Psyllid ID: psy17695

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220--
Protein Sequence
MMKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRLPSVHPHHSMLYPLTHEYRKAIAARHANLCLLKAMRAKVWQARTESPLFCVQRYAQRLESLYKVMWDRYSQNLPVTHITQAKIAREAEHFLDLSQVPCNGKAADRIHKDGIHILVNMNGYTKGARNEIFALRPAPIQSSFTA
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccEEEEEEEcccccccHHHHHHHHHHccccccccccccHHHHHHHHHcccEEEEEcccccccccHHHHHccccHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEcccccccccHHHHHHHHHHcHHHHEEEcccccccHHHHHHHHHcccEEcHHcccccHHHHHHHHHcccEEEEEcccccccccccEEEcccccEEEEEcc
Coil and Loop (DISEMBL)
mmktpffkvgilfsnssfpspgnipEAIQSYRTALklkpdfpdaycnLAHCLQIVCDWTDYEARMKKLVSIVAEQldknrlpsvhphhsmlyplTHEYRKAIAARHANLCLLKAMRAKVWQARTESPLFCVQRYAQRLESLYKVMWDrysqnlpvthITQAKIAREAEHFldlsqvpcngkaadrihKDGIHILVNmngytkgarneifalrpapiqssfta
Flexible Loop (DISEMBL)
MMKTPFFKVGILFsnssfpspgnIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRLPSVHPHHSMLYPLTHEYRKAIAARHANLCLLKAMRAKVWQARTESPLFCVQRYAQRLESLYKVMWDRYSQNLPVTHITQAKIAREAEHFLDLSQVPCNGKAADRIHKDGIHILVNMNGYTKGARNEIFalrpapiqssfta
Low Complexity Region (SEG)
MMKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRLPSVHPHHSMLYPLTHEYRKAIAARHANLCLLKAMRAKVWQARTESPLFCVQRYAQRLESLYKVMWDRYSQNLPVTHITQAKIAREAEHFLDLSQVPCNGKAADRIHKDGIHILVNMNGYTKGARNEIFALRPAPIQSSFTA
Disordered region (IsUnstruct)
*****FFKVGILFSN********IPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRLPSVHPHHSMLYPLTHEYRKAIAARHANLCLLKAMRAKVWQARTESPLFCVQRYAQRLESLYKVMWDRYSQNLPVTHITQAKIAREAEHFLDLSQVPCNGKAADRIHKDGIHILVNMNGYTKGARNEIFAL***********
Disordered Region (DISOPRED)
*MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRLPSVHPHHSMLYPLTHEYRKAIAARHANLCLLKAMRAKVWQARTESPLFCVQRYAQRLESLYKVMWDRYSQNLPVTHITQAKIAREAEHFLDLSQVPCNGKAADRIHKDGIHILVNMNGYTKGARNEIFALRPAPIQSSFTA
Disordered Region (DISEMBL)
MMKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRLPSVHPHHSMLYPLTHEYRKAIAARHANLCLLKAMRAKVWQARTESPLFCVQRYAQRLESLYKVMWDRYSQNLPVTHITQAKIAREAEHFLDLSQVPCNGKAADRIHKDGIHILVNMNGYTKGARNEIFALRPAPIQSSFTA
Disordered Region (DISPRO)
**KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRLPSVHPHHSMLYPLTHEYRKAIAARHANLCLLKAMRAKVWQARTESPLFCVQRYAQRLESLYKVMWDRYSQNLPVTHITQAKIAREAEHFLDLSQVPCNGKAADRIHKDGIHILVNMNGYTKGARNEIFALRPAPIQSSFTA
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRLPSVHPHHSMLYPLTHEYRKAIAARHANLCLLKAMRAKVWQARTESPLFCVQRYAQRLESLYKVMWDRYSQNLPVTHITQAKIAREAEHFLDLSQVPCNGKAADRIHKDGIHILVNMNGYTKGARNEIFALRPAPIQSSFTA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	222	2.2.26 [Sep-21-2011]
P56558	1036	UDP-N-acetylglucosamine--	yes	N/A	0.887	0.190	0.619	1e-70
Q8CGY8	1046	UDP-N-acetylglucosamine--	yes	N/A	0.887	0.188	0.619	1e-70
O15294	1046	UDP-N-acetylglucosamine--	yes	N/A	0.887	0.188	0.614	3e-70
Q27HV0	1046	UDP-N-acetylglucosamine--	yes	N/A	0.887	0.188	0.614	3e-70
P81436	1046	UDP-N-acetylglucosamine--	yes	N/A	0.887	0.188	0.614	3e-70
O18158	1151	UDP-N-acetylglucosamine--	yes	N/A	0.851	0.164	0.563	1e-63
Q9M8Y0	977	Probable UDP-N-acetylgluc	yes	N/A	0.900	0.204	0.344	1e-29

>sp|P56558|OGT1_RAT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Rattus norvegicus GN=Ogt PE=1 SV=1

 Score =  266 bits (679), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 135/218 (61%), Positives = 155/218 (71%), Gaps = 21/218 (9%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
           GNIPEAI SYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY+ RMKKLVSIVAEQL+KNRL
Sbjct: 433 GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAEQLEKNRL 492

Query: 82  PSVHPHHSMLYPLTHEYRKAIAARHANLCL------------------LKAMRAKVWQAR 123
           PSVHPHHSMLYPL+H +RKAIA RH NLCL                  L   R +V    
Sbjct: 493 PSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVS 552

Query: 124 TESPLFCVQRYAQRLESLYK-VMWDRYSQNLPVTHIT--QAKIAREAEHFLDLSQVPCNG 180
           ++          Q +  ++    ++ +   L     T  + K+  EA HF+DLSQ+PCNG
Sbjct: 553 SDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNG 612

Query: 181 KAADRIHKDGIHILVNMNGYTKGARNEIFALRPAPIQS 218
           KAADRIH+DGIHILVNMNGYTKGARNE+FALRPAPIQ+
Sbjct: 613 KAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQA 650

Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues.
Rattus norvegicus (taxid: 10116)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 2EC: 5EC: 5

>sp|Q8CGY8|OGT1_MOUSE UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Mus musculus GN=Ogt PE=1 SV=2

 Score =  266 bits (679), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 135/218 (61%), Positives = 155/218 (71%), Gaps = 21/218 (9%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
           GNIPEAI SYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY+ RMKKLVSIVAEQL+KNRL
Sbjct: 443 GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAEQLEKNRL 502

Query: 82  PSVHPHHSMLYPLTHEYRKAIAARHANLCL------------------LKAMRAKVWQAR 123
           PSVHPHHSMLYPL+H +RKAIA RH NLCL                  L   R +V    
Sbjct: 503 PSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVS 562

Query: 124 TESPLFCVQRYAQRLESLYK-VMWDRYSQNLPVTHIT--QAKIAREAEHFLDLSQVPCNG 180
           ++          Q +  ++    ++ +   L     T  + K+  EA HF+DLSQ+PCNG
Sbjct: 563 SDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNG 622

Query: 181 KAADRIHKDGIHILVNMNGYTKGARNEIFALRPAPIQS 218
           KAADRIH+DGIHILVNMNGYTKGARNE+FALRPAPIQ+
Sbjct: 623 KAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQA 660

Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 5

EC: 5

>sp|O15294|OGT1_HUMAN UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Homo sapiens GN=OGT PE=1 SV=3

 Score =  265 bits (676), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 134/218 (61%), Positives = 155/218 (71%), Gaps = 21/218 (9%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
           GNIPEAI SYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY+ RMKKLVSIVA+QL+KNRL
Sbjct: 443 GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRL 502

Query: 82  PSVHPHHSMLYPLTHEYRKAIAARHANLCL------------------LKAMRAKVWQAR 123
           PSVHPHHSMLYPL+H +RKAIA RH NLCL                  L   R +V    
Sbjct: 503 PSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVS 562

Query: 124 TESPLFCVQRYAQRLESLYK-VMWDRYSQNLPVTHIT--QAKIAREAEHFLDLSQVPCNG 180
           ++          Q +  ++    ++ +   L     T  + K+  EA HF+DLSQ+PCNG
Sbjct: 563 SDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNG 622

Query: 181 KAADRIHKDGIHILVNMNGYTKGARNEIFALRPAPIQS 218
           KAADRIH+DGIHILVNMNGYTKGARNE+FALRPAPIQ+
Sbjct: 623 KAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQA 660

Isoform 2, the mitochondrial isoform (mOGT), is cytotoxic and triggers apoptosis in several cell types including INS1, an insulinoma cell line.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 5

EC: 5

>sp|Q27HV0|OGT1_PIG UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Sus scrofa GN=OGT PE=2 SV=1

 Score =  265 bits (676), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 134/218 (61%), Positives = 155/218 (71%), Gaps = 21/218 (9%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
           GNIPEAI SYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY+ RMKKLVSIVA+QL+KNRL
Sbjct: 443 GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRL 502

Query: 82  PSVHPHHSMLYPLTHEYRKAIAARHANLCL------------------LKAMRAKVWQAR 123
           PSVHPHHSMLYPL+H +RKAIA RH NLCL                  L   R +V    
Sbjct: 503 PSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVS 562

Query: 124 TESPLFCVQRYAQRLESLYK-VMWDRYSQNLPVTHIT--QAKIAREAEHFLDLSQVPCNG 180
           ++          Q +  ++    ++ +   L     T  + K+  EA HF+DLSQ+PCNG
Sbjct: 563 SDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNG 622

Query: 181 KAADRIHKDGIHILVNMNGYTKGARNEIFALRPAPIQS 218
           KAADRIH+DGIHILVNMNGYTKGARNE+FALRPAPIQ+
Sbjct: 623 KAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQA 660

Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues.

Sus scrofa (taxid: 9823)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 5

EC: 5

>sp|P81436|OGT1_RABIT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Oryctolagus cuniculus GN=OGT PE=1 SV=2

 Score =  265 bits (676), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 134/218 (61%), Positives = 155/218 (71%), Gaps = 21/218 (9%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
           GNIPEAI SYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY+ RMKKLVSIVA+QL+KNRL
Sbjct: 443 GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRL 502

Query: 82  PSVHPHHSMLYPLTHEYRKAIAARHANLCL------------------LKAMRAKVWQAR 123
           PSVHPHHSMLYPL+H +RKAIA RH NLCL                  L   R +V    
Sbjct: 503 PSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVS 562

Query: 124 TESPLFCVQRYAQRLESLYK-VMWDRYSQNLPVTHIT--QAKIAREAEHFLDLSQVPCNG 180
           ++          Q +  ++    ++ +   L     T  + K+  EA HF+DLSQ+PCNG
Sbjct: 563 SDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNG 622

Query: 181 KAADRIHKDGIHILVNMNGYTKGARNEIFALRPAPIQS 218
           KAADRIH+DGIHILVNMNGYTKGARNE+FALRPAPIQ+
Sbjct: 623 KAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQA 660

Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues.

Oryctolagus cuniculus (taxid: 9986)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 5

EC: 5

>sp|O18158|OGT1_CAEEL UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase OS=Caenorhabditis elegans GN=ogt-1 PE=1 SV=2

 Score =  242 bits (618), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 128/227 (56%), Positives = 152/227 (66%), Gaps = 38/227 (16%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
           GN+ EAIQSY TALKLKPDFPDAYCNLAHC QI+CDW DY+ R++KLV IV +QL K RL
Sbjct: 547 GNMAEAIQSYSTALKLKPDFPDAYCNLAHCHQIICDWNDYDKRVRKLVQIVEDQLCKKRL 606

Query: 82  PSVHPHHSMLYPLTHEYRKAIAARHANLCLLKAMRAKVWQARTESPLFCVQRYA----QR 137
           PSVHPHHSMLYPL+H  R AIAA+HA+LC  K       Q   ++PL    R++    QR
Sbjct: 607 PSVHPHHSMLYPLSHAARIAIAAKHASLCFDKVH----VQMLGKTPLIHADRFSVQNGQR 662

Query: 138 LESLYKVMWDRYSQNLPVTHITQ---------------------------AKIAREAEHF 170
           L   Y V  D    N P +H+ Q                           +K+  E+EHF
Sbjct: 663 LRIGY-VSSD--FGNHPTSHLMQSIPGMHDRSRVEVFCYALSVNDGTNFRSKLMNESEHF 719

Query: 171 LDLSQVPCNGKAADRIHKDGIHILVNMNGYTKGARNEIFALRPAPIQ 217
           +DLSQ+PCNGKAA++I +DGIHIL+NMNGYTKGARNEIFALRPAPIQ
Sbjct: 720 VDLSQIPCNGKAAEKIAQDGIHILINMNGYTKGARNEIFALRPAPIQ 766

Addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q9M8Y0|SEC_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC OS=Arabidopsis thaliana GN=SEC PE=2 SV=1

 Score =  129 bits (324), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/238 (34%), Positives = 121/238 (50%), Gaps = 38/238 (15%)

Query: 16  SSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ 75
           S++   G++  AI SY+ AL L+PDFP+A CNL H LQ VC W D      ++ SI+  Q
Sbjct: 469 SAYKDSGHVEAAITSYKQALLLRPDFPEATCNLLHTLQCVCCWEDRSKMFAEVESIIRRQ 528

Query: 76  LDKNRLPSVHPHHSMLYPLTHEYRKAIAARHANLCLLKAMRAKVWQARTESPLFCVQRYA 135
           ++ + LPSV P H++ YP+       I+ ++A  C + A R  +       P        
Sbjct: 529 INMSVLPSVQPFHAIAYPIDPILALEISRKYAAHCSIIASRFGL------PPFTHPAGLP 582

Query: 136 QRLESLYKVMWDRYSQ----NLPVTHITQA---------------------------KIA 164
            + E  +K +   Y      N P++H+  +                           +I 
Sbjct: 583 VKREGGFKRLRIGYVSSDFGNHPLSHLMGSVFGMHNRENVEVFCYALSANDNTEWRQRIQ 642

Query: 165 REAEHFLDLSQVPCNGKAADRIHKDGIHILVNMNGYTKGARNEIFALRPAPIQSSFTA 222
            EAEHFLD+S +  +   A  I++D I IL+N+NGYTKGARNEIFA++PAPIQ S+  
Sbjct: 643 SEAEHFLDVSAMSSDA-IAKIINQDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMG 699

O-linked N-acetylglucosamine transferase (OGT) that mediates O-glycosylation of capsid protein (CP) of virus in case of infection by Plum pox virus. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Its OGT activity has been proved in vitro but not in vivo. Required with SPY for gamete and seed development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
332029693	1087	UDP-N-acetylglucosamine--peptide N-acety	0.882	0.180	0.686	5e-76
229577290	1061	O-glycosyltransferase [Nasonia vitripenn	0.864	0.180	0.674	7e-76
340715918	1095	PREDICTED: UDP-N-acetylglucosamine--pept	0.882	0.178	0.682	9e-76
350396796	1065	PREDICTED: UDP-N-acetylglucosamine--pept	0.882	0.184	0.682	9e-76
340715916	1065	PREDICTED: UDP-N-acetylglucosamine--pept	0.882	0.184	0.682	9e-76
307193762	1180	UDP-N-acetylglucosamine--peptide N-acety	0.882	0.166	0.691	1e-75
383866051	1094	PREDICTED: UDP-N-acetylglucosamine--pept	0.842	0.170	0.677	2e-75
110760723	1095	PREDICTED: UDP-N-acetylglucosamine--pept	0.882	0.178	0.672	6e-75
380019747	1095	PREDICTED: UDP-N-acetylglucosamine--pept	0.882	0.178	0.672	6e-75
380019749	1065	PREDICTED: UDP-N-acetylglucosamine--pept	0.882	0.184	0.672	7e-75

>gi|332029693|gb|EGI69572.1| UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit [Acromyrmex echinatior]

 Score =  289 bits (740), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 147/214 (68%), Positives = 162/214 (75%), Gaps = 18/214 (8%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
           GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL
Sbjct: 485 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 544

Query: 82  PSVHPHHSMLYPLTHEYRKAIAARHANLCLLK---------------AMRAKVWQARTES 126
           PSVHPHHSMLYPL+HE+RKAIAARHANLC+ K               + R K+    ++ 
Sbjct: 545 PSVHPHHSMLYPLSHEFRKAIAARHANLCIEKIHVLHKQPYKYPRTISTRLKIGYVSSDF 604

Query: 127 PLFCVQRYAQRLESLY---KVMWDRYSQNLPVTHITQAKIAREAEHFLDLSQVPCNGKAA 183
                    Q +  L+   KV    Y+ +       +AKIARE EHF+DLSQ+PCNGKAA
Sbjct: 605 GNHPTSHLMQSIPGLHEREKVEIFCYALSADDGTTFRAKIARETEHFVDLSQIPCNGKAA 664

Query: 184 DRIHKDGIHILVNMNGYTKGARNEIFALRPAPIQ 217
           DRI+ DGIHILVNMNGYTKGARNEIFALRPAPIQ
Sbjct: 665 DRINADGIHILVNMNGYTKGARNEIFALRPAPIQ 698

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|229577290|ref|NP_001153341.1| O-glycosyltransferase [Nasonia vitripennis]

 Score =  289 bits (739), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 147/218 (67%), Positives = 162/218 (74%), Gaps = 26/218 (11%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
           GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL
Sbjct: 457 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 516

Query: 82  PSVHPHHSMLYPLTHEYRKAIAARHANLCLLK---------------AMRAKVWQARTES 126
           PSVHPHHSMLYPL+H++RKAIAARHANLC+ K                MR K+    ++ 
Sbjct: 517 PSVHPHHSMLYPLSHDFRKAIAARHANLCIEKIHVLHKQPFKYPREAGMRLKIGYVSSDF 576

Query: 127 PLFCVQRYAQRLESLYKVMWDR-------YSQNLPVTHITQAKIAREAEHFLDLSQVPCN 179
                    Q +  L+    DR       Y+ +       + KIARE+EHF+DLSQVPCN
Sbjct: 577 GNHPTSHLMQSIPGLH----DRNNVEIFCYALSSDDGTTFRGKIARESEHFVDLSQVPCN 632

Query: 180 GKAADRIHKDGIHILVNMNGYTKGARNEIFALRPAPIQ 217
           GKAADRI+ DGIHILVNMNGYTKGARNEIFALRPAPIQ
Sbjct: 633 GKAADRINSDGIHILVNMNGYTKGARNEIFALRPAPIQ 670

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715918|ref|XP_003396454.1| PREDICTED: UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit-like isoform 2 [Bombus terrestris]

 Score =  288 bits (738), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 146/214 (68%), Positives = 162/214 (75%), Gaps = 18/214 (8%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
           GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL
Sbjct: 492 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 551

Query: 82  PSVHPHHSMLYPLTHEYRKAIAARHANLCLLK---------------AMRAKVWQARTES 126
           PSVHPHHSMLYPL+HE+RKAIAARHANLC+ K                 R K+    ++ 
Sbjct: 552 PSVHPHHSMLYPLSHEFRKAIAARHANLCIEKIHVLHKQPYKYPREIGARLKIGYVSSDF 611

Query: 127 PLFCVQRYAQRLESLYK---VMWDRYSQNLPVTHITQAKIAREAEHFLDLSQVPCNGKAA 183
                    Q +  L++   V    Y+ +       +AKIAREAEHF+DLSQ+PCNGKAA
Sbjct: 612 GNHPTSHLMQSIPGLHERQNVEIFCYALSADDGTTFRAKIAREAEHFVDLSQIPCNGKAA 671

Query: 184 DRIHKDGIHILVNMNGYTKGARNEIFALRPAPIQ 217
           DRI+ DGIHILVNMNGYTKGARNEIFALRPAP+Q
Sbjct: 672 DRINADGIHILVNMNGYTKGARNEIFALRPAPVQ 705

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350396796|ref|XP_003484668.1| PREDICTED: UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit-like [Bombus impatiens]

 Score =  288 bits (738), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 146/214 (68%), Positives = 162/214 (75%), Gaps = 18/214 (8%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
           GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL
Sbjct: 462 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 521

Query: 82  PSVHPHHSMLYPLTHEYRKAIAARHANLCLLK---------------AMRAKVWQARTES 126
           PSVHPHHSMLYPL+HE+RKAIAARHANLC+ K                 R K+    ++ 
Sbjct: 522 PSVHPHHSMLYPLSHEFRKAIAARHANLCIEKIHVLHKQPYKYPREIGARLKIGYVSSDF 581

Query: 127 PLFCVQRYAQRLESLYK---VMWDRYSQNLPVTHITQAKIAREAEHFLDLSQVPCNGKAA 183
                    Q +  L++   V    Y+ +       +AKIAREAEHF+DLSQ+PCNGKAA
Sbjct: 582 GNHPTSHLMQSIPGLHERQNVEIFCYALSADDGTTFRAKIAREAEHFVDLSQIPCNGKAA 641

Query: 184 DRIHKDGIHILVNMNGYTKGARNEIFALRPAPIQ 217
           DRI+ DGIHILVNMNGYTKGARNEIFALRPAP+Q
Sbjct: 642 DRINADGIHILVNMNGYTKGARNEIFALRPAPVQ 675

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715916|ref|XP_003396453.1| PREDICTED: UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit-like isoform 1 [Bombus terrestris]

 Score =  288 bits (738), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 146/214 (68%), Positives = 162/214 (75%), Gaps = 18/214 (8%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
           GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL
Sbjct: 462 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 521

Query: 82  PSVHPHHSMLYPLTHEYRKAIAARHANLCLLK---------------AMRAKVWQARTES 126
           PSVHPHHSMLYPL+HE+RKAIAARHANLC+ K                 R K+    ++ 
Sbjct: 522 PSVHPHHSMLYPLSHEFRKAIAARHANLCIEKIHVLHKQPYKYPREIGARLKIGYVSSDF 581

Query: 127 PLFCVQRYAQRLESLYK---VMWDRYSQNLPVTHITQAKIAREAEHFLDLSQVPCNGKAA 183
                    Q +  L++   V    Y+ +       +AKIAREAEHF+DLSQ+PCNGKAA
Sbjct: 582 GNHPTSHLMQSIPGLHERQNVEIFCYALSADDGTTFRAKIAREAEHFVDLSQIPCNGKAA 641

Query: 184 DRIHKDGIHILVNMNGYTKGARNEIFALRPAPIQ 217
           DRI+ DGIHILVNMNGYTKGARNEIFALRPAP+Q
Sbjct: 642 DRINADGIHILVNMNGYTKGARNEIFALRPAPVQ 675

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307193762|gb|EFN76443.1| UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit [Harpegnathos saltator]

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 148/214 (69%), Positives = 162/214 (75%), Gaps = 18/214 (8%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
           GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL
Sbjct: 578 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 637

Query: 82  PSVHPHHSMLYPLTHEYRKAIAARHANLCLLK---------------AMRAKVWQARTES 126
           PSVHPHHSMLYPL+HE+RKAIAARHANLC+ K                +R K+    ++ 
Sbjct: 638 PSVHPHHSMLYPLSHEFRKAIAARHANLCIEKIHVLHKQPYKYPRAVGIRLKIGYVSSDF 697

Query: 127 PLFCVQRYAQRLESLY---KVMWDRYSQNLPVTHITQAKIAREAEHFLDLSQVPCNGKAA 183
                    Q +  L+   KV    Y+ +       +AKIAREAEHF+DLSQV CNGKAA
Sbjct: 698 GNHPTSHLMQSIPGLHDREKVEIFCYALSNDDGTTFRAKIAREAEHFVDLSQVACNGKAA 757

Query: 184 DRIHKDGIHILVNMNGYTKGARNEIFALRPAPIQ 217
           DRI+ DGIHILVNMNGYTKGARNEIFALRPAPIQ
Sbjct: 758 DRINADGIHILVNMNGYTKGARNEIFALRPAPIQ 791

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383866051|ref|XP_003708485.1| PREDICTED: UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit-like [Megachile rotundata]

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 151/223 (67%), Positives = 161/223 (72%), Gaps = 36/223 (16%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
           GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL
Sbjct: 492 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 551

Query: 82  PSVHPHHSMLYPLTHEYRKAIAARHANLCLLKAMRAKVWQARTESPLFCVQRYAQRLESL 141
           PSVHPHHSMLYPL+HE+RKAIAARHANLC+ K           + P    +    RL   
Sbjct: 552 PSVHPHHSMLYPLSHEFRKAIAARHANLCIEKI------HVLHKQPYKYPREVGNRLRIG 605

Query: 142 YKVMWDRYSQNLPVTHITQ---------------------------AKIAREAEHFLDLS 174
           Y V  D    N P +H+ Q                           AKIAREAEHF+DLS
Sbjct: 606 Y-VSSD--FGNHPTSHLMQSIPGLHNRQTVEIFCYALSADDGTTFRAKIAREAEHFIDLS 662

Query: 175 QVPCNGKAADRIHKDGIHILVNMNGYTKGARNEIFALRPAPIQ 217
           Q+PCNGKAADRI+ DGIHILVNMNGYTKGARNEIFALRPAPIQ
Sbjct: 663 QIPCNGKAADRINADGIHILVNMNGYTKGARNEIFALRPAPIQ 705

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110760723|ref|XP_623820.2| PREDICTED: UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform 2 [Apis mellifera]

 Score =  286 bits (731), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 144/214 (67%), Positives = 161/214 (75%), Gaps = 18/214 (8%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
           GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL
Sbjct: 492 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 551

Query: 82  PSVHPHHSMLYPLTHEYRKAIAARHANLCLLK---------------AMRAKVWQARTES 126
           PSVHPHHSMLYPL+HE+RKAIAARHANLC+ K                 R ++    ++ 
Sbjct: 552 PSVHPHHSMLYPLSHEFRKAIAARHANLCIEKIHVLHKQPYKYPREIGGRLRIGYVSSDF 611

Query: 127 PLFCVQRYAQRLESLYK---VMWDRYSQNLPVTHITQAKIAREAEHFLDLSQVPCNGKAA 183
                    Q +  L++   V    Y+ +       +AKIARE EHF+DLSQ+PCNGKAA
Sbjct: 612 GNHPTSHLMQSIPGLHERQNVEIFCYALSADDGTTFRAKIARETEHFVDLSQIPCNGKAA 671

Query: 184 DRIHKDGIHILVNMNGYTKGARNEIFALRPAPIQ 217
           DRI+ DGIHILVNMNGYTKGARNEIFALRPAP+Q
Sbjct: 672 DRINADGIHILVNMNGYTKGARNEIFALRPAPVQ 705

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380019747|ref|XP_003693764.1| PREDICTED: UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit-like isoform 1 [Apis florea]

 Score =  286 bits (731), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 144/214 (67%), Positives = 161/214 (75%), Gaps = 18/214 (8%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
           GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL
Sbjct: 492 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 551

Query: 82  PSVHPHHSMLYPLTHEYRKAIAARHANLCLLK---------------AMRAKVWQARTES 126
           PSVHPHHSMLYPL+HE+RKAIAARHANLC+ K                 R ++    ++ 
Sbjct: 552 PSVHPHHSMLYPLSHEFRKAIAARHANLCIEKIHVLHKQPYKYPREIGGRLRIGYVSSDF 611

Query: 127 PLFCVQRYAQRLESLYK---VMWDRYSQNLPVTHITQAKIAREAEHFLDLSQVPCNGKAA 183
                    Q +  L++   V    Y+ +       +AKIARE EHF+DLSQ+PCNGKAA
Sbjct: 612 GNHPTSHLMQSIPGLHERQNVEIFCYALSADDGTTFRAKIARETEHFVDLSQIPCNGKAA 671

Query: 184 DRIHKDGIHILVNMNGYTKGARNEIFALRPAPIQ 217
           DRI+ DGIHILVNMNGYTKGARNEIFALRPAP+Q
Sbjct: 672 DRINADGIHILVNMNGYTKGARNEIFALRPAPVQ 705

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380019749|ref|XP_003693765.1| PREDICTED: UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit-like isoform 2 [Apis florea]

 Score =  285 bits (730), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 144/214 (67%), Positives = 161/214 (75%), Gaps = 18/214 (8%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
           GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL
Sbjct: 462 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 521

Query: 82  PSVHPHHSMLYPLTHEYRKAIAARHANLCLLK---------------AMRAKVWQARTES 126
           PSVHPHHSMLYPL+HE+RKAIAARHANLC+ K                 R ++    ++ 
Sbjct: 522 PSVHPHHSMLYPLSHEFRKAIAARHANLCIEKIHVLHKQPYKYPREIGGRLRIGYVSSDF 581

Query: 127 PLFCVQRYAQRLESLYK---VMWDRYSQNLPVTHITQAKIAREAEHFLDLSQVPCNGKAA 183
                    Q +  L++   V    Y+ +       +AKIARE EHF+DLSQ+PCNGKAA
Sbjct: 582 GNHPTSHLMQSIPGLHERQNVEIFCYALSADDGTTFRAKIARETEHFVDLSQIPCNGKAA 641

Query: 184 DRIHKDGIHILVNMNGYTKGARNEIFALRPAPIQ 217
           DRI+ DGIHILVNMNGYTKGARNEIFALRPAP+Q
Sbjct: 642 DRINADGIHILVNMNGYTKGARNEIFALRPAPVQ 675

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
FB|FBgn0261403	1059	sxc "super sex combs" [Drosoph	0.414	0.086	0.923	2.6e-67
RGD|62060	1036	Ogt "O-linked N-acetylglucosam	0.414	0.088	0.891	8.5e-67
MGI|MGI:1339639	1046	Ogt "O-linked N-acetylglucosam	0.414	0.087	0.891	8.9e-67
ZFIN|ZDB-GENE-030131-9631	1062	ogt.1 "O-linked N-acetylglucos	0.414	0.086	0.880	9.8e-67
UNIPROTKB|F1NX56	1035	OGT "Uncharacterized protein"	0.414	0.088	0.880	1.8e-66
UNIPROTKB|A5D7G1	1036	OGT "OGT protein" [Bos taurus	0.414	0.088	0.880	1.8e-66
UNIPROTKB|O15294	1046	OGT "UDP-N-acetylglucosamine--	0.414	0.087	0.880	1.9e-66
UNIPROTKB|F1RSV2	1046	OGT "UDP-N-acetylglucosamine--	0.414	0.087	0.880	1.9e-66
UNIPROTKB|P81436	1046	OGT "UDP-N-acetylglucosamine--	0.414	0.087	0.880	1.9e-66
UNIPROTKB|E2QSQ5	1046	OGT "Uncharacterized protein"	0.414	0.087	0.880	1.9e-66

FB|FBgn0261403 sxc "super sex combs" [Drosophila melanogaster (taxid:7227)]

 Score = 463 (168.0 bits), Expect = 2.6e-67, Sum P(2) = 2.6e-67
 Identities = 85/92 (92%), Positives = 88/92 (95%)

Query:    22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
             GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY+ RMKKLVSIV EQL+KNRL
Sbjct:   472 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDIRMKKLVSIVTEQLEKNRL 531

Query:    82 PSVHPHHSMLYPLTHEYRKAIAARHANLCLLK 113
             PSVHPHHSMLYPLTH+ RKAIAARHANLCL K
Sbjct:   532 PSVHPHHSMLYPLTHDCRKAIAARHANLCLEK 563

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=NAS

GO:0006486 "protein glycosylation" evidence=IMP

GO:0035220 "wing disc development" evidence=IMP

GO:0008375 "acetylglucosaminyltransferase activity" evidence=IMP

RGD|62060 Ogt "O-linked N-acetylglucosamine (GlcNAc) transferase" [Rattus norvegicus (taxid:10116)]

 Score = 448 (162.8 bits), Expect = 8.5e-67, Sum P(2) = 8.5e-67
 Identities = 82/92 (89%), Positives = 86/92 (93%)

Query:    22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
             GNIPEAI SYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY+ RMKKLVSIVAEQL+KNRL
Sbjct:   433 GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAEQLEKNRL 492

Query:    82 PSVHPHHSMLYPLTHEYRKAIAARHANLCLLK 113
             PSVHPHHSMLYPL+H +RKAIA RH NLCL K
Sbjct:   493 PSVHPHHSMLYPLSHGFRKAIAERHGNLCLDK 524

GO:0000123 "histone acetyltransferase complex" evidence=IEA;ISO;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=IEA;ISO;ISS

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005813 "centrosome" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=ISO;IDA

GO:0005886 "plasma membrane" evidence=IEA;ISO;ISS

GO:0006110 "regulation of glycolysis" evidence=IEA;ISO;ISS

GO:0006493 "protein O-linked glycosylation" evidence=ISO;IDA

GO:0006917 "induction of apoptosis" evidence=IEA;ISO;ISS

GO:0008047 "enzyme activator activity" evidence=IEA;ISO

GO:0016262 "protein N-acetylglucosaminyltransferase activity" evidence=ISO;IDA

GO:0030854 "positive regulation of granulocyte differentiation" evidence=IEA;ISO

GO:0032868 "response to insulin stimulus" evidence=IEA;ISO

GO:0035020 "regulation of Rac protein signal transduction" evidence=IEA;ISO

GO:0042277 "peptide binding" evidence=IDA

GO:0043085 "positive regulation of catalytic activity" evidence=ISO

GO:0043981 "histone H4-K5 acetylation" evidence=ISO;ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISO;ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISO;ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA;ISO;ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA;ISO;ISS

GO:0045862 "positive regulation of proteolysis" evidence=IEA;ISO;ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0046626 "regulation of insulin receptor signaling pathway" evidence=IEA;ISO

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA;ISO;ISS

GO:0048015 "phosphatidylinositol-mediated signaling" evidence=IEA;ISO;ISS

GO:0048029 "monosaccharide binding" evidence=IDA

GO:0051571 "positive regulation of histone H3-K4 methylation" evidence=IEA;ISO

GO:0070207 "protein homotrimerization" evidence=IDA

GO:0070688 "MLL5-L complex" evidence=IEA;ISO

GO:0071300 "cellular response to retinoic acid" evidence=IEA;ISO

GO:0080182 "histone H3-K4 trimethylation" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

MGI|MGI:1339639 Ogt "O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)" [Mus musculus (taxid:10090)]

 Score = 448 (162.8 bits), Expect = 8.9e-67, Sum P(2) = 8.9e-67
 Identities = 82/92 (89%), Positives = 86/92 (93%)

Query:    22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
             GNIPEAI SYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY+ RMKKLVSIVAEQL+KNRL
Sbjct:   443 GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAEQLEKNRL 502

Query:    82 PSVHPHHSMLYPLTHEYRKAIAARHANLCLLK 113
             PSVHPHHSMLYPL+H +RKAIA RH NLCL K
Sbjct:   503 PSVHPHHSMLYPLSHGFRKAIAERHGNLCLDK 534

GO:0000123 "histone acetyltransferase complex" evidence=ISO

GO:0003824 "catalytic activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=ISO

GO:0005622 "intracellular" evidence=TAS

GO:0005634 "nucleus" evidence=ISO;TAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006110 "regulation of glycolysis" evidence=ISO

GO:0006493 "protein O-linked glycosylation" evidence=ISO;ISS;IDA;TAS

GO:0006917 "induction of apoptosis" evidence=ISO

GO:0008047 "enzyme activator activity" evidence=ISO

GO:0008080 "N-acetyltransferase activity" evidence=TAS

GO:0008289 "lipid binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016262 "protein N-acetylglucosaminyltransferase activity" evidence=ISO

GO:0016568 "chromatin modification" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

GO:0030854 "positive regulation of granulocyte differentiation" evidence=ISO

GO:0032868 "response to insulin stimulus" evidence=ISO

GO:0035020 "regulation of Rac protein signal transduction" evidence=ISO

GO:0042277 "peptide binding" evidence=ISO

GO:0043085 "positive regulation of catalytic activity" evidence=ISO

GO:0043981 "histone H4-K5 acetylation" evidence=ISO

GO:0043982 "histone H4-K8 acetylation" evidence=ISO

GO:0043984 "histone H4-K16 acetylation" evidence=ISO

GO:0045862 "positive regulation of proteolysis" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0046626 "regulation of insulin receptor signaling pathway" evidence=ISO

GO:0048015 "phosphatidylinositol-mediated signaling" evidence=ISO

GO:0048029 "monosaccharide binding" evidence=ISO

GO:0051571 "positive regulation of histone H3-K4 methylation" evidence=ISO

GO:0070207 "protein homotrimerization" evidence=ISO

GO:0070688 "MLL5-L complex" evidence=ISO

GO:0071300 "cellular response to retinoic acid" evidence=ISO

GO:0080182 "histone H3-K4 trimethylation" evidence=ISO

ZFIN|ZDB-GENE-030131-9631 ogt.1 "O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) 1" [Danio rerio (taxid:7955)]

 Score = 445 (161.7 bits), Expect = 9.8e-67, Sum P(2) = 9.8e-67
 Identities = 81/92 (88%), Positives = 86/92 (93%)

Query:    22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
             GNIPEAI SYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY+ RMKKLVSIVA+QL+KNRL
Sbjct:   443 GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRL 502

Query:    82 PSVHPHHSMLYPLTHEYRKAIAARHANLCLLK 113
             PSVHPHHSMLYPL+H +RKAIA RH NLCL K
Sbjct:   503 PSVHPHHSMLYPLSHGFRKAIAERHGNLCLDK 534

GO:0016262 "protein N-acetylglucosaminyltransferase activity" evidence=IMP;IDA

GO:0006493 "protein O-linked glycosylation" evidence=IDA

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|F1NX56 OGT "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 447 (162.4 bits), Expect = 1.8e-66, Sum P(2) = 1.8e-66
 Identities = 81/92 (88%), Positives = 86/92 (93%)

Query:    22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
             GNIPEAI SYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY+ RMKKLVSIVA+QL+KNRL
Sbjct:   433 GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRL 492

Query:    82 PSVHPHHSMLYPLTHEYRKAIAARHANLCLLK 113
             PSVHPHHSMLYPL+H +RKAIA RH NLCL K
Sbjct:   493 PSVHPHHSMLYPLSHSFRKAIAERHGNLCLDK 524

GO:0000123 "histone acetyltransferase complex" evidence=IEA

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006110 "regulation of glycolysis" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0008047 "enzyme activator activity" evidence=IEA

GO:0030854 "positive regulation of granulocyte differentiation" evidence=IEA

GO:0032868 "response to insulin stimulus" evidence=IEA

GO:0035020 "regulation of Rac protein signal transduction" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0045862 "positive regulation of proteolysis" evidence=IEA

GO:0046626 "regulation of insulin receptor signaling pathway" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0048015 "phosphatidylinositol-mediated signaling" evidence=IEA

GO:0051571 "positive regulation of histone H3-K4 methylation" evidence=IEA

GO:0070688 "MLL5-L complex" evidence=IEA

GO:0071300 "cellular response to retinoic acid" evidence=IEA

UNIPROTKB|A5D7G1 OGT "OGT protein" [Bos taurus (taxid:9913)]

 Score = 445 (161.7 bits), Expect = 1.8e-66, Sum P(2) = 1.8e-66
 Identities = 81/92 (88%), Positives = 86/92 (93%)

Query:    22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
             GNIPEAI SYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY+ RMKKLVSIVA+QL+KNRL
Sbjct:   433 GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRL 492

Query:    82 PSVHPHHSMLYPLTHEYRKAIAARHANLCLLK 113
             PSVHPHHSMLYPL+H +RKAIA RH NLCL K
Sbjct:   493 PSVHPHHSMLYPLSHGFRKAIAERHGNLCLDK 524

GO:0071300 "cellular response to retinoic acid" evidence=IEA

GO:0070688 "MLL5-L complex" evidence=IEA

GO:0051571 "positive regulation of histone H3-K4 methylation" evidence=IEA

GO:0048015 "phosphatidylinositol-mediated signaling" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0046626 "regulation of insulin receptor signaling pathway" evidence=IEA

GO:0045862 "positive regulation of proteolysis" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0035020 "regulation of Rac protein signal transduction" evidence=IEA

GO:0032868 "response to insulin stimulus" evidence=IEA

GO:0030854 "positive regulation of granulocyte differentiation" evidence=IEA

GO:0008047 "enzyme activator activity" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0006110 "regulation of glycolysis" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=IEA

GO:0000123 "histone acetyltransferase complex" evidence=IEA

UNIPROTKB|O15294 OGT "UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit" [Homo sapiens (taxid:9606)]

 Score = 445 (161.7 bits), Expect = 1.9e-66, Sum P(2) = 1.9e-66
 Identities = 81/92 (88%), Positives = 86/92 (93%)

Query:    22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
             GNIPEAI SYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY+ RMKKLVSIVA+QL+KNRL
Sbjct:   443 GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRL 502

Query:    82 PSVHPHHSMLYPLTHEYRKAIAARHANLCLLK 113
             PSVHPHHSMLYPL+H +RKAIA RH NLCL K
Sbjct:   503 PSVHPHHSMLYPLSHGFRKAIAERHGNLCLDK 534

GO:0006915 "apoptotic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016262 "protein N-acetylglucosaminyltransferase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0045862 "positive regulation of proteolysis" evidence=IDA

GO:0006493 "protein O-linked glycosylation" evidence=IMP;IDA

GO:0070688 "MLL5-L complex" evidence=IDA

GO:0043984 "histone H4-K16 acetylation" evidence=IDA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IDA

GO:0000123 "histone acetyltransferase complex" evidence=IDA

GO:0043981 "histone H4-K5 acetylation" evidence=IDA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IDA

GO:0043982 "histone H4-K8 acetylation" evidence=IDA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IDA

GO:0048015 "phosphatidylinositol-mediated signaling" evidence=IDA

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0035020 "regulation of Rac protein signal transduction" evidence=IDA

GO:0032868 "response to insulin stimulus" evidence=IDA

GO:0046626 "regulation of insulin receptor signaling pathway" evidence=IDA

GO:0006917 "induction of apoptosis" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP;IDA

GO:0080182 "histone H3-K4 trimethylation" evidence=IMP

GO:0006110 "regulation of glycolysis" evidence=IDA

GO:0007165 "signal transduction" evidence=TAS

GO:0007584 "response to nutrient" evidence=TAS

GO:0008375 "acetylglucosaminyltransferase activity" evidence=TAS

GO:0051571 "positive regulation of histone H3-K4 methylation" evidence=IDA

GO:0008047 "enzyme activator activity" evidence=IDA

GO:0030854 "positive regulation of granulocyte differentiation" evidence=IMP

GO:0071300 "cellular response to retinoic acid" evidence=IMP

GO:0043085 "positive regulation of catalytic activity" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

UNIPROTKB|F1RSV2 OGT "UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit" [Sus scrofa (taxid:9823)]

 Score = 445 (161.7 bits), Expect = 1.9e-66, Sum P(2) = 1.9e-66
 Identities = 81/92 (88%), Positives = 86/92 (93%)

Query:    22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
             GNIPEAI SYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY+ RMKKLVSIVA+QL+KNRL
Sbjct:   443 GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRL 502

Query:    82 PSVHPHHSMLYPLTHEYRKAIAARHANLCLLK 113
             PSVHPHHSMLYPL+H +RKAIA RH NLCL K
Sbjct:   503 PSVHPHHSMLYPLSHGFRKAIAERHGNLCLDK 534

GO:0071300 "cellular response to retinoic acid" evidence=IEA

GO:0070688 "MLL5-L complex" evidence=IEA

GO:0051571 "positive regulation of histone H3-K4 methylation" evidence=IEA

GO:0048015 "phosphatidylinositol-mediated signaling" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0046626 "regulation of insulin receptor signaling pathway" evidence=IEA

GO:0045862 "positive regulation of proteolysis" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0035020 "regulation of Rac protein signal transduction" evidence=IEA

GO:0032868 "response to insulin stimulus" evidence=IEA

GO:0030854 "positive regulation of granulocyte differentiation" evidence=IEA

GO:0008047 "enzyme activator activity" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0006110 "regulation of glycolysis" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=IEA

GO:0000123 "histone acetyltransferase complex" evidence=IEA

UNIPROTKB|P81436 OGT "UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit" [Oryctolagus cuniculus (taxid:9986)]

 Score = 445 (161.7 bits), Expect = 1.9e-66, Sum P(2) = 1.9e-66
 Identities = 81/92 (88%), Positives = 86/92 (93%)

Query:    22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
             GNIPEAI SYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY+ RMKKLVSIVA+QL+KNRL
Sbjct:   443 GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRL 502

Query:    82 PSVHPHHSMLYPLTHEYRKAIAARHANLCLLK 113
             PSVHPHHSMLYPL+H +RKAIA RH NLCL K
Sbjct:   503 PSVHPHHSMLYPLSHGFRKAIAERHGNLCLDK 534

GO:0000123 "histone acetyltransferase complex" evidence=ISS

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0006110 "regulation of glycolysis" evidence=ISS

GO:0006493 "protein O-linked glycosylation" evidence=ISS

GO:0006917 "induction of apoptosis" evidence=ISS

GO:0016262 "protein N-acetylglucosaminyltransferase activity" evidence=ISS

GO:0043981 "histone H4-K5 acetylation" evidence=ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISS

GO:0048015 "phosphatidylinositol-mediated signaling" evidence=ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=ISS

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=ISS

UNIPROTKB|E2QSQ5 OGT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 445 (161.7 bits), Expect = 1.9e-66, Sum P(2) = 1.9e-66
 Identities = 81/92 (88%), Positives = 86/92 (93%)

Query:    22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
             GNIPEAI SYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY+ RMKKLVSIVA+QL+KNRL
Sbjct:   443 GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRL 502

Query:    82 PSVHPHHSMLYPLTHEYRKAIAARHANLCLLK 113
             PSVHPHHSMLYPL+H +RKAIA RH NLCL K
Sbjct:   503 PSVHPHHSMLYPLSHGFRKAIAERHGNLCLDK 534

GO:0071300 "cellular response to retinoic acid" evidence=IEA

GO:0070688 "MLL5-L complex" evidence=IEA

GO:0051571 "positive regulation of histone H3-K4 methylation" evidence=IEA

GO:0048015 "phosphatidylinositol-mediated signaling" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0046626 "regulation of insulin receptor signaling pathway" evidence=IEA

GO:0045862 "positive regulation of proteolysis" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0035020 "regulation of Rac protein signal transduction" evidence=IEA

GO:0032868 "response to insulin stimulus" evidence=IEA

GO:0030854 "positive regulation of granulocyte differentiation" evidence=IEA

GO:0008047 "enzyme activator activity" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0006110 "regulation of glycolysis" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=IEA

GO:0000123 "histone acetyltransferase complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O18158	OGT1_CAEEL	2, ., 4, ., 1, ., -	0.5638	0.8513	0.1642	yes	N/A
Q27HV0	OGT1_PIG	2, ., 4, ., 1, ., 2, 5, 5	0.6146	0.8873	0.1883	yes	N/A
P81436	OGT1_RABIT	2, ., 4, ., 1, ., 2, 5, 5	0.6146	0.8873	0.1883	yes	N/A
O15294	OGT1_HUMAN	2, ., 4, ., 1, ., 2, 5, 5	0.6146	0.8873	0.1883	yes	N/A
Q8CGY8	OGT1_MOUSE	2, ., 4, ., 1, ., 2, 5, 5	0.6192	0.8873	0.1883	yes	N/A
P56558	OGT1_RAT	2, ., 4, ., 1, ., 2, 5, 5	0.6192	0.8873	0.1901	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	222
pfam13844	468	pfam13844, Glyco_transf_41, Glycosyl transferase f	1e-36
COG3914	620	COG3914, Spy, Predicted O-linked N-acetylglucosami	3e-11
pfam13844	468	pfam13844, Glyco_transf_41, Glycosyl transferase f	5e-10
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-05
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-04

>gnl|CDD|206015 pfam13844, Glyco_transf_41, Glycosyl transferase family 41

 Score =  133 bits (335), Expect = 1e-36
 Identities = 49/58 (84%), Positives = 56/58 (96%)

Query: 160 QAKIAREAEHFLDLSQVPCNGKAADRIHKDGIHILVNMNGYTKGARNEIFALRPAPIQ 217
           ++K+  E+EHF+DLSQ+PCNGKAADRIH+DGIHILVNMNGYTKGARNEIFALRPAPIQ
Sbjct: 47  RSKVMAESEHFVDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNEIFALRPAPIQ 104

This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1. Length = 468

>gnl|CDD|226428 COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

 Score = 61.7 bits (150), Expect = 3e-11
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 149 YSQNLPVTHITQAKIAREAEHFLDLSQVPCNGKAADRIHKDGIHILVNMNGYTKGARNEI 208
           YS   P T   Q +I+   E +  + ++    + A+ I  DGI ILV+++G+T   R ++
Sbjct: 295 YSLGPPHTDALQERISAAVEKWYPIGRMDDA-EIANAIRTDGIDILVDLDGHTVDTRCQV 353

Query: 209 FALRPAPIQSSF 220
           FA RPAPIQ S+
Sbjct: 354 FAHRPAPIQVSW 365

Length = 620

>gnl|CDD|206015 pfam13844, Glyco_transf_41, Glycosyl transferase family 41

 Score = 58.3 bits (141), Expect = 5e-10
 Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 97  EYRKAIAARHAN-LCLLKAMRAKVWQARTESPLFCVQRYAQRLESLYKVMW 146
           EY   IA +       L+ +RAKVW+ART S LF  ++Y Q LE LY  MW
Sbjct: 419 EYED-IAVKLGTDREYLRKIRAKVWKARTSSTLFNTKQYCQDLERLYLKMW 468

This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1. Length = 468

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 6/83 (7%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
           G+  EA++ Y  AL+L PD  DAY NLA     +  + +     +K + +          
Sbjct: 14  GDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL------DPDN 67

Query: 82  PSVHPHHSMLYPLTHEYRKAIAA 104
              + +  + Y    +Y +A+ A
Sbjct: 68  AKAYYNLGLAYYKLGKYEEALEA 90

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
          G+  EAI++Y  AL+L PD  +AY NLA    
Sbjct: 17 GDYDEAIEAYEKALELDPDNAEAYYNLALAYL 48

Length = 69

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 14/50 (28%), Positives = 23/50 (46%)

Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSI 71
          G   EA++ Y  AL+L PD   AY NL      +  + +     +K + +
Sbjct: 48 GKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97

Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	222
KOG4626|consensus	966		100.0
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	100.0
PF13844	468	Glyco_transf_41: Glycosyl transferase family 41; P	99.97
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.36
PRK15359	144	type III secretion system chaperone protein SscB;	99.27
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.22
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	99.14
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.07
KOG4626|consensus	966		99.05
PRK11189	296	lipoprotein NlpI; Provisional	99.01
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.96
KOG0553|consensus	304		98.94
PRK15359	144	type III secretion system chaperone protein SscB;	98.91
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.87
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.87
PRK12370	553	invasion protein regulator; Provisional	98.85
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.81
KOG1125|consensus	579		98.77
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.76
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.76
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.75
PF13428	44	TPR_14: Tetratricopeptide repeat	98.7
PF13371	73	TPR_9: Tetratricopeptide repeat	98.7
PRK11189	296	lipoprotein NlpI; Provisional	98.69
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.69
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.68
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.6
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.59
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.58
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.57
PF13431	34	TPR_17: Tetratricopeptide repeat	98.55
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.54
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.53
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	98.52
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	98.51
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.51
KOG1126|consensus	638		98.5
PRK12370	553	invasion protein regulator; Provisional	98.49
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.48
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.47
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.46
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.44
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.43
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.43
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.42
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.41
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.41
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.41
KOG1126|consensus	638		98.37
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.36
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.33
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.32
KOG1125|consensus	579		98.32
KOG4162|consensus	799		98.31
PRK10803	263	tol-pal system protein YbgF; Provisional	98.31
PRK15331	165	chaperone protein SicA; Provisional	98.29
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.28
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.27
PRK11906	458	transcriptional regulator; Provisional	98.25
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.24
KOG1173|consensus	611		98.24
KOG1155|consensus	559		98.23
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.22
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.22
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.19
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.19
PF12688	120	TPR_5: Tetratrico peptide repeat	98.19
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.19
KOG0543|consensus	397		98.18
KOG0553|consensus	304		98.18
KOG1155|consensus	559		98.17
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.14
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.13
KOG0548|consensus	539		98.13
PLN02789	320	farnesyltranstransferase	98.11
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.11
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.09
KOG0547|consensus	606		98.08
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.07
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.06
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.05
PF13371	73	TPR_9: Tetratricopeptide repeat	98.05
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.02
KOG0547|consensus	606		97.99
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.98
PLN02789	320	farnesyltranstransferase	97.97
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	97.97
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	97.95
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.94
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	97.93
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	97.91
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	97.91
PRK11788	389	tetratricopeptide repeat protein; Provisional	97.88
KOG0548|consensus	539		97.86
KOG2076|consensus	895		97.85
KOG1129|consensus	478		97.85
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.83
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.82
KOG0624|consensus	504		97.81
PF13431	34	TPR_17: Tetratricopeptide repeat	97.81
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.79
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.78
KOG1173|consensus	611		97.75
PRK15331	165	chaperone protein SicA; Provisional	97.74
PRK11788	389	tetratricopeptide repeat protein; Provisional	97.74
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	97.74
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.74
KOG4642|consensus	284		97.74
KOG1156|consensus	700		97.72
KOG4648|consensus	536		97.71
KOG0550|consensus	486		97.7
KOG2076|consensus	895		97.7
PF12688	120	TPR_5: Tetratrico peptide repeat	97.68
KOG4555|consensus	175		97.66
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.65
KOG1128|consensus	777		97.6
PRK10803	263	tol-pal system protein YbgF; Provisional	97.59
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.53
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.53
KOG4234|consensus	271		97.51
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.49
PRK14574	822	hmsH outer membrane protein; Provisional	97.48
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.46
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.45
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.45
KOG4555|consensus	175		97.43
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.39
KOG4642|consensus	284		97.39
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.38
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.37
KOG2002|consensus	1018		97.37
PF13512	142	TPR_18: Tetratricopeptide repeat	97.32
KOG3060|consensus	289		97.31
PRK11906	458	transcriptional regulator; Provisional	97.29
KOG1127|consensus	1238		97.29
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.29
PRK14574	822	hmsH outer membrane protein; Provisional	97.28
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.28
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.28
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.27
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	97.26
KOG0543|consensus	397		97.23
KOG0624|consensus	504		97.2
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.16
KOG1840|consensus	508		97.15
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.15
KOG1128|consensus	777		97.13
KOG1840|consensus	508		97.08
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.08
KOG2003|consensus	840		97.03
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	97.02
KOG2003|consensus	840		96.98
KOG1308|consensus	377		96.98
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.95
KOG2002|consensus	1018		96.94
KOG1156|consensus	700		96.93
KOG1174|consensus	564		96.92
PRK10941	269	hypothetical protein; Provisional	96.91
KOG3060|consensus	289		96.89
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.87
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	96.87
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.86
KOG0550|consensus	486		96.85
KOG4162|consensus	799		96.84
PF13512	142	TPR_18: Tetratricopeptide repeat	96.83
KOG1127|consensus	1238		96.83
KOG4648|consensus	536		96.79
KOG1174|consensus	564		96.75
KOG1129|consensus	478		96.65
KOG3081|consensus	299		96.52
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	96.52
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	96.5
PF13428	44	TPR_14: Tetratricopeptide repeat	96.42
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	96.39
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.37
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	96.35
PRK14720	906	transcript cleavage factor/unknown domain fusion p	96.3
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.3
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.28
KOG4234|consensus	271		96.28
KOG3824|consensus	472		96.27
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.17
KOG0376|consensus	476		96.12
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.02
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.0
KOG0545|consensus	329		95.92
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.91
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	95.86
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	95.74
PLN03077	857	Protein ECB2; Provisional	95.69
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	95.66
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.66
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	95.59
KOG3824|consensus	472		95.56
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.47
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.47
KOG2796|consensus	366		95.41
COG4105	254	ComL DNA uptake lipoprotein [General function pred	95.4
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	95.3
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.24
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	95.17
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	95.16
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.08
KOG1130|consensus	639		95.02
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	94.84
COG4700	251	Uncharacterized protein conserved in bacteria cont	94.73
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	94.65
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	94.64
KOG0495|consensus	913		94.54
KOG4340|consensus	459		94.48
KOG2376|consensus	652		94.43
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.42
KOG2053|consensus	932		94.41
KOG3785|consensus	557		94.35
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	94.18
COG4700	251	Uncharacterized protein conserved in bacteria cont	94.1
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	94.04
KOG0545|consensus	329		93.77
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	93.58
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.58
KOG1130|consensus	639		93.52
KOG0376|consensus	476		93.38
KOG2471|consensus	696		93.17
COG2912	269	Uncharacterized conserved protein [Function unknow	92.97
KOG0551|consensus	390		92.85
COG4976	287	Predicted methyltransferase (contains TPR repeat)	92.78
COG3118	304	Thioredoxin domain-containing protein [Posttransla	92.6
KOG2610|consensus	491		92.59
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	92.49
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	92.32
COG0457	291	NrfG FOG: TPR repeat [General function prediction	92.23
PRK04841	903	transcriptional regulator MalT; Provisional	92.22
COG0457	291	NrfG FOG: TPR repeat [General function prediction	92.17
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	92.14
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	92.1
KOG1308|consensus	377		91.97
KOG4340|consensus	459		91.85
PRK04841	903	transcriptional regulator MalT; Provisional	91.62
PLN03218	1060	maturation of RBCL 1; Provisional	91.61
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	91.6
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	91.45
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	91.4
PLN03218	1060	maturation of RBCL 1; Provisional	91.26
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	91.21
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	91.04
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	91.03
KOG0495|consensus	913		90.81
KOG0551|consensus	390		90.51
KOG2376|consensus	652		89.21
COG3118	304	Thioredoxin domain-containing protein [Posttransla	88.71
COG4455	273	ImpE Protein of avirulence locus involved in tempe	88.47
KOG1941|consensus	518		88.25
COG3947	361	Response regulator containing CheY-like receiver a	88.19
KOG2396|consensus	568		88.04
PLN03077	857	Protein ECB2; Provisional	87.85
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	87.74
KOG1914|consensus	656		87.39
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	87.28
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	87.2
KOG3364|consensus	149		86.77
PRK10941	269	hypothetical protein; Provisional	86.32
KOG2053|consensus	932		86.23
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	86.14
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	85.3
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	84.98
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	84.23
KOG4507|consensus	886		83.81
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	83.68
KOG2610|consensus	491		83.59
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	83.43
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	83.31
PF12854	34	PPR_1: PPR repeat	83.24
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	82.84
KOG4507|consensus	886		82.48
KOG3785|consensus	557		82.13
COG4105	254	ComL DNA uptake lipoprotein [General function pred	82.08
KOG1585|consensus	308		81.65
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	81.36
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	81.33
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	80.99
KOG1310|consensus	758		80.99

>KOG4626|consensus

Probab=100.00  E-value=3.7e-52  Score=363.81  Aligned_cols=211  Identities=64%  Similarity=0.990  Sum_probs=198.0

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCC
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL   81 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~l~~~~~   81 (222)
                      ..+|.++++|.|||.+|.+.|+.++||+.|++||+++|++++++.|++++++-.|+|.+....++++.+++.++++..++
T Consensus       450 ~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~sivrdql~~~rl  529 (966)
T KOG4626|consen  450 QINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVSIVRDQLEKNRL  529 (966)
T ss_pred             hcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHHHHHHHHHHhhhcC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccccccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCcccc---hhccccceeeEeeccccccCCCchhh
Q psy17695         82 PSVHPHHSMLYPLTHEYRKAIAARHANLCLLKAMRAKVWQARTESPLFCVQ---RYAQRLESLYKVMWDRYSQNLPVTHI  158 (222)
Q Consensus        82 ~~~~p~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~rLRIGYvS~~d~~f~~H~v~~l  158 (222)
                      |++.||+.+++|+++..++.+++.|+..|..++..      ...+|+.++.   .+++|||||||| +|  |.+|||++|
T Consensus       530 psvhP~hsm~ypl~~~~~~aia~k~a~~c~~~~~~------~~k~pyth~~~l~~~~~rlrIGYvS-sD--FgnHp~Shl  600 (966)
T KOG4626|consen  530 PSVHPHHSMLYPLSHILRKAIAAKHANLCLDKVHV------LGKPPYTHPDNLKVKEGRLRIGYVS-SD--FGNHPTSHL  600 (966)
T ss_pred             CccCcccccccccchHHHHHHHHHHhhhhHHHHHh------ccCCCCCChhhCCCCcCceEEEeec-cc--ccCCchHHH
Confidence            99999999999999999999999999999887652      3445665553   356999999999 99  999999999


Q ss_pred             H---------------------------HHHHHhhhcceeecCCCCChHHHHHHHHhCCCcEEEeCCCCCCCcchhhhhh
Q psy17695        159 T---------------------------QAKIAREAEHFLDLSQVPCNGKAADRIHKDGIHILVNMNGYTKGARNEIFAL  211 (222)
Q Consensus       159 ~---------------------------~~~~~~~~~~~~~~~~~~~~~~~a~~i~~d~iDILvDL~G~t~~~r~~i~a~  211 (222)
                      |                           |.++.+..+||+|++++++ ..+|+.|++|+|||||+|+|||+|+|.+|||+
T Consensus       601 mqsv~gmHdr~kveVfcYals~~d~t~fR~kv~~e~ehf~Dls~i~~-~kiA~~I~qD~I~ILvnlnGyTkgarneifAl  679 (966)
T KOG4626|consen  601 MQSVPGMHDRSKVEVFCYALSVNDGTNFRDKVMKEAEHFVDLSQIPC-NKIADKIRQDKIHILVNLNGYTKGARNEIFAL  679 (966)
T ss_pred             hccCcCcCCccceEEEEEEeecCCCchHHHHHHhhccceeehhcCCh-HHHHHHHhhcCceEEEeccccccccccceeec
Confidence            9                           7899999999999999998 79999999999999999999999999999999


Q ss_pred             CCchhhhcccC
Q psy17695        212 RPAPIQSSFTA  222 (222)
Q Consensus       212 rpAPvQv~~lG  222 (222)
                      |||||||+|+|
T Consensus       680 rPAPIQv~wlG  690 (966)
T KOG4626|consen  680 RPAPIQVMWLG  690 (966)
T ss_pred             cCCceeEEeec
Confidence            99999999998

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.1e-36  Score=264.22  Aligned_cols=213  Identities=22%  Similarity=0.238  Sum_probs=161.3

Q ss_pred             CCCCCCCHHHHHHHHHhcccCCCcHHHHHHHHH-HHHhCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPGNIPEAIQSYRT-ALKLKPDFPDAYCNL------AHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~-Al~l~P~~~~a~~~l------~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      +..+|+++.++.+||.++...|....++..+.. +.++.|++.+....+      +..+..+++..++.....+++.+.|
T Consensus        94 l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p  173 (620)
T COG3914          94 LSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLP  173 (620)
T ss_pred             HhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhh
Confidence            356889999999999999988887777766655 899999998887777      6666677777777777788777777


Q ss_pred             hhhhc-----------CCCC---------------CCCccccccccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCC
Q psy17695         74 EQLDK-----------NRLP---------------SVHPHHSMLYPLTHEYRKAIAARHANLCLLKAMRAKVWQARTESP  127 (222)
Q Consensus        74 ~~l~~-----------~~~~---------------~~~p~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  127 (222)
                      +...-           .+-+               ...+|+...+.++|..++.++..+.+.+.......    .+. +.
T Consensus       174 ~~~~~~~~~~~~r~~~cs~~~~~~tnl~~~~~~~~~~~~~~~~~~~d~p~~~l~~~~q~~~i~~~~~~~~----~~~-~~  248 (620)
T COG3914         174 KYPRVLGALMTARQEQCSWPEEAPTNLLSQLALFLGIYGFSLAYLADDPLKNLAIANQLLKILSQNAPEL----VRF-PI  248 (620)
T ss_pred             hhhhhHhHHHHHHHHhccchhccchHHHHHHHHHhhccccchhhhccchhhhHHHHHHHHHHhcccCCCc----ccc-cc
Confidence            64111           0000               01234444455667777777776655443111100    000 00


Q ss_pred             C-cccchhccccceeeEeeccccccCCCchhhH---------------------------HHHHHhhhcceeecCCCCCh
Q psy17695        128 L-FCVQRYAQRLESLYKVMWDRYSQNLPVTHIT---------------------------QAKIAREAEHFLDLSQVPCN  179 (222)
Q Consensus       128 ~-~~~~~~~~rLRIGYvS~~d~~f~~H~v~~l~---------------------------~~~~~~~~~~~~~~~~~~~~  179 (222)
                      + .+-+..++||||||+| +|  |++|+||+++                           +.||+..+++|+++.+|+| 
T Consensus       249 ~~~~~~~~~~rlRvGylS-~d--lr~Havg~l~~~v~e~hDRdkfEvfay~~g~~~~dal~~rI~a~~~~~~~~~~~dd-  324 (620)
T COG3914         249 RDENIKRNGKRLRVGYLS-SD--LRSHAVGFLLRWVFEYHDRDKFEVFAYSLGPPHTDALQERISAAVEKWYPIGRMDD-  324 (620)
T ss_pred             chhhccccccceeEEEec-cc--cccchHHHHHHHHHHHhchhheEEEEEecCCCCchhHHHHHHHhhhheeccCCcCH-
Confidence            1 1123458899999999 99  9999999999                           6899999999999999998 


Q ss_pred             HHHHHHHHhCCCcEEEeCCCCCCCcchhhhhhCCchhhhcccC
Q psy17695        180 GKAADRIHKDGIHILVNMNGYTKGARNEIFALRPAPIQSSFTA  222 (222)
Q Consensus       180 ~~~a~~i~~d~iDILvDL~G~t~~~r~~i~a~rpAPvQv~~lG  222 (222)
                      .++|++|+.|||||||||+|||..+|++|||+|||||||||||
T Consensus       325 ~e~a~~I~~d~IdILvDl~g~T~d~r~~v~A~RpAPiqvswlG  367 (620)
T COG3914         325 AEIANAIRTDGIDILVDLDGHTVDTRCQVFAHRPAPIQVSWLG  367 (620)
T ss_pred             HHHHHHHHhcCCeEEEeccCceeccchhhhhcCCCceEEeecc
Confidence            8999999999999999999999999999999999999999998

>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A

Probab=99.97  E-value=1.4e-31  Score=234.38  Aligned_cols=82  Identities=49%  Similarity=0.736  Sum_probs=74.4

Q ss_pred             cceeeEeeccccccCCCchhhH---------------------------HHHHHhhhcceeecCCCCChHHHHHHHHhCC
Q psy17695        138 LESLYKVMWDRYSQNLPVTHIT---------------------------QAKIAREAEHFLDLSQVPCNGKAADRIHKDG  190 (222)
Q Consensus       138 LRIGYvS~~d~~f~~H~v~~l~---------------------------~~~~~~~~~~~~~~~~~~~~~~~a~~i~~d~  190 (222)
                      ||||||| +|  |++|||++|+                           |+++++.+++|+++++++++.++|++|++|+
T Consensus         1 LRIGyvS-~D--f~~Hpv~~l~~~ll~~hDr~rfev~~Ys~~~~d~~~~~~~~~~~~~~~~dl~~~~~~~~~A~~Ir~D~   77 (468)
T PF13844_consen    1 LRIGYVS-SD--FRNHPVGHLLQPLLENHDRSRFEVFCYSLGPDDGDTFRQRIRAEADHFVDLSGLSDDAEAAQRIRADG   77 (468)
T ss_dssp             EEEEEEE-S---SSSSHHHHHHHHHHHHHHHHTEEEEEEESS---SCHHHHHHHHHSEEEEEEEE-TTSHHHHHHHHHTT
T ss_pred             CEEEEEC-Cc--chhCHHHHHHHHHHHhcCcccEEEEEEECCCCCCcHHHHHHHHhCCeEEECccCCcHHHHHHHHHHCC
Confidence            7999999 99  9999999999                           6889999999999999873279999999999


Q ss_pred             CcEEEeCCCCCCCcchhhhhhCCchhhhcccC
Q psy17695        191 IHILVNMNGYTKGARNEIFALRPAPIQSSFTA  222 (222)
Q Consensus       191 iDILvDL~G~t~~~r~~i~a~rpAPvQv~~lG  222 (222)
                      |||||||+|||.|+|++|||+|||||||+|||
T Consensus        78 IDILVDL~GhT~~~R~~ifA~RpAPVQvswlG  109 (468)
T PF13844_consen   78 IDILVDLSGHTAGNRLEIFALRPAPVQVSWLG  109 (468)
T ss_dssp             -SEEEESSTSSTSSSHHHHHT-SSSEEEEESS
T ss_pred             CCEEEeCCCcCCCCHhHHHhcCCcceEEEecC
Confidence            99999999999999999999999999999998

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.36  E-value=2.5e-12  Score=84.83  Aligned_cols=68  Identities=19%  Similarity=0.268  Sum_probs=64.9

Q ss_pred             CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHH
Q psy17695          6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVC-DWTDYEARMKKLVSIVA   73 (222)
Q Consensus         6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~   73 (222)
                      +++..|..+|.++...|++++|+.+|+++++++|+++.+++++|.++..+| ++++|.+.+++++++.|
T Consensus         1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            478999999999999999999999999999999999999999999999999 79999999999998765

...

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.27  E-value=1.3e-11  Score=93.63  Aligned_cols=73  Identities=15%  Similarity=0.200  Sum_probs=68.8

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..+|+++.+|+++|.++..+|++++|+.+|+++++++|+++.+++++|.++..+|++++|.+.|++++++.|+
T Consensus        52 ~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~  124 (144)
T PRK15359         52 MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA  124 (144)
T ss_pred             HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            5789999999999999999999999999999999999999999999999999999999999999999988876

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.22  E-value=3.5e-11  Score=91.33  Aligned_cols=72  Identities=19%  Similarity=0.129  Sum_probs=68.4

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      ..+|.++..|++||.++..+|++++|+.+|.+|+.++|+++.+++|+|.|+...|+.+.|.+.|+.++....
T Consensus        63 ~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363         63 IYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             HhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence            468999999999999999999999999999999999999999999999999999999999999999998774

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=99.14  E-value=1.9e-10  Score=100.34  Aligned_cols=69  Identities=20%  Similarity=0.219  Sum_probs=66.4

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDA---YCNLAHCLQIVCDWTDYEARMKKLVSI   71 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a---~~~l~~~~~~~~~~~~a~~~~~~~~~~   71 (222)
                      .+|+++++|+|+|.+|..+|++++|+.+|++|++++|++.++   |+|+|.+|..+|+.++|++++++++++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            479999999999999999999999999999999999999965   999999999999999999999999986

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.07  E-value=3.6e-10  Score=73.54  Aligned_cols=63  Identities=22%  Similarity=0.320  Sum_probs=59.3

Q ss_pred             HHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695         12 LFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus        12 ~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +.+|..+.+.|++++|+.+|+++++.+|+++.+++.+|.++..+|++++|...|+++++..|+
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~   63 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD   63 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            468999999999999999999999999999999999999999999999999999999988875

>KOG4626|consensus

Probab=99.05  E-value=4.8e-10  Score=100.26  Aligned_cols=75  Identities=21%  Similarity=0.276  Sum_probs=63.8

Q ss_pred             CCCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      |..+|+++++++|||+++.+.|+..||++||.+||.+.|+++++.+|||++++++|..++|...|.++++..|+.
T Consensus       313 l~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~  387 (966)
T KOG4626|consen  313 LELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEF  387 (966)
T ss_pred             HhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhh
Confidence            456788888888888888888888888888888888888888888888888888888888888888888877763

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.01  E-value=1.1e-09  Score=92.48  Aligned_cols=73  Identities=15%  Similarity=0.174  Sum_probs=61.2

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .++|+++.+|+++|.++..+|++++|+.+|+++++++|++..++.++|.++...|++++|.+.++++++..|+
T Consensus        92 ~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~  164 (296)
T PRK11189         92 ALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN  164 (296)
T ss_pred             HcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            4678888888888888888888888888888888888888888888888888888888888888888877664

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.96  E-value=1.6e-09  Score=86.46  Aligned_cols=75  Identities=17%  Similarity=0.217  Sum_probs=68.9

Q ss_pred             CCCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHHHHhh
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCL-QIVCD--WTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~~~~   75 (222)
                      |..+|+++++|..||.++...|++++|+.+|++|++++|+++..+.++|.++ ...|+  .++|.+.++++++..|+.
T Consensus        66 L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~  143 (198)
T PRK10370         66 IRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANE  143 (198)
T ss_pred             HHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC
Confidence            3568999999999999999999999999999999999999999999999986 66677  499999999999998873

>KOG0553|consensus

Probab=98.94  E-value=1.2e-09  Score=90.26  Aligned_cols=74  Identities=16%  Similarity=0.280  Sum_probs=71.5

Q ss_pred             CCCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      |.++|.++..|.|.+.+|.++|.++.|++..++||++||.+..+|..||.++..+|++++|++.|++++.+.|+
T Consensus       108 I~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~  181 (304)
T KOG0553|consen  108 IELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPD  181 (304)
T ss_pred             HhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999998886

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.91  E-value=3.9e-09  Score=79.97  Aligned_cols=79  Identities=14%  Similarity=0.012  Sum_probs=69.1

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCcc
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRLPSVHPH   87 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~l~~~~~~~~~p~   87 (222)
                      |..+.++|.++...|++++|+.+|++++.++|++..++.++|.++...|++++|+..|++++.+.|+.        ...+
T Consensus        24 p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~--------~~a~   95 (144)
T PRK15359         24 PETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASH--------PEPV   95 (144)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC--------cHHH
Confidence            44577899999999999999999999999999999999999999999999999999999999888763        3445


Q ss_pred             ccccccC
Q psy17695         88 HSMLYPL   94 (222)
Q Consensus        88 ~~l~~~~   94 (222)
                      .+++..+
T Consensus        96 ~~lg~~l  102 (144)
T PRK15359         96 YQTGVCL  102 (144)
T ss_pred             HHHHHHH
Confidence            5555544

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.87  E-value=5.7e-09  Score=77.43  Aligned_cols=71  Identities=13%  Similarity=0.116  Sum_probs=39.9

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      .+|++..+...+|.++...|++++|+..|+++++++|+++.++.++|.++...|++++|...+++++...|
T Consensus        12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p   82 (135)
T TIGR02552        12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP   82 (135)
T ss_pred             CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            44555555555555555555555555555555555555555555555555555555555555555554444

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.87  E-value=7.1e-09  Score=89.89  Aligned_cols=74  Identities=18%  Similarity=0.166  Sum_probs=70.8

Q ss_pred             CCCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      |..+|+++.+++++|.+|..+|++++|+..+++|++++|+++.+++++|.++..+|++++|...|++++.+.|+
T Consensus        29 l~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~  102 (356)
T PLN03088         29 IDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPG  102 (356)
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence            35789999999999999999999999999999999999999999999999999999999999999999988875

>PRK12370 invasion protein regulator; Provisional

Probab=98.85  E-value=8.3e-09  Score=94.43  Aligned_cols=74  Identities=7%  Similarity=-0.091  Sum_probs=71.3

Q ss_pred             CCCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +.++|+++.+|..+|.++...|++++|+.+|++|++++|+++.+++++|.++...|++++|...+++++++.|.
T Consensus       331 l~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~  404 (553)
T PRK12370        331 TELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT  404 (553)
T ss_pred             HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            45799999999999999999999999999999999999999999999999999999999999999999998886

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.81  E-value=1.8e-08  Score=80.34  Aligned_cols=73  Identities=14%  Similarity=0.034  Sum_probs=67.9

Q ss_pred             CCCCCCHHHHHHHHHhc-ccCCC--cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSF-PSPGN--IPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l-~~~g~--~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .++|+++..+.++|.++ ...|+  .++|++.++++++++|+++.+++++|..+...|++++|+..++++++..|.
T Consensus       101 ~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~  176 (198)
T PRK10370        101 QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP  176 (198)
T ss_pred             HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            57899999999999975 67787  599999999999999999999999999999999999999999999988774

>KOG1125|consensus

Probab=98.77  E-value=9.1e-09  Score=91.26  Aligned_cols=74  Identities=16%  Similarity=0.178  Sum_probs=67.3

Q ss_pred             CCCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      |..+|++...|+.||.+|..-.+.+||+.+|++|++|.|+++.+++|||.+++.+|.+++|...+-.++.+.++
T Consensus       457 L~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  457 LQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             HhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            45689999999999999999999999999999999999999999999999999999999999999888888876

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.76  E-value=8.5e-09  Score=69.43  Aligned_cols=69  Identities=22%  Similarity=0.313  Sum_probs=59.7

Q ss_pred             CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695          5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLK-------PDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~-------P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      |+-+.+++++|.+|..+|++++|+++|++++++.       |..+.++.++|.++...|++++|++.+++++++..
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~   77 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE   77 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence            4567889999999999999999999999999772       22356799999999999999999999999998764

...

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.76  E-value=1.4e-08  Score=77.17  Aligned_cols=70  Identities=10%  Similarity=0.028  Sum_probs=67.3

Q ss_pred             CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ++.-+..+.+|..+...|++++|+..|+....++|.+...|++||.|++.+|+|++|+.+|..+..+.|+
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d  101 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID  101 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            6677899999999999999999999999999999999999999999999999999999999999998886

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.75  E-value=1.9e-08  Score=80.44  Aligned_cols=100  Identities=15%  Similarity=0.088  Sum_probs=73.9

Q ss_pred             CCCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCC
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNR   80 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~l~~~~   80 (222)
                      |..+|++..+|..++.+|..+|..+-|.+.|++|++++|++.+.++|.|..+..+|.+++|...|++++. .|..     
T Consensus        62 L~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y-----  135 (250)
T COG3063          62 LEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAY-----  135 (250)
T ss_pred             HHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHh-CCCC-----
Confidence            4568888899999999999999999999999999999999999999999888888888888888887762 2221     


Q ss_pred             CCCCCccccccccCCHHHHHHHHHHH
Q psy17695         81 LPSVHPHHSMLYPLTHEYRKAIAARH  106 (222)
Q Consensus        81 ~~~~~p~~~l~~~~~~~~~~~~a~~~  106 (222)
                      .....+|.|++++..-..+...++.+
T Consensus       136 ~~~s~t~eN~G~Cal~~gq~~~A~~~  161 (250)
T COG3063         136 GEPSDTLENLGLCALKAGQFDQAEEY  161 (250)
T ss_pred             CCcchhhhhhHHHHhhcCCchhHHHH
Confidence            11134566777765543333444444

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.70  E-value=2.4e-08  Score=59.90  Aligned_cols=43  Identities=33%  Similarity=0.400  Sum_probs=40.9

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAH   50 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~   50 (222)
                      |.+|..+|.+|..+|++++|+++|+++++.+|+++.+|..|+.
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            4689999999999999999999999999999999999999985

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.70  E-value=4.1e-08  Score=65.07  Aligned_cols=61  Identities=18%  Similarity=0.368  Sum_probs=57.6

Q ss_pred             HHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695         14 SNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus        14 lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      |..+|...+++++|+.+++++++++|+++..+..+|.++..+|++++|.+.++++++..|+
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~   61 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD   61 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence            4578899999999999999999999999999999999999999999999999999988775

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.69  E-value=6.5e-08  Score=81.82  Aligned_cols=70  Identities=19%  Similarity=0.153  Sum_probs=66.6

Q ss_pred             CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      ..+..|+++|.++...|++++|+..|+++++++|+++.+++++|.++...|++++|.+.|++++++.|+.
T Consensus        62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~  131 (296)
T PRK11189         62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTY  131 (296)
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            3488999999999999999999999999999999999999999999999999999999999999988863

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.69  E-value=5.7e-08  Score=71.99  Aligned_cols=73  Identities=23%  Similarity=0.255  Sum_probs=69.8

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..+|+++.+|.++|.++..+|++++|+..|+++++++|+++..++++|.++...|++++|...++++++..|+
T Consensus        45 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  117 (135)
T TIGR02552        45 AYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGE  117 (135)
T ss_pred             HhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            3589999999999999999999999999999999999999999999999999999999999999999988875

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.68  E-value=5e-08  Score=94.20  Aligned_cols=73  Identities=16%  Similarity=0.050  Sum_probs=57.5

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .++|+++.+++++|.++...|++++|+++|++|++++|+++.++.++|.++...|++++|+..+++++++.|+
T Consensus       637 ~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~  709 (987)
T PRK09782        637 ELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN  709 (987)
T ss_pred             HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            4577888888888888888888888888888888888888888888888888888888888888777776664

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.60  E-value=1.2e-07  Score=76.98  Aligned_cols=84  Identities=15%  Similarity=0.166  Sum_probs=72.7

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRLP   82 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~l~~~~~~   82 (222)
                      .+|.+.+.+..+|..+...|++.+|+..++++.+++|+++++|+.+|.+|.+.|+.++|...|.+++++.++.       
T Consensus        95 ~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~-------  167 (257)
T COG5010          95 AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNE-------  167 (257)
T ss_pred             cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCC-------
Confidence            3577888888899999999999999999999999999999999999999999999999999999999998862       


Q ss_pred             CCCccccccccC
Q psy17695         83 SVHPHHSMLYPL   94 (222)
Q Consensus        83 ~~~p~~~l~~~~   94 (222)
                       ..+..|+.+.+
T Consensus       168 -p~~~nNlgms~  178 (257)
T COG5010         168 -PSIANNLGMSL  178 (257)
T ss_pred             -chhhhhHHHHH
Confidence             34566666543

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.59  E-value=1.8e-07  Score=87.34  Aligned_cols=70  Identities=14%  Similarity=0.145  Sum_probs=54.7

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSI   71 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~   71 (222)
                      ..+|+++.+++.+|.++.++|++++|+++|+++++-+|+++.++.++|++++..|+.++|...|++++..
T Consensus       148 ~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~  217 (694)
T PRK15179        148 SGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA  217 (694)
T ss_pred             hcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4577788888888888888888888888888888777777888888888888888888887777777654

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.58  E-value=2.2e-07  Score=75.52  Aligned_cols=69  Identities=25%  Similarity=0.236  Sum_probs=65.5

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVS   70 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~   70 (222)
                      .++|+++++|+.+|.+|.+.|++++|...|.+|+++.|+++....|+|..+.-.|+.+.|+..+..+..
T Consensus       128 ~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l  196 (257)
T COG5010         128 RLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL  196 (257)
T ss_pred             ccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence            578999999999999999999999999999999999999999999999999999999999998877654

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.57  E-value=7.6e-08  Score=62.86  Aligned_cols=57  Identities=26%  Similarity=0.404  Sum_probs=50.9

Q ss_pred             cccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695         18 FPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus        18 l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +.+.|++++|+..|+++++.+|++..++..++.++...|++++|...++++....|+
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~   57 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD   57 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            357899999999999999999999999999999999999999999988887766654

...

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.55  E-value=7.4e-08  Score=54.50  Aligned_cols=33  Identities=30%  Similarity=0.491  Sum_probs=31.3

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy17695         30 SYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYE   62 (222)
Q Consensus        30 ~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~   62 (222)
                      +|++||+++|+++.+|++||.++...|++++|+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            589999999999999999999999999999886

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.54  E-value=1.5e-07  Score=91.00  Aligned_cols=73  Identities=16%  Similarity=0.216  Sum_probs=69.3

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      ..+|+ +.++.++|.++.++|++++|+.+|+++++++|+++.++.++|.++...|++++|++.++++++..|+.
T Consensus       604 ~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~  676 (987)
T PRK09782        604 NIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDD  676 (987)
T ss_pred             HhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            46786 99999999999999999999999999999999999999999999999999999999999999988864

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.53  E-value=2.1e-07  Score=62.41  Aligned_cols=64  Identities=27%  Similarity=0.389  Sum_probs=40.3

Q ss_pred             HHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695         10 GILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus        10 ~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      +++++|.++...|++++|+..++++++..|++..++..+|.++...+++++|...+++++...+
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~   65 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP   65 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            3556666666666666666666666666666666666666666666666666666666555443

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=98.52  E-value=2.9e-07  Score=85.25  Aligned_cols=72  Identities=19%  Similarity=0.225  Sum_probs=48.8

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ++|+++.+|.++|.++..+|++++|+..|+++++++|+++.+++++|.++...|++++|..+|++++.+.|+
T Consensus       360 l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~  431 (615)
T TIGR00990       360 LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD  431 (615)
T ss_pred             cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc
Confidence            466666666666666666666666666666666666666666666666666666666666666666665554

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=98.51  E-value=3e-07  Score=85.21  Aligned_cols=73  Identities=14%  Similarity=0.033  Sum_probs=63.3

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..+|+++.+++++|.++..+|++++|+.+|+++++++|++..++.++|.++..+|++++|...+++++...|+
T Consensus       393 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~  465 (615)
T TIGR00990       393 KLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE  465 (615)
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            4578888899999999999999999999999999999998888888998888888888888888888876664

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.51  E-value=1.3e-07  Score=53.26  Aligned_cols=34  Identities=26%  Similarity=0.398  Sum_probs=31.1

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF   41 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~   41 (222)
                      +.+|+++|.++..+|++++|+.+|++|++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            5789999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1126|consensus

Probab=98.50  E-value=6e-08  Score=87.28  Aligned_cols=74  Identities=18%  Similarity=0.232  Sum_probs=69.3

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      .-+|+.|+.|..+|++|.-+++++.|+++|+||+++||+++.++..+|+-+....+++.|..+|+.++...|++
T Consensus       415 ~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh  488 (638)
T KOG1126|consen  415 DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH  488 (638)
T ss_pred             hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh
Confidence            45799999999999999999999999999999999999999999999999999999999999999999888875

>PRK12370 invasion protein regulator; Provisional

Probab=98.49  E-value=2.8e-07  Score=84.43  Aligned_cols=75  Identities=13%  Similarity=0.002  Sum_probs=68.2

Q ss_pred             CCCCCCCHHHHHHHHHhcccC---------CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy17695          1 MMKTPFFKVGILFSNSSFPSP---------GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSI   71 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~---------g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~   71 (222)
                      +.++|+++.+|.++|.++..+         +++++|+.++++|++++|+++.++..+|.++...|++++|++.+++++++
T Consensus       288 l~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l  367 (553)
T PRK12370        288 VNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL  367 (553)
T ss_pred             HhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            467999999999999877633         45899999999999999999999999999999999999999999999999


Q ss_pred             HHhh
Q psy17695         72 VAEQ   75 (222)
Q Consensus        72 ~~~~   75 (222)
                      .|+.
T Consensus       368 ~P~~  371 (553)
T PRK12370        368 SPIS  371 (553)
T ss_pred             CCCC
Confidence            8863

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.48  E-value=6.7e-07  Score=64.20  Aligned_cols=66  Identities=18%  Similarity=0.288  Sum_probs=34.9

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF---PDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~---~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      +.+++.+|.++...|++++|+..|+++++..|++   +.++.++|.++...+++++|...+++++...|
T Consensus        39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p  107 (119)
T TIGR02795        39 PNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYP  107 (119)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCc
Confidence            3455555555555555555555555555555543   34455555555555555555555555554444

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.47  E-value=5.2e-07  Score=84.26  Aligned_cols=73  Identities=16%  Similarity=0.126  Sum_probs=48.9

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..+|+++.++.++|.++..+|++++|+..|+++++++|+++.++.+++.++...|++++|.+.+++++...|+
T Consensus       278 ~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~  350 (656)
T PRK15174        278 QFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV  350 (656)
T ss_pred             hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            3456666667777777777777777777777777777777666666666666666776666666666655443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.46  E-value=3.9e-07  Score=85.12  Aligned_cols=73  Identities=8%  Similarity=-0.033  Sum_probs=65.3

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ...|++..++.+++.++.++++++||+.+++++++.+|+++.+++++|.++.++|++++|++.|++++...|+
T Consensus       114 ~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~  186 (694)
T PRK15179        114 QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPE  186 (694)
T ss_pred             hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC
Confidence            4679999999999999999999999999999999999999999999999999999999999999999875543

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.44  E-value=1.4e-06  Score=67.33  Aligned_cols=67  Identities=18%  Similarity=0.070  Sum_probs=47.7

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF---PDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~---~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +..++++|.++...|++++|+..|++++++.|+.   +.++.++|.++...|++++|...+++++++.|.
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~  104 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF  104 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            5666777777777777777777777777776653   346777777777777777777777777766554

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.43  E-value=4.4e-07  Score=72.70  Aligned_cols=75  Identities=17%  Similarity=0.147  Sum_probs=68.7

Q ss_pred             CCCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      |+++|++.++++|.|..|..+|++++|.+.|++|+..  =|..+.++-|+|.|..+.|+.+.|++.++++++..|+.
T Consensus        96 lsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~  172 (250)
T COG3063          96 LSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF  172 (250)
T ss_pred             HhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC
Confidence            5689999999999999999999999999999999983  24456899999999999999999999999999998874

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.43  E-value=3.8e-07  Score=51.09  Aligned_cols=34  Identities=26%  Similarity=0.436  Sum_probs=31.3

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF   41 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~   41 (222)
                      |++|+.+|.++..+|++++|+.+|+++++++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            5789999999999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=6.1e-07  Score=74.52  Aligned_cols=74  Identities=20%  Similarity=0.279  Sum_probs=66.9

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCD---WTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~   75 (222)
                      ..||++++.|..||.+|..+|+++.|..+|++|+++.|++++.+..++.++....+   -.++...++++++..|..
T Consensus       150 ~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~  226 (287)
T COG4235         150 QQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPAN  226 (287)
T ss_pred             HhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCcc
Confidence            46999999999999999999999999999999999999999999999999887654   566788888888887764

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.41  E-value=1.2e-06  Score=69.37  Aligned_cols=66  Identities=20%  Similarity=0.240  Sum_probs=36.8

Q ss_pred             CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17695          4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLV   69 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~   69 (222)
                      +|++..++..+|.++..+|++++|+..|+++++++|++..++.+++.++...|++++|...+++++
T Consensus        61 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~  126 (234)
T TIGR02521        61 DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAI  126 (234)
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            455555555555555555555555555555555555555555555555555555555555555544

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.41  E-value=2.4e-07  Score=63.36  Aligned_cols=61  Identities=25%  Similarity=0.317  Sum_probs=55.5

Q ss_pred             CHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17695          7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKL   68 (222)
Q Consensus         7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~   68 (222)
                      +...++.+|.++.++|++++|+..+++ ++.+|.+...++.+|.|+..+|+|++|+..++++
T Consensus        24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            577888999999999999999999999 9999999999999999999999999999988764

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.41  E-value=1e-06  Score=68.45  Aligned_cols=72  Identities=17%  Similarity=0.116  Sum_probs=65.3

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF---PDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~---~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+|..+.+++++|..+...|++++|+.+|++++++.|+.   ..++.++|.++...|++++|...+++++...|+
T Consensus        30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  104 (172)
T PRK02603         30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK  104 (172)
T ss_pred             cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            345778899999999999999999999999999998774   468999999999999999999999999988775

>KOG1126|consensus

Probab=98.37  E-value=5.3e-07  Score=81.33  Aligned_cols=74  Identities=8%  Similarity=0.066  Sum_probs=66.4

Q ss_pred             CCCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      |..+|++-.||+.||.+|.++++++.|+-.|++|++++|.+....+.+|.++.+.|+.++|...+++++.+.|.
T Consensus       482 l~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k  555 (638)
T KOG1126|consen  482 LGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK  555 (638)
T ss_pred             hcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC
Confidence            45688899999999999999999999999999999999999999999999999999999999999999888775

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.36  E-value=1.4e-06  Score=81.42  Aligned_cols=73  Identities=12%  Similarity=0.003  Sum_probs=69.2

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPE----AIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~e----A~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..+|+++.+++++|.++..+|++++    |+..|+++++++|+++.++.++|.++...|++++|...+++++++.|+
T Consensus       240 ~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~  316 (656)
T PRK15174        240 ARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD  316 (656)
T ss_pred             hcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            4679999999999999999999996    899999999999999999999999999999999999999999988775

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.33  E-value=5.4e-07  Score=58.34  Aligned_cols=41  Identities=27%  Similarity=0.348  Sum_probs=37.4

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCH
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFP   42 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~   42 (222)
                      ..+|+++.+|+.+|.++..+|++++|+..|+++++++|+++
T Consensus        25 ~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen   25 KQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             CCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            57899999999999999999999999999999999999985

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.32  E-value=1.6e-06  Score=57.98  Aligned_cols=72  Identities=21%  Similarity=0.260  Sum_probs=66.0

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      ...|.+..++..+|.++...|++++|+.+|++++++.|.+..++..++.++...+++++|...+.+++...|
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          28 ELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP   99 (100)
T ss_pred             hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence            457888899999999999999999999999999999999999999999999999999999998888775443

>KOG1125|consensus

Probab=98.32  E-value=9.4e-07  Score=78.72  Aligned_cols=70  Identities=11%  Similarity=0.042  Sum_probs=67.8

Q ss_pred             CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      .+++.+..||++|...|+|+.|++||+.||..+|++...|+.||..+..-.+.++|+..|++++.+.|..
T Consensus       428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y  497 (579)
T KOG1125|consen  428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY  497 (579)
T ss_pred             CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe
Confidence            7899999999999999999999999999999999999999999999999999999999999999999975

>KOG4162|consensus

Probab=98.31  E-value=2.1e-06  Score=78.71  Aligned_cols=83  Identities=14%  Similarity=0.141  Sum_probs=74.9

Q ss_pred             CCCCCCCHHHHHHHHHhcccCCCcHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhc
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPGNIPEAIQ--SYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDK   78 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g~~~eA~~--~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~l~~   78 (222)
                      +.+||+++.....+|.+|.+.|+-.-|..  .+..|++++|.++++|+++|.+++..|+.++|.++|+.++++.+..   
T Consensus       711 l~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~---  787 (799)
T KOG4162|consen  711 LALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN---  787 (799)
T ss_pred             HhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC---
Confidence            45799999999999999999999888888  9999999999999999999999999999999999999999887752   


Q ss_pred             CCCCCCCccccc
Q psy17695         79 NRLPSVHPHHSM   90 (222)
Q Consensus        79 ~~~~~~~p~~~l   90 (222)
                          .+.||.++
T Consensus       788 ----PV~pFs~i  795 (799)
T KOG4162|consen  788 ----PVLPFSNI  795 (799)
T ss_pred             ----Cccccccc
Confidence                36788664

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.31  E-value=2.3e-06  Score=71.16  Aligned_cols=72  Identities=15%  Similarity=0.085  Sum_probs=54.2

Q ss_pred             CCCCC---HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          3 KTPFF---KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPD---FPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~---~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~---~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..|+.   +.+++.+|.+|...|++++|+..|+++++..|+   .+++++.+|.++..+|++++|...|+++++..|+
T Consensus       172 ~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~  249 (263)
T PRK10803        172 KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPG  249 (263)
T ss_pred             HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            35655   577888888888888888888888888877666   4677777788887888888888888777776665

>PRK15331 chaperone protein SicA; Provisional

Probab=98.29  E-value=1.2e-06  Score=67.09  Aligned_cols=69  Identities=7%  Similarity=-0.038  Sum_probs=55.9

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVS   70 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~   70 (222)
                      +.+|.++..|+.||.++..++++++|+.+|..|..++++++...+..|.|+..+++.+.|..+|..++.
T Consensus        65 ~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331         65 IYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             HhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence            357778888888888888888888888888888888888888888888888888888888887776664

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.28  E-value=4.2e-06  Score=59.95  Aligned_cols=67  Identities=18%  Similarity=0.194  Sum_probs=62.1

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF---PDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~---~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +..++.+|..+...|++++|+..|+++++.+|++   +.+++.+|.++...+++++|...+++++...|+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~   71 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK   71 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC
Confidence            4678999999999999999999999999999987   578999999999999999999999999987765

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.27  E-value=4.1e-06  Score=64.77  Aligned_cols=68  Identities=16%  Similarity=0.080  Sum_probs=58.2

Q ss_pred             CHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+.+|.++|.++...|++++|+.+|+++++++|.+..++.+++.++...|........+++++....+
T Consensus        71 ~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~  138 (168)
T CHL00033         71 RSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ  138 (168)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence            45799999999999999999999999999999999999999999999998765555556666555443

>PRK11906 transcriptional regulator; Provisional

Probab=98.25  E-value=2.9e-06  Score=74.57  Aligned_cols=74  Identities=9%  Similarity=-0.077  Sum_probs=71.2

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      .++|+|+.++..+|.++.-.|+++.|+..|++|+.++|+++.+++..|.++...|+.++|.+.+++++++.|..
T Consensus       332 eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~  405 (458)
T PRK11906        332 DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR  405 (458)
T ss_pred             hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence            57999999999999999999999999999999999999999999999999999999999999999999988864

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.24  E-value=5.2e-06  Score=64.46  Aligned_cols=56  Identities=21%  Similarity=0.238  Sum_probs=50.2

Q ss_pred             CHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy17695          7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYE   62 (222)
Q Consensus         7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~   62 (222)
                      .+.++.++|.++..+|++++|+.+|+++++++|++..++.++|.++...++...+.
T Consensus        71 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~  126 (172)
T PRK02603         71 RSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEA  126 (172)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHh
Confidence            36799999999999999999999999999999999999999999998877643333

>KOG1173|consensus

Probab=98.24  E-value=2.5e-06  Score=75.97  Aligned_cols=70  Identities=14%  Similarity=0.244  Sum_probs=65.7

Q ss_pred             CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      .....+.|||.++++++++++|+.+|+++|.+.|.++.++..+|.++..+|+.+.|.+.|.+++.+.|+.
T Consensus       453 ~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n  522 (611)
T KOG1173|consen  453 FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN  522 (611)
T ss_pred             chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence            3556799999999999999999999999999999999999999999999999999999999999887763

>KOG1155|consensus

Probab=98.23  E-value=3.6e-06  Score=73.57  Aligned_cols=66  Identities=15%  Similarity=0.136  Sum_probs=33.3

Q ss_pred             CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17695          4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLV   69 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~   69 (222)
                      +|.+-.+|+.||++|.-++-..=|+-+|++|+++.|++...|..||.||.++++.++|+.+|..++
T Consensus       394 ~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai  459 (559)
T KOG1155|consen  394 NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAI  459 (559)
T ss_pred             CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            344444444444444444444444444444444444444445555555555666666666665554

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.22  E-value=3.6e-06  Score=80.03  Aligned_cols=73  Identities=14%  Similarity=0.060  Sum_probs=62.2

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ...|+++.++.++|.++...|++++|++.++++++++|++..+++.++.++...++|++|++.++++++..|+
T Consensus       387 ~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd  459 (765)
T PRK10049        387 YNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ  459 (765)
T ss_pred             HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence            3568888888888888888888888888888888888888888888888888888888888888888887765

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.22  E-value=7.9e-06  Score=66.30  Aligned_cols=71  Identities=15%  Similarity=0.160  Sum_probs=66.5

Q ss_pred             CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFP---DAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~---~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ++..+..++.+|..+...|++++|+..|+++++.+|+++   .+++++|.++...++|++|...++++++..|+
T Consensus        29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~  102 (235)
T TIGR03302        29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN  102 (235)
T ss_pred             ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC
Confidence            456789999999999999999999999999999999986   68899999999999999999999999998886

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.19  E-value=2.8e-06  Score=65.83  Aligned_cols=70  Identities=21%  Similarity=0.278  Sum_probs=50.6

Q ss_pred             CCCCCHHHHHHHHHhcccCCC----------cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHH
Q psy17695          3 KTPFFKVGILFSNSSFPSPGN----------IPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVC----DWTDYEARMKKL   68 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~----------~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~----~~~~a~~~~~~~   68 (222)
                      ++|.+++.+++.|.+|..+.+          +++|+.-|+.||.|+|+..++++++|+++...+    +-.+|...|+++
T Consensus        20 ~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA   99 (186)
T PF06552_consen   20 KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA   99 (186)
T ss_dssp             H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred             hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence            589999999999999987744          577899999999999999999999999987643    333444444444


Q ss_pred             HHHH
Q psy17695         69 VSIV   72 (222)
Q Consensus        69 ~~~~   72 (222)
                      ....
T Consensus       100 ~~~F  103 (186)
T PF06552_consen  100 TEYF  103 (186)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.19  E-value=7.9e-06  Score=64.55  Aligned_cols=69  Identities=17%  Similarity=0.144  Sum_probs=64.8

Q ss_pred             CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..+..+.++|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|...+++++...|+
T Consensus        29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~   97 (234)
T TIGR02521        29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN   97 (234)
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            347899999999999999999999999999999999999999999999999999999999999887664

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.19  E-value=7.4e-06  Score=60.01  Aligned_cols=67  Identities=21%  Similarity=0.145  Sum_probs=60.1

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF---PDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~---~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      |.+++++|.++..+|+.++|+..|+++++..++.   ..++..+|.++..+|+.++|...+++.+...|+
T Consensus         1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~   70 (120)
T PF12688_consen    1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD   70 (120)
T ss_pred             CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            4688999999999999999999999999986555   568999999999999999999999998876664

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.19  E-value=4.3e-06  Score=72.59  Aligned_cols=64  Identities=16%  Similarity=0.206  Sum_probs=61.0

Q ss_pred             HHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695         11 ILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus        11 ~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +...|..+...|++++|+.+|++|++++|+++.+++++|.++..+|++++|...+++++.+.|+
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~   68 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPS   68 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            5677899999999999999999999999999999999999999999999999999999998886

>KOG0543|consensus

Probab=98.18  E-value=4.1e-06  Score=72.10  Aligned_cols=67  Identities=16%  Similarity=0.185  Sum_probs=64.4

Q ss_pred             HHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          9 VGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      ..|+||+.++.+++++.+|+....++|+++|+|+.+++..|.++..+++++.|...|++++++.|++
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N  324 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN  324 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc
Confidence            5789999999999999999999999999999999999999999999999999999999999988863

>KOG0553|consensus

Probab=98.18  E-value=2.2e-06  Score=71.12  Aligned_cols=68  Identities=19%  Similarity=0.273  Sum_probs=63.3

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      ++-+-+-|+-+.+.++|.+|+..|.+||+++|.++-.+.|.+.+|.++|.++.|++.++.++.+.|..
T Consensus        81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y  148 (304)
T KOG0553|consen   81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY  148 (304)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH
Confidence            45566778889999999999999999999999999999999999999999999999999999998874

>KOG1155|consensus

Probab=98.17  E-value=3.4e-06  Score=73.71  Aligned_cols=74  Identities=18%  Similarity=0.207  Sum_probs=63.5

Q ss_pred             CCCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      |++||....+|..+|.=|..+.+...|+++|++|++++|.+..+|+.||..|-.++-..=|.-.|+++....|+
T Consensus       357 LkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn  430 (559)
T KOG1155|consen  357 LKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN  430 (559)
T ss_pred             HhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC
Confidence            46788888999999999999999999999999999999999999999998888888777788888888877665

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.14  E-value=8.3e-06  Score=70.02  Aligned_cols=71  Identities=21%  Similarity=0.179  Sum_probs=65.6

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      .+|+...++..+|.++..+|++++|+..++++++++|+++.++..++.++...|++++|++.+++++...+
T Consensus       109 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~  179 (355)
T cd05804         109 ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD  179 (355)
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence            46777888889999999999999999999999999999999999999999999999999999998887655

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.13  E-value=9.3e-06  Score=73.73  Aligned_cols=71  Identities=13%  Similarity=-0.007  Sum_probs=67.0

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+|.++.+|..+|..+...|++++|...|++|++++| +..++..+|.++...|+.++|.+.|+++.++.|.
T Consensus       415 ~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~  485 (517)
T PRK10153        415 ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG  485 (517)
T ss_pred             cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            4778889999999999999999999999999999999 5899999999999999999999999999988885

>KOG0548|consensus

Probab=98.13  E-value=4e-06  Score=74.20  Aligned_cols=73  Identities=15%  Similarity=0.251  Sum_probs=39.9

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +.+|+++.++.|.+.+|.++|.+.+|+...+++++++|++..++..-|.++..+.+|+.|.+.|++++...|+
T Consensus       386 kr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~  458 (539)
T KOG0548|consen  386 KRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS  458 (539)
T ss_pred             hcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence            3455555555555555555555555555555555555555555555555555555555555555555544443

>PLN02789 farnesyltranstransferase

Probab=98.11  E-value=8.1e-06  Score=69.78  Aligned_cols=73  Identities=14%  Similarity=0.051  Sum_probs=56.7

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCc--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNI--PEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~--~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..+|.+..+|++.+.++..+|+.  ++++.+++++++++|++..+|.+++.++..+++|+++.+.+.++++..+.
T Consensus       100 ~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~  174 (320)
T PLN02789        100 EDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR  174 (320)
T ss_pred             HHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC
Confidence            35777888888888777777763  66777778888888888888888888888888888888888888777664

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.11  E-value=5.8e-06  Score=67.06  Aligned_cols=73  Identities=19%  Similarity=0.218  Sum_probs=63.9

Q ss_pred             CCCCCCH---HHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHc--------CCHHHHHHHHHH
Q psy17695          2 MKTPFFK---VGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPD---AYCNLAHCLQIV--------CDWTDYEARMKK   67 (222)
Q Consensus         2 ~~~P~~~---~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~---a~~~l~~~~~~~--------~~~~~a~~~~~~   67 (222)
                      ..+|+++   .+++.+|.++...|++++|+..|+++++..|+++.   +++.+|.++...        +++++|...+++
T Consensus        61 ~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~  140 (235)
T TIGR03302        61 SRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQE  140 (235)
T ss_pred             HhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence            3456655   68899999999999999999999999999998886   799999999876        788899999999


Q ss_pred             HHHHHHh
Q psy17695         68 LVSIVAE   74 (222)
Q Consensus        68 ~~~~~~~   74 (222)
                      ++...|+
T Consensus       141 ~~~~~p~  147 (235)
T TIGR03302       141 LIRRYPN  147 (235)
T ss_pred             HHHHCCC
Confidence            9887775

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.09  E-value=9.7e-06  Score=67.71  Aligned_cols=70  Identities=29%  Similarity=0.365  Sum_probs=60.5

Q ss_pred             CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      |+++..|..+|.++.+.|+.++|+.+|++|++++|+++.++..++.++...|+.+++.+.+.......|.
T Consensus       143 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~  212 (280)
T PF13429_consen  143 PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPD  212 (280)
T ss_dssp             -T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC
Confidence            6789999999999999999999999999999999999999999999999999999988888777776654

>KOG0547|consensus

Probab=98.08  E-value=6.1e-06  Score=72.58  Aligned_cols=73  Identities=15%  Similarity=0.066  Sum_probs=56.9

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+||+++..++..|.++.-++++++|+.-|++|++|+|+++.++..++.++.+++.+++.+..|+++....|+
T Consensus       388 ~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~  460 (606)
T KOG0547|consen  388 DLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN  460 (606)
T ss_pred             hcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            3677788888888888888888888888888888888888888888877777777777777777777776665

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.07  E-value=1.1e-05  Score=76.64  Aligned_cols=72  Identities=14%  Similarity=0.007  Sum_probs=57.2

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..+|+++.++..+|.++...|++++|+..++++++.+|+++. +..++.++...|+.++|+..++++++..|+
T Consensus        77 ~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~  148 (765)
T PRK10049         77 SLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ  148 (765)
T ss_pred             HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            456778888888888888888888888888888888888888 888888888888888888888888777665

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.06  E-value=8.2e-06  Score=80.90  Aligned_cols=71  Identities=20%  Similarity=0.116  Sum_probs=64.0

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      .+|+++..+.++|.++.+.|++++|+.+|+++++++|+++.++.+++.++...|++++|++.+++++...|
T Consensus       598 ~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p  668 (1157)
T PRK11447        598 QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN  668 (1157)
T ss_pred             hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence            46888899999999999999999999999999999999999999999999999999999999988776544

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.05  E-value=1.7e-06  Score=56.55  Aligned_cols=38  Identities=26%  Similarity=0.322  Sum_probs=36.2

Q ss_pred             CCCCCCHHHHHHHHHhcccCC-CcHHHHHHHHHHHHhCC
Q psy17695          2 MKTPFFKVGILFSNSSFPSPG-NIPEAIQSYRTALKLKP   39 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g-~~~eA~~~~~~Al~l~P   39 (222)
                      ..+|+++.+|+++|.++..+| ++++|+.+|+++++++|
T Consensus        31 ~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen   31 ELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            468999999999999999999 79999999999999998

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.05  E-value=7e-06  Score=54.14  Aligned_cols=49  Identities=29%  Similarity=0.223  Sum_probs=44.8

Q ss_pred             CCCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLA   49 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~   49 (222)
                      +..+|+++..|..+|.++..+|++++|+..|+++++++|+++.+...+.
T Consensus        22 l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a   70 (73)
T PF13371_consen   22 LELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA   70 (73)
T ss_pred             HHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            3578999999999999999999999999999999999999998876554

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.02  E-value=1.7e-05  Score=74.87  Aligned_cols=72  Identities=24%  Similarity=0.196  Sum_probs=59.3

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..+|+++.++.++|.++...|+ ++|+..+++++++.|+++..+.++|.++...|++++|...++++++..|.
T Consensus       798 ~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~  869 (899)
T TIGR02917       798 KKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE  869 (899)
T ss_pred             HhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            3568888888888888888888 77888888888888888888888888888888888888888888877664

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG0547|consensus

Probab=97.99  E-value=1.3e-05  Score=70.58  Aligned_cols=68  Identities=25%  Similarity=0.383  Sum_probs=64.1

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      +..+-+.|+-+...|+|++||++|..|+++.|+.+..+.|++.||-.+|+|++..+...+++++.|+.
T Consensus       115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y  182 (606)
T KOG0547|consen  115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDY  182 (606)
T ss_pred             HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHH
Confidence            56677899999999999999999999999999999999999999999999999999999999988864

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.98  E-value=8.3e-06  Score=45.59  Aligned_cols=34  Identities=24%  Similarity=0.363  Sum_probs=30.3

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF   41 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~   41 (222)
                      +++|+.+|.++..+|++++|+.+|+++++++|++
T Consensus         1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            4689999999999999999999999999999964

...

>PLN02789 farnesyltranstransferase

Probab=97.97  E-value=1.9e-05  Score=67.46  Aligned_cols=74  Identities=4%  Similarity=-0.114  Sum_probs=63.9

Q ss_pred             CCCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHHHH
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIV---CDW----TDYEARMKKLVSIVA   73 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~---~~~----~~a~~~~~~~~~~~~   73 (222)
                      +..+|.|..+|.+.|.++..+|++++|++++.++|+++|++..+|++++.++...   +..    ++..++..+++...|
T Consensus       135 l~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P  214 (320)
T PLN02789        135 LSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANP  214 (320)
T ss_pred             HHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCC
Confidence            3578999999999999999999999999999999999999999999999998776   333    345666667777777


Q ss_pred             h
Q psy17695         74 E   74 (222)
Q Consensus        74 ~   74 (222)
                      +
T Consensus       215 ~  215 (320)
T PLN02789        215 R  215 (320)
T ss_pred             C
Confidence            6

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=97.97  E-value=3.8e-06  Score=70.18  Aligned_cols=73  Identities=18%  Similarity=0.126  Sum_probs=51.8

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..+|+++.++..++.++.+.|+.+++...++...+..|+++..+..+|.++..+|+.++|...++++.+..|+
T Consensus       174 ~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~  246 (280)
T PF13429_consen  174 ELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD  246 (280)
T ss_dssp             HH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred             HcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence            3567777777777777777777777777777777777777777777777777777777777777777776664

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=97.95  E-value=2.2e-05  Score=77.88  Aligned_cols=73  Identities=11%  Similarity=-0.005  Sum_probs=68.7

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..+|+++.++.++|.+|...|++++|++.|+++++.+|+++.++..++.++...|++++|.+.+++++...++
T Consensus       631 ~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~  703 (1157)
T PRK11447        631 TREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKS  703 (1157)
T ss_pred             HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCcc
Confidence            4689999999999999999999999999999999999999999999999999999999999999999876553

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.94  E-value=2.6e-05  Score=74.33  Aligned_cols=68  Identities=13%  Similarity=0.049  Sum_probs=63.4

Q ss_pred             CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy17695          4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIV   72 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~   72 (222)
                      .+++-.+++.||.+|.++|+.++|.+.|+++++++|+++.++.|+|..+... +.++|++++.+++...
T Consensus       112 ~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~  179 (906)
T PRK14720        112 YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF  179 (906)
T ss_pred             hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence            3566689999999999999999999999999999999999999999999999 9999999999998754

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=97.93  E-value=3.8e-05  Score=67.65  Aligned_cols=72  Identities=21%  Similarity=0.152  Sum_probs=63.8

Q ss_pred             CCCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      ++..|+++..+..+|.++...|++++|..+|+++++++|++.. +..++.++...|+.++|..+|++.+.+..
T Consensus       321 lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~~~  392 (398)
T PRK10747        321 IKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLMLTL  392 (398)
T ss_pred             HhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence            3578999999999999999999999999999999999999655 56799999999999999999999887654

>TIGR00540 hemY_coli hemY protein

Probab=97.91  E-value=4e-05  Score=67.66  Aligned_cols=70  Identities=14%  Similarity=0.045  Sum_probs=57.7

Q ss_pred             CCCCCCH--HHHHHHHHhcccCCCcHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy17695          2 MKTPFFK--VGILFSNSSFPSPGNIPEAIQSYR--TALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIV   72 (222)
Q Consensus         2 ~~~P~~~--~~~~~lg~~l~~~g~~~eA~~~~~--~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~   72 (222)
                      +.+|+++  ..+..+|.++.+.|++++|.++|+  ++++.+|++.. +..+|.++...|+.++|.+.|++++...
T Consensus       327 k~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~~  400 (409)
T TIGR00540       327 KNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGLM  400 (409)
T ss_pred             HhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            5678888  888889999999999999999998  57778888766 4488888899999999988888876543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=97.91  E-value=3.5e-05  Score=72.73  Aligned_cols=72  Identities=18%  Similarity=0.292  Sum_probs=61.5

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..|.++..|..+|.++...|++++|+.+|+++++.+|+++.++..++.++...|++++|...+++++...|+
T Consensus       596 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  667 (899)
T TIGR02917       596 AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPD  667 (899)
T ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            467888888888888888888888888888888888888888888888888888888888888888776654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=97.88  E-value=4.3e-05  Score=66.36  Aligned_cols=66  Identities=14%  Similarity=0.027  Sum_probs=52.6

Q ss_pred             HHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          9 VGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..+.++|.++.+.|++++|+..|+++++.+|++..++..+|.++...|++++|.+.++++....|.
T Consensus       181 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  246 (389)
T PRK11788        181 HFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPE  246 (389)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh
Confidence            356678888888888888888888888888888888888888888888888888888887765543

>KOG0548|consensus

Probab=97.86  E-value=4.3e-05  Score=67.81  Aligned_cols=73  Identities=21%  Similarity=0.255  Sum_probs=67.6

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      .+|+-+.--..-|+.++..|+|.+|+..|.+|++.+|+++.+++|++.|+..++++..|....++++++.|+.
T Consensus       353 ~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~  425 (539)
T KOG0548|consen  353 INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNF  425 (539)
T ss_pred             hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchH
Confidence            4667777778889999999999999999999999999999999999999999999999999999999987764

>KOG2076|consensus

Probab=97.85  E-value=4e-05  Score=71.60  Aligned_cols=73  Identities=12%  Similarity=0.139  Sum_probs=52.8

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +.+|.++.+|..||.+|.++|+.+.+..++-.|--++|++.+.|..++....++|+|++|.-+|.++++..|.
T Consensus       167 kqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~  239 (895)
T KOG2076|consen  167 KQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPS  239 (895)
T ss_pred             HhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc
Confidence            4567777777777777777777777777777777777777777777777777777777777777777766654

>KOG1129|consensus

Probab=97.85  E-value=3.3e-05  Score=65.17  Aligned_cols=70  Identities=16%  Similarity=0.026  Sum_probs=65.5

Q ss_pred             CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      .-++.|+|||.+....|++.-|..||+-||..||++.++++||+......|+.++|...+..+....|..
T Consensus       393 ~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m  462 (478)
T KOG1129|consen  393 QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM  462 (478)
T ss_pred             hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence            3478999999999999999999999999999999999999999999999999999999999998888764

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.83  E-value=5.4e-05  Score=66.61  Aligned_cols=73  Identities=19%  Similarity=0.126  Sum_probs=66.7

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +..|+|+-.+...|.++...|+.++|++.+++++.++|+.+-.+.|+|..+++.|+..+|+..++......|+
T Consensus       334 ~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~  406 (484)
T COG4783         334 AAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE  406 (484)
T ss_pred             HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Confidence            4679999999999999999999999999999999999999999999999999999999888877777766665

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.82  E-value=2.4e-05  Score=50.77  Aligned_cols=49  Identities=24%  Similarity=0.247  Sum_probs=43.8

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAH   50 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~   50 (222)
                      ..+|++..+++.+|.++.+.|++++|...+++++..+|+++..+..++.
T Consensus        19 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen   19 QRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            3579999999999999999999999999999999999999888776654

...

>KOG0624|consensus

Probab=97.81  E-value=2.6e-05  Score=66.19  Aligned_cols=73  Identities=21%  Similarity=0.207  Sum_probs=66.9

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..+|++-.+++..|.+|..+|+-..|+.-+.+.|++.|++..+....|++++++|.+++|++.|++++.-.|+
T Consensus        66 e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s  138 (504)
T KOG0624|consen   66 EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPS  138 (504)
T ss_pred             cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCC
Confidence            4689999999999999999999999999999999999999999999999999999999999999998876553

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.81  E-value=7.9e-06  Score=46.08  Aligned_cols=29  Identities=17%  Similarity=0.106  Sum_probs=26.6

Q ss_pred             CCCCCCCHHHHHHHHHhcccCCCcHHHHH
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPGNIPEAIQ   29 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g~~~eA~~   29 (222)
                      |.++|+++.+|++||.+|...|++++|++
T Consensus         6 ie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    6 IELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             HHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            35799999999999999999999999973

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.79  E-value=1.9e-05  Score=63.09  Aligned_cols=73  Identities=14%  Similarity=0.132  Sum_probs=58.9

Q ss_pred             CCCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      |++.|+.|++++.||.-+...|+++.|.+.|...+++||.+.-++.|.|..+...|++.-|...+.+.-+..|
T Consensus        92 Lai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~  164 (297)
T COG4785          92 LAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDP  164 (297)
T ss_pred             hhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCC
Confidence            4678888888888888888888888888888888888888888888888888888888888776665554444

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.78  E-value=9.2e-05  Score=61.69  Aligned_cols=73  Identities=18%  Similarity=0.046  Sum_probs=66.7

Q ss_pred             CCCCCCHHHHHHHHHhcccCC---CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPG---NIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g---~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+.|++++.+..+|.++.-+.   ...++.+.|++++++||++..+++.|+..+.+.|++.+|...++.++...|.
T Consensus       184 rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~  259 (287)
T COG4235         184 RLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA  259 (287)
T ss_pred             HhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence            478999999999999998544   4789999999999999999999999999999999999999999999877774

>KOG1173|consensus

Probab=97.75  E-value=5e-05  Score=67.85  Aligned_cols=72  Identities=15%  Similarity=0.156  Sum_probs=68.6

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..|+.+..|+..|.-|...|++++|..+|-+|..+||.+..+|...|+.+...+.-++|..+|..+-++.+.
T Consensus       307 ~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G  378 (611)
T KOG1173|consen  307 LYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG  378 (611)
T ss_pred             hCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC
Confidence            579999999999999999999999999999999999999999999999999999999999999999988775

>PRK15331 chaperone protein SicA; Provisional

Probab=97.74  E-value=7.7e-05  Score=57.21  Aligned_cols=70  Identities=16%  Similarity=0.090  Sum_probs=64.1

Q ss_pred             CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ++.-+..+..|.-+...|++++|...|+-...++|.+++.+..||.|++..++|++|+..|..+..+.++
T Consensus        34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~  103 (165)
T PRK15331         34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN  103 (165)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence            4456778899999999999999999999999999999999999999999999999999999888877665

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=97.74  E-value=0.00015  Score=62.96  Aligned_cols=72  Identities=19%  Similarity=0.145  Sum_probs=57.2

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFP-----DAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~-----~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+|.+..++..++.++...|++++|++.|+++++.+|.+.     ..+.+++.++...+++++|...++++++..|+
T Consensus       136 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  212 (389)
T PRK11788        136 EGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQ  212 (389)
T ss_pred             CCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC
Confidence            4677788888888888888888888888888888887753     25667888888888888888888888776654

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=97.74  E-value=8.1e-05  Score=63.87  Aligned_cols=69  Identities=12%  Similarity=-0.034  Sum_probs=61.4

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFP----DAYCNLAHCLQIVCDWTDYEARMKKLVS   70 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~----~a~~~l~~~~~~~~~~~~a~~~~~~~~~   70 (222)
                      ..+|+++.++..+|.++...|++++|+.+++++++..|.++    ..+..++.++...|++++|...+++++.
T Consensus       142 ~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~  214 (355)
T cd05804         142 ELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA  214 (355)
T ss_pred             hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence            56899999999999999999999999999999999987543    3466899999999999999999988853

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.74  E-value=1.5e-05  Score=45.45  Aligned_cols=29  Identities=24%  Similarity=0.352  Sum_probs=22.9

Q ss_pred             HHHHHHHhcccCCCcHHHHHHHHHHHHhC
Q psy17695         10 GILFSNSSFPSPGNIPEAIQSYRTALKLK   38 (222)
Q Consensus        10 ~~~~lg~~l~~~g~~~eA~~~~~~Al~l~   38 (222)
                      ++.+||.++.++|++++|+.+|+++|.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            57788999999999999999999966553

>KOG4642|consensus

Probab=97.74  E-value=7.6e-05  Score=60.36  Aligned_cols=74  Identities=16%  Similarity=0.110  Sum_probs=61.1

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      .++|..+..|.|-+.++.++.+|+.+....++|++++|+.+.+++.+|.+++....+.+++..++++..+..++
T Consensus        38 ~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~  111 (284)
T KOG4642|consen   38 CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ  111 (284)
T ss_pred             hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence            46788888888888888888888888888888888888888888888888888888888888888887777653

>KOG1156|consensus

Probab=97.72  E-value=8.7e-05  Score=67.31  Aligned_cols=75  Identities=21%  Similarity=0.176  Sum_probs=66.1

Q ss_pred             CCCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      +.+++.....|..+|.+++...+|+||+.||+.|++++|+|-..+..++....++++++.....-.+.+++.|.+
T Consensus        68 lr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~  142 (700)
T KOG1156|consen   68 LRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ  142 (700)
T ss_pred             hccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh
Confidence            457888999999999999999999999999999999999999999999999999999888777666666665543

>KOG4648|consensus

Probab=97.71  E-value=3.8e-05  Score=65.19  Aligned_cols=63  Identities=19%  Similarity=0.185  Sum_probs=57.2

Q ss_pred             HHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695         12 LFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus        12 ~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      -..|+-|+++|+|+|||+||.+++.++|.++-.+.|.+.+|..+..+..|+..+..++.+...
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~  163 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL  163 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH
Confidence            456899999999999999999999999999999999999999999999999888888877654

>KOG0550|consensus

Probab=97.70  E-value=7.9e-05  Score=64.50  Aligned_cols=72  Identities=18%  Similarity=0.158  Sum_probs=63.6

Q ss_pred             CCCCC----CHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695          2 MKTPF----FKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         2 ~~~P~----~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      .++|+    ++..+.|.+.+..++|+..||+...++|++|+|....++...|.|+..+++|++|.+.|+++.+...
T Consensus       277 ~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~  352 (486)
T KOG0550|consen  277 NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEK  352 (486)
T ss_pred             cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            45555    4677889999999999999999999999999999999999999999999999999999999886543

>KOG2076|consensus

Probab=97.70  E-value=0.00014  Score=68.15  Aligned_cols=71  Identities=15%  Similarity=0.022  Sum_probs=69.0

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      ++|.+.+.|..++....++|++.+|+-||.+|++.+|.+....++.+..+.++|+...|...|.++..+.|
T Consensus       202 L~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  202 LNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             cCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999998887

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.68  E-value=0.00029  Score=51.59  Aligned_cols=64  Identities=17%  Similarity=0.065  Sum_probs=57.0

Q ss_pred             CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17695          6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPD---FPDAYCNLAHCLQIVCDWTDYEARMKKLV   69 (222)
Q Consensus         6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~---~~~a~~~l~~~~~~~~~~~~a~~~~~~~~   69 (222)
                      .-..++..+|.++..+|++++|+..+++++.-.|+   +......++.++...|++++|.+.+-.++
T Consensus        36 ~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   36 DRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEAL  102 (120)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            34678999999999999999999999999999899   88899999999999999999987664443

>KOG4555|consensus

Probab=97.66  E-value=0.00016  Score=53.46  Aligned_cols=65  Identities=20%  Similarity=0.341  Sum_probs=59.6

Q ss_pred             HHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695         10 GILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus        10 ~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+-.-|+++...|+.++|++.|.+++.+-|..+.+++|.+..++.+|+.++|...+.+++++...
T Consensus        45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~  109 (175)
T KOG4555|consen   45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGD  109 (175)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc
Confidence            44567899999999999999999999999999999999999999999999999999999987654

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.65  E-value=0.00046  Score=51.82  Aligned_cols=69  Identities=19%  Similarity=0.165  Sum_probs=60.6

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQL   76 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~l   76 (222)
                      ..+...++..+...|++++|+..+++++.++|-+..++..+..++...|+..+|...|+++.+...+.+
T Consensus        62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~el  130 (146)
T PF03704_consen   62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREEL  130 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence            356777888899999999999999999999999999999999999999999999999999998888643

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1128|consensus

Probab=97.60  E-value=0.0001  Score=67.71  Aligned_cols=65  Identities=12%  Similarity=0.115  Sum_probs=51.9

Q ss_pred             CCCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARM   65 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~   65 (222)
                      |..+|-....|+++|.+..+++++..|.++|.+++.++|++.++|+|++..+...++-.+|-..+
T Consensus       512 l~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l  576 (777)
T KOG1128|consen  512 LEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKL  576 (777)
T ss_pred             hhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHH
Confidence            45788888999999999999999999999999999999999999999988776544443333333

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.59  E-value=0.00043  Score=57.61  Aligned_cols=68  Identities=15%  Similarity=0.042  Sum_probs=61.6

Q ss_pred             CHHHHHHHHHhc-ccCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          7 FKVGILFSNSSF-PSPGNIPEAIQSYRTALKLKPDF---PDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         7 ~~~~~~~lg~~l-~~~g~~~eA~~~~~~Al~l~P~~---~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ....++..+..+ .+.|++++|+..|++.++..|++   +.+++.+|.++...|++++|...|++++...|+
T Consensus       141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~  212 (263)
T PRK10803        141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK  212 (263)
T ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            457788888876 66799999999999999999998   589999999999999999999999999988886

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.53  E-value=0.0003  Score=61.72  Aligned_cols=65  Identities=15%  Similarity=0.183  Sum_probs=59.6

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMK   66 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~   66 (222)
                      ..+|.+.+.+...+..|.+.++++.|+++.++|+++.|++-..|+.|+.+|..+|+|++|...+.
T Consensus       228 ~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN  292 (395)
T PF09295_consen  228 KENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALN  292 (395)
T ss_pred             HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence            45788999999999999999999999999999999999999999999999999999999886443

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.53  E-value=0.00019  Score=60.55  Aligned_cols=71  Identities=18%  Similarity=0.070  Sum_probs=57.1

Q ss_pred             CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHh
Q psy17695          4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDW-TDYEARMKKLVSIVAE   74 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~   74 (222)
                      .+..+..++.++.++..+|+++||...+++|++.+|++++++.|+..+...+|+. +.+.+.+.++....|+
T Consensus       197 ~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~  268 (290)
T PF04733_consen  197 FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN  268 (290)
T ss_dssp             S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred             cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence            3567889999999999999999999999999999999999999999999999998 5566666666555553

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG4234|consensus

Probab=97.51  E-value=0.00027  Score=56.00  Aligned_cols=67  Identities=13%  Similarity=0.147  Sum_probs=55.9

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ...+.|.|.++.++++++.|+....+|++|+|.+..++...+.+|-.+..+++|++.|.+++...|.
T Consensus       134 sIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs  200 (271)
T KOG4234|consen  134 SILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPS  200 (271)
T ss_pred             HHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcc
Confidence            3467788888888888888888888888888888888888888888888888888888888877775

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.49  E-value=0.00046  Score=60.90  Aligned_cols=72  Identities=15%  Similarity=0.089  Sum_probs=65.1

Q ss_pred             CCCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIV   72 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~   72 (222)
                      +.++|+.+..+.++|.+|.+.|++.+|+..+.+.+.-+|+++..|..|+..+..+|+-.++...+.+...+.
T Consensus       367 l~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~  438 (484)
T COG4783         367 LALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALA  438 (484)
T ss_pred             HhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhC
Confidence            457899999999999999999999999999999999999999999999999999999888887766655443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=97.48  E-value=0.00028  Score=67.48  Aligned_cols=73  Identities=15%  Similarity=0.056  Sum_probs=61.1

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ...|.|+..+..+|.++...|+..+|+..+++++.++|++..+...++.+++.+++|.+|+...+++++..|+
T Consensus       444 ~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe  516 (822)
T PRK14574        444 STAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPE  516 (822)
T ss_pred             HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCC
Confidence            3568888888888888888888888888888888888888888888888888888888888888777777765

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.46  E-value=0.00065  Score=56.03  Aligned_cols=68  Identities=16%  Similarity=0.189  Sum_probs=61.1

Q ss_pred             CHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF---PDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~---~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      -+++++.||.++..+|++++|...|..+++--|++   +++++-+|.++..+++-++|...++++.+..|+
T Consensus       177 ~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~  247 (262)
T COG1729         177 TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPG  247 (262)
T ss_pred             cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence            47899999999999999999999999999987665   588999999999999999999999998887775

>smart00028 TPR Tetratricopeptide repeats

Probab=97.45  E-value=0.00012  Score=38.97  Aligned_cols=33  Identities=24%  Similarity=0.428  Sum_probs=30.0

Q ss_pred             HHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC
Q psy17695          9 VGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF   41 (222)
Q Consensus         9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~   41 (222)
                      .+++++|.++..+|++++|+.+|+++++++|++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            578899999999999999999999999998864

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.45  E-value=0.00021  Score=48.60  Aligned_cols=53  Identities=25%  Similarity=0.377  Sum_probs=44.7

Q ss_pred             cCCCcHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695         20 SPGNIPEAIQSYRTALKLKPD--FPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus        20 ~~g~~~eA~~~~~~Al~l~P~--~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      ++|++++|+..|+++++.+|.  +...++++|.|+...|++++|...+++ ....+
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~   55 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP   55 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC
Confidence            368999999999999999995  466788899999999999999998887 44444

>KOG4555|consensus

Probab=97.43  E-value=0.00088  Score=49.61  Aligned_cols=69  Identities=14%  Similarity=0.134  Sum_probs=62.0

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFP----DAYCNLAHCLQIVCDWTDYEARMKKLVSI   71 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~----~a~~~l~~~~~~~~~~~~a~~~~~~~~~~   71 (222)
                      +-|..+.+++|.+.+++-+|+.++|++-+++|+++..+..    .+++..|.+|+..|+-+.|...|+.+.++
T Consensus        72 l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L  144 (175)
T KOG4555|consen   72 LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQL  144 (175)
T ss_pred             hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence            4589999999999999999999999999999999976654    56899999999999999999999887654

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.39  E-value=0.00097  Score=54.86  Aligned_cols=70  Identities=14%  Similarity=0.047  Sum_probs=64.7

Q ss_pred             CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAY---CNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      ..+..++..|..+.+.|++++|+..|++++...|+.+.+.   .++|.++...+++++|...+++.++..|+.
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~  102 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH  102 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCC
Confidence            3678889999999999999999999999999999987664   899999999999999999999999999974

>KOG4642|consensus

Probab=97.39  E-value=0.00012  Score=59.17  Aligned_cols=68  Identities=18%  Similarity=0.291  Sum_probs=61.8

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      ++-+..-|+-+..-.+|..|+.+|-+|+.++|..+..+.|.+.|++++.+|+...+..++++++.|+.
T Consensus        10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~   77 (284)
T KOG4642|consen   10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL   77 (284)
T ss_pred             HHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH
Confidence            34455667888888999999999999999999999999999999999999999999999999999874

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.38  E-value=0.00066  Score=58.50  Aligned_cols=71  Identities=17%  Similarity=0.141  Sum_probs=64.9

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      +..|++|..+..||.++.+.+.|.+|..+|+.|++..|+ ...+..+|+++.++|+..+|.+.+++++....
T Consensus       322 ~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~  392 (400)
T COG3071         322 KQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLLTR  392 (400)
T ss_pred             HhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence            567999999999999999999999999999999999998 67778999999999999999999999985544

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.37  E-value=0.00088  Score=50.40  Aligned_cols=64  Identities=23%  Similarity=0.191  Sum_probs=55.5

Q ss_pred             CCCC---HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17695          4 TPFF---KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF---PDAYCNLAHCLQIVCDWTDYEARMKK   67 (222)
Q Consensus         4 ~P~~---~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~---~~a~~~l~~~~~~~~~~~~a~~~~~~   67 (222)
                      .|+.   ..+.+.+|.++...|++++|+..|+.++...|+.   ..+...|+.++...|++++|...++.
T Consensus        41 ~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~  110 (145)
T PF09976_consen   41 YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ  110 (145)
T ss_pred             CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            4555   6788899999999999999999999999988776   46889999999999999999887644

>KOG2002|consensus

Probab=97.37  E-value=0.00012  Score=69.06  Aligned_cols=71  Identities=17%  Similarity=0.175  Sum_probs=64.2

Q ss_pred             CCCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSI   71 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~   71 (222)
                      |..+|.|.-+-+.+|.+|...|++.+|++.|.+..+---++.++|.|+|+|+..+|+|..|++.|+.+++-
T Consensus       639 L~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk  709 (1018)
T KOG2002|consen  639 LRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK  709 (1018)
T ss_pred             HhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999887788999999999999999999999999888754

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.32  E-value=0.0013  Score=49.39  Aligned_cols=69  Identities=16%  Similarity=0.088  Sum_probs=47.5

Q ss_pred             CHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF---PDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~---~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      .+..++.-|....+.|+|++|++.|+....--|-.   ..+...|+.++...+++++|.+.+++.+++.|.+
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~h   80 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTH   80 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence            35566677777777777777777777777665553   3566777777777777777777777777776653

>KOG3060|consensus

Probab=97.31  E-value=0.0011  Score=54.30  Aligned_cols=70  Identities=13%  Similarity=0.027  Sum_probs=56.1

Q ss_pred             CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHh
Q psy17695          5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCD---WTDYEARMKKLVSIVAE   74 (222)
Q Consensus         5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~   74 (222)
                      +.++++|..|+.+|...|+|+.|.-||+..+-++|-++..+..++.++.-+|.   .+-+..+|.+++.+.+.
T Consensus       151 ~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~  223 (289)
T KOG3060|consen  151 MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK  223 (289)
T ss_pred             cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH
Confidence            67888888888888888888888888888888888888888888888777665   34466777777777774

>PRK11906 transcriptional regulator; Provisional

Probab=97.29  E-value=0.00042  Score=61.23  Aligned_cols=73  Identities=3%  Similarity=-0.177  Sum_probs=66.2

Q ss_pred             CCCCCCHHHHHHHHHhcccC---------CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy17695          2 MKTPFFKVGILFSNSSFPSP---------GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIV   72 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~---------g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~   72 (222)
                      .++|+++.++..++.++...         ....+|...-++|++++|+++.++..+|.++...++.+.+...++++..+.
T Consensus       289 ~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~  368 (458)
T PRK11906        289 DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS  368 (458)
T ss_pred             cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC
Confidence            47899999999999888754         346788999999999999999999999999999999999999999999999


Q ss_pred             Hh
Q psy17695         73 AE   74 (222)
Q Consensus        73 ~~   74 (222)
                      |+
T Consensus       369 Pn  370 (458)
T PRK11906        369 TD  370 (458)
T ss_pred             Cc
Confidence            87

>KOG1127|consensus

Probab=97.29  E-value=0.00064  Score=64.60  Aligned_cols=75  Identities=23%  Similarity=0.216  Sum_probs=65.6

Q ss_pred             CCCCCCCHHHHHHHHHhcccCCC-cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhh
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPGN-IPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVC---DWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g~-~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~   75 (222)
                      |+.+|+|-.+|.-||.++..+|. .++|..+|..|.+++|++.-||-.|++.|....   +.+++-.+|++++-+++++
T Consensus        29 Lk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~~~dIl~ld~~~~~yq~~~l~le~q  107 (1238)
T KOG1127|consen   29 LKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYERYNDILDLDRAAKCYQRAVLILENQ  107 (1238)
T ss_pred             HhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHccchhhhhhHhHHHHHHHHHhhhhh
Confidence            56899999999999999999999 999999999999999999999999999998744   4666777787777766653

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.29  E-value=0.00062  Score=37.81  Aligned_cols=33  Identities=15%  Similarity=0.308  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695         42 PDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus        42 ~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +.+|+++|.++..++++++|+.+|++++++.|+
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            468999999999999999999999999998875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PRK14574 hmsH outer membrane protein; Provisional

Probab=97.28  E-value=0.00082  Score=64.32  Aligned_cols=70  Identities=11%  Similarity=0.093  Sum_probs=54.1

Q ss_pred             CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      |........+|.++..+|++++|++.|+++++.+|+++.++..++..+...++.++|.+.++++....|.
T Consensus        99 n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~  168 (822)
T PRK14574         99 NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPT  168 (822)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc
Confidence            3344445555778888888888888888888888888888888888888888888888777777665554

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.28  E-value=0.00026  Score=38.85  Aligned_cols=33  Identities=21%  Similarity=0.285  Sum_probs=27.0

Q ss_pred             HHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC
Q psy17695          9 VGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF   41 (222)
Q Consensus         9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~   41 (222)
                      ++++++|.++.++|++++|+..|++.++..|++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            467788888888888888888888888888874

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.28  E-value=0.0008  Score=50.63  Aligned_cols=61  Identities=15%  Similarity=0.056  Sum_probs=53.5

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLV   69 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~   69 (222)
                      +.+.+.|+.++..+|++++|+..++. +.-.+-.+.++..+|.++...|++++|...|++++
T Consensus        85 ~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   85 PLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            56889999999999999999999976 44455667889999999999999999999998864

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.27  E-value=0.0016  Score=52.02  Aligned_cols=70  Identities=16%  Similarity=0.171  Sum_probs=59.3

Q ss_pred             CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF---PDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~---~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      ..+..++..|..+.+.|++++|+..|++.+...|.+   +.+.+.+|.++...+++++|...+++.++..|+.
T Consensus         3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~   75 (203)
T PF13525_consen    3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS   75 (203)
T ss_dssp             --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence            357889999999999999999999999999998875   4789999999999999999999999999998873

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=97.26  E-value=0.0012  Score=58.05  Aligned_cols=69  Identities=7%  Similarity=0.056  Sum_probs=58.2

Q ss_pred             CCCCCHHHH-HHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy17695          3 KTPFFKVGI-LFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSI   71 (222)
Q Consensus         3 ~~P~~~~~~-~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~   71 (222)
                      .+|++..+. ...+.++...|++++|++.+++.++.+|+++.++..++.++...|+|+++.+.+.++.+.
T Consensus       147 ~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~  216 (398)
T PRK10747        147 LADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKA  216 (398)
T ss_pred             cCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc
Confidence            456664433 344889999999999999999999999999999999999999999999999777776643

>KOG0543|consensus

Probab=97.23  E-value=0.00095  Score=57.78  Aligned_cols=73  Identities=16%  Similarity=0.200  Sum_probs=61.0

Q ss_pred             CCCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHH
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY-EARMKKLVSIVA   73 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a-~~~~~~~~~~~~   73 (222)
                      |..+|+|..+++..|.++..+|+++.|+..|++|++++|+|-.+...+..+......+++. .+.|..+.....
T Consensus       284 Le~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  284 LELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             HhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            4578999999999999999999999999999999999999999999999888777665554 345555544433

>KOG0624|consensus

Probab=97.20  E-value=0.00036  Score=59.45  Aligned_cols=73  Identities=12%  Similarity=0.142  Sum_probs=68.4

Q ss_pred             CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q psy17695          4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQL   76 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~l   76 (222)
                      +|.+.+-|+.+|..+...|++..|+..|..|++++|++..+++..+.+|..+|.-..|...+.+++++.|+..
T Consensus        34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~  106 (504)
T KOG0624|consen   34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFM  106 (504)
T ss_pred             CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHH
Confidence            5667888999999999999999999999999999999999999999999999999999999999999888753

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.16  E-value=0.002  Score=40.06  Aligned_cols=43  Identities=14%  Similarity=0.084  Sum_probs=36.1

Q ss_pred             HHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17695          9 VGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHC   51 (222)
Q Consensus         9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~   51 (222)
                      +.++.++..+.++|++++|..+.+++|+++|++.++....-.+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            4578899999999999999999999999999999987666544

>KOG1840|consensus

Probab=97.15  E-value=0.00099  Score=60.22  Aligned_cols=70  Identities=19%  Similarity=0.214  Sum_probs=61.4

Q ss_pred             CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKL--------KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l--------~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      |.-.....++|.+|..++++.+|+..|++|+.+        +|.-+.++.||+..|...|++++|..+++.++.+..+
T Consensus       238 l~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~  315 (508)
T KOG1840|consen  238 LVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK  315 (508)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence            444556667999999999999999999999987        3555678999999999999999999999999998776

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.15  E-value=0.0011  Score=36.62  Aligned_cols=33  Identities=9%  Similarity=0.205  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695         42 PDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus        42 ~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +.+++.+|.++...|++++|.+.+++++++.|+
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            468999999999999999999999999998875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1128|consensus

Probab=97.13  E-value=0.00055  Score=63.06  Aligned_cols=73  Identities=12%  Similarity=0.038  Sum_probs=69.1

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .++|++.++|+|++.+|...|+-.+|-.++.+|++-+-++...|-|...+....|.|++|...|.+.+.+-.+
T Consensus       547 tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~  619 (777)
T KOG1128|consen  547 TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK  619 (777)
T ss_pred             hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence            5789999999999999999999999999999999999999999999999999999999999999998876554

>KOG1840|consensus

Probab=97.08  E-value=0.0011  Score=59.95  Aligned_cols=72  Identities=13%  Similarity=0.092  Sum_probs=65.7

Q ss_pred             CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKL--------KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l--------~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      .|....+..+||..|..+|+++.|+..+++|+++        .|.-.....++|.+|+.++++.+|+..|++++.+..+.
T Consensus       195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~  274 (508)
T KOG1840|consen  195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV  274 (508)
T ss_pred             CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence            5777788889999999999999999999999999        78877788889999999999999999999999887753

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.08  E-value=0.0019  Score=58.67  Aligned_cols=65  Identities=15%  Similarity=0.246  Sum_probs=60.5

Q ss_pred             HHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695         10 GILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus        10 ~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +++.++..|...|++++|+.+.++||+..|..++.++..|.++...|++.+|.+.++++..+...
T Consensus       196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~  260 (517)
T PF12569_consen  196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA  260 (517)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh
Confidence            45788999999999999999999999999999999999999999999999999999999886553

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG2003|consensus

Probab=97.03  E-value=0.001  Score=58.55  Aligned_cols=71  Identities=14%  Similarity=0.179  Sum_probs=56.5

Q ss_pred             CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +--++.+..|.|++-...|+++.|.+.|+.||.-+....++++|.|..+..+|+.++|..+|-++..++.+
T Consensus       486 dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~n  556 (840)
T KOG2003|consen  486 DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN  556 (840)
T ss_pred             cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh
Confidence            44567778888888888888888888888888888888888888888888888888888888777665554

>TIGR00540 hemY_coli hemY protein

Probab=97.02  E-value=0.0026  Score=56.25  Aligned_cols=68  Identities=6%  Similarity=0.065  Sum_probs=57.2

Q ss_pred             CCCCH-HHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy17695          4 TPFFK-VGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSI   71 (222)
Q Consensus         4 ~P~~~-~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~   71 (222)
                      .|++. .+....+.++...|++++|...+++.++.+|+++.++..++.++...|+|+++.+.+.++.+.
T Consensus       148 ~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~  216 (409)
T TIGR00540       148 AGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA  216 (409)
T ss_pred             CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence            45554 455566888899999999999999999999999999999999999999999998888777754

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG2003|consensus

Probab=96.98  E-value=0.00098  Score=58.70  Aligned_cols=74  Identities=9%  Similarity=0.116  Sum_probs=67.6

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      .++....++++|+|..+..+|++++|++||-+.-.+--++++.++.++++|-.+.+..+|++.+-++..++|+.
T Consensus       518 ~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~d  591 (840)
T KOG2003|consen  518 NNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPND  591 (840)
T ss_pred             cCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCC
Confidence            34556789999999999999999999999999999989999999999999999999999999999998888763

>KOG1308|consensus

Probab=96.98  E-value=0.00052  Score=58.22  Aligned_cols=72  Identities=14%  Similarity=0.178  Sum_probs=66.7

Q ss_pred             CCCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIV   72 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~   72 (222)
                      +.++|..+..|...+.++.++++..+|+.-|..|++++|+.+.-+-..+.+...+|+|+++...++.+.++.
T Consensus       141 i~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld  212 (377)
T KOG1308|consen  141 IELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLD  212 (377)
T ss_pred             cccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcc
Confidence            468899999999999999999999999999999999999999999999999999999999999888887653

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.95  E-value=0.0027  Score=35.96  Aligned_cols=31  Identities=13%  Similarity=0.176  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695         44 AYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus        44 a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ++.+||.++..+|+|++|+++|++++.+..+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~   31 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD   31 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            5789999999999999999999998866654

>KOG2002|consensus

Probab=96.94  E-value=0.0016  Score=61.76  Aligned_cols=70  Identities=14%  Similarity=0.153  Sum_probs=63.7

Q ss_pred             CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF-PDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~-~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      --++.++.+|.++..+|++++|-.+|.++++.+|++ ...++.+|..+...|+.+.+..+|+++....|+.
T Consensus       305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~  375 (1018)
T KOG2002|consen  305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNN  375 (1018)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcch
Confidence            346779999999999999999999999999999998 8889999999999999999999999999888764

>KOG1156|consensus

Probab=96.93  E-value=0.0011  Score=60.30  Aligned_cols=75  Identities=12%  Similarity=0.078  Sum_probs=71.1

Q ss_pred             CCCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      |++.|++.+.+.-.|..+..+|+-+||..+.+.+++.++.+.-.|.-+|.+++...++++|+.+|+.++.+.+++
T Consensus        34 L~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN  108 (700)
T KOG1156|consen   34 LKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDN  108 (700)
T ss_pred             HHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc
Confidence            467899999999999999999999999999999999999999999999999999999999999999999887764

>KOG1174|consensus

Probab=96.92  E-value=0.0033  Score=54.87  Aligned_cols=73  Identities=15%  Similarity=0.165  Sum_probs=66.9

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..+|++.+++...|.++..+|+.++|+-+|+.|..+.|..-+.+-.|.++|...+...||....+.+.+..++
T Consensus       328 ~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~  400 (564)
T KOG1174|consen  328 DSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQN  400 (564)
T ss_pred             ccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhc
Confidence            4688999999999999999999999999999999999999999999999999999999999888888888776

>PRK10941 hypothetical protein; Provisional

Probab=96.91  E-value=0.0047  Score=51.55  Aligned_cols=66  Identities=9%  Similarity=-0.006  Sum_probs=62.0

Q ss_pred             HHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          9 VGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ....||=.+|.+.++++.|+.+.++.+.++|+++.-+-..|.++.+++.+..|...++..++..|+
T Consensus       182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~  247 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE  247 (269)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence            456788899999999999999999999999999999999999999999999999999999988876

>KOG3060|consensus

Probab=96.89  E-value=0.0045  Score=50.74  Aligned_cols=73  Identities=18%  Similarity=0.090  Sum_probs=62.2

Q ss_pred             CCCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      |..||.+...+-..-.++..+|+.-+||+.+..-++.-+++.++|..++.+|...++++.|.-|+++++-..|
T Consensus       113 L~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P  185 (289)
T KOG3060|consen  113 LEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQP  185 (289)
T ss_pred             hccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCC
Confidence            3457888888877778888888888999999889999999999999999999999999999999998875444

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.87  E-value=0.0012  Score=58.23  Aligned_cols=37  Identities=16%  Similarity=0.036  Sum_probs=34.6

Q ss_pred             CCCCCCCHHH---HHHHHHhcccCCCcHHHHHHHHHHHHh
Q psy17695          1 MMKTPFFKVG---ILFSNSSFPSPGNIPEAIQSYRTALKL   37 (222)
Q Consensus         1 l~~~P~~~~~---~~~lg~~l~~~g~~~eA~~~~~~Al~l   37 (222)
                      |.++|+++++   |+|+|.+|..+|++++|+++|++|+++
T Consensus       102 LeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098        102 LELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             HhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4678999965   999999999999999999999999998

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=96.87  E-value=0.0021  Score=51.63  Aligned_cols=68  Identities=15%  Similarity=0.215  Sum_probs=64.4

Q ss_pred             CHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      -+..++..|+.|-.+|-+.-|.--|.+++.+.|+.+++++.||..+...|+++.|.+.|....++.|.
T Consensus        64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~  131 (297)
T COG4785          64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT  131 (297)
T ss_pred             HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc
Confidence            46788999999999999999999999999999999999999999999999999999999999988875

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.86  E-value=0.0018  Score=37.37  Aligned_cols=29  Identities=17%  Similarity=0.297  Sum_probs=17.6

Q ss_pred             HHHHHHHHhcccCCCcHHHHHHHHHHHHh
Q psy17695          9 VGILFSNSSFPSPGNIPEAIQSYRTALKL   37 (222)
Q Consensus         9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~l   37 (222)
                      .++++||.+|..+|++++|+.++++++++
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            45566666666666666666666666654

>KOG0550|consensus

Probab=96.85  E-value=0.0013  Score=57.26  Aligned_cols=75  Identities=12%  Similarity=0.094  Sum_probs=67.1

Q ss_pred             CCCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHH------------HHHHHHHHHHcCCHHHHHHHHHHH
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDA------------YCNLAHCLQIVCDWTDYEARMKKL   68 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a------------~~~l~~~~~~~~~~~~a~~~~~~~   68 (222)
                      |++++.+.++...-|.++.-.++.+.|+..|+++|.++|++..+            +-+-|+-..+.|++..|.++|.++
T Consensus       196 lkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Ytea  275 (486)
T KOG0550|consen  196 LKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEA  275 (486)
T ss_pred             HhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHh
Confidence            57899999999999999999999999999999999999998754            445566677899999999999999


Q ss_pred             HHHHHhh
Q psy17695         69 VSIVAEQ   75 (222)
Q Consensus        69 ~~~~~~~   75 (222)
                      +.+.|+.
T Consensus       276 l~idP~n  282 (486)
T KOG0550|consen  276 LNIDPSN  282 (486)
T ss_pred             hcCCccc
Confidence            9998875

>KOG4162|consensus

Probab=96.84  E-value=0.0022  Score=59.47  Aligned_cols=72  Identities=18%  Similarity=0.154  Sum_probs=63.9

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHHHh
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEA--RMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~--~~~~~~~~~~~   74 (222)
                      ++|..+..|+..|.++...|+++||.++|..|+.+||+++.....+|.++.+.|+..-++.  ....++++.|.
T Consensus       679 ~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~  752 (799)
T KOG4162|consen  679 IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL  752 (799)
T ss_pred             cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC
Confidence            4567778889999999999999999999999999999999999999999999998877777  77888877775

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.83  E-value=0.0078  Score=45.21  Aligned_cols=49  Identities=22%  Similarity=0.295  Sum_probs=40.9

Q ss_pred             CHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHc
Q psy17695          7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPD---AYCNLAHCLQIV   55 (222)
Q Consensus         7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~---a~~~l~~~~~~~   55 (222)
                      -..+.+.||.++.+.|++++|+..+++-++++|+++.   +++..|.+...+
T Consensus        46 a~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~   97 (142)
T PF13512_consen   46 AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ   97 (142)
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence            4578899999999999999999999999999999975   456666555443

>KOG1127|consensus

Probab=96.83  E-value=0.0026  Score=60.60  Aligned_cols=72  Identities=13%  Similarity=0.043  Sum_probs=65.7

Q ss_pred             CCCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIV   72 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~   72 (222)
                      |..+|.+.+.|..+|.+|...|++..|++.|.+|..++|.+..+.+-.+.....+|.+.++...+...+...
T Consensus       589 LR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~  660 (1238)
T KOG1127|consen  589 LRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAF  660 (1238)
T ss_pred             hcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            356899999999999999999999999999999999999999999999999999999999998887776543

>KOG4648|consensus

Probab=96.79  E-value=0.0013  Score=56.11  Aligned_cols=75  Identities=9%  Similarity=0.126  Sum_probs=70.9

Q ss_pred             CCCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      |..+|-|+..+.|.+.+|.++.+|..|..-++.|+.|+-.+..++...+.+...+|...+|.+.++.++++.|+.
T Consensus       124 ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~  198 (536)
T KOG4648|consen  124 IAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKN  198 (536)
T ss_pred             hccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCccc
Confidence            457899999999999999999999999999999999999999999999999999999999999999999988763

>KOG1174|consensus

Probab=96.75  E-value=0.0054  Score=53.56  Aligned_cols=74  Identities=11%  Similarity=0.101  Sum_probs=67.4

Q ss_pred             CCCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      |+.+|+...+...++.++..-|++++++..++++|+..|+ ...+..||.++..+..+.++.+.|..++++.|+.
T Consensus       431 L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~  504 (564)
T KOG1174|consen  431 LKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS  504 (564)
T ss_pred             hccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence            5688999999999999999999999999999999998887 5678899999999999999999999999998863

>KOG1129|consensus

Probab=96.65  E-value=0.00065  Score=57.58  Aligned_cols=72  Identities=10%  Similarity=-0.034  Sum_probs=54.3

Q ss_pred             CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhh
Q psy17695          6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLD   77 (222)
Q Consensus         6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~l~   77 (222)
                      ..++.+..|+.+|.+..+.+.|+..|...+..-|.++..+...+.++..+++.++|.+.|+.+++..+.+++
T Consensus       254 ~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvE  325 (478)
T KOG1129|consen  254 PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVE  325 (478)
T ss_pred             CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccce
Confidence            456677777777777777777777777777777777777777777777777777777777777777665544

>KOG3081|consensus

Probab=96.52  E-value=0.0093  Score=49.22  Aligned_cols=61  Identities=18%  Similarity=0.053  Sum_probs=55.7

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEA   63 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~   63 (222)
                      +.|..+...+.+++++..+|+++||...++.||.-++++++++.|+..+-..+|...++.+
T Consensus       202 k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~  262 (299)
T KOG3081|consen  202 KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTE  262 (299)
T ss_pred             ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHH
Confidence            3577888999999999999999999999999999999999999999999999998866654

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=96.52  E-value=0.0016  Score=50.67  Aligned_cols=51  Identities=12%  Similarity=0.101  Sum_probs=40.7

Q ss_pred             CCCCCCCHHHHHHHHHhcccCCC-----------cHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPGN-----------IPEAIQSYRTALKLKPDFPDAYCNLAHC   51 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g~-----------~~eA~~~~~~Al~l~P~~~~a~~~l~~~   51 (222)
                      |.++|+...++.++|++|..++.           |++|..+|++|...+|++...+-.|-.+
T Consensus        62 L~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~  123 (186)
T PF06552_consen   62 LKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA  123 (186)
T ss_dssp             HHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             HhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            35789999999999999998875           8899999999999999998887777544

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=96.50  E-value=0.015  Score=47.77  Aligned_cols=53  Identities=15%  Similarity=0.147  Sum_probs=43.1

Q ss_pred             CCCCCHHH---HHHHHHhcccCCCcHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHc
Q psy17695          3 KTPFFKVG---ILFSNSSFPSPGNIPEAIQSYRTALKLKPDFP---DAYCNLAHCLQIV   55 (222)
Q Consensus         3 ~~P~~~~~---~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~---~a~~~l~~~~~~~   55 (222)
                      ..|..+.+   .+.+|.++.+++++++|+..|++.+++.|+++   .+++.+|.+....
T Consensus        61 ~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~  119 (243)
T PRK10866         61 RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMAL  119 (243)
T ss_pred             hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhc
Confidence            34555444   48999999999999999999999999998875   5688888875444

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.42  E-value=0.0056  Score=36.21  Aligned_cols=34  Identities=15%  Similarity=0.289  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695         42 PDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus        42 ~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      +.++..++.++...|++++|++.|+++++..|+.
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~   34 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDD   34 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            4678999999999999999999999999999874

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=96.39  E-value=0.012  Score=49.89  Aligned_cols=68  Identities=10%  Similarity=0.001  Sum_probs=54.1

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      +..+..|+..+....+.+.|+..+.+|++.+|+.+.+-..+|.+....|+++.|.+.++.+.+..|+.
T Consensus       180 AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y  247 (389)
T COG2956         180 AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEY  247 (389)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH
Confidence            45566777777777888888888888888888888888888888888888888888888777766653

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.37  E-value=0.027  Score=39.01  Aligned_cols=44  Identities=30%  Similarity=0.326  Sum_probs=24.0

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy17695         28 IQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSI   71 (222)
Q Consensus        28 ~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~   71 (222)
                      +..++++++.+|++.++.+.++..+...|++++|.+.+-++++.
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~   51 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR   51 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            44555666666666666666666666666666555554444443

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=96.35  E-value=0.0087  Score=50.74  Aligned_cols=72  Identities=8%  Similarity=0.110  Sum_probs=63.6

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFP-DAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~-~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      .-+|....+-.-+|.+....|+++.|++.++++++-||++. ++.-.|..||..+|+.++....+.++.+..+
T Consensus       208 qa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~  280 (389)
T COG2956         208 QADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT  280 (389)
T ss_pred             hhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence            45788899999999999999999999999999999999985 6778888999999999999888877776544

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=96.30  E-value=0.0057  Score=58.75  Aligned_cols=47  Identities=13%  Similarity=-0.154  Sum_probs=29.6

Q ss_pred             CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy17695          4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAH   50 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~   50 (222)
                      +|.+..+|..|..++...|++++|++..+.+++.+|+...+++.+|.
T Consensus        27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~   73 (906)
T PRK14720         27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI   73 (906)
T ss_pred             CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH
Confidence            56666666666666666666666666666666666655544444444

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.30  E-value=0.013  Score=32.11  Aligned_cols=32  Identities=19%  Similarity=0.364  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695         43 DAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus        43 ~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+++.+|.++..+|++++|.+.|++++++.|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            57899999999999999999999999998774

...

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.28  E-value=0.0082  Score=54.75  Aligned_cols=74  Identities=11%  Similarity=0.025  Sum_probs=61.1

Q ss_pred             CCCCCCCHHHHHHHHHhcccC--------CCcHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17695          1 MMKTPFFKVGILFSNSSFPSP--------GNIPEAIQSYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVS   70 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~--------g~~~eA~~~~~~Al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~   70 (222)
                      +.++|+++.+|..++.++...        ++..++....++++.+  +|.++.++.-++..+...|++++|...+++++.
T Consensus       369 i~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~  448 (517)
T PRK10153        369 LKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID  448 (517)
T ss_pred             HHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            357999999999998877553        2355677777887775  888889999999999999999999999999998


Q ss_pred             HHHh
Q psy17695         71 IVAE   74 (222)
Q Consensus        71 ~~~~   74 (222)
                      +.|.
T Consensus       449 L~ps  452 (517)
T PRK10153        449 LEMS  452 (517)
T ss_pred             cCCC
Confidence            8764

>KOG4234|consensus

Probab=96.28  E-value=0.0099  Score=47.28  Aligned_cols=63  Identities=21%  Similarity=0.237  Sum_probs=55.8

Q ss_pred             HHHHHhcccCCCcHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695         12 LFSNSSFPSPGNIPEAIQSYRTALKLKPDFP-----DAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus        12 ~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~-----~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      -.=|+-++..|+|++|..-|..||++-|.-.     ..+.|.+.++.+++.|+.|+..+.+++.+.|.
T Consensus        99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt  166 (271)
T KOG4234|consen   99 KKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT  166 (271)
T ss_pred             HHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch
Confidence            3457888999999999999999999999865     46899999999999999999999999988773

>KOG3824|consensus

Probab=96.27  E-value=0.0078  Score=50.80  Aligned_cols=65  Identities=15%  Similarity=0.218  Sum_probs=54.7

Q ss_pred             HHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695         10 GILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus        10 ~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +-.+.+.-..+.|+.+.|...|+.|++++|++++++..+|...-...+.-+|..+|-+++.+.|.
T Consensus       118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~  182 (472)
T KOG3824|consen  118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPG  182 (472)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC
Confidence            34455556678899999999999999999999999999999988888888899999888877664

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.17  E-value=0.0087  Score=32.50  Aligned_cols=32  Identities=22%  Similarity=0.404  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695         43 DAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus        43 ~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ++++++|.++...|++++|...++++++..|+
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            47899999999999999999999999988775

>KOG0376|consensus

Probab=96.12  E-value=0.0021  Score=56.86  Aligned_cols=73  Identities=11%  Similarity=0.152  Sum_probs=47.2

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .++|+++..+.+.+.++.+.+++.+|+.-+.+|++++|....+++..|.+.+..+.+.+|...++....+.|+
T Consensus        32 ~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pn  104 (476)
T KOG0376|consen   32 ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPN  104 (476)
T ss_pred             hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcC
Confidence            3566666666666666666666666666666666666666666666666666666666666666665555543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.02  E-value=0.021  Score=45.54  Aligned_cols=70  Identities=20%  Similarity=0.253  Sum_probs=51.7

Q ss_pred             CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcC-----------CHHHHHHHHHHHHH
Q psy17695          5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFP---DAYCNLAHCLQIVC-----------DWTDYEARMKKLVS   70 (222)
Q Consensus         5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~---~a~~~l~~~~~~~~-----------~~~~a~~~~~~~~~   70 (222)
                      |--+.+.+.+|.++.+.|++++|+..|++.++..|+++   .+++.+|.++....           ...+|...++.+++
T Consensus        39 ~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~  118 (203)
T PF13525_consen   39 PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIK  118 (203)
T ss_dssp             TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHH
Confidence            45578999999999999999999999999999999976   57888888865542           12356666666666


Q ss_pred             HHHh
Q psy17695         71 IVAE   74 (222)
Q Consensus        71 ~~~~   74 (222)
                      ..|+
T Consensus       119 ~yP~  122 (203)
T PF13525_consen  119 RYPN  122 (203)
T ss_dssp             H-TT
T ss_pred             HCcC
Confidence            6665

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.00  E-value=0.023  Score=53.60  Aligned_cols=64  Identities=8%  Similarity=-0.066  Sum_probs=58.7

Q ss_pred             CHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17695          7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVS   70 (222)
Q Consensus         7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~   70 (222)
                      +...|..|..++...|+++.|...+++.++++|++...+..++++|...|+|++|.+.+++..+
T Consensus       493 ~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~  556 (697)
T PLN03081        493 TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR  556 (697)
T ss_pred             CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            4667999999999999999999999999999999999999999999999999999998877654

>KOG0545|consensus

Probab=95.92  E-value=0.027  Score=46.18  Aligned_cols=66  Identities=15%  Similarity=0.150  Sum_probs=61.3

Q ss_pred             HHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          9 VGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..+.|++.++...|++-|+++.....|..+|+++.|++..+.+....-+..+|.+.+.+++++.|.
T Consensus       231 pLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps  296 (329)
T KOG0545|consen  231 PLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS  296 (329)
T ss_pred             HHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence            467899999999999999999999999999999999999999999888889999999999988774

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.91  E-value=0.028  Score=46.53  Aligned_cols=65  Identities=22%  Similarity=0.297  Sum_probs=60.0

Q ss_pred             HHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695         10 GILFSNSSFPSPGNIPEAIQSYRTALKLKPDF---PDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus        10 ~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~---~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      -.++.+.-+.+.|+|.+|++.|..-++.=|++   +.+++=||.++..+|++++|...|..+.+-.|+
T Consensus       143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~  210 (262)
T COG1729         143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK  210 (262)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC
Confidence            37889999999999999999999999998886   578999999999999999999999999887776

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=95.86  E-value=0.038  Score=48.63  Aligned_cols=69  Identities=17%  Similarity=0.023  Sum_probs=63.9

Q ss_pred             CHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      ++++...++.++...++-.+|+..+.++++.+|.+...+...+..+...++++.|....++++...|..
T Consensus       199 ~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~  267 (395)
T PF09295_consen  199 DPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSE  267 (395)
T ss_pred             CCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence            456778899999999999999999999999999999999999999999999999999999999988873

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=95.74  E-value=0.011  Score=39.19  Aligned_cols=31  Identities=19%  Similarity=0.262  Sum_probs=29.0

Q ss_pred             CHHHHHHHHHhcccCCCcHHHHHHHHHHHHh
Q psy17695          7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKL   37 (222)
Q Consensus         7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l   37 (222)
                      .+.++.++|.++..+|++++|+++|++|+++
T Consensus        45 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen   45 TANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4678999999999999999999999999986

...

>PLN03077 Protein ECB2; Provisional

Probab=95.69  E-value=0.053  Score=52.46  Aligned_cols=63  Identities=10%  Similarity=0.027  Sum_probs=54.1

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVS   70 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~   70 (222)
                      +..|..|-.++...|+.+.+....+++++++|+++..+..|+++|...|+|+++....+...+
T Consensus       657 ~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~  719 (857)
T PLN03077        657 PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE  719 (857)
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence            667777777788888888888888899999999999999999999999999999876665543

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=95.66  E-value=0.062  Score=45.03  Aligned_cols=64  Identities=11%  Similarity=0.126  Sum_probs=50.9

Q ss_pred             HHHHHHHHHhcccC-CCcHHHHHHHHHHHHh--CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy17695          8 KVGILFSNSSFPSP-GNIPEAIQSYRTALKL--KPDF----PDAYCNLAHCLQIVCDWTDYEARMKKLVSI   71 (222)
Q Consensus         8 ~~~~~~lg~~l~~~-g~~~eA~~~~~~Al~l--~P~~----~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~   71 (222)
                      +..+.++|.+|... |++++|+++|++|+++  .-+.    ...+.+++.++...++|++|.+.|+++...
T Consensus       114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~  184 (282)
T PF14938_consen  114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKK  184 (282)
T ss_dssp             HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            56789999999999 9999999999999998  2222    245788899999999999999999887653

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.66  E-value=0.015  Score=47.15  Aligned_cols=60  Identities=17%  Similarity=0.350  Sum_probs=54.6

Q ss_pred             HhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695         16 SSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus        16 ~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      ..+.+.|+.+.|.+.|.+|+++.|+....|+.+|....+.|+.+.|.+.|++.+++.|+.
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            456678999999999999999999999999999999999999999999999999988863

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=95.59  E-value=0.16  Score=46.41  Aligned_cols=69  Identities=19%  Similarity=0.109  Sum_probs=45.6

Q ss_pred             CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHh
Q psy17695          6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVC-----DWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~   74 (222)
                      +.....-..|.+|.++|++++|...|+..|+.+|++...+..+..++....     +.+...+.|+++....|.
T Consensus        36 Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~  109 (517)
T PF12569_consen   36 DKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPR  109 (517)
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCcc
Confidence            444556677778888888888888888888888888877777777763332     234445555555544443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG3824|consensus

Probab=95.56  E-value=0.0086  Score=50.55  Aligned_cols=52  Identities=23%  Similarity=0.162  Sum_probs=48.6

Q ss_pred             CCCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCL   52 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~   52 (222)
                      |+++|++++++..+|......+++-+|-+||-+||.++|.+.+++.|.....
T Consensus       143 lalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~  194 (472)
T KOG3824|consen  143 LALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT  194 (472)
T ss_pred             HhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence            5789999999999999999999999999999999999999999999987653

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.47  E-value=0.037  Score=38.29  Aligned_cols=65  Identities=11%  Similarity=0.107  Sum_probs=49.8

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF--PDAYCNLAHCLQIVCDWTDYEARMKK   67 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~--~~a~~~l~~~~~~~~~~~~a~~~~~~   67 (222)
                      .+|++..+.+.++..+...|++++|++.+-..++.++++  ..+.-.+..++..+|.-+.....|++
T Consensus        17 ~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR   83 (90)
T PF14561_consen   17 ANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR   83 (90)
T ss_dssp             HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence            589999999999999999999999999999999999887  66777777777777775544444443

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.47  E-value=0.05  Score=31.01  Aligned_cols=33  Identities=15%  Similarity=0.185  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695         42 PDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus        42 ~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..++.++|.++..+|++++|+..+++++.+..+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~   34 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRER   34 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence            457899999999999999999999999988765

>KOG2796|consensus

Probab=95.41  E-value=0.025  Score=46.89  Aligned_cols=68  Identities=19%  Similarity=0.173  Sum_probs=61.1

Q ss_pred             CHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +-.++.|.+.++.-.+++.+|...|.+.++-||.++.+-+|.+.|++.+|+..+|.+..+.++..+|.
T Consensus       251 ~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~  318 (366)
T KOG2796|consen  251 KIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR  318 (366)
T ss_pred             hHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence            34567788889999999999999999999999999999999999999999999999988888877775

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=95.40  E-value=0.098  Score=43.04  Aligned_cols=70  Identities=16%  Similarity=0.127  Sum_probs=64.0

Q ss_pred             CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFP---DAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~---~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      ..+..|++-|....+.|++++|+..|+......|..+   .+...++.++.+.+++++|+...++.+++.|.+
T Consensus        32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~  104 (254)
T COG4105          32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTH  104 (254)
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Confidence            3578899999999999999999999999999988765   688999999999999999999999999999874

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=95.30  E-value=0.043  Score=31.12  Aligned_cols=34  Identities=21%  Similarity=0.056  Sum_probs=27.4

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHH--HHHHHHhCCCC
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQS--YRTALKLKPDF   41 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~--~~~Al~l~P~~   41 (222)
                      ++.+..+|..+..+|++++|+..  |+-+..++|.|
T Consensus         1 ~e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    1 PEYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             CcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            46788999999999999999999  66888888764

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.24  E-value=0.071  Score=47.77  Aligned_cols=61  Identities=23%  Similarity=0.183  Sum_probs=52.3

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPD--FPDAYCNLAHCLQIVCDWTDYEARMKKL   68 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~--~~~a~~~l~~~~~~~~~~~~a~~~~~~~   68 (222)
                      ..+-..||.+..++|+.+||++.|+..++..|.  +-..+.||..++..++.+.++.+.+.+.
T Consensus       259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            445678999999999999999999999998876  4568999999999999999887655543

The molecular function of this protein is uncertain.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=95.17  E-value=0.15  Score=39.15  Aligned_cols=57  Identities=28%  Similarity=0.283  Sum_probs=43.5

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWT   59 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~   59 (222)
                      +.|++++.-..-|.++...|+|.+|+..|+...+-.|..+.+...++.|+..++|.+
T Consensus        39 LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~   95 (160)
T PF09613_consen   39 LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS   95 (160)
T ss_pred             hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence            457777777777778888888888888888877777777777777777777777743

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=95.16  E-value=0.016  Score=30.19  Aligned_cols=24  Identities=21%  Similarity=0.138  Sum_probs=17.0

Q ss_pred             HHHHHHHHhcccCCCcHHHHHHHH
Q psy17695          9 VGILFSNSSFPSPGNIPEAIQSYR   32 (222)
Q Consensus         9 ~~~~~lg~~l~~~g~~~eA~~~~~   32 (222)
                      .++.++|.++..+|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            456677777777777777777665

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.08  E-value=0.048  Score=49.19  Aligned_cols=70  Identities=23%  Similarity=0.398  Sum_probs=59.9

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFP----DAYCNLAHCLQIVCDWTDYEARMKKLVSI   71 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~----~a~~~l~~~~~~~~~~~~a~~~~~~~~~~   71 (222)
                      ...|+.+...+..|.++...|+.++|++.|++++....+..    ..++.++.++..+.+|++|..++.++.+.
T Consensus       261 ~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~  334 (468)
T PF10300_consen  261 KRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE  334 (468)
T ss_pred             HhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence            35699999999999999999999999999999996554433    45788999999999999999998887753

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1130|consensus

Probab=95.02  E-value=0.017  Score=50.66  Aligned_cols=65  Identities=15%  Similarity=0.201  Sum_probs=55.7

Q ss_pred             HHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695          9 VGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF------PDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~------~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      .++-+||+.|.-+|+|++|+.+-+.=|++.-.+      -.++.|+|+|+..+|+++.|.+.|+..+.+.-
T Consensus       196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAi  266 (639)
T KOG1130|consen  196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAI  266 (639)
T ss_pred             chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHH
Confidence            467799999999999999999998888886443      35899999999999999999999998876544

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=94.84  E-value=0.25  Score=36.06  Aligned_cols=68  Identities=19%  Similarity=0.080  Sum_probs=54.9

Q ss_pred             CHHHHHHHHHhcccCCCcHHHHHHHHHHH-------HhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          7 FKVGILFSNSSFPSPGNIPEAIQSYRTAL-------KLKPDFP----DAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al-------~l~P~~~----~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ++..|..|+.++..+|+|++++..-+++|       +|+-+..    .+.++.+..+..+|..++|...|+.+.+.+.+
T Consensus        54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaE  132 (144)
T PF12968_consen   54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAE  132 (144)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence            46678899999999999999998888888       4555544    35688899999999999999999999988775

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=94.73  E-value=0.18  Score=39.86  Aligned_cols=69  Identities=16%  Similarity=0.115  Sum_probs=48.9

Q ss_pred             CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPD--FPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~--~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +++..+..++++....+++.+|.+.+++..+.+|.  .++....++.++...|.+++|+..++.++...|.
T Consensus       122 ~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg  192 (251)
T COG4700         122 HDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG  192 (251)
T ss_pred             CCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC
Confidence            45666777777777777777777777777777765  3556666677777777777777777777766654

>smart00028 TPR Tetratricopeptide repeats

Probab=94.65  E-value=0.038  Score=28.51  Aligned_cols=31  Identities=16%  Similarity=0.223  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695         43 DAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus        43 ~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      .++.++|.++...+++++|...++++++..|
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            5788999999999999999999998886544

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=94.64  E-value=0.17  Score=35.12  Aligned_cols=57  Identities=14%  Similarity=0.220  Sum_probs=47.2

Q ss_pred             ccCCCcHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695         19 PSPGNIPEAIQSYRTALKLKPD---------FPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus        19 ~~~g~~~eA~~~~~~Al~l~P~---------~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      ...|++.+|++.+.+.+.....         ...+..+++.+....|++++|...+++++++..+.
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~   74 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN   74 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            4678999998888888766322         24678899999999999999999999999988863

>KOG0495|consensus

Probab=94.54  E-value=0.051  Score=50.24  Aligned_cols=62  Identities=18%  Similarity=0.063  Sum_probs=31.3

Q ss_pred             HHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17695          9 VGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVS   70 (222)
Q Consensus         9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~   70 (222)
                      ..|+.-+.+...+++.++|+..++++|+.-|++...|..+|.++-.+++.+.|.+.|..-.+
T Consensus       652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k  713 (913)
T KOG0495|consen  652 RVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK  713 (913)
T ss_pred             hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc
Confidence            34444444455555555555555555555555555555555555555555555544444433

>KOG4340|consensus

Probab=94.48  E-value=0.11  Score=43.94  Aligned_cols=66  Identities=15%  Similarity=0.113  Sum_probs=61.0

Q ss_pred             CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy17695          6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSI   71 (222)
Q Consensus         6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~   71 (222)
                      +.+....+.|-++.+.|++++|++-|..|++...-++..-+|++.+....+++..|.....++++.
T Consensus       142 n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieR  207 (459)
T KOG4340|consen  142 NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIER  207 (459)
T ss_pred             CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            578889999999999999999999999999999999999999999999999999999888777654

>KOG2376|consensus

Probab=94.43  E-value=0.27  Score=44.96  Aligned_cols=75  Identities=16%  Similarity=0.122  Sum_probs=61.0

Q ss_pred             CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhC------------------------------CC-CHHHHHHHHHHH
Q psy17695          4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLK------------------------------PD-FPDAYCNLAHCL   52 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~------------------------------P~-~~~a~~~l~~~~   52 (222)
                      ++.+.......|.++.++|+|++|.+.|+..++-+                              |. ..+..+|.+.++
T Consensus       106 ~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~  185 (652)
T KOG2376|consen  106 DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACIL  185 (652)
T ss_pred             cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHH
Confidence            45666678888999999999999999999986443                              22 445688999999


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHhhhhc
Q psy17695         53 QIVCDWTDYEARMKKLVSIVAEQLDK   78 (222)
Q Consensus        53 ~~~~~~~~a~~~~~~~~~~~~~~l~~   78 (222)
                      ...|+|.+|++.+++++++..+.|..
T Consensus       186 i~~gky~qA~elL~kA~~~~~e~l~~  211 (652)
T KOG2376|consen  186 IENGKYNQAIELLEKALRICREKLED  211 (652)
T ss_pred             HhcccHHHHHHHHHHHHHHHHHhhcc
Confidence            99999999999999998877665443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.42  E-value=0.24  Score=38.68  Aligned_cols=67  Identities=18%  Similarity=0.287  Sum_probs=55.9

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF---PDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~---~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      -.++..+|..|.+.|++++|+++|.++....-..   .+...++..+....++|........++......
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~  105 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK  105 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence            3688999999999999999999999988865332   356788888888999999999888888776654

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG2053|consensus

Probab=94.41  E-value=0.092  Score=49.90  Aligned_cols=74  Identities=12%  Similarity=-0.009  Sum_probs=62.0

Q ss_pred             CCCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      |++.|+.+-+...-|.++.++|+.+||..+++..-.+.+++...+.-+-+||..+++.+++..+|+++..-.|+
T Consensus        36 lkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~  109 (932)
T KOG2053|consen   36 LKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS  109 (932)
T ss_pred             HHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc
Confidence            35678888888888888888999999998888888888888888888888888888888888888888877665

>KOG3785|consensus

Probab=94.35  E-value=0.07  Score=46.06  Aligned_cols=59  Identities=17%  Similarity=0.202  Sum_probs=52.0

Q ss_pred             HHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17695          9 VGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKK   67 (222)
Q Consensus         9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~   67 (222)
                      ..-..+|.++..+|++++|+..|+-+..-+--+.+.+.||+.|+..+|.+.+|.....+
T Consensus        58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~k  116 (557)
T KOG3785|consen   58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEK  116 (557)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhh
Confidence            34566899999999999999999999998877899999999999999999999875544

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=94.18  E-value=0.49  Score=31.78  Aligned_cols=62  Identities=18%  Similarity=0.244  Sum_probs=48.3

Q ss_pred             HHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17695          9 VGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVS   70 (222)
Q Consensus         9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~   70 (222)
                      ..+..-|.-+....+.++|+..++++++..++.++-+.-+|......++|....+.+.-++.
T Consensus         7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~   68 (80)
T PF10579_consen    7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ   68 (80)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556677788999999999999999999999998888888777777777665555544443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=94.10  E-value=0.19  Score=39.69  Aligned_cols=66  Identities=14%  Similarity=0.136  Sum_probs=58.1

Q ss_pred             HHHHHHHHhcccCCCcHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          9 VGILFSNSSFPSPGNIPEAIQSYRTALKL-KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~l-~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .-.+.||+.+.++|++.||...|++++.- --+++..+..+++.+...++..++...++++.+..|.
T Consensus        90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa  156 (251)
T COG4700          90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA  156 (251)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc
Confidence            34678999999999999999999999974 6778999999999999999999999988888876654

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=94.04  E-value=0.29  Score=37.10  Aligned_cols=58  Identities=26%  Similarity=0.164  Sum_probs=48.2

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTD   60 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~   60 (222)
                      +.|+.++...--|.++...|+|.||+..|+...+-.|..+.+...++.|+..++|.+.
T Consensus        39 LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~W   96 (153)
T TIGR02561        39 LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEW   96 (153)
T ss_pred             hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHH
Confidence            4588888888888888888888888888888888888888888888888888888443

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG0545|consensus

Probab=93.77  E-value=0.12  Score=42.40  Aligned_cols=67  Identities=18%  Similarity=0.223  Sum_probs=55.6

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHh--------CCCCHH----------HHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKL--------KPDFPD----------AYCNLAHCLQIVCDWTDYEARMKKLV   69 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l--------~P~~~~----------a~~~l~~~~~~~~~~~~a~~~~~~~~   69 (222)
                      ..++..-|+-+.++|++.||..+|+.|+..        .|..++          .+.|++.|+...+++-++++...+++
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            356778899999999999999999999742        466653          68899999999999999998888888


Q ss_pred             HHHHh
Q psy17695         70 SIVAE   74 (222)
Q Consensus        70 ~~~~~   74 (222)
                      +..|.
T Consensus       258 ~~~~~  262 (329)
T KOG0545|consen  258 RHHPG  262 (329)
T ss_pred             hcCCc
Confidence            76664

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.58  E-value=0.083  Score=30.33  Aligned_cols=29  Identities=21%  Similarity=0.169  Sum_probs=17.9

Q ss_pred             HHHHHHHHhcccCCCcHHHHHHHHHHHHh
Q psy17695          9 VGILFSNSSFPSPGNIPEAIQSYRTALKL   37 (222)
Q Consensus         9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~l   37 (222)
                      +.+..||.+-...++|++|+.-|+++|++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            34556666666666666666666666655

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.58  E-value=0.48  Score=39.78  Aligned_cols=67  Identities=15%  Similarity=0.126  Sum_probs=61.9

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..++..+...+...|+++.++..+++.+..+|-+..+|..+...+...|+...|+..|+++.....+
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~e  219 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAE  219 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhh
Confidence            4678889999999999999999999999999999999999999999999999999999999876443

>KOG1130|consensus

Probab=93.52  E-value=0.11  Score=45.69  Aligned_cols=65  Identities=14%  Similarity=0.126  Sum_probs=51.9

Q ss_pred             HHHHHHHHhcccCCCcHHHHHHHHHHHHh----CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695          9 VGILFSNSSFPSPGNIPEAIQSYRTALKL----KPDF--PDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~l----~P~~--~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      .++.|||+++.-+|+++.|+++|++++.+    .-..  ++.-+.||+.|-...+++.|+.+.++-+.+..
T Consensus       236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq  306 (639)
T KOG1130|consen  236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ  306 (639)
T ss_pred             HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999987755    3333  34567888998888889999888877666544

>KOG0376|consensus

Probab=93.38  E-value=0.069  Score=47.47  Aligned_cols=65  Identities=14%  Similarity=0.082  Sum_probs=59.0

Q ss_pred             HHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695         11 ILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus        11 ~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      .-+-+.-....+.++.|+..|-+|++++|+.+..+.|.+..+.+.+++.+|+....++++..|..
T Consensus         7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~   71 (476)
T KOG0376|consen    7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY   71 (476)
T ss_pred             hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh
Confidence            34556778888999999999999999999999999999999999999999999999999988864

>KOG2471|consensus

Probab=93.17  E-value=0.13  Score=46.19  Aligned_cols=67  Identities=13%  Similarity=-0.070  Sum_probs=57.2

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHH---------hCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALK---------LKP---------DFPDAYCNLAHCLQIVCDWTDYEARMKKLV   69 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~---------l~P---------~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~   69 (222)
                      -..|+|||.++.++|.+..++.+|.+|++         +.|         ...+.++|.|..+...|+.-.|-++|.+++
T Consensus       283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av  362 (696)
T KOG2471|consen  283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAV  362 (696)
T ss_pred             heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHH
Confidence            35689999999999999999999999996         122         245678999999999999999999999998


Q ss_pred             HHHHh
Q psy17695         70 SIVAE   74 (222)
Q Consensus        70 ~~~~~   74 (222)
                      .....
T Consensus       363 ~vfh~  367 (696)
T KOG2471|consen  363 HVFHR  367 (696)
T ss_pred             HHHhc
Confidence            86554

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=92.97  E-value=0.27  Score=40.83  Aligned_cols=66  Identities=9%  Similarity=-0.015  Sum_probs=59.8

Q ss_pred             HHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          9 VGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ....++=.++...++++.|..+-++.+.++|+++.-+-..|.+|.+++....|.+.+...++.+|+
T Consensus       182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~  247 (269)
T COG2912         182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPD  247 (269)
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCC
Confidence            345677788889999999999999999999999999999999999999999999999888877775

>KOG0551|consensus

Probab=92.85  E-value=0.18  Score=43.15  Aligned_cols=64  Identities=23%  Similarity=0.202  Sum_probs=41.8

Q ss_pred             CHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17695          7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVS   70 (222)
Q Consensus         7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~   70 (222)
                      ++..++|.+.+..-+|+|..|+.-..+|++++|.+..+++.=+.|+..+..+.+|...+++.+.
T Consensus       118 navLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~  181 (390)
T KOG0551|consen  118 NAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQ  181 (390)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhh
Confidence            3455666667777777777777777777777777777776666666666666555555554443

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=92.78  E-value=0.088  Score=42.78  Aligned_cols=44  Identities=18%  Similarity=0.287  Sum_probs=39.8

Q ss_pred             CCCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHH
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDA   44 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a   44 (222)
                      |.+.|+....|+.+|....+.|+++.|.+.|++.++++|.+...
T Consensus        22 l~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~g   65 (287)
T COG4976          22 LELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGG   65 (287)
T ss_pred             hhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccc
Confidence            34678999999999999999999999999999999999987654

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=92.60  E-value=0.45  Score=40.05  Aligned_cols=57  Identities=23%  Similarity=0.242  Sum_probs=50.3

Q ss_pred             HHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17695         11 ILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKK   67 (222)
Q Consensus        11 ~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~   67 (222)
                      -+.-+.-+...|++.+|...|..++...|++.++...|+.|+...|+.++|.+.+..
T Consensus       137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~  193 (304)
T COG3118         137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA  193 (304)
T ss_pred             HHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence            445566778999999999999999999999999999999999999999988876543

>KOG2610|consensus

Probab=92.59  E-value=0.36  Score=41.53  Aligned_cols=60  Identities=17%  Similarity=-0.041  Sum_probs=50.4

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKK   67 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~   67 (222)
                      .-.+--++..+.+.|-+++|++.-++|+++||.+.-+...+++++...|+..++.+...+
T Consensus       175 sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~  234 (491)
T KOG2610|consen  175 SYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK  234 (491)
T ss_pred             HHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence            444555677788999999999999999999999999999999999999988887765443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=92.49  E-value=0.43  Score=39.98  Aligned_cols=66  Identities=18%  Similarity=0.126  Sum_probs=53.2

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHhC--CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLK--PD----FPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~--P~----~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ++.+...|+.|...|++++|..+|.+|..+.  -+    -..++.+.+.++... ++++|+.++++++.+..+
T Consensus        35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~  106 (282)
T PF14938_consen   35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYRE  106 (282)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHh
Confidence            4677888999999999999999999998774  12    234677788888777 999999999999987654

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.32  E-value=0.21  Score=42.24  Aligned_cols=52  Identities=12%  Similarity=0.124  Sum_probs=39.6

Q ss_pred             CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695         22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus        22 g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      +++.+|.-.|+.....-|.++..++.++.+.+.+|+|++|++.+++++...+
T Consensus       181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~  232 (290)
T PF04733_consen  181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP  232 (290)
T ss_dssp             TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred             hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence            3688888888887776678888889999999999999999998888764443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=92.23  E-value=0.86  Score=34.20  Aligned_cols=68  Identities=21%  Similarity=0.258  Sum_probs=46.9

Q ss_pred             CHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .......++..+...+++++|+..+.++++..|. ....+.+++.++...++++++...+..+....+.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  234 (291)
T COG0457         166 LAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD  234 (291)
T ss_pred             hHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence            4455555666666777777777777777777777 5777777777777777777777777766666553

>PRK04841 transcriptional regulator MalT; Provisional

Probab=92.22  E-value=0.64  Score=45.09  Aligned_cols=66  Identities=9%  Similarity=0.026  Sum_probs=54.0

Q ss_pred             HHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          9 VGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF------PDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~------~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .++..+|.++...|++++|...+++++++....      ..++.+++.++...|++++|.+.+++++.+...
T Consensus       492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~  563 (903)
T PRK04841        492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEE  563 (903)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            466789999999999999999999999764321      246678899999999999999999888876554

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=92.17  E-value=0.75  Score=34.53  Aligned_cols=67  Identities=24%  Similarity=0.209  Sum_probs=50.3

Q ss_pred             CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHH
Q psy17695          4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAH-CLQIVCDWTDYEARMKKLVS   70 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~-~~~~~~~~~~a~~~~~~~~~   70 (222)
                      .+.....+..+|..+...+++.+++..+..++..++........... ++...++++.+...+.+++.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  158 (291)
T COG0457          91 LPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE  158 (291)
T ss_pred             ccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            45666777788888888888888888888888877777555555655 77788888888887777754

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=92.14  E-value=0.95  Score=36.48  Aligned_cols=62  Identities=8%  Similarity=0.036  Sum_probs=48.7

Q ss_pred             HHHHHHHHHhcccCCCc-------HHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17695          8 KVGILFSNSSFPSPGNI-------PEAIQSYRTALKLKPD--F----PDAYCNLAHCLQIVCDWTDYEARMKKLV   69 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~-------~eA~~~~~~Al~l~P~--~----~~a~~~l~~~~~~~~~~~~a~~~~~~~~   69 (222)
                      +..+..++.+|+.+|+-       ..|.+.|++|++....  .    ....+.+|.+....|++++|...+.+++
T Consensus       118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi  192 (214)
T PF09986_consen  118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVI  192 (214)
T ss_pred             HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            67889999999999994       4566666666655432  2    4567889999999999999999998876

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=92.10  E-value=0.78  Score=39.30  Aligned_cols=73  Identities=14%  Similarity=-0.032  Sum_probs=54.8

Q ss_pred             CCCCCCHHHHHHHHHhcccCCC------------cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGN------------IPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLV   69 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~------------~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~   69 (222)
                      ..+|.+.++|..+.......-.            .+.-+..|++||+.+|++...+..+..+..+..+-++....+++++
T Consensus        13 ~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l   92 (321)
T PF08424_consen   13 RENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELL   92 (321)
T ss_pred             HhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            4688999999888766655533            4566778999999999999988888888877777666666666666


Q ss_pred             HHHHh
Q psy17695         70 SIVAE   74 (222)
Q Consensus        70 ~~~~~   74 (222)
                      ...|+
T Consensus        93 ~~~~~   97 (321)
T PF08424_consen   93 FKNPG   97 (321)
T ss_pred             HHCCC
Confidence            65543

>KOG1308|consensus

Probab=91.97  E-value=0.024  Score=48.40  Aligned_cols=60  Identities=17%  Similarity=0.186  Sum_probs=54.8

Q ss_pred             HhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695         16 SSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus        16 ~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      .-....|++++|++.|.+|++++|..+..+...+.++.++..|..++..+..++.+.++.
T Consensus       122 ~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds  181 (377)
T KOG1308|consen  122 SEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS  181 (377)
T ss_pred             HHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccc
Confidence            334567899999999999999999999999999999999999999999999999888863

>KOG4340|consensus

Probab=91.85  E-value=0.38  Score=40.80  Aligned_cols=62  Identities=16%  Similarity=0.228  Sum_probs=51.9

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEAR   64 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~   64 (222)
                      .+|.+-.++..||.+|....++.+|.+||++.-.+.|.........+..+...|.+.+|...
T Consensus        39 r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV  100 (459)
T KOG4340|consen   39 RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV  100 (459)
T ss_pred             cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            46777888888999999999999999999999999999888888888888888877776643

>PRK04841 transcriptional regulator MalT; Provisional

Probab=91.62  E-value=0.63  Score=45.13  Aligned_cols=64  Identities=8%  Similarity=-0.086  Sum_probs=55.5

Q ss_pred             HHHHHHhcccCCCcHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695         11 ILFSNSSFPSPGNIPEAIQSYRTALKLK------PDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus        11 ~~~lg~~l~~~g~~~eA~~~~~~Al~l~------P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +.++|.++..+|++++|+..|+++++..      +....++..+|.++...|+.++|.+.+++++.+...
T Consensus       694 ~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~  763 (903)
T PRK04841        694 WRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR  763 (903)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence            5689999999999999999999999873      233467889999999999999999999999987754

>PLN03218 maturation of RBCL 1; Provisional

Probab=91.61  E-value=0.93  Score=45.12  Aligned_cols=62  Identities=11%  Similarity=0.170  Sum_probs=35.9

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYEARMKKLV   69 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~   69 (222)
                      ...++.+-.+|.+.|++++|.+.|++..+.+ +.+...|..+...+.+.|++++|...|.+..
T Consensus       579 ~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~  641 (1060)
T PLN03218        579 HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK  641 (1060)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            3455555556666666666666666666554 3345555666666666666666665555544

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=91.60  E-value=0.26  Score=25.44  Aligned_cols=24  Identities=25%  Similarity=0.149  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH
Q psy17695         43 DAYCNLAHCLQIVCDWTDYEARMK   66 (222)
Q Consensus        43 ~a~~~l~~~~~~~~~~~~a~~~~~   66 (222)
                      .++.+++.++...|++++|+..++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            578899999999999999998765

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=91.45  E-value=0.89  Score=38.11  Aligned_cols=67  Identities=15%  Similarity=0.040  Sum_probs=46.7

Q ss_pred             CCHHHHHHHHHhccc-CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy17695          6 FFKVGILFSNSSFPS-PGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIV   72 (222)
Q Consensus         6 ~~~~~~~~lg~~l~~-~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~   72 (222)
                      -....|...|.+-.. .++.+.|...|+++++.-|++...|......+...++.+.+...|++++..+
T Consensus        33 ~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l  100 (280)
T PF05843_consen   33 CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSL  100 (280)
T ss_dssp             S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS
T ss_pred             CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc
Confidence            345667777777444 4555558888888888888888888888888888888888777777766443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=91.40  E-value=0.65  Score=24.43  Aligned_cols=30  Identities=27%  Similarity=0.368  Sum_probs=26.6

Q ss_pred             CCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17695         22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHC   51 (222)
Q Consensus        22 g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~   51 (222)
                      |+.+.|...|+++++..|.++..|...+..
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~   30 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEF   30 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            578899999999999999999999887654

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PLN03218 maturation of RBCL 1; Provisional

Probab=91.26  E-value=1.2  Score=44.30  Aligned_cols=62  Identities=11%  Similarity=0.051  Sum_probs=41.8

Q ss_pred             CHHHHHHHHHhcccCCCcHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17695          7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLV   69 (222)
Q Consensus         7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~   69 (222)
                      +...++.|..+|.+.|++++|+..|++..+.  .|+ ...|..+...+.+.|++++|.+.+++..
T Consensus       683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~  746 (1060)
T PLN03218        683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT-VSTMNALITALCEGNQLPKALEVLSEMK  746 (1060)
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            4566677777777777777777777766543  443 5567777777777777777777666654

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=91.21  E-value=1.9  Score=33.11  Aligned_cols=61  Identities=20%  Similarity=0.197  Sum_probs=53.7

Q ss_pred             HHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17695          9 VGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLV   69 (222)
Q Consensus         9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~   69 (222)
                      .++..+..+=...++.+++...+...-.+.|+.++....-|.++...|+|.+|...++.+.
T Consensus        11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~   71 (160)
T PF09613_consen   11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELE   71 (160)
T ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            4555666666788899999999999999999999999999999999999999998887764

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=91.04  E-value=1.7  Score=37.97  Aligned_cols=64  Identities=16%  Similarity=0.156  Sum_probs=55.5

Q ss_pred             CHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17695          7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVS   70 (222)
Q Consensus         7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~   70 (222)
                      ........+.++...|+++.|..-..++++..|.++.++-....+|...|+|.+......++.+
T Consensus       152 ~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~k  215 (400)
T COG3071         152 TLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRK  215 (400)
T ss_pred             hHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            3455667788999999999999999999999999999999999999999999988776655543

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=91.03  E-value=1.3  Score=42.02  Aligned_cols=65  Identities=11%  Similarity=0.004  Sum_probs=46.9

Q ss_pred             CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17695          5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVS   70 (222)
Q Consensus         5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~   70 (222)
                      +.+...|+.+...|.+.|++++|+..|++..+.  .|+ ..++..+..++...|+++++.+.+.++++
T Consensus       287 ~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~i~~~m~~  353 (697)
T PLN03081        287 EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID-QFTFSIMIRIFSRLALLEHAKQAHAGLIR  353 (697)
T ss_pred             CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence            346778888888888888888888888887664  454 45677777777777777777766655544

>KOG0495|consensus

Probab=90.81  E-value=1.2  Score=41.53  Aligned_cols=73  Identities=15%  Similarity=0.008  Sum_probs=54.5

Q ss_pred             CCCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      |+.-|++...|+.+|.++.++++.+.|..+|...++.-|+....|..|+.+--..|+.-.|...+.++.--.|
T Consensus       678 lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP  750 (913)
T KOG0495|consen  678 LKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP  750 (913)
T ss_pred             HHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC
Confidence            3456888888888888888888888888888888888888888888887776555555555555555444333

>KOG0551|consensus

Probab=90.51  E-value=0.6  Score=39.99  Aligned_cols=70  Identities=16%  Similarity=0.132  Sum_probs=59.8

Q ss_pred             CHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q psy17695          7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFP----DAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQL   76 (222)
Q Consensus         7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~----~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~l   76 (222)
                      .++-+---|+-|++-.+|..|+.+|.++|+-+-.++    -.++|.+.|...+|++..++....+++.+.|.++
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~  153 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHL  153 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchh
Confidence            456666779999999999999999999999965543    4689999999999999999999999998887653

>KOG2376|consensus

Probab=89.21  E-value=1.2  Score=40.88  Aligned_cols=68  Identities=13%  Similarity=0.053  Sum_probs=55.6

Q ss_pred             CHHHHHHHHHhcccCCCcHHHHHHHHHHHHhC-------CCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy17695          7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKLK-------PDF--------PDAYCNLAHCLQIVCDWTDYEARMKKLVSI   71 (222)
Q Consensus         7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~-------P~~--------~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~   71 (222)
                      .-+..+|.+.++...|+|.+|++.+++|+++-       -.+        ......|+++++.+|+-++|.+.|...++.
T Consensus       174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~  253 (652)
T KOG2376|consen  174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR  253 (652)
T ss_pred             hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence            56789999999999999999999999994431       111        125788999999999999999999888876


Q ss_pred             HHh
Q psy17695         72 VAE   74 (222)
Q Consensus        72 ~~~   74 (222)
                      .+.
T Consensus       254 ~~~  256 (652)
T KOG2376|consen  254 NPA  256 (652)
T ss_pred             cCC
Confidence            653

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=88.71  E-value=3.1  Score=35.15  Aligned_cols=69  Identities=19%  Similarity=0.148  Sum_probs=54.6

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHH----------------------------------HHHhCCCCHHHHHHH
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRT----------------------------------ALKLKPDFPDAYCNL   48 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~----------------------------------Al~l~P~~~~a~~~l   48 (222)
                      ..|++.++...|+.+|...|+.++|...+..                                  .+..+|++.++.+.+
T Consensus       163 ~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~l  242 (304)
T COG3118         163 AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALAL  242 (304)
T ss_pred             hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHH
Confidence            4678888999999999999998777665543                                  234579999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHH
Q psy17695         49 AHCLQIVCDWTDYEARMKKLVSI   71 (222)
Q Consensus        49 ~~~~~~~~~~~~a~~~~~~~~~~   71 (222)
                      +..+...|+.++|.+.+-.+++.
T Consensus       243 A~~~~~~g~~e~Ale~Ll~~l~~  265 (304)
T COG3118         243 ADQLHLVGRNEAALEHLLALLRR  265 (304)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh
Confidence            99999999999888766554443

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=88.47  E-value=0.89  Score=36.87  Aligned_cols=59  Identities=20%  Similarity=0.267  Sum_probs=51.5

Q ss_pred             HhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695         16 SSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus        16 ~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .-+.+.+.+.+|+...+.-++-+|.+......|-..+.-.|+|+.|...++-+-++.|+
T Consensus         9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~   67 (273)
T COG4455           9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ   67 (273)
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc
Confidence            35667889999999999999999999999999999999999999999877766666554

>KOG1941|consensus

Probab=88.25  E-value=1.4  Score=38.49  Aligned_cols=65  Identities=12%  Similarity=0.130  Sum_probs=53.8

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLK------PDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIV   72 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~------P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~   72 (222)
                      ....+.++++|+.+|+...|.++.+.|.++.      |-++....-++.+|+..|+.+.|-..|+.+...-
T Consensus       206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m  276 (518)
T KOG1941|consen  206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM  276 (518)
T ss_pred             HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence            3567899999999999999999999998884      4455667788999999999888877777776543

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=88.19  E-value=2.8  Score=35.53  Aligned_cols=64  Identities=19%  Similarity=0.157  Sum_probs=55.0

Q ss_pred             HHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695         11 ILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus        11 ~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..-.+..+...|.+.+|++..+++++++|-+...+..+..++..+||--.+...|++..+.+..
T Consensus       282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vlea  345 (361)
T COG3947         282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEA  345 (361)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHH
Confidence            3445667889999999999999999999999999999999999999988888878777665544

>KOG2396|consensus

Probab=88.04  E-value=1.9  Score=38.97  Aligned_cols=71  Identities=11%  Similarity=-0.077  Sum_probs=58.3

Q ss_pred             CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHh
Q psy17695          4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCD-WTDYEARMKKLVSIVAE   74 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~   74 (222)
                      -+.+...|.+......+.+.+.+--..|.++++.+|++++.|..-+......+. .+.+.+.+.+.++..|+
T Consensus       101 f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npd  172 (568)
T KOG2396|consen  101 FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPD  172 (568)
T ss_pred             cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCC
Confidence            356788888887777777779999999999999999999999988888887776 77788888888877765

>PLN03077 Protein ECB2; Provisional

Probab=87.85  E-value=2.1  Score=41.56  Aligned_cols=65  Identities=11%  Similarity=0.011  Sum_probs=51.6

Q ss_pred             CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17695          5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVS   70 (222)
Q Consensus         5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~   70 (222)
                      +.+...|+.+...|.+.|+.++|+..|++..+.  .|+. .++..+...+...|.++++.+.|+...+
T Consensus       551 ~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~  617 (857)
T PLN03077        551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEE  617 (857)
T ss_pred             CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHH
Confidence            456778999999999999999999999988774  5664 4456666778888899998888887763

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=87.74  E-value=1.3  Score=38.68  Aligned_cols=73  Identities=21%  Similarity=0.229  Sum_probs=58.6

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHh-----CCCC---------------------H---HHHHHHHHHH
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKL-----KPDF---------------------P---DAYCNLAHCL   52 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l-----~P~~---------------------~---~a~~~l~~~~   52 (222)
                      ..+|-+.+++..++.++..+|+.+.|.+..+|||=.     .|..                     -   .+++.....+
T Consensus        34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L  113 (360)
T PF04910_consen   34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSL  113 (360)
T ss_pred             HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999721     1222                     1   2455666677


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHh
Q psy17695         53 QIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus        53 ~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+.|.|.-|.+..+-++.+.|.
T Consensus       114 ~~RG~~rTAlE~~KlLlsLdp~  135 (360)
T PF04910_consen  114 GRRGCWRTALEWCKLLLSLDPD  135 (360)
T ss_pred             HhcCcHHHHHHHHHHHHhcCCC
Confidence            8889999999999888888875

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG1914|consensus

Probab=87.39  E-value=3.1  Score=38.01  Aligned_cols=69  Identities=12%  Similarity=0.098  Sum_probs=61.5

Q ss_pred             CCCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVS   70 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~   70 (222)
                      +..+|.+..+|+.|-.-+..+ -+++....|++.+..-|..+.+|...........+++..+..|.+++.
T Consensus        13 ie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv   81 (656)
T KOG1914|consen   13 IEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV   81 (656)
T ss_pred             HhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            356899999999997777766 999999999999999999999999999999999999998888877764

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=87.28  E-value=2.3  Score=35.58  Aligned_cols=72  Identities=14%  Similarity=-0.002  Sum_probs=60.0

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFP---DAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~---~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .-|.+...|......+...|+.+.|...|++++..-|...   ..|-.+...-...|+++.....++++.+..++
T Consensus        65 ~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~  139 (280)
T PF05843_consen   65 KFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE  139 (280)
T ss_dssp             HHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred             HCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence            3478899999999999999999999999999999877765   57777788888899999999988888888775

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=87.20  E-value=1.5  Score=36.04  Aligned_cols=51  Identities=20%  Similarity=0.127  Sum_probs=28.1

Q ss_pred             CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy17695          4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQI   54 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~   54 (222)
                      .|++...|+.||.+....|+.-+|+=+|-|++...--++.+..||...+.+
T Consensus        12 ~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen   12 LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             -TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            455566666666666666666666666666665544445566666555544

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG3364|consensus

Probab=86.77  E-value=1.4  Score=32.93  Aligned_cols=66  Identities=12%  Similarity=0.091  Sum_probs=45.1

Q ss_pred             HHHHHHHHhcccC---CCcHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          9 VGILFSNSSFPSP---GNIPEAIQSYRTALK-LKPDF-PDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         9 ~~~~~lg~~l~~~---g~~~eA~~~~~~Al~-l~P~~-~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +..++++.++...   .+..+.+.+++..++ -.|.. -+..+.|+..+.++++|+.+..+.+.+++..|+
T Consensus        33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~  103 (149)
T KOG3364|consen   33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN  103 (149)
T ss_pred             HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence            4556667666643   346677788888886 44443 356677777777888888888887777776654

>PRK10941 hypothetical protein; Provisional

Probab=86.32  E-value=2  Score=35.93  Aligned_cols=48  Identities=13%  Similarity=-0.091  Sum_probs=43.8

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLA   49 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~   49 (222)
                      ...|+++.-+-..|.+|.++|.+..|..-++..++..|+++.+-.-..
T Consensus       209 ~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~  256 (269)
T PRK10941        209 QFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRA  256 (269)
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHH
Confidence            568999999999999999999999999999999999999998865443

>KOG2053|consensus

Probab=86.23  E-value=2.7  Score=40.43  Aligned_cols=58  Identities=14%  Similarity=0.185  Sum_probs=50.2

Q ss_pred             CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy17695          4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYE   62 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~   62 (222)
                      .+++-..+..+-.+|.++|++++|..+|++++..+|+ .+.++.+-.++.+.+.+.+-.
T Consensus        73 ~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQ  130 (932)
T KOG2053|consen   73 KGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQ  130 (932)
T ss_pred             CCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHH
Confidence            3567788889999999999999999999999999999 888888888888887776533

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=86.14  E-value=1.1  Score=30.88  Aligned_cols=32  Identities=22%  Similarity=0.277  Sum_probs=29.2

Q ss_pred             CHHHHHHHHHhcccCCCcHHHHHHHHHHHHhC
Q psy17695          7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKLK   38 (222)
Q Consensus         7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~   38 (222)
                      ...+..++|.++...|++++|+..+++|+++.
T Consensus        40 ~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen   40 LAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            35678999999999999999999999999984

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=85.30  E-value=4.6  Score=30.64  Aligned_cols=54  Identities=9%  Similarity=0.043  Sum_probs=47.3

Q ss_pred             HhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17695         16 SSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLV   69 (222)
Q Consensus        16 ~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~   69 (222)
                      ..-...++.+++...+...--+.|+.++....-|.++...|+|.+|...++.+.
T Consensus        18 ~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~   71 (153)
T TIGR02561        18 MYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELL   71 (153)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhh
Confidence            333448999999999999999999999999999999999999999998776654

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=84.98  E-value=4.6  Score=32.22  Aligned_cols=55  Identities=16%  Similarity=0.070  Sum_probs=47.4

Q ss_pred             CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHH
Q psy17695          6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPD----FPDAYCNLAHCLQIVCDWTDY   61 (222)
Q Consensus         6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~----~~~a~~~l~~~~~~~~~~~~a   61 (222)
                      +.++..+.||..|. .-+.+.|+..|-++|++.+.    +++.+..|+.++...++++.|
T Consensus       139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            57889999998888 45899999999999999544    489999999999999998765

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=84.23  E-value=1.6  Score=25.82  Aligned_cols=25  Identities=12%  Similarity=0.170  Sum_probs=22.1

Q ss_pred             HHHHHhcccCCCcHHHHHHHHHHHH
Q psy17695         12 LFSNSSFPSPGNIPEAIQSYRTALK   36 (222)
Q Consensus        12 ~~lg~~l~~~g~~~eA~~~~~~Al~   36 (222)
                      ++|+.+|.++|+.+.|...++..++
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5788999999999999999999885

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG4507|consensus

Probab=83.81  E-value=1.4  Score=40.73  Aligned_cols=65  Identities=9%  Similarity=0.095  Sum_probs=45.7

Q ss_pred             HHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695         11 ILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus        11 ~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      ..+|++++..-|-.-+|-..+.++|.++-..+..++.+|+.+..+.+.++|++.+++++...++.
T Consensus       645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~  709 (886)
T KOG4507|consen  645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKC  709 (886)
T ss_pred             HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCC
Confidence            45666777777777777777777777776667777777777777777777777777777665543

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=83.68  E-value=2.9  Score=25.79  Aligned_cols=32  Identities=16%  Similarity=0.136  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695         43 DAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus        43 ~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +.++.++..+.++|++++|....+.+++..|+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~   33 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPD   33 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence            45788899999999999999999999988886

>KOG2610|consensus

Probab=83.59  E-value=1.9  Score=37.28  Aligned_cols=73  Identities=15%  Similarity=0.071  Sum_probs=62.4

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKL-KPDF---PDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l-~P~~---~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ...|.+..++..--.++.-+|+...-...+++.+-. +|+.   ...+..++.++.+.|-+++|++..++++++++.
T Consensus       131 ~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~  207 (491)
T KOG2610|consen  131 DDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRF  207 (491)
T ss_pred             HhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCc
Confidence            345788888888888899999999999999999988 7776   667788888999999999999999999887764

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.43  E-value=1.6  Score=29.08  Aligned_cols=28  Identities=21%  Similarity=0.342  Sum_probs=17.2

Q ss_pred             HHHHHHHHhcccCCCcHHHHHHHHHHHH
Q psy17695          9 VGILFSNSSFPSPGNIPEAIQSYRTALK   36 (222)
Q Consensus         9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~   36 (222)
                      .-+...++-+-+.|++++|+.+|+.+++
T Consensus         7 ~~~a~~AVe~D~~gr~~eAi~~Y~~aIe   34 (75)
T cd02682           7 RKYAINAVKAEKEGNAEDAITNYKKAIE   34 (75)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            3445556666666776666666666554

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=83.31  E-value=3.5  Score=23.53  Aligned_cols=33  Identities=18%  Similarity=0.098  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695         43 DAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus        43 ~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      +.+..||.+-+...+|++|...|++++.+..+.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l   34 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEEL   34 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence            467889999999999999999999999887763

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF12854 PPR_1: PPR repeat

Probab=83.24  E-value=2.3  Score=23.39  Aligned_cols=27  Identities=15%  Similarity=0.116  Sum_probs=17.2

Q ss_pred             CHHHHHHHHHhcccCCCcHHHHHHHHH
Q psy17695          7 FKVGILFSNSSFPSPGNIPEAIQSYRT   33 (222)
Q Consensus         7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~   33 (222)
                      +...|+.|-..|.+.|+.++|.+.|++
T Consensus         6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    6 DVVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            445566666666667777777666654

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=82.84  E-value=5  Score=31.41  Aligned_cols=53  Identities=19%  Similarity=0.312  Sum_probs=44.6

Q ss_pred             cCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695         20 SPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus        20 ~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      +.+..+..++..++.++-.|+ +..+.+++.++...|+.++|....+++..+.|
T Consensus       123 ~~~~l~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP  175 (193)
T PF11846_consen  123 DPEMLEAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYP  175 (193)
T ss_pred             CHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            344466777788888888895 88999999999999999999998888887777

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>KOG4507|consensus

Probab=82.48  E-value=2  Score=39.68  Aligned_cols=46  Identities=24%  Similarity=0.312  Sum_probs=30.7

Q ss_pred             CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17695          6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHC   51 (222)
Q Consensus         6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~   51 (222)
                      .-|..++.+|.++..+.+.+.|+++|+.|++++|+++..-..|..+
T Consensus       674 sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i  719 (886)
T KOG4507|consen  674 SEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLI  719 (886)
T ss_pred             cCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence            3455666777777777777777777777777777776666555444

>KOG3785|consensus

Probab=82.13  E-value=2.8  Score=36.51  Aligned_cols=65  Identities=17%  Similarity=0.174  Sum_probs=52.1

Q ss_pred             HHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695         10 GILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus        10 ~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      -...|+.++...-.+.|||+.|.+.+.-+|+....-++++.|+.++.-++-+.+.+.-.++..|+
T Consensus       153 dqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pd  217 (557)
T KOG3785|consen  153 DQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPD  217 (557)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCC
Confidence            34455666666668999999999999999999999999999999998888777766666665554

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=82.08  E-value=6.6  Score=32.46  Aligned_cols=50  Identities=18%  Similarity=0.235  Sum_probs=41.2

Q ss_pred             CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHH
Q psy17695          5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPD---AYCNLAHCLQI   54 (222)
Q Consensus         5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~---a~~~l~~~~~~   54 (222)
                      |-...+...++.++.+.+++++|+...++-+++.|+++.   +++..|.++..
T Consensus        68 ~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~  120 (254)
T COG4105          68 PYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFF  120 (254)
T ss_pred             cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Confidence            444678899999999999999999999999999998875   45666666543

>KOG1585|consensus

Probab=81.65  E-value=9.5  Score=31.64  Aligned_cols=65  Identities=15%  Similarity=0.078  Sum_probs=37.1

Q ss_pred             HHHHHHHhcccCCCcHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695         10 GILFSNSSFPSPGNIPEAIQSYRTALKL-----KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus        10 ~~~~lg~~l~~~g~~~eA~~~~~~Al~l-----~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ++-..|.++.++..+.|+.+.|++|..+     .|+-+.+-...+.-..+.-+.++|+..|++++.++.+
T Consensus        73 ayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~  142 (308)
T KOG1585|consen   73 AYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEE  142 (308)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Confidence            3444555666666667777777766655     2444433333333344555666777777766666543

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=81.36  E-value=5.9  Score=34.74  Aligned_cols=69  Identities=13%  Similarity=-0.022  Sum_probs=53.1

Q ss_pred             CCCHHHHHHHHHhccc---CCCcHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHH
Q psy17695          5 PFFKVGILFSNSSFPS---PGNIPEAIQSYRT-ALKLKPDFPDAYCNLAHCLQIV---------CDWTDYEARMKKLVSI   71 (222)
Q Consensus         5 P~~~~~~~~lg~~l~~---~g~~~eA~~~~~~-Al~l~P~~~~a~~~l~~~~~~~---------~~~~~a~~~~~~~~~~   71 (222)
                      ++.+..-+.+|.++-+   .|+.++|+..+.. ..+-++.+++++..+|.++...         ...+.|.+.|+++.++
T Consensus       176 ~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~  255 (374)
T PF13281_consen  176 ANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI  255 (374)
T ss_pred             hcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC
Confidence            4567778889999999   9999999999999 5555788999999999998753         1245566666666655


Q ss_pred             HH
Q psy17695         72 VA   73 (222)
Q Consensus        72 ~~   73 (222)
                      .+
T Consensus       256 ~~  257 (374)
T PF13281_consen  256 EP  257 (374)
T ss_pred             Cc
Confidence            54

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=81.33  E-value=7.4  Score=35.92  Aligned_cols=71  Identities=15%  Similarity=-0.011  Sum_probs=55.6

Q ss_pred             CCCCCHHHHHH--HHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHH
Q psy17695          3 KTPFFKVGILF--SNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKK-LVSIVA   73 (222)
Q Consensus         3 ~~P~~~~~~~~--lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~   73 (222)
                      .+|.+++.+..  +...+...++...+...++.++..+|.+..+..||+..+...+....+...+.+ +....+
T Consensus        60 ~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~  133 (620)
T COG3914          60 INDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSP  133 (620)
T ss_pred             cCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc
Confidence            45666666433  588899999999999999999999999999999999999887776666555544 333333

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=80.99  E-value=3.8  Score=37.08  Aligned_cols=72  Identities=17%  Similarity=0.140  Sum_probs=52.7

Q ss_pred             CCCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCC-------------------------CHHHHHHHHHHHHHc
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPD-------------------------FPDAYCNLAHCLQIV   55 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~-------------------------~~~a~~~l~~~~~~~   55 (222)
                      |.++|+.+.++..|+.  ....-..||+..|++|++....                         ...+...|+.|+.++
T Consensus       195 Lei~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarkl  272 (539)
T PF04184_consen  195 LEINPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKL  272 (539)
T ss_pred             HHhhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHh
Confidence            3567888888866543  2344578888888888865310                         123567789999999


Q ss_pred             CCHHHHHHHHHHHHHHHHh
Q psy17695         56 CDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus        56 ~~~~~a~~~~~~~~~~~~~   74 (222)
                      |+.+||++.++++++..|.
T Consensus       273 Gr~~EAIk~~rdLlke~p~  291 (539)
T PF04184_consen  273 GRLREAIKMFRDLLKEFPN  291 (539)
T ss_pred             CChHHHHHHHHHHHhhCCc
Confidence            9999999999999887664

The molecular function of this protein is uncertain.

>KOG1310|consensus

Probab=80.99  E-value=2.6  Score=38.55  Aligned_cols=71  Identities=17%  Similarity=0.116  Sum_probs=59.3

Q ss_pred             CCCCCHHHHHHHHHhccc---CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695          3 KTPFFKVGILFSNSSFPS---PGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~---~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      ..|.....+.|.+.++.+   .|+.-.|+.-...|++++|....+|+.|+.++.+++.+.+|+.+...+....|
T Consensus       403 ~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~P  476 (758)
T KOG1310|consen  403 YVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFP  476 (758)
T ss_pred             hccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCc
Confidence            346677777788877774   46677778888899999999999999999999999999999998887776666

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	222
3pe3_A	723	Structure Of Human O-Glcnac Transferase And Its Com		2e-71
1w3b_A	388	The Superhelical Tpr Domain Of O-Linked Glcnac Tran		2e-06
2vsy_A	568	Xanthomonas Campestris Putative Ogt (Xcc0866), Apos		1e-04
2vsn_A	568	Structure And Topological Arrangement Of An O-Glcna		2e-04

>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With A Peptide Substrate Length = 723

Iteration: 1
 Score =  265 bits (676), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 134/218 (61%), Positives = 155/218 (71%), Gaps = 21/218 (9%)
Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
           GNIPEAI SYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY+ RMKKLVSIVA+QL+KNRL
Sbjct: 125 GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRL 184
Query: 82  PSVHPHHSMLYPLTHEYRKAIAARHANLCL------------------LKAMRAKVWQAR 123
           PSVHPHHSMLYPL+H +RKAIA RH NLCL                  L   R +V    
Sbjct: 185 PSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVS 244
Query: 124 TESPLFCVQRYAQRLESLYK-VMWDRYSQNLPVTHIT--QAKIAREAEHFLDLSQVPCNG 180
           ++          Q +  ++    ++ +   L     T  + K+  EA HF+DLSQ+PCNG
Sbjct: 245 SDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNG 304
Query: 181 KAADRIHKDGIHILVNMNGYTKGARNEIFALRPAPIQS 218
           KAADRIH+DGIHILVNMNGYTKGARNE+FALRPAPIQ+
Sbjct: 305 KAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQA 342

>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 50/115 (43%), Gaps = 14/115 (12%)
Query: 18  FPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLD 77
           +   G + EAI+ YR AL+LKPDF D Y NLA  L    D       M+  V      L 
Sbjct: 77  YKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGD-------MEGAVQAYVSALQ 129
Query: 78  KNRLPSVHPHHSMLYPLTHEYRKAIA-ARHANLCLLKAMRAKVWQARTESPLFCV 131
            N  P ++   S L  L     KA+     A  C LKA+  +   A   S L CV
Sbjct: 130 YN--PDLYCVRSDLGNLL----KALGRLEEAKACYLKAIETQPNFAVAWSNLGCV 178

>pdb|2VSY|A Chain A, Xanthomonas Campestris Putative Ogt (Xcc0866), Apostructure Length = 568

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 183 ADRIHKDGIHILVNMNGYTKGARNEIFALRPAPIQSSFTA 222
           A  I   GI +L ++ G+  G R E+FALRPAP+Q ++ A
Sbjct: 275 AKHIRHHGIDLLFDLRGWGGGGRPEVFALRPAPVQVNWLA 314

>pdb|2VSN|A Chain A, Structure And Topological Arrangement Of An O-Glcnac Transferase Homolog: Insight Into Molecular Control Of Intracellular Glycosylation Length = 568

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 183 ADRIHKDGIHILVNMNGYTKGARNEIFALRPAPIQSSFTA 222
           A  I   GI +L ++ G+  G R E+FALRPAP+Q ++ A
Sbjct: 275 AKHIRHHGIDLLFDLAGWGGGGRPEVFALRPAPVQVNWLA 314

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	222
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	4e-39
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	9e-11
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	6e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	8e-36
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-07
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	9e-07
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	4e-16
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	6e-06
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	5e-04
3q3e_A	631	HMW1C-like glycosyltransferase; N-glycosylation; 2	1e-08
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-08
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	9e-05
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	4e-08
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	6e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	6e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	6e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-05
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	7e-08
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	9e-08
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	3e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-07
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-07
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-07
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	9e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	8e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-07
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	4e-07
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	4e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	9e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	5e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	7e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	8e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	9e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	6e-07
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	9e-07
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	9e-06
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	7e-07
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-06
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	4e-06
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	1e-06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-04
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-04
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-06
2kat_A	115	Uncharacterized protein; NESG, structure, structur	7e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-06
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-06
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-06
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	5e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-06
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-06
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	4e-06
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	9e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	5e-05
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-05
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-04
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-05
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	5e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	1e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	4e-04
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-04
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	3e-04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	6e-04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	6e-04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	7e-04

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score =  141 bits (357), Expect = 4e-39
 Identities = 132/220 (60%), Positives = 151/220 (68%), Gaps = 21/220 (9%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
           GNIPEAI SYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY+ RMKKLVSIVA+QL+KNRL
Sbjct: 125 GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRL 184

Query: 82  PSVHPHHSMLYPLTHEYRKAIAARHANLCLLKAMRAKVWQARTES--------------- 126
           PSVHPHHSMLYPL+H +RKAIA RH NLCL K                            
Sbjct: 185 PSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVS 244

Query: 127 ------PLFCVQRYAQRLESLYKVMWDRYSQNLPVTHITQAKIAREAEHFLDLSQVPCNG 180
                 P   + +    + +  K     Y+ +       + K+  EA HF+DLSQ+PCNG
Sbjct: 245 SDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNG 304

Query: 181 KAADRIHKDGIHILVNMNGYTKGARNEIFALRPAPIQSSF 220
           KAADRIH+DGIHILVNMNGYTKGARNE+FALRPAPIQ+ +
Sbjct: 305 KAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMW 344

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 59.8 bits (144), Expect = 9e-11
 Identities = 23/66 (34%), Positives = 32/66 (48%)

Query: 97  EYRKAIAARHANLCLLKAMRAKVWQARTESPLFCVQRYAQRLESLYKVMWDRYSQNLPVT 156
           EY         +L  LK +R KVW+ R  SPLF  ++Y   LE LY  MW+ Y+      
Sbjct: 657 EYEDIAVKLGTDLEYLKKVRGKVWKQRISSPLFNTKQYTMELERLYLQMWEHYAAGNKPD 716

Query: 157 HITQAK 162
           H+ +  
Sbjct: 717 HMIKPV 722

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 47.5 bits (112), Expect = 1e-06
 Identities = 14/50 (28%), Positives = 26/50 (52%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSI 71
           G + EA+  Y+ A+++ P F DAY N+ + L+ + D         + + I
Sbjct: 57  GKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI 106

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 42.5 bits (99), Expect = 6e-05
 Identities = 17/32 (53%), Positives = 23/32 (71%)

Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
          GNI EA++ YR AL++ P+F  A+ NLA  LQ
Sbjct: 23 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 54

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score =  131 bits (331), Expect = 8e-36
 Identities = 44/215 (20%), Positives = 80/215 (37%), Gaps = 23/215 (10%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
           G    A  +Y  A +L P+ P     L +  + +CDW   +    ++ + VA       +
Sbjct: 105 GQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA-----QGV 159

Query: 82  PSVHPHHSMLYPLTHEYRKAIAARHANLCLLKAMRAKVWQARTESPL--------FCVQR 133
            +V P   +    +   + A A   A             + R++ PL        F    
Sbjct: 160 GAVEPFAFLSEDASAAEQLACARTRAQAIAASVRPLAPTRVRSKGPLRVGFVSNGFGAHP 219

Query: 134 YAQRLESLYKVMWDR-------YS-QNLPVTHITQAKIAREAEHFLDLSQVPCNGKAADR 185
                 +L++ +  R       +          T      +A    D++ +  +   A  
Sbjct: 220 TGLLTVALFEAL-QRRQPDLQMHLFATSGDDGSTLRTRLAQASTLHDVTALG-HLATAKH 277

Query: 186 IHKDGIHILVNMNGYTKGARNEIFALRPAPIQSSF 220
           I   GI +L ++ G+  G R E+FALRPAP+Q ++
Sbjct: 278 IRHHGIDLLFDLRGWGGGGRPEVFALRPAPVQVNW 312

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 50.6 bits (121), Expect = 1e-07
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 101 AIAARHA-NLCLLKAMRAKVWQARTESPLFCVQRYAQRLESLYKVMWDRY 149
           A A   A +   L A+ A+V   R  S +F +  +A    +L + +  R+
Sbjct: 514 AKAVALASDPAALTALHARVDVLRRASGVFHMDGFADDFGALLQALARRH 563

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 47.9 bits (114), Expect = 9e-07
 Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 7/98 (7%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLD-KNR 80
            + P  +   R A++ +P    A+  LA     + D T  E  +++ +++     +   R
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62

Query: 81  LPSVHPHHSMLYPLTHEYRKAIAAR------HANLCLL 112
           L  V              ++A  A          L   
Sbjct: 63  LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHA 100

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 75.4 bits (185), Expect = 4e-16
 Identities = 22/138 (15%), Positives = 40/138 (28%), Gaps = 8/138 (5%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
            +  EA++ +  A  L P +P+        L+ +   T       K       +  ++ L
Sbjct: 272 ESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKP----KKLQSML 327

Query: 82  PSVHPHHSMLYPLTHEYRKAIAARHANLCLLKAMRAKVWQARTESPLFCVQRYAQRLES- 140
            S+ P H  L P      ++ + +   L L      +         L  V       E  
Sbjct: 328 GSLRPAH--LGPCGDGRYQSASGQKMTLELKPLSTLQPGVNSGTVVLGKVVFSLTTEEKV 385

Query: 141 -LYKVMWDRYSQNLPVTH 157
                + D       V  
Sbjct: 386 PFTFGLVDSDGPCYAVMV 403

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 45.4 bits (107), Expect = 6e-06
 Identities = 8/28 (28%), Positives = 13/28 (46%)

Query: 26  EAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           EA      A+KL+P+  +A+  L     
Sbjct: 121 EAEVLLSKAVKLEPELVEAWNQLGEVYW 148

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 39.2 bits (91), Expect = 5e-04
 Identities = 22/146 (15%), Positives = 52/146 (35%), Gaps = 9/146 (6%)

Query: 15  NSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYE-ARMKKLVSIV- 72
           +S      ++ ++++  + A+++      ++  L +    +   T       ++ +S   
Sbjct: 186 DSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYA 245

Query: 73  -AEQLDKNRLPSVHPHHSM--LYPLTHEYRKAIAA-RHANLCLLKAMRAKVWQARTESPL 128
            AE++D+    +   H +   L+     Y +A+     A    L     +  Q   +  L
Sbjct: 246 QAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQA--AALDPAWPEPQQRE-QQLL 302

Query: 129 FCVQRYAQRLESLYKVMWDRYSQNLP 154
             + R    LES  K    +    L 
Sbjct: 303 EFLSRLTSLLESKGKTKPKKLQSMLG 328

>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A Length = 631

 Score = 53.4 bits (128), Expect = 1e-08
 Identities = 27/241 (11%), Positives = 57/241 (23%), Gaps = 42/241 (17%)

Query: 18  FPSPGNIPEAIQSYRTALKLKPDF-------PDAYCNLAHCLQIVCDWTDYEARMK---- 66
             S  ++ +    Y     +  +        P+   +L   LQ         A  K    
Sbjct: 143 DSSKSSLIKFCILYLPESNVNLNLDVMWNISPELCASLCFALQSPRFIGTSTAFNKRATI 202

Query: 67  --KLVSIVAEQLDKNRLPSVHPHHSMLY------PLTHEYRKAIA---ARHANLCLLKAM 115
                  + +  + N +PS   H   ++         H+ ++A+     RH         
Sbjct: 203 LQWFPRHLDQLKNLNNIPSAISHDVYMHCSYDTSVNKHDVKRALNHVIRRHIESEYGWKD 262

Query: 116 RAKVWQARTE---------SPLFC---VQRYAQRLESLYKVMWDRYSQNLPVTHITQAKI 163
           R                          + R         +   + +      +       
Sbjct: 263 RDVAHIGYRNNKPVMVVLLEHFHSAHSIYRTHSTSMIAAR---EHFYLIGLGSPSVDQAG 319

Query: 164 AREAEHFLDLSQVPCNGKAADRIHK----DGIHILVNMNGYTKGARNEIFALRPAPIQSS 219
               + F  ++      +  + I      +G  I    +             R APIQ+ 
Sbjct: 320 QEVFDEFHLVAGDN-MKQKLEFIRSVCESNGAAIFYMPSIGMDMTTIFASNTRLAPIQAI 378

Query: 220 F 220
            
Sbjct: 379 A 379

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 51.4 bits (124), Expect = 3e-08
 Identities = 10/32 (31%), Positives = 13/32 (40%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           G + EA+  Y  AL+  P   D     A  L 
Sbjct: 165 GRLDEALAQYAKALEQAPKDLDLRVRYASALL 196

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 49.1 bits (118), Expect = 2e-07
 Identities = 6/32 (18%), Positives = 14/32 (43%)

Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
          G +  A+++ +T +   P +   Y  L+    
Sbjct: 53 GLVNPALENGKTLVARTPRYLGGYMVLSEAYV 84

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 48.7 bits (117), Expect = 3e-07
 Identities = 4/32 (12%), Positives = 12/32 (37%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           G + +A+   + A ++ P +   +        
Sbjct: 98  GYLEQALSVLKDAERVNPRYAPLHLQRGLVYA 129

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 48.3 bits (116), Expect = 3e-07
 Identities = 10/32 (31%), Positives = 13/32 (40%)

Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
          G    A+  +  ALK  P  P+A   LA    
Sbjct: 19 GRYDAALTLFERALKENPQDPEALYWLARTQL 50

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 41.0 bits (97), Expect = 9e-05
 Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 1/32 (3%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           G   +A  S + AL L+   P+    LA    
Sbjct: 132 GERDKAEASLKQALALED-TPEIRSALAELYL 162

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 48.5 bits (117), Expect = 4e-08
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
          G+  EAI+ Y+ AL+L P+  +A+ NL +   
Sbjct: 23 GDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 54

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 47.8 bits (115), Expect = 6e-08
 Identities = 13/32 (40%), Positives = 20/32 (62%)

Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
          G+  EAI+ Y+ AL+L P+  +A  NL +  Q
Sbjct: 57 GDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 51.1 bits (123), Expect = 6e-08
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           GN   A+  + TAL L+ D   +   L HC++
Sbjct: 284 GNFENAVDYFHTALGLRRDDTFSVTMLGHCIE 315

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 45.7 bits (109), Expect = 4e-06
 Identities = 12/86 (13%), Positives = 27/86 (31%), Gaps = 3/86 (3%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
            N   A + +  AL + P+ P     +        +W   E      +  +    ++  +
Sbjct: 173 NNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTV 232

Query: 82  PSVHPHHSML---YPLTHEYRKAIAA 104
               P  + L        +Y +A+  
Sbjct: 233 DKWEPLLNNLGHVCRKLKKYAEALDY 258

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 45.0 bits (107), Expect = 6e-06
 Identities = 8/32 (25%), Positives = 12/32 (37%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
               EA+  +R AL L P     Y  + +   
Sbjct: 250 KKYAEALDYHRQALVLIPQNASTYSAIGYIHS 281

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 5/28 (17%), Positives = 9/28 (32%)

Query: 26  EAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
            A +    A  L+  +  A+    H   
Sbjct: 109 HARRYLSKATTLEKTYGPAWIAYGHSFA 136

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 5/32 (15%), Positives = 10/32 (31%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
               +A+ +Y TA +L          +     
Sbjct: 139 SEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYG 170

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 48.5 bits (117), Expect = 7e-08
 Identities = 13/32 (40%), Positives = 20/32 (62%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           G+  EAI+ Y+ AL+L P+  +A  NL +  Q
Sbjct: 91  GDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 48.2 bits (116), Expect = 9e-08
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
          G+  EAI+ Y+ AL+L P+  +A+ NL +   
Sbjct: 23 GDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 54

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 47.0 bits (113), Expect = 3e-07
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
          G+  EAI+ Y+ AL+L P+  +A+ NL +   
Sbjct: 57 GDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 51.0 bits (123), Expect = 8e-08
 Identities = 19/32 (59%), Positives = 25/32 (78%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           G I  AI +YR A++L+P FPDAYCNLA+ L+
Sbjct: 251 GLIDLAIDTYRRAIELQPHFPDAYCNLANALK 282

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.1 bits (118), Expect = 3e-07
 Identities = 12/32 (37%), Positives = 21/32 (65%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           G + EA+  Y+ A+++ P F DAY N+ + L+
Sbjct: 353 GKLQEALMHYKEAIRISPTFADAYSNMGNTLK 384

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 48.7 bits (117), Expect = 5e-07
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           G++ EA   Y TAL+L P   D+  NLA+  +
Sbjct: 285 GSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 48.3 bits (116), Expect = 5e-07
 Identities = 17/32 (53%), Positives = 23/32 (71%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           GNI EA++ YR AL++ P+F  A+ NLA  LQ
Sbjct: 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 350

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 47.5 bits (114), Expect = 1e-06
 Identities = 9/32 (28%), Positives = 13/32 (40%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
                A+ +Y  AL L P+    + NLA    
Sbjct: 217 RIFDRAVAAYLRALSLSPNHAVVHGNLACVYY 248

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 47.2 bits (113), Expect = 1e-06
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           G++  A+Q+Y +AL+  PD      +L + L+
Sbjct: 115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK 146

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 47.2 bits (113), Expect = 1e-06
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           G I  AI  +  A+ L P+F DAY NL + L+
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK 214

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 47.2 bits (113), Expect = 1e-06
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           G + EAI+ YR AL+LKPDF D Y NLA  L 
Sbjct: 81  GQLQEAIEHYRHALRLKPDFIDGYINLAAALV 112

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 46.4 bits (111), Expect = 2e-06
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           G + EA   Y  A++ +P+F  A+ NL     
Sbjct: 149 GRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 180

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 43.3 bits (103), Expect = 3e-05
 Identities = 7/32 (21%), Positives = 13/32 (40%)

Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
            +  +      A+K  P   +AY NL +  +
Sbjct: 47 RRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK 78

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 42.1 bits (100), Expect = 7e-05
 Identities = 5/32 (15%), Positives = 10/32 (31%)

Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
          G+   A +      + +PD       L+    
Sbjct: 13 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHF 44

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 48.6 bits (117), Expect = 2e-07
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           G   EAI S++ AL L+P+    +  +A   +
Sbjct: 124 GRFDEAIDSFKIALGLRPNEGKVHRAIAFSYE 155

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 48.2 bits (116), Expect = 2e-07
 Identities = 5/32 (15%), Positives = 8/32 (25%)

Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
          G +    +    +L   PD       L     
Sbjct: 56 GAVDRGTELLERSLADAPDNVKVATVLGLTYV 87

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 47.8 bits (115), Expect = 3e-07
 Identities = 4/32 (12%), Positives = 7/32 (21%)

Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
          G   +A+              D   +L     
Sbjct: 22 GRYSQAVMLLEQVYDADAFDVDVALHLGIAYV 53

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 46.7 bits (112), Expect = 9e-07
 Identities = 4/32 (12%), Positives = 7/32 (21%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
                A+       +  P   +    L   L 
Sbjct: 90  QKYDLAVPLLIKVAEANPINFNVRFRLGVALD 121

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 8/32 (25%), Positives = 10/32 (31%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
                AI+    A +L P    A   LA    
Sbjct: 442 EKFNAAIKLLTKACELDPRSEQAKIGLAQLKL 473

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 45.9 bits (109), Expect = 5e-06
 Identities = 6/47 (12%), Positives = 15/47 (31%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKL 68
           G+   AI+ Y  A +L+      +  +   +          ++    
Sbjct: 392 GDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQ 438

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 45.9 bits (109), Expect = 5e-06
 Identities = 8/32 (25%), Positives = 13/32 (40%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
            +   A + ++ A  L P+    Y  LA  L 
Sbjct: 324 QDYKNAKEDFQKAQSLNPENVYPYIQLACLLY 355

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 45.1 bits (107), Expect = 7e-06
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           N  EAI+ Y+ A++L P+ P  Y N++ C  
Sbjct: 39 KNFNEAIKYYQYAIELDPNEPVFYSNISACYI 70

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 45.1 bits (107), Expect = 8e-06
 Identities = 6/32 (18%), Positives = 9/32 (28%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           G   E+   +       P  P+     A  L 
Sbjct: 358 GKFTESEAFFNETKLKFPTLPEVPTFFAEILT 389

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 44.7 bits (106), Expect = 9e-06
 Identities = 8/33 (24%), Positives = 15/33 (45%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQI 54
            N  E  + ++ A+ L P++P  Y +      I
Sbjct: 290 ENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFI 322

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           G++ + I+    AL++KPD   A    A   +
Sbjct: 73  GDLEKVIEFTTKALEIKPDHSKALLRRASANE 104

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 5/32 (15%), Positives = 9/32 (28%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
             I EAI+ +  +  L     +          
Sbjct: 476 EKIDEAIELFEDSAILARTMDEKLQATTFAEA 507

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 5/44 (11%)

Query: 10  GILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           G   +N          EA+ +Y  AL + P +     N+A    
Sbjct: 213 GATLANG-----NRPQEALDAYNRALDINPGYVRVMYNMAVSYS 251

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 5/44 (11%)

Query: 10  GILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           G+L++ S      N   A  + R A++L+PD    +  L   L 
Sbjct: 179 GVLYNLS-----NNYDSAAANLRRAVELRPDDAQLWNKLGATLA 217

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 5/32 (15%), Positives = 10/32 (31%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
               E       AL++ P+    + +L     
Sbjct: 152 NEYRECRTLLHAALEMNPNDAQLHASLGVLYN 183

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 7/32 (21%), Positives = 9/32 (28%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
                AI +   A  L P     +  LA    
Sbjct: 69  EKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 45.7 bits (109), Expect = 4e-06
 Identities = 6/32 (18%), Positives = 14/32 (43%)

Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           N+ EA  ++    +  P+  +A+ +L     
Sbjct: 35 ANLAEAALAFEAVCQAAPEREEAWRSLGLTQA 66

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 41.9 bits (99), Expect = 8e-05
 Identities = 2/29 (6%), Positives = 7/29 (24%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAH 50
                A +    A+ ++          + 
Sbjct: 254 SQYDLAAKQLVRAIYMQVGGTTPTGEASR 282

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 7/40 (17%), Positives = 11/40 (27%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 61
            N   A+ S R  L  +P +             + D    
Sbjct: 103 HNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQ 142

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 47.4 bits (114), Expect = 2e-07
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
          G+  EAI+ Y+ AL+L P   +A+ NL +   
Sbjct: 15 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 46

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 46.6 bits (112), Expect = 4e-07
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           G+  EAI+ Y+ AL+L P   +A+ NL +   
Sbjct: 83  GDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 114

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 46.6 bits (112), Expect = 4e-07
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
          G+  EAI+ Y+ AL+L P   +A+ NL +   
Sbjct: 49 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 5/44 (11%)

Query: 10  GILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           G   +N          EA+ +YR AL+L+P +  +  NL     
Sbjct: 258 GATLANG-----NQSEEAVAAYRRALELQPGYIRSRYNLGISCI 296

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 47.7 bits (114), Expect = 9e-07
 Identities = 11/32 (34%), Positives = 13/32 (40%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
                AI + R  L+LKPD   A   LA    
Sbjct: 112 EQELLAISALRRCLELKPDNQTALMALAVSFT 143

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 5/44 (11%)

Query: 10  GILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           G+LF+ S     G   +A+  +  AL ++P+    +  L   L 
Sbjct: 224 GVLFNLS-----GEYDKAVDCFTAALSVRPNDYLLWNKLGATLA 262

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 5/36 (13%), Positives = 12/36 (33%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCD 57
           G   EA++ +  AL ++              + +  
Sbjct: 299 GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWS 334

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 45.4 bits (108), Expect = 6e-06
 Identities = 7/32 (21%), Positives = 15/32 (46%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           G++P A+  +  A++  P   +A+  L     
Sbjct: 78  GDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA 109

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 9/40 (22%), Positives = 13/40 (32%), Gaps = 2/40 (5%)

Query: 16  SSFPSPGNIPEAIQSYRTALKLKPDFPDA--YCNLAHCLQ 53
            S  S     E  + +  A++L P   D    C L     
Sbjct: 189 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN 228

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 4/31 (12%), Positives = 8/31 (25%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCL 52
               +A +  R  L+  P +           
Sbjct: 146 SLQRQACEILRDWLRYTPAYAHLVTPAEEGA 176

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 49.5 bits (118), Expect = 3e-07
 Identities = 7/32 (21%), Positives = 11/32 (34%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
                AI     +L + P+   A   L   L+
Sbjct: 564 KIPGLAITHLHESLAISPNEIMASDLLKRALE 595

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 5/47 (10%)

Query: 7   FKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
             VGI +          I EA + +  +  + P F  A+   AH   
Sbjct: 377 LAVGIYYLCV-----NKISEARRYFSKSSTMDPQFGPAWIGFAHSFA 418

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 45.2 bits (107), Expect = 8e-06
 Identities = 7/32 (21%), Positives = 11/32 (34%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           GNI  A +  +++  L    P     L     
Sbjct: 455 GNILLANEYLQSSYALFQYDPLLLNELGVVAF 486

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 9/32 (28%), Positives = 12/32 (37%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           G   +AI +Y TA +L       Y  L     
Sbjct: 421 GEHDQAISAYTTAARLFQGTHLPYLFLGMQHM 452

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 42.5 bits (100), Expect = 5e-05
 Identities = 5/32 (15%), Positives = 10/32 (31%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
                AI +    L L  +  + +  +A    
Sbjct: 530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYL 561

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 3/37 (8%), Positives = 8/37 (21%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDW 58
           G   +        +   P+    +  +      V   
Sbjct: 353 GEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKI 389

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
          GN  +A    R AL++ P   DA+  LA   Q
Sbjct: 51 GNTEQAKVPLRKALEIDPSSADAHAALAVVFQ 82

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 6/32 (18%), Positives = 13/32 (40%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
               +A + +  +L+L  + P     +A  L 
Sbjct: 155 KKPAQAKEYFEKSLRLNRNQPSVALEMADLLY 186

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 7/32 (21%), Positives = 8/32 (25%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
                A + YR AL           N    L 
Sbjct: 85  MEPKLADEEYRKALASDSRNARVLNNYGGFLY 116

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 41.5 bits (98), Expect = 8e-05
 Identities = 8/34 (23%), Positives = 11/34 (32%), Gaps = 2/34 (5%)

Query: 22  GNIPEAIQSYRTALK--LKPDFPDAYCNLAHCLQ 53
               EA Q    A +  L P+    + NL     
Sbjct: 119 KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSL 152

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 5/44 (11%)

Query: 10  GILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           G   +N          EA+++Y  AL+++P F  +  NL     
Sbjct: 254 GATLANG-----DRSEEAVEAYTRALEIQPGFIRSRYNLGISCI 292

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 9/32 (28%), Positives = 14/32 (43%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
            N   AI + +  L+L+P+   A   LA    
Sbjct: 113 ENEQAAIVALQRCLELQPNNLKALMALAVSYT 144

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 5/44 (11%)

Query: 10  GILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           G+LF  S     G    AI ++  AL ++P+    +  L   L 
Sbjct: 220 GVLFHLS-----GEFNRAIDAFNAALTVRPEDYSLWNRLGATLA 258

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 44.7 bits (106), Expect = 9e-06
 Identities = 7/32 (21%), Positives = 12/32 (37%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           G++P  I     A+   P   +A+  L     
Sbjct: 79  GDLPVTILFMEAAILQDPGDAEAWQFLGITQA 110

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 5/52 (9%), Positives = 15/52 (28%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA 73
            +  +A ++ +  +K  P +     N      +    +        L  +  
Sbjct: 147 SHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKE 198

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 7/31 (22%), Positives = 13/31 (41%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCL 52
           G   EA+ ++ TAL L+    +        +
Sbjct: 295 GAYREAVSNFLTALSLQRKSRNQQQVPHPAI 325

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 47.9 bits (115), Expect = 6e-07
 Identities = 7/32 (21%), Positives = 12/32 (37%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           G + EA+  +    +  P   DA+ N      
Sbjct: 173 GMLDEALSQFAAVTEQDPGHADAFYNAGVTYA 204

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 47.1 bits (113), Expect = 9e-07
 Identities = 6/32 (18%), Positives = 12/32 (37%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
                A+   + A++L  +  +A      CL 
Sbjct: 139 EQPKLALPYLQRAVELNENDTEARFQFGMCLA 170

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 46.7 bits (112), Expect = 1e-06
 Identities = 7/32 (21%), Positives = 11/32 (34%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
             +  A+  Y  AL+L      AY    +   
Sbjct: 71  NELERALAFYDKALELDSSAATAYYGAGNVYV 102

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 46.7 bits (112), Expect = 1e-06
 Identities = 6/32 (18%), Positives = 12/32 (37%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
            N  +A++    A+ ++PD   A         
Sbjct: 207 ENREKALEMLDKAIDIQPDHMLALHAKKLLGH 238

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 46.4 bits (111), Expect = 2e-06
 Identities = 7/32 (21%), Positives = 11/32 (34%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
               EA   +  AL+   +  D +  L   L 
Sbjct: 105 EMYKEAKDMFEKALRAGMENGDLFYMLGTVLV 136

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 44.4 bits (106), Expect = 9e-06
 Identities = 7/32 (21%), Positives = 16/32 (50%)

Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
          G+  +A +++  A++   +    Y N A+ L 
Sbjct: 37 GDYEKAAEAFTKAIEENKEDAIPYINFANLLS 68

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 47.3 bits (113), Expect = 7e-07
 Identities = 9/32 (28%), Positives = 12/32 (37%)

Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           +  +A  S   ALK  P    A+   A   Q
Sbjct: 22 QDYRQATASIEDALKSDPKNELAWLVRAEIYQ 53

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 14/54 (25%), Positives = 20/54 (37%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ 75
           G    A    + +L  +P FP A+  LA    +     D +   KK  S V   
Sbjct: 127 GQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVL 180

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 44.9 bits (107), Expect = 4e-06
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
              +A +S+R AL +KPD  +   N    L 
Sbjct: 56 KVNDKAQESFRQALSIKPDSAEINNNYGWFLC 87

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 7/34 (20%), Positives = 10/34 (29%), Gaps = 2/34 (5%)

Query: 22  GNIPEAIQSYRTALK--LKPDFPDAYCNLAHCLQ 53
               E++  +  AL     P    A  N   C  
Sbjct: 91  NRPAESMAYFDKALADPTYPTPYIANLNKGICSA 124

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 10/32 (31%), Positives = 10/32 (31%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
            N  EA      A KL P    A   LA    
Sbjct: 429 ENFIEATNLLEKASKLDPRSEQAKIGLAQMKL 460

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 6/31 (19%), Positives = 15/31 (48%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCL 52
            +  +A++ Y  A++L+      Y  +A  +
Sbjct: 386 NDFDKALKQYDLAIELENKLDGIYVGIAPLV 416

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 8/32 (25%), Positives = 16/32 (50%)

Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
          G++ + ++    AL+LKPD+       A   +
Sbjct: 53 GDLKKVVEMSTKALELKPDYSKVLLRRASANE 84

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 42.8 bits (101), Expect = 5e-05
 Identities = 5/32 (15%), Positives = 10/32 (31%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
               +    +  A +  P+ P+     A  L 
Sbjct: 352 NKFDDCETLFSEAKRKFPEAPEVPNFFAEILT 383

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 42.0 bits (99), Expect = 8e-05
 Identities = 8/32 (25%), Positives = 13/32 (40%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
            N  +A + +  A +L P+    Y  LA    
Sbjct: 318 QNYDQAGKDFDKAKELDPENIFPYIQLACLAY 349

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 7/33 (21%), Positives = 11/33 (33%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQI 54
            +  E    +  ALKL  +    Y +      I
Sbjct: 284 NDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFI 316

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 5/30 (16%), Positives = 10/30 (33%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHC 51
            +I EAI  +  +  L     +    +   
Sbjct: 463 EDIDEAITLFEESADLARTMEEKLQAITFA 492

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 6/32 (18%), Positives = 13/32 (40%)

Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           N   A+  +   ++  PD+   Y +L    +
Sbjct: 21 DNASRALALFEELVETDPDYVGTYYHLGKLYE 52

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 47.2 bits (113), Expect = 1e-06
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
            + P A+++Y   +K  P+    Y N A  L 
Sbjct: 153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALA 184

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 44.9 bits (107), Expect = 5e-06
 Identities = 10/32 (31%), Positives = 14/32 (43%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
            + PEAI     A++  P+F  AY   A    
Sbjct: 187 MSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 218

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 2/28 (7%), Positives = 7/28 (25%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLA 49
                A+++   A     +  +      
Sbjct: 221 KEYASALETLDAARTKDAEVNNGSSARE 248

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 39.5 bits (93), Expect = 4e-04
 Identities = 5/32 (15%), Positives = 11/32 (34%)

Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
          G    AI +   A++   +    Y  ++    
Sbjct: 52 GEYETAISTLNDAVEQGREMRADYKVISKSFA 83

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 9/32 (28%), Positives = 12/32 (37%)

Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
               A+   R AL   P +  A+  L   LQ
Sbjct: 33 EQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ 64

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 40.0 bits (94), Expect = 7e-05
 Identities = 3/46 (6%), Positives = 8/46 (17%)

Query: 26 EAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSI 71
             +     L    D       L         +      ++  +  
Sbjct: 3  AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF 48

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 9/32 (28%), Positives = 14/32 (43%)

Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
          G    A   +  AL ++PD P+ +  L   L 
Sbjct: 57 GLRALARNDFSQALAIRPDMPEVFNYLGIYLT 88

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           GN   A +++ + L+L P +  A+ N    L 
Sbjct: 91  GNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 122

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 2/32 (6%), Positives = 4/32 (12%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
             +            L     +    L     
Sbjct: 195 TLMERLKADATDNTSLAEHLSETNFYLGKYYL 226

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 4/32 (12%), Positives = 10/32 (31%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           G++  A   ++ A+         +      L 
Sbjct: 229 GDLDSATALFKLAVANNVHNFVEHRYALLELS 260

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 6/32 (18%), Positives = 8/32 (25%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           G    A        +  P+ P     L    Q
Sbjct: 125 GRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQ 156

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 18/85 (21%), Positives = 27/85 (31%), Gaps = 10/85 (11%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
           G   +A+QSY     +  + P    + A C   + D    E+         A  L     
Sbjct: 66  GLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYS-----ARALAAA-- 118

Query: 82  PSVHPHHSMLYPLTHEYRKAIAARH 106
               P H  L        +A+ AR 
Sbjct: 119 ---QPAHEALAARAGAMLEAVTARK 140

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 6/39 (15%), Positives = 13/39 (33%)

Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 60
          G   +A + ++    L       +  L  C Q +  +  
Sbjct: 32 GKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQ 70

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 9/39 (23%), Positives = 12/39 (30%)

Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 60
          G    A+      + LK DF  A     H L       +
Sbjct: 51 GKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDE 89

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 4/45 (8%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDW----TDYE 62
               EAI+     L+++PD  +A  + A    I   +     DYE
Sbjct: 286 EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYE 330

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 45.7 bits (109), Expect = 4e-06
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           G   +AI   + A KLK D  +A+  ++    
Sbjct: 168 GEPRKAISDLKAASKLKSDNTEAFYKISTLYY 199

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 8/32 (25%), Positives = 13/32 (40%)

Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
          G + +A+  +  A+   PD   AY   A    
Sbjct: 17 GQLADALSQFHAAVDGDPDNYIAYYRRATVFL 48

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 7/32 (21%), Positives = 10/32 (31%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
               EAIQ Y  A +   +       L    +
Sbjct: 320 EMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 6/33 (18%), Positives = 13/33 (39%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQI 54
           G+   ++   R  LKL  D    + +     ++
Sbjct: 202 GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKL 234

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 4/36 (11%)

Query: 22  GNIPEAIQSYRTALKLKPDFPD----AYCNLAHCLQ 53
           G   +A   Y + +K +P   +    +   + HC  
Sbjct: 248 GRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFS 283

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 5/32 (15%), Positives = 9/32 (28%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
            +   AI      L++     +     A C  
Sbjct: 134 ADYTAAITFLDKILEVCVWDAELRELRAECFI 165

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 5/88 (5%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYE---ARMKKLVSIVAEQLDK 78
               +A  S+   L+LKP+    Y   A         T         +KL+ + A    K
Sbjct: 156 KEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAK 215

Query: 79  NRLPSVHPHHSM--LYPLTHEYRKAIAA 104
            +   +  +  +   Y +  +  KA AA
Sbjct: 216 YKDELIEANEYIAYYYTINRDKVKADAA 243

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 8/32 (25%), Positives = 11/32 (34%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           GN P AIQ     ++     P  +  L     
Sbjct: 122 GNFPLAIQYMEKQIRPTTTDPKVFYELGQAYY 153

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 7/32 (21%), Positives = 13/32 (40%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
            +  +A  +++  L L P    A   L   L+
Sbjct: 235 RDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 8/32 (25%), Positives = 11/32 (34%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           G    AIQ Y+ A+       D Y  +     
Sbjct: 88  GQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFY 119

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 5/48 (10%)

Query: 6  FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           F+       +      N  EAI+ +      K + P  Y   A C  
Sbjct: 6  EFRYADFLFKN-----NNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYY 48

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 9/92 (9%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSI---------V 72
           G    A+      ++LK DF  A     H L       + E   KK++            
Sbjct: 74  GKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEA 133

Query: 73  AEQLDKNRLPSVHPHHSMLYPLTHEYRKAIAA 104
             QL K+         ++    + +Y  AIA 
Sbjct: 134 QSQLIKSDEMQRLRSQALNAFGSGDYTAAIAF 165

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           G   +AI   + A KLK D  +A+  ++    
Sbjct: 191 GEPRKAISDLKAASKLKNDNTEAFYKISTLYY 222

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 9/39 (23%), Positives = 17/39 (43%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 60
               EAI+     L+++PD  +A  + A    I   + +
Sbjct: 309 EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDE 347

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 8/32 (25%), Positives = 13/32 (40%)

Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
          G + +A+  +  A+   PD   AY   A    
Sbjct: 40 GQLADALSQFHAAVDGDPDNYIAYYRRATVFL 71

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 7/46 (15%), Positives = 16/46 (34%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKK 67
           G+   ++   R  LKL  D    + +     ++       E  ++ 
Sbjct: 225 GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRD 270

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 6/32 (18%), Positives = 10/32 (31%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           G+   AI      L++     +     A C  
Sbjct: 157 GDYTAAIAFLDKILEVCVWDAELRELRAECFI 188

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 4e-06
 Identities = 35/254 (13%), Positives = 67/254 (26%), Gaps = 93/254 (36%)

Query: 2   MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 61
            +  F ++ +      FP   +IP  +                       L ++  W D 
Sbjct: 371 YRKMFDRLSV------FPPSAHIPTIL-----------------------LSLI--WFDV 399

Query: 62  EAR-----MKKLV--SIVAEQLDKNRLPSVHPHHSMLYPLTHEYRKAIAARHANLCLLKA 114
                   + KL   S+V +Q  ++ + S+      +Y       +   A H ++     
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTI-SIP----SIYLELKVKLENEYALHRSI----- 449

Query: 115 MRAKVWQARTESPLFCVQRYAQR----LESLYKVMWDRYSQNLPVTHITQAKIAREAEHF 170
                           V  Y        + L     D+Y  +    H+   +       F
Sbjct: 450 ----------------VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493

Query: 171 ----LDL---------SQVPCNGKAAD-------RIHKDGIHILVNMNGYTKGARNEI-F 209
               LD               N   +        + +K   +I  N   Y +     + F
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP--YICDNDPKYERLVNAILDF 551

Query: 210 ALRPAP--IQSSFT 221
             +     I S +T
Sbjct: 552 LPKIEENLICSKYT 565

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 43.2 bits (103), Expect = 4e-06
 Identities = 8/32 (25%), Positives = 14/32 (43%)

Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
          GN  E+I  +  A++L P+    +      L 
Sbjct: 20 GNYTESIDLFEKAIQLDPEESKYWLMKGKALY 51

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 44.7 bits (105), Expect = 9e-06
 Identities = 9/89 (10%), Positives = 29/89 (32%), Gaps = 4/89 (4%)

Query: 20  SPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYE----ARMKKLVSIVAEQ 75
              ++  A +     ++  P+F  A    A    +       +    A +   +  +   
Sbjct: 211 DDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270

Query: 76  LDKNRLPSVHPHHSMLYPLTHEYRKAIAA 104
            + N L  ++   ++   +  +  ++  A
Sbjct: 271 PELNNLSIIYQIKAVSALVKGKTDESYQA 299

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 14/96 (14%), Positives = 35/96 (36%), Gaps = 13/96 (13%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHC-----LQIVCDWTDYEARMKKLVSIVAEQL 76
               +AI+  + AL+  P+    +C +  C      Q++    +     +KL+ ++   +
Sbjct: 261 DEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAV 320

Query: 77  DK-NRLPSVHPHHSM-------LYPLTHEYRKAIAA 104
               +    + +          L+ L  +Y +A   
Sbjct: 321 AHLKKADEANDNLFRVCSILASLHALADQYEEAEYY 356

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 2/83 (2%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
                AI   R A++L PD       LA  L  + +  + E   +KLV   A +     +
Sbjct: 189 PPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEE-ALEKAPG-V 246

Query: 82  PSVHPHHSMLYPLTHEYRKAIAA 104
             V    +  Y    E  KAI  
Sbjct: 247 TDVLRSAAKFYRRKDEPDKAIEL 269

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 44.2 bits (104), Expect = 2e-05
 Identities = 9/41 (21%), Positives = 15/41 (36%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYE 62
                A   +  AL+ KP  P+    LA     + +W   +
Sbjct: 152 NQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQ 192

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 42.6 bits (100), Expect = 5e-05
 Identities = 4/27 (14%), Positives = 8/27 (29%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNL 48
             + +A +     L+     P A    
Sbjct: 444 EKMQQADEDSERGLESGSLIPSASSWN 470

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 5/31 (16%), Positives = 8/31 (25%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCL 52
               +A   Y  A  L  +      +   C 
Sbjct: 84  EQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 9/32 (28%), Positives = 10/32 (31%)

Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
          G I EA   +R          D    LA   Q
Sbjct: 50 GRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ 81

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 7/32 (21%), Positives = 9/32 (28%)

Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
               AI +   A  L P     +  LA    
Sbjct: 65 EKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 6/32 (18%), Positives = 15/32 (46%)

Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           N+ EA  ++    + +P+  +A+ +L     
Sbjct: 31 ANLAEAALAFEAVCQKEPEREEAWRSLGLTQA 62

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 8/32 (25%), Positives = 14/32 (43%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           G   +A++ Y   L+L+ D   A   L +   
Sbjct: 102 GQEKDALRMYEKILQLEADNLAANIFLGNYYY 133

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 7/32 (21%), Positives = 11/32 (34%)

Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           N  +A   Y+  L+  P+  D     A    
Sbjct: 68 RNYDKAYLFYKELLQKAPNNVDCLEACAEMQV 99

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 42.4 bits (100), Expect = 6e-05
 Identities = 5/32 (15%), Positives = 8/32 (25%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
             +   +     A  L P    A  +     Q
Sbjct: 290 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQ 321

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 42.0 bits (99), Expect = 8e-05
 Identities = 4/32 (12%), Positives = 7/32 (21%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
             +   +     A  L P    A  +      
Sbjct: 426 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGRP 457

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 42.0 bits (99), Expect = 8e-05
 Identities = 5/32 (15%), Positives = 9/32 (28%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
             +   +     A  L P+   A  +     Q
Sbjct: 358 ETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQ 389

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 5/32 (15%), Positives = 8/32 (25%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
             +   +     A  L P    A  +     Q
Sbjct: 324 ETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQ 355

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 5/32 (15%), Positives = 8/32 (25%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
             +   +     A  L P    A  +     Q
Sbjct: 222 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQ 253

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 5/32 (15%), Positives = 9/32 (28%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
             +   +     A  L P+   A  +     Q
Sbjct: 392 ETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQ 423

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 5/32 (15%), Positives = 9/32 (28%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
             +   +     A  L P    A  + +   Q
Sbjct: 256 ETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQ 287

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 5/32 (15%), Positives = 9/32 (28%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
             +   +     A  L P+   A  +     Q
Sbjct: 120 ETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQ 151

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 5/32 (15%), Positives = 8/32 (25%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
             +   +     A  L P    A  +     Q
Sbjct: 188 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQ 219

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 17/82 (20%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
           G   +A       +K  P+        A  L    +   YE  ++ L+ I+AE       
Sbjct: 41  GEYRKAEAVLANGVKQFPNHQALRVFYAMVLY---NLGRYEQGVELLLKIIAE------- 90

Query: 82  PSVHPHHSMLYPLTHEYRKAIA 103
                    +      Y++AI 
Sbjct: 91  ---TSDDETI----QSYKQAIL 105

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 38.2 bits (89), Expect = 4e-04
 Identities = 12/85 (14%), Positives = 28/85 (32%), Gaps = 9/85 (10%)

Query: 22  GNIPEAIQSYRTALKLK---PDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDK 78
           G   +A+  Y  A+       D  + Y  L    + + ++   EA +   V         
Sbjct: 4   GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH--- 60

Query: 79  NRLPSVHPHHSMLYPLTHEYRKAIA 103
               ++   ++M+      Y + + 
Sbjct: 61  ---QALRVFYAMVLYNLGRYEQGVE 82

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 6/39 (15%), Positives = 12/39 (30%)

Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 60
          G   +A   ++    L       +  L  C Q +  +  
Sbjct: 35 GXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDL 73

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 8/32 (25%), Positives = 12/32 (37%)

Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           +  +A   Y  A++L P     Y N A    
Sbjct: 22 KDFEKAHVHYDKAIELDPSNITFYNNKAAVYF 53

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 39.0 bits (90), Expect = 6e-04
 Identities = 16/83 (19%), Positives = 22/83 (26%), Gaps = 16/83 (19%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
           G    A    + AL      P+   NL    Q +    +   R              ++L
Sbjct: 214 GRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRY------------LSQL 261

Query: 82  PSVHPHHSMLYPLTHEYRKAIAA 104
              H  H    P   EYR     
Sbjct: 262 KDAHRSH----PFIKEYRAKEND 280

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 37.0 bits (86), Expect = 6e-04
 Identities = 8/24 (33%), Positives = 16/24 (66%)

Query: 22 GNIPEAIQSYRTALKLKPDFPDAY 45
          G+  +A+ +Y++A++L PD P   
Sbjct: 49 GDWQKALNNYQSAIELNPDSPALQ 72

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 5/32 (15%), Positives = 11/32 (34%)

Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           N+ EA +++  ++        AY        
Sbjct: 51 KNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	222
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	100.0
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.91
3q3e_A	631	HMW1C-like glycosyltransferase; N-glycosylation; 2	99.87
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.43
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.43
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.41
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.39
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.35
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.3
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.3
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.28
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.28
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.28
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.27
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.27
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.25
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.24
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.23
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.22
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.21
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.2
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.17
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.17
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.16
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.14
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.11
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.1
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.1
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.1
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.09
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.08
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.07
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.06
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.03
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.03
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.0
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.0
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.99
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.99
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.99
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	98.98
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.97
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.97
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.95
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.95
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.94
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.94
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.94
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.92
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.92
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.89
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.88
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.86
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.84
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.84
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.84
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.83
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.83
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.82
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.81
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.81
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.81
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.8
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	98.79
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.78
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.78
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.77
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.76
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.76
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.76
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.75
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.75
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	98.75
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.75
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.74
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.73
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.73
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.72
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.72
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.7
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.7
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.7
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.7
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.7
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.69
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.67
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	98.67
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.67
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.66
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.65
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	98.65
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	98.65
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.65
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	98.65
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.64
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.64
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.63
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	98.62
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.62
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.62
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.61
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.61
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.6
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.59
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.58
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.58
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.55
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.55
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	98.53
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.51
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.49
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.49
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.49
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.49
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.48
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.48
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.48
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.46
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.46
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.46
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.45
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.45
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.43
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.43
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.42
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.41
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.38
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.37
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.36
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.35
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.35
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.33
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.33
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.33
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.33
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.33
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.31
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.31
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.31
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.3
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.3
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.3
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.27
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.25
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.24
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.23
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.22
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.21
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.18
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.16
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.15
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.15
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.14
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.14
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.14
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.12
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.11
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.11
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.11
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.1
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.1
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.08
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.08
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.05
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.05
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.02
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.0
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.99
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.97
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	97.96
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	97.95
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	97.95
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	97.95
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.95
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	97.94
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	97.94
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.93
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	97.92
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	97.91
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	97.91
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	97.9
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	97.9
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	97.87
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	97.87
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	97.86
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	97.86
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	97.86
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	97.82
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	97.77
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.72
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.71
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	97.64
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	97.61
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	97.59
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.49
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.47
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.35
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	97.29
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.28
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.26
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.24
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.21
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.15
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.14
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.11
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	97.1
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.01
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	96.99
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.8
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	96.61
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.49
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	96.29
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.28
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	96.21
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.19
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.13
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.07
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.88
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	95.56
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	95.33
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	95.32
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	95.14
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	94.4
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.28
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.14
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	94.12
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	94.0
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	94.0
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	93.88
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	90.77
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	88.91
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	88.48
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	87.8
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	86.45
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	83.42
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	83.34
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	82.81
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	82.29
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	81.5
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	81.04

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=100.00  E-value=1.4e-47  Score=356.06  Aligned_cols=211  Identities=65%  Similarity=0.995  Sum_probs=179.2

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCC
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL   81 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~l~~~~~   81 (222)
                      .++|+++.+|+++|.+|.++|++++|+++|++|++++|+++.++.+||.++..+|+|++|++.+++++++.++.++.+..
T Consensus       105 ~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~~~~~~l  184 (723)
T 4gyw_A          105 QINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRL  184 (723)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhHHhhccC
Confidence            35788888888888888888888888888888888888888888888888888888888888888888888888887777


Q ss_pred             CCCCccccccccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCc---ccchhccccceeeEeeccccccCCCchhh
Q psy17695         82 PSVHPHHSMLYPLTHEYRKAIAARHANLCLLKAMRAKVWQARTESPLF---CVQRYAQRLESLYKVMWDRYSQNLPVTHI  158 (222)
Q Consensus        82 ~~~~p~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~rLRIGYvS~~d~~f~~H~v~~l  158 (222)
                      +...|+..+++++++..++.+++.++..+.....      ....++..   ..+.+++|||||||| +|  |++|||++|
T Consensus       185 ~~~~~~~~l~~~~~~~~~~aia~r~~~~~~~~~~------~~~~~~~~~~~~~~~~~~klrIGyvS-~d--f~~H~v~~~  255 (723)
T 4gyw_A          185 PSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKIN------VLHKPPYEHPKDLKLSDGRLRVGYVS-SD--FGNHPTSHL  255 (723)
T ss_dssp             CSSCTTGGGGSCCCHHHHHHHHHHHHHHHHHHHH------TTTCCCCCCCCSSTTTTTCEEEEEEE-SC--SSSSHHHHH
T ss_pred             cccchhhhhhhhcCHHHHHHHHHHHHHhhhhhhh------cccCccccCccccccccccceeeeec-hh--hccCcHHHH
Confidence            8888999999999999999999888765543322      11111211   223467899999999 99  999999999


Q ss_pred             H---------------------------HHHHHhhhcceeecCCC-CChHHHHHHHHhCCCcEEEeCCCCCCCcchhhhh
Q psy17695        159 T---------------------------QAKIAREAEHFLDLSQV-PCNGKAADRIHKDGIHILVNMNGYTKGARNEIFA  210 (222)
Q Consensus       159 ~---------------------------~~~~~~~~~~~~~~~~~-~~~~~~a~~i~~d~iDILvDL~G~t~~~r~~i~a  210 (222)
                      +                           |.+++..+++|++++++ +| .+++++|++|+|||||||+|||.++|+.||+
T Consensus       256 ~~~~~~~~d~~~fei~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~a~~i~~d~iDIlidl~g~t~~~r~~i~a  334 (723)
T 4gyw_A          256 MQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCN-GKAADRIHQDGIHILVNMNGYTKGARNELFA  334 (723)
T ss_dssp             HTTHHHHSCTTTEEEEEEESSCCCSCHHHHHHHHHSSEEEEGGGCCCH-HHHHHHHHHTTCSEEEESCSSBTTCCTHHHH
T ss_pred             HHHHHHHhccCceeEEEEEcCCCCccHHHHHHHHhhccccccccCCcH-HHHHHHHHhccceeEEeccCCCCCCcchhhh
Confidence            9                           67899999999999998 55 7999999999999999999999999999999


Q ss_pred             hCCchhhhcccC
Q psy17695        211 LRPAPIQSSFTA  222 (222)
Q Consensus       211 ~rpAPvQv~~lG  222 (222)
                      +|||||||+|||
T Consensus       335 ~r~APvQv~~lG  346 (723)
T 4gyw_A          335 LRPAPIQAMWLG  346 (723)
T ss_dssp             TCCSSEEEECSS
T ss_pred             cCCCCceeeecc
Confidence            999999999998

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.91  E-value=1.9e-23  Score=188.45  Aligned_cols=205  Identities=20%  Similarity=0.230  Sum_probs=151.4

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh-----
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQL-----   76 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~l-----   76 (222)
                      ..+|+++.+++++|.++..+|++++|+.+|+++++++|+++.++.++|.++...|++++|.+.++++++..|+..     
T Consensus        51 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  130 (568)
T 2vsy_A           51 ALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQ  130 (568)
T ss_dssp             TTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            467888888888888888888888888888888888888888888888888888888888888888877665420     


Q ss_pred             ------hc---C---------------CCCCCCccccccccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCc-cc
Q psy17695         77 ------DK---N---------------RLPSVHPHHSMLYPLTHEYRKAIAARHANLCLLKAMRAKVWQARTESPLF-CV  131 (222)
Q Consensus        77 ------~~---~---------------~~~~~~p~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  131 (222)
                            ..   +               .+.+..||..+. +.++..++..+..+......     ..|     .|.+ .+
T Consensus       131 l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~-----~~~-----~~~~~~~  199 (568)
T 2vsy_A          131 LLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS-EDASAAEQLACARTRAQAIA-----ASV-----RPLAPTR  199 (568)
T ss_dssp             HHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT-SCCCHHHHHHHHHHHHHHHH-----TTC-----CCCCCCC
T ss_pred             HHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC-CCCHHHHHHHHHHHHHhccC-----ccc-----CCCCCCC
Confidence                  01   1               123345665555 66666666666555432111     011     1121 22


Q ss_pred             chhccccceeeEeeccccccCCCchhhH-----------------------------HHHHHhhhcceeecCCCCChHHH
Q psy17695        132 QRYAQRLESLYKVMWDRYSQNLPVTHIT-----------------------------QAKIAREAEHFLDLSQVPCNGKA  182 (222)
Q Consensus       132 ~~~~~rLRIGYvS~~d~~f~~H~v~~l~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~  182 (222)
                      ..+++++|||||| ++  |..|+++.++                             +.+++... .|+++..++. .++
T Consensus       200 ~~~~~~~rI~~~~-~~--~~~~g~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~l  274 (568)
T 2vsy_A          200 VRSKGPLRVGFVS-NG--FGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGSTLRTRLAQAS-TLHDVTALGH-LAT  274 (568)
T ss_dssp             CCSSSCEEEEEEE-SC--SSSSHHHHHHHHHHHHHHHHCTTEEEEEEESSCCCSCHHHHHHHHTS-EEEECTTCCH-HHH
T ss_pred             CCCCCCeEEEEEC-cc--cccChHHHHHHHHHhhccCCcccEEEEEEECCCCCccHHHHHHHhcC-eEEECCCCCH-HHH
Confidence            3357899999999 99  9999998866                             12333334 6778877786 799


Q ss_pred             HHHHHhCCCcEEEeCCCCCCCcchhhhhhCCchhhhcccC
Q psy17695        183 ADRIHKDGIHILVNMNGYTKGARNEIFALRPAPIQSSFTA  222 (222)
Q Consensus       183 a~~i~~d~iDILvDL~G~t~~~r~~i~a~rpAPvQv~~lG  222 (222)
                      .+.|+++++||+++++|||.++++.+++.|++|||++|+|
T Consensus       275 ~~~i~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (568)
T 2vsy_A          275 AKHIRHHGIDLLFDLRGWGGGGRPEVFALRPAPVQVNWLA  314 (568)
T ss_dssp             HHHHHHTTCSEEEECSSCTTCSSCHHHHTCCSSEEEEESS
T ss_pred             HHHHHhCCCCEEEECCCCCCcchHHHHhcCCCceeEeeec
Confidence            9999999999999999999999999999999999999976

>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A

Probab=99.87  E-value=3e-23  Score=187.26  Aligned_cols=87  Identities=10%  Similarity=-0.084  Sum_probs=76.5

Q ss_pred             chhccccceeeEeeccccccCCCchhhH---------------------HHHHHhhhcceeecCCCC----ChHHHHHHH
Q psy17695        132 QRYAQRLESLYKVMWDRYSQNLPVTHIT---------------------QAKIAREAEHFLDLSQVP----CNGKAADRI  186 (222)
Q Consensus       132 ~~~~~rLRIGYvS~~d~~f~~H~v~~l~---------------------~~~~~~~~~~~~~~~~~~----~~~~~a~~i  186 (222)
                      ..+++++||||+| +|  |++|+|++++                     -+.-++.+|+|+++++++    + ++++++|
T Consensus       270 ~~~~K~l~ig~ls-~f--~~~HsV~r~~~~~l~~dR~~FEV~~Ys~~~~D~~tr~~~d~f~~l~~~s~~~~~-~~ia~~I  345 (631)
T 3q3e_A          270 YRNNKPVMVVLLE-HF--HSAHSIYRTHSTSMIAAREHFYLIGLGSPSVDQAGQEVFDEFHLVAGDNMKQKL-EFIRSVC  345 (631)
T ss_dssp             EETTEEEEEEECS-SC--CTTSHHHHHHHHHHHHHTTTSEEEEEECTTSCHHHHTTSSEEEECCCSSHHHHH-HHHHHHH
T ss_pred             CCCCCeEEEEEeC-cc--cCCCcHHHHHHHHHHhhhhcEEEEEEeCCCCCHHHHhcCcEEEECCCCCccccH-HHHHHHH
Confidence            3468899999999 99  9999999877                     123366789999999998    7 7999999


Q ss_pred             HhCCCcEEEeCCCCCCCcchhhhhhCCchhhhcccC
Q psy17695        187 HKDGIHILVNMNGYTKGARNEIFALRPAPIQSSFTA  222 (222)
Q Consensus       187 ~~d~iDILvDL~G~t~~~r~~i~a~rpAPvQv~~lG  222 (222)
                      ++|+|||||||+|||.+.+..++++|||||||+|+|
T Consensus       346 r~d~IDILVdL~g~t~~~~i~~aa~RpAPVQvs~lG  381 (631)
T 3q3e_A          346 ESNGAAIFYMPSIGMDMTTIFASNTRLAPIQAIALG  381 (631)
T ss_dssp             HHHTCSEEEESCCSSSHHHHHHTTSCCSSEEEEECS
T ss_pred             HhcCCCEEEECCCCCCchhHHHHhCCCchheEeccC
Confidence            999999999999999777777777999999999998

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.43  E-value=1.7e-13  Score=103.55  Aligned_cols=73  Identities=16%  Similarity=-0.003  Sum_probs=51.2

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..+|+++++++++|.++.++|++++|+.+|+++++++|+++.+|+++|.++..+|++++|+.+|++++++.|+
T Consensus        30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~  102 (151)
T 3gyz_A           30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN  102 (151)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence            4566667777777777777777777777777777777777777777777777777777777777777766665

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.43  E-value=7.6e-13  Score=92.32  Aligned_cols=73  Identities=14%  Similarity=0.157  Sum_probs=67.8

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +.+|+++.+++++|.++..+|++++|+.+|+++++++|+++.+++++|.++...|++++|.+.+++++++.++
T Consensus         1 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            1 MEDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             ----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            4689999999999999999999999999999999999999999999999999999999999999999998876

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.41  E-value=2.4e-13  Score=102.70  Aligned_cols=73  Identities=8%  Similarity=0.014  Sum_probs=70.1

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .++|+++.+|+++|.++..+|++++|+.+|++|++++|+++.+++++|.++..+|++++|..+|++++++.|+
T Consensus        64 ~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~  136 (151)
T 3gyz_A           64 IYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND  136 (151)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            4689999999999999999999999999999999999999999999999999999999999999999988765

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.39  E-value=7.6e-13  Score=96.44  Aligned_cols=73  Identities=18%  Similarity=0.277  Sum_probs=56.4

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      ++|+.++++.++|..+.+.|++++|+.+|++|++++|+++.+++++|.++..+|++++|+..+++++++.|+.
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~   80 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF   80 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh
Confidence            5677777777777777777777777777777777777777777777777777777777777777777776653

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.35  E-value=1.6e-12  Score=94.76  Aligned_cols=74  Identities=14%  Similarity=0.266  Sum_probs=71.2

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      ..+|+++.+|+++|.++..+|++++|+..|+++++++|+++.+++++|.++..+|++++|...|++++++.|+.
T Consensus        41 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~  114 (126)
T 4gco_A           41 KRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN  114 (126)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999998863

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.30  E-value=2.2e-12  Score=93.20  Aligned_cols=73  Identities=14%  Similarity=-0.065  Sum_probs=59.9

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..+|+++.+|+++|.++..+|++++|+.+|+++++++|+++.++.++|.++...|++++|...++++++..|+
T Consensus        45 ~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~  117 (121)
T 1hxi_A           45 QKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ  117 (121)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            3578888888888888888888888888888888888888888888888888888888888888888877765

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.30  E-value=5.1e-12  Score=94.52  Aligned_cols=72  Identities=17%  Similarity=0.111  Sum_probs=44.0

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+|+++.+|+++|.++..+|++++|+.+|+++++++|+++.+++++|.++..+|++++|...|++++++.|+
T Consensus        50 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  121 (148)
T 2vgx_A           50 LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN  121 (148)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            355666666666666666666666666666666666666666666666666666666666666666555553

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.28  E-value=1.2e-12  Score=99.23  Aligned_cols=73  Identities=12%  Similarity=0.139  Sum_probs=67.6

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCc----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------CHHH
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNI----------PEAIQSYRTALKLKPDFPDAYCNLAHCLQIVC-----------DWTD   60 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~----------~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~-----------~~~~   60 (222)
                      .++|+++++|+++|.++..+|++          ++|+.+|++|++++|+++.+++++|++|..+|           ++++
T Consensus        30 ~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~e  109 (158)
T 1zu2_A           30 KSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDL  109 (158)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred             HHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHH
Confidence            46899999999999999999886          59999999999999999999999999999875           8999


Q ss_pred             HHHHHHHHHHHHHh
Q psy17695         61 YEARMKKLVSIVAE   74 (222)
Q Consensus        61 a~~~~~~~~~~~~~   74 (222)
                      |+++|++++++.|+
T Consensus       110 A~~~~~kAl~l~P~  123 (158)
T 1zu2_A          110 ATQFFQQAVDEQPD  123 (158)
T ss_dssp             HHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHhCCC
Confidence            99999999988886

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.28  E-value=8.8e-12  Score=92.00  Aligned_cols=72  Identities=18%  Similarity=0.100  Sum_probs=51.1

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+|+++.+|+++|.++..+|++++|+.+|+++++++|+++.+++++|.++..+|++++|...|++++++.|+
T Consensus        47 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  118 (142)
T 2xcb_A           47 LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA  118 (142)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred             hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            466777777777777777777777777777777777777777777777777777777777777777766664

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.28  E-value=9.6e-12  Score=90.51  Aligned_cols=70  Identities=16%  Similarity=0.057  Sum_probs=67.1

Q ss_pred             CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      +.+.++.+||.++.+.|++++|+.+|++|++++|+++.++.|+|.++..+|++++|+..+++++.+.|+.
T Consensus         6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~   75 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET   75 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc
Confidence            4578999999999999999999999999999999999999999999999999999999999999999873

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.27  E-value=6.8e-12  Score=95.27  Aligned_cols=68  Identities=18%  Similarity=0.137  Sum_probs=65.7

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHh-------CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKL-------KPDFPDAY----CNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l-------~P~~~~a~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      +.+|+|+|.++..+|++++|+.+|++||++       +|+++.+|    +++|.++..+|++++|+.+|++++++.|+.
T Consensus        57 a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d  135 (159)
T 2hr2_A           57 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  135 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            449999999999999999999999999999       99999999    999999999999999999999999999984

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.27  E-value=2.6e-11  Score=85.87  Aligned_cols=73  Identities=14%  Similarity=0.105  Sum_probs=70.9

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..+|+++.+++++|.++...|++++|+.+|+++++++|+++.++.++|.++...|++++|...+++++.+.|+
T Consensus        13 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~   85 (115)
T 2kat_A           13 AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS   85 (115)
T ss_dssp             TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            5789999999999999999999999999999999999999999999999999999999999999999999886

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.25  E-value=2e-11  Score=87.70  Aligned_cols=73  Identities=21%  Similarity=0.221  Sum_probs=63.7

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..+|+++.+|.++|.++..+|++++|+.+|+++++++|+++.+++++|.++..+|++++|...+++++++.|+
T Consensus        32 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  104 (126)
T 3upv_A           32 KRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAE  104 (126)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcc
Confidence            3578888888999999998999999999999999999988888889998888889998888888888888865

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.24  E-value=7e-12  Score=93.82  Aligned_cols=74  Identities=9%  Similarity=-0.023  Sum_probs=69.9

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      ..+|+++.+++++|.+|.++|++++|+.+|+++++++|+++.++.++|.++...|++++|+..|++++++.|+.
T Consensus        25 ~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   98 (150)
T 4ga2_A           25 PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQ   98 (150)
T ss_dssp             CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCC
Confidence            45678889999999999999999999999999999999999999999999999999999999999999998863

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.23  E-value=1.3e-11  Score=92.26  Aligned_cols=74  Identities=8%  Similarity=-0.071  Sum_probs=71.2

Q ss_pred             CCCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +..+|+++.+++++|.++...|++++|+..|+++++++|+++.+++++|.++...|++++|+..|++++.+.|+
T Consensus        14 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~   87 (148)
T 2vgx_A           14 NEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX   87 (148)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999998886

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.22  E-value=1.2e-11  Score=92.62  Aligned_cols=73  Identities=14%  Similarity=0.080  Sum_probs=68.0

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEAR-MKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~   74 (222)
                      ..+|+++.+|+++|.++..+|++++|+.+|+++++++|+++.++.++|.++...++++++... +++++++.|+
T Consensus        59 ~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~  132 (150)
T 4ga2_A           59 NVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG  132 (150)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT
T ss_pred             HhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC
Confidence            468999999999999999999999999999999999999999999999999999999876655 5899988886

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.21  E-value=1.6e-11  Score=87.53  Aligned_cols=71  Identities=14%  Similarity=0.073  Sum_probs=68.4

Q ss_pred             CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +|+++.+++++|.++..+|++++|+.+|+++++++|+++.+++++|.++...|++++|...+++++...|+
T Consensus        23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~   93 (117)
T 3k9i_A           23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSD   93 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC
T ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            58899999999999999999999999999999999999999999999999999999999999999988775

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.20  E-value=3.6e-11  Score=90.56  Aligned_cols=72  Identities=13%  Similarity=0.189  Sum_probs=59.1

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ++|+++.+|+++|.++..+|++++|+.+|+++++++|+++.+++++|.++..+|++++|...|++++++.|+
T Consensus        40 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  111 (164)
T 3sz7_A           40 IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN  111 (164)
T ss_dssp             HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred             hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            467888888888888888888888888888888888888888888888888888888888888888877775

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.17  E-value=4.1e-11  Score=88.36  Aligned_cols=74  Identities=8%  Similarity=-0.075  Sum_probs=71.0

Q ss_pred             CCCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +..+|+++.+++.+|.++...|++++|+..|+++++++|+++.++.++|.++...|++++|+..|++++.+.|+
T Consensus        11 l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A           11 RGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999998886

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.17  E-value=1.2e-10  Score=88.84  Aligned_cols=73  Identities=16%  Similarity=0.200  Sum_probs=70.0

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      .+|+++.++..+|.++..+|++++|+.+|+++++++|+++.++.++|.++..+|++++|...|++++++.|+.
T Consensus       102 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  174 (184)
T 3vtx_A          102 LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK  174 (184)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred             hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence            5799999999999999999999999999999999999999999999999999999999999999999988864

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.16  E-value=1.2e-10  Score=84.21  Aligned_cols=72  Identities=18%  Similarity=0.206  Sum_probs=47.4

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+|+++.+++++|.++..+|++++|+.+|+++++++|+++.+++++|.++...|++++|...+++++.+.|+
T Consensus        38 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           38 RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence            356666666666666666666666666666666666666666666666666666666666666666666664

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.14  E-value=3.2e-11  Score=112.09  Aligned_cols=71  Identities=24%  Similarity=0.386  Sum_probs=36.4

Q ss_pred             CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +|+++.+|++||.+|.++|++++|+++|++|++++|+++.+++|+|.++..+|++++|++.|++++++.|+
T Consensus        39 ~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~  109 (723)
T 4gyw_A           39 FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA  109 (723)
T ss_dssp             CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            45555555555555555555555555555555555555555555555555555555555555555544443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.11  E-value=6.3e-11  Score=86.13  Aligned_cols=72  Identities=11%  Similarity=0.002  Sum_probs=66.3

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFP-------DAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~-------~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      .++|+++.+|+++|.+|..+|++++|+..|+++++++|++.       .++.++|.++..++++++|++.|++++...|
T Consensus        36 ~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~  114 (127)
T 4gcn_A           36 ELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR  114 (127)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             HhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence            46899999999999999999999999999999999998763       5899999999999999999999999987654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.10  E-value=1.4e-10  Score=91.73  Aligned_cols=73  Identities=11%  Similarity=0.114  Sum_probs=66.1

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHH
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIV-----------CDWTDYEARMKKLVS   70 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~-----------~~~~~a~~~~~~~~~   70 (222)
                      ..+|+++.+++++|.++..+|++++|+.+|+++++++|+++.++.++|.++...           |++++|+..++++++
T Consensus        33 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~  112 (217)
T 2pl2_A           33 KENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER  112 (217)
T ss_dssp             TTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999999999999999999999           999999999999988


Q ss_pred             HHHh
Q psy17695         71 IVAE   74 (222)
Q Consensus        71 ~~~~   74 (222)
                      +.|+
T Consensus       113 ~~P~  116 (217)
T 2pl2_A          113 VNPR  116 (217)
T ss_dssp             HCTT
T ss_pred             hCcc
Confidence            8776

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.10  E-value=7e-11  Score=92.84  Aligned_cols=73  Identities=14%  Similarity=0.028  Sum_probs=69.7

Q ss_pred             CCCCCCHHHHHH----------------HHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17695          2 MKTPFFKVGILF----------------SNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARM   65 (222)
Q Consensus         2 ~~~P~~~~~~~~----------------lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~   65 (222)
                      ..+|+++.+|+.                +|.++..+|++++|+.+|+++++++|+++.++.++|.++...|++++|+..|
T Consensus        32 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~  111 (208)
T 3urz_A           32 ALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMY  111 (208)
T ss_dssp             HHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            357888999999                9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q psy17695         66 KKLVSIVAE   74 (222)
Q Consensus        66 ~~~~~~~~~   74 (222)
                      ++++++.|+
T Consensus       112 ~~al~~~P~  120 (208)
T 3urz_A          112 EKILQLEAD  120 (208)
T ss_dssp             HHHHHHCTT
T ss_pred             HHHHHcCCC
Confidence            999999886

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.10  E-value=2.4e-10  Score=81.96  Aligned_cols=70  Identities=16%  Similarity=0.246  Sum_probs=67.1

Q ss_pred             CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      |..++.+.++|..+...|++++|+..|+++++++|+++.++.++|.++..+|++++|+..+++++++.|+
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~   70 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN   70 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence            5668899999999999999999999999999999999999999999999999999999999999998876

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.09  E-value=2.1e-10  Score=79.74  Aligned_cols=68  Identities=18%  Similarity=0.156  Sum_probs=64.4

Q ss_pred             CHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ++.+++++|.++...|++++|+.+|+++++++|+++.++.++|.++..+|++++|...+++++++.|+
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   70 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST   70 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence            57899999999999999999999999999999999999999999999999999999999999876664

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.08  E-value=1.7e-10  Score=86.63  Aligned_cols=71  Identities=14%  Similarity=0.020  Sum_probs=67.7

Q ss_pred             CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +|.++.+|+++|.++..+|++++|+..|+++++++|+++.+++++|.++..+|++++|...|++++.+.|+
T Consensus        59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~  129 (162)
T 3rkv_A           59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA  129 (162)
T ss_dssp             HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence            45667899999999999999999999999999999999999999999999999999999999999998886

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.07  E-value=4.7e-10  Score=75.19  Aligned_cols=70  Identities=20%  Similarity=0.270  Sum_probs=66.2

Q ss_pred             CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      |.++.+++++|.++...|++++|+.+|+++++++|+++.++.++|.++...|++++|...++++++..|+
T Consensus         6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~   75 (91)
T 1na3_A            6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN   75 (91)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            3578999999999999999999999999999999999999999999999999999999999999987664

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.06  E-value=8.6e-10  Score=78.60  Aligned_cols=72  Identities=15%  Similarity=0.197  Sum_probs=45.1

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+|+++.+++++|.++..+|++++|+.+|+++++++|+++.++.++|.++...|++++|...+++++...|+
T Consensus        45 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~  116 (133)
T 2lni_A           45 RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS  116 (133)
T ss_dssp             TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred             cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC
Confidence            456666666666666666666666666666666666666666666666666666666666666666555443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.03  E-value=5.7e-10  Score=84.93  Aligned_cols=69  Identities=17%  Similarity=0.152  Sum_probs=64.6

Q ss_pred             CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +++..|+++|.++..+|++++|+.+|+++++++|+++.++.++|.++...|++++|...+.++....++
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~   71 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT   71 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch
Confidence            578899999999999999999999999999999999999999999999999999999999998876664

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.03  E-value=3.9e-10  Score=77.85  Aligned_cols=72  Identities=11%  Similarity=0.156  Sum_probs=68.0

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+|+++.++..+|.++...|++++|+.+|+++++++|++..++.++|.++...|++++|...++++++..|+
T Consensus         1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~   72 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED   72 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred             CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence            479999999999999999999999999999999999999999999999999999999999999999876654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.00  E-value=1.8e-09  Score=77.93  Aligned_cols=72  Identities=15%  Similarity=0.105  Sum_probs=68.0

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+|.++..++.+|.++...|++++|+.+|+++++++|+++.++.++|.++...|++++|...+++++++.|+
T Consensus         4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~   75 (137)
T 3q49_B            4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ   75 (137)
T ss_dssp             --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch
Confidence            468899999999999999999999999999999999999999999999999999999999999999988775

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.00  E-value=2.1e-10  Score=98.96  Aligned_cols=73  Identities=8%  Similarity=-0.008  Sum_probs=51.5

Q ss_pred             CCCCCCHHHHHHHHHhcccCCC-cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGN-IPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~-~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .++|+++.+|+++|.++..+|+ +++|+.+|+++++++|+++.+|+++|.++..+|++++|+..|++++++.|+
T Consensus       125 ~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~  198 (382)
T 2h6f_A          125 ELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK  198 (382)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred             HhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence            3467777777777777777775 777777777777777777777777777777777777777777777766654

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.99  E-value=1.2e-09  Score=78.68  Aligned_cols=66  Identities=11%  Similarity=0.012  Sum_probs=63.4

Q ss_pred             HHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          9 VGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..++.+|.++.+.|++++|+..|+++++++|+++.+++++|.++...|++++|+..+++++++.|+
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~   83 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK   83 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            457899999999999999999999999999999999999999999999999999999999999886

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.99  E-value=9.2e-10  Score=86.93  Aligned_cols=70  Identities=20%  Similarity=0.093  Sum_probs=66.6

Q ss_pred             CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      |+++.+++++|.++...|++++|+..|+++++++|+++.+++++|.++...|++++|+..+++++++.|+
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~   71 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR   71 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            7889999999999999999999999999999999999999999999999999999999999999998886

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.99  E-value=1.3e-09  Score=81.87  Aligned_cols=72  Identities=13%  Similarity=0.042  Sum_probs=68.7

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .++.++..++.+|.++...|++++|+.+|+++++++|+++.+++++|.++...|++++|+..+++++.+.|+
T Consensus         6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~   77 (164)
T 3sz7_A            6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK   77 (164)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            456788999999999999999999999999999999999999999999999999999999999999998876

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=98.98  E-value=4.8e-10  Score=96.74  Aligned_cols=71  Identities=8%  Similarity=0.014  Sum_probs=35.9

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHH
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCD-WTDYEARMKKLVSIVA   73 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~   73 (222)
                      .+|+++.+|+++|.++...|++++|+.+|+++++++|++..+|+++|.++..+|+ +++|+..+++++.+.|
T Consensus        92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P  163 (382)
T 2h6f_A           92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP  163 (382)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred             CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC
Confidence            3444455555555555555555555555555555555555555555555555553 5555555555554444

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.97  E-value=2.4e-09  Score=76.43  Aligned_cols=72  Identities=11%  Similarity=0.069  Sum_probs=64.1

Q ss_pred             CCCCCH---HHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          3 KTPFFK---VGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF---PDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~~---~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~---~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+|+++   .+++.+|.++..+|++++|+..|+++++.+|++   +.+++++|.++..+|++++|...+++++...|+
T Consensus        31 ~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  108 (129)
T 2xev_A           31 LYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPG  108 (129)
T ss_dssp             HCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            357776   799999999999999999999999999999999   888999999999999999999999988877664

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.97  E-value=2.1e-09  Score=74.31  Aligned_cols=71  Identities=13%  Similarity=0.017  Sum_probs=64.7

Q ss_pred             CCCCCHHHHHHHHHhcccCCC---cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695          3 KTPFFKVGILFSNSSFPSPGN---IPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~---~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      .+|++++.+..+|.++...++   .++|...+++|++++|+++.+++.+|..+...|+|++|...+++++...|
T Consensus         1 ~~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p   74 (93)
T 3bee_A            1 SNAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND   74 (93)
T ss_dssp             -CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            379999999999999976555   89999999999999999999999999999999999999999999875544

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.95  E-value=1.6e-09  Score=82.14  Aligned_cols=64  Identities=16%  Similarity=0.087  Sum_probs=60.8

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPD-------FPD-----AYCNLAHCLQIVCDWTDYEARMKKLVSI   71 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~-------~~~-----a~~~l~~~~~~~~~~~~a~~~~~~~~~~   71 (222)
                      +..+.++|+.+...|++++|+.+|++|++++|+       +..     +|.|+|.++..+|+|++|+.++++++++
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l   86 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY   86 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            577899999999999999999999999999999       544     9999999999999999999999999998

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.95  E-value=7.3e-10  Score=76.45  Aligned_cols=71  Identities=14%  Similarity=0.089  Sum_probs=66.8

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPD--FPDAYCNLAHCLQIV-CDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~--~~~a~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~   73 (222)
                      .+|+++.++.++|.++..+|++++|+.+|+++++++|+  +..++.++|.++... |++++|.+.+++++...|
T Consensus        35 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p  108 (112)
T 2kck_A           35 LDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH  108 (112)
T ss_dssp             HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred             hCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence            57899999999999999999999999999999999999  999999999999999 999999999988875554

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.94  E-value=1.6e-09  Score=89.23  Aligned_cols=74  Identities=19%  Similarity=0.210  Sum_probs=70.1

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      ..+|+++.+++++|.++..+|++++|+..|+++++++|+++.+++++|.++..+|++++|...+++++++.|+.
T Consensus        32 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           32 TRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999863

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.94  E-value=2.3e-09  Score=77.89  Aligned_cols=72  Identities=17%  Similarity=0.091  Sum_probs=48.9

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF---PDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~---~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+|.++..++.+|..+...|++++|+.+|+++++++|++   ..++.++|.++...+++++|...+++++...|+
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~   97 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG   97 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC
T ss_pred             cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc
Confidence            346666677777777777777777777777777777766   666677777777777777777666666666553

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.94  E-value=2.2e-09  Score=79.51  Aligned_cols=72  Identities=10%  Similarity=0.049  Sum_probs=64.4

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+|+++.++.++|.++..+|++++|+.+|+++++++|+++.++.++|.++...|++++|...+++++...|+
T Consensus        42 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~  113 (166)
T 1a17_A           42 LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH  113 (166)
T ss_dssp             HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            468889999999999999999999999999999999999999999999999999999999999988877765

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.92  E-value=3e-09  Score=73.82  Aligned_cols=66  Identities=17%  Similarity=0.288  Sum_probs=32.5

Q ss_pred             CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17695          4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLV   69 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~   69 (222)
                      +|+++.++.++|.++..+|++++|+..|+++++++|+++.++.++|.++...|++++|...+++++
T Consensus        34 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~   99 (118)
T 1elw_A           34 DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGL   99 (118)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            344444445555555545555555555555555555444445555555444555544444444444

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.92  E-value=6.6e-09  Score=73.31  Aligned_cols=70  Identities=20%  Similarity=0.281  Sum_probs=38.5

Q ss_pred             CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695          4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      +|+++.++.++|.++...|++++|+.+|+++++++|+++.++.++|.++...|++++|...+++++...|
T Consensus        42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p  111 (131)
T 2vyi_A           42 NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDP  111 (131)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCc
Confidence            4555555555555555555555555555555555555555555555555555555555555555554433

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.89  E-value=9.7e-10  Score=86.21  Aligned_cols=56  Identities=18%  Similarity=0.148  Sum_probs=52.0

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCD   57 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~   57 (222)
                      .++|+++.+++++|.++..+|++++|+.+|+++++++|+++.+++++|.++...++
T Consensus        82 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~  137 (208)
T 3urz_A           82 QKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE  137 (208)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Confidence            46899999999999999999999999999999999999999999999999865543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.88  E-value=3.1e-09  Score=89.72  Aligned_cols=67  Identities=16%  Similarity=0.130  Sum_probs=65.3

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +.+++++|.++..+|++++|+.+|+++++++|+++.+++++|.++..+|++++|...|++++++.|+
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~  262 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN  262 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence            7999999999999999999999999999999999999999999999999999999999999998876

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.86  E-value=5.4e-09  Score=80.86  Aligned_cols=66  Identities=15%  Similarity=0.114  Sum_probs=64.0

Q ss_pred             HHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          9 VGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .++.++|.++..+|++++|+.+|+++++++|+++.+++++|.++..+|++++|...+++++.+.|+
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  154 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN  154 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence            899999999999999999999999999999999999999999999999999999999999988775

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.84  E-value=8.7e-09  Score=73.25  Aligned_cols=72  Identities=17%  Similarity=0.278  Sum_probs=68.1

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..|..+.+++.+|.++...|++++|+.+|+++++++|++..++.++|.++...+++++|...+++++...|+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~   82 (133)
T 2lni_A           11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT   82 (133)
T ss_dssp             SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            457889999999999999999999999999999999999999999999999999999999999999987664

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.84  E-value=1.9e-08  Score=70.34  Aligned_cols=72  Identities=21%  Similarity=0.287  Sum_probs=52.6

Q ss_pred             CCCCC-HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          3 KTPFF-KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~-~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+|.. +.+++.+|.++...|++++|+..|+++++.+|++..++.+++.++...|++++|...+++++...|+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~   75 (125)
T 1na0_A            3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN   75 (125)
T ss_dssp             ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc
Confidence            35555 6777778888888888888888888888888877777788888877778888887777777766553

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.84  E-value=9.9e-09  Score=84.91  Aligned_cols=72  Identities=14%  Similarity=0.036  Sum_probs=64.2

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHh
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTD-YEARMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~   74 (222)
                      .+|+++.+++++|.++..+|++++|+..|+++++++|+++.++.|+|.++...|++.+ +.+++++++++.|+
T Consensus       195 ~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~  267 (291)
T 3mkr_A          195 KCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS  267 (291)
T ss_dssp             HSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred             hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence            4789999999999999999999999999999999999999999999999999999876 56788888888876

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.83  E-value=4.9e-09  Score=79.75  Aligned_cols=68  Identities=10%  Similarity=0.014  Sum_probs=58.7

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF--PDAYCNLAHCLQIVCDWTDYEARMKKLVS   70 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~--~~a~~~l~~~~~~~~~~~~a~~~~~~~~~   70 (222)
                      .+|+++.+++++|.++...|++++|+.+|+++++++|++  +.++.+++.++...|+.++|...|++++.
T Consensus       103 ~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          103 ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            478889999999999999999999999999999998876  56888999999999999888888887764

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.83  E-value=9.3e-09  Score=70.29  Aligned_cols=64  Identities=19%  Similarity=0.311  Sum_probs=61.0

Q ss_pred             HHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695         11 ILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPD-AYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus        11 ~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~-a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+++|.++...|++++|+..|+++++++|+++. +++++|.++...|++++|...|++++++.|+
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~   67 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD   67 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            367899999999999999999999999999999 9999999999999999999999999988876

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.82  E-value=6.4e-09  Score=81.81  Aligned_cols=69  Identities=14%  Similarity=0.109  Sum_probs=47.4

Q ss_pred             CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+..+++++|.++..+|++++|+.+|+++++++|+++.++.++|.++..+|++++|+..++++++..|+
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~  108 (228)
T 4i17_A           40 QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG  108 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence            566666667777777777777777777777777776667777777777777777777666666666554

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.81  E-value=1.8e-08  Score=71.18  Aligned_cols=70  Identities=14%  Similarity=0.044  Sum_probs=66.6

Q ss_pred             CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      |..+..++.+|.++...|++++|+..|+++++++|+++.++.++|.++...|++++|...+++++...|+
T Consensus         1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~   70 (131)
T 1elr_A            1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE   70 (131)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc
Confidence            4457899999999999999999999999999999999999999999999999999999999999998886

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.81  E-value=6.6e-09  Score=78.60  Aligned_cols=72  Identities=15%  Similarity=0.228  Sum_probs=66.6

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHHHHh
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHC-LQIVCDW--TDYEARMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~-~~~~~~~--~~a~~~~~~~~~~~~~   74 (222)
                      .+|+++.+|..+|.++...|++++|+.+|+++++++|+++.++.++|.+ +...|++  ++|...+++++...|+
T Consensus        39 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~  113 (177)
T 2e2e_A           39 ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSN  113 (177)
T ss_dssp             HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTT
T ss_pred             hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCC
Confidence            5799999999999999999999999999999999999999999999999 7789998  9999999999988775

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.81  E-value=4.5e-09  Score=82.72  Aligned_cols=73  Identities=14%  Similarity=0.102  Sum_probs=68.9

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFP-------DAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~-------~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..+|+++.++.++|.++..+|++++|+.+|+++++++|+++       .++.++|.++...|++++|+..|+++++..|+
T Consensus        70 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~  149 (228)
T 4i17_A           70 KKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK  149 (228)
T ss_dssp             HTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred             HhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence            46899999999999999999999999999999999999999       77999999999999999999999999987665

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.80  E-value=7.3e-09  Score=91.73  Aligned_cols=73  Identities=10%  Similarity=0.039  Sum_probs=69.7

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..+|+++.+++++|.++.++|++++|+.+|++|++++|+++.+++++|.++..+|++++|++.+++++++.|+
T Consensus        34 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~  106 (477)
T 1wao_1           34 ELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH  106 (477)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             HhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            3579999999999999999999999999999999999999999999999999999999999999999988764

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=98.79  E-value=1.1e-08  Score=85.87  Aligned_cols=72  Identities=15%  Similarity=0.150  Sum_probs=57.7

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+|+++.+|+++|.++..+|++++|+.+|+++++++|+++.++.++|.++...|++++|...+++++.+.|+
T Consensus       242 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  313 (365)
T 4eqf_A          242 VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRK  313 (365)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            467777888888888888888888888888888888888888888888888888888888888888877775

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.78  E-value=2.7e-08  Score=72.06  Aligned_cols=73  Identities=10%  Similarity=-0.060  Sum_probs=68.8

Q ss_pred             CCCCCC---HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFF---KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~---~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..+|++   ..++.++|.++..+|++++|+.+|+++++++|+++.+++++|.++...|++++|...+++++...|+
T Consensus        56 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  131 (148)
T 2dba_A           56 GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK  131 (148)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred             HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            457877   8999999999999999999999999999999999999999999999999999999999999987765

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.78  E-value=1.1e-08  Score=81.82  Aligned_cols=70  Identities=14%  Similarity=0.094  Sum_probs=37.3

Q ss_pred             CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695          4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      +|+++.++.++|.++...|++++|+.+|+++++++|+++.++.++|.++...|++++|...+++++...|
T Consensus        73 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  142 (275)
T 1xnf_A           73 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP  142 (275)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            4555555555555555555555555555555555555555555555555555555555555555554443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.77  E-value=9.5e-09  Score=77.72  Aligned_cols=72  Identities=10%  Similarity=-0.040  Sum_probs=67.9

Q ss_pred             CCCCCHHHHHHHHHh-cccCCCc--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          3 KTPFFKVGILFSNSS-FPSPGNI--PEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~-l~~~g~~--~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+|+++.++.++|.+ +...|++  ++|+.+|+++++++|+++.++.++|.++...|++++|...+++++...|+
T Consensus        73 ~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  147 (177)
T 2e2e_A           73 LRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP  147 (177)
T ss_dssp             HHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred             cCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence            468999999999999 8899999  99999999999999999999999999999999999999999999877664

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.76  E-value=8e-09  Score=80.09  Aligned_cols=67  Identities=9%  Similarity=0.038  Sum_probs=58.4

Q ss_pred             CHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695          7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      ++.+++++|.++..+|++++|+.+|+++++++|+++.+++++|.++...|++++|...++++++..|
T Consensus        36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~  102 (213)
T 1hh8_A           36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR  102 (213)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC
Confidence            6788888999999999999999999999999998888899999998888999998888888887554

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.76  E-value=3e-08  Score=76.77  Aligned_cols=65  Identities=9%  Similarity=0.127  Sum_probs=59.1

Q ss_pred             CHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ....++++|.++...|++++|+..|++++  +| ++.+++++|.++...|++++|...+++++...|+
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~   69 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH   69 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            35678999999999999999999999995  55 7899999999999999999999999999988765

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.76  E-value=4.4e-08  Score=68.38  Aligned_cols=72  Identities=21%  Similarity=0.294  Sum_probs=68.1

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+|+++.+++.+|.++...|++++|+..|+++++++|+++.++.+++.++...|++++|...+++++...|+
T Consensus        38 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  109 (125)
T 1na0_A           38 LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN  109 (125)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence            468899999999999999999999999999999999999999999999999999999999999999877664

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.75  E-value=1.3e-08  Score=71.92  Aligned_cols=71  Identities=11%  Similarity=0.067  Sum_probs=66.4

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF-------PDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~-------~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      .+|+++.++.++|.++...|++++|+.+|++++++.|++       +.++.++|.++...|++++|...+++++...+
T Consensus        33 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  110 (131)
T 1elr_A           33 LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR  110 (131)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             cCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            478999999999999999999999999999999999988       99999999999999999999999999886544

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.75  E-value=3.4e-08  Score=68.34  Aligned_cols=69  Identities=23%  Similarity=0.192  Sum_probs=64.9

Q ss_pred             CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +.+..++.+|.++...|++++|+.+|+++++++|+++.++.++|.++...|++++|...+++++...|+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~   70 (118)
T 1elw_A            2 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD   70 (118)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence            346889999999999999999999999999999999999999999999999999999999999987664

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=98.75  E-value=1.9e-08  Score=84.28  Aligned_cols=74  Identities=18%  Similarity=0.124  Sum_probs=69.8

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      ..+|+++.+|+++|.++..+|++++|+.+|+++++++|+++.++.++|.++...|++++|...+++++...|+.
T Consensus        93 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  166 (365)
T 4eqf_A           93 LQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKY  166 (365)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH
T ss_pred             HhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccc
Confidence            35799999999999999999999999999999999999999999999999999999999999999999988864

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.75  E-value=8.6e-09  Score=90.67  Aligned_cols=67  Identities=9%  Similarity=0.145  Sum_probs=63.7

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..+|+++|.++.++|++++|+.+|++|++++|+++.+++++|.++..++++++|...|++++++.|+
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~  383 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ  383 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            7999999999999999999999999999999999999999999999999999999999999988775

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.74  E-value=1.9e-08  Score=70.94  Aligned_cols=72  Identities=14%  Similarity=0.176  Sum_probs=67.5

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+|.++..+..+|.++...|++++|+..|+++++++|+++.++.++|.++...|++++|...+++++...|+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~   78 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA   78 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc
Confidence            456778999999999999999999999999999999999999999999999999999999999999987664

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.73  E-value=9.8e-09  Score=88.06  Aligned_cols=72  Identities=21%  Similarity=0.159  Sum_probs=68.4

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+|.++.+++++|.++..+|++++|+.+|++|++++|+++.+++++|.++..++++++|...+++++++.|+
T Consensus       268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~  339 (370)
T 1ihg_A          268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE  339 (370)
T ss_dssp             GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            457788999999999999999999999999999999999999999999999999999999999999988775

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.73  E-value=2.8e-08  Score=89.09  Aligned_cols=73  Identities=15%  Similarity=0.142  Sum_probs=51.6

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..+|+++.+++++|.++..+|++++|+++|+++++++|+++.++.++|.++...|++++|.+.++++++..|+
T Consensus        17 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   89 (568)
T 2vsy_A           17 RHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE   89 (568)
T ss_dssp             ----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            4567777777777777777777777777777777777777777777777777777777777777777776554

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.72  E-value=2.2e-08  Score=82.28  Aligned_cols=70  Identities=16%  Similarity=0.115  Sum_probs=67.0

Q ss_pred             CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      |.++.++..+|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++|+..+++++++.|+
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~   70 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ   70 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence            6789999999999999999999999999999999999999999999999999999999999999877665

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.72  E-value=3.4e-08  Score=77.93  Aligned_cols=69  Identities=19%  Similarity=0.198  Sum_probs=34.8

Q ss_pred             CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy17695          4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIV   72 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~   72 (222)
                      +|+++.++.++|.++..+|++++|+.+|+++++++|+++.++.++|.++...|++++|...+++++++.
T Consensus       169 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          169 APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD  237 (258)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence            344445555555555555555555555555555555555555555555555555555555555554444

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.70  E-value=8.8e-08  Score=67.43  Aligned_cols=72  Identities=21%  Similarity=0.282  Sum_probs=60.3

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+|+++.++..+|.++...|++++|+..|+++++.+|++..++.+++.++...|++++|...+++++...|+
T Consensus        30 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  101 (136)
T 2fo7_A           30 LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  101 (136)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred             cCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence            357788888888888888888888888888888888888888888888888888888888888888776654

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.70  E-value=1e-07  Score=71.12  Aligned_cols=70  Identities=9%  Similarity=-0.023  Sum_probs=35.7

Q ss_pred             CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695          4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      +|+++.++.++|.++...|++++|+..|+++++++|+++.++.++|.++...|++++|...+++++...|
T Consensus        72 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~  141 (186)
T 3as5_A           72 APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP  141 (186)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc
Confidence            3444555555555555555555555555555555555555555555555555555555555555444433

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.70  E-value=3.8e-08  Score=82.16  Aligned_cols=72  Identities=15%  Similarity=0.151  Sum_probs=53.9

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+|+++.+++++|.++...|++++|+.+|+++++++|+++.++.++|.++...|++++|...+++++.+.|+
T Consensus       246 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  317 (368)
T 1fch_A          246 VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK  317 (368)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred             hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            356777777777777777777777777777777777777777777777777777777777777777777665

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.70  E-value=8.7e-08  Score=71.46  Aligned_cols=74  Identities=12%  Similarity=0.014  Sum_probs=69.1

Q ss_pred             CCCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +..+|+++.++..+|.++...|++++|+..|+++++++|++..++.++|.++...|++++|...+++++...|+
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~  108 (186)
T 3as5_A           35 YDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI  108 (186)
T ss_dssp             CCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999887664

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.70  E-value=9.9e-09  Score=86.76  Aligned_cols=66  Identities=12%  Similarity=0.033  Sum_probs=60.6

Q ss_pred             HHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          9 VGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+++++|.+|..+|++++|+.+|+++++++|+++.+++++|.++..+|++++|...|++++++.|+
T Consensus       231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~  296 (338)
T 2if4_A          231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD  296 (338)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            489999999999999999999999999999999999999999999999999999999999988876

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.69  E-value=5.7e-08  Score=78.08  Aligned_cols=73  Identities=12%  Similarity=0.093  Sum_probs=68.6

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF---PDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~---~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..+|+++..++.+|..+...|++++|+..|+++++.+|++   +.+++++|.++...|++++|...|++++...|+
T Consensus         9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~   84 (261)
T 3qky_A            9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI   84 (261)
T ss_dssp             --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC
Confidence            3578999999999999999999999999999999999999   999999999999999999999999999998775

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.67  E-value=2.8e-08  Score=91.64  Aligned_cols=74  Identities=7%  Similarity=-0.057  Sum_probs=67.5

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      ..+|+++++++++|.++..+|++++|+..|+++++++|+++.+++++|.++...|++++|++.|++++++.|+.
T Consensus       427 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~  500 (681)
T 2pzi_A          427 VDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE  500 (681)
T ss_dssp             -CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred             cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            46799999999999999999999999999999999999999999999999999999999999999999988863

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=98.67  E-value=1.3e-08  Score=89.77  Aligned_cols=73  Identities=12%  Similarity=0.053  Sum_probs=70.0

Q ss_pred             CCCCCCHHHHHHHHHhcccC--------CCcHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17695          2 MKTPFFKVGILFSNSSFPSP--------GNIPEAIQSYRTALKLKP---DFPDAYCNLAHCLQIVCDWTDYEARMKKLVS   70 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~--------g~~~eA~~~~~~Al~l~P---~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~   70 (222)
                      ..+|+++.+|+++|.+|..+        |++++|+.+|++|++++|   +++.+++++|.++...|++++|.+.|+++++
T Consensus       207 ~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  286 (474)
T 4abn_A          207 QMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA  286 (474)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            35899999999999999999        999999999999999999   9999999999999999999999999999998


Q ss_pred             HHHh
Q psy17695         71 IVAE   74 (222)
Q Consensus        71 ~~~~   74 (222)
                      +.|+
T Consensus       287 l~p~  290 (474)
T 4abn_A          287 LDPA  290 (474)
T ss_dssp             HCTT
T ss_pred             hCCC
Confidence            8876

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.67  E-value=3.4e-08  Score=73.83  Aligned_cols=68  Identities=18%  Similarity=0.218  Sum_probs=64.2

Q ss_pred             CHHHHHHHHHhcccCCCcHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17695          7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKL------------------KPDFPDAYCNLAHCLQIVCDWTDYEARMKKL   68 (222)
Q Consensus         7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l------------------~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~   68 (222)
                      .+..+..+|..+...|++++|+..|++|+++                  +|.+..+++|+|.++..+|+|++|...++++
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            4678999999999999999999999999999                  7888899999999999999999999999999


Q ss_pred             HHHHHh
Q psy17695         69 VSIVAE   74 (222)
Q Consensus        69 ~~~~~~   74 (222)
                      +.+.|+
T Consensus        90 l~~~p~   95 (162)
T 3rkv_A           90 LKREET   95 (162)
T ss_dssp             HHHSTT
T ss_pred             HhcCCc
Confidence            998876

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.66  E-value=3.3e-08  Score=81.36  Aligned_cols=70  Identities=11%  Similarity=-0.041  Sum_probs=37.0

Q ss_pred             CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695          4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      +|+....+...+..+...++.++|+..|+++++++|+++.+++++|.++...|++++|.+.++++++..|
T Consensus       181 ~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p  250 (287)
T 3qou_A          181 DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDL  250 (287)
T ss_dssp             GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc
Confidence            3444444444555555555555555555555555555555555555555555555555555555555444

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.65  E-value=2.3e-08  Score=84.36  Aligned_cols=71  Identities=11%  Similarity=0.064  Sum_probs=67.6

Q ss_pred             CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17695          4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF---------------PDAYCNLAHCLQIVCDWTDYEARMKKL   68 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~---------------~~a~~~l~~~~~~~~~~~~a~~~~~~~   68 (222)
                      +|+++.++.++|.++..+|++++|+.+|++|++++|++               ..++.|+|.++..+|++++|+..++++
T Consensus       143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  222 (336)
T 1p5q_A          143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA  222 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            46778999999999999999999999999999999999               699999999999999999999999999


Q ss_pred             HHHHHh
Q psy17695         69 VSIVAE   74 (222)
Q Consensus        69 ~~~~~~   74 (222)
                      +++.|+
T Consensus       223 l~~~p~  228 (336)
T 1p5q_A          223 LELDSN  228 (336)
T ss_dssp             HHHCTT
T ss_pred             HHhCCC
Confidence            998876

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=98.65  E-value=4.4e-08  Score=82.91  Aligned_cols=70  Identities=31%  Similarity=0.458  Sum_probs=37.7

Q ss_pred             CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695          4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      +|+++.++.++|.++..+|++++|+..|+++++++|+++.++.++|.++...|++++|...++++++..|
T Consensus       233 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  302 (388)
T 1w3b_A          233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP  302 (388)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT
T ss_pred             CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence            4555555555555555555555555555555555555555555555555555555555555555554443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=98.65  E-value=4.8e-08  Score=82.67  Aligned_cols=72  Identities=29%  Similarity=0.436  Sum_probs=53.9

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+|.++.+|+.+|.++...|++++|+.+|+++++++|+++.++.++|.++...|++++|...+++++...|+
T Consensus        62 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  133 (388)
T 1w3b_A           62 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD  133 (388)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT
T ss_pred             cCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            357777777777777777777777777777777777777777777777777777777777777777766554

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.65  E-value=7e-09  Score=95.63  Aligned_cols=73  Identities=10%  Similarity=0.019  Sum_probs=66.9

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      ..+|+++.+|+++|.++..+|++++|+.+|++|++++|+++.++.++|.++..+|++++ ++.|++++++.|+.
T Consensus       461 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~  533 (681)
T 2pzi_A          461 ERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV  533 (681)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC
T ss_pred             ccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch
Confidence            35799999999999999999999999999999999999999999999999999999999 99999999887763

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=98.65  E-value=6e-08  Score=85.56  Aligned_cols=73  Identities=15%  Similarity=0.179  Sum_probs=69.0

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCc-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNI-PEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~-~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ...|+++.+++.+|.++..+|++ ++|+.+|+++++++|+++.++.++|.++...|++++|.++|++++++.|+
T Consensus        96 ~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  169 (474)
T 4abn_A           96 GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN  169 (474)
T ss_dssp             TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC
T ss_pred             ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            35788999999999999999999 99999999999999999999999999999999999999999999877664

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.64  E-value=5.2e-08  Score=69.29  Aligned_cols=67  Identities=19%  Similarity=0.124  Sum_probs=62.5

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFP---DAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~---~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +++++.+|.++...|++++|+..|+++++.+|+++   .+++++|.++...|++++|...+++++...|+
T Consensus         2 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~   71 (129)
T 2xev_A            2 ARTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT   71 (129)
T ss_dssp             -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence            35688999999999999999999999999999999   89999999999999999999999999988775

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.64  E-value=5.3e-08  Score=77.80  Aligned_cols=71  Identities=14%  Similarity=0.175  Sum_probs=67.6

Q ss_pred             CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +|.++.+++.+|.++...|++++|+.+|+++++++|+++.++.++|.++...|++++|...+++++...|+
T Consensus        39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~  109 (275)
T 1xnf_A           39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT  109 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc
Confidence            35788999999999999999999999999999999999999999999999999999999999999988775

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.63  E-value=1.3e-07  Score=69.76  Aligned_cols=68  Identities=12%  Similarity=0.083  Sum_probs=64.8

Q ss_pred             CHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+..+..+|.++...|++++|+..|+++++++|+++.++.++|.++...|++++|...+++++...|+
T Consensus        12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~   79 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK   79 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            46789999999999999999999999999999999999999999999999999999999999988765

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=98.62  E-value=1.3e-07  Score=74.17  Aligned_cols=73  Identities=14%  Similarity=0.129  Sum_probs=64.2

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..+|+++.++..+|.++...|++++|+..|+++++++|++..++.++|.++...|++++|...++++++..|+
T Consensus        51 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  123 (243)
T 2q7f_A           51 EENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME  123 (243)
T ss_dssp             TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC
T ss_pred             HhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            4578889999999999999999999999999999999999999999999999999999999988888877654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.62  E-value=1.4e-07  Score=66.36  Aligned_cols=66  Identities=21%  Similarity=0.312  Sum_probs=61.4

Q ss_pred             HHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          9 VGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+++.+|.++...|++++|+..|+++++.+|++..++.+++.++...|++++|...+++++...|.
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~   67 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR   67 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence            578999999999999999999999999999999999999999999999999999999999887654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.62  E-value=8e-08  Score=80.13  Aligned_cols=73  Identities=16%  Similarity=0.112  Sum_probs=63.0

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..+|+++.++.++|.++..+|++++|+.+|+++++++|+++.++.++|.++...|++++|...+++++...|+
T Consensus        92 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  164 (368)
T 1fch_A           92 QQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA  164 (368)
T ss_dssp             HSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT
T ss_pred             HhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            3578888888889999888899999999999999888888888888888888888888888888888877665

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.61  E-value=7.5e-08  Score=75.92  Aligned_cols=72  Identities=17%  Similarity=0.241  Sum_probs=68.7

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+|+++.++.++|.++...|++++|+.+|+++++++|+++.++.++|.++...|++++|...+++++...|+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~  205 (258)
T 3uq3_A          134 VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN  205 (258)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH
Confidence            578889999999999999999999999999999999999999999999999999999999999999987765

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.61  E-value=7.8e-08  Score=77.26  Aligned_cols=73  Identities=10%  Similarity=0.034  Sum_probs=67.5

Q ss_pred             CCCCCC---HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH--------cCCHHHHHHHHHH
Q psy17695          2 MKTPFF---KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF---PDAYCNLAHCLQI--------VCDWTDYEARMKK   67 (222)
Q Consensus         2 ~~~P~~---~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~---~~a~~~l~~~~~~--------~~~~~~a~~~~~~   67 (222)
                      ..+|++   +.+++.+|.++..+|++++|+..|++++++.|++   +.+++++|.++..        .|++++|...+++
T Consensus        43 ~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~  122 (261)
T 3qky_A           43 TYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQL  122 (261)
T ss_dssp             GGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHH
T ss_pred             HhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHH
Confidence            457888   9999999999999999999999999999998854   6789999999999        9999999999999


Q ss_pred             HHHHHHh
Q psy17695         68 LVSIVAE   74 (222)
Q Consensus        68 ~~~~~~~   74 (222)
                      ++...|+
T Consensus       123 ~l~~~p~  129 (261)
T 3qky_A          123 FIDRYPN  129 (261)
T ss_dssp             HHHHCTT
T ss_pred             HHHHCcC
Confidence            9988876

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.60  E-value=1.1e-07  Score=73.29  Aligned_cols=72  Identities=17%  Similarity=0.044  Sum_probs=51.4

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+|+++.++..+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|...+++++...|+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~   74 (225)
T 2vq2_A            3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD   74 (225)
T ss_dssp             -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            456667777777777777777777777777777777777777777777777777777777777777665543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.59  E-value=1.7e-08  Score=69.79  Aligned_cols=62  Identities=16%  Similarity=0.064  Sum_probs=56.3

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHH
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF------PDAYCNLAHCLQIVCDWTDYEA   63 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~------~~a~~~l~~~~~~~~~~~~a~~   63 (222)
                      ..+|+++.+++++|.++..+|++++|+.+|+++++++|++      ..++.++|.++..+|+++++..
T Consensus        32 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   99 (111)
T 2l6j_A           32 TAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVV   99 (111)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSS
T ss_pred             hcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHh
Confidence            3579999999999999999999999999999999999999      8999999999988887766554

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.58  E-value=2.5e-07  Score=75.51  Aligned_cols=71  Identities=13%  Similarity=0.161  Sum_probs=44.1

Q ss_pred             CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +|+++.++.++|.++...|++++|+..|+++++++|+++.++.++|.++...|++++|...+++++...|+
T Consensus       202 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  272 (327)
T 3cv0_A          202 RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG  272 (327)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence            45566666666666666666666666666666666666666666666666666666666666666655554

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.58  E-value=7.4e-08  Score=64.13  Aligned_cols=54  Identities=26%  Similarity=0.286  Sum_probs=50.9

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVC   56 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~   56 (222)
                      .+|+++.++.++|.++..+|++++|+.+|+++++++|+++.++.++|.++...|
T Consensus        38 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           38 LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             cCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence            478999999999999999999999999999999999999999999999987654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.55  E-value=5.8e-08  Score=79.91  Aligned_cols=69  Identities=16%  Similarity=0.002  Sum_probs=64.8

Q ss_pred             CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695          5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      |++++.++.+|..+...|++++|+..|+++++++|+++.++.++|.++...|++++|++.+++++...|
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p  182 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ  182 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc
Confidence            788899999999999999999999999999999999999999999999999999999999988765444

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.55  E-value=2.7e-07  Score=71.08  Aligned_cols=71  Identities=23%  Similarity=0.222  Sum_probs=52.7

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      .+|.+..++.++|.++...|++++|+..|+++++.+|+++.++.+++.++...|++++|...+++++...|
T Consensus       108 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  178 (225)
T 2vq2_A          108 TYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE  178 (225)
T ss_dssp             TCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            34566777777777777777777777777777777777777777777777777777777777777776655

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=98.53  E-value=3.9e-07  Score=71.31  Aligned_cols=72  Identities=11%  Similarity=0.018  Sum_probs=64.6

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+|+++.++..+|.++..+|++++|+..|+++++++|+++.++.++|.++...|++++|...+++++...|+
T Consensus        86 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~  157 (243)
T 2q7f_A           86 LDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN  157 (243)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT
T ss_pred             cCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence            468889999999999999999999999999999999999999999999999999999999999988877664

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.51  E-value=1.2e-07  Score=83.35  Aligned_cols=71  Identities=14%  Similarity=0.096  Sum_probs=67.2

Q ss_pred             CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17695          4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF---------------PDAYCNLAHCLQIVCDWTDYEARMKKL   68 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~---------------~~a~~~l~~~~~~~~~~~~a~~~~~~~   68 (222)
                      +|+++.++.++|.++.+.|++++|+.+|++|++++|++               ..++.|+|.|+..+++|++|+..++++
T Consensus       264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  343 (457)
T 1kt0_A          264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA  343 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            35678899999999999999999999999999999999               799999999999999999999999999


Q ss_pred             HHHHHh
Q psy17695         69 VSIVAE   74 (222)
Q Consensus        69 ~~~~~~   74 (222)
                      +.+.|+
T Consensus       344 l~~~p~  349 (457)
T 1kt0_A          344 LGLDSA  349 (457)
T ss_dssp             HHHSTT
T ss_pred             HhcCCc
Confidence            998876

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.49  E-value=1.1e-07  Score=78.44  Aligned_cols=71  Identities=20%  Similarity=0.189  Sum_probs=54.5

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      .+|+++.+++++|.++..+|++++|+..|+++++++|++..++.++|.++...|++++|...+++++...|
T Consensus        32 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  102 (359)
T 3ieg_A           32 GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP  102 (359)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCC
T ss_pred             hCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence            46777777777777777777777777777777777777777777777777777777777777777766555

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.49  E-value=1.6e-08  Score=76.90  Aligned_cols=69  Identities=13%  Similarity=0.022  Sum_probs=60.0

Q ss_pred             CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy17695          4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIV   72 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~   72 (222)
                      +|...+.++.+|..+...|++++|+..|+++++++|+++.++.++|.++...|++++|+..+++++...
T Consensus         2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~   70 (176)
T 2r5s_A            2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY   70 (176)
T ss_dssp             ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG
T ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc
Confidence            566677889999999999999999999999999999999999999999999999999999888776443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.49  E-value=2.5e-07  Score=79.35  Aligned_cols=73  Identities=14%  Similarity=0.147  Sum_probs=48.9

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..+|+++..++.+|..+...|++++|+..|+++++.+|+++.+++++|.++...|++++|...++++++..|+
T Consensus        20 ~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~   92 (450)
T 2y4t_A           20 FQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD   92 (450)
T ss_dssp             ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             cccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            3456666777777777777777777777777777777777777777777777777777777777666665543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.49  E-value=3.2e-07  Score=74.89  Aligned_cols=72  Identities=13%  Similarity=0.107  Sum_probs=62.1

Q ss_pred             CCCCCHHHHHHHHHhcccCC-CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          3 KTPFFKVGILFSNSSFPSPG-NIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g-~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+|+++.++..+|.++...| ++++|+.+|+++++++|+++.++.++|.++...|++++|...+++++...|+
T Consensus        85 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  157 (330)
T 3hym_B           85 LYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG  157 (330)
T ss_dssp             HCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT
T ss_pred             hCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc
Confidence            46888888888888888888 8888888888888888888888888888888888888888888888877665

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.48  E-value=1.9e-07  Score=73.81  Aligned_cols=70  Identities=19%  Similarity=0.140  Sum_probs=47.2

Q ss_pred             CCCC-HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695          4 TPFF-KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         4 ~P~~-~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      +|++ +.+++.+|.++...|++++|+.+|+++++++|+++.++.++|.++...|++++|.+.+++++...|
T Consensus        32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~  102 (252)
T 2ho1_A           32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS  102 (252)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            3444 566667777777777777777777777777777777777777777777777777766666665544

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.48  E-value=4.4e-07  Score=69.89  Aligned_cols=69  Identities=23%  Similarity=0.227  Sum_probs=64.6

Q ss_pred             CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17695          6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFP----------------DAYCNLAHCLQIVCDWTDYEARMKKLV   69 (222)
Q Consensus         6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~----------------~a~~~l~~~~~~~~~~~~a~~~~~~~~   69 (222)
                      ..+..+..+|.++...|++++|+..|++++++.|+++                .++.++|.++...|+|++|...+++++
T Consensus        36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al  115 (198)
T 2fbn_A           36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL  115 (198)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            3467899999999999999999999999999999987                899999999999999999999999999


Q ss_pred             HHHHh
Q psy17695         70 SIVAE   74 (222)
Q Consensus        70 ~~~~~   74 (222)
                      ...|+
T Consensus       116 ~~~p~  120 (198)
T 2fbn_A          116 KIDKN  120 (198)
T ss_dssp             HHSTT
T ss_pred             HhCcc
Confidence            88775

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.48  E-value=1.6e-07  Score=77.66  Aligned_cols=71  Identities=10%  Similarity=-0.096  Sum_probs=66.8

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPD-AYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~-a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      .+|++..+|.++|.++...|++++|+..|+++++++|+++. +|.+++.++...|++++|...|+++++..|
T Consensus        94 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p  165 (308)
T 2ond_A           94 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR  165 (308)
T ss_dssp             TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT
T ss_pred             hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence            58999999999999999999999999999999999999987 999999999999999999999999986554

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.46  E-value=6.4e-07  Score=73.01  Aligned_cols=72  Identities=15%  Similarity=0.064  Sum_probs=68.6

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+|+++.++..+|.++...|++++|+.+|+++++++|+++.++.++|.++...|++++|...++++++..|+
T Consensus       167 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  238 (327)
T 3cv0_A          167 MNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG  238 (327)
T ss_dssp             HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            468899999999999999999999999999999999999999999999999999999999999999887765

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.46  E-value=5.9e-07  Score=73.96  Aligned_cols=72  Identities=15%  Similarity=0.146  Sum_probs=68.6

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+|+++.++..+|.++..+|++++|+..|+++++++|+++.++.++|.++...|++++|...+++++...|+
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  220 (359)
T 3ieg_A          149 VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD  220 (359)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             hCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc
Confidence            478999999999999999999999999999999999999999999999999999999999999999987765

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.46  E-value=4e-07  Score=71.95  Aligned_cols=66  Identities=11%  Similarity=0.006  Sum_probs=33.4

Q ss_pred             CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17695          4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLV   69 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~   69 (222)
                      +|.++.++.++|.++...|++++|+.+|+++++++|+++.++.+++.++...|++++|...+++++
T Consensus       137 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  202 (252)
T 2ho1_A          137 YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFA  202 (252)
T ss_dssp             CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            344445555555555555555555555555555555555555555555555555555554444443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.45  E-value=4.6e-08  Score=66.72  Aligned_cols=65  Identities=20%  Similarity=0.229  Sum_probs=55.9

Q ss_pred             CCCCCCHH-HHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKV-GILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~-~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..+|+++. +++++|.++..+|++++|+.+|+++++++|++..++.+        +.+.++...|+++....|+
T Consensus        28 ~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~~p~   93 (99)
T 2kc7_A           28 QTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMVMDILNFYNKDMYNQLE   93 (99)
T ss_dssp             HHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHHHHHCCTTHHHHC
T ss_pred             HHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHHHHHHHHhccCcc
Confidence            35799999 99999999999999999999999999999999999865        3456677777777777765

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.45  E-value=2e-07  Score=76.16  Aligned_cols=71  Identities=14%  Similarity=0.064  Sum_probs=41.5

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      .+|+++.+|..+|.++...|++++|+.+|++++++.|++..++.++|.++...|++++|...+++++...|
T Consensus       120 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~  190 (330)
T 3hym_B          120 LEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP  190 (330)
T ss_dssp             TCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             hCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC
Confidence            45555566666666666666666666666666666666555555566665556666555555555554433

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.43  E-value=5e-07  Score=71.25  Aligned_cols=68  Identities=15%  Similarity=0.063  Sum_probs=64.2

Q ss_pred             CHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFP---DAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~---~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+..++++|..+...|++++|+..|+++++..|+++   .+++++|.++...|+|++|+..|+++++..|+
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~   73 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT   73 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC
Confidence            578899999999999999999999999999999874   79999999999999999999999999998886

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.43  E-value=2e-07  Score=77.04  Aligned_cols=72  Identities=14%  Similarity=0.078  Sum_probs=65.9

Q ss_pred             CCCCCHHHHHHHHHhcc-------cCCCc-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17695          3 KTPFFKVGILFSNSSFP-------SPGNI-------PEAIQSYRTALK-LKPDFPDAYCNLAHCLQIVCDWTDYEARMKK   67 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~-------~~g~~-------~eA~~~~~~Al~-l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~   67 (222)
                      .+|+++.+|+++|..+.       ..|++       ++|+..|++|++ ++|++..+|.++|.++...|++++|.+.|++
T Consensus        45 ~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~  124 (308)
T 2ond_A           45 VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNR  124 (308)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            47999999999999987       46887       999999999999 7999999999999999999999999999999


Q ss_pred             HHHHHHh
Q psy17695         68 LVSIVAE   74 (222)
Q Consensus        68 ~~~~~~~   74 (222)
                      ++++.|+
T Consensus       125 al~~~p~  131 (308)
T 2ond_A          125 LLAIEDI  131 (308)
T ss_dssp             HHTSSSS
T ss_pred             HHhcccc
Confidence            9876553

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.42  E-value=4.7e-07  Score=77.63  Aligned_cols=71  Identities=20%  Similarity=0.198  Sum_probs=67.4

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      .+|+++.+++.+|.++..+|++++|+..|+++++++|+++.++.++|.++...|++++|...+++++...|
T Consensus        55 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  125 (450)
T 2y4t_A           55 GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP  125 (450)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC
T ss_pred             hCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            47999999999999999999999999999999999999999999999999999999999999999886554

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.41  E-value=6.7e-07  Score=79.55  Aligned_cols=71  Identities=8%  Similarity=-0.084  Sum_probs=67.7

Q ss_pred             CCCC-HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          4 TPFF-KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         4 ~P~~-~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +|++ ..+|.++|.++...|++++|+..|+++++++|+++.++..++.++...|+|++|.+.+++++++.|+
T Consensus       511 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~  582 (597)
T 2xpi_A          511 NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN  582 (597)
T ss_dssp             CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             chhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence            5665 8999999999999999999999999999999999999999999999999999999999999988876

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.38  E-value=4.5e-07  Score=72.41  Aligned_cols=61  Identities=16%  Similarity=0.163  Sum_probs=30.3

Q ss_pred             HHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17695          9 VGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLV   69 (222)
Q Consensus         9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~   69 (222)
                      .++.++|.++..+|++++|+.+|+++++++|+++.++.++|.++...|++++|...+++++
T Consensus        75 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  135 (272)
T 3u4t_A           75 ADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI  135 (272)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            3344555555555555555555555555555555555555555555555555444444443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.37  E-value=5.1e-08  Score=86.30  Aligned_cols=70  Identities=11%  Similarity=0.054  Sum_probs=65.3

Q ss_pred             CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ++.+.++.++|.++.++|++++|+++|++|++++|+++.++.++|.++..+|++++|++.+++++++.|+
T Consensus         3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~   72 (477)
T 1wao_1            3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK   72 (477)
T ss_dssp             HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT
T ss_pred             HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence            4456778899999999999999999999999999999999999999999999999999999999988765

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.36  E-value=3.5e-07  Score=73.05  Aligned_cols=72  Identities=8%  Similarity=-0.145  Sum_probs=52.2

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF----PDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~----~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..+|+++.++..+|.++..+|++++|+..|+++++ .|++    ..++.++|.++...|++++|...++++++..|+
T Consensus        31 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~  106 (272)
T 3u4t_A           31 AKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT  106 (272)
T ss_dssp             HTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc
Confidence            35677777777777777777777777777777777 3333    344777777777777777777777777776654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.35  E-value=1.8e-07  Score=70.79  Aligned_cols=49  Identities=18%  Similarity=0.223  Sum_probs=42.9

Q ss_pred             CCCCCCCHHHHHHHHHhcccCC-----------CcHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPG-----------NIPEAIQSYRTALKLKPDFPDAYCNLA   49 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g-----------~~~eA~~~~~~Al~l~P~~~~a~~~l~   49 (222)
                      |+++|+++.+|+++|++|..+|           ++++|+++|++|++++|++..++.++-
T Consensus        73 L~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~  132 (158)
T 1zu2_A           73 LLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE  132 (158)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            3579999999999999999885           899999999999999999876655543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.35  E-value=1.6e-06  Score=75.01  Aligned_cols=71  Identities=14%  Similarity=0.042  Sum_probs=64.2

Q ss_pred             CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKL---------KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l---------~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      +..+..+++||.++..+|++++|+.+|++|+++         +|+...++.|+|.++..+|++++|...+++++.+.+..
T Consensus        48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~  127 (472)
T 4g1t_A           48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF  127 (472)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence            345678899999999999999999999999987         78889999999999999999999999999999988863

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.33  E-value=6.1e-07  Score=71.36  Aligned_cols=71  Identities=23%  Similarity=0.273  Sum_probs=66.4

Q ss_pred             CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKL--------KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l--------~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +|....++.++|.++..+|++++|+.+|++++++        +|....++.++|.++...|++++|...+++++...++
T Consensus       123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~  201 (283)
T 3edt_B          123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE  201 (283)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            4667889999999999999999999999999999        7888899999999999999999999999999988765

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.33  E-value=1.5e-06  Score=76.08  Aligned_cols=71  Identities=11%  Similarity=0.032  Sum_probs=42.0

Q ss_pred             CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +|+++.++.++|.++..+|++++|+..|+++++++|+++.++.++|.++...|++++|...+++++...|+
T Consensus       340 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  410 (537)
T 3fp2_A          340 NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV  410 (537)
T ss_dssp             CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence            45555555555655555566666666666666666655555666666666666666666666665555554

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.33  E-value=1.3e-06  Score=76.36  Aligned_cols=71  Identities=17%  Similarity=0.163  Sum_probs=47.6

Q ss_pred             CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +|+++.++..+|.++...|++++|+..|+++++++|+++.++.++|.++...|++++|...+++++...|+
T Consensus       306 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  376 (537)
T 3fp2_A          306 NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT  376 (537)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            56666666666666666666666666666666666666666666666666666666666666666665543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.33  E-value=5.6e-07  Score=78.14  Aligned_cols=70  Identities=17%  Similarity=0.130  Sum_probs=61.6

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      .+| ++.++.++|.++..+|++++|+.+|+++++++|+++.++..+|.++..+|++++|...|++++...|
T Consensus        35 ~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  104 (514)
T 2gw1_A           35 LKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD  104 (514)
T ss_dssp             HCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS
T ss_pred             cCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            356 5889999999999999999999999999999999999999999999999999999999988876554

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.33  E-value=1.8e-06  Score=71.19  Aligned_cols=71  Identities=10%  Similarity=0.018  Sum_probs=52.2

Q ss_pred             CCCCHHHHHHHH--HhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          4 TPFFKVGILFSN--SSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         4 ~P~~~~~~~~lg--~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +|++.......+  .++...|++++|+.+|+++++.+|+++.+++++|.++..+|+|++|++.+++++...|+
T Consensus       160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~  232 (291)
T 3mkr_A          160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG  232 (291)
T ss_dssp             CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            455543333222  33445577777777777777777888888888888999999999999999999888776

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.31  E-value=5e-07  Score=76.20  Aligned_cols=70  Identities=16%  Similarity=0.102  Sum_probs=65.1

Q ss_pred             CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17695          5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFP-----------------DAYCNLAHCLQIVCDWTDYEARMKK   67 (222)
Q Consensus         5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~-----------------~a~~~l~~~~~~~~~~~~a~~~~~~   67 (222)
                      +..+..+.++|..+...|++++|+.+|++|+++.|++.                 .++.|+|.++..+++|++|...+++
T Consensus       176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~  255 (338)
T 2if4_A          176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI  255 (338)
T ss_dssp             HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            34678899999999999999999999999999999987                 4999999999999999999999999


Q ss_pred             HHHHHHh
Q psy17695         68 LVSIVAE   74 (222)
Q Consensus        68 ~~~~~~~   74 (222)
                      ++++.|+
T Consensus       256 al~~~p~  262 (338)
T 2if4_A          256 VLTEEEK  262 (338)
T ss_dssp             HHHHCTT
T ss_pred             HHHhCCC
Confidence            9988775

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.31  E-value=1.3e-06  Score=71.77  Aligned_cols=67  Identities=16%  Similarity=0.099  Sum_probs=61.4

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHh
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF------PDAYCNLAHCLQIV-CDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~------~~a~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~   74 (222)
                      +.++.++|.+|..+|++++|+.+|++|+++.|..      ..++.++|.++... |++++|+..|++++.+.++
T Consensus        77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~  150 (292)
T 1qqe_A           77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ  150 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Confidence            6789999999999999999999999999998764      56899999999996 9999999999999999885

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.31  E-value=2.8e-06  Score=59.25  Aligned_cols=68  Identities=13%  Similarity=-0.064  Sum_probs=61.9

Q ss_pred             CHHHHHHHHHhcccCCCcHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKLK-------PDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~-------P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+.-.+.||..+.+.|++..|+..|++|++..       +..+..+.+||.++.++|+++.|...+++++.+.|+
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~   78 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE   78 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence            46678899999999999999999999999973       456889999999999999999999999999988876

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.30  E-value=2.6e-06  Score=68.55  Aligned_cols=66  Identities=8%  Similarity=-0.071  Sum_probs=51.9

Q ss_pred             CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q psy17695          4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQI----VCDWTDYEARMKKLVSI   71 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~----~~~~~~a~~~~~~~~~~   71 (222)
                      +|+++.+++.+|.++...|++++|+.+|+++++  |+++.+++++|.++..    .+++++|...|+++++.
T Consensus         2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~   71 (273)
T 1ouv_A            2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL   71 (273)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC
Confidence            577888888888888888888888888888887  7778888888888888    88888888888877654

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.30  E-value=1.5e-06  Score=75.37  Aligned_cols=72  Identities=10%  Similarity=0.021  Sum_probs=59.1

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+|+++.++.++|.++...|++++|+..|+++++++|+++.++.++|.++...|++++|...+++++...|+
T Consensus       333 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  404 (514)
T 2gw1_A          333 LDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK  404 (514)
T ss_dssp             TCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred             hChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            567777888888888888888888888888888888888888888888888888888888888888877775

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.30  E-value=8.5e-07  Score=69.91  Aligned_cols=63  Identities=13%  Similarity=0.076  Sum_probs=57.4

Q ss_pred             HHHHHhcccCCCcHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695         12 LFSNSSFPSPGNIPEAIQSYRTALKLKPDFP---DAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus        12 ~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~---~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..+|.++...|++++|+..|+++++..|+++   .++.++|.++..+|++++|...++.+....|+
T Consensus       151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~  216 (225)
T 2yhc_A          151 YSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN  216 (225)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence            6889999999999999999999999999987   78999999999999999999999877755554

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.27  E-value=9.3e-07  Score=77.42  Aligned_cols=71  Identities=10%  Similarity=-0.023  Sum_probs=62.8

Q ss_pred             CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKL-----KPDFP---DAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l-----~P~~~---~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      |+-+..+++||.+|..+|+|++|+..|++++++     .|+++   ..++|||.++..+|++++|+..|++++++....
T Consensus       337 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~  415 (433)
T 3qww_A          337 VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVA  415 (433)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence            444678999999999999999999999999977     35555   568999999999999999999999999988764

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.25  E-value=2.4e-07  Score=65.49  Aligned_cols=55  Identities=18%  Similarity=0.282  Sum_probs=48.1

Q ss_pred             cCCCcHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695         20 SPGNIPEAIQSYRTALKL---KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus        20 ~~g~~~eA~~~~~~Al~l---~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+|++++|+.+|++++++   +|+++.++.++|.++..+|++++|+..++++++..|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~   59 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN   59 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            479999999999999999   6999999999999999999999999999999998886

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.24  E-value=2.9e-06  Score=75.45  Aligned_cols=72  Identities=17%  Similarity=0.224  Sum_probs=62.9

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+|+++.+++.+|.+|.+.|++++|+..|+++++++|++..++.+++.++...|++++|.+.|++++...|+
T Consensus       368 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  439 (597)
T 2xpi_A          368 RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG  439 (597)
T ss_dssp             HCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT
T ss_pred             hCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            367888899999999999999999999999999999999999999999999999999999988888766553

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.23  E-value=1.5e-06  Score=71.41  Aligned_cols=67  Identities=10%  Similarity=0.024  Sum_probs=61.2

Q ss_pred             HHHHHHHHHhcccC-CCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          8 KVGILFSNSSFPSP-GNIPEAIQSYRTALKLKPDF------PDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         8 ~~~~~~lg~~l~~~-g~~~eA~~~~~~Al~l~P~~------~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +.++.++|.+|... |++++|+.+|++|+++.|++      ..++.++|.++..+|++++|...|++++.+.++
T Consensus       117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  190 (292)
T 1qqe_A          117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG  190 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence            56899999999996 99999999999999998865      578999999999999999999999999987765

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.22  E-value=1.3e-06  Score=69.42  Aligned_cols=71  Identities=21%  Similarity=0.189  Sum_probs=65.3

Q ss_pred             CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKL--------KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l--------~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +|..+.++.++|.++..+|++++|+.+|++++++        +|....++.++|.++...|++++|...+++++.....
T Consensus        81 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  159 (283)
T 3edt_B           81 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT  159 (283)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            4566889999999999999999999999999999        5778899999999999999999999999999988654

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.21  E-value=2.5e-06  Score=70.43  Aligned_cols=67  Identities=12%  Similarity=-0.085  Sum_probs=61.2

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLK--PD-FPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~--P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..+++++|.++..+|++++|+.+|++++...  |. .+++++++|.++..+|+.++|.+.|++++...|+
T Consensus       171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE  240 (282)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence            3589999999999999999999999999765  66 6789999999999999999999999999988775

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.18  E-value=1.3e-06  Score=74.76  Aligned_cols=67  Identities=19%  Similarity=0.272  Sum_probs=63.0

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALK----------------LKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSI   71 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~----------------l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~   71 (222)
                      +..+..+|..+.+.|++++|+.+|++|++                ++|.+..++.|+|.++..+++|++|+..+++++++
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            56799999999999999999999999999                88999999999999999999999999999999987


Q ss_pred             HHh
Q psy17695         72 VAE   74 (222)
Q Consensus        72 ~~~   74 (222)
                      .|+
T Consensus       303 ~p~  305 (370)
T 1ihg_A          303 DPS  305 (370)
T ss_dssp             CTT
T ss_pred             Cch
Confidence            664

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.16  E-value=3.4e-06  Score=70.54  Aligned_cols=75  Identities=4%  Similarity=-0.085  Sum_probs=69.5

Q ss_pred             CCCCCCCHHHHHHHHHhcccCC--CcHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHH
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPG--NIPEAIQSYRTALKLKPDFPDAYCNLAHCL----QIV---CDWTDYEARMKKLVSI   71 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g--~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~----~~~---~~~~~a~~~~~~~~~~   71 (222)
                      |.++|++..+|+..|.++..+|  ++++++.+++++++++|++..+|++.+.++    ...   ++++++.+.+.+++..
T Consensus        60 L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~  139 (306)
T 3dra_A           60 INELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS  139 (306)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH
T ss_pred             HHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh
Confidence            3578999999999999999999  999999999999999999999999999999    666   7899999999999988


Q ss_pred             HHhh
Q psy17695         72 VAEQ   75 (222)
Q Consensus        72 ~~~~   75 (222)
                      .|+.
T Consensus       140 ~pkn  143 (306)
T 3dra_A          140 DPKN  143 (306)
T ss_dssp             CTTC
T ss_pred             CCCC
Confidence            8863

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.15  E-value=4.5e-06  Score=68.94  Aligned_cols=66  Identities=12%  Similarity=0.119  Sum_probs=53.8

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF------PDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~------~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +.++.++|.+|.. |++++|+.+|++|+++.|..      ..++.++|.++..+|++++|...|++++.+.++
T Consensus       116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  187 (307)
T 2ifu_A          116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE  187 (307)
T ss_dssp             HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            4677888888888 88888888888888887654      567888888888888888888888888887775

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.15  E-value=2.7e-06  Score=68.76  Aligned_cols=71  Identities=20%  Similarity=0.239  Sum_probs=65.8

Q ss_pred             CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKL--------KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l--------~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .|....++.++|.++...|++++|+.+|++++++        +|....++.++|.++...|++++|...+++++...++
T Consensus       149 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  227 (311)
T 3nf1_A          149 HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE  227 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            3566789999999999999999999999999999        7888899999999999999999999999999988765

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.14  E-value=1.1e-05  Score=65.98  Aligned_cols=67  Identities=13%  Similarity=0.117  Sum_probs=61.0

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTAL---KLKPDFP----DAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al---~l~P~~~----~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..+++++|.+|..+|++++|+.+|++|+   +..|++.    .+++|+|.++..+|++++|...+++++.+.++
T Consensus       155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~  228 (293)
T 2qfc_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR  228 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            6799999999999999999999999999   5567654    68999999999999999999999999988764

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.14  E-value=5.5e-06  Score=70.73  Aligned_cols=72  Identities=11%  Similarity=0.015  Sum_probs=67.1

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..+|.++.++..++.++...|++++|+..+++|++++|+ +.++..+|.++...|++++|.+.|.+++++.|.
T Consensus       271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~  342 (372)
T 3ly7_A          271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG  342 (372)
T ss_dssp             GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred             ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            457999999999999999899999999999999999985 788999999999999999999999999999875

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.14  E-value=6.8e-06  Score=59.38  Aligned_cols=66  Identities=15%  Similarity=0.216  Sum_probs=50.2

Q ss_pred             HHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          9 VGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF------PDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~------~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .++.++|.++..+|++++|+..|++++++.+..      ..++.++|.++...|++++|...+++++...++
T Consensus        50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  121 (164)
T 3ro3_A           50 IAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE  121 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            467778888888888888888888888775443      557778888888888888888888887777654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.12  E-value=3e-06  Score=64.48  Aligned_cols=70  Identities=11%  Similarity=0.029  Sum_probs=55.1

Q ss_pred             CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHh---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKL---KPD----FPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l---~P~----~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      |..+.++.++|.++..+|++++|+.+|++++++   .++    ...++.++|.++...|++++|...+++++.+.+.
T Consensus        63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  139 (203)
T 3gw4_A           63 TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQ  139 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence            345677888888888888888888888888888   443    3456888888888888888888888888877654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.11  E-value=2.3e-06  Score=76.03  Aligned_cols=72  Identities=8%  Similarity=-0.111  Sum_probs=63.7

Q ss_pred             CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKL-----KPDFP---DAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l-----~P~~~---~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      .|+-+..+++||.+|..+|+|++|+..|++++++     .|+++   ..++|||.++..+|++++|+..|++++++....
T Consensus       347 Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~  426 (490)
T 3n71_A          347 NLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVT  426 (490)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            3445678999999999999999999999999977     46665   568999999999999999999999999988764

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.11  E-value=4.6e-06  Score=63.40  Aligned_cols=69  Identities=9%  Similarity=0.050  Sum_probs=63.6

Q ss_pred             CCHHHHHHHHHhcccCCCcHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALK------LKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~------l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..+.++.++|.++...|++++|+.+|+++++      ..|....++.++|.++...|++++|...+++++.+...
T Consensus        24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   98 (203)
T 3gw4_A           24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLAS   98 (203)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            6788999999999999999999999999999      55667789999999999999999999999999998764

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.11  E-value=6e-06  Score=61.81  Aligned_cols=73  Identities=11%  Similarity=-0.018  Sum_probs=67.4

Q ss_pred             CCCCCHHHHHHHHHhcccCC---CcHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          3 KTPFFKVGILFSNSSFPSPG---NIPEAIQSYRTALKLK-P-DFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g---~~~eA~~~~~~Al~l~-P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      .+|.+.++.+++|.+|...+   +..+++..++..++.+ | ++.+++++||..+.+++++++|..+++++++..|+.
T Consensus        27 ~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n  104 (152)
T 1pc2_A           27 AGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN  104 (152)
T ss_dssp             TTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred             cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence            46788999999999999998   6779999999999999 8 679999999999999999999999999999988863

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.11  E-value=4.9e-06  Score=67.15  Aligned_cols=72  Identities=17%  Similarity=0.142  Sum_probs=66.3

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKL--------KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l--------~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+|+.+.++..+|.++...|++++|+..|++++++        +|....++.++|.++...|++++|...+++++.....
T Consensus        22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  101 (311)
T 3nf1_A           22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK  101 (311)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            46778999999999999999999999999999996        6778899999999999999999999999999988643

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.10  E-value=3e-06  Score=76.62  Aligned_cols=73  Identities=8%  Similarity=0.104  Sum_probs=56.5

Q ss_pred             CCCCCCHHHHHHHHHhcccCCC----------cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHH
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGN----------IPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVC--DWTDYEARMKKLV   69 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~----------~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~--~~~~a~~~~~~~~   69 (222)
                      ..+|++..+|+..|.++..+|+          +++|+++++++++.+|++..+|++.+.++..++  +|+++.+.+.+++
T Consensus        57 ~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l  136 (567)
T 1dce_A           57 GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFL  136 (567)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred             HHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHH
Confidence            3577788888888888877777          778888888888888888888888888877777  6777777777777


Q ss_pred             HHHHh
Q psy17695         70 SIVAE   74 (222)
Q Consensus        70 ~~~~~   74 (222)
                      +..|+
T Consensus       137 ~~d~~  141 (567)
T 1dce_A          137 EADER  141 (567)
T ss_dssp             HHCTT
T ss_pred             hhccc
Confidence            76654

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.10  E-value=2.3e-06  Score=70.64  Aligned_cols=73  Identities=14%  Similarity=0.179  Sum_probs=65.5

Q ss_pred             CCCCC--CHHHHHHHHHhcccC-----CCcHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Q psy17695          2 MKTPF--FKVGILFSNSSFPSP-----GNIPEAIQSYRTALKLKPDF-PDAYCNLAHCLQI-VCDWTDYEARMKKLVSIV   72 (222)
Q Consensus         2 ~~~P~--~~~~~~~lg~~l~~~-----g~~~eA~~~~~~Al~l~P~~-~~a~~~l~~~~~~-~~~~~~a~~~~~~~~~~~   72 (222)
                      .++|+  +..+|..||.+|...     |+.++|.++|++|++++|+. ...++.+|..+.. .++.+++.+.++++++..
T Consensus       191 eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~  270 (301)
T 3u64_A          191 DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAID  270 (301)
T ss_dssp             HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCC
T ss_pred             HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Confidence            46888  677999999999995     99999999999999999975 9999999999988 599999999999998766


Q ss_pred             Hh
Q psy17695         73 AE   74 (222)
Q Consensus        73 ~~   74 (222)
                      |.
T Consensus       271 p~  272 (301)
T 3u64_A          271 PE  272 (301)
T ss_dssp             GG
T ss_pred             CC
Confidence            54

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.08  E-value=9.1e-06  Score=68.69  Aligned_cols=67  Identities=13%  Similarity=0.111  Sum_probs=62.4

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHH-----hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALK-----LK-PDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~-----l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +.++.++|.++..+|++++|+.+|++|++     .+ |..+.++.++|.++...|++++|...+++++.+.++
T Consensus       224 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  296 (383)
T 3ulq_A          224 GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK  296 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999     46 888999999999999999999999999999988765

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.08  E-value=7.6e-06  Score=66.90  Aligned_cols=69  Identities=13%  Similarity=0.074  Sum_probs=62.3

Q ss_pred             CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHh
Q psy17695          6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF------PDAYCNLAHCLQIVCD-WTDYEARMKKLVSIVAE   74 (222)
Q Consensus         6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~------~~a~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~   74 (222)
                      ..+.+++++|.+|..+|++++|+.+|++|+++.+..      +.+++++|.++..+|+ +++|...+++++.+...
T Consensus       194 ~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~  269 (293)
T 3u3w_A          194 FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDI  269 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            345689999999999999999999999999997555      8899999999999995 79999999999988875

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.05  E-value=2e-05  Score=63.26  Aligned_cols=65  Identities=12%  Similarity=0.047  Sum_probs=51.7

Q ss_pred             CCCHHHHHHHHHhccc----CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q psy17695          5 PFFKVGILFSNSSFPS----PGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQI----VCDWTDYEARMKKLVSI   71 (222)
Q Consensus         5 P~~~~~~~~lg~~l~~----~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~----~~~~~~a~~~~~~~~~~   71 (222)
                      |+++.+++++|.++..    .|++++|+.+|+++++++  ++.+++++|.++..    .+++++|...+++++..
T Consensus        35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~  107 (273)
T 1ouv_A           35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL  107 (273)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc
Confidence            6677888888888888    888888888888888775  77888888888888    88888888888777653

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.05  E-value=7.6e-06  Score=59.09  Aligned_cols=68  Identities=16%  Similarity=0.174  Sum_probs=61.2

Q ss_pred             CHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFP------DAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~------~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+.++..+|.++...|++++|+.+|++++++.+...      .++.++|.++...|++++|...+++++...++
T Consensus         8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   81 (164)
T 3ro3_A            8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ   81 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            357899999999999999999999999999966432      48999999999999999999999999998876

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.04  E-value=6.2e-06  Score=67.43  Aligned_cols=67  Identities=13%  Similarity=0.085  Sum_probs=59.6

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKL-------KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l-------~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..+++++|.+|..+|++++|+.+|++|+++       .+....+++|+|.++..+|++++|...+++++.+.++
T Consensus       155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~  228 (293)
T 3u3w_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR  228 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            457999999999999999999999999953       2334568999999999999999999999999998876

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.02  E-value=8e-06  Score=70.50  Aligned_cols=73  Identities=12%  Similarity=0.010  Sum_probs=62.1

Q ss_pred             CCCCCCHHHHHHHHHhcc----cCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFP----SPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~----~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .++|+++.++.++|..+.    ..|++++|+.+|+++++++|+++.++.++|.++...|++++|...++++++..|+
T Consensus       203 ~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  279 (472)
T 4g1t_A          203 RLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN  279 (472)
T ss_dssp             HHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             hcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC
Confidence            357999999999886654    5578899999999999999999999999999999999999999999999988776

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.00  E-value=1.2e-05  Score=62.90  Aligned_cols=68  Identities=16%  Similarity=0.016  Sum_probs=49.0

Q ss_pred             CCCCHHHHHHHHHhccc----CCCcHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q psy17695          4 TPFFKVGILFSNSSFPS----PGNIPEAIQSYRTALKLKP--DFPDAYCNLAHCLQI----VCDWTDYEARMKKLVSI   71 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l~~----~g~~~eA~~~~~~Al~l~P--~~~~a~~~l~~~~~~----~~~~~~a~~~~~~~~~~   71 (222)
                      +++++.++++||.+|..    .+++++|+.+|++|++..|  +++.++++||.++..    .+++++|...|+++...
T Consensus        81 ~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~  158 (212)
T 3rjv_A           81 EAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL  158 (212)
T ss_dssp             HTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred             HCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence            35667777777777776    7777777777777777776  347777777777777    66777777777777654

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.99  E-value=4.4e-06  Score=73.03  Aligned_cols=71  Identities=7%  Similarity=-0.036  Sum_probs=62.7

Q ss_pred             CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKL-----KPDFP---DAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l-----~P~~~---~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      |.-+..+.+||.+|..+|+|++|+..+++++++     .|+++   ..++|||.++..+|++++|+..+++++++....
T Consensus       326 ~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~  404 (429)
T 3qwp_A          326 IYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVT  404 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence            344678999999999999999999999999977     36665   468999999999999999999999999988764

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.97  E-value=4.4e-05  Score=55.69  Aligned_cols=63  Identities=17%  Similarity=0.070  Sum_probs=43.0

Q ss_pred             CCHHHHHHHHHhccc----CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q psy17695          6 FFKVGILFSNSSFPS----PGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQI----VCDWTDYEARMKKLVS   70 (222)
Q Consensus         6 ~~~~~~~~lg~~l~~----~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~----~~~~~~a~~~~~~~~~   70 (222)
                      +++.++++||.+|..    .+++++|+.+|++|.+.  +++.+.++||.++..    ..++++|...|+++.+
T Consensus        55 g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~  125 (138)
T 1klx_A           55 NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR  125 (138)
T ss_dssp             TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence            456677777777766    66777777777777665  566777777777766    6667777766666654

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=97.96  E-value=6.9e-06  Score=72.77  Aligned_cols=71  Identities=14%  Similarity=0.090  Sum_probs=55.5

Q ss_pred             CCCCCHHHHHHHHHhccc-------CCCcH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17695          3 KTPFFKVGILFSNSSFPS-------PGNIP-------EAIQSYRTALK-LKPDFPDAYCNLAHCLQIVCDWTDYEARMKK   67 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~-------~g~~~-------eA~~~~~~Al~-l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~   67 (222)
                      .+|.++.+|+.+|..+..       .|+++       +|+..|++|++ +.|++..+|.+++.++...|++++|...|++
T Consensus       267 ~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~  346 (530)
T 2ooe_A          267 VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNR  346 (530)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            357788888888888775       78876       78888888886 7888888888888888888888888888887


Q ss_pred             HHHHHH
Q psy17695         68 LVSIVA   73 (222)
Q Consensus        68 ~~~~~~   73 (222)
                      ++...|
T Consensus       347 al~~~p  352 (530)
T 2ooe_A          347 LLAIED  352 (530)
T ss_dssp             HHHSSS
T ss_pred             HhCccc
Confidence            776543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=97.95  E-value=1.9e-05  Score=66.71  Aligned_cols=68  Identities=9%  Similarity=0.171  Sum_probs=62.3

Q ss_pred             CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695          6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFP----DAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~----~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      .....+..+|..+...|++++|+..|+++++++|+++    .++.++|.++...|++++|...+++++.+..
T Consensus        46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  117 (411)
T 4a1s_A           46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAK  117 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            4467788999999999999999999999999999997    5899999999999999999999999998753

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=97.95  E-value=1.2e-05  Score=65.70  Aligned_cols=66  Identities=12%  Similarity=0.044  Sum_probs=59.9

Q ss_pred             HHHHHHHHhcccCCCcHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHh
Q psy17695          9 VGILFSNSSFPSPGNIPEAIQSYRTALKLKPD------FPDAYCNLAHCLQIVCDWTDY-EARMKKLVSIVAE   74 (222)
Q Consensus         9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~------~~~a~~~l~~~~~~~~~~~~a-~~~~~~~~~~~~~   74 (222)
                      .+++++|.+|..+|++++|+.+|++++++.++      ...+++++|.++..+|++++| ...+++++.+...
T Consensus       197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~  269 (293)
T 2qfc_A          197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDI  269 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999998644      278999999999999999999 8889999987764

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=97.95  E-value=1.3e-05  Score=67.04  Aligned_cols=73  Identities=4%  Similarity=-0.112  Sum_probs=67.9

Q ss_pred             CCCCCCHHHHHHHHHhc----ccC---CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHH
Q psy17695          2 MKTPFFKVGILFSNSSF----PSP---GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWT--DYEARMKKLVSIV   72 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l----~~~---g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~--~a~~~~~~~~~~~   72 (222)
                      ..+|.+..+|+..+.++    ..+   +++++++.+++++++.+|++..+|++.+.++..++.|+  ++.+.+.+++...
T Consensus        97 ~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d  176 (306)
T 3dra_A           97 LDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD  176 (306)
T ss_dssp             HHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred             HHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC
Confidence            46899999999999999    777   89999999999999999999999999999999999998  9999999998877


Q ss_pred             Hh
Q psy17695         73 AE   74 (222)
Q Consensus        73 ~~   74 (222)
                      +.
T Consensus       177 ~~  178 (306)
T 3dra_A          177 LK  178 (306)
T ss_dssp             TT
T ss_pred             CC
Confidence            75

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.95  E-value=1.3e-05  Score=55.94  Aligned_cols=50  Identities=6%  Similarity=-0.035  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695         25 PEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus        25 ~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ++|+..|+++++++|+++.+++++|.++...|++++|+..+++++...|+
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   51 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT   51 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence            47899999999999999999999999999999999999999999988775

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=97.94  E-value=1.1e-05  Score=68.30  Aligned_cols=67  Identities=13%  Similarity=0.170  Sum_probs=60.5

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALK-----LKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~-----l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +.++.++|.++..+|++++|+.+|+++++     .+|..+.++.++|.++...|++++|...+++++.+.++
T Consensus       222 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          222 AISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            56888999999999999999999999999     78888999999999999999999999999999887654

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=97.94  E-value=4.9e-05  Score=63.57  Aligned_cols=70  Identities=7%  Similarity=0.135  Sum_probs=62.7

Q ss_pred             CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFP----DAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~----~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .....++..+|.++...|++++|+.+|+++++++|+++    .++.++|.++...|++++|...+++++.+.+.
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   79 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART   79 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence            45678899999999999999999999999999999984    67899999999999999999999999887543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.93  E-value=7.5e-06  Score=74.01  Aligned_cols=73  Identities=7%  Similarity=-0.153  Sum_probs=67.3

Q ss_pred             CCCCCCHHHHHHHHHhcccCC--CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPG--NIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVC-DWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g--~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~   74 (222)
                      ..+|.+..+|++.+.++..+|  ++++|+++++++++++|.+..+|.+.+.++...+ .++++.+++.++++..|.
T Consensus       101 ~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~  176 (567)
T 1dce_A          101 RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS  176 (567)
T ss_dssp             HHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC
T ss_pred             HhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC
Confidence            468999999999999999999  6699999999999999999999999999999999 899999888888876664

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=97.92  E-value=9.9e-06  Score=71.76  Aligned_cols=72  Identities=10%  Similarity=0.030  Sum_probs=66.6

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..+|.+..+|..++.. .+.|++++|...|+++++..|++...|..++..+...|++++|...|++++...|+
T Consensus         7 ~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~   78 (530)
T 2ooe_A            7 EENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH   78 (530)
T ss_dssp             HHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC
T ss_pred             hhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Confidence            4689999999999985 78999999999999999999999999999999999999999999999999877663

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=97.91  E-value=2.2e-05  Score=66.23  Aligned_cols=73  Identities=5%  Similarity=-0.178  Sum_probs=67.9

Q ss_pred             CCCCCCHHHHHHHHHhcccCCC--cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGN--IPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCD-WTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~--~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~   74 (222)
                      ..+|.+..+|++.+.++..+|+  +++++++++++++++|.+..+|++.+.++...+. ++++.+++.+++...|.
T Consensus       102 ~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~  177 (331)
T 3dss_A          102 RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS  177 (331)
T ss_dssp             HHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC
T ss_pred             HhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC
Confidence            4689999999999999999995  8999999999999999999999999999999998 68999999999987775

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=97.91  E-value=1.6e-05  Score=67.19  Aligned_cols=72  Identities=11%  Similarity=0.089  Sum_probs=65.8

Q ss_pred             CCCCCH----HHHHHHHHhcccCCCcHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy17695          3 KTPFFK----VGILFSNSSFPSPGNIPEAIQSYRTALKL------KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIV   72 (222)
Q Consensus         3 ~~P~~~----~~~~~lg~~l~~~g~~~eA~~~~~~Al~l------~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~   72 (222)
                      .+|+++    .++..+|.++..+|++++|+.+|++++++      +|....++.++|.++...|++++|...+++++.+.
T Consensus        77 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  156 (411)
T 4a1s_A           77 AGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLA  156 (411)
T ss_dssp             HCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            356766    68999999999999999999999999999      68888999999999999999999999999999886


Q ss_pred             Hh
Q psy17695         73 AE   74 (222)
Q Consensus        73 ~~   74 (222)
                      +.
T Consensus       157 ~~  158 (411)
T 4a1s_A          157 RQ  158 (411)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=97.90  E-value=2.4e-05  Score=63.21  Aligned_cols=66  Identities=14%  Similarity=0.120  Sum_probs=39.8

Q ss_pred             HHHHHHHHhcccCCCcHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          9 VGILFSNSSFPSPGNIPEAIQSYRTALKL------KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~l------~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .++..+|.++...|++++|+..|++++++      .|....++.++|.++...|++++|...+++++.+.++
T Consensus        44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  115 (338)
T 3ro2_A           44 AIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE  115 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            45556666666666666666666666655      3444555666666666666666666666666655543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=97.90  E-value=1.8e-05  Score=66.83  Aligned_cols=68  Identities=10%  Similarity=0.008  Sum_probs=46.5

Q ss_pred             CHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPD-------FPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~-------~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+.+++++|.++..+|++++|+.+|++|+++.+.       ...++.++|.++..+|++++|...+++++.+.++
T Consensus       142 ~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  216 (383)
T 3ulq_A          142 KAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEA  216 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            4566777777777777777777777777776332       2346777777777777777777777777766554

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=97.87  E-value=1.4e-05  Score=65.95  Aligned_cols=66  Identities=8%  Similarity=-0.029  Sum_probs=59.4

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF------PDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~------~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..++.++|.++..+|++++|+.+|++++++.|++      ..++.++|.++..+|++++|...+++++ +.|.
T Consensus       155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~  226 (307)
T 2ifu_A          155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPG  226 (307)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCC
Confidence            5789999999999999999999999999997654      3578899999999999999999999998 7664

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=97.87  E-value=2.4e-05  Score=66.07  Aligned_cols=75  Identities=8%  Similarity=0.117  Sum_probs=69.3

Q ss_pred             CCCCCCCHHHHHHHHHhcccCCC----------cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHH
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPGN----------IPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVC--DWTDYEARMKKL   68 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g~----------~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~--~~~~a~~~~~~~   68 (222)
                      |..+|++..+|+..+.++..+|+          +++++.+++.+++.+|++..+|++.+.++..++  +|+++.+.+.++
T Consensus        57 L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~  136 (331)
T 3dss_A           57 LGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARF  136 (331)
T ss_dssp             HTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred             HHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHH
Confidence            46899999999999999998887          789999999999999999999999999999999  499999999999


Q ss_pred             HHHHHhh
Q psy17695         69 VSIVAEQ   75 (222)
Q Consensus        69 ~~~~~~~   75 (222)
                      +...|+.
T Consensus       137 l~~dprN  143 (331)
T 3dss_A          137 LEADERN  143 (331)
T ss_dssp             HHHCTTC
T ss_pred             HHhCCCC
Confidence            9888763

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=97.86  E-value=1.4e-05  Score=67.99  Aligned_cols=73  Identities=7%  Similarity=-0.080  Sum_probs=64.2

Q ss_pred             CCCCCCHHHHHHHHHhcccCC-CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPG-NIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIV-C-DWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g-~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~-~-~~~~a~~~~~~~~~~~~~   74 (222)
                      .++|++..+|+..+.++..+| ++++++.+++++++.+|++..+|++.+.++... + +++++.+.+.+++...|+
T Consensus        82 ~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk  157 (349)
T 3q7a_A           82 RMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK  157 (349)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT
T ss_pred             HhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC
Confidence            468999999999999999999 599999999999999999999999999999888 7 888888888887766554

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=97.86  E-value=7.7e-05  Score=60.19  Aligned_cols=67  Identities=7%  Similarity=0.169  Sum_probs=61.1

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFP----DAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~----~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ...++..|..+...|++++|+.+|+++++++|+++    .++.++|.++...|++++|...+++++.+...
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   75 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART   75 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Confidence            45788899999999999999999999999999994    67889999999999999999999999887543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=97.86  E-value=3e-05  Score=64.92  Aligned_cols=71  Identities=13%  Similarity=0.068  Sum_probs=64.6

Q ss_pred             CCCC----HHHHHHHHHhcccCCCcHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695          4 TPFF----KVGILFSNSSFPSPGNIPEAIQSYRTALKL------KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         4 ~P~~----~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l------~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      +|++    +.++..+|.++...|++++|+.+|++++++      .|....++.++|.++...|++++|...+++++.+.+
T Consensus        39 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  118 (406)
T 3sf4_A           39 GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISR  118 (406)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            5666    468999999999999999999999999998      466688999999999999999999999999999887


Q ss_pred             h
Q psy17695         74 E   74 (222)
Q Consensus        74 ~   74 (222)
                      +
T Consensus       119 ~  119 (406)
T 3sf4_A          119 E  119 (406)
T ss_dssp             H
T ss_pred             h
Confidence            6

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=97.82  E-value=3.3e-05  Score=60.28  Aligned_cols=63  Identities=17%  Similarity=0.053  Sum_probs=52.7

Q ss_pred             CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHH
Q psy17695          5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVC----DWTDYEARMKKLVS   70 (222)
Q Consensus         5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~----~~~~a~~~~~~~~~   70 (222)
                      .+++.++++||.++...+++++|+.+|++|++.  +++.++++||.++.. +    ++++|...|+++..
T Consensus        15 ~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~   81 (212)
T 3rjv_A           15 AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE   81 (212)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH
Confidence            467888999999998889999999999998765  678888999988887 6    78888888888753

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=97.77  E-value=4.1e-05  Score=65.02  Aligned_cols=74  Identities=7%  Similarity=-0.036  Sum_probs=68.0

Q ss_pred             CCCCCCCHHHHHHHHHhcccCCCcH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------HHHHHHHH
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPGNIP--------EAIQSYRTALKLKPDFPDAYCNLAHCLQIVCD-------WTDYEARM   65 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g~~~--------eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~-------~~~a~~~~   65 (222)
                      |..+|.|..+|+..+.++..+|+++        +++++++++++.+|.+..+|++++.++...+.       ++++.+++
T Consensus       152 L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~  231 (349)
T 3q7a_A          152 LLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYI  231 (349)
T ss_dssp             TSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence            4689999999999999999999998        99999999999999999999999999999886       67888888


Q ss_pred             HHHHHHHHh
Q psy17695         66 KKLVSIVAE   74 (222)
Q Consensus        66 ~~~~~~~~~   74 (222)
                      .+++...|+
T Consensus       232 ~~aI~~~P~  240 (349)
T 3q7a_A          232 LKSIHLIPH  240 (349)
T ss_dssp             HHHHHHCTT
T ss_pred             HHHHHhCCC
Confidence            888887775

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.72  E-value=7e-05  Score=51.91  Aligned_cols=47  Identities=17%  Similarity=0.134  Sum_probs=43.5

Q ss_pred             CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17695          5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHC   51 (222)
Q Consensus         5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~   51 (222)
                      +..+..+.+||.++.++|++++|+..++++++++|++..++.|+...
T Consensus        43 ~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~~~   89 (104)
T 2v5f_A           43 IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYF   89 (104)
T ss_dssp             SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHHHH
Confidence            45688999999999999999999999999999999999999999744

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.71  E-value=1.7e-05  Score=54.33  Aligned_cols=39  Identities=10%  Similarity=0.201  Sum_probs=36.2

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCC
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPD   40 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~   40 (222)
                      ..+|+++.+|+++|.++..+|++++|+.+|++++++.|+
T Consensus        35 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A           35 ETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             HHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            458999999999999999999999999999999999764

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=97.64  E-value=8.2e-05  Score=62.78  Aligned_cols=69  Identities=4%  Similarity=-0.063  Sum_probs=54.2

Q ss_pred             CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPD-------FPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~-------~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..+.+++++|.++..+|++++|+.+|++|+++.+.       .+.++.++|.++...|++++|...+++++.+.++
T Consensus       139 ~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~  214 (378)
T 3q15_A          139 EKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMD  214 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            35678888888888888888888888888887442       2456788888888888888888888888877654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=97.61  E-value=0.00015  Score=60.59  Aligned_cols=69  Identities=13%  Similarity=0.193  Sum_probs=61.4

Q ss_pred             CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695          5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPD-----FPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~-----~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      |....++.++|.++...|++++|+.++++++++.|.     ...++.+++.++...|++++|...+++++.+.+
T Consensus       132 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~  205 (373)
T 1hz4_A          132 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLG  205 (373)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            445678899999999999999999999999999876     356889999999999999999999999987754

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=97.59  E-value=0.00011  Score=61.46  Aligned_cols=66  Identities=14%  Similarity=0.097  Sum_probs=59.1

Q ss_pred             HHHHHHHHhcccCCCcHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          9 VGILFSNSSFPSPGNIPEAIQSYRTALKLK--------PDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~--------P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .++.++|.++..+|++++|+..|++++++.        |....++.++|.++...|++++|...+++++...++
T Consensus        94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  167 (373)
T 1hz4_A           94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS  167 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence            457899999999999999999999999985        445678899999999999999999999999987764

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.49  E-value=8.9e-05  Score=61.12  Aligned_cols=66  Identities=11%  Similarity=0.029  Sum_probs=56.5

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCC-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPD-F-PDAYCNLAHCLQIVCDWTDYEARMKKLV   69 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~-~-~~a~~~l~~~~~~~~~~~~a~~~~~~~~   69 (222)
                      .+|++. +++.+|.++.+.|+|++|+.+|+++++..+. . ..+++++|.++..+|++++|+.+|+++.
T Consensus       131 ~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~  198 (282)
T 4f3v_A          131 AGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEAN  198 (282)
T ss_dssp             TTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            467777 9999999999999999999999988776322 2 4589999999999999999999999876

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.47  E-value=5.7e-05  Score=51.63  Aligned_cols=41  Identities=12%  Similarity=0.077  Sum_probs=38.6

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCH
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFP   42 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~   42 (222)
                      ..+|+++.+++.+|..+.+.|++++|+.+|+++++.+|.++
T Consensus        37 ~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~   77 (93)
T 3bee_A           37 QLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL   77 (93)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred             HHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            56899999999999999999999999999999999999843

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.35  E-value=0.00016  Score=64.22  Aligned_cols=63  Identities=11%  Similarity=0.040  Sum_probs=54.1

Q ss_pred             HHHHhcccCCCcHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695         13 FSNSSFPSPGNIPEAIQSYRTALKL-----KPDFP---DAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus        13 ~lg~~l~~~g~~~eA~~~~~~Al~l-----~P~~~---~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      ..+..+..+|++++|+..|++++++     .|+++   .++.|||.+|..+|+|++|+..+++++.+....
T Consensus       314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~  384 (490)
T 3n71_A          314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKL  384 (490)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            3445678999999999999999987     35554   578999999999999999999999999887764

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=97.29  E-value=0.001  Score=58.07  Aligned_cols=65  Identities=12%  Similarity=-0.030  Sum_probs=56.1

Q ss_pred             CCHHHHHHHHHhccc----CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHH
Q psy17695          6 FFKVGILFSNSSFPS----PGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQI----VCDWTDYEARMKKLVSIV   72 (222)
Q Consensus         6 ~~~~~~~~lg~~l~~----~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~----~~~~~~a~~~~~~~~~~~   72 (222)
                      +++.++++||.+|..    .+++++|+.+|++|++.  +++.++++||.++..    .+++++|...|++++...
T Consensus       361 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~  433 (490)
T 2xm6_A          361 GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND  433 (490)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence            578888999999888    88999999999998875  468889999999888    788999999999888877

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.28  E-value=0.0011  Score=48.06  Aligned_cols=61  Identities=15%  Similarity=-0.011  Sum_probs=54.9

Q ss_pred             CHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q psy17695          7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQI----VCDWTDYEARMKKLVSI   71 (222)
Q Consensus         7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~----~~~~~~a~~~~~~~~~~   71 (222)
                      ++.+.  ||.+|...+..++|+.+|++|.+.  +++.+.++||.++..    ..++++|...|+++.+.
T Consensus        26 ~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~   90 (138)
T 1klx_A           26 EMFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL   90 (138)
T ss_dssp             CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred             CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC
Confidence            44555  999999999999999999999997  789999999999998    89999999999998753

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.26  E-value=0.00053  Score=67.46  Aligned_cols=65  Identities=17%  Similarity=0.154  Sum_probs=59.5

Q ss_pred             CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695          4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      ..+.+.+|+++|.++.+.|+++||+++|.+|     +++.++.+.+.++...|+|+++.+.+..+++..+
T Consensus      1101 rvn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~ 1165 (1630)
T 1xi4_A         1101 RCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR 1165 (1630)
T ss_pred             hcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Confidence            3577999999999999999999999999886     8999999999999999999999999988776553

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.24  E-value=0.00034  Score=52.27  Aligned_cols=47  Identities=11%  Similarity=-0.055  Sum_probs=41.8

Q ss_pred             C-CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17695          5 P-FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHC   51 (222)
Q Consensus         5 P-~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~   51 (222)
                      | +..+++++||..+.++|+|++|..+++++|+++|++.++....-.+
T Consensus        67 p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~i  114 (152)
T 1pc2_A           67 KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI  114 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            5 5689999999999999999999999999999999999987665433

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.21  E-value=0.001  Score=54.96  Aligned_cols=72  Identities=11%  Similarity=0.097  Sum_probs=61.1

Q ss_pred             CCCCCHHHHHHHHHhccc-----CCC------cHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-----CCHHHHHHH
Q psy17695          3 KTPFFKVGILFSNSSFPS-----PGN------IPEAIQSYRTALKLKPD--FPDAYCNLAHCLQIV-----CDWTDYEAR   64 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~-----~g~------~~eA~~~~~~Al~l~P~--~~~a~~~l~~~~~~~-----~~~~~a~~~   64 (222)
                      .+|+++++++..|.+...     .|.      ..+|...+++|++++|+  +..+|..+|.+|...     |+.++|+++
T Consensus       147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~  226 (301)
T 3u64_A          147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA  226 (301)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred             cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence            467888888887776632     233      57899999999999999  667999999999995     999999999


Q ss_pred             HHHHHHHHHh
Q psy17695         65 MKKLVSIVAE   74 (222)
Q Consensus        65 ~~~~~~~~~~   74 (222)
                      |++++++.|+
T Consensus       227 ferAL~LnP~  236 (301)
T 3u64_A          227 FEHLTRYCSA  236 (301)
T ss_dssp             HHHHHHHCCT
T ss_pred             HHHHHHhCCC
Confidence            9999999996

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.15  E-value=0.0012  Score=55.12  Aligned_cols=69  Identities=1%  Similarity=0.004  Sum_probs=63.9

Q ss_pred             CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695          5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKP--DFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P--~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      +....++..+|.++...|++++|+..+.+++..+|  ++.+++..++.++..+|+.+.|.+.++++.+..|
T Consensus        97 ~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~  167 (310)
T 3mv2_B           97 QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIE  167 (310)
T ss_dssp             CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence            56677788999999999999999999999999997  8999999999999999999999999998887776

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.14  E-value=0.00039  Score=60.71  Aligned_cols=61  Identities=7%  Similarity=-0.015  Sum_probs=52.3

Q ss_pred             HHhcccCCCcHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695         15 NSSFPSPGNIPEAIQSYRTALKL-----KPDFP---DAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus        15 g~~l~~~g~~~eA~~~~~~Al~l-----~P~~~---~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      +......|++++|+..|++++++     .|+++   .++.|||.+|..+|+|++|+..+++++.+....
T Consensus       305 ~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~  373 (433)
T 3qww_A          305 FRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKH  373 (433)
T ss_dssp             HHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence            33445689999999999999986     46665   568999999999999999999999999988764

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.11  E-value=0.00081  Score=58.60  Aligned_cols=63  Identities=10%  Similarity=0.042  Sum_probs=43.0

Q ss_pred             CHHHHHHHHHhcccCC---CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHH
Q psy17695          7 FKVGILFSNSSFPSPG---NIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIV----CDWTDYEARMKKLV   69 (222)
Q Consensus         7 ~~~~~~~lg~~l~~~g---~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~----~~~~~a~~~~~~~~   69 (222)
                      ++.++++||.+|...|   ++++|+.+|+++.+.+|..+..++++|.++...    +++++|...|+++.
T Consensus       175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa  244 (452)
T 3e4b_A          175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA  244 (452)
T ss_dssp             CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred             CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence            3446777777777777   777777777777777777777777777766544    56666666666654

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=97.10  E-value=0.002  Score=56.19  Aligned_cols=62  Identities=15%  Similarity=0.039  Sum_probs=31.7

Q ss_pred             CCHHHHHHHHHhccc----CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q psy17695          6 FFKVGILFSNSSFPS----PGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQI----VCDWTDYEARMKKLV   69 (222)
Q Consensus         6 ~~~~~~~~lg~~l~~----~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~----~~~~~~a~~~~~~~~   69 (222)
                      +++.+++.||.+|..    .+++++|+.+|+++++.  +++.++++||.++..    .+++++|...|+++.
T Consensus        37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~  106 (490)
T 2xm6_A           37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAA  106 (490)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence            445555555555554    45555555555555543  345555555555554    455555555554443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.01  E-value=0.0016  Score=55.20  Aligned_cols=70  Identities=7%  Similarity=-0.010  Sum_probs=62.1

Q ss_pred             CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKL------KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l------~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +..+..+.+||.++...|++++|+..+++++..      +|....++.+++.++..+++|++|...+++++...+.
T Consensus       132 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~  207 (434)
T 4b4t_Q          132 FLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS  207 (434)
T ss_dssp             SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc
Confidence            445678899999999999999999999999987      4556789999999999999999999999999987764

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=96.99  E-value=0.0017  Score=56.58  Aligned_cols=63  Identities=10%  Similarity=0.046  Sum_probs=37.2

Q ss_pred             CCCCHHHHHHHHHhcccC----CCcHHHHHHHHHHHHhCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHH
Q psy17695          4 TPFFKVGILFSNSSFPSP----GNIPEAIQSYRTALKLKPDFPDAYCNLAHC-L--QIVCDWTDYEARMKKLV   69 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l~~~----g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~-~--~~~~~~~~a~~~~~~~~   69 (222)
                      .|..+..+++||.+|...    +++++|+.+|+++.   |+++.++++||.+ +  ...+++++|...|+++.
T Consensus       209 g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa  278 (452)
T 3e4b_A          209 GTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGR  278 (452)
T ss_dssp             TCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence            344555556666666544    56666666666665   6666666666665 3  34556666666665554

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.80  E-value=0.00088  Score=58.36  Aligned_cols=60  Identities=0%  Similarity=-0.234  Sum_probs=52.0

Q ss_pred             HhcccCCCcHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695         16 SSFPSPGNIPEAIQSYRTALKL-----KPDFP---DAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus        16 ~~l~~~g~~~eA~~~~~~Al~l-----~P~~~---~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      .-+..+|++++|+..|++++++     .|+++   .++.|++.++..+|+|++|+..+++++.+....
T Consensus       295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~  362 (429)
T 3qwp_A          295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIF  362 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHH
Confidence            4456789999999999999976     46665   578999999999999999999999999988764

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.61  E-value=0.0028  Score=53.69  Aligned_cols=67  Identities=10%  Similarity=0.017  Sum_probs=57.7

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFP-----------------DAYCNLAHCLQIVCDWTDYEARMKKLVS   70 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~-----------------~a~~~l~~~~~~~~~~~~a~~~~~~~~~   70 (222)
                      |.+...-|..+.+.|++++|++.|.++++..|+..                 .++.++|.++...|+|++|.+.+.+++.
T Consensus         4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~   83 (434)
T 4b4t_Q            4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE   83 (434)
T ss_dssp             TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34566778889999999999999999999998764                 3689999999999999999999998887


Q ss_pred             HHHh
Q psy17695         71 IVAE   74 (222)
Q Consensus        71 ~~~~   74 (222)
                      ..+.
T Consensus        84 ~~~~   87 (434)
T 4b4t_Q           84 YMMQ   87 (434)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            6543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.49  E-value=0.0074  Score=43.46  Aligned_cols=71  Identities=10%  Similarity=-0.061  Sum_probs=62.9

Q ss_pred             CCCCHHHHHHHHHhcccCCCcHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          4 TPFFKVGILFSNSSFPSPGNIPE---AIQSYRTALKLK-P-DFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l~~~g~~~e---A~~~~~~Al~l~-P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ++....+-+++|.+|....+..+   ++..++..++-+ | ..-+.++.|+..+.++|+++.|..+++.+++..|+
T Consensus        31 ~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~  106 (126)
T 1nzn_A           31 GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ  106 (126)
T ss_dssp             SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Confidence            45778999999999999888777   999999999987 6 57789999999999999999999999999988885

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=96.29  E-value=0.0026  Score=53.04  Aligned_cols=56  Identities=21%  Similarity=0.027  Sum_probs=34.1

Q ss_pred             hcccCCCcHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695         17 SFPSPGNIPEAIQSYRTALKL----------KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus        17 ~l~~~g~~~eA~~~~~~Al~l----------~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ++..+|++++|...+++++++          +|++++++.|+..+...+|+  ++.+.++++....|+
T Consensus       220 ~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~  285 (310)
T 3mv2_B          220 LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE  285 (310)
T ss_dssp             HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred             HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence            566666666666666665555          36666666666666666665  555555555554443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.28  E-value=0.01  Score=42.74  Aligned_cols=47  Identities=11%  Similarity=-0.079  Sum_probs=41.7

Q ss_pred             CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy17695          6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCL   52 (222)
Q Consensus         6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~   52 (222)
                      ..-+.++.||..+.++|+|++|..+++..|+++|++.++....-.+.
T Consensus        72 ~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~  118 (126)
T 1nzn_A           72 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID  118 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            45688999999999999999999999999999999999977665543

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=96.21  E-value=0.0029  Score=55.25  Aligned_cols=52  Identities=13%  Similarity=0.063  Sum_probs=25.9

Q ss_pred             HHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17695          9 VGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKL   68 (222)
Q Consensus         9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~   68 (222)
                      .+|.++|..+...|+|++|+.+|.++        ..+..++.++..+|++++|.++++++
T Consensus       123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA  174 (449)
T 1b89_A          123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA  174 (449)
T ss_dssp             --------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc
Confidence            46777777777777777777777755        35666677777777777777666666

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.19  E-value=0.0088  Score=55.07  Aligned_cols=71  Identities=7%  Similarity=-0.009  Sum_probs=66.5

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAI-QSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~-~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      ..|.++..|+..+..+...|+.++|. ..|++|+...|.+...|..++......|+++.|...|++++...+
T Consensus       338 ~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~  409 (679)
T 4e6h_A          338 HVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIH  409 (679)
T ss_dssp             HTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            46889999999999999999999997 999999999999999999999999999999999999999998764

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.13  E-value=0.017  Score=43.49  Aligned_cols=58  Identities=19%  Similarity=0.213  Sum_probs=48.6

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHhC---CC----------------------CHHHHHHHHHHHHHcCCHHHHH
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLK---PD----------------------FPDAYCNLAHCLQIVCDWTDYE   62 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~---P~----------------------~~~a~~~l~~~~~~~~~~~~a~   62 (222)
                      .++...+|.++...|+|..|+..|++||++.   |.                      +.+..+.++.|+.+++++++|+
T Consensus        63 ~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai  142 (167)
T 3ffl_A           63 YQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAI  142 (167)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHH
Confidence            4578899999999999999999999997652   11                      1378899999999999999998


Q ss_pred             HHH
Q psy17695         63 ARM   65 (222)
Q Consensus        63 ~~~   65 (222)
                      ..+
T Consensus       143 ~~L  145 (167)
T 3ffl_A          143 AIL  145 (167)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.07  E-value=0.028  Score=48.10  Aligned_cols=68  Identities=10%  Similarity=0.064  Sum_probs=61.8

Q ss_pred             HHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q psy17695          9 VGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQL   76 (222)
Q Consensus         9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~l   76 (222)
                      .+...++.++...|++++|+..++++++.+|-+..++..+..++...|+..+|.+.|+++.+.+.+.|
T Consensus       172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eL  239 (388)
T 2ff4_A          172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDL  239 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence            34556778888999999999999999999999999999999999999999999999999998877653

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.88  E-value=0.025  Score=45.93  Aligned_cols=58  Identities=17%  Similarity=0.249  Sum_probs=53.7

Q ss_pred             hcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695         17 SFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus        17 ~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      -+.+.|++++|++.....++-+|.++..+..|...+.-.|+|+.|+..++.+.++.|+
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~   63 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE   63 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence            4678899999999999999999999999999999999999999999988888887775

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=95.56  E-value=0.023  Score=49.59  Aligned_cols=49  Identities=10%  Similarity=0.027  Sum_probs=38.0

Q ss_pred             HHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy17695          9 VGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYE   62 (222)
Q Consensus         9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~   62 (222)
                      ..|..||.+|..+|++++|+++|++|     +++.+|...+.++...|+|+.|.
T Consensus       149 ~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~  197 (449)
T 1b89_A          149 SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQ  197 (449)
T ss_dssp             TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHH
Confidence            35789999999999999999999999     46777766666666665555554

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=95.33  E-value=0.047  Score=40.05  Aligned_cols=70  Identities=4%  Similarity=-0.105  Sum_probs=56.2

Q ss_pred             CCCHHHHHHHHHhcccCCC---cHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          5 PFFKVGILFSNSSFPSPGN---IPEAIQSYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         5 P~~~~~~~~lg~~l~~~g~---~~eA~~~~~~Al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .-.+.+-++++.+|....+   ..+++..++..++-+|. .-+.++.|+..+.++|++++|..+.+.+++..|+
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~  109 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN  109 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence            4467888888888887665   45788888888888884 5678888888889999999999888888887664

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=95.32  E-value=0.029  Score=40.61  Aligned_cols=68  Identities=4%  Similarity=-0.097  Sum_probs=52.6

Q ss_pred             CHHHHHHHHHhcccCCC---cHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          7 FKVGILFSNSSFPSPGN---IPEAIQSYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         7 ~~~~~~~lg~~l~~~g~---~~eA~~~~~~Al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+.+-++++.+|....+   ..+++..++..++.+|. .-+.++.|+..+.++|++++|..+.+.+++..|+
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~  110 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN  110 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence            45677788877776654   44688888888888884 4678888888888888888888888888877665

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=95.14  E-value=0.036  Score=51.02  Aligned_cols=71  Identities=8%  Similarity=-0.056  Sum_probs=64.3

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHH
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCD---WTDYEARMKKLVSIV   72 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~---~~~a~~~~~~~~~~~   72 (222)
                      ..+|.+...|..+...+...+.++.+...|+++++..|.....|...+......++   .+.+...|++++...
T Consensus        60 ~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~  133 (679)
T 4e6h_A           60 EEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKE  133 (679)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSS
T ss_pred             HHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhc
Confidence            45899999999999999999999999999999999999999999999999999888   999999999888666

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=94.40  E-value=0.029  Score=47.82  Aligned_cols=73  Identities=7%  Similarity=-0.078  Sum_probs=54.3

Q ss_pred             CCCCCCHHHHHHHHHhcccC---C-----CcHHHHHHHHH--HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy17695          2 MKTPFFKVGILFSNSSFPSP---G-----NIPEAIQSYRT--ALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSI   71 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~---g-----~~~eA~~~~~~--Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~   71 (222)
                      .++|+++.+|..++.++...   +     ..+.....++.  ++.++|.++.++.-++..+...|++++|...+++++.+
T Consensus       227 ~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L  306 (372)
T 3ly7_A          227 QSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL  306 (372)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            46899999999988888521   1     11111122332  33667999999999999999999999999999999988


Q ss_pred             HHh
Q psy17695         72 VAE   74 (222)
Q Consensus        72 ~~~   74 (222)
                      .+.
T Consensus       307 n~s  309 (372)
T 3ly7_A          307 EMS  309 (372)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.28  E-value=0.083  Score=52.39  Aligned_cols=56  Identities=14%  Similarity=0.045  Sum_probs=46.3

Q ss_pred             CHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17695          7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVS   70 (222)
Q Consensus         7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~   70 (222)
                      +...+.++|..+.+.|++++|+.+|.+|        ..|..++.++.++|++++|.++++++..
T Consensus      1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n 1249 (1630)
T 1xi4_A         1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANS 1249 (1630)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCC
Confidence            4456778999999999999999999986        4788888999899999998888877643

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.14  E-value=0.12  Score=48.05  Aligned_cols=56  Identities=16%  Similarity=0.151  Sum_probs=49.7

Q ss_pred             HHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17695         10 GILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARM   65 (222)
Q Consensus        10 ~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~   65 (222)
                      .+..-+..+...|+++-|+++-++|+.+.|+.-..|+.|+.+|..+++|+.|.-.+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtL  394 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAI  394 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHH
Confidence            44455677788999999999999999999999999999999999999999988533

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=94.12  E-value=0.17  Score=37.03  Aligned_cols=46  Identities=7%  Similarity=-0.081  Sum_probs=39.9

Q ss_pred             CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17695          6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHC   51 (222)
Q Consensus         6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~   51 (222)
                      +.-+.++.|+..+.++|+|++|..+.+..|+++|++.++....-.+
T Consensus        75 ~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~I  120 (144)
T 1y8m_A           75 RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  120 (144)
T ss_dssp             THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            3567889999999999999999999999999999999887665443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=94.00  E-value=0.15  Score=36.91  Aligned_cols=47  Identities=6%  Similarity=-0.070  Sum_probs=41.4

Q ss_pred             CHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy17695          7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ   53 (222)
Q Consensus         7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~   53 (222)
                      .-+.++.||..+.++|+|++|..+.++.|+++|++.+|......+-.
T Consensus        77 ~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie~  123 (134)
T 3o48_A           77 RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVED  123 (134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999877655533

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=94.00  E-value=0.14  Score=45.24  Aligned_cols=60  Identities=17%  Similarity=0.077  Sum_probs=54.2

Q ss_pred             HHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17695         10 GILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLV   69 (222)
Q Consensus        10 ~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~   69 (222)
                      .+..||.+.+-...++.|..+|.+|+.+.|++...++.||.+....++.-++.-.|-+++
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl  213 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI  213 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHH
Confidence            556799999999999999999999999999999999999999999999888887776655

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=93.88  E-value=0.11  Score=38.56  Aligned_cols=70  Identities=11%  Similarity=-0.007  Sum_probs=55.9

Q ss_pred             CCCCCCCHHHHHHHHHhcccCCCc------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPGNI------PEAIQSYRTALKLKPDF--------PDAYCNLAHCLQIVCDWTDYEARMK   66 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g~~------~eA~~~~~~Al~l~P~~--------~~a~~~l~~~~~~~~~~~~a~~~~~   66 (222)
                      ++.+|++++.|......+.+.|+.      +.-++.|++|+..-|-.        ...|.+.+.. ...+|.++|.+.|+
T Consensus         6 ~~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~   84 (161)
T 4h7y_A            6 IMMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQ   84 (161)
T ss_dssp             ----CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHH
T ss_pred             eeeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHH
Confidence            467899999999999999999999      99999999999987653        3456666644 56689999999999


Q ss_pred             HHHHH
Q psy17695         67 KLVSI   71 (222)
Q Consensus        67 ~~~~~   71 (222)
                      .++.+
T Consensus        85 ~a~~~   89 (161)
T 4h7y_A           85 MARAN   89 (161)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99876

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=90.77  E-value=0.4  Score=36.01  Aligned_cols=64  Identities=9%  Similarity=0.030  Sum_probs=52.3

Q ss_pred             HHHHHHhcccCCCcHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695         11 ILFSNSSFPSPGNIPEAIQSYRTALKLKPDFP---------DAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus        11 ~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~---------~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +..-...+.+.|.|+.|+.....++.+..+++         ++++.+|.++...++|..|+..|++++.....
T Consensus        23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~   95 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKA   95 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence            34445667889999999999999888753333         47899999999999999999999999877653

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=88.91  E-value=1.6  Score=38.38  Aligned_cols=62  Identities=8%  Similarity=-0.079  Sum_probs=39.2

Q ss_pred             CHHHHHHHHHhcccCCCcHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17695          7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLV   69 (222)
Q Consensus         7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~   69 (222)
                      +...++.+-..|.+.|++++|...|++..+.  .| +..++..+...+...|++++|.+.+++..
T Consensus       104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~  167 (501)
T 4g26_A          104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMV  167 (501)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence            4556666666677777777777777666554  34 35566666666666677766666665544

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=88.48  E-value=1.7  Score=39.57  Aligned_cols=62  Identities=10%  Similarity=-0.066  Sum_probs=45.3

Q ss_pred             CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17695          4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTAL--------KLKPDFPDAYCNLAHCLQIVCDWTDYEARM   65 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al--------~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~   65 (222)
                      ..+++..|..+|....+.|+++.|+.+|.++-        ....++.+.+..++......|+++.|..+|
T Consensus       677 ~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~  746 (814)
T 3mkq_A          677 DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAY  746 (814)
T ss_dssp             TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHH
Confidence            45678899999999999999999999999862        223556666666666666666666665444

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=87.80  E-value=2.8  Score=36.76  Aligned_cols=63  Identities=10%  Similarity=-0.019  Sum_probs=55.4

Q ss_pred             CHHHHHHHHHhcccCCCcHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17695          7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVS   70 (222)
Q Consensus         7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~   70 (222)
                      +...|+.+=..|.+.|++++|...|++..+.  .|+ ...+..|..++...|++++|.+.+++..+
T Consensus       139 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd-~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~  203 (501)
T 4g26_A          139 RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE-EPELAALLKVSMDTKNADKVYKTLQRLRD  203 (501)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence            5678888889999999999999999998876  454 67889999999999999999999888765

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=86.45  E-value=1.3  Score=32.71  Aligned_cols=65  Identities=11%  Similarity=-0.099  Sum_probs=54.5

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      ...|...+.. ...++.++|.+.|+.++++.-.++..|...+..-..+|+...|...+.+++...|
T Consensus        61 I~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~  125 (161)
T 4h7y_A           61 ARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA  125 (161)
T ss_dssp             HHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence            3456666644 5669999999999999999999999999999999999999999988888886555

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=83.42  E-value=1.4  Score=37.95  Aligned_cols=66  Identities=11%  Similarity=0.054  Sum_probs=55.2

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPD---FPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~---~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      ..++..+|..+.+.|++++|.++|.++...-..   -.+.+.+...+....++|..+...+.++.....
T Consensus       131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~  199 (429)
T 4b4t_R          131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIE  199 (429)
T ss_dssp             SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhh
Confidence            346788999999999999999999999876432   357788888888999999999999999876654

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=83.34  E-value=2.8  Score=36.68  Aligned_cols=48  Identities=6%  Similarity=-0.064  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695         26 EAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus        26 eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .....|++++...|.++..|.+.+..+...|+.++|...|++++.. |.
T Consensus       197 Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~  244 (493)
T 2uy1_A          197 RMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SD  244 (493)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CC
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CC
Confidence            3556777777777777777777777777777777777777777766 64

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=82.81  E-value=2.9  Score=33.85  Aligned_cols=44  Identities=14%  Similarity=0.020  Sum_probs=40.8

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHH
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAY   45 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~   45 (222)
                      +.+|.|+..-..|-.+|.-.|+|+.|.+-++.+.+++|+....-
T Consensus        25 R~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a   68 (273)
T 1zbp_A           25 KASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA   68 (273)
T ss_dssp             HTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHH
Confidence            57899999999999999999999999999999999999987654

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=82.29  E-value=1.6  Score=29.27  Aligned_cols=27  Identities=22%  Similarity=0.137  Sum_probs=14.7

Q ss_pred             HHHHHHHHhcccCCCcHHHHHHHHHHH
Q psy17695          9 VGILFSNSSFPSPGNIPEAIQSYRTAL   35 (222)
Q Consensus         9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al   35 (222)
                      ..+...+..+...|+|++||.|.++|.
T Consensus        16 H~~~RrAe~ll~~gkydeAIech~kAa   42 (97)
T 2crb_A           16 HQQSRRADRLLAAGKYEEAISCHRKAT   42 (97)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence            344445555555666666655555544

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=81.50  E-value=3.5  Score=31.11  Aligned_cols=58  Identities=10%  Similarity=-0.126  Sum_probs=46.5

Q ss_pred             CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy17695          6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSI   71 (222)
Q Consensus         6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~   71 (222)
                      .+++.-+.++   .+.|+++.|.+..+..     ++...|-.||......|+.+-|+.+|+++..+
T Consensus         6 ~D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~   63 (177)
T 3mkq_B            6 QDPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSF   63 (177)
T ss_dssp             SCHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH
T ss_pred             CChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH
Confidence            3455555554   4689999999887654     78999999999999999999999999877543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=81.04  E-value=2.3  Score=37.23  Aligned_cols=47  Identities=9%  Similarity=-0.033  Sum_probs=41.4

Q ss_pred             CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy17695          4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHC   51 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~   51 (222)
                      .|..+..|...+..+...|+.++|...|++|++. |.+...+...+..
T Consensus       209 ~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~  255 (493)
T 2uy1_A          209 FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLV  255 (493)
T ss_dssp             TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhh
Confidence            4888999999999999999999999999999999 9998776655443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	222
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-06
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	5e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	9e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	5e-05
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	7e-04
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	6e-05
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	0.004
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	1e-04
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	3e-04
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	0.001
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	0.002

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 45.0 bits (106), Expect = 2e-06
 Identities = 15/125 (12%), Positives = 37/125 (29%), Gaps = 14/125 (11%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
           G + +A++    A+K  P       +    L I  D+   + ++ + +     +L     
Sbjct: 10  GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSI-----KLF---- 60

Query: 82  PSVHPHHSMLYPL---THEYRKAIAARHANLCLL--KAMRAKVWQARTESPLFCVQRYAQ 136
           P   P  S L  L       +           L   + +   +            ++ ++
Sbjct: 61  PEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSE 120

Query: 137 RLESL 141
               +
Sbjct: 121 LALQI 125

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 5e-06
 Identities = 18/198 (9%), Positives = 45/198 (22%), Gaps = 7/198 (3%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVS-------IVAE 74
           G++P A+  +  A++  P   +A+  L              + +++ +         +  
Sbjct: 33  GDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMA 92

Query: 75  QLDKNRLPSVHPHHSMLYPLTHEYRKAIAARHANLCLLKAMRAKVWQARTESPLFCVQRY 134
                   S+      +      Y  A A                   R    L     +
Sbjct: 93  LAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLF 152

Query: 135 AQRLESLYKVMWDRYSQNLPVTHITQAKIAREAEHFLDLSQVPCNGKAADRIHKDGIHIL 194
            +  E     +    +   P        +   +  +           +         + L
Sbjct: 153 LEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKL 212

Query: 195 VNMNGYTKGARNEIFALR 212
                    +   + A R
Sbjct: 213 GATLANGNQSEEAVAAYR 230

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 2e-05
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 6/83 (7%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
           G I  AI +YR A++L+P FPDAYCNLA+ L+      + E      +            
Sbjct: 251 GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR------LCPTH 304

Query: 82  PSVHPHHSMLYPLTHEYRKAIAA 104
                + + +        +A+  
Sbjct: 305 ADSLNNLANIKREQGNIEEAVRL 327

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 4e-05
 Identities = 13/36 (36%), Positives = 23/36 (63%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCD 57
           G + EA+  Y+ A+++ P F DAY N+ + L+ + D
Sbjct: 353 GKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 2e-04
 Identities = 19/50 (38%), Positives = 28/50 (56%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSI 71
           GNI EA++ YR AL++ P+F  A+ NLA  LQ      +     K+ + I
Sbjct: 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 5e-04
 Identities = 7/44 (15%), Positives = 14/44 (31%)

Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARM 65
            +  +      A+K  P   +AY NL +  +      +     
Sbjct: 47 RRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHY 90

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 9e-04
 Identities = 5/50 (10%), Positives = 11/50 (22%)

Query: 22 GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSI 71
          G+   A +      + +PD       L+                   +  
Sbjct: 13 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 5e-05
 Identities = 8/28 (28%), Positives = 11/28 (39%)

Query: 26 EAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
          ++ Q  R A  LK D  D+    A    
Sbjct: 4  QSAQYLRQAEVLKADMTDSKLGPAEVWT 31

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (87), Expect = 7e-04
 Identities = 10/32 (31%), Positives = 14/32 (43%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           G+    I  Y  ++ +K  FP A  NL   L 
Sbjct: 200 GDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.3 bits (93), Expect = 6e-05
 Identities = 16/83 (19%), Positives = 24/83 (28%), Gaps = 6/83 (7%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL 81
              PEA   Y  A+   P     Y N A C   +       A  ++ + +        + 
Sbjct: 18  RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL------DGQS 71

Query: 82  PSVHPHHSMLYPLTHEYRKAIAA 104
              H            Y +AIA 
Sbjct: 72  VKAHFFLGQCQLEMESYDEAIAN 94

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.9 bits (79), Expect = 0.004
 Identities = 6/53 (11%), Positives = 19/53 (35%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE 74
            +  EAI + + A  L  +    + +       +     + +  ++ +   +E
Sbjct: 86  ESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESE 138

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 38.8 bits (89), Expect = 1e-04
 Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 1/55 (1%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARM-KKLVSIVAEQ 75
                A   +   L++ P    A   +  C +   +  + + R    +    AEQ
Sbjct: 112 NEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFKKFAEQ 166

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 3e-04
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 26  EAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARM-KKLVSIVAEQLDKNR 80
            A   ++  L+L P+   A   LA C Q +      E ++   +   +AE+ +K +
Sbjct: 114 LARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAK 169

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 8/32 (25%), Positives = 14/32 (43%)

Query: 22  GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ 53
           G + EA ++   A  L P+  D   +   C+ 
Sbjct: 115 GFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.4 bits (80), Expect = 0.002
 Identities = 7/43 (16%), Positives = 14/43 (32%)

Query: 23  NIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARM 65
              +A+   + A ++ P+       L    Q +    D E   
Sbjct: 126 EYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAA 168

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	222
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.34
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.33
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.28
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.27
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.2
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.14
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.1
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.1
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.08
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.06
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.05
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.03
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.02
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.0
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.99
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.98
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.95
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.93
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.92
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.91
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.86
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.83
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.82
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.82
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.81
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.76
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.69
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.62
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.61
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.55
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.55
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.51
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.46
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.43
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.35
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.32
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.29
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.27
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.22
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.2
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.98
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.97
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	97.93
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.9
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.8
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.79
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	97.71
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.69
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.61
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.6
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.54
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	96.94
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	96.86
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	96.79
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.58
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	92.91
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	86.39

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=1e-12  Score=100.07  Aligned_cols=73  Identities=18%  Similarity=0.201  Sum_probs=70.9

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .++|+++.+|+++|.+|..+|++++|+.+|++|++++|+++.+|+++|.++..+|++++|...|++++.+.|+
T Consensus        32 ~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~  104 (201)
T d2c2la1          32 TRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  104 (201)
T ss_dssp             HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            4689999999999999999999999999999999999999999999999999999999999999999999986

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=7e-13  Score=93.89  Aligned_cols=73  Identities=16%  Similarity=0.242  Sum_probs=69.2

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +.+|+++.+|.++|.++..+|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|++++++.|+
T Consensus        31 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~  103 (117)
T d1elwa_          31 KLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN  103 (117)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             hcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            4689999999999999999999999999999999999999999999999999999999999999999977765

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=3.3e-12  Score=94.76  Aligned_cols=73  Identities=10%  Similarity=0.039  Sum_probs=69.8

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..+|+++.+|+++|.++..+|++++|+.+|+++++++|+++.++.++|.++..+|++++|..++++++.+.|+
T Consensus        38 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~  110 (159)
T d1a17a_          38 ELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH  110 (159)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             ccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            4689999999999999999999999999999999999999999999999999999999999999999988775

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.27  E-value=2.5e-12  Score=90.25  Aligned_cols=64  Identities=11%  Similarity=0.020  Sum_probs=33.7

Q ss_pred             HHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695         11 ILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus        11 ~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ++++|.++.+.|++++|+.+|+++++++|+++.++.++|.++...+++++|+..+++++++.|+
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~   82 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK   82 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccc
Confidence            3445555555555555555555555555555555555555555555555555555555555443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=2.5e-11  Score=93.10  Aligned_cols=72  Identities=8%  Similarity=0.003  Sum_probs=67.7

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..|.++.+|+++|.++..+|++++|+.+|++|++++|+++.+++++|.++..+|++++|...|++++...+.
T Consensus        31 i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~  102 (192)
T d1hh8a_          31 VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG  102 (192)
T ss_dssp             SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT
T ss_pred             cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence            356789999999999999999999999999999999999999999999999999999999999999876654

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=3.1e-11  Score=94.99  Aligned_cols=69  Identities=14%  Similarity=0.183  Sum_probs=42.0

Q ss_pred             CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..+.+++++|.+|..+|++++|+..|++|++++|+++.+++++|.++..+|++++|+..|++++.+.|+
T Consensus        35 ~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  103 (259)
T d1xnfa_          35 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT  103 (259)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh
Confidence            344556666666666666666666666666666666666666666666666666666666666655554

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.1e-10  Score=82.04  Aligned_cols=68  Identities=15%  Similarity=0.085  Sum_probs=65.0

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      +..+-++|+.+...|+|++|+.+|+++++++|+++.++.|+|.++..+|+|++|+..+++++.+.|+.
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~   71 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN   71 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCccc
Confidence            56778999999999999999999999999999999999999999999999999999999999999974

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.10  E-value=3.9e-11  Score=89.77  Aligned_cols=72  Identities=21%  Similarity=0.159  Sum_probs=68.3

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+|.+...+.++|.++.++|++++|+..|++|++++|+++.+++++|.++..+|++++|...|++++++.|+
T Consensus        72 ~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~  143 (169)
T d1ihga1          72 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE  143 (169)
T ss_dssp             GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            356778899999999999999999999999999999999999999999999999999999999999998875

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=7e-11  Score=92.84  Aligned_cols=73  Identities=14%  Similarity=0.081  Sum_probs=70.2

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .++|+++.+|+++|.++..+|++++|+.+|+++++++|+++.++.++|.++..+|++++|...++++++..|+
T Consensus        65 ~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  137 (259)
T d1xnfa_          65 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN  137 (259)
T ss_dssp             HHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             ccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc
Confidence            4689999999999999999999999999999999999999999999999999999999999999999988775

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=1.6e-10  Score=93.71  Aligned_cols=74  Identities=15%  Similarity=0.142  Sum_probs=71.1

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      ..+|+++.+|.++|.++..+|++++|+.+|+++++++|+++.++.++|.++..+|++++|...|++++++.|+.
T Consensus       200 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  273 (323)
T d1fcha_         200 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS  273 (323)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred             ccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcC
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999974

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.05  E-value=4.2e-11  Score=87.76  Aligned_cols=73  Identities=14%  Similarity=0.103  Sum_probs=61.9

Q ss_pred             CCCCCCHHHHHHHHHhcccC----------CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-----------HHH
Q psy17695          2 MKTPFFKVGILFSNSSFPSP----------GNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCD-----------WTD   60 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~----------g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~-----------~~~   60 (222)
                      .++|+++++++++|.++..+          +.+++|+..|++|++++|+++.+++++|.++..+|.           +++
T Consensus        25 ~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~  104 (145)
T d1zu2a1          25 KSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDL  104 (145)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred             hhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHH
Confidence            46899999999999999854          556899999999999999999999999999987653           566


Q ss_pred             HHHHHHHHHHHHHh
Q psy17695         61 YEARMKKLVSIVAE   74 (222)
Q Consensus        61 a~~~~~~~~~~~~~   74 (222)
                      |.++|++++.+.|+
T Consensus       105 A~~~~~kal~l~P~  118 (145)
T d1zu2a1         105 ATQFFQQAVDEQPD  118 (145)
T ss_dssp             HHHHHHHHHHHCTT
T ss_pred             hhhhhhcccccCCC
Confidence            77777777766664

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.03  E-value=3.3e-10  Score=79.07  Aligned_cols=68  Identities=15%  Similarity=-0.053  Sum_probs=65.3

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLV   69 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~   69 (222)
                      ..+|+++.+|.++|.++...|++++|+.+|+++++++|+++.++.++|.++..+|++++|.+.+++.+
T Consensus        44 ~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          44 QKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            46899999999999999999999999999999999999999999999999999999999999998875

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.02  E-value=4.6e-10  Score=82.66  Aligned_cols=66  Identities=15%  Similarity=0.114  Sum_probs=63.7

Q ss_pred             HHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          9 VGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..++|+|.+|.++|++++|+..|++|++++|+++.+++++|.++..+|+|++|...|++++.+.|+
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~  133 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN  133 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            578899999999999999999999999999999999999999999999999999999999999886

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.9e-10  Score=81.92  Aligned_cols=74  Identities=11%  Similarity=-0.033  Sum_probs=66.0

Q ss_pred             CCCCCCHHHHHHHHHhcccCC---CcHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPG---NIPEAIQSYRTALKLKPDF--PDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g---~~~eA~~~~~~Al~l~P~~--~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      ..+|+++++++++|.+|...+   ++++|+..|+++++.+|++  ..+++++|.++..+|++++|..+|++++++.|+.
T Consensus        27 ~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~  105 (122)
T d1nzna_          27 AAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN  105 (122)
T ss_dssp             HHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCC
Confidence            468999999999999998654   5567999999999999866  4689999999999999999999999999998863

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=5.4e-10  Score=75.73  Aligned_cols=69  Identities=12%  Similarity=-0.071  Sum_probs=63.0

Q ss_pred             CHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF-------PDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~-------~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      .++-.+.+|.++.+.|++++|+.+|++|+++.|.+       +.++.+||.++..+|++++|...|++++++.|+.
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~   79 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH   79 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCC
Confidence            35678999999999999999999999999997654       6889999999999999999999999999998873

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.98  E-value=5e-10  Score=84.69  Aligned_cols=68  Identities=16%  Similarity=0.134  Sum_probs=64.9

Q ss_pred             CHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .++.+...|+.+.+.|++++|+..|++|++++|+++.+|+++|.++..+|++++|+..|++++.+.|+
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~   70 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ   70 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC
Confidence            56778899999999999999999999999999999999999999999999999999999999988776

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.1e-09  Score=82.03  Aligned_cols=67  Identities=16%  Similarity=0.130  Sum_probs=63.9

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ...+.++|.+|.++|++++|+..++++++++|+++.+++++|.++..+|++++|...|++++.+.|+
T Consensus        62 ~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~  128 (170)
T d1p5qa1          62 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN  128 (170)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Confidence            3568899999999999999999999999999999999999999999999999999999999998875

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.6e-09  Score=79.80  Aligned_cols=68  Identities=12%  Similarity=0.090  Sum_probs=64.6

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      ++.+...|+.+.+.|++++|+.+|+++++++|+++.+|.++|.++..+|+|++|...|++++++.|+.
T Consensus        10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~   77 (159)
T d1a17a_          10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY   77 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccc
Confidence            45678899999999999999999999999999999999999999999999999999999999998874

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=1.9e-09  Score=75.67  Aligned_cols=66  Identities=24%  Similarity=0.242  Sum_probs=62.8

Q ss_pred             HHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          9 VGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         9 ~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .-+...|..+...|++++|+.+|+++++++|+++.++.++|.++..+|++++|+..+.+++.+.|+
T Consensus         4 ~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~   69 (117)
T d1elwa_           4 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD   69 (117)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccc
Confidence            446788999999999999999999999999999999999999999999999999999999999886

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.91  E-value=1.6e-09  Score=80.82  Aligned_cols=67  Identities=9%  Similarity=0.145  Sum_probs=63.6

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ...+.|+|.+|..+|++++|+..++++++++|++..+++++|.++..+|++++|..+|++++.+.|+
T Consensus        64 ~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~  130 (168)
T d1kt1a1          64 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ  130 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            4568899999999999999999999999999999999999999999999999999999999988775

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=7e-10  Score=91.01  Aligned_cols=72  Identities=8%  Similarity=0.001  Sum_probs=45.2

Q ss_pred             CCCCCHHHHHHHHHhcccCCC-cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          3 KTPFFKVGILFSNSSFPSPGN-IPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~-~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ++|++..+|+++|.++..+|+ +++|+.+|+++++++|++..+|.++|.++..+|++++|.+.+.+++++.|+
T Consensus        72 lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~  144 (315)
T d2h6fa1          72 LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK  144 (315)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred             HCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhc
Confidence            456666666666666666553 566666666666666666666666666666666666666666666665554

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=3.3e-09  Score=85.70  Aligned_cols=73  Identities=16%  Similarity=0.112  Sum_probs=64.5

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +.+|+++.+|.++|.++..+|++++|+.+|+++++++|++...+.++|.++...|++++|.+.+++++...|.
T Consensus        47 ~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  119 (323)
T d1fcha_          47 QQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA  119 (323)
T ss_dssp             HSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT
T ss_pred             HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHHhccc
Confidence            4688999999999999999999999999999999999999999999999999999999999888888877665

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.9e-09  Score=88.31  Aligned_cols=72  Identities=8%  Similarity=-0.029  Sum_probs=41.7

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .+|++..+|+++|.++..+|++++|+..|+++++++|++..+|+++|.++..++++++|..++++++.+.|.
T Consensus       107 ~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~  178 (315)
T d2h6fa1         107 EQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR  178 (315)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred             HHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc
Confidence            355555555555555555555555555555555555555555555555555555555555555555555543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=3.2e-09  Score=86.26  Aligned_cols=73  Identities=14%  Similarity=0.132  Sum_probs=68.6

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..+|+++.++..+|.++..+|++++|+..|+++++++|+++.++.++|.++...|++++|...+..+....+.
T Consensus        27 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~   99 (388)
T d1w3ba_          27 RQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD   99 (388)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccccccccccccccc
Confidence            4589999999999999999999999999999999999999999999999999999999999999988876553

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1.3e-09  Score=77.80  Aligned_cols=70  Identities=11%  Similarity=0.076  Sum_probs=60.7

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPD-------AYCNLAHCLQIVCDWTDYEARMKKLVSI   71 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~-------a~~~l~~~~~~~~~~~~a~~~~~~~~~~   71 (222)
                      .++|+++.+++++|.+|..+|++++|+..|++|++++|++..       ++.++|.++..++++++|...|++++..
T Consensus        32 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          32 ELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            458999999999999999999999999999999999998865       5566677777888888888888877654

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=5.3e-09  Score=84.91  Aligned_cols=72  Identities=28%  Similarity=0.305  Sum_probs=57.2

Q ss_pred             CCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          3 KTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         3 ~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ..|.++..+..+|.++..+|++++|+.+|+++++++|+++.+++++|.++...|++++|...|++++++.|+
T Consensus       300 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~  371 (388)
T d1w3ba_         300 LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT  371 (388)
T ss_dssp             HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred             cCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            357777778888888888888888888888888888888888888888888888888888888887766654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=1.1e-08  Score=77.92  Aligned_cols=72  Identities=14%  Similarity=0.142  Sum_probs=64.6

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHH
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF----------------PDAYCNLAHCLQIVCDWTDYEARM   65 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~----------------~~a~~~l~~~~~~~~~~~~a~~~~   65 (222)
                      .++|+++.+|+++|.++..+|++++|+..|++|++..|.+                .++++++|.++..+++|++|.+.+
T Consensus        64 ~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l  143 (192)
T d1hh8a_          64 NRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQL  143 (192)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            4689999999999999999999999999999999886654                478899999999999999999999


Q ss_pred             HHHHHHHH
Q psy17695         66 KKLVSIVA   73 (222)
Q Consensus        66 ~~~~~~~~   73 (222)
                      .+++.+.+
T Consensus       144 ~~A~~~~~  151 (192)
T d1hh8a_         144 ALATSMKS  151 (192)
T ss_dssp             HHHHTTCC
T ss_pred             HHHHhcCC
Confidence            88875544

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=2.5e-08  Score=67.20  Aligned_cols=51  Identities=18%  Similarity=0.131  Sum_probs=46.5

Q ss_pred             CCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy17695          5 PFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIV   55 (222)
Q Consensus         5 P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~   55 (222)
                      ++.+.++.+||.++.++|++++|+.+|+++|+++|+++.++.|++.+...+
T Consensus        43 ~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          43 IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            455789999999999999999999999999999999999999998876544

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.61  E-value=8.6e-08  Score=72.17  Aligned_cols=70  Identities=10%  Similarity=0.039  Sum_probs=66.3

Q ss_pred             CHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q psy17695          7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQL   76 (222)
Q Consensus         7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~l   76 (222)
                      ...++.+++.++..+|++++|+.+++++++++|.+..+|.+++.++...|++++|...|+++.+.+.+.+
T Consensus        66 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eL  135 (179)
T d2ff4a2          66 KVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDL  135 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh
Confidence            4578999999999999999999999999999999999999999999999999999999999999888753

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.55  E-value=5.9e-08  Score=71.02  Aligned_cols=69  Identities=17%  Similarity=0.090  Sum_probs=62.0

Q ss_pred             CHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPD-----------FPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~-----------~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      .+.+|+++|.+|..+|++++|+..+++++++.|+           ...+++++|.++..+|++++|.+.|++++++.++.
T Consensus        54 ~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          54 DAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            3578999999999999999999999999988543           34578999999999999999999999999999973

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.55  E-value=5.6e-08  Score=71.98  Aligned_cols=61  Identities=11%  Similarity=0.106  Sum_probs=54.7

Q ss_pred             CCCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy17695          1 MMKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY   61 (222)
Q Consensus         1 l~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a   61 (222)
                      |.++|+++.+|+++|.+|..+|++++|+.+|++|++++|++..+...+..+........+.
T Consensus       104 l~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~  164 (169)
T d1ihga1         104 LEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK  164 (169)
T ss_dssp             HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4679999999999999999999999999999999999999999999999887766544443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=9.7e-08  Score=70.99  Aligned_cols=61  Identities=18%  Similarity=0.144  Sum_probs=55.6

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYE   62 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~   62 (222)
                      .++|+++.+++++|.++..+|++++|+.+|+++++++|+++.+...++.+...+....+.+
T Consensus        90 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1          90 ELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999999999999999988776665544

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.46  E-value=1.9e-07  Score=68.19  Aligned_cols=69  Identities=14%  Similarity=0.103  Sum_probs=60.8

Q ss_pred             CHHHHHHH--HHhcccCCCcHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy17695          7 FKVGILFS--NSSFPSPGNIPEAIQSYRTALKLKPDF------------PDAYCNLAHCLQIVCDWTDYEARMKKLVSIV   72 (222)
Q Consensus         7 ~~~~~~~l--g~~l~~~g~~~eA~~~~~~Al~l~P~~------------~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~   72 (222)
                      .+.++..+  |..+...|+|++|+..|++|+++.|+.            +.++.|+|.++..+|+|++|...+++++.+.
T Consensus         6 ~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~   85 (156)
T d2hr2a1           6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF   85 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcc
Confidence            34566666  778889999999999999999998875            3579999999999999999999999999998


Q ss_pred             Hhh
Q psy17695         73 AEQ   75 (222)
Q Consensus        73 ~~~   75 (222)
                      ++.
T Consensus        86 ~~~   88 (156)
T d2hr2a1          86 NRR   88 (156)
T ss_dssp             HHH
T ss_pred             ccc
Confidence            874

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=1.6e-07  Score=66.25  Aligned_cols=54  Identities=11%  Similarity=-0.058  Sum_probs=46.8

Q ss_pred             CCCCCC--HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy17695          2 MKTPFF--KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIV   55 (222)
Q Consensus         2 ~~~P~~--~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~   55 (222)
                      ..+|.+  +.++++||.+|..+|++++|+.+|+++++++|++..++..+..+...+
T Consensus        64 ~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          64 PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence            345544  569999999999999999999999999999999999999998776553

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.35  E-value=4.2e-07  Score=67.14  Aligned_cols=69  Identities=9%  Similarity=0.093  Sum_probs=58.1

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY-EARMKKLVS   70 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a-~~~~~~~~~   70 (222)
                      .++|++..+++++|.++..+|++++|+.+|+++++++|++..++..++.+...+....+. ...|.++.+
T Consensus        92 ~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f~  161 (168)
T d1kt1a1          92 GLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFK  161 (168)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence            468999999999999999999999999999999999999999999999998777665442 334444433

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.32  E-value=2e-07  Score=67.98  Aligned_cols=54  Identities=15%  Similarity=0.049  Sum_probs=50.3

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIV   55 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~   55 (222)
                      ..+|++..+|+++|.++..+|++++|+.+|+++++++|++..+..++..+...+
T Consensus        95 ~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl  148 (153)
T d2fbna1          95 KIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL  148 (153)
T ss_dssp             HHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999999999999999998876654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.29  E-value=1.3e-07  Score=68.55  Aligned_cols=54  Identities=15%  Similarity=0.118  Sum_probs=48.9

Q ss_pred             CCCCCCHHHHHHHHHhcccCCC-----------cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGN-----------IPEAIQSYRTALKLKPDFPDAYCNLAHCLQIV   55 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~-----------~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~   55 (222)
                      .++|+++.+|+++|.+|..+|+           +++|+++|++|++++|++..++.+|+.+....
T Consensus        69 ~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~  133 (145)
T d1zu2a1          69 LIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP  133 (145)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHH
T ss_pred             HhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHH
Confidence            4689999999999999998764           69999999999999999999999999886554

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.27  E-value=1.1e-06  Score=70.01  Aligned_cols=59  Identities=17%  Similarity=0.236  Sum_probs=54.7

Q ss_pred             hcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695         17 SFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus        17 ~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      -..+.|++++|+..|+++++.+|+++.++.+|+.++...|+|++|.+.+++++++.|+.
T Consensus         5 ~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~   63 (264)
T d1zbpa1           5 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY   63 (264)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc
Confidence            34577999999999999999999999999999999999999999999999999988864

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=1.2e-06  Score=75.71  Aligned_cols=66  Identities=15%  Similarity=0.068  Sum_probs=62.0

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVA   73 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   73 (222)
                      ..++.++|.++...|++++|+.+|++|++++|++..++++||.++...|++.+|...|.+++...+
T Consensus       152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~  217 (497)
T d1ya0a1         152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF  217 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence            467999999999999999999999999999999999999999999999999999999999986543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.20  E-value=9.4e-07  Score=70.41  Aligned_cols=73  Identities=14%  Similarity=0.114  Sum_probs=62.9

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH----------------------------
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQ----------------------------   53 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~----------------------------   53 (222)
                      +.+|+++.++.+||.+|...|++++|++.|+++++++|++..++.+++.++.                            
T Consensus        24 ~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l  103 (264)
T d1zbpa1          24 KASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSL  103 (264)
T ss_dssp             HTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHH
T ss_pred             HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHH
Confidence            5789999999999999999999999999999999999999999888876642                            


Q ss_pred             -------HcCCHHHHHHHHHHHHHHHHh
Q psy17695         54 -------IVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus        54 -------~~~~~~~a~~~~~~~~~~~~~   74 (222)
                             ..|++++|.+.++++.+..|+
T Consensus       104 ~~a~~~~~~gd~~~A~~~~~~a~e~~p~  131 (264)
T d1zbpa1         104 VSFNLSMVSQDYEQVSELALQIEELRQE  131 (264)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence                   357777777777777776664

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.98  E-value=1.6e-05  Score=62.77  Aligned_cols=69  Identities=19%  Similarity=0.028  Sum_probs=62.2

Q ss_pred             CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF-----PDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~-----~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      -.++.+...|.++...|++++|+..|++++++.|++     ..++.++|.++...|++++|...+++++++.+.
T Consensus        10 ~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~   83 (366)
T d1hz4a_          10 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ   83 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence            356788889999999999999999999999999987     358899999999999999999999999987764

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.97  E-value=6.3e-06  Score=61.58  Aligned_cols=67  Identities=13%  Similarity=-0.076  Sum_probs=61.3

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCH----------------------HHHHHHHHHHHHcCCHHHHHHHH
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFP----------------------DAYCNLAHCLQIVCDWTDYEARM   65 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~----------------------~a~~~l~~~~~~~~~~~~a~~~~   65 (222)
                      .+.+.+.|..+...|++++|+++|.+|+++.|+..                      .++.+++.++...|+|++|..++
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~   90 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL   90 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            57899999999999999999999999999977553                      57899999999999999999999


Q ss_pred             HHHHHHHHh
Q psy17695         66 KKLVSIVAE   74 (222)
Q Consensus        66 ~~~~~~~~~   74 (222)
                      ++++++.|.
T Consensus        91 ~~al~~~P~   99 (179)
T d2ff4a2          91 EALTFEHPY   99 (179)
T ss_dssp             HHHHHHSTT
T ss_pred             HHHHHhCCc
Confidence            999998886

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.93  E-value=5.4e-06  Score=67.02  Aligned_cols=73  Identities=8%  Similarity=0.106  Sum_probs=53.2

Q ss_pred             CCCCCCHHHHHHHHHhcccCCC----------cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHH
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGN----------IPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCD--WTDYEARMKKLV   69 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~----------~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~--~~~a~~~~~~~~   69 (222)
                      ..+|++..+|+..+.++..+++          +++|+.+|+++++.+|+++.+|.++|.++...++  ++++...+.+++
T Consensus        57 ~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al  136 (334)
T d1dcea1          57 GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFL  136 (334)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred             HHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHH
Confidence            3578888887777766555443          6778888888888888888888888777766654  777777777777


Q ss_pred             HHHHh
Q psy17695         70 SIVAE   74 (222)
Q Consensus        70 ~~~~~   74 (222)
                      ...|+
T Consensus       137 ~~~~~  141 (334)
T d1dcea1         137 EADER  141 (334)
T ss_dssp             HHCTT
T ss_pred             hhCch
Confidence            76654

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.90  E-value=9.4e-06  Score=64.59  Aligned_cols=67  Identities=9%  Similarity=0.109  Sum_probs=60.4

Q ss_pred             HHHHHHHHHhcccCCCcHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          8 KVGILFSNSSFPSPGNIPEAIQSYRTALKLK------PDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         8 ~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~------P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      ++.+...|.+|..+|++++|+.+|++|+++.      ++...++.++|.++..+|++++|.+++++++.+.++
T Consensus        37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~  109 (290)
T d1qqea_          37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTH  109 (290)
T ss_dssp             HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhh
Confidence            5678999999999999999999999999983      334578999999999999999999999999998775

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=1.6e-06  Score=74.87  Aligned_cols=83  Identities=6%  Similarity=-0.031  Sum_probs=45.5

Q ss_pred             CCCCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCC
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQLDKNRL   81 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~l~~~~~   81 (222)
                      ..+|++...+.++|.++.+.|+.++|+..+++++.++|.  .++.++|.++...++|++|...|++++.+.|+.      
T Consensus       114 ~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~------  185 (497)
T d1ya0a1         114 NVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSN------  185 (497)
T ss_dssp             -----------------------------CCHHHHHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB------
T ss_pred             CCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc------
Confidence            357899999999999999999999999999999998874  789999999999999999999999999999873      


Q ss_pred             CCCCccccccccC
Q psy17695         82 PSVHPHHSMLYPL   94 (222)
Q Consensus        82 ~~~~p~~~l~~~~   94 (222)
                        ..+|+.++...
T Consensus       186 --~~~~~~Lg~~~  196 (497)
T d1ya0a1         186 --GQPYNQLAILA  196 (497)
T ss_dssp             --SHHHHHHHHHH
T ss_pred             --hHHHHHHHHHH
Confidence              44666655543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.79  E-value=1.6e-05  Score=55.56  Aligned_cols=68  Identities=4%  Similarity=-0.076  Sum_probs=60.3

Q ss_pred             HHHHHHHHHhcccC---CCcHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q psy17695          8 KVGILFSNSSFPSP---GNIPEAIQSYRTALKLKPDFP-DAYCNLAHCLQIVCDWTDYEARMKKLVSIVAEQ   75 (222)
Q Consensus         8 ~~~~~~lg~~l~~~---g~~~eA~~~~~~Al~l~P~~~-~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   75 (222)
                      +.+.+++|.+|...   .+..+|+..++.+++.+|.+. +.+++||..+.++|++++|..++++++++.|+.
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n  106 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN  106 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCc
Confidence            67888899888744   567899999999999999775 899999999999999999999999999998863

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.71  E-value=1.3e-05  Score=64.59  Aligned_cols=73  Identities=7%  Similarity=-0.144  Sum_probs=63.1

Q ss_pred             CCCCCCHHHHHHHHHhcccCCC--cHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          2 MKTPFFKVGILFSNSSFPSPGN--IPEAIQSYRTALKLKPDFPDAY-CNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         2 ~~~P~~~~~~~~lg~~l~~~g~--~~eA~~~~~~Al~l~P~~~~a~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +.+|+++.+|+++|.++..+++  +++|+.+++++++++|++..++ ..+|.++...+.+++|...+++++...|+
T Consensus       101 ~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~  176 (334)
T d1dcea1         101 RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS  176 (334)
T ss_dssp             HHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC
T ss_pred             HhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC
Confidence            4589999999999999887765  7899999999999999999986 46778888899999999999888877665

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.69  E-value=2.5e-05  Score=61.56  Aligned_cols=69  Identities=9%  Similarity=-0.057  Sum_probs=61.6

Q ss_pred             CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKL------KPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l------~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .....+.++|.++..+|++++|+..+++++..      .|+...++.++|.++...|++++|.+.+++++.+.+.
T Consensus       249 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~  323 (366)
T d1hz4a_         249 FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR  323 (366)
T ss_dssp             GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence            34677889999999999999999999999854      4677889999999999999999999999999988765

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.61  E-value=3.9e-05  Score=53.57  Aligned_cols=50  Identities=6%  Similarity=-0.081  Sum_probs=43.6

Q ss_pred             CCCCC-HHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy17695          3 KTPFF-KVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCL   52 (222)
Q Consensus         3 ~~P~~-~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~   52 (222)
                      .+|.+ -+.+++||+.+.++|++++|..+++++|+++|++..+....-.+.
T Consensus        67 ~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~Ie  117 (124)
T d2pqrb1          67 EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVE  117 (124)
T ss_dssp             HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Confidence            35655 489999999999999999999999999999999999987765554

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.60  E-value=6.1e-05  Score=59.64  Aligned_cols=69  Identities=16%  Similarity=0.084  Sum_probs=60.3

Q ss_pred             CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHh
Q psy17695          6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDF------PDAYCNLAHCLQ-IVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~------~~a~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      +.+..+.++|.+|.++|++++|+.+|++++++.++.      ..++.++|.++. ..+++++|.+.|++++.+.+.
T Consensus        75 ~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~  150 (290)
T d1qqea_          75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ  150 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHh
Confidence            346789999999999999999999999999997665      567889998875 469999999999999988765

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.54  E-value=0.00017  Score=55.71  Aligned_cols=62  Identities=10%  Similarity=-0.044  Sum_probs=53.9

Q ss_pred             CHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q psy17695          7 FKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQI----VCDWTDYEARMKKLVS   70 (222)
Q Consensus         7 ~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~----~~~~~~a~~~~~~~~~   70 (222)
                      ||+++++||..+...|++++|+++|++|.+.  +++.+.++||.++..    ..+...+...++.+..
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~   66 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD   66 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccc
Confidence            6899999999999999999999999999775  689999999999987    5677777777766553

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=96.94  E-value=0.00099  Score=51.18  Aligned_cols=66  Identities=17%  Similarity=0.099  Sum_probs=52.0

Q ss_pred             CCCCHHHHHHHHHhccc----CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q psy17695          4 TPFFKVGILFSNSSFPS----PGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQI----VCDWTDYEARMKKLVSI   71 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l~~----~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~----~~~~~~a~~~~~~~~~~   71 (222)
                      ++.++.++++||.++..    ..++++|+..|+++.+.  +++.+.++||.++..    ..+.++|...|+++...
T Consensus       174 ~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~  247 (265)
T d1ouva_         174 DLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL  247 (265)
T ss_dssp             HTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             cccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHC
Confidence            35678888888888876    66888899999888887  468888888888875    33788888888887654

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.86  E-value=0.00085  Score=53.15  Aligned_cols=71  Identities=10%  Similarity=-0.106  Sum_probs=62.7

Q ss_pred             CCCCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q psy17695          4 TPFFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFP-DAYCNLAHCLQIVCDWTDYEARMKKLVSIVAE   74 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~-~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   74 (222)
                      .|.+...|..++.++..+|++++|...|+++++..|.+. .+|..++......++.+.|.+.|++++...|.
T Consensus        95 ~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~  166 (308)
T d2onda1          95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART  166 (308)
T ss_dssp             TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC
T ss_pred             CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            688899999999999999999999999999999999875 57889999999999999999999888765553

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.79  E-value=0.0012  Score=52.23  Aligned_cols=67  Identities=9%  Similarity=0.028  Sum_probs=33.4

Q ss_pred             CCCCHHHHHHHHHhc-ccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy17695          4 TPFFKVGILFSNSSF-PSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYEARMKKLVS   70 (222)
Q Consensus         4 ~P~~~~~~~~lg~~l-~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~   70 (222)
                      .|.....+...+... ...|+.+.|...|+++++..|+++..|..++..+...|+.+.|...|++++.
T Consensus       164 ~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~  231 (308)
T d2onda1         164 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT  231 (308)
T ss_dssp             TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            344444444444432 2334455555555555555555555555555555555555555555555443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.58  E-value=0.0064  Score=41.92  Aligned_cols=62  Identities=18%  Similarity=0.072  Sum_probs=32.6

Q ss_pred             CCHHHHHHHHHhccc----CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q psy17695          6 FFKVGILFSNSSFPS----PGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQI----VCDWTDYEARMKKLV   69 (222)
Q Consensus         6 ~~~~~~~~lg~~l~~----~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~----~~~~~~a~~~~~~~~   69 (222)
                      +++.+.++||.+|..    ..++++|+.+|+++.+.  +++.+.++||.++..    ..+.++|...|+++.
T Consensus        53 g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa  122 (133)
T d1klxa_          53 NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC  122 (133)
T ss_dssp             TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHH
Confidence            455555555555543    33455566666665543  345555555555544    234555555555543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=92.91  E-value=0.25  Score=33.27  Aligned_cols=61  Identities=18%  Similarity=-0.009  Sum_probs=48.4

Q ss_pred             CCHHHHHHHHHhcccCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q psy17695          6 FFKVGILFSNSSFPSPGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQI----VCDWTDYEARMKKLVS   70 (222)
Q Consensus         6 ~~~~~~~~lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~~l~~~~~~----~~~~~~a~~~~~~~~~   70 (222)
                      +++.+.++||.  ....+.++|+..|+++.+.  +++.+.++||.++..    ..+.++|...|+++..
T Consensus        23 g~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~   87 (133)
T d1klxa_          23 NEMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACG   87 (133)
T ss_dssp             TCTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred             CChhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhc
Confidence            45667777775  4456899999999999875  689999999999876    4568888888888764

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.39  E-value=0.4  Score=29.79  Aligned_cols=23  Identities=26%  Similarity=0.261  Sum_probs=11.2

Q ss_pred             HHHHhcccCCCcHHHHHHHHHHH
Q psy17695         13 FSNSSFPSPGNIPEAIQSYRTAL   35 (222)
Q Consensus        13 ~lg~~l~~~g~~~eA~~~~~~Al   35 (222)
                      ..+.-+...|+|+|||+|+++|.
T Consensus        13 RrAer~l~~~rydeAIech~kA~   35 (83)
T d2crba1          13 RRADRLLAAGKYEEAISCHRKAT   35 (83)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHH
Confidence            34444445555555555554443