Psyllid ID: psy17564


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
MPLLQSKQLYNSMDLSIRRELPTMLSKMAADHQLDELIMPSFTLLHGYRTKIQASDYVYAMLALLESPVRILCRMDDVELENIPEYNQIFEHQEKKPSDCFLDAAYCLA
cccHHHccccccccHHHHHHHHHHHHHHHHHccccccccccEEEEEcccccccHHHHHHHHHHHHccccHHHccccHHHHccccHHHHHHHHHccccHHHHHHHHHccc
ccHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccEEEcHHHHHcccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcHHHHHHHHHHcccccHHHHHHHHHHcc
mpllqskqlynsMDLSIRRELPTMLSKMAADhqldelimpsftllhgyrtkIQASDYVYAMLALLESPVRilcrmddvelenipeynqifehqekkpsdcfldaaycla
mpllqskqlynSMDLSIRRELPTMLSKMAADHQLDELIMPSFTLLHGYRTKIQASDYVYAMLALLESPVRILCRMDDVELENIPEYNQIfehqekkpsdcFLDAAYCLA
MPLLQSKQLYNSMDLSIRRELPTMLSKMAADHQLDELIMPSFTLLHGYRTKIQASDYVYAMLALLESPVRILCRMDDVELENIPEYNQIFEHQEKKPSDCFLDAAYCLA
****************************AADHQLDELIMPSFTLLHGYRTKIQASDYVYAMLALLESPVRILCRMDDVELENIPEYNQIFEHQEKKPSDCFLDAAYC**
MPLLQSKQLYNSMDLSIRRELPTMLSKMAADHQLDELIMPSFTLLHGYRTKIQASDYVYAMLALLESPVRI************************KPSDCFLDAAYCLA
MPLLQSKQLYNSMDLSIRRELPTMLSKMAADHQLDELIMPSFTLLHGYRTKIQASDYVYAMLALLESPVRILCRMDDVELENIPEYNQIFEHQEKKPSDCFLDAAYCLA
MPLLQSKQLYNSMDLSIRRELPTMLSKMAADHQLDELIMPSFTLLHGYRTKIQASDYVYAMLALLESPVRILCRMDDVELENIPEYNQIFEHQEKKPSDCFLDAAYCLA
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
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MPLLQSKQLYNSMDLSIRRELPTMLSKMAADHQLDELIMPSFTLLHGYRTKIQASDYVYAMLALLESPVRILCRMDDVELENIPEYNQIFEHQEKKPSDCFLDAAYCLA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query109 2.2.26 [Sep-21-2011]
Q9YHZ6 567 Cell division control pro N/A N/A 0.642 0.123 0.4 1e-08
Q9Z1X9 566 Cell division control pro yes N/A 0.623 0.120 0.352 5e-07
O75419 566 Cell division control pro yes N/A 0.623 0.120 0.338 8e-07
O74113 638 Cell division control pro yes N/A 0.605 0.103 0.363 3e-06
Q08032 650 Cell division control pro yes N/A 0.605 0.101 0.378 3e-05
Q55GA4 644 Cell division control pro yes N/A 0.614 0.104 0.388 6e-05
>sp|Q9YHZ6|CDC45_XENLA Cell division control protein 45 homolog OS=Xenopus laevis GN=cdc45 PE=1 SV=2 Back     alignment and function desciption
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 46/70 (65%)

Query: 1   MPLLQSKQLYNSMDLSIRRELPTMLSKMAADHQLDELIMPSFTLLHGYRTKIQASDYVYA 60
           MPL Q KQ +NSMD+S++  L  ML + A    + ++ + +F++  G++ K  ASD V+A
Sbjct: 321 MPLKQVKQKFNSMDISLKENLREMLEESANKFGMKDVRVQTFSVQFGFKNKFLASDIVFA 380

Query: 61  MLALLESPVR 70
           +L+LLE+  R
Sbjct: 381 VLSLLENTER 390




Required for initiation of chromosomal DNA replication. Binds to chromatin in a mutually dependent manner with the GINS DNA replication complex.
Xenopus laevis (taxid: 8355)
>sp|Q9Z1X9|CDC45_MOUSE Cell division control protein 45 homolog OS=Mus musculus GN=Cdc45 PE=2 SV=2 Back     alignment and function description
>sp|O75419|CDC45_HUMAN Cell division control protein 45 homolog OS=Homo sapiens GN=CDC45 PE=1 SV=1 Back     alignment and function description
>sp|O74113|CDC45_SCHPO Cell division control protein 45 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sna41 PE=1 SV=1 Back     alignment and function description
>sp|Q08032|CDC45_YEAST Cell division control protein 45 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC45 PE=1 SV=1 Back     alignment and function description
>sp|Q55GA4|CDC45_DICDI Cell division control protein 45 homolog OS=Dictyostelium discoideum GN=cdc45 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query109
380013773 563 PREDICTED: cell division control protein 0.788 0.152 0.431 9e-15
328789975 563 PREDICTED: cell division control protein 0.788 0.152 0.431 9e-15
383852312 566 PREDICTED: cell division control protein 0.788 0.151 0.422 2e-14
307205668 519 CDC45-related protein [Harpegnathos salt 0.788 0.165 0.385 5e-14
307170875 594 CDC45-related protein [Camponotus florid 0.788 0.144 0.394 7e-14
332025013 566 CDC45-related protein [Acromyrmex echina 0.788 0.151 0.385 1e-13
322787080 557 hypothetical protein SINV_16063 [Solenop 0.788 0.154 0.385 2e-13
340711130 563 PREDICTED: cell division control protein 0.788 0.152 0.403 2e-13
350405652 563 PREDICTED: cell division control protein 0.788 0.152 0.394 3e-13
195438782 571 GK16247 [Drosophila willistoni] gi|19416 0.752 0.143 0.361 7e-13
>gi|380013773|ref|XP_003690923.1| PREDICTED: cell division control protein 45 homolog [Apis florea] Back     alignment and taxonomy information
 Score = 84.3 bits (207), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 65/109 (59%), Gaps = 23/109 (21%)

Query: 1   MPLLQSKQLYNSMDLSIRRELPTMLSKMAADHQLDELIMPSFTLLHGYRTKIQASDYVYA 60
           +PL QSKQ +++MDL++R+EL  M+ K+A  ++LD +I  SFTL +GY+ K  ASD VYA
Sbjct: 318 LPLAQSKQRFSAMDLALRQELRQMVEKLAGKYKLDTVIGTSFTLQYGYKFKYCASDIVYA 377

Query: 61  MLALLESPVRILCRMDDVELENIPEYNQIFEHQEKKPSDCFLDAAYCLA 109
           MLAL+ES                         +EK P  CFLDA+ CL+
Sbjct: 378 MLALMESS-----------------------SKEKLPQRCFLDASDCLS 403




Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328789975|ref|XP_393560.4| PREDICTED: cell division control protein 45 homolog [Apis mellifera] Back     alignment and taxonomy information
>gi|383852312|ref|XP_003701672.1| PREDICTED: cell division control protein 45 homolog [Megachile rotundata] Back     alignment and taxonomy information
>gi|307205668|gb|EFN83930.1| CDC45-related protein [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|307170875|gb|EFN62986.1| CDC45-related protein [Camponotus floridanus] Back     alignment and taxonomy information
>gi|332025013|gb|EGI65200.1| CDC45-related protein [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|322787080|gb|EFZ13304.1| hypothetical protein SINV_16063 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|340711130|ref|XP_003394133.1| PREDICTED: cell division control protein 45 homolog [Bombus terrestris] Back     alignment and taxonomy information
>gi|350405652|ref|XP_003487506.1| PREDICTED: cell division control protein 45 homolog [Bombus impatiens] Back     alignment and taxonomy information
>gi|195438782|ref|XP_002067311.1| GK16247 [Drosophila willistoni] gi|194163396|gb|EDW78297.1| GK16247 [Drosophila willistoni] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query109
FB|FBgn0026143 575 CDC45L "CDC45L" [Drosophila me 0.614 0.116 0.402 5.3e-11
UNIPROTKB|Q9YHZ6 567 cdc45 "Cell division control p 0.642 0.123 0.4 5.4e-08
UNIPROTKB|K7GQV3269 CDC45 "Uncharacterized protein 0.623 0.252 0.367 7.4e-08
UNIPROTKB|K7GMQ5474 CDC45 "Uncharacterized protein 0.623 0.143 0.367 2.3e-07
UNIPROTKB|K7GSB7 567 CDC45 "Uncharacterized protein 0.623 0.119 0.367 3e-07
UNIPROTKB|F1RK60 598 CDC45 "Uncharacterized protein 0.623 0.113 0.367 3.3e-07
ZFIN|ZDB-GENE-040426-2710 572 cdc45 "CDC45 cell division cyc 0.614 0.117 0.328 6.2e-07
UNIPROTKB|E1BYS7 568 CDC45 "Uncharacterized protein 0.614 0.117 0.373 6.4e-07
UNIPROTKB|A4FV47 566 CDC45L "Uncharacterized protei 0.623 0.120 0.352 1e-06
MGI|MGI:1338073 566 Cdc45 "cell division cycle 45" 0.623 0.120 0.352 1e-06
FB|FBgn0026143 CDC45L "CDC45L" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 162 (62.1 bits), Expect = 5.3e-11, P = 5.3e-11
 Identities = 27/67 (40%), Positives = 51/67 (76%)

Query:     1 MPLLQSKQLYNSMDLSIRRELPTMLSKMAADHQLDELIMPSFTLLHGYRTKIQASDYVYA 60
             +PL+ ++Q Y +MDL +R+E  +M+ ++A  + + +++  +FTL +GYR++  A+DYVYA
Sbjct:   333 LPLVHARQTYGAMDLVLRKEFFSMVERLAEKYDIADIVYGTFTLSYGYRSRYAAADYVYA 392

Query:    61 MLALLES 67
             +LA++ES
Sbjct:   393 LLAIMES 399




GO:0005656 "pre-replicative complex" evidence=ISS;IPI
GO:0006260 "DNA replication" evidence=ISS;IPI
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=IDA
GO:0006277 "DNA amplification" evidence=IEP
GO:0006270 "DNA replication initiation" evidence=ISS
GO:0003682 "chromatin binding" evidence=IDA
GO:0005737 "cytoplasm" evidence=IDA
GO:0030261 "chromosome condensation" evidence=IMP
GO:0045750 "positive regulation of S phase of mitotic cell cycle" evidence=IMP
GO:0043138 "3'-5' DNA helicase activity" evidence=IDA
GO:0048812 "neuron projection morphogenesis" evidence=IMP
GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI;IMP
GO:0022008 "neurogenesis" evidence=IMP
UNIPROTKB|Q9YHZ6 cdc45 "Cell division control protein 45 homolog" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|K7GQV3 CDC45 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|K7GMQ5 CDC45 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|K7GSB7 CDC45 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1RK60 CDC45 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2710 cdc45 "CDC45 cell division cycle 45 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BYS7 CDC45 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|A4FV47 CDC45L "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1338073 Cdc45 "cell division cycle 45" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query109
pfam02724 583 pfam02724, CDC45, CDC45-like protein 3e-22
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein Back     alignment and domain information
 Score = 89.3 bits (222), Expect = 3e-22
 Identities = 39/104 (37%), Positives = 57/104 (54%), Gaps = 3/104 (2%)

Query: 1   MPLLQSKQLYNSMDLSIRRELPTMLSKMAADHQLDELIMPSFTLLHGYRTKIQASDYVYA 60
           +PL Q+KQ YN MD+ ++REL  +L K A  + LD+++  SF   +GYR K+ ASD V A
Sbjct: 320 IPLKQAKQKYNHMDMDLKRELRELLEKYAPKYGLDDIVFQSFVRTYGYRGKLSASDVVEA 379

Query: 61  MLALLESPVRILCRMDDVELENIPEYNQIFEHQEKKPSDCFLDA 104
           + ALLE   +      D E E+I       E +++     F  A
Sbjct: 380 VTALLEVGSKSPAGASDTEEEDIELLK---EKEDESWLSNFWRA 420


CDC45 is an essential gene required for initiation of DNA replication in S. cerevisiae, forming a complex with MCM5/CDC46. Homologues of CDC45 have been identified in human, mouse and smut fungus among others. Length = 583

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 109
PF02724 622 CDC45: CDC45-like protein; InterPro: IPR003874 CDC 99.97
KOG2475|consensus 587 99.94
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46 Back     alignment and domain information
Probab=99.97  E-value=1.3e-31  Score=230.24  Aligned_cols=109  Identities=35%  Similarity=0.437  Sum_probs=90.1

Q ss_pred             CchhhhhhchhcCCHHHHhHHHHHHHHHhhhCCCCCcccchhheeecCCCccchhhHHHHHHHHhccCcchh---ccccc
Q psy17564          1 MPLLQSKQLYNSMDLSIRRELPTMLSKMAADHQLDELIMPSFTLLHGYRTKIQASDYVYAMLALLESPVRIL---CRMDD   77 (109)
Q Consensus         1 isL~q~kQ~y~~Md~~lK~~L~~~le~~a~~ygL~dl~~~SF~r~~Gy~~~lSA~D~vyav~ALLE~~~~~~---~~~~~   77 (109)
                      |||+||||+|.|||+++|++|+++|+++||+|||++++|+||+|+|||+++|||+||||||+||||+++...   ...+.
T Consensus       348 isL~~~~Q~y~~Md~~~K~~L~~~l~~~a~~ygL~dl~~~sF~r~~Gy~~~lSA~D~v~al~ALLE~~~~~~~~~~~~~~  427 (622)
T PF02724_consen  348 ISLKQAQQKYSYMDMELKRELREKLEKYAPKYGLDDLVFPSFVRTYGYRGKLSASDVVYALTALLEVGKSSSNVNNASNP  427 (622)
T ss_pred             CcHHHHcCCchhCCHHHHHHHHHHHHHHHHhcCCCCceeeeEEEEecCCCceeHHHHHHHHHHHhcCCccccccccccCc
Confidence            799999999999999999999999999999999999999999999999999999999999999999985311   01111


Q ss_pred             ccc-cCccchhhhhhhccCChhhHHHHHhhhcC
Q psy17564         78 VEL-ENIPEYNQIFEHQEKKPSDCFLDAAYCLA  109 (109)
Q Consensus        78 ~~~-~~~~~~~~~~~~~~~~~~~~Fw~AyDaLs  109 (109)
                      ... ....+..+.....++.|.+|||.|||||+
T Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~nF~~A~DaL~  460 (622)
T PF02724_consen  428 ENDSDEEEDNEEDEEKEEESWVDNFWRAYDALS  460 (622)
T ss_pred             ccccccchhhhhhcccccccHHHHHHHHHHHhC
Confidence            111 12233344446667899999999999996



Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation

>KOG2475|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query109
d1wota_98 Unnamed putative nucleotidyltransferase {Thermus t 82.03
>d1wota_ d.218.1.5 (A:) Unnamed putative nucleotidyltransferase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Catalytic subunit of bi-partite nucleotidyltransferase
domain: Unnamed putative nucleotidyltransferase
species: Thermus thermophilus [TaxId: 274]
Probab=82.03  E-value=0.47  Score=29.35  Aligned_cols=34  Identities=21%  Similarity=0.183  Sum_probs=29.9

Q ss_pred             hcCCHHHHhHHHHHHHHHhhhCCCCCcc-cchhhe
Q psy17564         11 NSMDLSIRRELPTMLSKMAADHQLDELI-MPSFTL   44 (109)
Q Consensus        11 ~~Md~~lK~~L~~~le~~a~~ygL~dl~-~~SF~r   44 (109)
                      +||+++.-+..++.+...+.+||+..+. |+|+.|
T Consensus         2 ~~m~~e~l~~~~~~i~~i~~k~~v~~v~lFGS~ar   36 (98)
T d1wota_           2 SHMDLETLRARREAVLSLCARHGAVRVRVFGSVAR   36 (98)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHTCSSCEECSHHHH
T ss_pred             CcCCHHHHHHHHHHHHHHHHHcCCcEEEEECCccC
Confidence            5899999999999999999999999764 688765