVALECAGFLAGIG---LDVTVMVRSI 53 (122)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTT---CCEEEEESSS
T ss_pred CCeEEEECC-CccHHHHHHHHhhcC---CeEEEEEech
Confidence 468999995 999999999999999 7888888864
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=92.42 E-value=0.096 Score=40.64 Aligned_cols=36 Identities=14% Similarity=0.350 Sum_probs=31.8
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
+.++|+|.|| |++|..++..|.+.| .+|+++.|.+.
T Consensus 29 ~~k~vvViGg-G~iG~E~A~~l~~~g---~~Vtlie~~~~ 64 (123)
T d1nhpa2 29 EVNNVVVIGS-GYIGIEAAEAFAKAG---KKVTVIDILDR 64 (123)
T ss_dssp TCCEEEEECC-SHHHHHHHHHHHHTT---CEEEEEESSSS
T ss_pred CCCEEEEECC-hHHHHHHHHHhhccc---eEEEEEEecCc
Confidence 3679999985 999999999999998 89999988764
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=92.15 E-value=0.051 Score=45.55 Aligned_cols=35 Identities=14% Similarity=0.123 Sum_probs=31.2
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
-++|.|.|| |.+|+.++..++..| ++|+++++++.
T Consensus 4 I~~vaViGa-G~mG~~iA~~~a~~G---~~V~l~D~~~~ 38 (186)
T d1wdka3 4 VKQAAVLGA-GIMGGGIAYQSASKG---TPILMKDINEH 38 (186)
T ss_dssp CSSEEEECC-HHHHHHHHHHHHHTT---CCEEEECSSHH
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCC---CeEEEEECCHH
Confidence 468999996 999999999999999 88999999753
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=92.06 E-value=0.1 Score=41.45 Aligned_cols=37 Identities=14% Similarity=0.249 Sum_probs=31.4
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
++|+|+|.|| |++|..++..|.+.++. .+|+++.+.+
T Consensus 1 ~gkrivIvGg-G~~G~e~A~~l~~~~~~-~~Vtlie~~~ 37 (186)
T d1fcda1 1 AGRKVVVVGG-GTGGATAAKYIKLADPS-IEVTLIEPNT 37 (186)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHCTT-SEEEEECSCS
T ss_pred CCCcEEEECc-cHHHHHHHHHHHHcCCC-CcEEEEECCC
Confidence 4789999996 99999999999999754 4788888765
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=92.03 E-value=0.13 Score=42.17 Aligned_cols=38 Identities=24% Similarity=0.330 Sum_probs=30.9
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
.++.+|+|+|+ |-+|...+.-+...| ..+|+++++++.
T Consensus 27 ~~G~~VlV~Ga-G~iG~~~~~~ak~~G--a~~Vi~~~~~~~ 64 (182)
T d1vj0a2 27 FAGKTVVIQGA-GPLGLFGVVIARSLG--AENVIVIAGSPN 64 (182)
T ss_dssp CBTCEEEEECC-SHHHHHHHHHHHHTT--BSEEEEEESCHH
T ss_pred CCCCEEEEECC-Cccchhheecccccc--cccccccccccc
Confidence 35789999996 899999888888776 358999998743
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.00 E-value=0.075 Score=50.51 Aligned_cols=40 Identities=25% Similarity=0.329 Sum_probs=32.4
Q ss_pred cccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 43 QEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 43 ~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+..++..+|||.|+ |.+|+++++.|...| +.++++++...
T Consensus 32 ~~~l~~~kVlvvG~-GglG~ei~k~L~~~G--vg~i~lvD~D~ 71 (426)
T d1yovb1 32 QFLLDTCKVLVIGA-GGLGCELLKNLALSG--FRQIHVIDMDT 71 (426)
T ss_dssp HHHHHHCCEEEECS-STTHHHHHHHHHTTT--CCCEEEECCCB
T ss_pred HHHHhcCeEEEECC-CHHHHHHHHHHHHcC--CCeEEEEECCC
Confidence 34456789999997 669999999999987 57888888754
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=91.74 E-value=0.28 Score=38.91 Aligned_cols=75 Identities=11% Similarity=0.177 Sum_probs=52.6
Q ss_pred eEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCCcCHHHHHHHHhhhhhhhhhhhcCCCCCCcccccccccccccc
Q psy17528 50 TIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGSTSITQRVYNYFNDAVFDRMRLECPNYADKVDIGITHRVYNYF 129 (366)
Q Consensus 50 ~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (366)
.|+|.|. |-+|..+++.|.+.| ..|++++..+.. ..+++.+.
T Consensus 5 HiII~G~-g~~g~~l~~~L~~~~---~~v~vId~d~~~--~~~~~~~~-------------------------------- 46 (153)
T d1id1a_ 5 HFIVCGH-SILAINTILQLNQRG---QNVTVISNLPED--DIKQLEQR-------------------------------- 46 (153)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTT---CCEEEEECCCHH--HHHHHHHH--------------------------------
T ss_pred EEEEECC-CHHHHHHHHHHHHcC---CCEEEEeccchh--HHHHHHHh--------------------------------
Confidence 5899986 899999999999998 778888876431 11111111
Q ss_pred chhhhhhccccCCCCCCcEEEEeccCCcCCCCCCHHHHHHH-HhCcCEEEEcCc
Q psy17528 130 NDAVFDRMRLECPNYADKVDIVCGQLEADTFGLSARDEELL-ISQTTIIFHIAA 182 (366)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~i~~~~gDl~~~~~gl~~~~~~~~-~~~~d~Vih~a~ 182 (366)
....+.++.||.++++ .+.++ ++.++.||-+..
T Consensus 47 --------------~~~~~~vi~Gd~~d~~------~L~~a~i~~a~~vi~~~~ 80 (153)
T d1id1a_ 47 --------------LGDNADVIPGDSNDSS------VLKKAGIDRCRAILALSD 80 (153)
T ss_dssp --------------HCTTCEEEESCTTSHH------HHHHHTTTTCSEEEECSS
T ss_pred --------------hcCCcEEEEccCcchH------HHHHhccccCCEEEEccc
Confidence 1247889999999976 45443 357899997754
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.70 E-value=0.1 Score=42.16 Aligned_cols=36 Identities=28% Similarity=0.348 Sum_probs=30.3
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
|++|+|.| .|.+|..+++.|.+.|+. .+|++.+|+.
T Consensus 1 Mk~I~IIG-~G~mG~sla~~L~~~g~~-~~I~~~D~~~ 36 (171)
T d2g5ca2 1 MQNVLIVG-VGFMGGSFAKSLRRSGFK-GKIYGYDINP 36 (171)
T ss_dssp CCEEEEES-CSHHHHHHHHHHHHTTCC-SEEEEECSCH
T ss_pred CCEEEEEc-cCHHHHHHHHHHHhcCCC-eEEEEEECCh
Confidence 46899998 599999999999999843 4788888874
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=91.58 E-value=0.096 Score=42.31 Aligned_cols=33 Identities=27% Similarity=0.371 Sum_probs=29.5
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
|+|.|.|+ |.+|+.+++.|.+.| ++|++.+|++
T Consensus 1 MkI~iIG~-G~mG~~lA~~l~~~g---~~V~~~d~~~ 33 (165)
T d2f1ka2 1 MKIGVVGL-GLIGASLAGDLRRRG---HYLIGVSRQQ 33 (165)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT---CEEEEECSCH
T ss_pred CEEEEEee-cHHHHHHHHHHHHCC---CEEEEEECCc
Confidence 57999985 999999999999998 8899999874
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=91.50 E-value=0.11 Score=40.07 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=31.4
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
.++|+|.|| |++|..++..|.+.| .+|+++.|.+.
T Consensus 22 p~~v~IiGg-G~iG~E~A~~l~~~g---~~Vtlv~~~~~ 56 (117)
T d1onfa2 22 SKKIGIVGS-GYIAVELINVIKRLG---IDSYIFARGNR 56 (117)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHTTT---CEEEEECSSSS
T ss_pred CCEEEEECC-chHHHHHHHHHHhcc---ccceeeehhcc
Confidence 478999995 999999999999998 89999999764
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.28 E-value=0.15 Score=41.58 Aligned_cols=37 Identities=19% Similarity=0.189 Sum_probs=31.9
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
-++.+|||+||+|.+|...++-+...| .+|+++++++
T Consensus 27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G---~~vi~~~~~~ 63 (174)
T d1yb5a2 27 KAGESVLVHGASGGVGLAACQIARAYG---LKILGTAGTE 63 (174)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTT---CEEEEEESSH
T ss_pred CCCCEEEEEeccccccccccccccccC---cccccccccc
Confidence 357899999999999999999888887 6888888763
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=91.16 E-value=0.3 Score=40.52 Aligned_cols=37 Identities=16% Similarity=0.190 Sum_probs=32.4
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
+.+++|.|.| .|-||..+++.|..-| .+|+..+|...
T Consensus 40 l~gk~vgIiG-~G~IG~~va~~l~~~g---~~v~~~d~~~~ 76 (181)
T d1qp8a1 40 IQGEKVAVLG-LGEIGTRVGKILAALG---AQVRGFSRTPK 76 (181)
T ss_dssp CTTCEEEEES-CSTHHHHHHHHHHHTT---CEEEEECSSCC
T ss_pred ccCceEEEec-cccccccceeeeeccc---ccccccccccc
Confidence 6799999999 5999999999999888 78999988653
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=91.14 E-value=0.081 Score=43.99 Aligned_cols=37 Identities=27% Similarity=0.377 Sum_probs=32.4
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGS 87 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~ 87 (366)
+.+|||+||+|.+|...++-....| .+|++++|++..
T Consensus 32 ~~~vlV~gasGGVG~~aiQlAk~~G---a~Via~~~~~~k 68 (177)
T d1o89a2 32 DGEIVVTGASGGVGSTAVALLHKLG---YQVVAVSGREST 68 (177)
T ss_dssp GCEEEESSTTSHHHHHHHHHHHHTT---CCEEEEESCGGG
T ss_pred CCcEEEEEccccchHHHHHHHHHcC---CCeEEEecchhH
Confidence 4689999999999999999998888 789999997653
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=91.09 E-value=0.39 Score=39.86 Aligned_cols=37 Identities=14% Similarity=0.051 Sum_probs=31.9
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
+.+++|.|.| .|.||..+++.|..-| .+|+..++...
T Consensus 42 l~~~~vgiiG-~G~IG~~va~~l~~fg---~~v~~~d~~~~ 78 (188)
T d1sc6a1 42 ARGKKLGIIG-YGHIGTQLGILAESLG---MYVYFYDIENK 78 (188)
T ss_dssp STTCEEEEEC-CSHHHHHHHHHHHHTT---CEEEEECSSCC
T ss_pred ccceEEEEee-cccchhhhhhhccccc---ceEeecccccc
Confidence 5689999998 7999999999998887 88999988643
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=91.00 E-value=0.14 Score=39.12 Aligned_cols=35 Identities=20% Similarity=0.229 Sum_probs=31.1
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
.++|+|.|| |++|..++..|.+.| .+|+++.|.+.
T Consensus 21 p~~vvIiGg-G~ig~E~A~~l~~~G---~~Vtlve~~~~ 55 (116)
T d1gesa2 21 PERVAVVGA-GYIGVELGGVINGLG---AKTHLFEMFDA 55 (116)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTT---CEEEEECSSSS
T ss_pred CCEEEEECC-ChhhHHHHHHhhccc---cEEEEEeecch
Confidence 478999985 999999999999998 79999999763
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=90.91 E-value=0.26 Score=39.75 Aligned_cols=38 Identities=24% Similarity=0.225 Sum_probs=31.5
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
-++.+|+|+|++|-+|...+..+...| ..+|++.++++
T Consensus 26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g--~~~V~~~~~~~ 63 (170)
T d1jvba2 26 DPTKTLLVVGAGGGLGTMAVQIAKAVS--GATIIGVDVRE 63 (170)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHT--CCEEEEEESSH
T ss_pred CCCCEEEEEeccccceeeeeecccccc--cccccccccch
Confidence 357899999999999999988888776 36888888874
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=90.75 E-value=0.38 Score=39.05 Aligned_cols=38 Identities=18% Similarity=0.320 Sum_probs=28.7
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
|+..+|.|.| +|.+|+..++.|.+. +.+.-|-+.+|+.
T Consensus 1 M~kirvgiiG-~G~ig~~~~~~l~~~-~~~elvav~~~~~ 38 (170)
T d1f06a1 1 MTNIRVAIVG-YGNLGRSVEKLIAKQ-PDMDLVGIFSRRA 38 (170)
T ss_dssp CCCEEEEEEC-CSHHHHHHHHHHTTC-SSEEEEEEEESSS
T ss_pred CCcceEEEEC-ChHHHHHHHHHHHhC-CCcEEEEEEeccc
Confidence 4556899998 699999999998876 5665565666654
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=90.59 E-value=0.16 Score=38.58 Aligned_cols=35 Identities=14% Similarity=0.262 Sum_probs=30.9
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
.++++|.|| |++|..++..|.+.| .+|+++.|.+.
T Consensus 21 p~~vvIiGg-G~~G~E~A~~l~~~g---~~Vtlve~~~~ 55 (115)
T d1lvla2 21 PQHLVVVGG-GYIGLELGIAYRKLG---AQVSVVEARER 55 (115)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHHT---CEEEEECSSSS
T ss_pred CCeEEEECC-CHHHHHHHHHHhhcc---cceEEEeeecc
Confidence 478999985 999999999999999 89999999754
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=90.56 E-value=0.14 Score=41.61 Aligned_cols=37 Identities=11% Similarity=0.167 Sum_probs=29.4
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
-++.+|+|.|+ |.+|...++-+...| .++++++++.+
T Consensus 29 ~~G~~VlI~Ga-G~vG~~a~qlak~~G---a~~i~~~~~~~ 65 (168)
T d1uufa2 29 GPGKKVGVVGI-GGLGHMGIKLAHAMG---AHVVAFTTSEA 65 (168)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTT---CEEEEEESSGG
T ss_pred CCCCEEEEecc-chHHHHHHHHhhccc---ccchhhccchh
Confidence 34789999986 889999888887777 66778887654
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=90.56 E-value=0.17 Score=39.77 Aligned_cols=36 Identities=17% Similarity=0.398 Sum_probs=32.0
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
+.++|+|.|| |++|..++..|.+.| .+|+++.+.+.
T Consensus 34 ~~k~v~VIGg-G~iG~E~A~~l~~~g---~~Vtvie~~~~ 69 (133)
T d1q1ra2 34 ADNRLVVIGG-GYIGLEVAATAIKAN---MHVTLLDTAAR 69 (133)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTT---CEEEEECSSSS
T ss_pred cCCEEEEECC-chHHHHHHHHHHhhC---cceeeeeeccc
Confidence 3689999985 999999999999998 89999999764
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.50 E-value=0.17 Score=39.18 Aligned_cols=35 Identities=17% Similarity=0.213 Sum_probs=31.4
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
.++++|.|| |+||..++..|.+.| .+|+++.|.+.
T Consensus 23 p~~~vIiG~-G~ig~E~A~~l~~lG---~~Vtii~~~~~ 57 (122)
T d1v59a2 23 PKRLTIIGG-GIIGLEMGSVYSRLG---SKVTVVEFQPQ 57 (122)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTT---CEEEEECSSSS
T ss_pred CCeEEEECC-CchHHHHHHHHHhhC---cceeEEEeccc
Confidence 478999995 999999999999999 89999998764
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.46 E-value=0.3 Score=39.46 Aligned_cols=37 Identities=11% Similarity=0.161 Sum_probs=30.3
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.++.+|+|+|+ |.+|...+.-+...| ..+|++.++++
T Consensus 25 ~~gd~VlI~G~-G~iG~~~~~~a~~~G--~~~Vi~~d~~~ 61 (171)
T d1pl8a2 25 TLGHKVLVCGA-GPIGMVTLLVAKAMG--AAQVVVTDLSA 61 (171)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTT--CSEEEEEESCH
T ss_pred CCCCEEEEECC-CccHHHHHHHHHHcC--CceEEeccCCH
Confidence 35789999986 999999988887776 35899998874
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=90.39 E-value=0.31 Score=41.11 Aligned_cols=38 Identities=24% Similarity=0.331 Sum_probs=32.1
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
-+.+++|.|.| .|-||+.+++.|..-| .+|+..++...
T Consensus 40 el~gk~vgIiG-~G~IG~~va~~l~~fg---~~V~~~d~~~~ 77 (197)
T d1j4aa1 40 EVRDQVVGVVG-TGHIGQVFMQIMEGFG---AKVITYDIFRN 77 (197)
T ss_dssp CGGGSEEEEEC-CSHHHHHHHHHHHHTT---CEEEEECSSCC
T ss_pred cccCCeEEEec-ccccchhHHHhHhhhc---ccccccCcccc
Confidence 35689999998 6999999999998877 78888887643
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.36 E-value=0.11 Score=41.40 Aligned_cols=36 Identities=28% Similarity=0.366 Sum_probs=31.6
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcC
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRT 84 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~ 84 (366)
.+++++|||+|| |.+|..-++.|++.| .+|+++...
T Consensus 10 ~l~gkrvLViGg-G~va~~ka~~Ll~~G---A~VtVvap~ 45 (150)
T d1kyqa1 10 QLKDKRILLIGG-GEVGLTRLYKLMPTG---CKLTLVSPD 45 (150)
T ss_dssp CCTTCEEEEEEE-SHHHHHHHHHHGGGT---CEEEEEEEE
T ss_pred eeCCCEEEEECC-CHHHHHHHHHHHHCC---CEEEEEeCC
Confidence 367999999997 999999999999999 788888654
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=90.24 E-value=0.21 Score=37.97 Aligned_cols=36 Identities=17% Similarity=0.189 Sum_probs=31.6
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
.+++|+|.|| |++|..++..|.+.| .+|.++.|.+.
T Consensus 21 ~~~~vvVvGg-G~ig~E~A~~l~~~g---~~vt~i~~~~~ 56 (121)
T d1mo9a2 21 PGSTVVVVGG-SKTAVEYGCFFNATG---RRTVMLVRTEP 56 (121)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTT---CEEEEECSSCT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcc---hhheEeeccch
Confidence 3689999995 999999999999998 88999998754
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=90.17 E-value=0.5 Score=39.55 Aligned_cols=38 Identities=13% Similarity=0.111 Sum_probs=32.6
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
-+.+++|.|.| .|-||+.+++.|..-| .+|+..++...
T Consensus 46 eL~gktvgIiG-~G~IG~~va~~l~~fg---~~v~~~d~~~~ 83 (193)
T d1mx3a1 46 RIRGETLGIIG-LGRVGQAVALRAKAFG---FNVLFYDPYLS 83 (193)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHTTT---CEEEEECTTSC
T ss_pred eeeCceEEEec-cccccccceeeeeccc---cceeeccCccc
Confidence 35689999998 6999999999998887 78989888654
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=90.02 E-value=0.18 Score=41.03 Aligned_cols=38 Identities=18% Similarity=0.380 Sum_probs=31.2
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
||+|.|.|+||.||...+.-+.+. +.-.+|.+++-..+
T Consensus 1 MK~I~IlGsTGSIG~~tL~Vi~~~-~d~f~v~~Lsa~~N 38 (151)
T d1q0qa2 1 MKQLTILGSTGSIGCSTLDVVRHN-PEHFRVVALVAGKN 38 (151)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHC-TTTEEEEEEEESSC
T ss_pred CCeEEEEcCCcHHHHHHHHHHHhC-CCCcEEEEEEecCc
Confidence 578999999999999988888776 55578888887654
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=89.83 E-value=0.36 Score=40.14 Aligned_cols=38 Identities=13% Similarity=0.101 Sum_probs=32.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGS 87 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~ 87 (366)
+++++|.|.| .|-||..+++.|..-| .+|...+|....
T Consensus 42 l~~~~vgiiG-~G~IG~~va~~l~~fg---~~v~~~d~~~~~ 79 (188)
T d2naca1 42 LEAMHVGTVA-AGRIGLAVLRRLAPFD---VHLHYTDRHRLP 79 (188)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHGGGT---CEEEEECSSCCC
T ss_pred ccccceeecc-ccccchhhhhhhhccC---ceEEEEeecccc
Confidence 4689999998 6999999999998887 789999987543
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.77 E-value=0.16 Score=41.10 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=30.5
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
|++|.+.| .|.+|+.++++|+++| +.|.+.+|+.
T Consensus 1 M~kIg~IG-lG~MG~~iA~~L~~~g---~~v~~~d~~~ 34 (162)
T d3cuma2 1 MKQIAFIG-LGHMGAPMATNLLKAG---YLLNVFDLVQ 34 (162)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHTT---CEEEEECSSH
T ss_pred CCEEEEEE-EHHHHHHHHHHHHHCC---CeEEEEECch
Confidence 56899998 6999999999999999 7899999874
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.77 E-value=0.21 Score=38.70 Aligned_cols=35 Identities=26% Similarity=0.314 Sum_probs=31.4
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
.++++|.|| |++|..++..|.+.| .+|+++.|++.
T Consensus 22 pk~vvIvGg-G~iG~E~A~~l~~~G---~~Vtlv~~~~~ 56 (125)
T d3grsa2 22 PGRSVIVGA-GYIAVEMAGILSALG---SKTSLMIRHDK 56 (125)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTT---CEEEEECSSSS
T ss_pred CCEEEEEcC-CccHHHHHHHHhcCC---cEEEEEeeccc
Confidence 378999995 999999999999998 89999999764
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=89.60 E-value=0.16 Score=41.66 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=29.9
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
..++.+|+|.|+ |.+|...++.+...| ..+|+++++++
T Consensus 25 ~~~g~~VlI~Ga-G~vGl~~~q~ak~~G--a~~Vi~~d~~~ 62 (174)
T d1jqba2 25 IEMGSSVVVIGI-GAVGLMGIAGAKLRG--AGRIIGVGSRP 62 (174)
T ss_dssp CCTTCCEEEECC-SHHHHHHHHHHHTTT--CSCEEEECCCH
T ss_pred CCCCCEEEEEcC-Ccchhhhhhhhhccc--ccccccccchh
Confidence 345889999986 999998888887776 35788888864
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=89.56 E-value=0.22 Score=40.71 Aligned_cols=37 Identities=24% Similarity=0.298 Sum_probs=28.0
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
..+|.|.|++|-+|+.+++.+.+. ..+.-+.+++|..
T Consensus 4 ~ikI~i~Ga~GrMG~~i~~~i~~~-~~~~lv~~~~~~~ 40 (162)
T d1diha1 4 NIRVAIAGAGGRMGRQLIQAALAL-EGVQLGAALEREG 40 (162)
T ss_dssp BEEEEETTTTSHHHHHHHHHHHHS-TTEECCCEECCTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEeccc
Confidence 458999999999999999999887 3444444455543
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=89.56 E-value=0.23 Score=41.54 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=30.2
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.++|+|.|| |..|...+..|.++| .+|+++.|..
T Consensus 6 ~~kVvVIGa-GiaGl~~A~~L~~~G---~~V~vier~~ 39 (268)
T d1c0pa1 6 QKRVVVLGS-GVIGLSSALILARKG---YSVHILARDL 39 (268)
T ss_dssp SCEEEEECC-SHHHHHHHHHHHHTT---CEEEEEESSC
T ss_pred CCcEEEECc-cHHHHHHHHHHHHCC---CCEEEEeCCC
Confidence 358999995 999999999999999 7899999853
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=89.43 E-value=0.41 Score=38.86 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=29.1
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
..++.+|+|.|+ |.+|...+.-+...|. ..|++.++++
T Consensus 26 ~~~g~~VlI~G~-G~iG~~~~~~ak~~g~--~~v~~~~~~~ 63 (174)
T d1f8fa2 26 VTPASSFVTWGA-GAVGLSALLAAKVCGA--SIIIAVDIVE 63 (174)
T ss_dssp CCTTCEEEEESC-SHHHHHHHHHHHHHTC--SEEEEEESCH
T ss_pred CCCCCEEEEeCC-CHHHhhhhhccccccc--ceeeeeccHH
Confidence 345889999997 9999999988877762 5666666653
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=89.37 E-value=0.18 Score=40.84 Aligned_cols=38 Identities=26% Similarity=0.375 Sum_probs=31.2
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
+|+|.|.|+||.||.....-+.+. +.-.+|.+++-..+
T Consensus 2 pK~I~IlGsTGSIG~~tL~Vi~~~-~d~f~v~~lsa~~N 39 (150)
T d1r0ka2 2 PRTVTVLGATGSIGHSTLDLIERN-LDRYQVIALTANRN 39 (150)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHT-GGGEEEEEEEESSC
T ss_pred CcEEEEECCCcHHHHHHHHHHHcC-CCCcEEEEEEeCCC
Confidence 589999999999999988877776 55578888877654
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=89.08 E-value=0.24 Score=38.25 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=32.1
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGS 87 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~ 87 (366)
.++++|.|| |++|..++..|.+.| .+|+++.|++..
T Consensus 25 p~~~viiG~-G~iglE~A~~~~~~G---~~Vtvi~~~~~~ 60 (123)
T d1dxla2 25 PKKLVVIGA-GYIGLEMGSVWGRIG---SEVTVVEFASEI 60 (123)
T ss_dssp CSEEEESCC-SHHHHHHHHHHHHHT---CEEEEECSSSSS
T ss_pred CCeEEEEcc-chHHHHHHHHHHhcC---CeEEEEEEcccc
Confidence 478999995 999999999999999 899999997643
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=88.51 E-value=0.29 Score=38.01 Aligned_cols=35 Identities=14% Similarity=0.231 Sum_probs=31.4
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
.++++|.|| |+||..++..|.+.| .+|+++.+.+.
T Consensus 26 p~~vvIiGg-G~IG~E~A~~~~~~G---~~Vtive~~~~ 60 (125)
T d1ojta2 26 PGKLLIIGG-GIIGLEMGTVYSTLG---SRLDVVEMMDG 60 (125)
T ss_dssp CSEEEEESC-SHHHHHHHHHHHHHT---CEEEEECSSSS
T ss_pred CCeEEEECC-CHHHHHHHHHhhcCC---CEEEEEEeecc
Confidence 578999995 999999999999999 89999988764
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=88.43 E-value=0.64 Score=37.49 Aligned_cols=39 Identities=15% Similarity=0.095 Sum_probs=30.7
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGS 87 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~ 87 (366)
.++.+|+|.|+ |.+|...+..+...| ..+|+++++++..
T Consensus 27 k~GdtVlV~Ga-GG~G~~~~~~~~~~g--~~~Vi~~~~~~~k 65 (176)
T d2jhfa2 27 TQGSTCAVFGL-GGVGLSVIMGCKAAG--AARIIGVDINKDK 65 (176)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTT--CSEEEEECSCGGG
T ss_pred CCCCEEEEECC-CCcHHHHHHHHHHcC--CceEEeecCcHHH
Confidence 35789999998 558888888887775 3789999887653
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=88.39 E-value=0.26 Score=44.21 Aligned_cols=36 Identities=25% Similarity=0.459 Sum_probs=31.8
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
+.|+|+|.|| |+-|...+..|.+.| ++|+++.+++.
T Consensus 1 k~KKI~IIGa-G~sGL~aA~~L~k~G---~~V~viEk~~~ 36 (314)
T d2bi7a1 1 KSKKILIVGA-GFSGAVIGRQLAEKG---HQVHIIDQRDH 36 (314)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHTTT---CEEEEEESSSS
T ss_pred CCCEEEEECC-cHHHHHHHHHHHhCC---CCEEEEECCCC
Confidence 4689999995 999999999999998 89999998753
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=88.29 E-value=0.61 Score=39.09 Aligned_cols=38 Identities=21% Similarity=0.204 Sum_probs=32.2
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
.+.+++|.|.| .|-||+.+++.|..-| -+|++.++...
T Consensus 42 ~l~~ktvgIiG-~G~IG~~va~~l~~fg---~~v~~~d~~~~ 79 (199)
T d1dxya1 42 ELGQQTVGVMG-TGHIGQVAIKLFKGFG---AKVIAYDPYPM 79 (199)
T ss_dssp CGGGSEEEEEC-CSHHHHHHHHHHHHTT---CEEEEECSSCC
T ss_pred cccceeeeeee-cccccccccccccccc---eeeeccCCccc
Confidence 34579999998 6999999999998887 78999988653
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=87.98 E-value=1.2 Score=35.52 Aligned_cols=38 Identities=13% Similarity=0.049 Sum_probs=29.1
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
.++.+|+|.|+ |.+|...+..+...| ..+|++.++++.
T Consensus 27 ~~G~tVlI~Ga-GGvG~~aiq~ak~~G--~~~vi~~~~~~~ 64 (176)
T d2fzwa2 27 EPGSVCAVFGL-GGVGLAVIMGCKVAG--ASRIIGVDINKD 64 (176)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHT--CSEEEEECSCGG
T ss_pred CCCCEEEEecc-hhHHHHHHHHHHHHh--cCceEEEcccHH
Confidence 35889999997 568999888888886 367777777644
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=87.96 E-value=0.56 Score=39.13 Aligned_cols=39 Identities=23% Similarity=0.219 Sum_probs=32.3
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
..++++++.|.| .|-||+.+++.+..-| .+|+..++...
T Consensus 43 ~~l~g~tvgIiG-~G~IG~~va~~l~~fg---~~v~~~d~~~~ 81 (191)
T d1gdha1 43 EKLDNKTLGIYG-FGSIGQALAKRAQGFD---MDIDYFDTHRA 81 (191)
T ss_dssp CCCTTCEEEEEC-CSHHHHHHHHHHHTTT---CEEEEECSSCC
T ss_pred ceecccceEEee-cccchHHHHHHHHhhc---ccccccccccc
Confidence 345689999998 5999999999998887 78888887654
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=87.92 E-value=1.3 Score=34.38 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=31.3
Q ss_pred cccCCCCeEEEeCCc---chHHHHHHHHHHHhCCCccEEEEEEcC
Q psy17528 43 QEFYKDQTIFITGAT---GFLGSLLVEKLLRCCPQIRKIILLIRT 84 (366)
Q Consensus 43 ~~~~~~~~ilItGat---G~IG~~lv~~Ll~~g~~~~~V~~~~R~ 84 (366)
..+++.++|.|.||+ |..|..+++.|++.| -.+|+.+..+
T Consensus 3 ~~lf~PksIAVVGaS~~~~~~g~~v~~~L~~~~--~g~v~pVnP~ 45 (129)
T d2csua1 3 DYFFNPKGIAVIGASNDPKKLGYEVFKNLKEYK--KGKVYPVNIK 45 (129)
T ss_dssp CTTTSCSEEEEETCCSCTTSHHHHHHHHHTTCC--SSEEEEECSS
T ss_pred hHhCCCCeEEEEccCCCCCCcHHHHHHHHHHcC--CCcEEEeccC
Confidence 346788999999998 899999999987653 2577777554
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=87.87 E-value=0.27 Score=41.21 Aligned_cols=34 Identities=18% Similarity=0.172 Sum_probs=30.3
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
+|+|+|+|| |.-|...+..|.+.| .+|+++.+++
T Consensus 1 ~KkV~IIGa-G~aGL~aA~~La~~G---~~V~vlE~~~ 34 (373)
T d1seza1 1 AKRVAVIGA-GVSGLAAAYKLKIHG---LNVTVFEAEG 34 (373)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHTTS---CEEEEECSSS
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCC---CCEEEEeCCC
Confidence 589999995 999999999999998 7999998764
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=87.76 E-value=0.22 Score=42.64 Aligned_cols=31 Identities=19% Similarity=0.320 Sum_probs=28.5
Q ss_pred EEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 51 IFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 51 ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
|+|+|| |.+|..++.+|.++| .+|+++.+..
T Consensus 7 vvIIGa-Gi~Gls~A~~La~~G---~~V~vlE~~~ 37 (276)
T d1ryia1 7 AVVIGG-GIIGSAIAYYLAKEN---KNTALFESGT 37 (276)
T ss_dssp EEEECC-SHHHHHHHHHHHHTT---CCEEEECSSS
T ss_pred EEEECc-CHHHHHHHHHHHHCC---CcEEEEeCCC
Confidence 999995 999999999999999 8999999864
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.72 E-value=0.58 Score=38.41 Aligned_cols=34 Identities=26% Similarity=0.267 Sum_probs=26.7
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcC
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRT 84 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~ 84 (366)
.+|||+||+|-+|+..++-....| ...|+..+++
T Consensus 32 etVLI~gaaGgVG~~aiQlak~~G--a~~vi~~~~~ 65 (187)
T d1vj1a2 32 QTMVVSGAAGACGSLAGQIGHLLG--CSRVVGICGT 65 (187)
T ss_dssp CEEEESSTTSTTGGGHHHHHHHTT--CSEEEEEESS
T ss_pred CEEEEECCCchhhHHHHHHHHHcC--Ccceecccch
Confidence 789999999999999998887776 3455555554
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=87.70 E-value=1.2 Score=36.26 Aligned_cols=39 Identities=15% Similarity=0.068 Sum_probs=31.5
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
..++.+|+|+|+ |.||...+..+...| ..+|++.++++.
T Consensus 26 v~~G~~VlV~G~-G~iGl~a~~~ak~~G--a~~Vi~~d~~~~ 64 (174)
T d1e3ia2 26 VTPGSTCAVFGL-GCVGLSAIIGCKIAG--ASRIIAIDINGE 64 (174)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTT--CSEEEEECSCGG
T ss_pred CCCCCEEEEECC-ChHHHHHHHHHHHhC--CceeeeeccchH
Confidence 345789999985 999999999988886 367888888754
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.67 E-value=0.24 Score=41.49 Aligned_cols=32 Identities=22% Similarity=0.254 Sum_probs=29.0
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcC
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRT 84 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~ 84 (366)
|+|.|.| .||+|..++..|.+.| ++|++++.+
T Consensus 1 MkI~ViG-lG~vGl~~a~~la~~g---~~V~g~D~n 32 (202)
T d1mv8a2 1 MRISIFG-LGYVGAVCAGCLSARG---HEVIGVDVS 32 (202)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTT---CEEEEECSC
T ss_pred CEEEEEC-CCHhHHHHHHHHHhCC---CcEEEEeCC
Confidence 5799997 6999999999999999 889999876
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=87.27 E-value=0.27 Score=39.75 Aligned_cols=36 Identities=19% Similarity=0.113 Sum_probs=30.5
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
+++|+|.|| |..|...+..|.+.|. ..|+++.|++.
T Consensus 4 ~~kVaIIGa-GpaGl~aA~~l~~~G~--~~V~v~E~~~~ 39 (196)
T d1gtea4 4 SAKIALLGA-GPASISCASFLARLGY--SDITIFEKQEY 39 (196)
T ss_dssp GCCEEEECC-SHHHHHHHHHHHHTTC--CCEEEEESSSS
T ss_pred CCEEEEECC-hHHHHHHHHHHHHCCC--CeEEEEEecCc
Confidence 579999995 9999999999999982 24888898764
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=87.16 E-value=0.28 Score=39.42 Aligned_cols=33 Identities=18% Similarity=0.354 Sum_probs=29.7
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
|+|.|.| .|.+|+.++++|++.| +.|++.+|++
T Consensus 1 MkIgiIG-lG~MG~~~A~~L~~~G---~~V~~~d~~~ 33 (161)
T d1vpda2 1 MKVGFIG-LGIMGKPMSKNLLKAG---YSLVVSDRNP 33 (161)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTT---CEEEEECSCH
T ss_pred CEEEEEe-hhHHHHHHHHHHHHCC---CeEEEEeCCc
Confidence 5799998 6999999999999999 8899999874
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=87.10 E-value=2.5 Score=34.19 Aligned_cols=38 Identities=24% Similarity=0.093 Sum_probs=25.7
Q ss_pred CCeEEEeCCcchHHHH--HHHHHHHhC-CCccEEEEEEcCCC
Q psy17528 48 DQTIFITGATGFLGSL--LVEKLLRCC-PQIRKIILLIRTRG 86 (366)
Q Consensus 48 ~~~ilItGatG~IG~~--lv~~Ll~~g-~~~~~V~~~~R~~~ 86 (366)
.+||.|.|| |.+|+. ++..|+... .....|.+++.++.
T Consensus 2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~ 42 (171)
T d1obba1 2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEE 42 (171)
T ss_dssp CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHH
T ss_pred CcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCch
Confidence 468999996 888865 445555431 12358999999753
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=86.91 E-value=0.67 Score=38.03 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=30.0
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEc
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIR 83 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R 83 (366)
+++|+|+|.|-+..+|.-++.-|.+.| .+|+....
T Consensus 35 l~GK~v~VIGrS~~VG~Pla~lL~~~g---atVt~~h~ 69 (166)
T d1b0aa1 35 TFGLNAVVIGASNIVGRPMSMELLLAG---CTTTVTHR 69 (166)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHTTT---CEEEEECS
T ss_pred cccceEEEEeccccccHHHHHHHHHhh---cccccccc
Confidence 569999999999999999999999987 67766544
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=86.79 E-value=0.45 Score=38.96 Aligned_cols=35 Identities=23% Similarity=0.307 Sum_probs=29.5
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
|||+|.|| |++|..++..|.+.++. .+|+++.|.+
T Consensus 1 ~KVvIIGg-G~~G~e~A~~l~~~~~~-~~V~v~~~~~ 35 (198)
T d1nhpa1 1 MKVIVLGS-SHGGYEAVEELLNLHPD-AEIQWYEKGD 35 (198)
T ss_dssp CEEEEECS-SHHHHHHHHHHHHHCTT-SEEEEEESSS
T ss_pred CEEEEECC-cHHHHHHHHHHHhcCCC-CeEEEEeCCC
Confidence 57999995 99999999999998644 5788888865
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=86.25 E-value=0.3 Score=39.78 Aligned_cols=36 Identities=17% Similarity=0.345 Sum_probs=30.9
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
++++|+|.|+ |..+.+++..|.+.| +.+|.++.|+.
T Consensus 16 ~~~~vlIlGa-GGaarai~~aL~~~g--~~~I~I~nR~~ 51 (167)
T d1npya1 16 KNAKVIVHGS-GGMAKAVVAAFKNSG--FEKLKIYARNV 51 (167)
T ss_dssp TTSCEEEECS-STTHHHHHHHHHHTT--CCCEEEECSCH
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCC--CCEEEEecccH
Confidence 4789999996 888999999999986 46899999975
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.97 E-value=1.1 Score=36.83 Aligned_cols=36 Identities=11% Similarity=0.171 Sum_probs=31.4
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRT 84 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~ 84 (366)
+++++|.|.|.+..+|.-++.-|+++| .+|+.....
T Consensus 37 l~Gk~vvVIGrS~iVGrPLa~lL~~~g---atVt~~~~~ 72 (170)
T d1a4ia1 37 IAGRHAVVVGRSKIVGAPMHDLLLWNN---ATVTTCHSK 72 (170)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTT---CEEEEECTT
T ss_pred cccceEEEEecCCccchHHHHHHHhcc---CceEEEecc
Confidence 579999999999999999999999998 777766554
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=85.96 E-value=0.48 Score=40.52 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=31.6
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.+.++|+|+|| |..|...+..|.+.| .+|+++.+.+
T Consensus 28 ~~pkkV~IIGa-G~aGLsaA~~L~~~G---~~V~vlE~~~ 63 (370)
T d2iida1 28 SNPKHVVIVGA-GMAGLSAAYVLAGAG---HQVTVLEASE 63 (370)
T ss_dssp SSCCEEEEECC-BHHHHHHHHHHHHHT---CEEEEECSSS
T ss_pred CCCCeEEEECC-CHHHHHHHHHHHHCC---CCEEEEeCCC
Confidence 34689999995 999999999999999 8999998864
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=85.57 E-value=0.7 Score=38.16 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=35.1
Q ss_pred cccccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 41 PIQEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 41 ~~~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
+.....+.++|+|.|| |..|...+..|.++| ++|+++.+.+.
T Consensus 36 ~~~~~~~~k~V~IIGa-GPAGL~AA~~la~~G---~~Vtl~E~~~~ 77 (179)
T d1ps9a3 36 PILPAVQKKNLAVVGA-GPAGLAFAINAAARG---HQVTLFDAHSE 77 (179)
T ss_dssp CCCSCSSCCEEEEECC-SHHHHHHHHHHHTTT---CEEEEEESSSS
T ss_pred ccCCCCCCcEEEEECc-cHHHHHHHHHHHhhc---cceEEEeccCc
Confidence 3344455799999995 999999999999999 89999999753
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=85.08 E-value=0.34 Score=39.43 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=29.9
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
|+|.|.| .|-+|+.++++|++.| +.|.+.+|+++
T Consensus 2 MkIGvIG-lG~MG~~ma~~L~~~G---~~V~~~dr~~~ 35 (178)
T d1pgja2 2 MDVGVVG-LGVMGANLALNIAEKG---FKVAVFNRTYS 35 (178)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTT---CCEEEECSSHH
T ss_pred CEEEEEe-ehHHHHHHHHHHHHCC---CeEEEEECCHH
Confidence 5799998 7999999999999999 78889998753
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=85.04 E-value=2.4 Score=34.34 Aligned_cols=38 Identities=29% Similarity=0.272 Sum_probs=24.1
Q ss_pred CCeEEEeCCcchHHH-HHHHHHHHhCC--CccEEEEEEcCCC
Q psy17528 48 DQTIFITGATGFLGS-LLVEKLLRCCP--QIRKIILLIRTRG 86 (366)
Q Consensus 48 ~~~ilItGatG~IG~-~lv~~Ll~~g~--~~~~V~~~~R~~~ 86 (366)
..||.|.|| |.+|. .++..|+..-. .+..|.+++.+++
T Consensus 3 ~~KI~iIGa-Gsv~~~~~~~~ll~~~~~l~~~eivL~Did~~ 43 (167)
T d1u8xx1 3 SFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKE 43 (167)
T ss_dssp CEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHH
T ss_pred CceEEEECC-ChhhhHHHHHHHHhhhhhcCCCEEEEEcCChh
Confidence 457999998 54554 35555555422 2358999998754
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=84.97 E-value=5.4 Score=28.94 Aligned_cols=37 Identities=30% Similarity=0.212 Sum_probs=29.5
Q ss_pred CCCCeEEEeCCcchHH-HHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 46 YKDQTIFITGATGFLG-SLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 46 ~~~~~ilItGatG~IG-~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
.+.++|.+.|..| +| +.|++.|.+.| +.|...++..+
T Consensus 6 ~~~~~ihfiGigG-~GMs~LA~~L~~~G---~~VsGSD~~~~ 43 (96)
T d1p3da1 6 RRVQQIHFIGIGG-AGMSGIAEILLNEG---YQISGSDIADG 43 (96)
T ss_dssp TTCCEEEEETTTS-TTHHHHHHHHHHHT---CEEEEEESCCS
T ss_pred hhCCEEEEEEECH-HHHHHHHHHHHhCC---CEEEEEeCCCC
Confidence 4578999998644 45 77899999999 89999998754
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=84.79 E-value=0.55 Score=37.19 Aligned_cols=34 Identities=15% Similarity=0.293 Sum_probs=29.5
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
|+|.+.|+ |-+|+++++.|++.|+ ++|++.+|++
T Consensus 1 MkI~fIG~-G~MG~ai~~~l~~~~~--~~i~v~~r~~ 34 (152)
T d1yqga2 1 MNVYFLGG-GNMAAAVAGGLVKQGG--YRIYIANRGA 34 (152)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCS--CEEEEECSSH
T ss_pred CEEEEEcC-cHHHHHHHHHHHHCCC--CcEEEEeCCh
Confidence 57999985 9999999999999973 7899998874
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=84.45 E-value=0.51 Score=37.33 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=28.9
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
|+|.|.| .|.+|+.+++.|++.| +.|+..++..+
T Consensus 1 MkIgiIG-~G~mG~~ia~~l~~~g---~~v~~~~~~~~ 34 (152)
T d1i36a2 1 LRVGFIG-FGEVAQTLASRLRSRG---VEVVTSLEGRS 34 (152)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTT---CEEEECCTTCC
T ss_pred CEEEEEc-HHHHHHHHHHHHHHCC---CeEEEEcCchh
Confidence 5799997 6999999999999998 77877777654
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=84.34 E-value=0.54 Score=39.55 Aligned_cols=35 Identities=14% Similarity=0.107 Sum_probs=30.8
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
.++|+|.|| |..|..++..|.+.| .+|+++.|++.
T Consensus 4 ~~kV~IiGa-G~aGl~~A~~L~~~G---~~v~v~Er~~~ 38 (265)
T d2voua1 4 TDRIAVVGG-SISGLTAALMLRDAG---VDVDVYERSPQ 38 (265)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTT---CEEEEECSSSS
T ss_pred CCcEEEECc-CHHHHHHHHHHHHCC---CCEEEEeCCCC
Confidence 468999996 999999999999998 89999998653
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.53 E-value=1.9 Score=35.32 Aligned_cols=38 Identities=13% Similarity=0.161 Sum_probs=31.8
Q ss_pred cCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 45 FYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 45 ~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
...++++.|.| .|-||+.+++.+..-| .+|+..++...
T Consensus 41 ~l~~k~vgiiG-~G~IG~~va~~~~~fg---~~v~~~d~~~~ 78 (184)
T d1ygya1 41 EIFGKTVGVVG-LGRIGQLVAQRIAAFG---AYVVAYDPYVS 78 (184)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHTTT---CEEEEECTTSC
T ss_pred cccceeeeecc-ccchhHHHHHHhhhcc---ceEEeecCCCC
Confidence 34689999998 6999999999998877 78988888654
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=83.31 E-value=0.86 Score=36.21 Aligned_cols=36 Identities=19% Similarity=0.125 Sum_probs=29.7
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.++.+|+|.|+ |.+|...+.-+...| .+|+++++++
T Consensus 26 ~~g~~VlV~Ga-G~vG~~~~~~ak~~G---~~Vi~~~~~~ 61 (166)
T d1llua2 26 RPGQWVAISGI-GGLGHVAVQYARAMG---LHVAAIDIDD 61 (166)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTT---CEEEEEESCH
T ss_pred CCCCEEEEeec-cccHHHHHHHHHHcC---Cccceecchh
Confidence 35789999986 999999888777776 7899998874
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=83.29 E-value=0.69 Score=38.16 Aligned_cols=35 Identities=11% Similarity=0.185 Sum_probs=28.4
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCc---cEEEEEEcC
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQI---RKIILLIRT 84 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~---~~V~~~~R~ 84 (366)
|+|+|.|| |.+|...+.+|.++|+.+ .++.++.+.
T Consensus 1 mkV~VIGa-Gi~GlstA~~L~~~G~~v~v~e~~~i~~~~ 38 (246)
T d1kifa1 1 MRVVVIGA-GVIGLSTALCIHERYHSVLQPLDVKVYADR 38 (246)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHHTTTSSSCEEEEEESC
T ss_pred CEEEEECc-hHHHHHHHHHHHHCCCCceEEeeeeecccC
Confidence 57999995 999999999999998654 366666653
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=83.17 E-value=1.1 Score=36.59 Aligned_cols=38 Identities=24% Similarity=0.217 Sum_probs=31.2
Q ss_pred CCCeEEE-eCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCC
Q psy17528 47 KDQTIFI-TGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGS 87 (366)
Q Consensus 47 ~~~~ilI-tGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~ 87 (366)
++.+|+| +||+|.+|...++-....| .+|++++|+.+.
T Consensus 28 ~g~~vli~~ga~g~vG~~aiqlAk~~G---a~vI~~v~~~~~ 66 (189)
T d1gu7a2 28 PGKDWFIQNGGTSAVGKYASQIGKLLN---FNSISVIRDRPN 66 (189)
T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHHT---CEEEEEECCCTT
T ss_pred CCCEEEEEeCCCchHHHHHHHHHhhcC---CeEEEEEecccc
Confidence 4667777 6999999999998888888 789999987653
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=83.00 E-value=1.3 Score=35.42 Aligned_cols=36 Identities=28% Similarity=0.330 Sum_probs=28.1
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
++.+|+|.|+ |.+|...+..+...|. ..|++.++++
T Consensus 32 ~g~~vli~Ga-G~vG~~~~~~a~~~g~--~~vv~~~~~~ 67 (172)
T d1h2ba2 32 PGAYVAIVGV-GGLGHIAVQLLKVMTP--ATVIALDVKE 67 (172)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHCC--CEEEEEESSH
T ss_pred CCCEEEEeCC-ChHHHHHHHHHHhhcC--cccccccchh
Confidence 4789999986 9999998888877762 5677777764
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=82.80 E-value=3.8 Score=29.55 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=26.8
Q ss_pred CeEEEeCCcchHH-HHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 49 QTIFITGATGFLG-SLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 49 ~~ilItGatG~IG-~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
++|.++|-.| +| +.|++.|++.| +.|...++..+
T Consensus 2 ~~ihfiGIgG-~GMs~LA~~L~~~G---~~VsGSD~~~~ 36 (89)
T d1j6ua1 2 MKIHFVGIGG-IGMSAVALHEFSNG---NDVYGSNIEET 36 (89)
T ss_dssp CEEEEETTTS-HHHHHHHHHHHHTT---CEEEEECSSCC
T ss_pred cEEEEEeECH-HHHHHHHHHHHhCC---CeEEEEeCCCC
Confidence 5788888644 55 57899999999 89999998754
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.70 E-value=6.3 Score=31.48 Aligned_cols=55 Identities=4% Similarity=-0.067 Sum_probs=34.6
Q ss_pred HHHHHhCcCEEEEcCcccChhhhH-HH--------------------HHHHHHHHHHHHHHHHHhcCCCcEEEEeeC
Q psy17528 167 EELLISQTTIIFHIAATVRFDEHI-RT--------------------AYNINVKGTQTILALAKRMKGLKSFVHVST 222 (366)
Q Consensus 167 ~~~~~~~~d~Vih~a~~~~~~~~~-~~--------------------~~~~nv~~~~~ll~~a~~~~~~~~~v~iSS 222 (366)
..+.++++|+||.+++....+... .+ ...-|+...+.+++.+.+. ....++.+-|
T Consensus 71 ~~~al~gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~-~pda~~i~vt 146 (169)
T d1s6ya1 71 RRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEEL-CPDAWLINFT 146 (169)
T ss_dssp HHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECS
T ss_pred chhhcCCCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhc-CCCeEEEEeC
Confidence 456778999999999976432111 11 1234777788888888876 4444444433
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| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=82.69 E-value=0.56 Score=38.09 Aligned_cols=35 Identities=17% Similarity=0.184 Sum_probs=30.9
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
..+|.+.| .|.+|+.++++|++.| +.|++.+|+++
T Consensus 2 ~~nIg~IG-lG~MG~~mA~~L~~~G---~~V~v~dr~~~ 36 (176)
T d2pgda2 2 QADIALIG-LAVMGQNLILNMNDHG---FVVCAFNRTVS 36 (176)
T ss_dssp CBSEEEEC-CSHHHHHHHHHHHHTT---CCEEEECSSTH
T ss_pred CCcEEEEe-EhHHHHHHHHHHHHCC---CeEEEEcCCHH
Confidence 45799998 5999999999999999 78899999864
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=82.69 E-value=0.5 Score=39.45 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=29.2
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
|+|+|+|| |.-|...+..|.+.| .+|+++-+++
T Consensus 1 m~V~IIGa-G~aGL~aA~~L~~~G---~~V~vlE~~~ 33 (347)
T d2ivda1 1 MNVAVVGG-GISGLAVAHHLRSRG---TDAVLLESSA 33 (347)
T ss_dssp CCEEEECC-BHHHHHHHHHHHTTT---CCEEEECSSS
T ss_pred CeEEEECC-CHHHHHHHHHHHhCC---CCEEEEecCC
Confidence 57999996 999999999999998 7899998764
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| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=82.61 E-value=1.1 Score=33.66 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=30.8
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRGS 87 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~~ 87 (366)
.++++|.|| |++|..++..|.+.|..-..|+++.|.+.-
T Consensus 20 p~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~~~i 58 (117)
T d1aoga2 20 PRRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRGEMI 58 (117)
T ss_dssp CSEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESSSSS
T ss_pred CCeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEeccchh
Confidence 478999996 999999998887765333679999987643
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=82.14 E-value=0.57 Score=37.27 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=28.9
Q ss_pred CeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 49 QTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 49 ~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
|+|.+.| +|-+|+++++.|++.| ++|++..|+.
T Consensus 1 MkIg~IG-~G~mG~al~~~l~~~~---~~i~v~~r~~ 33 (152)
T d2ahra2 1 MKIGIIG-VGKMASAIIKGLKQTP---HELIISGSSL 33 (152)
T ss_dssp CEEEEEC-CSHHHHHHHHHHTTSS---CEEEEECSSH
T ss_pred CEEEEEe-ccHHHHHHHHHHHhCC---CeEEEEcChH
Confidence 5789997 6999999999999987 7888888874
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| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=81.61 E-value=1 Score=37.89 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=33.0
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
.....++|+|.|| |+.|...+..|.+.| ..|+++.+...
T Consensus 45 ~~~~~k~VvIIGa-GpAGl~aA~~l~~~G---~~v~l~E~~~~ 83 (233)
T d1djqa3 45 QTKNKDSVLIVGA-GPSGSEAARVLMESG---YTVHLTDTAEK 83 (233)
T ss_dssp CCSSCCEEEEECC-SHHHHHHHHHHHHTT---CEEEEECSSSS
T ss_pred cccCCceEEEEcc-cHHHHHHHHHHHHhc---cceeeEeeccc
Confidence 3345789999995 999999999999998 78999988653
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| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.17 E-value=0.83 Score=44.11 Aligned_cols=40 Identities=15% Similarity=0.206 Sum_probs=32.6
Q ss_pred cccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 43 QEFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 43 ~~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
++.+...+|+|.|+ |.+|+++++.|...| +.++++++...
T Consensus 20 Q~~L~~s~VlvvG~-gglG~Ei~knLvl~G--Vg~itivD~d~ 59 (529)
T d1yova1 20 QEALESAHVCLINA-TATGTEILKNLVLPG--IGSFTIIDGNQ 59 (529)
T ss_dssp HHHHHHCEEEECCC-SHHHHHHHHHHHTTT--CSEEEEECCSB
T ss_pred HHHHhCCCEEEECC-CHHHHHHHHHHHHhc--CCEEEEEcCCc
Confidence 34455689999997 679999999999886 68999987754
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| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=81.08 E-value=1.7 Score=35.49 Aligned_cols=36 Identities=14% Similarity=0.199 Sum_probs=31.9
Q ss_pred CCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 46 YKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 46 ~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
.+..+|+|.|+ |-.|..-++...+.| ..|.+++++.
T Consensus 30 v~pa~V~ViGa-GvaG~~A~~~A~~lG---A~V~~~D~~~ 65 (168)
T d1pjca1 30 VKPGKVVILGG-GVVGTEAAKMAVGLG---AQVQIFDINV 65 (168)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTT---CEEEEEESCH
T ss_pred CCCcEEEEECC-ChHHHHHHHHHhhCC---CEEEEEeCcH
Confidence 45689999995 999999999999999 8999999974
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=81.04 E-value=0.77 Score=36.48 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=23.2
Q ss_pred CCCeEEEeCCcchHHHHHHHHHHHhCCC
Q psy17528 47 KDQTIFITGATGFLGSLLVEKLLRCCPQ 74 (366)
Q Consensus 47 ~~~~ilItGatG~IG~~lv~~Ll~~g~~ 74 (366)
+.++|+|.|| |++|..++..|.+.|.+
T Consensus 2 ~~~~VvIIGg-G~~G~e~A~~l~~~g~~ 28 (185)
T d1q1ra1 2 ANDNVVIVGT-GLAGVEVAFGLRASGWE 28 (185)
T ss_dssp CSCEEEEECC-SHHHHHHHHHHHHTTCC
T ss_pred CCCCEEEECC-cHHHHHHHHHHHHcCCc
Confidence 3578999995 99999999999999844
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.00 E-value=0.68 Score=37.24 Aligned_cols=31 Identities=19% Similarity=0.319 Sum_probs=28.3
Q ss_pred EEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCC
Q psy17528 51 IFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTR 85 (366)
Q Consensus 51 ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~ 85 (366)
|+|+| +|.-|...+..|.+.| ++|.++.+.+
T Consensus 8 viViG-aG~~Gl~~A~~La~~G---~~V~vlE~~~ 38 (297)
T d2bcgg1 8 VIVLG-TGITECILSGLLSVDG---KKVLHIDKQD 38 (297)
T ss_dssp EEEEC-CSHHHHHHHHHHHHTT---CCEEEECSSS
T ss_pred EEEEC-cCHHHHHHHHHHHHCC---CCEEEEcCCC
Confidence 89998 5999999999999999 8999999975
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=80.88 E-value=0.63 Score=34.74 Aligned_cols=39 Identities=18% Similarity=0.298 Sum_probs=30.7
Q ss_pred ccCCCCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 44 EFYKDQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 44 ~~~~~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
+.+++|+|+|.|+ |--|..++..|.+.+ ++++.+.|...
T Consensus 28 ~~f~gK~VlVVG~-g~Sa~dia~~l~~~a---k~v~~~~~r~~ 66 (107)
T d2gv8a2 28 ELFVGESVLVVGG-ASSANDLVRHLTPVA---KHPIYQSLLGG 66 (107)
T ss_dssp GGGTTCCEEEECS-SHHHHHHHHHHTTTS---CSSEEEECTTC
T ss_pred hhcCCCeEEEECC-CCCHHHHHHHHHHhc---CEEEEEEecCc
Confidence 4578999999994 899999999998876 66666666543
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=80.79 E-value=1.4 Score=32.92 Aligned_cols=38 Identities=11% Similarity=0.102 Sum_probs=29.4
Q ss_pred CCeEEEeCCcchHHHHHHHHHHHhCCCccEEEEEEcCCC
Q psy17528 48 DQTIFITGATGFLGSLLVEKLLRCCPQIRKIILLIRTRG 86 (366)
Q Consensus 48 ~~~ilItGatG~IG~~lv~~Ll~~g~~~~~V~~~~R~~~ 86 (366)
.++++|.|| |++|..++..|.+.+....+|+++.|.+.
T Consensus 18 p~~v~IiGg-G~ig~E~A~~l~~~~~~g~~Vtli~~~~~ 55 (117)
T d1feca2 18 PKRALCVGG-GYISIEFAGIFNAYKARGGQVDLAYRGDM 55 (117)
T ss_dssp CSEEEEECS-SHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred CCeEEEECC-ChHHHHHHHHhHhhcccccccceeccccc
Confidence 478999995 99999999877665322278999999764
|