Psyllid ID: psy17886

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MSHSHWFQMMSLSADVMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVAFKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFVIDLLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFYMLVAHWLACIWYSIGF
Secondary Structure (PSIPRED)
ccccccHHHHcccccccccccccccccccEEEEccccHHHHHHHHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHHHHHHEEEccEEEEcccEEEEcHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccHHHHEcccccccHHHcccccccccEEEEcccHHHHHHHHHHHHHHHHHHHHcccEEEEEccccccccEEHHHHHHHHHEHHHEEEEEEEEEEccccEEcccHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MSHSHWFQMMSLSADvmpqyrqeapktpphilLHYCAFKAIWDWVILCLTFYTAIMVPYnvafknktsedvSLLVVDSIVDVIFFIDIVLNFhttfvgpggevvsdpkviRMNYLKSWFVIDLlsclpydvfnafdhdedgIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFYMLVAHWLACIWYSIGF
Flexible Loop (DISEMBL)
MSHSHWFQMMSLSADVMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVAFKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFVIDLLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFYMLVAHWLACIWYSIGF
Low Complexity Region (SEG)
MSHSHWFQMMSLSADVMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVAFKNKTSEdvsllvvdsivdviffidivLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFVIDLLSCLPYDVFNAFDHDEDGIGSLFSAlkvvrllrlgrvvrklDRYLEYGAAMLILLLCFYMLVAHWLACIWYSIGF
Disordered region (IsUnstruct)
****************************PHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVAFKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFVIDLLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFYMLVAHWLACIWYSI**
Disordered Region (DISOPRED)
*****************************HILLHYCAFKAIWDWVILCLTFYTAIMVPYNVAFKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFVIDLLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFYMLVAHWLACIWYSIGF
Disordered Region (DISEMBL)
********MMSLSADVMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVAFKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFVIDLLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFYMLVAHWLACIWYSIGF
Disordered Region (DISPRO)
*****WFQMMSLSADVMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVAFKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFVIDLLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFYMLVAHWLACIWYSIGF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSHSHWFQMMSLSADVMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVAFKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFVIDLLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFYMLVAHWLACIWYSIGF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	198	2.2.26 [Sep-21-2011]
Q02280	1174	Potassium voltage-gated c	no	N/A	0.984	0.166	0.958	1e-110
Q9EPI9	988	Potassium voltage-gated c	yes	N/A	0.979	0.196	0.748	4e-88
Q920E3	988	Potassium voltage-gated c	yes	N/A	0.979	0.196	0.748	5e-88
Q8NCM2	988	Potassium voltage-gated c	yes	N/A	0.979	0.196	0.748	5e-88
Q63472	962	Potassium voltage-gated c	no	N/A	0.979	0.201	0.728	2e-85
O18965	987	Potassium voltage-gated c	no	N/A	0.984	0.197	0.636	2e-81
O95259	989	Potassium voltage-gated c	no	N/A	0.979	0.196	0.639	2e-81
Q60603	989	Potassium voltage-gated c	no	N/A	0.979	0.196	0.639	2e-81
Q9ER47	1195	Potassium voltage-gated c	no	N/A	0.954	0.158	0.5	5e-55
Q9NS40	1196	Potassium voltage-gated c	no	N/A	0.954	0.158	0.5	5e-55

>sp|Q02280|KCNAE_DROME Potassium voltage-gated channel protein eag OS=Drosophila melanogaster GN=eag PE=1 SV=2

 Score =  398 bits (1022), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 187/195 (95%), Positives = 190/195 (97%)

Query: 3   HSHWFQMMSLSADVMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVA 62
            S+   MMSLSAD+MPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVA
Sbjct: 200 QSNLAHMMSLSADIMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVA 259

Query: 63  FKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFVID 122
           FKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWF+ID
Sbjct: 260 FKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFIID 319

Query: 123 LLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFY 182
           LLSCLPYDVFNAFD DEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFY
Sbjct: 320 LLSCLPYDVFNAFDRDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFY 379

Query: 183 MLVAHWLACIWYSIG 197
           MLVAHWLACIWYSIG
Sbjct: 380 MLVAHWLACIWYSIG 394

Structural component of a potassium channel. Mediates the potassium permeability of membranes; potassium current is regulated by CaMKII and CASK. Has a role in growth of the perineurial glial layer of the larval peripheral nerve.
Drosophila melanogaster (taxid: 7227)

>sp|Q9EPI9|KCNH5_RAT Potassium voltage-gated channel subfamily H member 5 OS=Rattus norvegicus GN=Kcnh5 PE=2 SV=1

 Score =  323 bits (828), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 146/195 (74%), Positives = 175/195 (89%), Gaps = 1/195 (0%)

Query: 3   HSHWFQMMSLSADVMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVA 62
           HS   +++ L +D++PQY+QEAPKTPPHI+LHYCAFK  WDWVIL LTFYTAIMVPYNV+
Sbjct: 178 HSRLAEVLQLGSDILPQYKQEAPKTPPHIILHYCAFKTTWDWVILILTFYTAIMVPYNVS 237

Query: 63  FKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFVID 122
           FK K + +++ LV+DS+VDVIF +DIVLNFHTTFVGPGGEV+SDPK+IRMNYLK+WFVID
Sbjct: 238 FKTKQN-NIAWLVLDSVVDVIFLVDIVLNFHTTFVGPGGEVISDPKLIRMNYLKTWFVID 296

Query: 123 LLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFY 182
           LLSCLPYD+ NAF++ ++GI SLFS+LKVVRLLRLGRV RKLD YLEYGAA+L+LL+C +
Sbjct: 297 LLSCLPYDIINAFENVDEGISSLFSSLKVVRLLRLGRVARKLDHYLEYGAAVLVLLVCVF 356

Query: 183 MLVAHWLACIWYSIG 197
            LVAHWLACIWYSIG
Sbjct: 357 GLVAHWLACIWYSIG 371

Pore-forming (alpha) subunit of voltage-gated potassium channel. Elicits a non-inactivating outward rectifying current. Channel properties may be modulated by cAMP and subunit assembly.

Rattus norvegicus (taxid: 10116)

>sp|Q920E3|KCNH5_MOUSE Potassium voltage-gated channel subfamily H member 5 OS=Mus musculus GN=Kcnh5 PE=2 SV=3

 Score =  323 bits (828), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 146/195 (74%), Positives = 175/195 (89%), Gaps = 1/195 (0%)

Query: 3   HSHWFQMMSLSADVMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVA 62
           HS   +++ L +D++PQY+QEAPKTPPHI+LHYCAFK  WDWVIL LTFYTAIMVPYNV+
Sbjct: 178 HSRLAEVLQLGSDILPQYKQEAPKTPPHIILHYCAFKTTWDWVILILTFYTAIMVPYNVS 237

Query: 63  FKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFVID 122
           FK K + +++ LV+DS+VDVIF +DIVLNFHTTFVGPGGEV+SDPK+IRMNYLK+WFVID
Sbjct: 238 FKTKQN-NIAWLVLDSVVDVIFLVDIVLNFHTTFVGPGGEVISDPKLIRMNYLKTWFVID 296

Query: 123 LLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFY 182
           LLSCLPYD+ NAF++ ++GI SLFS+LKVVRLLRLGRV RKLD YLEYGAA+L+LL+C +
Sbjct: 297 LLSCLPYDIINAFENVDEGISSLFSSLKVVRLLRLGRVARKLDHYLEYGAAVLVLLVCVF 356

Query: 183 MLVAHWLACIWYSIG 197
            LVAHWLACIWYSIG
Sbjct: 357 GLVAHWLACIWYSIG 371

Pore-forming (alpha) subunit of voltage-gated potassium channel. Elicits a non-inactivating outward rectifying current (By similarity). Channel properties may be modulated by cAMP and subunit assembly.

Mus musculus (taxid: 10090)

>sp|Q8NCM2|KCNH5_HUMAN Potassium voltage-gated channel subfamily H member 5 OS=Homo sapiens GN=KCNH5 PE=1 SV=3

 Score =  323 bits (828), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 146/195 (74%), Positives = 175/195 (89%), Gaps = 1/195 (0%)

Query: 3   HSHWFQMMSLSADVMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVA 62
           HS   +++ L +D++PQY+QEAPKTPPHI+LHYCAFK  WDWVIL LTFYTAIMVPYNV+
Sbjct: 178 HSRLAEVLQLGSDILPQYKQEAPKTPPHIILHYCAFKTTWDWVILILTFYTAIMVPYNVS 237

Query: 63  FKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFVID 122
           FK K + +++ LV+DS+VDVIF +DIVLNFHTTFVGPGGEV+SDPK+IRMNYLK+WFVID
Sbjct: 238 FKTKQN-NIAWLVLDSVVDVIFLVDIVLNFHTTFVGPGGEVISDPKLIRMNYLKTWFVID 296

Query: 123 LLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFY 182
           LLSCLPYD+ NAF++ ++GI SLFS+LKVVRLLRLGRV RKLD YLEYGAA+L+LL+C +
Sbjct: 297 LLSCLPYDIINAFENVDEGISSLFSSLKVVRLLRLGRVARKLDHYLEYGAAVLVLLVCVF 356

Query: 183 MLVAHWLACIWYSIG 197
            LVAHWLACIWYSIG
Sbjct: 357 GLVAHWLACIWYSIG 371

Pore-forming (alpha) subunit of voltage-gated potassium channel. Elicits a non-inactivating outward rectifying current. Channel properties may be modulated by cAMP and subunit assembly.

Homo sapiens (taxid: 9606)

>sp|Q63472|KCNH1_RAT Potassium voltage-gated channel subfamily H member 1 OS=Rattus norvegicus GN=Kcnh1 PE=1 SV=1

 Score =  315 bits (806), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 142/195 (72%), Positives = 172/195 (88%), Gaps = 1/195 (0%)

Query: 3   HSHWFQMMSLSADVMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVA 62
           HS   +++ L +D++PQY+QEAPKTPPHI+LHYC FK  WDW+IL LTFYTAI+VPYNV+
Sbjct: 181 HSRLAEVLQLGSDILPQYKQEAPKTPPHIILHYCVFKTTWDWIILILTFYTAILVPYNVS 240

Query: 63  FKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFVID 122
           FK + + +V+ LVVDSIVDVIF +DIVLNFHTTFVGP GEV+SDPK+IRMNYLK+WFVID
Sbjct: 241 FKTRQN-NVAWLVVDSIVDVIFLVDIVLNFHTTFVGPAGEVISDPKLIRMNYLKTWFVID 299

Query: 123 LLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFY 182
           LLSCLPYDV NAF++ ++GI SLFS+LKVVRLLRLGRV RKLD Y+EYGAA+L+LL+C +
Sbjct: 300 LLSCLPYDVINAFENVDEGISSLFSSLKVVRLLRLGRVARKLDHYIEYGAAVLVLLVCVF 359

Query: 183 MLVAHWLACIWYSIG 197
            L AHW+ACIWYSIG
Sbjct: 360 GLAAHWMACIWYSIG 374

Pore-forming (alpha) subunit of voltage-gated non-inactivating delayed rectifier potassium channel. Channel properties may be modulated by cAMP and subunit assembly. Mediates IK(NI) current in myoblasts.

Rattus norvegicus (taxid: 10116)

>sp|O18965|KCNH1_BOVIN Potassium voltage-gated channel subfamily H member 1 OS=Bos taurus GN=KCNH1 PE=2 SV=2

 Score =  301 bits (770), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 142/223 (63%), Positives = 171/223 (76%), Gaps = 28/223 (12%)

Query: 2   SHSHWFQMMSLSADVMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNV 61
            HS   +++ L +D++PQY+QEAPKTPPHI+LHYC FK  WDW+IL LTFYTAI+VPYNV
Sbjct: 180 KHSRLAEVLQLGSDILPQYKQEAPKTPPHIILHYCVFKTTWDWIILILTFYTAILVPYNV 239

Query: 62  AFKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFVI 121
           +FK + + +V+ LVVDSIVDVIF +DIVLNFHTTFVGP GEV+SDPK+IRMNYLK+WFVI
Sbjct: 240 SFKTRQN-NVAWLVVDSIVDVIFLVDIVLNFHTTFVGPAGEVISDPKLIRMNYLKTWFVI 298

Query: 122 DLLSCLPYDVFNAFDH---------------------------DEDGIGSLFSALKVVRL 154
           DLLSCLPYDV NAF++                           +  GI SLFS+LKVVRL
Sbjct: 299 DLLSCLPYDVINAFENVDEVSAFMGDPGKIGFADQIPPPLEGRESQGISSLFSSLKVVRL 358

Query: 155 LRLGRVVRKLDRYLEYGAAMLILLLCFYMLVAHWLACIWYSIG 197
           LRLGRV RKLD Y+EYGAA+L+LL+C + L AHW+ACIWYSIG
Sbjct: 359 LRLGRVARKLDHYIEYGAAVLVLLVCVFGLAAHWMACIWYSIG 401

Pore-forming (alpha) subunit of voltage-gated non-inactivating delayed rectifier potassium channel. Channel properties may be modulated by cAMP and subunit assembly. Mediates IK(NI) current in myoblasts.

Bos taurus (taxid: 9913)

>sp|O95259|KCNH1_HUMAN Potassium voltage-gated channel subfamily H member 1 OS=Homo sapiens GN=KCNH1 PE=1 SV=1

 Score =  301 bits (770), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 142/222 (63%), Positives = 171/222 (77%), Gaps = 28/222 (12%)

Query: 3   HSHWFQMMSLSADVMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVA 62
           HS   +++ L +D++PQY+QEAPKTPPHI+LHYC FK  WDW+IL LTFYTAI+VPYNV+
Sbjct: 181 HSRLAEVLQLGSDILPQYKQEAPKTPPHIILHYCVFKTTWDWIILILTFYTAILVPYNVS 240

Query: 63  FKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFVID 122
           FK + + +V+ LVVDSIVDVIF +DIVLNFHTTFVGP GEV+SDPK+IRMNYLK+WFVID
Sbjct: 241 FKTRQN-NVAWLVVDSIVDVIFLVDIVLNFHTTFVGPAGEVISDPKLIRMNYLKTWFVID 299

Query: 123 LLSCLPYDVFNAFDH---------------------------DEDGIGSLFSALKVVRLL 155
           LLSCLPYDV NAF++                           +  GI SLFS+LKVVRLL
Sbjct: 300 LLSCLPYDVINAFENVDEVSAFMGDPGKIGFADQIPPPLEGRESQGISSLFSSLKVVRLL 359

Query: 156 RLGRVVRKLDRYLEYGAAMLILLLCFYMLVAHWLACIWYSIG 197
           RLGRV RKLD Y+EYGAA+L+LL+C + L AHW+ACIWYSIG
Sbjct: 360 RLGRVARKLDHYIEYGAAVLVLLVCVFGLAAHWMACIWYSIG 401

Pore-forming (alpha) subunit of voltage-gated non-inactivating delayed rectifier potassium channel. Channel properties may be modulated by cAMP and subunit assembly. Mediates IK(NI) current in myoblasts.

Homo sapiens (taxid: 9606)

>sp|Q60603|KCNH1_MOUSE Potassium voltage-gated channel subfamily H member 1 OS=Mus musculus GN=Kcnh1 PE=1 SV=1

 Score =  301 bits (770), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 142/222 (63%), Positives = 171/222 (77%), Gaps = 28/222 (12%)

Query: 3   HSHWFQMMSLSADVMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVA 62
           HS   +++ L +D++PQY+QEAPKTPPHI+LHYC FK  WDW+IL LTFYTAI+VPYNV+
Sbjct: 181 HSRLAEVLQLGSDILPQYKQEAPKTPPHIILHYCVFKTTWDWIILILTFYTAILVPYNVS 240

Query: 63  FKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFVID 122
           FK + + +V+ LVVDSIVDVIF +DIVLNFHTTFVGP GEV+SDPK+IRMNYLK+WFVID
Sbjct: 241 FKTRQN-NVAWLVVDSIVDVIFLVDIVLNFHTTFVGPAGEVISDPKLIRMNYLKTWFVID 299

Query: 123 LLSCLPYDVFNAFDH---------------------------DEDGIGSLFSALKVVRLL 155
           LLSCLPYDV NAF++                           +  GI SLFS+LKVVRLL
Sbjct: 300 LLSCLPYDVINAFENVDEVSAFMGDPGKIGFADQIPPPLEGRESQGISSLFSSLKVVRLL 359

Query: 156 RLGRVVRKLDRYLEYGAAMLILLLCFYMLVAHWLACIWYSIG 197
           RLGRV RKLD Y+EYGAA+L+LL+C + L AHW+ACIWYSIG
Sbjct: 360 RLGRVARKLDHYIEYGAAVLVLLVCVFGLAAHWMACIWYSIG 401

Pore-forming (alpha) subunit of voltage-gated non-inactivating delayed rectifier potassium channel. Channel properties may be modulated by cAMP and subunit assembly. Mediates IK(NI) current in myoblasts.

Mus musculus (taxid: 10090)

>sp|Q9ER47|KCNH7_MOUSE Potassium voltage-gated channel subfamily H member 7 OS=Mus musculus GN=Kcnh7 PE=2 SV=2

 Score =  213 bits (543), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 100/200 (50%), Positives = 133/200 (66%), Gaps = 11/200 (5%)

Query: 8   QMMSLSADVMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVAFKNKT 67
           Q++SL ADV+P+Y+ + P+     +LHY  FKA+WDW+IL L  YTAI  PY+ AF    
Sbjct: 376 QVLSLGADVLPEYKLQTPRINKFTILHYSPFKAVWDWLILLLVIYTAIFTPYSAAFLLND 435

Query: 68  SEDVS----------LLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKS 117
            E+            L VVD IVD++F IDI++NF TT+V    EVVSDP  I ++Y K 
Sbjct: 436 REEQKRRECGYSCSPLNVVDLIVDIMFIIDILINFRTTYVNQNEEVVSDPAKIAIHYFKG 495

Query: 118 WFVIDLLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLIL 177
           WF+ID+++ +P+D+   F    D   +L   LK  RLLRL RV RKLDRY EYGAA+L+L
Sbjct: 496 WFLIDMVAAIPFDLL-IFGSGSDETTTLIGLLKTARLLRLVRVARKLDRYSEYGAAVLML 554

Query: 178 LLCFYMLVAHWLACIWYSIG 197
           L+C + L+AHWLACIWY+IG
Sbjct: 555 LMCIFALIAHWLACIWYAIG 574

Pore-forming (alpha) subunit of voltage-gated potassium channel (By similarity). Channel properties may be modulated by cAMP and subunit assembly.

Mus musculus (taxid: 10090)

>sp|Q9NS40|KCNH7_HUMAN Potassium voltage-gated channel subfamily H member 7 OS=Homo sapiens GN=KCNH7 PE=2 SV=2

 Score =  213 bits (543), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 100/200 (50%), Positives = 133/200 (66%), Gaps = 11/200 (5%)

Query: 8   QMMSLSADVMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVAFKNKT 67
           Q++SL ADV+P+Y+ + P+     +LHY  FKA+WDW+IL L  YTAI  PY+ AF    
Sbjct: 376 QVLSLGADVLPEYKLQTPRINKFTILHYSPFKAVWDWLILLLVIYTAIFTPYSAAFLLND 435

Query: 68  SEDVS----------LLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKS 117
            E+            L VVD IVD++F IDI++NF TT+V    EVVSDP  I ++Y K 
Sbjct: 436 REEQKRRECGYSCSPLNVVDLIVDIMFIIDILINFRTTYVNQNEEVVSDPAKIAIHYFKG 495

Query: 118 WFVIDLLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLIL 177
           WF+ID+++ +P+D+   F    D   +L   LK  RLLRL RV RKLDRY EYGAA+L+L
Sbjct: 496 WFLIDMVAAIPFDLL-IFGSGSDETTTLIGLLKTARLLRLVRVARKLDRYSEYGAAVLML 554

Query: 178 LLCFYMLVAHWLACIWYSIG 197
           L+C + L+AHWLACIWY+IG
Sbjct: 555 LMCIFALIAHWLACIWYAIG 574

Pore-forming (alpha) subunit of voltage-gated potassium channel. Channel properties may be modulated by cAMP and subunit assembly.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
380015842	1120	PREDICTED: potassium voltage-gated chann	0.984	0.174	0.958	1e-113
354721142	1121	potassium voltage-gated channel protein	0.984	0.173	0.958	1e-113
242010493	1150	voltage-gated channel, putative [Pedicul	0.984	0.169	0.948	1e-112
442616380	1254	ether a go-go, isoform G [Drosophila mel	0.984	0.155	0.958	1e-112
320542083	1268	ether a go-go, isoform D [Drosophila mel	0.984	0.153	0.958	1e-112
198471179	1266	GA23028 [Drosophila pseudoobscura pseudo	0.984	0.154	0.958	1e-112
195478693	1269	GE17158 [Drosophila yakuba] gi|194188140	0.984	0.153	0.958	1e-112
195432719	1267	GK20120 [Drosophila willistoni] gi|19416	0.984	0.153	0.958	1e-112
195354621	1257	GM12050 [Drosophila sechellia] gi|194129	0.984	0.155	0.958	1e-112
116007160	1270	ether a go-go, isoform B [Drosophila mel	0.984	0.153	0.958	1e-112

>gi|380015842|ref|XP_003691903.1| PREDICTED: potassium voltage-gated channel protein eag-like [Apis florea]

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 187/195 (95%), Positives = 190/195 (97%)

Query: 3   HSHWFQMMSLSADVMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVA 62
            SH   MMSLS DVMPQYRQEAPKTPPHILLHYCAFKAIWDW+ILCLTFYTAIMVPYNVA
Sbjct: 189 QSHLAHMMSLSGDVMPQYRQEAPKTPPHILLHYCAFKAIWDWIILCLTFYTAIMVPYNVA 248

Query: 63  FKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFVID 122
           FKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWF+ID
Sbjct: 249 FKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFIID 308

Query: 123 LLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFY 182
           LLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFY
Sbjct: 309 LLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFY 368

Query: 183 MLVAHWLACIWYSIG 197
           MLVAHWLAC+WYSIG
Sbjct: 369 MLVAHWLACVWYSIG 383

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|354721142|ref|NP_001238948.1| potassium voltage-gated channel protein eag-like [Apis mellifera]

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 187/195 (95%), Positives = 190/195 (97%)

Query: 3   HSHWFQMMSLSADVMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVA 62
            SH   MMSLS DVMPQYRQEAPKTPPHILLHYCAFKAIWDW+ILCLTFYTAIMVPYNVA
Sbjct: 189 QSHLAHMMSLSGDVMPQYRQEAPKTPPHILLHYCAFKAIWDWIILCLTFYTAIMVPYNVA 248

Query: 63  FKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFVID 122
           FKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWF+ID
Sbjct: 249 FKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFIID 308

Query: 123 LLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFY 182
           LLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFY
Sbjct: 309 LLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFY 368

Query: 183 MLVAHWLACIWYSIG 197
           MLVAHWLAC+WYSIG
Sbjct: 369 MLVAHWLACVWYSIG 383

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242010493|ref|XP_002426002.1| voltage-gated channel, putative [Pediculus humanus corporis] gi|212509993|gb|EEB13264.1| voltage-gated channel, putative [Pediculus humanus corporis]

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 185/195 (94%), Positives = 189/195 (96%)

Query: 3   HSHWFQMMSLSADVMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVA 62
            SH   MMSL+ADVMPQYRQEAPKTPPHILLHYCAFKAIWDW+ILCLTFYTAIMVPYNVA
Sbjct: 184 QSHLAHMMSLNADVMPQYRQEAPKTPPHILLHYCAFKAIWDWIILCLTFYTAIMVPYNVA 243

Query: 63  FKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFVID 122
           FKNKTSEDVSLLV+DSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIR NY KSWF+ID
Sbjct: 244 FKNKTSEDVSLLVIDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRTNYFKSWFIID 303

Query: 123 LLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFY 182
           LLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFY
Sbjct: 304 LLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFY 363

Query: 183 MLVAHWLACIWYSIG 197
           MLVAHWLACIWYSIG
Sbjct: 364 MLVAHWLACIWYSIG 378

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442616380|ref|NP_001259558.1| ether a go-go, isoform G [Drosophila melanogaster] gi|440216780|gb|AGB95400.1| ether a go-go, isoform G [Drosophila melanogaster]

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 187/195 (95%), Positives = 190/195 (97%)

Query: 3   HSHWFQMMSLSADVMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVA 62
            S+   MMSLSAD+MPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVA
Sbjct: 183 QSNLAHMMSLSADIMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVA 242

Query: 63  FKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFVID 122
           FKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWF+ID
Sbjct: 243 FKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFIID 302

Query: 123 LLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFY 182
           LLSCLPYDVFNAFD DEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFY
Sbjct: 303 LLSCLPYDVFNAFDRDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFY 362

Query: 183 MLVAHWLACIWYSIG 197
           MLVAHWLACIWYSIG
Sbjct: 363 MLVAHWLACIWYSIG 377

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|320542083|ref|NP_001188592.1| ether a go-go, isoform D [Drosophila melanogaster] gi|318069380|gb|ADV37674.1| ether a go-go, isoform D [Drosophila melanogaster]

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 187/195 (95%), Positives = 190/195 (97%)

Query: 3   HSHWFQMMSLSADVMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVA 62
            S+   MMSLSAD+MPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVA
Sbjct: 198 QSNLAHMMSLSADIMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVA 257

Query: 63  FKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFVID 122
           FKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWF+ID
Sbjct: 258 FKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFIID 317

Query: 123 LLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFY 182
           LLSCLPYDVFNAFD DEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFY
Sbjct: 318 LLSCLPYDVFNAFDRDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFY 377

Query: 183 MLVAHWLACIWYSIG 197
           MLVAHWLACIWYSIG
Sbjct: 378 MLVAHWLACIWYSIG 392

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198471179|ref|XP_002133679.1| GA23028 [Drosophila pseudoobscura pseudoobscura] gi|198145802|gb|EDY72306.1| GA23028 [Drosophila pseudoobscura pseudoobscura]

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 187/195 (95%), Positives = 190/195 (97%)

Query: 3   HSHWFQMMSLSADVMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVA 62
            S+   MMSLSAD+MPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVA
Sbjct: 196 QSNLAHMMSLSADIMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVA 255

Query: 63  FKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFVID 122
           FKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWF+ID
Sbjct: 256 FKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFIID 315

Query: 123 LLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFY 182
           LLSCLPYDVFNAFD DEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFY
Sbjct: 316 LLSCLPYDVFNAFDRDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFY 375

Query: 183 MLVAHWLACIWYSIG 197
           MLVAHWLACIWYSIG
Sbjct: 376 MLVAHWLACIWYSIG 390

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195478693|ref|XP_002100616.1| GE17158 [Drosophila yakuba] gi|194188140|gb|EDX01724.1| GE17158 [Drosophila yakuba]

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 187/195 (95%), Positives = 190/195 (97%)

Query: 3   HSHWFQMMSLSADVMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVA 62
            S+   MMSLSAD+MPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVA
Sbjct: 198 QSNLAHMMSLSADIMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVA 257

Query: 63  FKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFVID 122
           FKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWF+ID
Sbjct: 258 FKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFIID 317

Query: 123 LLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFY 182
           LLSCLPYDVFNAFD DEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFY
Sbjct: 318 LLSCLPYDVFNAFDRDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFY 377

Query: 183 MLVAHWLACIWYSIG 197
           MLVAHWLACIWYSIG
Sbjct: 378 MLVAHWLACIWYSIG 392

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195432719|ref|XP_002064364.1| GK20120 [Drosophila willistoni] gi|194160449|gb|EDW75350.1| GK20120 [Drosophila willistoni]

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 187/195 (95%), Positives = 190/195 (97%)

Query: 3   HSHWFQMMSLSADVMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVA 62
            S+   MMSLSAD+MPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVA
Sbjct: 200 QSNLAHMMSLSADIMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVA 259

Query: 63  FKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFVID 122
           FKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWF+ID
Sbjct: 260 FKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFIID 319

Query: 123 LLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFY 182
           LLSCLPYDVFNAFD DEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFY
Sbjct: 320 LLSCLPYDVFNAFDRDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFY 379

Query: 183 MLVAHWLACIWYSIG 197
           MLVAHWLACIWYSIG
Sbjct: 380 MLVAHWLACIWYSIG 394

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195354621|ref|XP_002043795.1| GM12050 [Drosophila sechellia] gi|194129021|gb|EDW51064.1| GM12050 [Drosophila sechellia]

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 187/195 (95%), Positives = 190/195 (97%)

Query: 3   HSHWFQMMSLSADVMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVA 62
            S+   MMSLSAD+MPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVA
Sbjct: 198 QSNLAHMMSLSADIMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVA 257

Query: 63  FKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFVID 122
           FKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWF+ID
Sbjct: 258 FKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFIID 317

Query: 123 LLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFY 182
           LLSCLPYDVFNAFD DEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFY
Sbjct: 318 LLSCLPYDVFNAFDRDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFY 377

Query: 183 MLVAHWLACIWYSIG 197
           MLVAHWLACIWYSIG
Sbjct: 378 MLVAHWLACIWYSIG 392

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|116007160|ref|NP_001036275.1| ether a go-go, isoform B [Drosophila melanogaster] gi|113193606|gb|ABI30980.1| ether a go-go, isoform B [Drosophila melanogaster]

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 187/195 (95%), Positives = 190/195 (97%)

Query: 3   HSHWFQMMSLSADVMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVA 62
            S+   MMSLSAD+MPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVA
Sbjct: 200 QSNLAHMMSLSADIMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVA 259

Query: 63  FKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFVID 122
           FKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWF+ID
Sbjct: 260 FKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFIID 319

Query: 123 LLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFY 182
           LLSCLPYDVFNAFD DEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFY
Sbjct: 320 LLSCLPYDVFNAFDRDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFY 379

Query: 183 MLVAHWLACIWYSIG 197
           MLVAHWLACIWYSIG
Sbjct: 380 MLVAHWLACIWYSIG 394

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
FB|FBgn0000535	1174	eag "ether a go-go" [Drosophil	0.979	0.165	0.778	1.6e-78
UNIPROTKB|J9NRR1	880	KCNH5 "Uncharacterized protein	0.979	0.220	0.610	3.7e-64
UNIPROTKB|J9P9I3	861	KCNH5 "Uncharacterized protein	0.979	0.225	0.610	3.7e-64
UNIPROTKB|Q86XI1	422	KCNH5 "Potassium voltage-gated	0.979	0.459	0.610	3.7e-64
UNIPROTKB|F1MP51	988	KCNH5 "Uncharacterized protein	0.979	0.196	0.610	1.1e-63
UNIPROTKB|Q8NCM2	988	KCNH5 "Potassium voltage-gated	0.979	0.196	0.610	1.1e-63
MGI|MGI:3584508	988	Kcnh5 "potassium voltage-gated	0.979	0.196	0.610	1.1e-63
RGD|621417	988	Kcnh5 "potassium voltage-gated	0.979	0.196	0.610	1.1e-63
UNIPROTKB|E1BXK7	989	KCNH5 "Uncharacterized protein	0.979	0.196	0.610	1.1e-63
ZFIN|ZDB-GENE-121128-4	956	kcnh1b "potassium voltage-gate	0.989	0.205	0.583	5e-62

FB|FBgn0000535 eag "ether a go-go" [Drosophila melanogaster (taxid:7227)]

 Score = 794 (284.6 bits), Expect = 1.6e-78, P = 1.6e-78
 Identities = 151/194 (77%), Positives = 154/194 (79%)

Query:     4 SHWFQMMSLSADVMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVAF 63
             S+   MMSLSAD+MPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVAF
Sbjct:   201 SNLAHMMSLSADIMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVAF 260

Query:    64 KNKTSEXXXXXXXXXXXXXXXXXXXXLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFVIDL 123
             KNKTSE                    LNFHTTFVGPGGEVVSDPKVIRMNYLKSWF+IDL
Sbjct:   261 KNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFIIDL 320

Query:   124 LSCLPYDVFNAFDHDEDGIGSLFSAXXXXXXXXXXXXXXXXDRYLEYGAAMLILLLCFYM 183
             LSCLPYDVFNAFD DEDGIGSLFSA                DRYLEYGAAMLILLLCFYM
Sbjct:   321 LSCLPYDVFNAFDRDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFYM 380

Query:   184 LVAHWLACIWYSIG 197
             LVAHWLACIWYSIG
Sbjct:   381 LVAHWLACIWYSIG 394

GO:0007629 "flight behavior" evidence=IMP

GO:0005249 "voltage-gated potassium channel activity" evidence=IDA;TAS

GO:0008076 "voltage-gated potassium channel complex" evidence=ISS;TAS;IPI

GO:0051259 "protein oligomerization" evidence=IPI

GO:0006813 "potassium ion transport" evidence=IDA;TAS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0007619 "courtship behavior" evidence=NAS;TAS

GO:0042066 "perineurial glial growth" evidence=IGI

GO:0008016 "regulation of heart contraction" evidence=NAS

GO:0048150 "behavioral response to ether" evidence=NAS

GO:0007608 "sensory perception of smell" evidence=NAS

GO:0007611 "learning or memory" evidence=NAS

GO:0022843 "voltage-gated cation channel activity" evidence=IDA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0007612 "learning" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|J9NRR1 KCNH5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
 Identities = 119/195 (61%), Positives = 142/195 (72%)

Query:     3 HSHWFQMMSLSADVMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVA 62
             HS   +++ L +D++PQY+QEAPKTPPHI+LHYCAFK  WDWVIL LTFYTAIMVPYNV+
Sbjct:    70 HSRLAEVLQLGSDILPQYKQEAPKTPPHIILHYCAFKTTWDWVILILTFYTAIMVPYNVS 129

Query:    63 FKNKTSEXXXXXXXXXXXXXXXXXXXXLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFVID 122
             FK K +                     LNFHTTFVGPGGEV+SDPK+IRMNYLK+WFVID
Sbjct:   130 FKTKQNNIAWLVLDSVVDVIFLVDIV-LNFHTTFVGPGGEVISDPKLIRMNYLKTWFVID 188

Query:   123 LLSCLPYDVFNAFDHDEDGIGSLFSAXXXXXXXXXXXXXXXXDRYLEYGAAMLILLLCFY 182
             LLSCLPYD+ NAF++ ++GI SLFS+                D YLEYGAA+L+LL+C +
Sbjct:   189 LLSCLPYDIINAFENVDEGISSLFSSLKVVRLLRLGRVARKLDHYLEYGAAVLVLLVCVF 248

Query:   183 MLVAHWLACIWYSIG 197
              LVAHWLACIWYSIG
Sbjct:   249 GLVAHWLACIWYSIG 263

GO:0016021 "integral to membrane" evidence=IEA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA

UNIPROTKB|J9P9I3 KCNH5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
 Identities = 119/195 (61%), Positives = 142/195 (72%)

Query:     3 HSHWFQMMSLSADVMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVA 62
             HS   +++ L +D++PQY+QEAPKTPPHI+LHYCAFK  WDWVIL LTFYTAIMVPYNV+
Sbjct:    70 HSRLAEVLQLGSDILPQYKQEAPKTPPHIILHYCAFKTTWDWVILILTFYTAIMVPYNVS 129

Query:    63 FKNKTSEXXXXXXXXXXXXXXXXXXXXLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFVID 122
             FK K +                     LNFHTTFVGPGGEV+SDPK+IRMNYLK+WFVID
Sbjct:   130 FKTKQNNIAWLVLDSVVDVIFLVDIV-LNFHTTFVGPGGEVISDPKLIRMNYLKTWFVID 188

Query:   123 LLSCLPYDVFNAFDHDEDGIGSLFSAXXXXXXXXXXXXXXXXDRYLEYGAAMLILLLCFY 182
             LLSCLPYD+ NAF++ ++GI SLFS+                D YLEYGAA+L+LL+C +
Sbjct:   189 LLSCLPYDIINAFENVDEGISSLFSSLKVVRLLRLGRVARKLDHYLEYGAAVLVLLVCVF 248

Query:   183 MLVAHWLACIWYSIG 197
              LVAHWLACIWYSIG
Sbjct:   249 GLVAHWLACIWYSIG 263

GO:0016021 "integral to membrane" evidence=IEA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA

UNIPROTKB|Q86XI1 KCNH5 "Potassium voltage-gated channel subfamily H member 5" [Homo sapiens (taxid:9606)]

 Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
 Identities = 119/195 (61%), Positives = 142/195 (72%)

Query:     3 HSHWFQMMSLSADVMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVA 62
             HS   +++ L +D++PQY+QEAPKTPPHI+LHYCAFK  WDWVIL LTFYTAIMVPYNV+
Sbjct:   120 HSRLAEVLQLGSDILPQYKQEAPKTPPHIILHYCAFKTTWDWVILILTFYTAIMVPYNVS 179

Query:    63 FKNKTSEXXXXXXXXXXXXXXXXXXXXLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFVID 122
             FK K +                     LNFHTTFVGPGGEV+SDPK+IRMNYLK+WFVID
Sbjct:   180 FKTKQNNIAWLVLDSVVDVIFLVDIV-LNFHTTFVGPGGEVISDPKLIRMNYLKTWFVID 238

Query:   123 LLSCLPYDVFNAFDHDEDGIGSLFSAXXXXXXXXXXXXXXXXDRYLEYGAAMLILLLCFY 182
             LLSCLPYD+ NAF++ ++GI SLFS+                D YLEYGAA+L+LL+C +
Sbjct:   239 LLSCLPYDIINAFENVDEGISSLFSSLKVVRLLRLGRVARKLDHYLEYGAAVLVLLVCVF 298

Query:   183 MLVAHWLACIWYSIG 197
              LVAHWLACIWYSIG
Sbjct:   299 GLVAHWLACIWYSIG 313

GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1MP51 KCNH5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 654 (235.3 bits), Expect = 1.1e-63, P = 1.1e-63
 Identities = 119/195 (61%), Positives = 142/195 (72%)

Query:     3 HSHWFQMMSLSADVMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVA 62
             HS   +++ L +D++PQY+QEAPKTPPHI+LHYCAFK  WDWVIL LTFYTAIMVPYNV+
Sbjct:   178 HSRLAEVLQLGSDILPQYKQEAPKTPPHIILHYCAFKTTWDWVILILTFYTAIMVPYNVS 237

Query:    63 FKNKTSEXXXXXXXXXXXXXXXXXXXXLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFVID 122
             FK K +                     LNFHTTFVGPGGEV+SDPK+IRMNYLK+WFVID
Sbjct:   238 FKTKQNNIAWLVLDSVVDVIFLVDIV-LNFHTTFVGPGGEVISDPKLIRMNYLKTWFVID 296

Query:   123 LLSCLPYDVFNAFDHDEDGIGSLFSAXXXXXXXXXXXXXXXXDRYLEYGAAMLILLLCFY 182
             LLSCLPYD+ NAF++ ++GI SLFS+                D YLEYGAA+L+LL+C +
Sbjct:   297 LLSCLPYDIINAFENVDEGISSLFSSLKVVRLLRLGRVARKLDHYLEYGAAVLVLLVCVF 356

Query:   183 MLVAHWLACIWYSIG 197
              LVAHWLACIWYSIG
Sbjct:   357 GLVAHWLACIWYSIG 371

GO:0016021 "integral to membrane" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA

UNIPROTKB|Q8NCM2 KCNH5 "Potassium voltage-gated channel subfamily H member 5" [Homo sapiens (taxid:9606)]

 Score = 654 (235.3 bits), Expect = 1.1e-63, P = 1.1e-63
 Identities = 119/195 (61%), Positives = 142/195 (72%)

Query:     3 HSHWFQMMSLSADVMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVA 62
             HS   +++ L +D++PQY+QEAPKTPPHI+LHYCAFK  WDWVIL LTFYTAIMVPYNV+
Sbjct:   178 HSRLAEVLQLGSDILPQYKQEAPKTPPHIILHYCAFKTTWDWVILILTFYTAIMVPYNVS 237

Query:    63 FKNKTSEXXXXXXXXXXXXXXXXXXXXLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFVID 122
             FK K +                     LNFHTTFVGPGGEV+SDPK+IRMNYLK+WFVID
Sbjct:   238 FKTKQNNIAWLVLDSVVDVIFLVDIV-LNFHTTFVGPGGEVISDPKLIRMNYLKTWFVID 296

Query:   123 LLSCLPYDVFNAFDHDEDGIGSLFSAXXXXXXXXXXXXXXXXDRYLEYGAAMLILLLCFY 182
             LLSCLPYD+ NAF++ ++GI SLFS+                D YLEYGAA+L+LL+C +
Sbjct:   297 LLSCLPYDIINAFENVDEGISSLFSSLKVVRLLRLGRVARKLDHYLEYGAAVLVLLVCVF 356

Query:   183 MLVAHWLACIWYSIG 197
              LVAHWLACIWYSIG
Sbjct:   357 GLVAHWLACIWYSIG 371

GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005622 "intracellular" evidence=IDA

GO:0009986 "cell surface" evidence=IDA

GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=IDA

GO:0005886 "plasma membrane" evidence=TAS

GO:0007268 "synaptic transmission" evidence=TAS

MGI|MGI:3584508 Kcnh5 "potassium voltage-gated channel, subfamily H (eag-related), member 5" [Mus musculus (taxid:10090)]

 Score = 654 (235.3 bits), Expect = 1.1e-63, P = 1.1e-63
 Identities = 119/195 (61%), Positives = 142/195 (72%)

Query:     3 HSHWFQMMSLSADVMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVA 62
             HS   +++ L +D++PQY+QEAPKTPPHI+LHYCAFK  WDWVIL LTFYTAIMVPYNV+
Sbjct:   178 HSRLAEVLQLGSDILPQYKQEAPKTPPHIILHYCAFKTTWDWVILILTFYTAIMVPYNVS 237

Query:    63 FKNKTSEXXXXXXXXXXXXXXXXXXXXLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFVID 122
             FK K +                     LNFHTTFVGPGGEV+SDPK+IRMNYLK+WFVID
Sbjct:   238 FKTKQNNIAWLVLDSVVDVIFLVDIV-LNFHTTFVGPGGEVISDPKLIRMNYLKTWFVID 296

Query:   123 LLSCLPYDVFNAFDHDEDGIGSLFSAXXXXXXXXXXXXXXXXDRYLEYGAAMLILLLCFY 182
             LLSCLPYD+ NAF++ ++GI SLFS+                D YLEYGAA+L+LL+C +
Sbjct:   297 LLSCLPYDIINAFENVDEGISSLFSSLKVVRLLRLGRVARKLDHYLEYGAAVLVLLVCVF 356

Query:   183 MLVAHWLACIWYSIG 197
              LVAHWLACIWYSIG
Sbjct:   357 GLVAHWLACIWYSIG 371

GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0005244 "voltage-gated ion channel activity" evidence=IEA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0005267 "potassium channel activity" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005622 "intracellular" evidence=ISO

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0009986 "cell surface" evidence=ISO

GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0023014 "signal transduction by phosphorylation" evidence=IEA

GO:0034765 "regulation of ion transmembrane transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

RGD|621417 Kcnh5 "potassium voltage-gated channel, subfamily H (eag-related), member 5" [Rattus norvegicus (taxid:10116)]

 Score = 654 (235.3 bits), Expect = 1.1e-63, P = 1.1e-63
 Identities = 119/195 (61%), Positives = 142/195 (72%)

Query:     3 HSHWFQMMSLSADVMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVA 62
             HS   +++ L +D++PQY+QEAPKTPPHI+LHYCAFK  WDWVIL LTFYTAIMVPYNV+
Sbjct:   178 HSRLAEVLQLGSDILPQYKQEAPKTPPHIILHYCAFKTTWDWVILILTFYTAIMVPYNVS 237

Query:    63 FKNKTSEXXXXXXXXXXXXXXXXXXXXLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFVID 122
             FK K +                     LNFHTTFVGPGGEV+SDPK+IRMNYLK+WFVID
Sbjct:   238 FKTKQNNIAWLVLDSVVDVIFLVDIV-LNFHTTFVGPGGEVISDPKLIRMNYLKTWFVID 296

Query:   123 LLSCLPYDVFNAFDHDEDGIGSLFSAXXXXXXXXXXXXXXXXDRYLEYGAAMLILLLCFY 182
             LLSCLPYD+ NAF++ ++GI SLFS+                D YLEYGAA+L+LL+C +
Sbjct:   297 LLSCLPYDIINAFENVDEGISSLFSSLKVVRLLRLGRVARKLDHYLEYGAAVLVLLVCVF 356

Query:   183 MLVAHWLACIWYSIG 197
              LVAHWLACIWYSIG
Sbjct:   357 GLVAHWLACIWYSIG 371

GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005622 "intracellular" evidence=ISO

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009986 "cell surface" evidence=ISO

GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1BXK7 KCNH5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 654 (235.3 bits), Expect = 1.1e-63, P = 1.1e-63
 Identities = 119/195 (61%), Positives = 142/195 (72%)

Query:     3 HSHWFQMMSLSADVMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVA 62
             HS   +++ L +D++PQY+QEAPKTPPHI+LHYCAFK  WDWVIL LTFYTAIMVPYNV+
Sbjct:   178 HSRLAEVLQLGSDILPQYKQEAPKTPPHIILHYCAFKTTWDWVILILTFYTAIMVPYNVS 237

Query:    63 FKNKTSEXXXXXXXXXXXXXXXXXXXXLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFVID 122
             FK K +                     LNFHTTFVGPGGEV+SDPK+IRMNYLK+WFVID
Sbjct:   238 FKTKQNNIAWLVLDSVVDVIFLVDIV-LNFHTTFVGPGGEVISDPKLIRMNYLKTWFVID 296

Query:   123 LLSCLPYDVFNAFDHDEDGIGSLFSAXXXXXXXXXXXXXXXXDRYLEYGAAMLILLLCFY 182
             LLSCLPYD+ NAF++ ++GI SLFS+                D YLEYGAA+L+LL+C +
Sbjct:   297 LLSCLPYDIINAFENVDEGISSLFSSLKVVRLLRLGRVARKLDHYLEYGAAVLVLLVCVF 356

Query:   183 MLVAHWLACIWYSIG 197
              LVAHWLACIWYSIG
Sbjct:   357 GLVAHWLACIWYSIG 371

GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-121128-4 kcnh1b "potassium voltage-gated channel, subfamily H (eag-related), member 1b" [Danio rerio (taxid:7955)]

 Score = 638 (229.6 bits), Expect = 5.0e-62, P = 5.0e-62
 Identities = 115/197 (58%), Positives = 140/197 (71%)

Query:     1 MSHSHWFQMMSLSADVMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYN 60
             + HS   +++ L +D++PQY+QEAPKTPPHI+LHYC FK  WDWVIL LTFYTAIMVPYN
Sbjct:   177 LKHSRLAEVLQLGSDILPQYKQEAPKTPPHIILHYCTFKTTWDWVILILTFYTAIMVPYN 236

Query:    61 VAFKNKTSEXXXXXXXXXXXXXXXXXXXXLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFV 120
             V+FK K +                     LNFHTTFVGP GEV+SDPK+IRMNY+K+WFV
Sbjct:   237 VSFKTKQNNVTWLVVDSIVDVIFLVDIV-LNFHTTFVGPAGEVISDPKLIRMNYVKTWFV 295

Query:   121 IDLLSCLPYDVFNAFDHDEDGIGSLFSAXXXXXXXXXXXXXXXXDRYLEYGAAMLILLLC 180
             IDLLSCLPYDV NAF++ ++GI SLFS+                D Y+EYGAA+L+LL+C
Sbjct:   296 IDLLSCLPYDVINAFENVDEGISSLFSSLKVVRLLRLGRVARKLDHYIEYGAAVLVLLVC 355

Query:   181 FYMLVAHWLACIWYSIG 197
              + L AHWLACIWYSIG
Sbjct:   356 VFGLAAHWLACIWYSIG 372

GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA;IDA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009790 "embryo development" evidence=IMP

GO:0021576 "hindbrain formation" evidence=IMP

GO:0001756 "somitogenesis" evidence=IMP

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9EPI9	KCNH5_RAT	No assigned EC number	0.7487	0.9797	0.1963	yes	N/A
Q02280	KCNAE_DROME	No assigned EC number	0.9589	0.9848	0.1660	no	N/A
Q8NCM2	KCNH5_HUMAN	No assigned EC number	0.7487	0.9797	0.1963	yes	N/A
Q920E3	KCNH5_MOUSE	No assigned EC number	0.7487	0.9797	0.1963	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	198
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	1e-19
pfam00520	194	pfam00520, Ion_trans, Ion transport protein	1e-09

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 85.7 bits (212), Expect = 1e-19
 Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 9/162 (5%)

Query: 42  WDWVILCLTFYTAIMVPYNVAFKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGG 101
           W+ +++ L  Y+A + P+ VAF N  S    L + D++VD+ F +DIVL F   ++ P  
Sbjct: 64  WETLMVVLVAYSAWVYPFEVAFLN-ASPKRGLEIADNVVDLFFAVDIVLTFFVAYIDPRT 122

Query: 102 EV-VSDPKVIRMNYLKSWFVIDLLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRV 160
           ++ V D K I + YL +WF++D+ S +P+            +   +S L ++R  RL RV
Sbjct: 123 QLLVRDRKKIAVRYLSTWFLMDVASTIPFQALAYLITGTVKLNLSYSLLGLLRFWRLRRV 182

Query: 161 VRKLDRYLE------YGAAMLILLLCFYMLVAHWLACIWYSI 196
            +   R LE      Y       LL   + + H   C++Y I
Sbjct: 183 KQLFTR-LEKDIRFSYFWIRCARLLSVTLFLVHCAGCLYYLI 223

Length = 823

>gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein

 Score = 54.6 bits (132), Expect = 1e-09
 Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 19/128 (14%)

Query: 75  VVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKS-WFVIDLLSCLPYDVFN 133
           ++D +  VIF ++++L F                  +  Y +S W ++D L  LP  V  
Sbjct: 1   ILDYVFTVIFTLEMLLKFIALG-------------FKRKYFRSPWNILDFLVVLPSLVSL 47

Query: 134 AFD--HDEDGIGSLFSALKVVRLLRLGRVVRKLDRY---LEYGAAMLILLLCFYMLVAHW 188
                 ++ G+  +   L+++RLLRL R    L      L      L+ LL   +L+   
Sbjct: 48  ILFLLGEDSGLLRVLRLLRLLRLLRLLRRFPGLRTLLQSLGRSLKSLLNLLLLLLLLLFI 107

Query: 189 LACIWYSI 196
            A I   +
Sbjct: 108 FAIIGVQL 115

This family contains Sodium, Potassium, Calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not the Pfam family due to it lacking the first four helices. Length = 194

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	198
KOG0501|consensus	971		100.0
KOG0498|consensus	727		100.0
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.97
KOG0500|consensus	536		99.86
KOG0499|consensus	815		99.84
PF08412	77	Ion_trans_N: Ion transport protein N-terminal; Int	98.97
PF00520	200	Ion_trans: Ion transport protein calcium channel s	98.47
KOG3713|consensus	477		97.79
KOG1545|consensus	507		95.93
KOG2302|consensus	1956		95.26
KOG2301|consensus	1592		88.27
KOG4390|consensus	632		84.21

>KOG0501|consensus

Probab=100.00  E-value=1.4e-40  Score=283.84  Aligned_cols=196  Identities=84%  Similarity=1.448  Sum_probs=188.8

Q ss_pred             CccchhhhhcCCCCCcchhhhhCCCCCCeEEecCChHHHHHHHHHHHHHHHHHhhhheeeeeecCCCCchhhHhHHHHHH
Q psy17886          2 SHSHWFQMMSLSADVMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVAFKNKTSEDVSLLVVDSIVD   81 (198)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~P~s~~~~~Wd~i~~~~~~~~~~~iP~~~~F~~~~~~~~~~~~~~~i~~   81 (198)
                      .||+--++++++++++|||+|+.+|.++++|..++.|+..||.+++++++|.++++||.++|.....+..+|...|-++|
T Consensus       180 khS~la~vm~Lg~DilPQYrQEaPKTpPHIiLHYcaFKt~WDWvIL~LTFYTAimVPyNvaFKnk~~~~vs~lvvDSiVD  259 (971)
T KOG0501|consen  180 KHSNLAEVMQLGSDILPQYRQEAPKTPPHIILHYCAFKTIWDWVILILTFYTAIMVPYNVAFKNKQRNNVSWLVVDSIVD  259 (971)
T ss_pred             cchhHHHHHHhccccchhhhhcCCCCCCeEEEeeehhhhHHHHHHHHHHHHHHheeeeeeeecccccCceeEEEecchhh
Confidence            47888899999999999999999999999999999999999999999999999999999999887766678899999999


Q ss_pred             HHHHHHHHHhheeEEEcCCcEEEecHHHHHHHHhhhhhhhhhhhhccHHHHhcccCCCcchhhHHHHHHHHHHHHHHHHH
Q psy17886         82 VIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFVIDLLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVV  161 (198)
Q Consensus        82 ~if~iDi~l~f~t~~~~~~g~~i~~~~~I~~~Ylk~~f~~Dli~~iP~~~~~~~~~~~~~~~~~~~ll~l~rl~r~~~l~  161 (198)
                      ++|++||+++|+|.|..+.|++|.||+.|+.||+|+||++|+++|+|++++..+...+.++++++.-+++.|++|+.|+.
T Consensus       260 VIF~vDIvLNFHTTFVGPgGEVvsdPkvIRmNYlKsWFvIDLLSCLPYDi~naF~~~degI~SLFSaLKVVRLLRLGRVa  339 (971)
T KOG0501|consen  260 VIFFVDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFVIDLLSCLPYDIFNAFERDDEGIGSLFSALKVVRLLRLGRVA  339 (971)
T ss_pred             hhhhhhhhhhcceeeecCCCceecChhHHhHHHHHHHHHHHHHhcccHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999889999999999999999999999999999999999988888999999999999999999999


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17886        162 RKLDRYLEYGAAMLILLLCFYMLVAHWLACIWYSIG  197 (198)
Q Consensus       162 ~~l~~~~~~~~~~l~~ll~~~~l~~H~~aClw~~i~  197 (198)
                      ++++++++|+...++.+++.+.+++||.||+||.+|
T Consensus       340 RKLD~YlEYGAA~LvLLlC~y~lvAHWlACiWysIG  375 (971)
T KOG0501|consen  340 RKLDHYLEYGAAVLVLLLCVYGLVAHWLACIWYSIG  375 (971)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhheecc
Confidence            999999999999999999999999999999999997

>KOG0498|consensus

Probab=100.00  E-value=1.8e-32  Score=244.33  Aligned_cols=182  Identities=35%  Similarity=0.663  Sum_probs=145.0

Q ss_pred             cchhhhhCCCCCCeEEecCChHHHHHHHHHHHHHHHHHhhhheeeeeecCCC--------CchhhHhHHHHHHHHHHHHH
Q psy17886         17 MPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVAFKNKTS--------EDVSLLVVDSIVDVIFFIDI   88 (198)
Q Consensus        17 ~~~~~~~~~~~~~~ii~P~s~~~~~Wd~i~~~~~~~~~~~iP~~~~F~~~~~--------~~~~~~~~~~i~~~if~iDi   88 (198)
                      .+++..+..+..+++++|+|+++..||.++++.++|++++.|+.++|....+        ....+.+++.++|++|++||
T Consensus        55 ~~~~~~~~~~~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~~d~~~~~~l~v~d~ivD~fflvdI  134 (727)
T KOG0498|consen   55 VPEYKERVDKSRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKCIDGKLAAPLTVLDTIVDIFFLVDI  134 (727)
T ss_pred             cchhhcccccccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEecccccccccccccCceeeHHHHHHHHHHHHH
Confidence            3455666677888899999999999999999999999999999999986643        23457889999999999999


Q ss_pred             HHhheeEEEcCCcE-EEecHHHHHHHHhhhhhhhhhhhhccHHHHhcccC--------CCcchhhHHHHHHHHHHHHHHH
Q psy17886         89 VLNFHTTFVGPGGE-VVSDPKVIRMNYLKSWFVIDLLSCLPYDVFNAFDH--------DEDGIGSLFSALKVVRLLRLGR  159 (198)
Q Consensus        89 ~l~f~t~~~~~~g~-~i~~~~~I~~~Ylk~~f~~Dli~~iP~~~~~~~~~--------~~~~~~~~~~ll~l~rl~r~~~  159 (198)
                      +++|+|+|.++++. +|.||++|++||+|+||++|++|++|++++..+..        +......++...|++|+.|+.+
T Consensus       135 vL~Frtayv~~~s~elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~  214 (727)
T KOG0498|consen  135 VLNFRTAYVDPSSYELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVIGSTSLALESTILVGILLLQRLPRLRRVIP  214 (727)
T ss_pred             HHhheEEEECCCCceeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeeecccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999997775 99999999999999999999999999999987533        1111223344445555555555


Q ss_pred             HHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy17886        160 VVRKLDRYLEY----GAAMLILLLCFYMLVAHWLACIWYSIGF  198 (198)
Q Consensus       160 l~~~l~~~~~~----~~~~l~~ll~~~~l~~H~~aClw~~i~~  198 (198)
                      +++++++....    .|....++++.+++++||.||+||++|.
T Consensus       215 l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~  257 (727)
T KOG0498|consen  215 LFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAI  257 (727)
T ss_pred             HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55555554322    2344668999999999999999999984

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.97  E-value=5.8e-31  Score=243.08  Aligned_cols=193  Identities=26%  Similarity=0.484  Sum_probs=157.0

Q ss_pred             cchhhhhcCCCCCcchh-----hhhCCCCCCeEEecCChHHHHHHHHHHHHHHHHHhhhheeeeeecCCCCchhhHhHHH
Q psy17886          4 SHWFQMMSLSADVMPQY-----RQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVAFKNKTSEDVSLLVVDS   78 (198)
Q Consensus         4 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ii~P~s~~~~~Wd~i~~~~~~~~~~~iP~~~~F~~~~~~~~~~~~~~~   78 (198)
                      |.+++.-+.++++.|+.     +++..+.++++|+|++++++.||.+++++.+|+++++|++++|...... ..+.+++.
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~~F~~~~~~-~~~~~~d~   99 (823)
T PLN03192         21 SGSLSLRNLSKVILPPLGVPSYNQNHIGSDGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVAFLNASPK-RGLEIADN   99 (823)
T ss_pred             CcceehhhcchhhccccCCCccccCccccCCeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHeeCCCCC-CCeeeHHH
Confidence            67888999999999964     4667789999999999999999999999999999999999999654332 24678999


Q ss_pred             HHHHHHHHHHHHhheeEEEcC-CcEEEecHHHHHHHHhhhhhhhhhhhhccHHHHhcccCCCcc---hhhHHHHHHHHHH
Q psy17886         79 IVDVIFFIDIVLNFHTTFVGP-GGEVVSDPKVIRMNYLKSWFVIDLLSCLPYDVFNAFDHDEDG---IGSLFSALKVVRL  154 (198)
Q Consensus        79 i~~~if~iDi~l~f~t~~~~~-~g~~i~~~~~I~~~Ylk~~f~~Dli~~iP~~~~~~~~~~~~~---~~~~~~ll~l~rl  154 (198)
                      ++|++|++|++++|+|+|+++ +|.+|+||++|++||+|+||++|+++++|++++.....+...   ...+++++|++|+
T Consensus       100 i~~~~F~iDi~l~f~~ay~d~~~~~lV~d~~~I~~~Yl~~~f~~Dlis~lP~~~i~~~~~~~~~~~~~~~~l~llrl~Rl  179 (823)
T PLN03192        100 VVDLFFAVDIVLTFFVAYIDPRTQLLVRDRKKIAVRYLSTWFLMDVASTIPFQALAYLITGTVKLNLSYSLLGLLRFWRL  179 (823)
T ss_pred             HHHHHHHHHHHhheeEEEEeCCCcEEEeCHHHHHHHHHHHhHHHHHHHHhHHHHHHHHhcCCccchHHHHHHHHHHHHHH
Confidence            999999999999999999984 358999999999999999999999999999887543322212   2234455566666


Q ss_pred             HHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17886        155 LRLGRVVRKLDRYLE--YGAAMLILLLCFYMLVAHWLACIWYSIG  197 (198)
Q Consensus       155 ~r~~~l~~~l~~~~~--~~~~~l~~ll~~~~l~~H~~aClw~~i~  197 (198)
                      .|+.++++.+++..+  +.+++++++++.+++++||+||+||++|
T Consensus       180 ~ri~~~~~~le~~~~~~~~~~~~~kli~~~l~~~H~~aC~~y~i~  224 (823)
T PLN03192        180 RRVKQLFTRLEKDIRFSYFWIRCARLLSVTLFLVHCAGCLYYLIA  224 (823)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666665443  3456788999999999999999999986

>KOG0500|consensus

Probab=99.86  E-value=4.8e-22  Score=167.88  Aligned_cols=143  Identities=27%  Similarity=0.489  Sum_probs=117.0

Q ss_pred             HHHHHHHHhhhheeeeeecCCCC-chhhHhHHHHHHHHHHHHHHHhheeEEEcCCcEEEecHHHHHHHHhhhh-hhhhhh
Q psy17886         47 LCLTFYTAIMVPYNVAFKNKTSE-DVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSW-FVIDLL  124 (198)
Q Consensus        47 ~~~~~~~~~~iP~~~~F~~~~~~-~~~~~~~~~i~~~if~iDi~l~f~t~~~~~~g~~i~~~~~I~~~Ylk~~-f~~Dli  124 (198)
                      .+..+|+.+..+.+.+|++-... ...|..+|+..|++|++|++++.+|||.+ +|.+|+|-+|.++||.++. |.+|++
T Consensus         4 s~~vLYN~~~li~r~~F~di~~~y~~~wl~ld~~~D~vyllDi~v~~R~gyle-qGllV~~~~Kl~~hY~~s~~f~lD~l   82 (536)
T KOG0500|consen    4 SLGVLYNMIVLIVRAAFDDIQSSYLENWLPLDYLFDFVYLLDIIVRSRTGYLE-QGLLVKDTSKLRKHYVHSTQFKLDVL   82 (536)
T ss_pred             EEehHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHh-cCeeehhhHHHHHHHHHhhhhhhhhh
Confidence            45678999999998999765433 34688999999999999999999999998 9999999999999999985 999999


Q ss_pred             hhccHHHHhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH---HhHH-HHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17886        125 SCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVRKLDRY---LEYG-AAMLILLLCFYMLVAHWLACIWYSIG  197 (198)
Q Consensus       125 ~~iP~~~~~~~~~~~~~~~~~~~ll~l~rl~r~~~l~~~l~~~---~~~~-~~~l~~ll~~~~l~~H~~aClw~~i~  197 (198)
                      |++|++++..+.+..    .   ..|++|+.|+.|+.+.+++.   .+++ ..++.+++..++.+.||.||+||+++
T Consensus        83 ~liP~D~l~~~~~~~----~---~~r~nRllk~yRl~~F~~rTetrT~~Pn~fri~~lv~~~~ilfHWNaClYf~iS  152 (536)
T KOG0500|consen   83 SLIPLDLLLFKDGSA----S---LERLNRLLKIYRLFEFFDRTETRTTYPNAFRISKLVHYCLILFHWNACLYFLIS  152 (536)
T ss_pred             hhcchhHHhhcCCcc----h---HHHHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhHHHHhhh
Confidence            999999998765432    2   33466666666666666654   4444 55688888999999999999999986

>KOG0499|consensus

Probab=99.84  E-value=2.8e-20  Score=160.01  Aligned_cols=159  Identities=23%  Similarity=0.446  Sum_probs=129.5

Q ss_pred             EEecCC-hHHHHHHHHHHHHHHHHHhhhheeeeeecCCCC-chhhHhHHHHHHHHHHHHHH-HhheeEEEcCCcEEEecH
Q psy17886         31 ILLHYC-AFKAIWDWVILCLTFYTAIMVPYNVAFKNKTSE-DVSLLVVDSIVDVIFFIDIV-LNFHTTFVGPGGEVVSDP  107 (198)
Q Consensus        31 ii~P~s-~~~~~Wd~i~~~~~~~~~~~iP~~~~F~~~~~~-~~~~~~~~~i~~~if~iDi~-l~f~t~~~~~~g~~i~~~  107 (198)
                      .|+|+. +++..|-.++.++..+++|.+|++.+|+.+... ...|.+.|+++|+++++||. ++-+.-|.. .|..|+|.
T Consensus       219 sidp~~~r~Y~~WL~lVtlaf~~N~w~IPlR~sfPyQT~dN~~~Wli~Dy~cDiIYllDmlf~q~Rl~fvr-gG~~ik~k  297 (815)
T KOG0499|consen  219 SIDPYTDRLYLLWLLLVTLAFNWNCWFIPLRLSFPYQTADNIHYWLIADYICDIIYLLDMLFIQPRLQFVR-GGDIIKDK  297 (815)
T ss_pred             ccCcccchHHHHHHHHHHHHHhhceeEEeeeccCCccccccchhhhhHHHHhhHHHHHHHhhhhhhheeee-CceEEEec
Confidence            689976 999999999999999999999999999987643 34688999999999999997 477788876 89999999


Q ss_pred             HHHHHHHhhhh-hhhhhhhhccHHHHhcccCCCcchhhHHHHHHHHHHHHHHH---HHHHHHHHHhHH-HHHHHHHHHHH
Q psy17886        108 KVIRMNYLKSW-FVIDLLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGR---VVRKLDRYLEYG-AAMLILLLCFY  182 (198)
Q Consensus       108 ~~I~~~Ylk~~-f~~Dli~~iP~~~~~~~~~~~~~~~~~~~ll~l~rl~r~~~---l~~~l~~~~~~~-~~~l~~ll~~~  182 (198)
                      +..++||+++. |-+|++|++|+++.+.+.+.+    .   ++|++|.+++..   +.+.+++.++.. ..+.++...++
T Consensus       298 ndtrk~Yl~sr~FklDllsiLPldllY~~~G~~----p---~wR~~R~lK~~sF~e~~~~Le~i~s~~y~~RV~rT~~Ym  370 (815)
T KOG0499|consen  298 NDTRKHYLTSRKFKLDLLSILPLDLLYLFFGFN----P---MWRANRMLKYTSFFEFNHHLESIMSKAYIYRVIRTTGYL  370 (815)
T ss_pred             hHHHHHHHHhhhhhhhHHhhhhHHHHHHHhccc----h---hhhhhhHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHH
Confidence            99999999985 999999999999988754321    2   235555555444   444455555444 45678889999


Q ss_pred             HHHHHHHHHHHHHhc
Q psy17886        183 MLVAHWLACIWYSIG  197 (198)
Q Consensus       183 ~l~~H~~aClw~~i~  197 (198)
                      ++++|+.||+||+.+
T Consensus       371 lyilHinacvYY~~S  385 (815)
T KOG0499|consen  371 LYILHINACVYYWAS  385 (815)
T ss_pred             HHHHhhhHHHHHHHH
Confidence            999999999999864

>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels

Probab=98.97  E-value=4.3e-10  Score=73.97  Aligned_cols=63  Identities=17%  Similarity=0.511  Sum_probs=48.9

Q ss_pred             chhhhhcCCCCCcchhhhhCCCCCCeEEecCChHHHHHHHHHHHHHHHHHhhhheeeeeecCCC
Q psy17886          5 HWFQMMSLSADVMPQYRQEAPKTPPHILLHYCAFKAIWDWVILCLTFYTAIMVPYNVAFKNKTS   68 (198)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~P~s~~~~~Wd~i~~~~~~~~~~~iP~~~~F~~~~~   68 (198)
                      .+++.......+..+.++. .+.+.++|+|+|++|.+||++++++.+++++++|+.++|..++.
T Consensus        13 ~sl~~f~S~~ai~~E~~R~-~~~~~~IIHP~S~fR~~WD~~m~~~~~~~~~~iP~~isF~~d~~   75 (77)
T PF08412_consen   13 FSLRVFGSKKAIEKEKERQ-RSSGPWIIHPFSKFRFYWDLIMLILLLYNLIIIPFRISFFSDEE   75 (77)
T ss_pred             HHHHHHccHHHHHHHHHHH-hcCCCeEEcCCccHHHHHHHHHHHHHHHHHHHHhhhheEecCcC
Confidence            3455555555554444444 34566899999999999999999999999999999999987653

>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins

Probab=98.47  E-value=5.4e-07  Score=68.84  Aligned_cols=110  Identities=32%  Similarity=0.532  Sum_probs=73.2

Q ss_pred             hHHHHHHHHHHHHHHHhheeEEEcCCcEEEecHHHHHHHHhhhh-hhhhhhhhccHHHHhcccCCCc----chhhHHHHH
Q psy17886         75 VVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSW-FVIDLLSCLPYDVFNAFDHDED----GIGSLFSAL  149 (198)
Q Consensus        75 ~~~~i~~~if~iDi~l~f~t~~~~~~g~~i~~~~~I~~~Ylk~~-f~~Dli~~iP~~~~~~~~~~~~----~~~~~~~ll  149 (198)
                      ++|.+.++++.+|+++++.+....            +++|++++ .++|+++++|............    ...+..+++
T Consensus         1 ~~~~~~~~~f~~e~~l~~~~~~~~------------~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   68 (200)
T PF00520_consen    1 ILEIIFDVIFILEIVLRFFALGFK------------RRRYFRSWWNWFDFISVIPSIVSVILRSYGSASAQSLLRIFRLL   68 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCG-------------GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--HHCHCHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHhccH------------HHHHhcChhhcccccccccccccccccccccccccceEEEEEee
Confidence            368899999999999999964321            67799975 7799999999866554322211    123444555


Q ss_pred             HHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17886        150 KVVRLLRLGRVVRKLDRYL---EYGAAMLILLLCFYMLVAHWLACIWYSI  196 (198)
Q Consensus       150 ~l~rl~r~~~l~~~l~~~~---~~~~~~l~~ll~~~~l~~H~~aClw~~i  196 (198)
                      |+.|++|+.+..+.+.+..   ......+.+.+..+..+.|.+||+++.+
T Consensus        69 ~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~l  118 (200)
T PF00520_consen   69 RLLRLLRLLRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQL  118 (200)
T ss_dssp             HHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccchhhee
Confidence            5555555555544444432   2334456677788888999999998865

The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....

>KOG3713|consensus

Probab=97.79  E-value=0.00086  Score=58.13  Aligned_cols=82  Identities=26%  Similarity=0.427  Sum_probs=57.7

Q ss_pred             hhHhHHHHHHHHHHHHHHHhheeEEEcCCcEEEecHHHHHHHHhhhh-hhhhhhhhccHHHHhccc--CC----C-cchh
Q psy17886         72 SLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSW-FVIDLLSCLPYDVFNAFD--HD----E-DGIG  143 (198)
Q Consensus        72 ~~~~~~~i~~~if~iDi~l~f~t~~~~~~g~~i~~~~~I~~~Ylk~~-f~~Dli~~iP~~~~~~~~--~~----~-~~~~  143 (198)
                      .+.+++.++.+.|.++.++|+-.+= +            ..+++|+- =++|++|++|+++-....  ..    + .+.+
T Consensus       241 ~l~~vE~vCi~WFT~E~llR~~~~P-~------------k~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~~l~~~~  307 (477)
T KOG3713|consen  241 ILTYVETVCIAWFTFEYLLRFLVAP-N------------KLEFFKSPLNIIDLLAILPFYLELLLTLFGGESLKELENAG  307 (477)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHcCc-h------------HHHHHhCcchHHHHHHHHHHHHHHHHHHhccchHHHHhhhh
Confidence            4678999999999999999998641 1            25677775 889999999998754321  11    1 1223


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH
Q psy17886        144 SLFSALKVVRLLRLGRVVRKLDR  166 (198)
Q Consensus       144 ~~~~ll~l~rl~r~~~l~~~l~~  166 (198)
                      .+++++|+.|++|+.|+-+....
T Consensus       308 ~vvrvlR~lRI~RI~KLaRhS~G  330 (477)
T KOG3713|consen  308 LVVRVLRVLRILRIFKLARHSTG  330 (477)
T ss_pred             hhHHHHHHHHHHHHHHHHhhhHH
Confidence            56677777777777777665543

>KOG1545|consensus

Probab=95.93  E-value=0.046  Score=46.15  Aligned_cols=79  Identities=14%  Similarity=0.388  Sum_probs=50.5

Q ss_pred             hhHhHHHHHHHHHHHHHHHhheeEEEcCCcEEEecHHHHHHHHhhh-hhhhhhhhhccHHHHhcc-----c-CC---C-c
Q psy17886         72 SLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKS-WFVIDLLSCLPYDVFNAF-----D-HD---E-D  140 (198)
Q Consensus        72 ~~~~~~~i~~~if~iDi~l~f~t~~~~~~g~~i~~~~~I~~~Ylk~-~f~~Dli~~iP~~~~~~~-----~-~~---~-~  140 (198)
                      .+.+++..+.+.|.++.++||...=..             ..+.++ .-++|++|++|+.+-...     . .+   + .
T Consensus       254 PFFiVEt~CIiWFtfEllvRf~aCPsK-------------~~Ff~nimNiIDiVaI~PyFitlgtela~q~g~g~~gqqa  320 (507)
T KOG1545|consen  254 PFFIVETLCIIWFTFELLVRFFACPSK-------------ATFFRNIMNIIDIVAIIPYFITLGTELAEQQGGGGQGQQA  320 (507)
T ss_pred             chHhHHHHHHHHHhHHHHHHHhcCccH-------------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCccchhh
Confidence            457889999999999999999864221             123344 358999999998875431     1 11   1 1


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHH
Q psy17886        141 GIGSLFSALKVVRLLRLGRVVRK  163 (198)
Q Consensus       141 ~~~~~~~ll~l~rl~r~~~l~~~  163 (198)
                      -...++|++|+.|++|+.|+.+.
T Consensus       321 MSlAILRViRLVRVFRIFKLSRH  343 (507)
T KOG1545|consen  321 MSLAILRVIRLVRVFRIFKLSRH  343 (507)
T ss_pred             hhHHHHHHHHHHHHhhheeeccc
Confidence            12345566666666666666543

>KOG2302|consensus

Probab=95.26  E-value=0.049  Score=51.44  Aligned_cols=130  Identities=22%  Similarity=0.347  Sum_probs=74.6

Q ss_pred             CCCCCCeEEecCChHHH---------HHHHHHHHHHHHHHhhhheeeeeecCCCCchhh-HhHHHHHHHHHHHHHHHhhe
Q psy17886         24 APKTPPHILLHYCAFKA---------IWDWVILCLTFYTAIMVPYNVAFKNKTSEDVSL-LVVDSIVDVIFFIDIVLNFH   93 (198)
Q Consensus        24 ~~~~~~~ii~P~s~~~~---------~Wd~i~~~~~~~~~~~iP~~~~F~~~~~~~~~~-~~~~~i~~~if~iDi~l~f~   93 (198)
                      +..|..+++.|+++||.         .+|.+++++++.+++.+-.+--=....+....+ ..-++++..+|+.++.++--
T Consensus      1099 r~~Ws~ylF~pQ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtialerp~i~~~s~EriFltlsnyIFtaIfV~Em~lKVV 1178 (1956)
T KOG2302|consen 1099 RELWSKYLFSPQNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIALERPAIVEGSTERIFLTLSNYIFTAIFVVEMTLKVV 1178 (1956)
T ss_pred             HHHHHHHhcCcccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHhcccccccCcceEEEEEecchHHHHHHHHHHHHHHH
Confidence            44456678999998864         577778888888888877654222222222222 23348899999999988754


Q ss_pred             -eEEEcCCcEEEecHHHHHHHHhhh-hhhhhhhhhcc--HHHHhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy17886         94 -TTFVGPGGEVVSDPKVIRMNYLKS-WFVIDLLSCLP--YDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVRKLDR  166 (198)
Q Consensus        94 -t~~~~~~g~~i~~~~~I~~~Ylk~-~f~~Dli~~iP--~~~~~~~~~~~~~~~~~~~ll~l~rl~r~~~l~~~l~~  166 (198)
                       .|.+-  |+         ..|+++ |-.+|-+-.+-  +++....  .+.+-.+++..+|.+|++|-.|-.+.+.+
T Consensus      1179 ALGl~f--ge---------~aYl~ssWN~LDgflv~vsviDilvs~--asa~g~kILgVlrvLRlLRtlRpLRviSr 1242 (1956)
T KOG2302|consen 1179 ALGLYF--GE---------QAYLRSSWNVLDGFLVAVSVIDILVSQ--ASAGGAKILGVLRVLRLLRTLRPLRVISR 1242 (1956)
T ss_pred             hhhhcc--ch---------HHHHHHHHHhhhHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHHhhHHHHHhh
Confidence             44332  21         568876 66777654332  2222211  12223345555555555555555555544

>KOG2301|consensus

Probab=88.27  E-value=4.1  Score=41.32  Aligned_cols=109  Identities=18%  Similarity=0.297  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHHHhhhheeeeeecCCC-CchhhHhHHHHHHHHHHHHHHHhheeEEEcCCcEEEecHHHHHHHHhhh-h
Q psy17886         41 IWDWVILCLTFYTAIMVPYNVAFKNKTS-EDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKS-W  118 (198)
Q Consensus        41 ~Wd~i~~~~~~~~~~~iP~~~~F~~~~~-~~~~~~~~~~i~~~if~iDi~l~f~t~~~~~~g~~i~~~~~I~~~Ylk~-~  118 (198)
                      ..+.++..++..+....+.+-....+.. .+......|++...+|.+.++++.-.     .|-..         |.++ |
T Consensus       841 ~f~~~I~~~illSs~ala~ed~~~~~~~~~~~~L~y~D~~Ft~iFt~Em~lK~ia-----~Gf~~---------y~rn~w  906 (1592)
T KOG2301|consen  841 WFEAFILTVILISSLALAFEDVRGENRPTINGILEYADYIFTYIFTFEMLLKWIA-----YGFFF---------YFRNAW  906 (1592)
T ss_pred             HHHHHHHHHHHHhhhcccccCcchhhchhhhhHHHHHHHHHHHHHHHHHHHHHHH-----hHHHH---------HHhhHH
Confidence            3455555666666665554444433332 23345778999999999999998762     45211         8887 6


Q ss_pred             hhhhhhhhccHHHHhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy17886        119 FVIDLLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVRKLDR  166 (198)
Q Consensus       119 f~~Dli~~iP~~~~~~~~~~~~~~~~~~~ll~l~rl~r~~~l~~~l~~  166 (198)
                      .++|.+...-..+.......   .....+.+|.+|.+|..|.++..+.
T Consensus       907 ~~lDf~Vv~vslisl~~~~~---~~~~ik~lr~lRaLRPLR~i~r~~~  951 (1592)
T KOG2301|consen  907 NWLDFVVVIVSLISLIASLK---ILSLIKSLRILRALRPLRALSRFPG  951 (1592)
T ss_pred             hhhhHHHhhhHHHHHHHhhh---hhhHHHHHHHHHHHHHHHHHHHccc
Confidence            88998876654443332222   1234455555555555555555444

>KOG4390|consensus

Probab=84.21  E-value=0.076  Score=45.28  Aligned_cols=76  Identities=26%  Similarity=0.475  Sum_probs=47.8

Q ss_pred             hhHhHHHHHHHHHHHHHHHhheeEEEcCCcEEEecHHHHHHHHhhh-hhhhhhhhhccHHHHhcccCCCcchhhHHHHHH
Q psy17886         72 SLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKS-WFVIDLLSCLPYDVFNAFDHDEDGIGSLFSALK  150 (198)
Q Consensus        72 ~~~~~~~i~~~if~iDi~l~f~t~~~~~~g~~i~~~~~I~~~Ylk~-~f~~Dli~~iP~~~~~~~~~~~~~~~~~~~ll~  150 (198)
                      .+..+|..+-.+|..+.++++..+=.             +.+++++ .-++|+++++|+++-.....+++-.+. +--+|
T Consensus       228 aFFclDTACVmIFT~EYlLRL~aAPs-------------R~rF~RSvMSiIDVvAIlPYYigLv~t~N~DVSGa-FVTLR  293 (632)
T KOG4390|consen  228 AFFCLDTACVMIFTGEYLLRLFAAPS-------------RYRFLRSVMSIIDVVAILPYYIGLVMTDNEDVSGA-FVTLR  293 (632)
T ss_pred             eeEEecceeEEEeeHHHHHHHHcCch-------------HHHHHHHHHHHHHHhhhhhhheEEEecCCccccce-eEEEE
Confidence            34567777888888888888876521             2567777 588999999998876544444432222 22334


Q ss_pred             HHHHHHHHHHH
Q psy17886        151 VVRLLRLGRVV  161 (198)
Q Consensus       151 l~rl~r~~~l~  161 (198)
                      ++|++|+.|..
T Consensus       294 VFRVFRIFKFS  304 (632)
T KOG4390|consen  294 VFRVFRIFKFS  304 (632)
T ss_pred             eeeeeeeeeec
Confidence            44444444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	198
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	2e-05
1ors_C	132	Potassium channel; voltage-dependent, voltage sens	4e-04
2kyh_A	147	KVAP, voltage-gated potassium channel; ION channel	5e-04

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Length = 514

 Score = 43.1 bits (101), Expect = 2e-05
 Identities = 19/99 (19%), Positives = 40/99 (40%), Gaps = 13/99 (13%)

Query: 111 RMNYLKSWF-VIDLLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVR--KLDRY 167
           +  +  +   +ID+++ +PY V          +    +  +VV++ R+ R++R  KL R+
Sbjct: 266 KAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMRILRIFKLSRH 325

Query: 168 ----------LEYGAAMLILLLCFYMLVAHWLACIWYSI 196
                     L+     L LL+ F  +     +   Y  
Sbjct: 326 SKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFA 364

>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1 Length = 132

 Score = 38.0 bits (88), Expect = 4e-04
 Identities = 21/130 (16%), Positives = 45/130 (34%), Gaps = 18/130 (13%)

Query: 38  FKAIWDWVILCLTFYTAIMVPYNVAFKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFV 97
              + +  +      + I+V      +      V L +VD I+ +I + D          
Sbjct: 4   EHPLVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRA----- 58

Query: 98  GPGGEVVSDPKVIRMNYLKSWFVIDLLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRL 157
                  S        Y+K   + ++ + +P  +    +    G  +     ++VRLLR 
Sbjct: 59  -----YKSGDP---AGYVK-KTLYEIPALVPAGLLALIE----GHLAGLGLFRLVRLLRF 105

Query: 158 GRVVRKLDRY 167
            R++  + R 
Sbjct: 106 LRILLIISRG 115

>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix} Length = 147

 Score = 38.0 bits (88), Expect = 5e-04
 Identities = 23/138 (16%), Positives = 52/138 (37%), Gaps = 18/138 (13%)

Query: 38  FKAIWDWVILCLTFYTAIMVPYNVAFKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFV 97
              + +  +      + I+V      +      V L +VD I+ +I + D     +    
Sbjct: 19  EHPLVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAY---- 74

Query: 98  GPGGEVVSDPKVIRMNYLKSWFVIDLLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRL 157
                   DP      Y+K   + ++ + +P  +    +    G  +     ++VRLLR 
Sbjct: 75  -----KSGDPA----GYVK-KTLYEIPALVPAGLLALIE----GHLAGLGLFRLVRLLRF 120

Query: 158 GRVVRKLDRYLEYGAAML 175
            R++  + R  ++ +A+ 
Sbjct: 121 LRILLIISRGSKFLSAIA 138

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	198
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	99.35
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	98.87
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	98.35
2kyh_A	147	KVAP, voltage-gated potassium channel; ION channel	98.33
1ors_C	132	Potassium channel; voltage-dependent, voltage sens	98.33
3rvy_A	285	ION transport protein; tetrameric ION channel, vol	97.64
4dxw_A	229	Navrh, ION transport protein; tetrameric, voltage-	97.47
2a9h_A	155	Voltage-gated potassium channel; potassium channel	88.85

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A

Probab=99.35  E-value=1.3e-12  Score=102.33  Aligned_cols=141  Identities=16%  Similarity=0.214  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHHhhhheeeeeecCCCCchhhHhHHHHHHHHHHHHHHHhheeEEEcCCcEEEecHHHHHHHHhhhhhh
Q psy17886         41 IWDWVILCLTFYTAIMVPYNVAFKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFV  120 (198)
Q Consensus        41 ~Wd~i~~~~~~~~~~~iP~~~~F~~~~~~~~~~~~~~~i~~~if~iDi~l~f~t~~~~~~g~~i~~~~~I~~~Ylk~~f~  120 (198)
                      .||.++.++++++....+.+...+.+.+....+..+|.+++++|.+|+++|+.++.   +          .++|+|+ ++
T Consensus         9 ~f~~~i~~lil~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~~---~----------~~~y~~~-~i   74 (223)
T 1orq_C            9 LVELGVSYAALLSVIVVVVECTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKSG---D----------PAGYVKK-TL   74 (223)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHTTS---C----------HHHHHHH-HH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHHHHHHcccc---c----------HHHHHHH-hH
Confidence            48999999999999988876544443333446788999999999999999999861   1          2789988 89


Q ss_pred             hhhhhhccHHHHhcccCCCcchhhHHHHHHHHHHHHHHHHHH---HHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17886        121 IDLLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVR---KLDRYLE--YGAAMLILLLCFYMLVAHWLACIWYS  195 (198)
Q Consensus       121 ~Dli~~iP~~~~~~~~~~~~~~~~~~~ll~l~rl~r~~~l~~---~l~~~~~--~~~~~l~~ll~~~~l~~H~~aClw~~  195 (198)
                      +|+++++|+........+. +....++.+|++|++|+.|+.+   +..+...  .....+..++...+...|+.||++|.
T Consensus        75 iDllailP~~~~~~~~~~~-~~~~~lr~lRllRllR~~r~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  153 (223)
T 1orq_C           75 YEIPALVPAGLLALIEGHL-AGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIYI  153 (223)
T ss_dssp             HHCTTHHHHHHHHHHHHHH-HTTTCHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998764310000 0012244445555555544433   1111111  11123445566677789999999987


Q ss_pred             h
Q psy17886        196 I  196 (198)
Q Consensus       196 i  196 (198)
                      +
T Consensus       154 ~  154 (223)
T 1orq_C          154 V  154 (223)
T ss_dssp             T
T ss_pred             H
Confidence            5

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*

Probab=98.87  E-value=3.6e-09  Score=92.54  Aligned_cols=150  Identities=15%  Similarity=0.287  Sum_probs=92.7

Q ss_pred             ecC-ChHHHHHHHHHHHHHHHHHhhhheeee--eecC------------------------CCCchhhHhHHHHHHHHHH
Q psy17886         33 LHY-CAFKAIWDWVILCLTFYTAIMVPYNVA--FKNK------------------------TSEDVSLLVVDSIVDVIFF   85 (198)
Q Consensus        33 ~P~-s~~~~~Wd~i~~~~~~~~~~~iP~~~~--F~~~------------------------~~~~~~~~~~~~i~~~if~   85 (198)
                      +|+ |...+.++.+++++++.+.+...++..  +..+                        ......+..++.++.++|.
T Consensus       174 ~p~sS~~a~~f~~~~i~~Illsii~~~leT~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~i~~~iFt  253 (514)
T 2r9r_B          174 YPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPFFIVETLCIIWFS  253 (514)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCCCHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccchhhhHHHHHHHHHHHHHH
Confidence            464 677889999999999999888776542  1111                        0012356789999999999


Q ss_pred             HHHHHhheeEEEcCCcEEEecHHHHHHHHhhh-hhhhhhhhhccHHHHhcccCCC-c-----chhhHHHHHHHHHHHHHH
Q psy17886         86 IDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKS-WFVIDLLSCLPYDVFNAFDHDE-D-----GIGSLFSALKVVRLLRLG  158 (198)
Q Consensus        86 iDi~l~f~t~~~~~~g~~i~~~~~I~~~Ylk~-~f~~Dli~~iP~~~~~~~~~~~-~-----~~~~~~~ll~l~rl~r~~  158 (198)
                      +|+++++.++-   +          .++|+++ |.++|+++++|..+........ .     .....++++|++|++|+.
T Consensus       254 iE~ilR~~~~~---~----------k~~Y~ks~wniiDli~iip~~i~l~~~~~~~~~~~~~~~~~~lrvlRllRvlRil  320 (514)
T 2r9r_B          254 FEFLVRFFACP---S----------KAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMRILRIF  320 (514)
T ss_dssp             HHHHHHHHHSS---C----------SSSSTTSHHHHHHHHTTHHHHHHHHHHHTSCSHHHHHTTHHHHHHHHHHGGGGGG
T ss_pred             HHHHHHHHhCC---c----------HHHHHhchhHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHH
Confidence            99999998741   1          1479998 6899999999987754432110 0     112345566666666665


Q ss_pred             HHHHHHHH------HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17886        159 RVVRKLDR------YLEYGAAMLILLLCFYMLVAHWLACIWYS  195 (198)
Q Consensus       159 ~l~~~l~~------~~~~~~~~l~~ll~~~~l~~H~~aClw~~  195 (198)
                      |+.+....      .+..+.-.+..+++.+++..+++||+.|.
T Consensus       321 kL~r~~~~l~~l~~tl~~s~~~l~~ll~~l~i~~~if~~~~~~  363 (514)
T 2r9r_B          321 KLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYF  363 (514)
T ss_dssp             GGGGSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhe
Confidence            55443222      11112222333344445556777776664

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*

Probab=98.35  E-value=9.9e-08  Score=79.36  Aligned_cols=145  Identities=17%  Similarity=0.183  Sum_probs=77.2

Q ss_pred             EecCChHHHHHHHHHHHHHHHHHhhhheeeeeecCCCC-chhhHhHHHHHHHHHHHHHHHhheeEEEcCCcEEEecHHHH
Q psy17886         32 LLHYCAFKAIWDWVILCLTFYTAIMVPYNVAFKNKTSE-DVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVI  110 (198)
Q Consensus        32 i~P~s~~~~~Wd~i~~~~~~~~~~~iP~~~~F~~~~~~-~~~~~~~~~i~~~if~iDi~l~f~t~~~~~~g~~i~~~~~I  110 (198)
                      ..|+|+.   .+.+++++++.+.+.+..+. .+..... ......++.++-++|.+|+++++... .+  .         
T Consensus         3 ~~p~s~~---f~~~~~~~i~ls~~~~~~~t-~~~~~~~~~~~~~~~~~~~~~~f~~e~~~r~~~~-~~--~---------   66 (355)
T 3beh_A            3 VLPFLRI---YAPLNAVLAAPGLLAVAALT-IPDMSGRSRLALAALLAVIWGAYLLQLAATLLKR-RA--G---------   66 (355)
T ss_dssp             ----CCS---SSSHHHHHHHHHHHHHHHHT-SSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CS--C---------
T ss_pred             CCchhHH---HHHHHHHHHHHHHHHHHHHc-ccchhhhHHHHHHHHHhHHHHHHHHHHHHhcccc-cc--c---------
Confidence            3577764   36666666677766666552 2221111 11123344444456899999988532 11  1         


Q ss_pred             HHHHhh-hhhhhhhhhh-ccHHHHhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy17886        111 RMNYLK-SWFVIDLLSC-LPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVRKLDRYLEYGAAMLILLLCFYMLVAHW  188 (198)
Q Consensus       111 ~~~Ylk-~~f~~Dli~~-iP~~~~~~~~~~~~~~~~~~~ll~l~rl~r~~~l~~~l~~~~~~~~~~l~~ll~~~~l~~H~  188 (198)
                       ..|.+ .+.++|++++ +|+.......   ....+.++++|++|+.|..+-.+.+.+....+.-.+...+..++++.|+
T Consensus        67 -~~~~~~~~~i~Dl~~i~~p~~~~~~~~---~~~~r~lr~~R~lrl~r~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~  142 (355)
T 3beh_A           67 -VVRDRTPKIAIDVLAVLVPLAAFLLDG---SPDWSLYCAVWLLKPLRDSTFFPVLGRVLANEARNLIGVTTLFGVVLFA  142 (355)
T ss_dssp             -SSCCCHHHHHHHHHHHHHHHHHHHSCC---SGGGGGGGGGGGSHHHHTCSSHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred             -ceeccCcchHHHHHHHHHHHHHHHhcc---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             12333 4689999998 6987654321   1222333444444444443334444444433333445556666778999


Q ss_pred             HHHHHHHh
Q psy17886        189 LACIWYSI  196 (198)
Q Consensus       189 ~aClw~~i  196 (198)
                      .||++|.+
T Consensus       143 ~a~~~~~~  150 (355)
T 3beh_A          143 VALAAYVI  150 (355)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999875

>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}

Probab=98.33  E-value=2.8e-07  Score=67.56  Aligned_cols=106  Identities=18%  Similarity=0.281  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHHHhhhheeeeeecCCCCchhhHhHHHHHHHHHHHHHHHhheeEEEcCCcEEEecHHHHHHHHhhhhhh
Q psy17886         41 IWDWVILCLTFYTAIMVPYNVAFKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFV  120 (198)
Q Consensus        41 ~Wd~i~~~~~~~~~~~iP~~~~F~~~~~~~~~~~~~~~i~~~if~iDi~l~f~t~~~~~~g~~i~~~~~I~~~Ylk~~f~  120 (198)
                      .||..+.++++.+...+-++...+.+.+.......+|.++.++|.+|.++++..+   ++          .++|.++ -+
T Consensus        22 ~f~~~i~~lil~sv~~v~~et~~~i~~~~~~~~~~id~~~~~iF~~Ey~lRl~~a---~~----------k~~f~~~-~i   87 (147)
T 2kyh_A           22 LVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKS---GD----------PAGYVKK-TL   87 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TC----------HHHHHHH-ST
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHC---Cc----------HHHHHHH-HH
Confidence            4788888888888777776665544332233467789999999999999999875   21          2568887 68


Q ss_pred             hhhhhhccHHHHhcccCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q psy17886        121 IDLLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVRKL  164 (198)
Q Consensus       121 ~Dli~~iP~~~~~~~~~~~~~~~~~~~ll~l~rl~r~~~l~~~l  164 (198)
                      +|++|++|+.......    +..+..+++|++|++|+.|+.+..
T Consensus        88 iDllailP~~~~~~~~----~~lr~lRvlRllRv~Rllrl~r~~  127 (147)
T 2kyh_A           88 YEIPALVPAGLLALIE----GHLAGLGLFRLVRLLRFLRILLII  127 (147)
T ss_dssp             TTHHHHCCHHHHHHHH----HHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999988654321    112334444444444444444433

>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1

Probab=98.33  E-value=3.1e-07  Score=66.09  Aligned_cols=106  Identities=18%  Similarity=0.255  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHHHhhhheeeeeecCCCCchhhHhHHHHHHHHHHHHHHHhheeEEEcCCcEEEecHHHHHHHHhhhhh
Q psy17886         40 AIWDWVILCLTFYTAIMVPYNVAFKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWF  119 (198)
Q Consensus        40 ~~Wd~i~~~~~~~~~~~iP~~~~F~~~~~~~~~~~~~~~i~~~if~iDi~l~f~t~~~~~~g~~i~~~~~I~~~Ylk~~f  119 (198)
                      +.+|.+++.+++.+....-.+..-+.+.+....+..+|.++.++|.+|+++++..+   ++          .++|.+ +-
T Consensus         6 ~~f~~~i~~lIlls~~~~~~et~~~~~~~~~~~l~~~d~~~~~iFt~E~~lRl~~~---~~----------~~~y~~-~n   71 (132)
T 1ors_C            6 PLVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKS---GD----------PAGYVK-KT   71 (132)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TS----------TTTTTT-TC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC----------HHHHHH-HH
Confidence            45788888888888777666543222222223466789999999999999999864   11          156888 88


Q ss_pred             hhhhhhhccHHHHhcccCCCcchhhHHHHHHHHHHHHHHHHHHH
Q psy17886        120 VIDLLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVRK  163 (198)
Q Consensus       120 ~~Dli~~iP~~~~~~~~~~~~~~~~~~~ll~l~rl~r~~~l~~~  163 (198)
                      ++|+++++|....... +   +....++.+|++|++|+.|+.+.
T Consensus        72 iiDllailp~~~~~~~-~---~~l~~lr~lRllRv~Rvlkl~r~  111 (132)
T 1ors_C           72 LYEIPALVPAGLLALI-E---GHLAGLGLFRLVRLLRFLRILLI  111 (132)
T ss_dssp             GGGTGGGSCHHHHHHH-H---HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh-c---chHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999998765433 1   11223334444444444444433

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*

Probab=97.64  E-value=5.7e-05  Score=60.76  Aligned_cols=77  Identities=21%  Similarity=0.301  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHHhhhheeeeeecCCCCchhhHhHHHHHHHHHHHHHHHhheeEEEcCCcEEEecHHHHHHHHhhh-h
Q psy17886         40 AIWDWVILCLTFYTAIMVPYNVAFKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKS-W  118 (198)
Q Consensus        40 ~~Wd~i~~~~~~~~~~~iP~~~~F~~~~~~~~~~~~~~~i~~~if~iDi~l~f~t~~~~~~g~~i~~~~~I~~~Ylk~-~  118 (198)
                      ..+|.++.++++.+.....++..-+...........+|.++-++|.+|+++++..     .|          ++|.++ |
T Consensus        30 ~~f~~~i~~li~l~~i~~~~~~~~~~~~~~~~~l~~~e~~~~~iF~~E~~lrl~~-----~~----------~~y~~~~w   94 (285)
T 3rvy_A           30 SFFTKFIIYLIVLNGITMGLETSKTFMQSFGVYTTLFNQIVITIFTIEIILRIYV-----HR----------ISFFKDPW   94 (285)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCTTHHHHSHHHHHHHHHHHHHHHHHHHHHHHHT-----TG----------GGGGGCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-----Hh----------HHHHcCCh
Confidence            3567778888888877765543211111122346778999999999999999975     34          568887 5


Q ss_pred             hhhhhhhhccHHH
Q psy17886        119 FVIDLLSCLPYDV  131 (198)
Q Consensus       119 f~~Dli~~iP~~~  131 (198)
                      -++|+++++|...
T Consensus        95 n~~Dl~~v~~~~i  107 (285)
T 3rvy_A           95 SLFDFFVVAISLV  107 (285)
T ss_dssp             HHHHHHHHHHHHS
T ss_pred             HHhHHHHHHHHHH
Confidence            8899998887654

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}

Probab=97.47  E-value=0.00056  Score=53.10  Aligned_cols=76  Identities=14%  Similarity=0.373  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHHHhhhheeeeeecCCCCchhhHhHHHHHHHHHHHHHHHhheeEEEcCCcEEEecHHHHHHHHhhh-h
Q psy17886         40 AIWDWVILCLTFYTAIMVPYNVAFKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKS-W  118 (198)
Q Consensus        40 ~~Wd~i~~~~~~~~~~~iP~~~~F~~~~~~~~~~~~~~~i~~~if~iDi~l~f~t~~~~~~g~~i~~~~~I~~~Ylk~-~  118 (198)
                      +.+|.++.++++.+......+. .+.+++.......+|.++-++|.+|+++|.-..     |        -.++|.++ |
T Consensus        12 ~~f~~~i~~~I~ln~i~l~~~~-~~~~~~~~~~l~~~e~~~~~iF~~E~~lri~~~-----~--------~~~~y~~~~w   77 (229)
T 4dxw_A           12 RIFQFTVVSIIILNAVLIGATT-YELDPLFLETIHLLDYGITIFFVIEILIRFIGE-----K--------QKADFFKSGW   77 (229)
T ss_dssp             HHHHHHHHHHHHHHHHSTTTCC-SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------------CHH
T ss_pred             chHHHHHHHHHHHHHHHHHHcc-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----C--------chhHHhcCCc
Confidence            4678888888998888876654 222211123456789999999999999998752     1        12568886 5


Q ss_pred             hhhhhhhhccH
Q psy17886        119 FVIDLLSCLPY  129 (198)
Q Consensus       119 f~~Dli~~iP~  129 (198)
                      -.+|+++++|.
T Consensus        78 ni~D~~~v~~~   88 (229)
T 4dxw_A           78 NIFDTVIVAIS   88 (229)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            78998776653

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1

Probab=88.85  E-value=0.42  Score=34.66  Aligned_cols=12  Identities=17%  Similarity=-0.092  Sum_probs=0.0

Q ss_pred             hhhhhhhhhccH
Q psy17886        118 WFVIDLLSCLPY  129 (198)
Q Consensus       118 ~f~~Dli~~iP~  129 (198)
                      +-+.|+++++|.
T Consensus        15 ~~~~dli~~lp~   26 (155)
T 2a9h_A           15 EGRGRLIKHMPP   26 (155)
T ss_dssp             ------------
T ss_pred             hhHHHHHHHHHH
Confidence            467899999885

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	198
d1orsc_	132	Potassium channel KVAP {Archaeon Aeropyrum pernix	98.07

>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel KVAP
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=98.07  E-value=1e-06  Score=61.66  Aligned_cols=113  Identities=17%  Similarity=0.284  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHHHhhhheeeeeecCCCCchhhHhHHHHHHHHHHHHHHHhheeEEEcCCcEEEecHHHHHHHHhhhhhh
Q psy17886         41 IWDWVILCLTFYTAIMVPYNVAFKNKTSEDVSLLVVDSIVDVIFFIDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKSWFV  120 (198)
Q Consensus        41 ~Wd~i~~~~~~~~~~~iP~~~~F~~~~~~~~~~~~~~~i~~~if~iDi~l~f~t~~~~~~g~~i~~~~~I~~~Ylk~~f~  120 (198)
                      ..|..+..+++.+...+-.+..-+.+++....+..+|.++.++|.+|+++++..+   ++      +    .+|.+ +-+
T Consensus         7 ~~e~~i~~lillnvi~~~let~~~~~~~~~~~l~~~e~v~~~iF~~E~~lrl~~~---~~------~----~~~~~-~~~   72 (132)
T d1orsc_           7 LVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKS---GD------P----AGYVK-KTL   72 (132)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TS------T----TTTTT-TCG
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhC---Cc------c----ceeCC-cch
Confidence            4677888888888887666543332332234568899999999999999998753   11      1    22343 467


Q ss_pred             hhhhhhccHHHHhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17886        121 IDLLSCLPYDVFNAFDHDEDGIGSLFSALKVVRLLRLGRVVRKLDRYL  168 (198)
Q Consensus       121 ~Dli~~iP~~~~~~~~~~~~~~~~~~~ll~l~rl~r~~~l~~~l~~~~  168 (198)
                      +|+++++|........+. .+..+.+|++|++|++|+.+..+..+...
T Consensus        73 iDl~ai~p~~~~~~~~~~-~~~lr~lR~~R~~R~lrl~~~~~~~~~ll  119 (132)
T d1orsc_          73 YEIPALVPAGLLALIEGH-LAGLGLFRLVRLLRFLRILLIISRGSKFL  119 (132)
T ss_dssp             GGTGGGSCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998775433211 12234455555555555555555555443