Psyllid ID: psy17954

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140---
Protein Sequence
MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQGFPMKQGEIPGLTDTTIPRRLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVTLQVSG
Secondary Structure (PSIPRED)
ccEEccccccccEEEEEEcccccHHHHHccccccEEcccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccHHcccc
Secondary Structure Prediction (SSPRO)
ccEEEEccccccEEEEEEccHHHHHHHHHHHHHHccccccccccccEEEEEEEccccccccccccccccccccEEcccccccHHHHHHHHHEcccccccccEEEEEEccccccccccccccccccccccHEEEEcccEEEEcc
Coil and Loop (DISEMBL)
mklnisypatgcQKLVEIADEHKLRVFydkrmgmevpadsigdeWKGYIVRIsggndkqgfpmkqgeipgltdttiprrlgpkRASKIRKLFnlskeddvRQYVIkrtlppkpakegkKKVRKlykapkiqrlitpvtlqvsg
Flexible Loop (DISEMBL)
mklnisypatgcqKLVEIADEHKLRVFYDKrmgmevpadsigdeWKGYIVRISggndkqgfpmkqgeipgltdttiprrlgpkraskirklfnlskeddvrqyvikrtlppkpakegkkkvrklykapkiqrlitpvtlqvsg
Low Complexity Region (SEG)
MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQGFPMKQGEIPGLTDTTIPRRLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVTLQVSG
Disordered region (IsUnstruct)
*****SYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISG************************************LFN******VRQYVI***********************KIQRLIT********
Disordered Region (DISOPRED)
MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQGFPMKQGEIPGLTDTTI**********KIRKLFNLSKEDDVRQYVIK******************YKAPKIQRLITPVTLQV**
Disordered Region (DISEMBL)
MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQGFPMKQGEIPGLTDTTIPRRLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPK**********KLYKAPKIQRLITPVTLQVSG
Disordered Region (DISPRO)
MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQGFPMKQGEIPGLTDTTIPRRLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKP********RKLYKAPKIQRLITPVTLQV**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQGFPMKQGEIPGLTDTTIPRRLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVTLQVSG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	143	2.2.26 [Sep-21-2011]
Q95V32	253	40S ribosomal protein S6	N/A	N/A	0.958	0.541	0.564	1e-54
Q94624	253	40S ribosomal protein S6	N/A	N/A	0.958	0.541	0.554	2e-53
Q9BMX5	247	40S ribosomal protein S6	N/A	N/A	0.937	0.542	0.554	3e-51
P29327	248	40S ribosomal protein S6	yes	N/A	0.937	0.540	0.559	9e-51
P39017	249	40S ribosomal protein S6	N/A	N/A	0.930	0.534	0.549	6e-50
Q2PQM1	248	40S ribosomal protein S6	N/A	N/A	0.937	0.540	0.554	9e-50
P62755	249	40S ribosomal protein S6	yes	N/A	0.930	0.534	0.544	1e-49
P62754	249	40S ribosomal protein S6	yes	N/A	0.930	0.534	0.544	1e-49
Q4R4K6	249	40S ribosomal protein S6	N/A	N/A	0.930	0.534	0.544	1e-49
P62753	249	40S ribosomal protein S6	yes	N/A	0.930	0.534	0.544	1e-49

>sp|Q95V32|RS6_SPOFR 40S ribosomal protein S6 OS=Spodoptera frugiperda GN=RpS6 PE=2 SV=1

 Score =  211 bits (537), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 109/193 (56%), Positives = 124/193 (64%), Gaps = 56/193 (29%)

Query: 1   MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQG 60
           MKLN+S+PATGCQKL E+ DEHKLR+FY+KRMG EV AD +GDEWKGY++RI+GGNDKQG
Sbjct: 1   MKLNVSFPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRIAGGNDKQG 60

Query: 61  FPMKQG-----------------------------------------------------E 67
           FPMKQG                                                     E
Sbjct: 61  FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGEQE 120

Query: 68  IPGLTDTTIPRRLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKA 127
           IPGLTD  +PRRLGPKRASKIRKLFNLSKEDDVR+YV+KR L   PAKEGK+  +  YKA
Sbjct: 121 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRLL---PAKEGKENAKPRYKA 177

Query: 128 PKIQRLITPVTLQ 140
           PKIQRL+TPV LQ
Sbjct: 178 PKIQRLVTPVVLQ 190

May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.
Spodoptera frugiperda (taxid: 7108)

>sp|Q94624|RS6_MANSE 40S ribosomal protein S6 OS=Manduca sexta GN=RpS6 PE=2 SV=1

 Score =  207 bits (527), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 107/193 (55%), Positives = 123/193 (63%), Gaps = 56/193 (29%)

Query: 1   MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQG 60
           MKLN+S+PATGCQKL E+ DEHKLR+FY+KRMG EV AD +GDEWKGY++R++GGNDKQG
Sbjct: 1   MKLNVSFPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADLLGDEWKGYVLRVAGGNDKQG 60

Query: 61  FPMKQG-----------------------------------------------------E 67
           FPMKQG                                                     E
Sbjct: 61  FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGEQE 120

Query: 68  IPGLTDTTIPRRLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKA 127
           IPGLTD  +PRRLGPKRASKIRKLFNLSKEDDVR+YV+K  L   PAKEGK+  +  YKA
Sbjct: 121 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKALL---PAKEGKENAKPRYKA 177

Query: 128 PKIQRLITPVTLQ 140
           PKIQRL+TPV LQ
Sbjct: 178 PKIQRLVTPVVLQ 190

May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.

Manduca sexta (taxid: 7130)

>sp|Q9BMX5|RS6_APLCA 40S ribosomal protein S6 OS=Aplysia californica GN=RPS6 PE=2 SV=1

 Score =  200 bits (508), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 107/193 (55%), Positives = 119/193 (61%), Gaps = 59/193 (30%)

Query: 1   MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQG 60
           MKLNISYPATGCQKL+E+ DE KLR FYDKR+  E+ AD +GDEWKGY+VRISGGNDKQG
Sbjct: 1   MKLNISYPATGCQKLIEVDDEKKLRPFYDKRISAELSADCLGDEWKGYVVRISGGNDKQG 60

Query: 61  FPMKQG-----------------------------------------------------E 67
           FPMKQG                                                     +
Sbjct: 61  FPMKQGVLTATRVRLLLDKNHSCYRPRRTGERKRKSVRGCIVDSNLSVLSLVIIKKGEQD 120

Query: 68  IPGLTDTTIPRRLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKA 127
           IPGLTD TIPRRLGPKRASKIRKLFNLSKEDDVRQYV++R LP +  K+ K       KA
Sbjct: 121 IPGLTDKTIPRRLGPKRASKIRKLFNLSKEDDVRQYVVRRPLPERDGKKAK------SKA 174

Query: 128 PKIQRLITPVTLQ 140
           PKIQRL+TPV LQ
Sbjct: 175 PKIQRLVTPVVLQ 187

May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.

Aplysia californica (taxid: 6500)

>sp|P29327|RS6_DROME 40S ribosomal protein S6 OS=Drosophila melanogaster GN=RpS6 PE=1 SV=1

 Score =  198 bits (503), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 108/193 (55%), Positives = 121/193 (62%), Gaps = 59/193 (30%)

Query: 1   MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQG 60
           MKLN+SYPATGCQKL E+ DEHKLRVFY+KRMG  V AD +GDEWKGY +RI+GGNDKQG
Sbjct: 1   MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQG 60

Query: 61  FPMKQG-----------------------------------------------------E 67
           FPMKQG                                                     +
Sbjct: 61  FPMKQGVLTHGRVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDANMSVLALVVLKKGEKD 120

Query: 68  IPGLTDTTIPRRLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKA 127
           IPGLTDTTIPRRLGPKRASKIRKL+NLSKEDDVR++V++R   P PAK+ KK      KA
Sbjct: 121 IPGLTDTTIPRRLGPKRASKIRKLYNLSKEDDVRRFVVRR---PLPAKDNKKAT---SKA 174

Query: 128 PKIQRLITPVTLQ 140
           PKIQRLITPV LQ
Sbjct: 175 PKIQRLITPVVLQ 187

May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.

Drosophila melanogaster (taxid: 7227)

>sp|P39017|RS6_XENLA 40S ribosomal protein S6 OS=Xenopus laevis GN=rps6 PE=2 SV=1

 Score =  195 bits (496), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 106/193 (54%), Positives = 119/193 (61%), Gaps = 60/193 (31%)

Query: 1   MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQG 60
           MKLNIS+PATGCQKL+E+ DE KLR FY+KRM  EV AD +GDEWKGY+VRISGGNDKQG
Sbjct: 1   MKLNISFPATGCQKLIEVEDERKLRTFYEKRMATEVAADPLGDEWKGYVVRISGGNDKQG 60

Query: 61  FPMKQG-----------------------------------------------------E 67
           FPMKQG                                                     +
Sbjct: 61  FPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVRKGEKD 120

Query: 68  IPGLTDTTIPRRLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKA 127
           IPGLTD T+PRRLGPKRAS+IRKLFNLSKEDDVRQYV+++ L    AKEGKK      KA
Sbjct: 121 IPGLTDNTVPRRLGPKRASRIRKLFNLSKEDDVRQYVVRKPL----AKEGKK---PRTKA 173

Query: 128 PKIQRLITPVTLQ 140
           PKIQRL+TP  LQ
Sbjct: 174 PKIQRLVTPRVLQ 186

May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.

Xenopus laevis (taxid: 8355)

>sp|Q2PQM1|RS6_GLOMM 40S ribosomal protein S6 OS=Glossina morsitans morsitans GN=RpS6 PE=2 SV=1

 Score =  195 bits (495), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 107/193 (55%), Positives = 120/193 (62%), Gaps = 59/193 (30%)

Query: 1   MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQG 60
           MKLN+SYPATGCQKL E+ DEHKLRVFY+K MG  V AD +GDEWKGY++RISGGNDKQG
Sbjct: 1   MKLNVSYPATGCQKLFEVNDEHKLRVFYEKHMGQVVEADILGDEWKGYMLRISGGNDKQG 60

Query: 61  FPMKQG-----------------------------------------------------E 67
           FPMKQG                                                     +
Sbjct: 61  FPMKQGVLTHDRVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDANMSVLALVIVKKGEKD 120

Query: 68  IPGLTDTTIPRRLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKA 127
           IPGLTDT++PRRLGPKRASKIRKL+NLSK DDVR YVI+R   P PAK+ KK +    KA
Sbjct: 121 IPGLTDTSVPRRLGPKRASKIRKLYNLSKVDDVRPYVIRR---PLPAKDNKKAI---SKA 174

Query: 128 PKIQRLITPVTLQ 140
           PKIQRLITPV LQ
Sbjct: 175 PKIQRLITPVVLQ 187

May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.

Glossina morsitans morsitans (taxid: 37546)

>sp|P62755|RS6_RAT 40S ribosomal protein S6 OS=Rattus norvegicus GN=Rps6 PE=1 SV=1

 Score =  194 bits (494), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 105/193 (54%), Positives = 120/193 (62%), Gaps = 60/193 (31%)

Query: 1   MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQG 60
           MKLNIS+PATGCQKL+E+ DE KLR FY+KRM  EV AD++G+EWKGY+VRISGGNDKQG
Sbjct: 1   MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQG 60

Query: 61  FPMKQG-----------------------------------------------------E 67
           FPMKQG                                                     +
Sbjct: 61  FPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKD 120

Query: 68  IPGLTDTTIPRRLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKA 127
           IPGLTDTT+PRRLGPKRAS+IRKLFNLSKEDDVRQYV+++ L     KEGKK      KA
Sbjct: 121 IPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYVVRKPL----NKEGKK---PRTKA 173

Query: 128 PKIQRLITPVTLQ 140
           PKIQRL+TP  LQ
Sbjct: 174 PKIQRLVTPRVLQ 186

May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.

Rattus norvegicus (taxid: 10116)

>sp|P62754|RS6_MOUSE 40S ribosomal protein S6 OS=Mus musculus GN=Rps6 PE=1 SV=1

 Score =  194 bits (494), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 105/193 (54%), Positives = 120/193 (62%), Gaps = 60/193 (31%)

Query: 1   MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQG 60
           MKLNIS+PATGCQKL+E+ DE KLR FY+KRM  EV AD++G+EWKGY+VRISGGNDKQG
Sbjct: 1   MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQG 60

Query: 61  FPMKQG-----------------------------------------------------E 67
           FPMKQG                                                     +
Sbjct: 61  FPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKD 120

Query: 68  IPGLTDTTIPRRLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKA 127
           IPGLTDTT+PRRLGPKRAS+IRKLFNLSKEDDVRQYV+++ L     KEGKK      KA
Sbjct: 121 IPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYVVRKPL----NKEGKK---PRTKA 173

Query: 128 PKIQRLITPVTLQ 140
           PKIQRL+TP  LQ
Sbjct: 174 PKIQRLVTPRVLQ 186

May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.

Mus musculus (taxid: 10090)

>sp|Q4R4K6|RS6_MACFA 40S ribosomal protein S6 OS=Macaca fascicularis GN=RPS6 PE=2 SV=1

 Score =  194 bits (494), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 105/193 (54%), Positives = 120/193 (62%), Gaps = 60/193 (31%)

Query: 1   MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQG 60
           MKLNIS+PATGCQKL+E+ DE KLR FY+KRM  EV AD++G+EWKGY+VRISGGNDKQG
Sbjct: 1   MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQG 60

Query: 61  FPMKQG-----------------------------------------------------E 67
           FPMKQG                                                     +
Sbjct: 61  FPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKD 120

Query: 68  IPGLTDTTIPRRLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKA 127
           IPGLTDTT+PRRLGPKRAS+IRKLFNLSKEDDVRQYV+++ L     KEGKK      KA
Sbjct: 121 IPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYVVRKPL----NKEGKK---PRTKA 173

Query: 128 PKIQRLITPVTLQ 140
           PKIQRL+TP  LQ
Sbjct: 174 PKIQRLVTPRVLQ 186

May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.

Macaca fascicularis (taxid: 9541)

>sp|P62753|RS6_HUMAN 40S ribosomal protein S6 OS=Homo sapiens GN=RPS6 PE=1 SV=1

 Score =  194 bits (494), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 105/193 (54%), Positives = 120/193 (62%), Gaps = 60/193 (31%)

Query: 1   MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQG 60
           MKLNIS+PATGCQKL+E+ DE KLR FY+KRM  EV AD++G+EWKGY+VRISGGNDKQG
Sbjct: 1   MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQG 60

Query: 61  FPMKQG-----------------------------------------------------E 67
           FPMKQG                                                     +
Sbjct: 61  FPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKD 120

Query: 68  IPGLTDTTIPRRLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKA 127
           IPGLTDTT+PRRLGPKRAS+IRKLFNLSKEDDVRQYV+++ L     KEGKK      KA
Sbjct: 121 IPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYVVRKPL----NKEGKK---PRTKA 173

Query: 128 PKIQRLITPVTLQ 140
           PKIQRL+TP  LQ
Sbjct: 174 PKIQRLVTPRVLQ 186

May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
242011008	250	40S ribosomal protein S6, putative [Pedi	0.944	0.54	0.616	5e-55
112982661	253	ribosomal protein S6 [Bombyx mori] gi|54	0.958	0.541	0.559	6e-53
20139899	253	RecName: Full=40S ribosomal protein S6 g	0.958	0.541	0.564	7e-53
307095100	247	putative 40S ribosomal protein S6 [Triat	0.944	0.546	0.585	9e-53
357621767	253	ribosomal protein S6 [Danaus plexippus]	0.958	0.541	0.564	1e-52
288869508	248	ribosomal protein S6 [Tribolium castaneu	0.937	0.540	0.580	2e-52
315115403	252	ribosomal protein S6 [Euphydryas aurinia	0.958	0.543	0.559	3e-52
342356391	253	ribosomal protein S6 [Heliconius melpome	0.958	0.541	0.554	3e-52
383849256	251	PREDICTED: 40S ribosomal protein S6-like	0.930	0.529	0.569	3e-52
241913774	244	ribosomal protein S6 [Pinctada maxima]	0.958	0.561	0.569	4e-52

>gi|242011008|ref|XP_002426249.1| 40S ribosomal protein S6, putative [Pediculus humanus corporis] gi|212510312|gb|EEB13511.1| 40S ribosomal protein S6, putative [Pediculus humanus corporis]

 Score =  218 bits (556), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 119/193 (61%), Positives = 126/193 (65%), Gaps = 58/193 (30%)

Query: 1   MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQG 60
           MKLNISYPATGCQKL+EI DEHKLRVFYDKRMG EV ADS+GDEWKGYIVRISGGNDKQG
Sbjct: 1   MKLNISYPATGCQKLIEITDEHKLRVFYDKRMGAEVEADSLGDEWKGYIVRISGGNDKQG 60

Query: 61  FPMKQG-----------------------------------------------------E 67
           FPMKQG                                                     E
Sbjct: 61  FPMKQGVLTNGRVRLLLSKGHSCYRPRRDGERKRKSVRGCIVDSNLSVLALVIKKKGEQE 120

Query: 68  IPGLTDTTIPRRLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKA 127
           IPGLTD+T+PRRLGPKRASKIRKLFNLSKEDDV+Q+VIKR   P P KEGK K R  +KA
Sbjct: 121 IPGLTDSTVPRRLGPKRASKIRKLFNLSKEDDVKQFVIKR---PLPLKEGKTKQR--FKA 175

Query: 128 PKIQRLITPVTLQ 140
           PKIQRLITP  LQ
Sbjct: 176 PKIQRLITPTVLQ 188

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|112982661|ref|NP_001037566.1| ribosomal protein S6 [Bombyx mori] gi|54609293|gb|AAV34862.1| ribosomal protein S6 [Bombyx mori]

 Score =  211 bits (538), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 108/193 (55%), Positives = 124/193 (64%), Gaps = 56/193 (29%)

Query: 1   MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQG 60
           MKLN+SYPATGCQKL E+ DEHKLR+FY+KRMG EV AD +GDEWKGY++R++GGNDKQG
Sbjct: 1   MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 60

Query: 61  FPMKQG-----------------------------------------------------E 67
           FPMKQG                                                     E
Sbjct: 61  FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 120

Query: 68  IPGLTDTTIPRRLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKA 127
           IPGLTD  +PRRLGPKRASKIRKLFNLSKEDDVR+YV+KR L   PAKEGK+  +  +KA
Sbjct: 121 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVL---PAKEGKENAKPRHKA 177

Query: 128 PKIQRLITPVTLQ 140
           PKIQRL+TPV LQ
Sbjct: 178 PKIQRLVTPVVLQ 190

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|20139899|sp|Q95V32.1|RS6_SPOFR RecName: Full=40S ribosomal protein S6 gi|16566731|gb|AAL26582.1|AF429980_1 ribosomal protein S6 [Spodoptera frugiperda]

 Score =  211 bits (537), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 109/193 (56%), Positives = 124/193 (64%), Gaps = 56/193 (29%)

Query: 1   MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQG 60
           MKLN+S+PATGCQKL E+ DEHKLR+FY+KRMG EV AD +GDEWKGY++RI+GGNDKQG
Sbjct: 1   MKLNVSFPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRIAGGNDKQG 60

Query: 61  FPMKQG-----------------------------------------------------E 67
           FPMKQG                                                     E
Sbjct: 61  FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGEQE 120

Query: 68  IPGLTDTTIPRRLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKA 127
           IPGLTD  +PRRLGPKRASKIRKLFNLSKEDDVR+YV+KR L   PAKEGK+  +  YKA
Sbjct: 121 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRLL---PAKEGKENAKPRYKA 177

Query: 128 PKIQRLITPVTLQ 140
           PKIQRL+TPV LQ
Sbjct: 178 PKIQRLVTPVVLQ 190

Source: Spodoptera frugiperda

Species: Spodoptera frugiperda

Genus: Spodoptera

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307095100|gb|ADN29856.1| putative 40S ribosomal protein S6 [Triatoma matogrossensis]

 Score =  211 bits (537), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 113/193 (58%), Positives = 124/193 (64%), Gaps = 58/193 (30%)

Query: 1   MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQG 60
           MKLN++YPATGCQKL EI DEHKLR+FY+KRMG EV AD +GDEWKGY+VRISGGNDKQG
Sbjct: 1   MKLNVAYPATGCQKLFEITDEHKLRIFYEKRMGAEVEADQLGDEWKGYVVRISGGNDKQG 60

Query: 61  FPMKQG-----------------------------------------------------E 67
           FPMKQG                                                     +
Sbjct: 61  FPMKQGVLTNGRVRLLLSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVKKGEQD 120

Query: 68  IPGLTDTTIPRRLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKA 127
           IPGLTD +IPRRLGPKRASKIRKLFNLSKEDDVRQYVIKR   P P KEG+ K R  +KA
Sbjct: 121 IPGLTDHSIPRRLGPKRASKIRKLFNLSKEDDVRQYVIKR---PLPLKEGQTKQR--FKA 175

Query: 128 PKIQRLITPVTLQ 140
           PKIQRLITP+ LQ
Sbjct: 176 PKIQRLITPIVLQ 188

Source: Triatoma matogrossensis

Species: Triatoma matogrossensis

Genus: Triatoma

Family: Reduviidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357621767|gb|EHJ73490.1| ribosomal protein S6 [Danaus plexippus]

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 109/193 (56%), Positives = 124/193 (64%), Gaps = 56/193 (29%)

Query: 1   MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQG 60
           MKLN+SYPATGCQKL E+ DEHKLR+FY+KRMG EV AD +GDEWKGYI+RI+GGNDKQG
Sbjct: 1   MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYILRIAGGNDKQG 60

Query: 61  FPMKQG-----------------------------------------------------E 67
           FPMKQG                                                     E
Sbjct: 61  FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGEQE 120

Query: 68  IPGLTDTTIPRRLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKA 127
           IPGLTD  +PRRLGPKRASKIRKLFNL+K+DDVR+YV+KR L   PAKEGK+  +  YKA
Sbjct: 121 IPGLTDGNVPRRLGPKRASKIRKLFNLTKQDDVRRYVVKRLL---PAKEGKENAKPRYKA 177

Query: 128 PKIQRLITPVTLQ 140
           PKIQRL+TPV LQ
Sbjct: 178 PKIQRLVTPVVLQ 190

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|288869508|ref|NP_001165861.1| ribosomal protein S6 [Tribolium castaneum] gi|270014845|gb|EFA11293.1| hypothetical protein TcasGA2_TC010830 [Tribolium castaneum]

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 112/193 (58%), Positives = 124/193 (64%), Gaps = 59/193 (30%)

Query: 1   MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQG 60
           MKLN+SYPATGCQKL E+ DEHK+R+FY+KRMG EV AD +GDEWKGY++RISGGNDKQG
Sbjct: 1   MKLNVSYPATGCQKLFEVVDEHKIRIFYEKRMGQEVEADPLGDEWKGYVLRISGGNDKQG 60

Query: 61  FPMKQG-----------------------------------------------------E 67
           FPMKQG                                                     E
Sbjct: 61  FPMKQGVLTNSRVRLLLSKGHSCYRPRRDGERKRKSVRGCIVDGNLSVLALVIVRKGEQE 120

Query: 68  IPGLTDTTIPRRLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKA 127
           IPGLTDTT+PRRLGPKRAS IRKLFNLSKEDDVRQYV+KR   P P KEGKK   + +KA
Sbjct: 121 IPGLTDTTVPRRLGPKRASNIRKLFNLSKEDDVRQYVVKR---PLPQKEGKK---QRFKA 174

Query: 128 PKIQRLITPVTLQ 140
           PKIQRLITPV LQ
Sbjct: 175 PKIQRLITPVVLQ 187

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|315115403|gb|ADT80674.1| ribosomal protein S6 [Euphydryas aurinia]

 Score =  209 bits (532), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 108/193 (55%), Positives = 124/193 (64%), Gaps = 56/193 (29%)

Query: 1   MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQG 60
           MKLN+SYPATGCQKL E+ DEHKLR+FY+KRMG EV AD +GDEWKGYI+R++GGNDKQG
Sbjct: 1   MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYILRVAGGNDKQG 60

Query: 61  FPMKQG-----------------------------------------------------E 67
           FPMKQG                                                     E
Sbjct: 61  FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 120

Query: 68  IPGLTDTTIPRRLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKA 127
           IPGLTD  +PRRLGPKRASKIRKLFNL+K+DDVR+YV+KR L   PAKEGK+  +  YKA
Sbjct: 121 IPGLTDGNVPRRLGPKRASKIRKLFNLTKQDDVRRYVVKRLL---PAKEGKENAKPRYKA 177

Query: 128 PKIQRLITPVTLQ 140
           PKIQRL+TPV LQ
Sbjct: 178 PKIQRLVTPVVLQ 190

Source: Euphydryas aurinia

Species: Euphydryas aurinia

Genus: Euphydryas

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|342356391|gb|AEL28854.1| ribosomal protein S6 [Heliconius melpomene cythera]

 Score =  209 bits (532), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 107/193 (55%), Positives = 124/193 (64%), Gaps = 56/193 (29%)

Query: 1   MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQG 60
           MKLN+SYPATGCQKL E+ DEHKLR+FY+KRMG EV AD +GDEWKGYI+R++GGNDKQG
Sbjct: 1   MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYILRVAGGNDKQG 60

Query: 61  FPMKQG-----------------------------------------------------E 67
           FPMKQG                                                     E
Sbjct: 61  FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 120

Query: 68  IPGLTDTTIPRRLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKA 127
           IPGLTD  +PRRLGPKRASKIRKLFNL+K+DDVR+YV+KR L   PAKEGK+  +  YKA
Sbjct: 121 IPGLTDGNVPRRLGPKRASKIRKLFNLTKQDDVRRYVVKRLL---PAKEGKENAKPRYKA 177

Query: 128 PKIQRLITPVTLQ 140
           P+IQRL+TPV LQ
Sbjct: 178 PRIQRLVTPVVLQ 190

Source: Heliconius melpomene cythera

Species: Heliconius melpomene

Genus: Heliconius

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383849256|ref|XP_003700261.1| PREDICTED: 40S ribosomal protein S6-like [Megachile rotundata]

 Score =  209 bits (531), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 110/193 (56%), Positives = 126/193 (65%), Gaps = 60/193 (31%)

Query: 1   MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQG 60
           MKLN+SYPATGCQKL EI+DEHKLR+FY+KRMG EV AD++G+EWKGY+VRISGGNDKQG
Sbjct: 1   MKLNVSYPATGCQKLFEISDEHKLRIFYEKRMGAEVEADALGNEWKGYVVRISGGNDKQG 60

Query: 61  FPMKQG-----------------------------------------------------E 67
           FPMKQG                                                     E
Sbjct: 61  FPMKQGVLTNGRVRLLLSKGHSCYRPRRDGERKRKSVRGCIVDSNLSVLALVIVKKGEKE 120

Query: 68  IPGLTDTTIPRRLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKA 127
           IPGLTDT +PRRLGPKRAS+IRKLFNLSKEDDVRQ+V+KR +     KEGKK   + +KA
Sbjct: 121 IPGLTDTNVPRRLGPKRASRIRKLFNLSKEDDVRQFVVKRPV----QKEGKK---ERFKA 173

Query: 128 PKIQRLITPVTLQ 140
           PKIQRLITP+TLQ
Sbjct: 174 PKIQRLITPLTLQ 186

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241913774|gb|ACS72283.1| ribosomal protein S6 [Pinctada maxima]

 Score =  209 bits (531), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 110/193 (56%), Positives = 124/193 (64%), Gaps = 56/193 (29%)

Query: 1   MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQG 60
           MKLNIS+PATGCQKL+E+ DE KLR FY+KRM  EVPADS+GDEWKGY++RI+GGNDKQG
Sbjct: 1   MKLNISFPATGCQKLIEVDDEKKLRPFYEKRMASEVPADSLGDEWKGYVLRIAGGNDKQG 60

Query: 61  FPMKQG-----------------------------------------------------E 67
           FPMKQG                                                     E
Sbjct: 61  FPMKQGVLTNVRVRLLLSKGHSCFRPRRSGERRRKSVRGCIVDSNLSVLAMVIVEKGEKE 120

Query: 68  IPGLTDTTIPRRLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKA 127
           IPGLTDTT+PRRLGPKRASKIRKLFNLSKEDDVRQYV++R L P+  KE KK   +  KA
Sbjct: 121 IPGLTDTTVPRRLGPKRASKIRKLFNLSKEDDVRQYVVRRPLAPREGKESKK---QQTKA 177

Query: 128 PKIQRLITPVTLQ 140
           PKIQRL+TPV LQ
Sbjct: 178 PKIQRLVTPVVLQ 190

Source: Pinctada maxima

Species: Pinctada maxima

Genus: Pinctada

Family: Pteriidae

Order: Pterioida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
UNIPROTKB|Q7SC99	239	NCU08502 "40S ribosomal protei	0.475	0.284	0.779	6e-48
POMBASE|SPAC13G6.07c	239	rps601 "40S ribosomal protein	0.510	0.305	0.712	7.7e-48
POMBASE|SPAPB1E7.12	239	rps602 "40S ribosomal protein	0.510	0.305	0.712	7.7e-48
UNIPROTKB|J9NV22	249	J9NV22 "40S ribosomal protein	0.454	0.261	0.738	5.3e-47
UNIPROTKB|G4N9W9	239	MGG_03236 "40S ribosomal prote	0.503	0.301	0.684	9.7e-46
UNIPROTKB|J9P449	247	J9P449 "40S ribosomal protein	0.454	0.263	0.712	2.2e-42
UNIPROTKB|F1SJA1	244	F1SJA1 "40S ribosomal protein	0.461	0.270	0.742	5.9e-42
UNIPROTKB|D4A8N8	248	D4A8N8 "40S ribosomal protein	0.461	0.266	0.681	1.2e-41
WB|WBGene00004475	246	rps-6 [Caenorhabditis elegans	0.461	0.268	0.681	8.4e-41
UNIPROTKB|Q9NEN6	246	rps-6 "40S ribosomal protein S	0.461	0.268	0.681	8.4e-41

UNIPROTKB|Q7SC99 NCU08502 "40S ribosomal protein S6" [Neurospora crassa OR74A (taxid:367110)]

 Score = 288 (106.4 bits), Expect = 6.0e-48, Sum P(2) = 6.0e-48
 Identities = 53/68 (77%), Positives = 59/68 (86%)

Query:     1 MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQG 60
             MKLNISYPA G QKL+E+ DE KLR F +KRMG EVPAD +GDEWKGYI+RI+GGNDKQG
Sbjct:     1 MKLNISYPANGSQKLIEVEDERKLRHFIEKRMGAEVPADPLGDEWKGYILRITGGNDKQG 60

Query:    61 FPMKQGEI 68
             FPMKQG I
Sbjct:    61 FPMKQGVI 68

GO:0006364 "rRNA processing" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0042274 "ribosomal small subunit biogenesis" evidence=ISS

POMBASE|SPAC13G6.07c rps601 "40S ribosomal protein S6" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 264 (98.0 bits), Expect = 7.7e-48, Sum P(2) = 7.7e-48
 Identities = 57/80 (71%), Positives = 65/80 (81%)

Query:    63 MKQGE--IPGLTDTTIPRRLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKK 120
             +KQGE  IPGLTD T+P+RLGPKRASKIR+ FNLSKEDDVRQ+VI+R + PK  KEGKK 
Sbjct:   114 IKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPK--KEGKKP 171

Query:   121 VRKLYKAPKIQRLITPVTLQ 140
               K   APKIQRL+TP TLQ
Sbjct:   172 YTK---APKIQRLVTPRTLQ 188

GO:0002181 "cytoplasmic translation" evidence=NAS

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006412 "translation" evidence=ISO

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISO

GO:0042254 "ribosome biogenesis" evidence=ISO

POMBASE|SPAPB1E7.12 rps602 "40S ribosomal protein S6 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 264 (98.0 bits), Expect = 7.7e-48, Sum P(2) = 7.7e-48
 Identities = 57/80 (71%), Positives = 65/80 (81%)

Query:    63 MKQGE--IPGLTDTTIPRRLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKK 120
             +KQGE  IPGLTD T+P+RLGPKRASKIR+ FNLSKEDDVRQ+VI+R + PK  KEGKK 
Sbjct:   114 VKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPK--KEGKKP 171

Query:   121 VRKLYKAPKIQRLITPVTLQ 140
               K   APKIQRL+TP TLQ
Sbjct:   172 YTK---APKIQRLVTPRTLQ 188

GO:0002181 "cytoplasmic translation" evidence=NAS

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006412 "translation" evidence=ISO

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISO

GO:0042254 "ribosome biogenesis" evidence=ISO

UNIPROTKB|J9NV22 J9NV22 "40S ribosomal protein S6" [Canis lupus familiaris (taxid:9615)]

 Score = 273 (101.2 bits), Expect = 5.3e-47, Sum P(2) = 5.3e-47
 Identities = 48/65 (73%), Positives = 56/65 (86%)

Query:     1 MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQG 60
             MKLNIS+PATGCQKL+E+ D  KLR FY+K M  EV AD++G+EWKGY+VRIS GNDKQG
Sbjct:     1 MKLNISFPATGCQKLIEVDDARKLRTFYEKHMATEVAADALGEEWKGYVVRISSGNDKQG 60

Query:    61 FPMKQ 65
             FPMKQ
Sbjct:    61 FPMKQ 65

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|G4N9W9 MGG_03236 "40S ribosomal protein S6" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 265 (98.3 bits), Expect = 9.7e-46, Sum P(2) = 9.7e-46
 Identities = 50/73 (68%), Positives = 59/73 (80%)

Query:     1 MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQG 60
             MK NIS P+TG QKLVE+ DE KLR F +KRMG EV A+ +GDEWKGYI++I+GGNDKQG
Sbjct:     1 MKFNISNPSTGAQKLVEVEDERKLRFFMEKRMGAEVSAEPLGDEWKGYILKITGGNDKQG 60

Query:    61 FPMKQGEI-PGLT 72
             FPMKQG + P  T
Sbjct:    61 FPMKQGVLLPNRT 73

GO:0043581 "mycelium development" evidence=IEP

UNIPROTKB|J9P449 J9P449 "40S ribosomal protein S6" [Canis lupus familiaris (taxid:9615)]

 Score = 256 (95.2 bits), Expect = 2.2e-42, Sum P(2) = 2.2e-42
 Identities = 47/66 (71%), Positives = 56/66 (84%)

Query:     1 MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQG 60
             MKLNIS+PATGCQKL+E+ D+ KL  FY K M  ++ AD++G EWKGYIV+ISGGNDKQG
Sbjct:     1 MKLNISFPATGCQKLIEV-DDQKLCTFYKKDMTTDIAADALGKEWKGYIVQISGGNDKQG 59

Query:    61 FPMKQG 66
             FPMKQG
Sbjct:    60 FPMKQG 65

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|F1SJA1 F1SJA1 "40S ribosomal protein S6" [Sus scrofa (taxid:9823)]

 Score = 271 (100.5 bits), Expect = 5.9e-42, Sum P(2) = 5.9e-42
 Identities = 49/66 (74%), Positives = 56/66 (84%)

Query:     1 MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQG 60
             MKLNIS+ ATGCQ L+E+ DE KL  FY KRM  EV AD++G+EWKGY+VRISGGNDKQG
Sbjct:     1 MKLNISFLATGCQNLIEVDDEQKLCTFYQKRMATEVAADTLGEEWKGYVVRISGGNDKQG 60

Query:    61 FPMKQG 66
             FPMKQG
Sbjct:    61 FPMKQG 66

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|D4A8N8 D4A8N8 "40S ribosomal protein S6" [Rattus norvegicus (taxid:10116)]

 Score = 259 (96.2 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
 Identities = 45/66 (68%), Positives = 55/66 (83%)

Query:     1 MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQG 60
             MKLNIS+ ATGCQKL+++ DE  L  FY+K M  E  AD++G++WKGY+VRISGGNDKQG
Sbjct:     1 MKLNISFSATGCQKLIQVDDECNLSTFYEKHMATEAAADALGEDWKGYVVRISGGNDKQG 60

Query:    61 FPMKQG 66
             FPMKQG
Sbjct:    61 FPMKQG 66

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

WB|WBGene00004475 rps-6 [Caenorhabditis elegans (taxid:6239)]

 Score = 258 (95.9 bits), Expect = 8.4e-41, Sum P(2) = 8.4e-41
 Identities = 45/66 (68%), Positives = 55/66 (83%)

Query:     1 MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQG 60
             M+LN +YPATG QK  E+ +E KLR+F++KRM  EV  D++GDEWKGY+VRI GGNDKQG
Sbjct:     1 MRLNFAYPATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQG 60

Query:    61 FPMKQG 66
             FPMKQG
Sbjct:    61 FPMKQG 66

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0000003 "reproduction" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0018996 "molting cycle, collagen and cuticulin-based cuticle" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0009408 "response to heat" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

UNIPROTKB|Q9NEN6 rps-6 "40S ribosomal protein S6" [Caenorhabditis elegans (taxid:6239)]

 Score = 258 (95.9 bits), Expect = 8.4e-41, Sum P(2) = 8.4e-41
 Identities = 45/66 (68%), Positives = 55/66 (83%)

Query:     1 MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQG 60
             M+LN +YPATG QK  E+ +E KLR+F++KRM  EV  D++GDEWKGY+VRI GGNDKQG
Sbjct:     1 MRLNFAYPATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQG 60

Query:    61 FPMKQG 66
             FPMKQG
Sbjct:    61 FPMKQG 66

GO:0042274 "ribosomal small subunit biogenesis" evidence=IBA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IBA

GO:0006364 "rRNA processing" evidence=IBA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P47838	RS6_CHICK	No assigned EC number	0.5388	0.9300	0.5341	yes	N/A
P05752	RS6A_SCHPO	No assigned EC number	0.5129	0.9440	0.5648	yes	N/A
Q5E995	RS6_BOVIN	No assigned EC number	0.5388	0.9300	0.5341	yes	N/A
P62754	RS6_MOUSE	No assigned EC number	0.5440	0.9300	0.5341	yes	N/A
P62755	RS6_RAT	No assigned EC number	0.5440	0.9300	0.5341	yes	N/A
P62753	RS6_HUMAN	No assigned EC number	0.5440	0.9300	0.5341	yes	N/A
O01727	RS6_BRAFL	No assigned EC number	0.5440	0.9370	0.5491	yes	N/A
P29327	RS6_DROME	No assigned EC number	0.5595	0.9370	0.5403	yes	N/A
Q9C0Z7	RS6B_SCHPO	No assigned EC number	0.5129	0.9440	0.5648	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	143
PTZ00028	218	PTZ00028, PTZ00028, 40S ribosomal protein S6e; Pro	5e-44
pfam01092	127	pfam01092, Ribosomal_S6e, Ribosomal protein S6e	4e-34
COG2125	120	COG2125, RPS6A, Ribosomal protein S6E (S10) [Trans	8e-16
PRK04290	115	PRK04290, PRK04290, 30S ribosomal protein S6e; Val	8e-06

>gnl|CDD|185404 PTZ00028, PTZ00028, 40S ribosomal protein S6e; Provisional

 Score =  143 bits (362), Expect = 5e-44
 Identities = 89/196 (45%), Positives = 105/196 (53%), Gaps = 69/196 (35%)

Query: 1   MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQG 60
           MKLNI+ P TG QK +EI DE KL  F++KR+G EVP DS+GDE+KGYI +ISGGNDKQG
Sbjct: 1   MKLNIANPFTGLQKCIEIDDEKKLLPFFEKRIGAEVPGDSLGDEFKGYIFKISGGNDKQG 60

Query: 61  FPMKQGEIPGLTDTTI------------PRRLG--------------------------- 81
           FPM QG    LT+  +            PRR G                           
Sbjct: 61  FPMMQGV---LTNNRVRLLFRKGMKCYRPRRTGEMKRKSVRGCIVGHDLSVLNLVLVKKG 117

Query: 82  -----------------PKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKL 124
                            PKRASKIRKLFNLSK DDVR++V++R +      EGK K    
Sbjct: 118 PQEIPGLTDGERPRRLGPKRASKIRKLFNLSKSDDVRKFVVRRKI------EGKNKT--- 168

Query: 125 YKAPKIQRLITPVTLQ 140
            KAPKIQRL+TP  LQ
Sbjct: 169 -KAPKIQRLVTPQRLQ 183

Length = 218

>gnl|CDD|110116 pfam01092, Ribosomal_S6e, Ribosomal protein S6e

 Score =  115 bits (289), Expect = 4e-34
 Identities = 50/66 (75%), Positives = 60/66 (90%)

Query: 1  MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQG 60
          MKLN+S PATGCQKL+E+ DEH+LRVFY+KRMG EV  D++GDE KGY++RI+GGNDKQG
Sbjct: 1  MKLNVSDPATGCQKLIEVDDEHRLRVFYEKRMGQEVDGDAVGDELKGYVLRITGGNDKQG 60

Query: 61 FPMKQG 66
          FPMKQG
Sbjct: 61 FPMKQG 66

Length = 127

>gnl|CDD|225036 COG2125, RPS6A, Ribosomal protein S6E (S10) [Translation, ribosomal structure and biogenesis]

 Score = 68.1 bits (167), Expect = 8e-16
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 3/70 (4%)

Query: 1  MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQG 60
           K+ IS P TG     EI DE + R    K++G EV    +G E+  Y ++I+GG+DK G
Sbjct: 4  FKVVISDPKTGRAYQFEI-DEARARRLIGKKIGDEVDGVIVGLEF-EYKLKITGGSDKDG 61

Query: 61 FPMKQGEIPG 70
          FPM+   +PG
Sbjct: 62 FPMRPD-VPG 70

Length = 120

>gnl|CDD|235271 PRK04290, PRK04290, 30S ribosomal protein S6e; Validated

 Score = 41.8 bits (99), Expect = 8e-06
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 2  KLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQGF 61
          K+ +S P TG    +EI      R    K++G E+    +G    GY ++I+GG+DK GF
Sbjct: 5  KVVVSDPKTGKAYQIEIDGAEANR-LIGKKIGDEIDGSIVG--LDGYKLKITGGSDKSGF 61

Query: 62 PMKQGEIPG 70
          PM+  ++PG
Sbjct: 62 PMR-PDVPG 69

Length = 115

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	143
KOG1646|consensus	237		100.0
PTZ00028	218	40S ribosomal protein S6e; Provisional	100.0
PF01092	127	Ribosomal_S6e: Ribosomal protein S6e; InterPro: IP	100.0
PRK04290	115	30S ribosomal protein S6e; Validated	99.97
COG2125	120	RPS6A Ribosomal protein S6E (S10) [Translation, ri	99.93

>KOG1646|consensus

Probab=100.00  E-value=1.8e-71  Score=452.26  Aligned_cols=136  Identities=79%  Similarity=1.236  Sum_probs=133.9

Q ss_pred             CeEEeecCCCCeeEEEEecCcccccccccccccceecCCccCCcccccEEEEcCccCCCCcccccC--------------
Q psy17954          1 MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQGFPMKQG--------------   66 (143)
Q Consensus         1 MKlnIS~P~tG~qk~ievdde~~l~~f~gKrig~ev~g~~lG~e~kGY~~~ItGGnDkqGFPMkqG--------------   66 (143)
                      ||||||||+||||++|||||+++|+.||+|+||+||+||+||+||+||+|+||||||+|||||+||              
T Consensus         1 mkln~s~p~~g~qk~~Eidde~klR~fydKrm~qev~~d~lGeE~kGyv~~I~GGndkQGFPMkqGvLt~~RvrlLL~kg   80 (237)
T KOG1646|consen    1 MKLNISYPATGCQKLFEIDDERKLRTFYDKRMGQEVAGDALGEEFKGYVFRITGGNDKQGFPMKQGVLTPGRVRLLLSKG   80 (237)
T ss_pred             CcccccccccccceeeeechHHHHHHHHHHhhhhhhccchhchhhceEEEEEcCCccccCCcccccccccchhhhhhhcC
Confidence            999999999999999999999999999999999999999999999999999999999999999999              


Q ss_pred             ---------------------------------------CCCCCcccCCCCcCCCcchhhhhcccCCCcCCCceeeEEee
Q psy17954         67 ---------------------------------------EIPGLTDTTIPRRLGPKRASKIRKLFNLSKEDDVRQYVIKR  107 (143)
Q Consensus        67 ---------------------------------------dIpGltd~~vPr~lgpKRaskIRKLf~lsk~ddv~~yvvrr  107 (143)
                                                             |||||||+++|++|||||||+||||||||+||||++||||+
T Consensus        81 ~scyRpRr~GeRkRKSVRGcIV~anlsvLnLvIvKkGekdipGLTdt~~P~rlGPkRaskIrKlfnLskEddvr~~vir~  160 (237)
T KOG1646|consen   81 HSCYRPRRTGERKRKSVRGCIVSANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASKIRKLFNLSKEDDVRQYVIRR  160 (237)
T ss_pred             ccccccccccccccccccceeecccceeeeeeEeccCcccCCCccccccccccCchhhHHHHHHhCCCccccceeeEEec
Confidence                                                   99999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCccccccccCCCcccccCcccccccC
Q psy17954        108 TLPPKPAKEGKKKVRKLYKAPKIQRLITPVTLQVSG  143 (143)
Q Consensus       108 ~~~~~~~k~gkk~~~~~~kapKIqrlvtp~~lq~k~  143 (143)
                      ++    +++|+|   |+||||||||||||.+||||+
T Consensus       161 ~~----~~~~~k---~~tkaPKIqrlvtp~~lqrk~  189 (237)
T KOG1646|consen  161 PL----TKEGKK---PKTKAPKIQRLVTPRRLQRKR  189 (237)
T ss_pred             cc----cccCCC---ccccCcchhhccchHHHHhhh
Confidence            99    589999   999999999999999999985

>PTZ00028 40S ribosomal protein S6e; Provisional

Probab=100.00  E-value=8.1e-69  Score=437.77  Aligned_cols=133  Identities=71%  Similarity=1.101  Sum_probs=129.5

Q ss_pred             CeEEeecCCCCeeEEEEecCcccccccccccccceecCCccCCcccccEEEEcCccCCCCcccccC--------------
Q psy17954          1 MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQGFPMKQG--------------   66 (143)
Q Consensus         1 MKlnIS~P~tG~qk~ievdde~~l~~f~gKrig~ev~g~~lG~e~kGY~~~ItGGnDkqGFPMkqG--------------   66 (143)
                      ||||||||+||+||+||||||++|+.|||++||+||+|++||+||+||+|+||||||+|||||+||              
T Consensus         1 MKlnIsdP~tG~qk~iEidde~~l~~f~gkrIG~EVdg~~lG~e~kGY~lkITGGsDkqGfPMkqgV~~~~RvrlLL~kG   80 (218)
T PTZ00028          1 MKLNIANPFTGLQKCIEIDDEKKLLPFFEKRIGAEVPGDSLGDEFKGYIFKISGGNDKQGFPMMQGVLTNNRVRLLFRKG   80 (218)
T ss_pred             CeEEEecCCCCeeEEEEecCHHHhhhhhcccccceecccccCcccCCcEEEEecccCCCCcccCCCccCCceEEEEecCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999              


Q ss_pred             ---------------------------------------CCCCCcccCCCCcCCCcchhhhhcccCCCcCCCceeeEEee
Q psy17954         67 ---------------------------------------EIPGLTDTTIPRRLGPKRASKIRKLFNLSKEDDVRQYVIKR  107 (143)
Q Consensus        67 ---------------------------------------dIpGltd~~vPr~lgpKRaskIRKLf~lsk~ddv~~yvvrr  107 (143)
                                                             +||||||+++|++|||||||+|||||||||+|||++|||||
T Consensus        81 ~~gyrprr~GeRkRKsVRGciVs~dis~lNlvIvk~Ge~~i~gLtd~~~prrlgPkraskirklfnlsk~ddvrk~virr  160 (218)
T PTZ00028         81 MKCYRPRRTGEMKRKSVRGCIVGHDLSVLNLVLVKKGPQEIPGLTDGERPRRLGPKRASKIRKLFNLSKSDDVRKFVVRR  160 (218)
T ss_pred             CCCCCcCCCCcceeeeeeeeeecCCceEEEEEEEecCCccChhhccCcCCccCCCcchhhhHHHhCCCccCChhhceecc
Confidence                                                   89999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCccccccccCCCcccccCcccccccC
Q psy17954        108 TLPPKPAKEGKKKVRKLYKAPKIQRLITPVTLQVSG  143 (143)
Q Consensus       108 ~~~~~~~k~gkk~~~~~~kapKIqrlvtp~~lq~k~  143 (143)
                      ++      +|||    ++|||||||||||.+||||+
T Consensus       161 ~~------~gkk----~~KapKIQRLiTp~~lqrKr  186 (218)
T PTZ00028        161 KI------EGKN----KTKAPKIQRLVTPQRLQRKR  186 (218)
T ss_pred             cc------CCCC----CCcCCceeecCCHHHHHHHH
Confidence            99      5766    49999999999999999984

>PF01092 Ribosomal_S6e: Ribosomal protein S6e; InterPro: IPR001377 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=1.5e-35  Score=225.81  Aligned_cols=89  Identities=54%  Similarity=0.862  Sum_probs=66.2

Q ss_pred             CeEEeecCCCCeeEEEEecCcccccccccccccceecCCccCCcccccEEEEcCccCCCCcccccCCCCCCccc------
Q psy17954          1 MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQGFPMKQGEIPGLTDT------   74 (143)
Q Consensus         1 MKlnIS~P~tG~qk~ievdde~~l~~f~gKrig~ev~g~~lG~e~kGY~~~ItGGnDkqGFPMkqGdIpGltd~------   74 (143)
                      ||||||||+||+||+|||+|++++++||||+||+||+|++||+||+||+|+||||||+|||||+| +|+|....      
T Consensus         1 mKl~isdP~tG~~~~iei~~~~~~~~f~gkrig~evdg~~lG~e~~Gy~~kItGGsD~~GfPMr~-~v~~~~rvr~Ll~~   79 (127)
T PF01092_consen    1 MKLNISDPKTGKQKQIEIDDERALRPFYGKRIGDEVDGDILGEELKGYKLKITGGSDKQGFPMRQ-GVLGPGRVRLLLSK   79 (127)
T ss_dssp             -EEEEEETTTTEEEEEE--SHHHHCCCTT-BTT-EEETCCGTTTSSS-EEEEEEEEECCC-BB-T-T---SSEEEEEE-T
T ss_pred             CEEEEEcCCCCEEEEEEeCchHHhhHhhhcchheeEeeeecCccccccEEEEecccCCCCceeec-CCCCcceEEEEEeC
Confidence            99999999999999999999999999999999999999999999999999999999999999999 88885331      


Q ss_pred             ----CCCCcCCCcchhhhhc
Q psy17954         75 ----TIPRRLGPKRASKIRK   90 (143)
Q Consensus        75 ----~vPr~lgpKRaskIRK   90 (143)
                          ..|++.|.+|...+|-
T Consensus        80 G~~gyrp~r~GeRrRKsVRG   99 (127)
T PF01092_consen   80 GGPGYRPRRKGERRRKSVRG   99 (127)
T ss_dssp             TBTTB--SSTT--EEEEEE-
T ss_pred             CCcccccCcCCeEeeeeeec
Confidence                3477777777666665

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeal ribosomal proteins have been grouped on the basis of sequence similarities. Ribosomal protein S6 is the major substrate of protein kinases in eukaryotic ribosomes [] and may play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZM_Y 2XZN_Y 3U5C_G 3U5G_G 3J16_C.

>PRK04290 30S ribosomal protein S6e; Validated

Probab=99.97  E-value=5.7e-33  Score=208.78  Aligned_cols=88  Identities=33%  Similarity=0.613  Sum_probs=77.5

Q ss_pred             CeEEeecCCCCeeEEEEecCcccccccccccccceecCCccCCcccccEEEEcCccCCCCcccccCCCCCCccc------
Q psy17954          1 MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQGFPMKQGEIPGLTDT------   74 (143)
Q Consensus         1 MKlnIS~P~tG~qk~ievdde~~l~~f~gKrig~ev~g~~lG~e~kGY~~~ItGGnDkqGFPMkqGdIpGltd~------   74 (143)
                      ||||||||+||+||+|||+|+.+++ |||++||+||+|++||+  +||+|+||||||+|||||+| +|+|....      
T Consensus         4 ~Kl~IsdP~tG~~~~~ei~~~~~~~-f~gkriG~evdg~~lG~--~Gy~l~ItGGsDk~GfPM~~-~v~~~~r~rlLl~~   79 (115)
T PRK04290          4 FKVVVSDPKTGKAYQIEIDGAEANR-LIGKKIGDEIDGSIVGL--DGYKLKITGGSDKSGFPMRP-DVPGPVRRRILLSG   79 (115)
T ss_pred             eEEEEEcCCCCeEEEEEeCcHHHhh-hhccccccEEccceeCC--CCeEEEEecccCCCCccccC-CccCCceEEEEecC
Confidence            8999999999999999999999865 99999999999999999  59999999999999999999 88885443      


Q ss_pred             ---CCCCcCCCcchhhhhccc
Q psy17954         75 ---TIPRRLGPKRASKIRKLF   92 (143)
Q Consensus        75 ---~vPr~lgpKRaskIRKLf   92 (143)
                         ..|++.|.+|...+|=..
T Consensus        80 g~gyrp~r~GeRrRKsVRG~~  100 (115)
T PRK04290         80 GPGFRPKEKGERRRKTVRGNT  100 (115)
T ss_pred             CCCCCcCCCCcEEEEEEEccE
Confidence               337778888776666544

>COG2125 RPS6A Ribosomal protein S6E (S10) [Translation, ribosomal structure and biogenesis]

Probab=99.93  E-value=1.2e-26  Score=175.30  Aligned_cols=86  Identities=37%  Similarity=0.674  Sum_probs=73.7

Q ss_pred             CeEEeecCCCCeeEEEEecCcccccccccccccceecCCccCCcccccEEEEcCccCCCCcccccCCCCCCccc------
Q psy17954          1 MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQGFPMKQGEIPGLTDT------   74 (143)
Q Consensus         1 MKlnIS~P~tG~qk~ievdde~~l~~f~gKrig~ev~g~~lG~e~kGY~~~ItGGnDkqGFPMkqGdIpGltd~------   74 (143)
                      ||++||||++|.|+++||+++.+ +.|+|++||+||||.++|++|. |+|+||||||++||||++ |+||....      
T Consensus         4 ~kvvisdp~~G~~~~~ei~~~~a-~~ligkkIGd~~dG~~vg~~~~-yk~kItGGsD~~GfPMr~-dv~g~~r~riLls~   80 (120)
T COG2125           4 FKVVISDPKTGRAYQFEIDEARA-RRLIGKKIGDEVDGVIVGLEFE-YKLKITGGSDKDGFPMRP-DVPGPRRVRILLSG   80 (120)
T ss_pred             cEEEEeccCcceeeeeeechhhh-hhhhhheeccccCCcEeccccc-EEEEEeCCcCCCCCcccC-CCCCcceEEEEecc
Confidence            79999999999999999997776 8899999999999999999965 999999999999999999 99996443      


Q ss_pred             ---CCCCcCCCcchhhhh
Q psy17954         75 ---TIPRRLGPKRASKIR   89 (143)
Q Consensus        75 ---~vPr~lgpKRaskIR   89 (143)
                         ..|++.|.+|...+|
T Consensus        81 ~~GyrP~~~GeRrRKtVR   98 (120)
T COG2125          81 GPGYRPRRKGERKRKTVR   98 (120)
T ss_pred             CCCcCCCCCCceeeeeec
Confidence               335666665544444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	143
3u5c_G	236	The Structure Of The Eukaryotic Ribosome At 3.0 A R		4e-41
2xzm_Y	293	Crystal Structure Of The Eukaryotic 40s Ribosomal S		3e-33
3zey_3	250	High-resolution Cryo-electron Microscopy Structure		1e-27

>pdb|3U5C|G Chain G, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome A Length = 236

Iteration: 1
 Score =  162 bits (411), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 90/193 (46%), Positives = 108/193 (55%), Gaps = 61/193 (31%)
Query: 1   MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQG 60
           MKLNISYP  G QK  EI DEH++RVF+DKR+G EV  +++GDE+KGY+ +ISGGNDKQG
Sbjct: 1   MKLNISYPVNGSQKTFEIDDEHRIRVFFDKRIGQEVDGEAVGDEFKGYVFKISGGNDKQG 60
Query: 61  FPMKQG-----------------------------------------------------E 67
           FPMKQG                                                     E
Sbjct: 61  FPMKQGVLLPTRIKLLLTKNVSCYRPRRDGERKRKSVRGAIVGPDLAVLALVIVKKGEQE 120
Query: 68  IPGLTDTTIPRRLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKA 127
           + GLTDTT+P+RLGPKRA+ IRK F LSKEDDVR +VI+R        E  K  +   KA
Sbjct: 121 LEGLTDTTVPKRLGPKRANNIRKFFGLSKEDDVRDFVIRR--------EVTKGEKTYTKA 172
Query: 128 PKIQRLITPVTLQ 140
           PKIQRL+TP  LQ
Sbjct: 173 PKIQRLVTPQRLQ 185

>pdb|2XZM|Y Chain Y, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 293

Iteration: 1
 Score =  137 bits (344), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 84/192 (43%), Positives = 103/192 (53%), Gaps = 63/192 (32%)
Query: 1   MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQG 60
           MK NISYP TG QK +EI D+ K  +F DK+MG EV  D++GDE+KGY+ +I+GGNDK G
Sbjct: 1   MKFNISYPLTGAQKCIEIDDDKKCNIFMDKKMGQEVEGDTLGDEFKGYVFKIAGGNDKDG 60
Query: 61  FPMKQG-----------------------------------------------------E 67
           FPMKQG                                                     E
Sbjct: 61  FPMKQGVMVRGRVRLLLSEGHSCFTSRRSGFRKRKSVRGCIVGPDMRVLALQIVKKGVAE 120
Query: 68  IPGLTDTTIPRRLGPKRASKIRKLFNLSKEDD---VRQYVIKRTLPPKPAKEGKKKVRKL 124
           I GLT  T+PR+LGPKRA+ I+KLF L KEDD   +++ VI+RT   K AK GK +    
Sbjct: 121 IDGLTTVTLPRKLGPKRANNIKKLFGLKKEDDPILIKKSVIRRTF--KTAK-GKDRT--- 174
Query: 125 YKAPKIQRLITP 136
            K PKIQRLITP
Sbjct: 175 -KCPKIQRLITP 185

>pdb|3ZEY|3 Chain 3, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 250

Iteration: 1
 Score =  118 bits (295), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/192 (40%), Positives = 97/192 (50%), Gaps = 63/192 (32%)
Query: 1   MKLNISYPATGCQKLVEIADEHKLRV-FYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQ 59
           MKLN++YP  G  K VE+ DE   RV   D R+G EV     G+ ++GY  ++ GG+DK+
Sbjct: 1   MKLNVAYPRNGTVKQVEVTDEVLRRVNLGDYRLGNEVDGAIFGEAFRGYTFKLRGGSDKE 60
Query: 60  GFPM--------------------------KQGE-------------------------- 67
           GFPM                           QGE                          
Sbjct: 61  GFPMVQGVMAPSRVSLLVKRGAVGFNTFRGYQGERRRKSLRGCILGSDIAVLNVTVEKVG 120
Query: 68  ---IPGLTDTTIPRRLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKL 124
              I G+TD ++PRRLGPKRA+KIRKLFNL + DDVR+YVI+R    K  KEGKK     
Sbjct: 121 EQPIEGVTDVSVPRRLGPKRANKIRKLFNLGRTDDVRKYVIRR----KVTKEGKK---DR 173
Query: 125 YKAPKIQRLITP 136
           +KAPKIQRLIT 
Sbjct: 174 FKAPKIQRLITS 185

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	143
3u5c_G	236	RP9, S10, YS4, 40S ribosomal protein S6-A; transla	9e-42
2xzm_Y	293	RPS6E; ribosome, translation; 3.93A {Tetrahymena t	3e-39

>3u5c_G RP9, S10, YS4, 40S ribosomal protein S6-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3j16_C 3u5g_G Length = 236

 Score =  137 bits (347), Expect = 9e-42
 Identities = 90/193 (46%), Positives = 109/193 (56%), Gaps = 61/193 (31%)

Query: 1   MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQG 60
           MKLNISYP  G QK  EI DEH++RVF+DKR+G EV  +++GDE+KGY+ +ISGGNDKQG
Sbjct: 1   MKLNISYPVNGSQKTFEIDDEHRIRVFFDKRIGQEVDGEAVGDEFKGYVFKISGGNDKQG 60

Query: 61  FPMKQG-----------------------------------------------------E 67
           FPMKQG                                                     E
Sbjct: 61  FPMKQGVLLPTRIKLLLTKNVSCYRPRRDGERKRKSVRGAIVGPDLAVLALVIVKKGEQE 120

Query: 68  IPGLTDTTIPRRLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKA 127
           + GLTDTT+P+RLGPKRA+ IRK F LSKEDDVR +VI+R        +G+K      KA
Sbjct: 121 LEGLTDTTVPKRLGPKRANNIRKFFGLSKEDDVRDFVIRR-----EVTKGEKTY---TKA 172

Query: 128 PKIQRLITPVTLQ 140
           PKIQRL+TP  LQ
Sbjct: 173 PKIQRLVTPQRLQ 185

>2xzm_Y RPS6E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Y Length = 293

 Score =  133 bits (334), Expect = 3e-39
 Identities = 80/196 (40%), Positives = 100/196 (51%), Gaps = 63/196 (32%)

Query: 1   MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQG 60
           MK NISYP TG QK +EI D+ K  +F DK+MG EV  D++GDE+KGY+ +I+GGNDK G
Sbjct: 1   MKFNISYPLTGAQKCIEIDDDKKCNIFMDKKMGQEVEGDTLGDEFKGYVFKIAGGNDKDG 60

Query: 61  FPMKQG-----------------------------------------------------E 67
           FPMKQG                                                     E
Sbjct: 61  FPMKQGVMVRGRVRLLLSEGHSCFTSRRSGFRKRKSVRGCIVGPDMRVLALQIVKKGVAE 120

Query: 68  IPGLTDTTIPRRLGPKRASKIRKLFNLSKEDD---VRQYVIKRTLPPKPAKEGKKKVRKL 124
           I GLT  T+PR+LGPKRA+ I+KLF L KEDD   +++ VI+RT      K+        
Sbjct: 121 IDGLTTVTLPRKLGPKRANNIKKLFGLKKEDDPILIKKSVIRRTFKTAKGKDR------- 173

Query: 125 YKAPKIQRLITPVTLQ 140
            K PKIQRLITP  + 
Sbjct: 174 TKCPKIQRLITPERIL 189

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	143
3u5c_G	236	RP9, S10, YS4, 40S ribosomal protein S6-A; transla	100.0
2xzm_Y	293	RPS6E; ribosome, translation; 3.93A {Tetrahymena t	100.0
3j20_G	125	30S ribosomal protein S6E; archaea, archaeal, KINK	100.0

>3u5c_G RP9, S10, YS4, 40S ribosomal protein S6-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3j16_C 3u5g_G

Probab=100.00  E-value=2.9e-72  Score=461.26  Aligned_cols=135  Identities=67%  Similarity=1.119  Sum_probs=132.4

Q ss_pred             CeEEeecCCCCeeEEEEecCcccccccccccccceecCCccCCcccccEEEEcCccCCCCcccccC--------------
Q psy17954          1 MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQGFPMKQG--------------   66 (143)
Q Consensus         1 MKlnIS~P~tG~qk~ievdde~~l~~f~gKrig~ev~g~~lG~e~kGY~~~ItGGnDkqGFPMkqG--------------   66 (143)
                      ||||||||+|||||+||||||++|++|||++||+||+|++||+||+||+|+||||||+|||||+||              
T Consensus         1 mKlnIS~P~tG~qk~iEvdde~kl~~f~gKrig~EV~gd~lG~e~kGY~~kItGGnDkqGFPMkqgVl~~~rvrlLLskG   80 (236)
T 3u5c_G            1 MKLNISYPVNGSQKTFEIDDEHRIRVFFDKRIGQEVDGEAVGDEFKGYVFKISGGNDKQGFPMKQGVLLPTRIKLLLTKN   80 (236)
T ss_dssp             CEEEEEETTTTEEEEEECCCHHHHGGGTTCBTTCEEESGGGCSSSSSCEEEEEEEEEGGGCBBCTTCCCSSEEEEEECSS
T ss_pred             CeEEEEcCCCceEEEEEeCChHHhhhhhcccccceechhccCcccCCcEEEEecccCCCCccccCCcCCCceEEEEecCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999              


Q ss_pred             ---------------------------------------CCCCCcccCCCCcCCCcchhhhhcccCCCcCCCceeeEEee
Q psy17954         67 ---------------------------------------EIPGLTDTTIPRRLGPKRASKIRKLFNLSKEDDVRQYVIKR  107 (143)
Q Consensus        67 ---------------------------------------dIpGltd~~vPr~lgpKRaskIRKLf~lsk~ddv~~yvvrr  107 (143)
                                                             |||||||+++|++|||||||+|||||||||+||||+||||+
T Consensus        81 ~~~yrprr~GERkRKsVRGciV~~~is~lNlvIVkkGek~IpgLtd~~~p~~lgPKRas~irklfnlsk~ddVr~yvvrr  160 (236)
T 3u5c_G           81 VSCYRPRRDGERKRKSVRGAIVGPDLAVLALVIVKKGEQELEGLTDTTVPKRLGPKRANNIRKFFGLSKEDDVRDFVIRR  160 (236)
T ss_dssp             BTTBCCSSTTCCEEEEEECSBCCTTEEEEEEEEEECCSSCCHHHHTCCCCCSCCCCBHHHHHHHHTCTTTSCSSSSSCCE
T ss_pred             CCccCCCCCCceeeeeeeeeEecCCceeEEEEEEecCCccCccccCcccccccCCchhhhhHHHhCCCcccchhheeeee
Confidence                                                   89999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCccccccccCCCcccccCcccccccC
Q psy17954        108 TLPPKPAKEGKKKVRKLYKAPKIQRLITPVTLQVSG  143 (143)
Q Consensus       108 ~~~~~~~k~gkk~~~~~~kapKIqrlvtp~~lq~k~  143 (143)
                      ||    + +|+|   +++|||||||||||++||||+
T Consensus       161 ~l----~-~gkk---~~~kapKIQrlvtp~~lqrk~  188 (236)
T 3u5c_G          161 EV----T-KGEK---TYTKAPKIQRLVTPQRLQRKR  188 (236)
T ss_dssp             EE----E-CSSC---EEEECCCCBSCCCHHHHHHHH
T ss_pred             ec----c-cCCC---CCCCCCCccccCCHHHHHHHH
Confidence            99    3 8999   999999999999999999974

>2xzm_Y RPS6E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Y

Probab=100.00  E-value=1.2e-68  Score=449.47  Aligned_cols=136  Identities=59%  Similarity=0.978  Sum_probs=133.3

Q ss_pred             CeEEeecCCCCeeEEEEecCcccccccccccccceecCCccCCcccccEEEEcCccCCCCcccccC--------------
Q psy17954          1 MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGDEWKGYIVRISGGNDKQGFPMKQG--------------   66 (143)
Q Consensus         1 MKlnIS~P~tG~qk~ievdde~~l~~f~gKrig~ev~g~~lG~e~kGY~~~ItGGnDkqGFPMkqG--------------   66 (143)
                      ||||||||+||||++|||||+++++.|||++||+||+|++||+||+||+|+||||||+|||||+||              
T Consensus         1 mKLnISdP~tG~qk~iEIdde~klr~f~gKrIG~EVdgd~LGeE~kGYvlkITGGnDkqGFPMkqgVl~~~RvrLLLskG   80 (293)
T 2xzm_Y            1 MKFNISYPLTGAQKCIEIDDDKKCNIFMDKKMGQEVEGDTLGDEFKGYVFKIAGGNDKDGFPMKQGVMVRGRVRLLLSEG   80 (293)
T ss_dssp             CEEEEEETTTTEEEEEECCSHHHHTTTTTCCTTCEEETTSCTTTCSSCEEEEEEEEETTSCBBCTTCCCSSEEEEEECTT
T ss_pred             CeEEEecCCCceEEEEEeccHHHHHHHhhccccceEcccccccccCCcEEEEecccCCCCccccCCccCCceEEEEecCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999              


Q ss_pred             ---------------------------------------CCCCCcccCCCCcCCCcchhhhhcccCCCcCCC---ceeeE
Q psy17954         67 ---------------------------------------EIPGLTDTTIPRRLGPKRASKIRKLFNLSKEDD---VRQYV  104 (143)
Q Consensus        67 ---------------------------------------dIpGltd~~vPr~lgpKRaskIRKLf~lsk~dd---v~~yv  104 (143)
                                                             +||||||+++|++|||||||+||||||||++||   ||+||
T Consensus        81 ~sgYRPrr~GERKRKSVRGciVs~disqLNlvIVkkGek~IpgLTD~~~PrrlGPKRAskIRKlFnLsKeDD~~~VrkyV  160 (293)
T 2xzm_Y           81 HSCFTSRRSGFRKRKSVRGCIVGPDMRVLALQIVKKGVAEIDGLTTVTLPRKLGPKRANNIKKLFGLKKEDDPILIKKSV  160 (293)
T ss_dssp             CSSCCCSSSCCCEEEEEECSSCCTTEEEEEEEEEECCSSCCHHHHTCCCCCCCCCCSHHHHHHHHCCCTTCCHHHHHHTS
T ss_pred             CCCCCCCCCCceeeeeeeeeeecCCceeEEEEEEecCCccCccccCCcCCCCCCCchhhhhHHHhCCCcccchhhhhhhh
Confidence                                                   899999999999999999999999999999999   99999


Q ss_pred             EeecCCCCCCCCCCccccccccCCCcccccCcccccccC
Q psy17954        105 IKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVTLQVSG  143 (143)
Q Consensus       105 vrr~~~~~~~k~gkk~~~~~~kapKIqrlvtp~~lq~k~  143 (143)
                      ||+++    ++||+|   +++|||||||||||.+||||+
T Consensus       161 irr~~----~kegkk---~~~KaPKIQRLVTp~~lqrKr  192 (293)
T 2xzm_Y          161 IRRTF----KTAKGK---DRTKCPKIQRLITPERILRKK  192 (293)
T ss_dssp             CCEEE----ECTTSC---EEEECCCCTTCCCHHHHHHHH
T ss_pred             eeccc----cccCCc---ccccCCCccccCCHHHHHHHH
Confidence            99999    489999   999999999999999999984

>3j20_G 30S ribosomal protein S6E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=7.2e-36  Score=226.09  Aligned_cols=88  Identities=35%  Similarity=0.605  Sum_probs=76.9

Q ss_pred             CeEEeecCCCCeeEEEEecCcccccccccccccceecCCccCC--------cc-cccEEEEcCccCCCCcccccCCCCCC
Q psy17954          1 MKLNISYPATGCQKLVEIADEHKLRVFYDKRMGMEVPADSIGD--------EW-KGYIVRISGGNDKQGFPMKQGEIPGL   71 (143)
Q Consensus         1 MKlnIS~P~tG~qk~ievdde~~l~~f~gKrig~ev~g~~lG~--------e~-kGY~~~ItGGnDkqGFPMkqGdIpGl   71 (143)
                      ||||||||+|||||+||||||. +++||||+||+||+|++||+        || +||+|+||||||+|||||+| +++|.
T Consensus         4 ~Kl~Is~P~tG~qk~iEidde~-~~~f~gkrig~ev~g~~lG~~~~~~~~~e~~kGy~~~ItGG~DkqGFPMkq-gV~~~   81 (125)
T 3j20_G            4 FKLVISDPKSGIAKQVEITGAE-TEKLIGKRIGDQIPAKELNINLNELFGKEFPEDVKLEIRGGTDKDGFPMRP-DIHGP   81 (125)
T ss_dssp             EEEEEEETTTTEEEEEEECSTT-GGGTTTCCTTCEECSTTTCSSSCSSSSSCSCSCCCEEEEEEEETTCCBBCT-TCCSS
T ss_pred             eEEEEEcCCCCEEEEEEcCchh-hhhhccccceeEEeeeecCcccccccccccCCCcEEEEccCcCCCCccccC-CcCCC
Confidence            8999999999999999999996 59999999999999999999        99 99999999999999999999 88774


Q ss_pred             cc---------cCCCCcCCCcchhhhhc
Q psy17954         72 TD---------TTIPRRLGPKRASKIRK   90 (143)
Q Consensus        72 td---------~~vPr~lgpKRaskIRK   90 (143)
                      ..         -..|++.|.+|...+|-
T Consensus        82 ~rvrlLLskG~gyrprr~GeRkRKsVRG  109 (125)
T 3j20_G           82 RRVRVLLSKGPGFRPKEKGERRKKTVRG  109 (125)
T ss_dssp             SEEEEECCSSCSSCCCCSSCCCEEEEEC
T ss_pred             ceEEEEecCCCccCCCCCCcEeeEEeec
Confidence            32         13477777777655554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00