Psyllid ID: psy18164
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1212 | 2.2.26 [Sep-21-2011] | |||||||
| Q7ZUW2 | 980 | Hypoxia up-regulated prot | yes | N/A | 0.728 | 0.901 | 0.428 | 0.0 | |
| Q9JKR6 | 999 | Hypoxia up-regulated prot | yes | N/A | 0.725 | 0.879 | 0.410 | 0.0 | |
| Q63617 | 999 | Hypoxia up-regulated prot | yes | N/A | 0.698 | 0.847 | 0.415 | 0.0 | |
| Q9Y4L1 | 999 | Hypoxia up-regulated prot | yes | N/A | 0.725 | 0.879 | 0.405 | 0.0 | |
| Q5ZLK7 | 1002 | Hypoxia up-regulated prot | yes | N/A | 0.721 | 0.873 | 0.417 | 0.0 | |
| Q60432 | 999 | Hypoxia up-regulated prot | yes | N/A | 0.725 | 0.879 | 0.402 | 0.0 | |
| Q566I3 | 646 | Hypoxia up-regulated prot | N/A | N/A | 0.491 | 0.922 | 0.526 | 1e-175 | |
| Q0VA61 | 643 | Hypoxia up-regulated prot | no | N/A | 0.494 | 0.931 | 0.508 | 1e-171 | |
| F4JMJ1 | 867 | Heat shock 70 kDa protein | yes | N/A | 0.580 | 0.810 | 0.361 | 1e-103 | |
| Q10061 | 848 | Heat shock protein 70 hom | yes | N/A | 0.353 | 0.505 | 0.354 | 9e-74 |
| >sp|Q7ZUW2|HYOU1_DANRE Hypoxia up-regulated protein 1 OS=Danio rerio GN=hyou1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/977 (42%), Positives = 579/977 (59%), Gaps = 94/977 (9%)
Query: 260 KISLVTLCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTP 319
K+SL + VV L + +AVMSVDLGSEWMKVAIV PGVPMEI LNKES+RKTP
Sbjct: 4 KLSLWAIFCLVVAFLP--SQTESVAVMSVDLGSEWMKVAIVKPGVPMEIVLNKESRRKTP 61
Query: 320 TLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADE 379
V + ER FG+ A + + P Y + +LGK+ D+P V ++ FP + + DE
Sbjct: 62 VAVCLKENERLFGDGALGVAVKNPKVVYRFLQSILGKTADNPQVAEYQKHFPEHQLQKDE 121
Query: 380 ERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSML 439
+RGT+ FK ++ Y EEL+ M+L+ +R A A Q I +AVI VP YFNQ ER+++L
Sbjct: 122 KRGTVYFKFSEEMQYTPEELLGMILNYSRTLAQDFAEQPIKDAVITVPAYFNQAERRAVL 181
Query: 440 KAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVV 499
+A +AGLKVLQL+ND TAVALNYG+F+RKD N T ++MFYDMG+ STT +IV+YQ V
Sbjct: 182 QAAHIAGLKVLQLINDNTAVALNYGVFRRKDINSTAQ-NIMFYDMGSGSTTATIVTYQTV 240
Query: 500 KTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVA 559
KTKE G T PQ+ + GVG+DRTLGG EM++RLRD L K FNE KK+ KDV +N RA+A
Sbjct: 241 KTKESG---TQPQLQIRGVGFDRTLGGFEMELRLRDHLAKLFNEQKKSKKDVRDNLRAMA 297
Query: 560 KLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQAL 619
KL KEA RLK VLSAN EH AQIEGL+D+IDFK VTR+EFEAL EDLFDRV PV+QAL
Sbjct: 298 KLLKEAQRLKTVLSANAEHTAQIEGLMDDIDFKAKVTRSEFEALCEDLFDRVPGPVKQAL 357
Query: 620 KSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGV-ELSKNLNTDEAAALGAVYKAADLS 678
++ + MD I QVILVG TRVPKVQ+ + K VG ELSKN+N DEAAA+GAVY+AA LS
Sbjct: 358 AAAEMSMDEIEQVILVGGATRVPKVQDVLLKSVGKEELSKNINADEAAAMGAVYQAAALS 417
Query: 679 TGFKVKKFITKDIVLYPIQVEFERESESGD----TKIIKRMLFGPSNTYPQKKILTFNKY 734
FKVK F+ +D ++PIQVEF RE+E D K KR+LF YPQ+K++TFN+Y
Sbjct: 418 KAFKVKPFLVRDAAVFPIQVEFSRETEEEDGVKSLKHNKRILFQRMAPYPQRKVITFNRY 477
Query: 735 VGDFNFNVSYASEIEHLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFA 794
+ DF F ++Y ++ L+ + + + G++ ++ +SGV +F KH+ +AESKGIKAHF
Sbjct: 478 IDDFVFYINYG-DLSFLSEQDMKVFGSQNLTTVKLSGVGSSFKKHS--DAESKGIKAHFN 534
Query: 795 MDESGILSLVNIELVVE---KQEAAESPLSKLGNTLTSLF-----------SRSKTDE-- 838
MDESG+L L +E V E +++ ES L+KLGNT++SLF + TDE
Sbjct: 535 MDESGVLILDRVESVFETIVEEKEEESTLTKLGNTISSLFGGGSSEPSANVTEPVTDEEE 594
Query: 839 -------------------NEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKN-- 877
EKP E E AEE ++ E+Q ++ E +
Sbjct: 595 VTPEAGKEQDQPEKQEETVQEKPETEEGKEAEPQAEEQKEDKEKAENQGETESEKTEKPE 654
Query: 878 ---ATQTPDADKKPKI---VTVKEPISASETRYGVSTLNEKQVEKSLSKLDSLNQIEHAK 931
+ +AD KPK+ + I+ V + + +E S KL L + K
Sbjct: 655 EKTTDEEKEADMKPKLQKKSKISADIAVELEVNDVLDPSAEDMEGSKKKLQDLTDRDLEK 714
Query: 932 VRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADV 991
+EK LNSLE+ +F+ + KL +EY +V E + I ++ ++W++E+G+ A +
Sbjct: 715 QEREKTLNSLEAFIFETQDKLYQDEYQAVVTEEEKEQISGRLSVASSWMDEEGYRAGTKL 774
Query: 992 LENKLNEINSLVVPIWERHREHQERPEALKSLNNALNVSVTFYNSIKNLSLNTNETEDLN 1051
L+ KL+E+ L ++ R E ++ P+ L +L++ LN S F S + + E
Sbjct: 775 LKEKLSELKKLCKGMFFRVEERKKWPDRLAALDSMLNHSNIFLKSARLIP------ESDQ 828
Query: 1052 LFSDIELKSLDTLSMVWFRVCWGFFFLLFKQDKGLDTLINETKVWKEKSEKEQNQLKKSD 1111
+F+D+ELK+ L+ +INET WK ++ EQ +L +
Sbjct: 829 IFTDVELKT-------------------------LEKVINETITWKNETVAEQEKLSPTV 863
Query: 1112 PIVLTIRSIVEKIRALEREVRYLENKSKLWMASLNKKKESTSKKKEDKPKNK--DSDKTK 1169
VL + I K+ L+REV YL NK+K K + + E N D++K
Sbjct: 864 KPVLLSKDIEAKLSLLDREVNYLLNKAKFAKPKPKDKAKDKNSTSESSKANSTDDAEKVI 923
Query: 1170 PSETEQS----KPEEQP 1182
P +TE KP E+P
Sbjct: 924 PPKTEDGAEKVKPAEEP 940
|
Has a pivotal role in cytoprotective cellular mechanisms triggered by oxygen deprivation (By similarity). May play a role as a molecular chaperone and participate in protein folding. Danio rerio (taxid: 7955) |
| >sp|Q9JKR6|HYOU1_MOUSE Hypoxia up-regulated protein 1 OS=Mus musculus GN=Hyou1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/993 (41%), Positives = 568/993 (57%), Gaps = 114/993 (11%)
Query: 283 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRF 342
+AVMSVDLGSE MKVAIV PGVPMEI LNKES+RKTP V + ER G+ A + +
Sbjct: 33 LAVMSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVTVTLKENERFLGDSAAGMAIKN 92
Query: 343 PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAM 402
P + YF LLGK D+P V L++SRFP ++++ D +R T+ F+ + + EE++ M
Sbjct: 93 PKATLRYFQHLLGKQADNPHVALYRSRFPEHELIVDPQRQTVRFQISPQLQFSPEEVLGM 152
Query: 403 LLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALN 462
+L+ +R A A Q I +AVI VP +FNQ ER+++L+A +AGLKVLQL+ND TA AL+
Sbjct: 153 VLNYSRSLAEDFAEQPIKDAVITVPAFFNQAERRAVLQAARMAGLKVLQLINDNTATALS 212
Query: 463 YGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 522
YG+F+RKD N T +VMFYDMG+ ST +IV+YQ VKTKE G PQ+ + GVG+DR
Sbjct: 213 YGVFRRKDINSTA-QNVMFYDMGSGSTVCTIVTYQTVKTKEAGM---QPQLQIRGVGFDR 268
Query: 523 TLGGLEMQIRLRDFLGKKFNEMKK--TTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFA 580
TLGGLEM++RLR+ L K FNE +K KDV ENPRA+AKL +EA RLK VLSAN +H A
Sbjct: 269 TLGGLEMELRLREHLAKLFNEQRKGQKAKDVRENPRAMAKLLREANRLKTVLSANADHMA 328
Query: 581 QIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTR 640
QIEGL+D++DFK VTR EFE L DLFDRV PV+QAL+S+ + +D I QVILVG TR
Sbjct: 329 QIEGLMDDVDFKAKVTRVEFEELCADLFDRVPGPVQQALQSAEMSLDQIEQVILVGGATR 388
Query: 641 VPKVQEKITKVVGV-ELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVE 699
VPKVQE + K VG EL KN+N DEAAA+GAVY+AA LS FKVK F+ +D V+YPI VE
Sbjct: 389 VPKVQEVLLKAVGKEELGKNINADEAAAMGAVYQAAALSKAFKVKPFVVRDAVIYPILVE 448
Query: 700 FERESES----GDTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQ 755
F RE E K KR+LF YPQ+K++TFN+Y DFNF+++Y ++ L PE
Sbjct: 449 FTREVEEEPGLRSLKHNKRVLFSRMGPYPQRKVITFNRYSHDFNFHINYG-DLGFLGPED 507
Query: 756 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELV----VE 811
+ + G++ ++ + GV E+F K+ + ESKGIKAHF +DESG+LSL +E V VE
Sbjct: 508 LRVFGSQNLTTVKLKGVGESFKKY--PDYESKGIKAHFNLDESGVLSLDRVESVFETLVE 565
Query: 812 KQEAAESPLSKLGNTLTSLF---SRSKTDEN----------------------------- 839
ES L+KLGNT++SLF + S EN
Sbjct: 566 DSPEEESTLTKLGNTISSLFGGGTSSDAKENGTDAVQEEEESPAEGSKDEPAEQGELKEE 625
Query: 840 -------------EKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADK 886
+P +A EG K E+ S + + + + + A P+ DK
Sbjct: 626 AEPPAEETSQPPPSEPKGDAAREGEKPDEKESGDKPEAQKPNEKGQAGPEGAAPAPEEDK 685
Query: 887 KPKIVTVK---EPISASETRYGVSTLNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLES 943
KPK + E I + L E ++ +S+ KL+ L + K +EKA NSLE+
Sbjct: 686 KPKPARKQKMVEEIGVELAVLDLPDLPEDELARSVQKLEELTLRDLEKQEREKAANSLEA 745
Query: 944 LLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLV 1003
+F+ + KL EY V+ + + I K+ + WLE++G+ A +L++KL E+ L
Sbjct: 746 FIFETQDKLYQPEYQEVSTEEQREEISGKLSATSTWLEDEGFGATTVMLKDKLAELRKLC 805
Query: 1004 VPIWERHREHQERPEALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDT 1063
++ R E ++ PE L +L+N LN S F + + E +F+++E+ +
Sbjct: 806 QGLFFRVEERRKWPERLSALDNLLNHSSIFLKGARLIP------EMDQVFTEVEMTT--- 856
Query: 1064 LSMVWFRVCWGFFFLLFKQDKGLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEK 1123
L+ +IN+T WK + EQ +L ++ VL + I K
Sbjct: 857 ----------------------LEKVINDTWAWKNATLAEQAKLPATEKPVLLSKDIEAK 894
Query: 1124 IRALEREVRYLENKSKLWMASLNKKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQ-- 1181
+ AL+REV+YL NK+K K +PK+K+ + +P + +E+
Sbjct: 895 MMALDREVQYLLNKAKF-------------TKPRPRPKDKNGTRAEPPLNASAGDQEEKV 941
Query: 1182 --PAGDQEPLTPKPSPSPVDETTTPEDKTKTEL 1212
PAG E P P + T P D EL
Sbjct: 942 IPPAGQTEEAKPILEPDKEETGTEPADSEPLEL 974
|
Has a pivotal role in cytoprotective cellular mechanisms triggered by oxygen deprivation. May play a role as a molecular chaperone and participate in protein folding. Mus musculus (taxid: 10090) |
| >sp|Q63617|HYOU1_RAT Hypoxia up-regulated protein 1 OS=Rattus norvegicus GN=Hyou1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/964 (41%), Positives = 565/964 (58%), Gaps = 117/964 (12%)
Query: 283 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRF 342
+AVMSVDLGSE MKVAIV PGVPMEI LNKES+RKTP V + ER G+ A + +
Sbjct: 33 LAVMSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVTVTLKENERFLGDSAAGMAIKN 92
Query: 343 PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAM 402
P + YF LLGK D+P V L++SRFP +++ D +R T+ F+ + + EE++ M
Sbjct: 93 PKATLRYFQHLLGKQADNPHVALYRSRFPEHELNVDPQRQTVRFQISPQLQFSPEEVLGM 152
Query: 403 LLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALN 462
+L+ +R A A Q I +AVI VP +FNQ ER+++L+A +AGLKVLQL+ND TA AL+
Sbjct: 153 VLNYSRSLAEDFAEQPIKDAVITVPAFFNQAERRAVLQAARMAGLKVLQLINDNTATALS 212
Query: 463 YGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 522
YG+F+RKD N T ++MFYDMG+ ST +IV+YQ VKTKE G T PQ+ + GVG+DR
Sbjct: 213 YGVFRRKDINSTA-QNIMFYDMGSGSTVCTIVTYQTVKTKEAG---TQPQLQIRGVGFDR 268
Query: 523 TLGGLEMQIRLRDFLGKKFNEMKK--TTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFA 580
TLGGLEM++RLR+ L K FNE +K KDV ENPRA+AKL +EA RLK VLSAN +H A
Sbjct: 269 TLGGLEMELRLREHLAKLFNEQRKGQKAKDVRENPRAMAKLLREANRLKTVLSANADHMA 328
Query: 581 QIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTR 640
QIEGL+D++DFK VTR EFE L DLFDRV PV+QAL+S+ + +D I QVILVG TR
Sbjct: 329 QIEGLMDDVDFKAKVTRVEFEELCADLFDRVPGPVQQALQSAEMSLDQIEQVILVGGPTR 388
Query: 641 VPKVQEKITKVVGV-ELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVE 699
VPKVQE + K VG EL KN+N DEAAA+GAVY+AA LS FKVK F+ +D V+YPI VE
Sbjct: 389 VPKVQEVLLKPVGKEELGKNINADEAAAMGAVYQAAALSKAFKVKPFVVRDAVIYPILVE 448
Query: 700 FERESES----GDTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQ 755
F RE E K KR+LF YPQ+K++TFN+Y DFNF+++Y ++ L PE
Sbjct: 449 FTREVEEEPGLRSLKHNKRVLFSRMGPYPQRKVITFNRYSHDFNFHINYG-DLGFLGPED 507
Query: 756 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELV----VE 811
+ + G++ ++ + GV E+F K+ + ESKGIKAHF +DESG+LSL +E V VE
Sbjct: 508 LRVFGSQNLTTVKLKGVGESFKKY--PDYESKGIKAHFNLDESGVLSLDRVESVFETLVE 565
Query: 812 KQEAAESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKNVNSTESQ-QQS 870
ES L+KLGNT++SLF + + ++ +AV E ++ E SK+ + + + ++
Sbjct: 566 DSPEEESTLTKLGNTISSLFGGGTSSDAKENGTDAVQEEEESPAEGSKDEPAEQGELKEE 625
Query: 871 AEESVKNATQTP------DADKKPKIVTVKEPISASETR--------------------- 903
AE +++ +Q P DA ++ + KE SE +
Sbjct: 626 AEAPMEDTSQPPPSEPKGDAAREGETPDEKESGDKSEAQKPNEKGQAGPEGVPPAPEEEK 685
Query: 904 --------------------YGVSTLNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLES 943
+ L E ++ S+ KL+ L + K +EKA NSLE+
Sbjct: 686 KQKPARKQKMVEEIGVELAVLDLPDLPEDELAHSVQKLEDLTLRDLEKQEREKAANSLEA 745
Query: 944 LLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLV 1003
+F+ + KL EY V+ + + I K+ + WLE++G+ A +L++KL E+ L
Sbjct: 746 FIFETQDKLYQPEYQEVSTEEQREEISGKLSATSTWLEDEGFGATTVMLKDKLAELRKLC 805
Query: 1004 VPIWERHREHQERPEALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDT 1063
++ R E ++ PE L +L+N LN S F + + E +F+D+E+ +
Sbjct: 806 QGLFFRVEERRKWPERLSALDNLLNHSSIFLKGARLIP------EMDQIFTDVEMTT--- 856
Query: 1064 LSMVWFRVCWGFFFLLFKQDKGLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEK 1123
L+ +IN+T WK + EQ +L ++ VL + I K
Sbjct: 857 ----------------------LEKVINDTWTWKNATLAEQAKLPATEKPVLLSKDIEAK 894
Query: 1124 IRALEREVRYLENKSKLWMASLNKKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPA 1183
+ AL+REV+YL NK+K K +PK+K+ +T+P P A
Sbjct: 895 MMALDREVQYLLNKAKF-------------TKPRPRPKDKNGTRTEP-------PLNASA 934
Query: 1184 GDQE 1187
GDQE
Sbjct: 935 GDQE 938
|
Has a pivotal role in cytoprotective cellular mechanisms triggered by oxygen deprivation. May play a role as a molecular chaperone and participate in protein folding. Rattus norvegicus (taxid: 10116) |
| >sp|Q9Y4L1|HYOU1_HUMAN Hypoxia up-regulated protein 1 OS=Homo sapiens GN=HYOU1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/993 (40%), Positives = 568/993 (57%), Gaps = 114/993 (11%)
Query: 283 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRF 342
+AVMSVDLGSE MKVAIV PGVPMEI LNKES+RKTP +V + ER FG+ A + +
Sbjct: 33 LAVMSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVIVTLKENERFFGDSAASMAIKN 92
Query: 343 PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAM 402
P + YF LLGK D+P V L+++RFP +++ D +R T+ F+ + + EE++ M
Sbjct: 93 PKATLRYFQHLLGKQADNPHVALYQARFPEHELTFDPQRQTVHFQISSQLQFSPEEVLGM 152
Query: 403 LLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALN 462
+L+ +R A A Q I +AVI VP +FNQ ER+++L+A +AGLKVLQL+ND TA AL+
Sbjct: 153 VLNYSRSLAEDFAEQPIKDAVITVPVFFNQAERRAVLQAARMAGLKVLQLINDNTATALS 212
Query: 463 YGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 522
YG+F+RKD N T ++MFYDMG+ ST +IV+YQ+VKTKE G PQ+ + GVG+DR
Sbjct: 213 YGVFRRKDIN-TTAQNIMFYDMGSGSTVCTIVTYQMVKTKEAGM---QPQLQIRGVGFDR 268
Query: 523 TLGGLEMQIRLRDFLGKKFNEMKK--TTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFA 580
TLGGLEM++RLR+ L FNE +K KDV ENPRA+AKL +EA RLK VLSAN +H A
Sbjct: 269 TLGGLEMELRLRERLAGLFNEQRKGQRAKDVRENPRAMAKLLREANRLKTVLSANADHMA 328
Query: 581 QIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTR 640
QIEGL+D++DFK VTR EFE L DLF+RV PV+QAL+S+ + +D I QVILVG TR
Sbjct: 329 QIEGLMDDVDFKAKVTRVEFEELCADLFERVPGPVQQALQSAEMSLDEIEQVILVGGATR 388
Query: 641 VPKVQEKITKVVGV-ELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVE 699
VP+VQE + K VG EL KN+N DEAAA+GAVY+AA LS FKVK F+ +D V+YPI VE
Sbjct: 389 VPRVQEVLLKAVGKEELGKNINADEAAAMGAVYQAAALSKAFKVKPFVVRDAVVYPILVE 448
Query: 700 FERESES----GDTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQ 755
F RE E K KR+LF YPQ+K++TFN+Y DFNF+++Y ++ L PE
Sbjct: 449 FTREVEEEPGIHSLKHNKRVLFSRMGPYPQRKVITFNRYSHDFNFHINYG-DLGFLGPED 507
Query: 756 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELV----VE 811
+ + G++ ++ + GV ++F K+ + ESKGIKAHF +DESG+LSL +E V VE
Sbjct: 508 LRVFGSQNLTTVKLKGVGDSFKKY--PDYESKGIKAHFNLDESGVLSLDRVESVFETLVE 565
Query: 812 KQEAAESPLSKLGNTLTSLFSRSKT---------------------------------DE 838
ES L+KLGNT++SLF T +E
Sbjct: 566 DSAEEESTLTKLGNTISSLFGGGTTPDAKENGTDTVQEEEESPAEGSKDEPGEQVELKEE 625
Query: 839 NEKPI------------NEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADK 886
E P+ +A EG K E+ + + + + + AE + P+ +K
Sbjct: 626 AEAPVEDGSQPPPPEPKGDATPEGEKATEKENGDKSEAQKPSEKAEAGPEGVAPAPEGEK 685
Query: 887 KPKIVTVK---EPISASETRYGVSTLNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLES 943
K K + E I + L E ++ +S+ KL L + K +EKA NSLE+
Sbjct: 686 KQKPARKRRMVEEIGVELVVLDLPDLPEDKLAQSVQKLQDLTLRDLEKQEREKAANSLEA 745
Query: 944 LLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLV 1003
+F+ + KL EY V+ + + I K+ + WLE++G A +L+ KL E+ L
Sbjct: 746 FIFETQDKLYQPEYQEVSTEEQREEISGKLSAASTWLEDEGVGATTVMLKEKLAELRKLC 805
Query: 1004 VPIWERHREHQERPEALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDT 1063
++ R E ++ PE L +L+N LN S F + + E +F+++E+ +
Sbjct: 806 QGLFFRVEERKKWPERLSALDNLLNHSSMFLKGARLIP------EMDQIFTEVEMTT--- 856
Query: 1064 LSMVWFRVCWGFFFLLFKQDKGLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEK 1123
L+ +INET WK + EQ +L ++ VL + I K
Sbjct: 857 ----------------------LEKVINETWAWKNATLAEQAKLPATEKPVLLSKDIEAK 894
Query: 1124 IRALEREVRYLENKSKLWMASLNKKKESTSKKKEDKPKNKDSDKTKP----SETEQSKPE 1179
+ AL+REV+YL NK+K K +PK+K+ + +P S ++Q +
Sbjct: 895 MMALDREVQYLLNKAKF-------------TKPRPRPKDKNGTRAEPPLNASASDQGEKV 941
Query: 1180 EQPAGDQEPLTPKPSPSPVDETTTPEDKTKTEL 1212
PAG E P P V+ + P D EL
Sbjct: 942 IPPAGQTEDAEPISEPEKVETGSEPGDTEPLEL 974
|
Has a pivotal role in cytoprotective cellular mechanisms triggered by oxygen deprivation. May play a role as a molecular chaperone and participate in protein folding. Homo sapiens (taxid: 9606) |
| >sp|Q5ZLK7|HYOU1_CHICK Hypoxia up-regulated protein 1 OS=Gallus gallus GN=HYOU1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/1007 (41%), Positives = 576/1007 (57%), Gaps = 132/1007 (13%)
Query: 271 VLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERT 330
+LL H+ +AVMSVD+GSE MK+AIV PGVPMEI LNKES+RKTP VA + ER
Sbjct: 12 LLLACCVPHTEPLAVMSVDMGSESMKIAIVKPGVPMEIVLNKESRRKTPVAVALKENERL 71
Query: 331 FGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTND 390
FG+ A + + P ++ YF DLLGK ID+P V L++SRFP +++V DE+R T++FK +
Sbjct: 72 FGDSALGMSIKTPKVAFRYFQDLLGKQIDNPQVALYQSRFPEHELVKDEKRQTVIFKLSQ 131
Query: 391 NELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVL 450
Y EE++ M+L+ +R A A Q I +AVI VP YFNQ ER+++L A +A LKVL
Sbjct: 132 TLQYSPEEMLGMVLNYSRGLAEEFAEQPIKDAVITVPAYFNQAERRAVLHAARMADLKVL 191
Query: 451 QLMNDYTAVALNYGIFKRKDFNETNPVH------VMFYDMGAWSTTVSIVSYQVVKTKER 504
QL+ND TAVALNYG+ K + P+H +MFYDMGA ST +IV+YQ VKTK+
Sbjct: 192 QLINDNTAVALNYGVSGGKT---SMPLHSFSFQNIMFYDMGAGSTVCTIVTYQTVKTKDS 248
Query: 505 GFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKE 564
G T PQ+ + G+G+DRTLGGLEM++RLRD+L K FN+ + +KDV +NPRA+AKL KE
Sbjct: 249 G---TQPQLQIQGIGFDRTLGGLEMELRLRDYLAKLFND-QHPSKDVRKNPRAMAKLLKE 304
Query: 565 AGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAV 624
A RLK VLSAN +H AQIEGL+D+IDFK V+R EFE L DLF RV PV+QAL S+ +
Sbjct: 305 ANRLKTVLSANADHMAQIEGLLDDIDFKAKVSRQEFEDLCSDLFQRVPGPVQQALSSAEM 364
Query: 625 PMDVISQVILVGAGTRVPKVQEKITKVVGV-ELSKNLNTDEAAALGAVYKAADLSTGFKV 683
+D I QVILVG TRVPKVQE + K VG EL KN+N DEAAA+GAVY+AA LS FKV
Sbjct: 365 NLDGIDQVILVGGATRVPKVQEVLLKAVGKEELGKNINADEAAAMGAVYQAAALSKAFKV 424
Query: 684 KKFITKDIVLYPIQVEFERESESGDT----KIIKRMLFGPSNTYPQKKILTFNKYVGDFN 739
K F+ +D ++PIQVEF RE E D K KR+LF YPQ+K++TFN+Y DF
Sbjct: 425 KPFMVRDAAMFPIQVEFTREVEEDDKSKSLKHNKRILFQRMAPYPQRKVITFNRYTDDFE 484
Query: 740 FNVSYASEIEHLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESG 799
F V+Y ++ LN + + + G+ ++ + GV E+F KH+ + ESKGIKAHF MDESG
Sbjct: 485 FYVNYG-DLSFLNQDDLRIFGSLNLTTVRLKGVGESFKKHS--DYESKGIKAHFNMDESG 541
Query: 800 ILSLVNIELV----VEKQEAAESPLSKLGNTLTSLFSRS----KTDEN------------ 839
+LSL +E V VE + ES L+KLGNT++SLF + EN
Sbjct: 542 VLSLDRVESVFETLVEDKLEEESTLTKLGNTISSLFGGGGHTPEAGENLTDSVQEEEESL 601
Query: 840 --EKPINEAVDEGNKTAEEPSKNVNSTESQQ----------------QSAEESVKNATQT 881
+ V +G K++ E + E QQ Q EE K+ +
Sbjct: 602 AEAAKEEQGVKQGQKSSAEDAGEEQGEEKQQSPHPDQAEAVPPKEESQKNEEGEKSEARD 661
Query: 882 PDADKKPKIVTVKEPISASETRYG-------------------------------VSTLN 910
P DK+ TV E + + G V L
Sbjct: 662 PKEDKE----TVNEEELSKSSGAGTAAKAEEEKKIKAPKKQKLVHEITMELDVNDVPDLL 717
Query: 911 EKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIV 970
E +++ S+ KL L + K +EK+ NSLES +F+ + KL EEY V+ E + I
Sbjct: 718 EDELKSSMKKLQDLTIRDLEKQEREKSANSLESFIFETQDKLYQEEYLFVSTEEEREEIS 777
Query: 971 DKIDEITNWLEEDGWNAEADVLENKLNEINSLVVPIWERHREHQERPEALKSLNNALNVS 1030
K+ E +NW+EE+G+ A L++KL E+ L ++ R E ++ PE L +L + LN S
Sbjct: 778 KKLSEASNWMEEEGYAAATKELKDKLAELKKLCRNLFFRVEERRKWPERLAALESLLNHS 837
Query: 1031 VTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLSMVWFRVCWGFFFLLFKQDKGLDTLI 1090
F + + E +F+++EL + L+ I
Sbjct: 838 NIFLKGARMIP------ESDQIFTEVELGT-------------------------LEKAI 866
Query: 1091 NETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSKLWMASLNKKKE 1150
NET VWK ++ EQN+L ++ VL + I KI L+REV+YL +K+K K+K
Sbjct: 867 NETTVWKNETLAEQNKLSPAEKPVLLSKDIELKIAGLDREVQYLLDKAKFAKPKPKKEKN 926
Query: 1151 STSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSP 1197
+T K D KN T SE+E + P + +++P P+ P
Sbjct: 927 AT---KSDSGKN----ATGTSESENTIPPTEGKQEEKPEDISPAKEP 966
|
Has a pivotal role in cytoprotective cellular mechanisms triggered by oxygen deprivation (By similarity). May play a role as a molecular chaperone and participate in protein folding. Gallus gallus (taxid: 9031) |
| >sp|Q60432|HYOU1_CRIGR Hypoxia up-regulated protein 1 OS=Cricetulus griseus GN=HYOU1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/993 (40%), Positives = 563/993 (56%), Gaps = 114/993 (11%)
Query: 283 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRF 342
+AVMSVDLGSE MKVAIV PGVPMEI LNKES+RKTP V + ER G+ A + +
Sbjct: 33 LAVMSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVTVTLKENERFLGDSAAGMAIKN 92
Query: 343 PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAM 402
P + YF LLGK D+P V L++ RFP +++ D +R T+ F+ + + EE++ M
Sbjct: 93 PKATLRYFQHLLGKQADNPHVALYRDRFPEHELNIDPQRQTVRFQISPQLQFSPEEVLGM 152
Query: 403 LLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALN 462
+L+ +R A A Q I +AVI VP +FNQ ER+++L+A +AGLKVLQL+ND TA AL+
Sbjct: 153 VLNYSRSLAEDFAEQPIKDAVITVPAFFNQAERRAVLQAARMAGLKVLQLINDNTATALS 212
Query: 463 YGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 522
YG+F+RKD N T +VMFYDMG+ +T +IV+YQ VKTKE G PQ+ + GVG+DR
Sbjct: 213 YGVFRRKDINSTA-QNVMFYDMGSGTTVCTIVTYQTVKTKEAGM---QPQLQIRGVGFDR 268
Query: 523 TLGGLEMQIRLRDFLGKKFNEMKK--TTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFA 580
TLGGLEM++RLR+ L K FNE ++ KDV ENPRA+AKL +EA RLK VLSAN +H A
Sbjct: 269 TLGGLEMELRLREHLAKLFNEQRRGQKAKDVRENPRAMAKLLREANRLKTVLSANADHMA 328
Query: 581 QIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTR 640
QIEGL+D++DFK VTR E E L DLF+RV PV+QAL+S+ + +D I QVILVG TR
Sbjct: 329 QIEGLMDDVDFKAKVTRVESEELCADLFERVPGPVQQALQSAEMSLDEIEQVILVGGATR 388
Query: 641 VPKVQEKITKVVGV-ELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVE 699
VPKVQE + K VG EL KN+N DEAAA+GAVY+AA LS FKVK F+ +D V+YPI VE
Sbjct: 389 VPKVQEVLLKAVGKEELGKNINADEAAAMGAVYQAAALSKAFKVKPFVVRDAVIYPILVE 448
Query: 700 FERESES----GDTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQ 755
F RE E K KR+LF YPQ K++TFN+Y DFNF+++Y ++ L PE
Sbjct: 449 FTREVEEEPGVRSLKHNKRVLFSRMGPYPQGKVITFNRYSHDFNFHINYG-DLGFLGPED 507
Query: 756 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELV----VE 811
+ + G++ ++ + GV E+ K+ + ESKGIKAHF +DESG+LSL +E V VE
Sbjct: 508 LRVFGSQNLTTVKLKGVGESLKKYP--DYESKGIKAHFNLDESGVLSLDRVESVFETLVE 565
Query: 812 KQEAAESPLSKLGNTLTSLFSRSKT---------------------------------DE 838
ES L+KLGNT++SLF + +E
Sbjct: 566 DSPEEESTLTKLGNTISSLFGGGTSSDAKENGTDAVQEEEESPTEGSKDEPGEQGDLKEE 625
Query: 839 NEKPI------------NEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADK 886
E P+ +A EG K E+ S + + ++ + + P+ +K
Sbjct: 626 TEAPVEDTSQPPPPEPKGDAAPEGEKPDEKESGGKSEAQKPEEKGQSGPEGVPPAPEEEK 685
Query: 887 KPKIVTVK---EPISASETRYGVSTLNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLES 943
K K + E I + L E ++ +S+ KL+ L + K +EKA NSLE+
Sbjct: 686 KQKPARKQKMVEEIGVELAVLDLPDLPEDELARSVKKLEDLTLRDLEKQEREKAANSLEA 745
Query: 944 LLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLV 1003
+F+ + KL EY V+ + + I K+ + WLE++G+ A +L+ KL E+ L
Sbjct: 746 FIFETQDKLYQPEYQEVSTEEQREEISGKLSATSTWLEDEGFGATTVMLKEKLAELKKLC 805
Query: 1004 VPIWERHREHQERPEALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDT 1063
++ R E ++ PE L +L+N LN S F + + E +F+++E+ +
Sbjct: 806 QGLFFRVEERRKWPERLSALDNLLNHSSIFLKGARLIP------EMDQIFTEVEMTT--- 856
Query: 1064 LSMVWFRVCWGFFFLLFKQDKGLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEK 1123
L+ +IN+T WK + EQ +L ++ VL + I K
Sbjct: 857 ----------------------LEKVINDTWAWKNATLAEQAKLPATEKPVLLSKDIEAK 894
Query: 1124 IRALEREVRYLENKSKLWMASLNKKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQ-- 1181
+ AL+REV+YL NK+K K +PK+K+ +T+P + +E+
Sbjct: 895 MMALDREVQYLLNKAKF-------------TKPRPRPKDKNGTRTEPPLNATAGDQEEKV 941
Query: 1182 --PAGDQEPLTPKPSPSPVDETTTPEDKTKTEL 1212
PAG E P P + TT P D EL
Sbjct: 942 IPPAGQPEEAKPILEPDKEETTTEPTDSEPLEL 974
|
Has a pivotal role in cytoprotective cellular mechanisms triggered by oxygen deprivation. May play a role as a molecular chaperone and participate in protein folding. Cricetulus griseus (taxid: 10029) |
| >sp|Q566I3|HYOU1_XENLA Hypoxia up-regulated protein 1 (Fragment) OS=Xenopus laevis GN=hyou1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 617 bits (1590), Expect = e-175, Method: Compositional matrix adjust.
Identities = 329/625 (52%), Positives = 437/625 (69%), Gaps = 29/625 (4%)
Query: 266 LCSSVVLLLTLFE-HSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAF 324
+C + L L H+ +AVMSVDLGSEW+KVAIV PGVPMEI LNKES+RKTP +A
Sbjct: 5 VCVLWMFLFALLSSHTESVAVMSVDLGSEWVKVAIVKPGVPMEIVLNKESRRKTPAAIAL 64
Query: 325 HKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTI 384
+ ER FGE+A + + P ++ YF DLLGK +D+P VQ F++RFP Y +V DE R T+
Sbjct: 65 KENERLFGENALGMAVKNPKVTFRYFQDLLGKRLDNPQVQAFEARFPEYHLVKDERRETV 124
Query: 385 VFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGEL 444
+FK +++ Y EEL+ M+L+ +R A A Q + + VI VP +FNQ ER+++L+A +L
Sbjct: 125 LFKLSEDLTYSPEELLGMVLNYSRSLAEDFAEQPVKDVVITVPAFFNQAERRAVLQAAQL 184
Query: 445 AGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKER 504
+GLKVLQL+ND TAVALNYG+F+RKD N T +VMFYDMG ST +IV+YQ +KTK+
Sbjct: 185 SGLKVLQLINDNTAVALNYGVFRRKDINAT-AQNVMFYDMGTRSTICTIVTYQTIKTKDS 243
Query: 505 GFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKE 564
G T PQ+ + GVG+DRTLGGLE+ +RLRD L K FNE KK+ KDV EN RA+ KL KE
Sbjct: 244 G---TQPQLQIRGVGFDRTLGGLEIDLRLRDHLAKLFNEQKKSKKDVRENQRAMNKLLKE 300
Query: 565 AGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAV 624
A R+K +LSANN+H AQIEGL+D+IDFK VTR E E L DLF+RV PV+QAL S+ +
Sbjct: 301 ANRVKTILSANNDHMAQIEGLMDDIDFKAKVTRQELEDLCADLFNRVSAPVQQALASAEM 360
Query: 625 PMDVISQVILVGAGTRVPKVQEKITKVVGV-ELSKNLNTDEAAALGAVYKAADLSTGFKV 683
M+ I QVILVG TRVPKVQE + KVVG ELSKN+N DEAAA+GAVY+AA LS FKV
Sbjct: 361 KMEEIDQVILVGGATRVPKVQEFLLKVVGKEELSKNINADEAAAMGAVYQAAALSKAFKV 420
Query: 684 KKFITKDIVLYPIQVEFERESE----SGDTKIIKRMLFGPSNTYPQKKILTFNKYVGDFN 739
K FI +D ++PIQVEF RE E S K KR+LF YPQ+K++TFN+Y DF
Sbjct: 421 KPFIVRDAAIFPIQVEFTREVEEENHSKSLKHNKRILFQRLAPYPQRKVITFNRYTDDFA 480
Query: 740 FNVSYASEIEHLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESG 799
F+++Y ++ +L PE + + G+ ++ ++GV E+F K + + ESKGIKAHF MDESG
Sbjct: 481 FSINYG-DLSYLGPEDLKVFGSLNLTTVKLNGVGESFQKRS--DYESKGIKAHFNMDESG 537
Query: 800 ILSLVNIELVVE----KQEAAESPLSKLGNTLTSLF----SRSKTDENEKPINEAVDEGN 851
+L+L +E V E ++ ES L+KLGNT++SLF S S+T EN + ++V E +
Sbjct: 538 LLTLDRVEAVFETVADEKPELESTLTKLGNTISSLFGGGSSVSETKEN---VTDSVQEED 594
Query: 852 KTAEEPSKNVNSTESQQQSAEESVK 876
+ EP+K E +Q+SA+ + K
Sbjct: 595 EVPTEPTK-----EEEQESADPADK 614
|
Has a pivotal role in cytoprotective cellular mechanisms triggered by oxygen deprivation (By similarity). May play a role as a molecular chaperone and participate in protein folding. Xenopus laevis (taxid: 8355) |
| >sp|Q0VA61|HYOU1_XENTR Hypoxia up-regulated protein 1 (Fragment) OS=Xenopus tropicalis GN=hyou1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 602 bits (1551), Expect = e-171, Method: Compositional matrix adjust.
Identities = 316/622 (50%), Positives = 431/622 (69%), Gaps = 23/622 (3%)
Query: 266 LCSSVVLLLTLFE-HSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAF 324
+C + LL L ++ +AVMSVD+GSEWMK+AIV PGVPMEI LNKES+RKTP +A
Sbjct: 5 VCVFTMFLLALLSSNTESVAVMSVDMGSEWMKIAIVKPGVPMEIVLNKESRRKTPVAIAL 64
Query: 325 HKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTI 384
+ ER FG+ A + + P ++ YF DLLGK D+P V+ F++RFP Y +V DE R T+
Sbjct: 65 KENERLFGDSALGMAVKNPKVTFRYFQDLLGKRADNPHVKAFEARFPEYQLVKDEHRETV 124
Query: 385 VFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGEL 444
+FK ++ Y EEL+ M+L+ +R A A Q + + VI VP +FNQ ER+++L+A +L
Sbjct: 125 LFKLSEELTYSPEELLGMMLNYSRSLAEEFAEQPVKDVVITVPAFFNQAERRAVLQAAQL 184
Query: 445 AGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKER 504
+ LKVLQL+ND TAVALNYG+F+RKD N T ++MFY+MG+ ST +IV+YQ VKTK+
Sbjct: 185 SDLKVLQLINDNTAVALNYGVFRRKDINATAQ-NIMFYEMGSRSTICTIVTYQSVKTKDS 243
Query: 505 GFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKE 564
G PQ+ + GVG+DRTLGG+EM +RLRD L K FNE KK+ KDV EN RA++KL KE
Sbjct: 244 GM---QPQLQIRGVGFDRTLGGIEMDLRLRDHLAKLFNEQKKSKKDVRENQRAMSKLLKE 300
Query: 565 AGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAV 624
A R+K +LSANN+H AQIEGL+D+IDFK VTR E E L DLF+RV PV+ AL S+ +
Sbjct: 301 ANRVKTILSANNDHMAQIEGLMDDIDFKAKVTRQELEDLCADLFNRVSAPVQHALSSAEM 360
Query: 625 PMDVISQVILVGAGTRVPKVQEKITKVVGV-ELSKNLNTDEAAALGAVYKAADLSTGFKV 683
M+ I QVILVG TRVPKVQE + KVVG EL KN+N DEAAA+GAVY+AA LS FKV
Sbjct: 361 KMEEIDQVILVGGATRVPKVQELLLKVVGKEELGKNINADEAAAMGAVYQAAALSKAFKV 420
Query: 684 KKFITKDIVLYPIQVEFERESESGD----TKIIKRMLFGPSNTYPQKKILTFNKYVGDFN 739
K FI +D ++PIQVEF RE E D K KR+LF YPQ+K++TFN+Y +F
Sbjct: 421 KPFIVRDAAIFPIQVEFTREVEEEDHSKSLKHNKRILFQRLAPYPQRKVITFNRYTDNFA 480
Query: 740 FNVSYASEIEHLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESG 799
F+++Y ++ +L P+ + + G+ ++ ++GV E+F K + + ESKGIKAHF MDESG
Sbjct: 481 FSINYG-DLSYLGPDDLKVFGSLNLTTVKLNGVGESFQKRS--DYESKGIKAHFNMDESG 537
Query: 800 ILSLVNI----ELVVEKQEAAESPLSKLGNTLTSLF-SRSKTDENEKPINEAVDEGNKTA 854
+L+L + E VV+++ ES L+KLGNT++SLF S E ++ ++V E ++
Sbjct: 538 LLTLDRVEAVFETVVDEKPEQESTLTKLGNTISSLFGGGSSVPETKENATDSVQEEDEVP 597
Query: 855 EEPSKNVNSTESQQQSAEESVK 876
EP+K E +Q+SA+ + K
Sbjct: 598 TEPTK-----EEEQESADAADK 614
|
Has a pivotal role in cytoprotective cellular mechanisms triggered by oxygen deprivation (By similarity). May play a role as a molecular chaperone and participate in protein folding. Xenopus tropicalis (taxid: 8364) |
| >sp|F4JMJ1|HSP7R_ARATH Heat shock 70 kDa protein 17 OS=Arabidopsis thaliana GN=HSP70-17 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 377 bits (968), Expect = e-103, Method: Compositional matrix adjust.
Identities = 273/755 (36%), Positives = 412/755 (54%), Gaps = 52/755 (6%)
Query: 284 AVMSVDLGSEWMKVAIVS---PGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGT 340
AV+SVDLGSEW+KVA+V+ P+ +A+N+ SKRK+P LVAF G+R GE+A I
Sbjct: 25 AVLSVDLGSEWVKVAVVNLKRGQSPISVAINEMSKRKSPALVAFQSGDRLLGEEAAGITA 84
Query: 341 RFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNE-LYHVEEL 399
R+P+ Y D++GK V S + +DIV D RG + K +D +Y VEEL
Sbjct: 85 RYPNKVYSQLRDMVGKPFKH-VKDFIDSVYLPFDIVEDS-RGAVGIKIDDGSTVYSVEEL 142
Query: 400 VAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAV 459
+AM+L A A A + + V+ VP YF Q ER+ +++A +LAG+ VL L+N+++
Sbjct: 143 LAMILGYASNLAEFHAKIPVKDMVVSVPPYFGQAERRGLIQASQLAGVNVLSLVNEHSGA 202
Query: 460 ALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVG 519
AL YGI KDF HV+FYDMG+ ST ++V Y KE G + Q V V
Sbjct: 203 ALQYGI--DKDF-ANGSRHVIFYDMGSSSTYAALVYYSAYSEKEYGKTVSVNQFQVKDVR 259
Query: 520 YDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHF 579
+D LGG M++RL + +FN+ DV + P+A+AKL K+ R K +LSAN
Sbjct: 260 WDLGLGGQSMEMRLVEHFADEFNKQLGNGVDVRKFPKAMAKLKKQVKRTKEILSANTAAP 319
Query: 580 AQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGT 639
+E L D+ DF+ +TR +FE L +DL++R P++ LK S + +D IS V L+G T
Sbjct: 320 ISVESLHDDRDFRSTITREKFEELCKDLWERSLTPLKDVLKHSGLKIDDISAVELIGGAT 379
Query: 640 RVPKVQEKITKVVG-VELSKNLNTDEAAALGAVYKAADLSTGFKVKKFI-TKDIVLYPIQ 697
RVPK+Q I + +G +L K+L+ DEA LG+ AA+LS G K+K+ + D Y
Sbjct: 380 RVPKLQSTIQEFIGKQQLDKHLDADEAIVLGSALHAANLSDGIKLKRRLGIVDGSPYGFL 439
Query: 698 VEFE----RESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNP 753
VE E ++ ES +++ RM PS F +V D +F+VS A E E + P
Sbjct: 440 VELEGPNVKKDESTKQQLVPRMKKLPSK--------MFRSFVLDKDFDVSLAYESEGILP 491
Query: 754 EQIAMLGTKQ--ISKFDVSGVSEAFGKHNEENAESKGIKA--HFAMDESGILSLVNIELV 809
GT +++ VSG+++A K++ N S IKA HF++ SGILSL + V
Sbjct: 492 P-----GTTSPVFAQYSVSGLADASEKYSSRNL-SAPIKANLHFSLSRSGILSLDRGDAV 545
Query: 810 VEKQEAAESPLSKL---GNTLTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKNVNSTES 866
+E E + P + NT TS + + TDEN + E + +T E S N+T
Sbjct: 546 IEITEWVDVPKKNVTIDSNTTTS--TGNATDENSQENKEDL----QTDAENSTASNTT-- 597
Query: 867 QQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGV-STLNEKQVEKSLSKLDSLN 925
AEE A + +KK K T + P+ E G + +++ + ++ KL++L+
Sbjct: 598 ----AEEP---AVASLGTEKKLKKRTFRIPLKVVEKTVGPGAPFSKESLAEAKIKLEALD 650
Query: 926 QIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGW 985
+ + + R + N+LES ++ K KLE E+ ++ E K V+K+DE+ +WL DG
Sbjct: 651 KKDRERRRTAELKNNLESYIYATKEKLETPEFEKISTQEERKAFVEKLDEVQDWLYMDGE 710
Query: 986 NAEADVLENKLNEINSLVVPIWERHREHQERPEAL 1020
+A A E +L+ + ++ PI R E RP A+
Sbjct: 711 DANATEFEKRLDSLKAIGSPISFRSEELTARPVAI 745
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q10061|LHS1_SCHPO Heat shock protein 70 homolog lhs1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1F5.06 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 279 bits (714), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 156/440 (35%), Positives = 261/440 (59%), Gaps = 11/440 (2%)
Query: 259 MKISLVTLCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKT 318
MK S++T+ ++ F H++ +V+++D G+EW K A++ PG+P+EI L K+++RK
Sbjct: 1 MKRSVLTI---ILFFSCQFWHAFASSVLAIDYGTEWTKAALIKPGIPLEIVLTKDTRRKE 57
Query: 319 PTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKS-IDSPVVQLFKSRFPYYDIVA 377
+ VAF ER FG DA + TRFP++S +LL + ++S +VQ ++S +P +V
Sbjct: 58 QSAVAFKGNERIFGVDASNLATRFPAHSIRNVKELLDTAGLESVLVQKYQSSYPAIQLVE 117
Query: 378 DEERGT-IVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQ 436
+EE + I F +D E Y +EE++AM + A A + I + V+ VP +FN+++R
Sbjct: 118 NEETTSGISFVISDEENYSLEEIIAMTMEHYISLAEEMAHEKITDLVLTVPPHFNELQRS 177
Query: 437 SMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSY 496
+L+A + VL L++D AVA+ Y + + F+ T+P + + YD G+ ST+ +++S+
Sbjct: 178 ILLEAARILNKHVLALIDDNVAVAIEYSL--SRSFS-TDPTYNIIYDSGSGSTSATVISF 234
Query: 497 QVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPR 556
V+ G + ++ L G+ L G E+ +L F+ F +K D+ N R
Sbjct: 235 DTVEGSSLGKKQNITRIRALASGFTLKLSGNEINRKLIGFMKNSF--YQKHGIDLSHNHR 292
Query: 557 AVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVE 616
A+A+L KEA R+K++LSAN+E A IE L D IDF+L +TR+ E+L +D+ D P+
Sbjct: 293 ALARLEKEALRVKHILSANSEAIASIEELADGIDFRLKITRSVLESLCKDMEDAAVEPIN 352
Query: 617 QALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVE-LSKNLNTDEAAALGAVYKAA 675
+ALK + + I+ +IL G +R+P +Q + V + +SKN+N DEA+ GA + A
Sbjct: 353 KALKKANLTFSEINSIILFGGASRIPFIQSTLADYVSSDKISKNVNADEASVKGAAFYGA 412
Query: 676 DLSTGFKVKKFITKDIVLYP 695
L+ F+VK I +DI+ YP
Sbjct: 413 SLTKSFRVKPLIVQDIINYP 432
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1212 | ||||||
| 91080263 | 872 | PREDICTED: similar to AGAP001827-PA [Tri | 0.676 | 0.940 | 0.546 | 0.0 | |
| 345491532 | 938 | PREDICTED: hypoxia up-regulated protein | 0.752 | 0.972 | 0.511 | 0.0 | |
| 242024934 | 991 | 150 kDa oxygen-regulated protein precurs | 0.712 | 0.870 | 0.522 | 0.0 | |
| 383847076 | 946 | PREDICTED: hypoxia up-regulated protein | 0.721 | 0.924 | 0.497 | 0.0 | |
| 345491538 | 923 | PREDICTED: hypoxia up-regulated protein | 0.745 | 0.978 | 0.505 | 0.0 | |
| 328784616 | 951 | PREDICTED: hypoxia up-regulated protein | 0.724 | 0.923 | 0.498 | 0.0 | |
| 380029680 | 952 | PREDICTED: hypoxia up-regulated protein | 0.724 | 0.922 | 0.496 | 0.0 | |
| 328711504 | 960 | PREDICTED: hypoxia up-regulated protein | 0.760 | 0.960 | 0.492 | 0.0 | |
| 403183091 | 925 | AAEL017263-PA [Aedes aegypti] | 0.747 | 0.979 | 0.487 | 0.0 | |
| 350410432 | 953 | PREDICTED: hypoxia up-regulated protein | 0.731 | 0.929 | 0.495 | 0.0 |
| >gi|91080263|ref|XP_973490.1| PREDICTED: similar to AGAP001827-PA [Tribolium castaneum] gi|270005695|gb|EFA02143.1| hypothetical protein TcasGA2_TC007793 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 919 bits (2374), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/883 (54%), Positives = 632/883 (71%), Gaps = 63/883 (7%)
Query: 263 LVTLCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLV 322
+ + S+++ L T+ E +AVMSVDLGSEWMK+ IVSPGVPMEIALNKESKRK+P ++
Sbjct: 4 IFAILSTLLALATVCE---SLAVMSVDLGSEWMKIGIVSPGVPMEIALNKESKRKSPAVI 60
Query: 323 AFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERG 382
+F R+FGE+AQ IGTRFP N+Y Y LDLLGKSI+ P+V+L+K RFPYY+IV D ER
Sbjct: 61 SFRDNVRSFGEEAQTIGTRFPKNAYMYLLDLLGKSINHPLVKLYKERFPYYEIVEDPERN 120
Query: 383 TIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 442
TI+FK +DN Y EEL+A LL KA+E+A A Q I E V+ VPGYFNQIER+S+L+A
Sbjct: 121 TILFKHDDNVFYSPEELIAQLLGKAKEFAEQGARQPIKECVLTVPGYFNQIERKSLLQAA 180
Query: 443 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTK 502
LAGLKVLQL+NDYTAVALNYGIF+ KDFNET +VMFYDMGA STT ++VSYQ VKTK
Sbjct: 181 NLAGLKVLQLINDYTAVALNYGIFRSKDFNETAQ-YVMFYDMGATSTTATLVSYQTVKTK 239
Query: 503 ERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLF 562
++GFVETHPQ+SV+GVG+DRTLGGLE+Q+RLRD L +KFNEMKKT DVF N R++AKLF
Sbjct: 240 DKGFVETHPQLSVIGVGFDRTLGGLEIQLRLRDHLARKFNEMKKTKNDVFANARSMAKLF 299
Query: 563 KEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSS 622
KEAGR+KN+LSAN EH+AQIEGL+DE DFK+LVTR E E L DLF+RVG PVE AL+S+
Sbjct: 300 KEAGRVKNILSANAEHYAQIEGLLDEEDFKVLVTRDELEQLAGDLFERVGRPVELALQSA 359
Query: 623 AVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFK 682
+ D+I QV+LVGAGTRVPKVQEK+ VVG +L+KNLNTDEAA +GAVYKAADLSTGF+
Sbjct: 360 HLTKDIIGQVVLVGAGTRVPKVQEKLQGVVGQDLAKNLNTDEAATMGAVYKAADLSTGFQ 419
Query: 683 VKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNV 742
VKKF+T+D VLYPIQV FERE+ G K +KR LF N YPQKKI+TFNKY DFNF V
Sbjct: 420 VKKFLTRDAVLYPIQVVFERETPEG-VKQVKRTLFSLMNPYPQKKIITFNKYNDDFNFEV 478
Query: 743 SYASEIEHLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILS 802
+YA ++++L P +IA +G +++ + GV+EA K++ EN E+KGIKAHF+MDESGIL+
Sbjct: 479 NYA-DLDYLPPNEIANVGQVNLTEVSLVGVAEALKKNSGENVETKGIKAHFSMDESGILN 537
Query: 803 LVNIELVVEK---QEAAESPLSKLGNTLTSLF-SRSKTDENEKPINEAVDEGNKTAEEPS 858
LVN+ELVVEK + E SKLGNT++ LF KT+ E+P+ K EP
Sbjct: 538 LVNVELVVEKTVSETDEEGTFSKLGNTISKLFGGEEKTETGEEPV--------KNDTEPQ 589
Query: 859 KNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSL 918
KN T P + KPK++TVKEPI+ + ++ L++KQ + SL
Sbjct: 590 KN------------------TTVPKPEIKPKVITVKEPITTKQKPLTITPLSKKQFDDSL 631
Query: 919 SKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITN 978
KL L+++E R+ ALN+LES + + ++KL+ +++ + A+ +E +TI E+++
Sbjct: 632 EKLSKLDKVEKELNRRATALNNLESFVIEVQNKLDEDDFVASASQDEVETIRKSCSEVSD 691
Query: 979 WLEEDGWNAEADVLENKLNEINSLVVPIWERHREHQERPEALKSLNNALNVSVTFYNSIK 1038
WL EDG +A+AD E KL+ + +L +++R EH ERPEAL +LN LN S F K
Sbjct: 692 WLYEDGSDADADTYEKKLDGLKTLTSDLFKRVWEHNERPEALNALNTMLNQSSQFLTVAK 751
Query: 1039 NLSLNTNETEDLNLFSDIELKSLDTLSMVWFRVCWGFFFLLFKQDKGLDTLINETKVWKE 1098
NL+ +TN D +F+D E+++ L+ +I ET+ WK
Sbjct: 752 NLTKSTNPERD--VFTDGEVEA-------------------------LEKIIKETEEWKS 784
Query: 1099 KSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSKLW 1141
K +EQN+LKK + + LT++SI EK+ A++REV+YL NK +LW
Sbjct: 785 KMIEEQNKLKKYESVKLTVKSITEKMGAIDREVKYLVNKHRLW 827
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345491532|ref|XP_003426634.1| PREDICTED: hypoxia up-regulated protein 1-like isoform 2 [Nasonia vitripennis] gi|345491534|ref|XP_001606217.2| PREDICTED: hypoxia up-regulated protein 1-like isoform 1 [Nasonia vitripennis] gi|345491536|ref|XP_003426635.1| PREDICTED: hypoxia up-regulated protein 1-like isoform 3 [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 916 bits (2367), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/960 (51%), Positives = 654/960 (68%), Gaps = 48/960 (5%)
Query: 260 KISLVTLCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTP 319
K+ ++ L + LL+ +YG+AVMS+D+GSEWMK+AIVSPGVPMEIALNKESKRKTP
Sbjct: 6 KLPMMFLALLAIGLLS--SQAYGLAVMSIDIGSEWMKIAIVSPGVPMEIALNKESKRKTP 63
Query: 320 TLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADE 379
++F GERTFGEDAQ++GTRFP NS+ Y LDL+GK ID+P+VQL+K RFPYYDI AD
Sbjct: 64 VTISFRDGERTFGEDAQVVGTRFPKNSFSYILDLIGKPIDNPIVQLYKKRFPYYDIEADT 123
Query: 380 ERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSML 439
ER TIVF+ + + Y EEL+A LL+KA+E+A SAGQ INEAVI VPGYFNQ ER ++L
Sbjct: 124 ERNTIVFRLDKDTTYTPEELLAQLLYKAKEFAQNSAGQKINEAVITVPGYFNQAERLALL 183
Query: 440 KAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVV 499
+A ELA +KVLQL NDY+AVALNYGIF K+ N+T ++MFYDMGA STT ++V YQ +
Sbjct: 184 QAAELADIKVLQLFNDYSAVALNYGIFHHKEINDT-AHYIMFYDMGASSTTATVVGYQNI 242
Query: 500 KTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVA 559
KTKERGFVETHPQVS+LGVGYDRTLGGLEMQ+RLRD+L K+F+ MKKT VFENPRA+A
Sbjct: 243 KTKERGFVETHPQVSILGVGYDRTLGGLEMQLRLRDYLAKEFDAMKKTKNSVFENPRALA 302
Query: 560 KLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQAL 619
KLFKE+GRLKNVLSAN +H+AQIEGL+D+ DF+L VTR +FE L DLFDRV PV+ AL
Sbjct: 303 KLFKESGRLKNVLSANADHYAQIEGLLDDQDFRLQVTREKFEELCADLFDRVSNPVKTAL 362
Query: 620 KSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLST 679
++S + MD+ISQV+LVGAGTRVPKVQEK++ V ELSKN+NTDEAAALGAVYKAADLS
Sbjct: 363 ETSGLTMDIISQVVLVGAGTRVPKVQEKLSAFVKTELSKNINTDEAAALGAVYKAADLSQ 422
Query: 680 GFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGDFN 739
GFKVKKFITKD VL+PIQ+ F+R + K ++R LF N YPQKKI+TFNK+ DF+
Sbjct: 423 GFKVKKFITKDAVLFPIQIVFDRTVDD-KVKQVRRTLFSKMNAYPQKKIITFNKHNQDFS 481
Query: 740 FNVSYASEIEHLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESG 799
F V+YA E+++L E+IA +G IS ++GV+EA KH +E ESKGIKAHF+MDESG
Sbjct: 482 FEVNYA-ELDYLPKEEIAAIGNLNISTITLTGVAEALAKHAKEGGESKGIKAHFSMDESG 540
Query: 800 ILSLVNIELVVEKQEAA----ESPLSKLGNTLTSLFSRSKTDENEK---PINEAVDEGNK 852
IL+LVN+ELV EK A E SKLG+T++ LFS S E EK P E + ++
Sbjct: 541 ILNLVNVELVSEKTSIAADEEEGAFSKLGSTISKLFSGSNDKEPEKVEEPPKEDIKPVHE 600
Query: 853 TAEEPS-----KNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVS 907
E P + + + EE +N T+ D +KKP IVT+KEPI A E + G
Sbjct: 601 EPEYPGLKKEAEEKAKANNDSKPTEEKAENKTEKADKEKKPTIVTIKEPIEAKELKLGPQ 660
Query: 908 TLNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESK 967
L+ ++ S KL +LN + K ++E ALN+LES + DA+ KLE +EY + +++
Sbjct: 661 MLSNDKLATSQEKLQALNAYDKEKAKRESALNNLESFVIDAQQKLESDEYKAAIIAEDAE 720
Query: 968 TIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLVVPIWERHREHQERPEALKSLNNAL 1027
I +E++ WL E+G+ A A+ E KL ++ L ++ER EH+ERPEALK + + L
Sbjct: 721 KIKQACNEVSEWLYEEGFEAPAETYEQKLTDLQKLTGDLYERVFEHRERPEALKGMVSML 780
Query: 1028 NVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLSMVWFRVCWGFFFLLFKQDKGLD 1087
N S F ++++NL+++ +F+ +E+++ L+
Sbjct: 781 NGSRVFLDNMRNLNVSA------EIFTQVEIET-------------------------LE 809
Query: 1088 TLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSKLWMASLNK 1147
INET+ +++ K ++ K +P+V +R I K+ L+REV+YL NK+K+W
Sbjct: 810 KAINETQEYRDVVVKVTSETKLYEPVVYKVRDIANKMALLDREVKYLVNKAKIWKPKQEA 869
Query: 1148 KKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVDETTTPEDK 1207
K +T + E+K + DS+ + + K E + + T + P +TT E K
Sbjct: 870 TKNNTEETGENKTNSGDSEAETKTSDNKDKAESERDDSETIETEETLELPPSDTTQSEKK 929
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242024934|ref|XP_002432881.1| 150 kDa oxygen-regulated protein precursor, putative [Pediculus humanus corporis] gi|212518390|gb|EEB20143.1| 150 kDa oxygen-regulated protein precursor, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 909 bits (2350), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/911 (52%), Positives = 633/911 (69%), Gaps = 48/911 (5%)
Query: 259 MKISLVTLCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKT 318
M L LC +V+ + + ++ G+AVMSVD GSEWMKVAIVSPGVPMEIALNKESKRKT
Sbjct: 1 MASPLRGLCFLLVISVIVVNNTNGVAVMSVDFGSEWMKVAIVSPGVPMEIALNKESKRKT 60
Query: 319 PTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVAD 378
P +AF ER FGEDAQ I RFPSN YGY LDLLGK ID+P+V L+K RFPYY+I D
Sbjct: 61 PAFIAFRNDERLFGEDAQNIAVRFPSNGYGYLLDLLGKKIDNPLVNLYKERFPYYNIEED 120
Query: 379 EERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSM 438
RGT+VFK + N + EEL+ MLLHKA+E+A SAGQVI +AV++VPG+FNQ+ER+++
Sbjct: 121 PVRGTVVFKHDSNTKFTPEELIGMLLHKAKEFAEESAGQVITDAVLVVPGFFNQVERRAL 180
Query: 439 LKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQV 498
+ A L G+KVLQL+NDYTAVALNYGIF+ KDFN+T +++FYDMGA STT SIV+YQ+
Sbjct: 181 INAANLGGIKVLQLINDYTAVALNYGIFRSKDFNDTTQ-YILFYDMGASSTTASIVAYQM 239
Query: 499 VKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAV 558
VK K+RG +ET+PQ +V+GVGYDRTLGGLEMQ+RL+ L KKF E KKT D++ NPRA+
Sbjct: 240 VKQKDRGVLETNPQATVIGVGYDRTLGGLEMQLRLQKHLAKKFTENKKTKSDIYSNPRAM 299
Query: 559 AKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQA 618
AKLFKEAGR+KNVLSAN EHFAQ+EGL+DE DFK VTR E E L EDLF RV P+EQA
Sbjct: 300 AKLFKEAGRVKNVLSANVEHFAQVEGLLDEEDFKTHVTREELEKLCEDLFARVKNPIEQA 359
Query: 619 LKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 678
LK+S + MD+ISQVILVGAGTRVPK+QE +T +V EL KN+NTDEAA +GAVYKAAD+S
Sbjct: 360 LKTSGITMDIISQVILVGAGTRVPKIQEILTNIVKKELGKNINTDEAAVMGAVYKAADIS 419
Query: 679 TGFKVKKFITKDIVLYPIQVEFER-ESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD 737
TGFKVKKFI KD VL+P+QV F++ +E+ + K IK+ LF N YPQKKILTFNK+V D
Sbjct: 420 TGFKVKKFINKDAVLFPVQVTFQKANNETDEIKYIKKTLFNVMNPYPQKKILTFNKHVND 479
Query: 738 FNFNVSYASEIEHLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDE 797
FNFNV Y ++++L +I MLG +S + V + KH +N ESKGIKAHFAMDE
Sbjct: 480 FNFNVHYG-DMDYLPKNEIEMLGPLNLSLVHIHNVKDIIKKHEGKNVESKGIKAHFAMDE 538
Query: 798 SGILSLVNIELVVEK------QEAAESPLSKLGNTLTSLFSRSKTDENEKPINEA----- 846
SG+L L+N++ V EK +E ES L KLG++ T LF S + + A
Sbjct: 539 SGLLYLLNVDYVAEKTVTDEPEEEEESTLKKLGSSFTKLFGGSDSQSEDAAKKGAEESSE 598
Query: 847 ------VDEGNKTAEEPS--KNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPIS 898
D+ K++ + S KN + + +++ E+ T + KKPKIV +KE +S
Sbjct: 599 NLSEEKTDDEKKSSGKQSDGKNDENKDGKEKQGEDKQTGKNVTGTSGKKPKIVIIKENVS 658
Query: 899 ASETRYGVSTLNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYS 958
A+ GV L ++Q+E S K+++LN+ ++ K RKEK+ N+LES +FDA K+E + Y
Sbjct: 659 ATYEDLGVPPLTDEQMEDSFKKIEALNENDNLKQRKEKSRNALESFVFDALQKIESDMYV 718
Query: 959 SVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLVVPIWERHREHQERPE 1018
A +E + IV + E++NWL+E+ +NA+ADV + KL +I +L P+++R EH+ERPE
Sbjct: 719 QTATDDEKENIVKECQEVSNWLDEE-FNADADVYDAKLKQIKTLTGPLYKRVSEHEERPE 777
Query: 1019 ALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLSMVWFRVCWGFFFL 1078
AL +L++ +N S F +++K + + D +F+++E+ +
Sbjct: 778 ALAALHSMINGSQNFLDTVKTKTKEALDKGDEAIFTEVEINT------------------ 819
Query: 1079 LFKQDKGLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKS 1138
L+ +INET+ WK SE EQ++L + P +TI+SI EK+ AL+REV+YL NK+
Sbjct: 820 -------LEKVINETQEWKTNSELEQSKLPLTSPPKMTIKSITEKMAALDREVKYLVNKA 872
Query: 1139 KLWMASLNKKK 1149
KLW KK
Sbjct: 873 KLWRPKKTDKK 883
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383847076|ref|XP_003699181.1| PREDICTED: hypoxia up-regulated protein 1-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 900 bits (2325), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/936 (49%), Positives = 645/936 (68%), Gaps = 61/936 (6%)
Query: 260 KISLVTLCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTP 319
K+++ + S +++++TL +S G+AVMS+D+GSE MKVAIVSPGVPMEIALNKESKRKTP
Sbjct: 5 KLNMTIIWSLLIIVITLIHNSSGVAVMSIDIGSESMKVAIVSPGVPMEIALNKESKRKTP 64
Query: 320 TLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADE 379
+AF GER+FGEDAQ++G + P +S+ Y LDLLGKSID+P+VQL+K RFPYYDI++DE
Sbjct: 65 VTIAFRNGERSFGEDAQVVGIKSPQSSFSYILDLLGKSIDNPMVQLYKKRFPYYDIISDE 124
Query: 380 ERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSML 439
ER TI F+ + N Y EEL+A +LHK +E+A SA Q I+EAVI+VPG+FNQIER+++
Sbjct: 125 ERKTIAFRLDQNTTYTPEELLAQILHKGKEFAETSANQKISEAVIVVPGFFNQIERRALA 184
Query: 440 KAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVV 499
+A +LAG+KVLQL+NDYTA+ALNYGIF+ K+ N+T +VMFYDMGA STT ++VSYQ V
Sbjct: 185 QAADLAGIKVLQLINDYTAIALNYGIFRSKEINDT-AHYVMFYDMGASSTTATVVSYQNV 243
Query: 500 KTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVA 559
KTKE+GFVET+P VS+LGVGYDRTLGGLE+Q+RL+ L K+F+ + KT+ VF +P+A+A
Sbjct: 244 KTKEKGFVETNPHVSILGVGYDRTLGGLEVQLRLQHHLAKEFDALNKTSNSVFNSPKAMA 303
Query: 560 KLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQAL 619
KLFKEAGR+KNVLSAN +HFAQ+EGLI+E DFKL VTR + E L DLF+RV P+ AL
Sbjct: 304 KLFKEAGRVKNVLSANTDHFAQVEGLIEEHDFKLQVTREKLEQLCSDLFERVQDPINIAL 363
Query: 620 KSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLST 679
K+S + MDVISQV+LVGAGTR+PK+QE +++ + VELSKN+NTDEAA LGAVYKAADLS
Sbjct: 364 KTSGLTMDVISQVVLVGAGTRMPKIQEYLSQYLTVELSKNINTDEAATLGAVYKAADLSK 423
Query: 680 GFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGDFN 739
GFKVKKF+T+D VL+PIQ+ F+R ++ K +K+ LF N YPQKKI+TFNKY+ +F
Sbjct: 424 GFKVKKFVTRDAVLFPIQITFDRTVDN-KVKQVKKSLFSKMNPYPQKKIITFNKYLDNFQ 482
Query: 740 FNVSYASEIEHLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESG 799
F+++YA E+++L P ++A +G IS +SGV+EA KH +E AESKGIKAHFAMD+SG
Sbjct: 483 FHINYA-ELDYLPPHEVAAIGNTNISTIILSGVAEALDKHIKEGAESKGIKAHFAMDDSG 541
Query: 800 ILSLVNIELVVEKQEAA----ESPLSKLGNTLTSLFSRSKTDEN--EKPINEAVDEGNKT 853
IL+LVN+ELV EK + E S LG+T++ LF+ S+ E EKP+ E + ++
Sbjct: 542 ILNLVNVELVSEKSSSTSDEEEGTFSILGSTISKLFAGSEDKEGKAEKPVKEDIKPVHEE 601
Query: 854 AEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPK--------------IVTVKEPISA 899
E P ESQ+++ +++ K T DK IVT+KEPI A
Sbjct: 602 PEYP-------ESQKETEDKTKKQNETTTTEDKAANKTEKVEKEKEKKATIVTIKEPIKA 654
Query: 900 SETRYGVSTLNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSS 959
E + G L ++ S KL L+ + K R+E ALN+LE+ + DA+ +LE EEY+
Sbjct: 655 DEIKLGPQILFGDKLVDSRDKLHRLDVYDFEKTRRETALNNLETFIIDAQQRLESEEYAG 714
Query: 960 VAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLVVPIWERHREHQERPEA 1019
A E+++I+ EI+ WL EDG+ A A+V E KL+E+ L ++ER EH+ERPE
Sbjct: 715 AATSKEAESILKACSEISEWLYEDGFTATAEVYEEKLSELQKLTNDVYERVYEHRERPEV 774
Query: 1020 LKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLSMVWFRVCWGFFFLL 1079
LK + + LN S TF N++KNLSL++ ++F+ +E+++
Sbjct: 775 LKGMTSMLNASTTFLNNMKNLSLSS------DIFTQVEIET------------------- 809
Query: 1080 FKQDKGLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSK 1139
L+ +INET+ + + K + + + IR I +K+ L+REV+YL NK+K
Sbjct: 810 ------LEKVINETQEYYDTVVKSFAETALHESVTYKIRDIAKKMAVLDREVKYLINKAK 863
Query: 1140 LWMASLNKKKESTSKKKEDKPKNKDSDKTKPSETEQ 1175
+W + T+ E+ K+ ++ P Q
Sbjct: 864 IWRPKQDAATNHTASTSENATDTKEQSESVPKTDSQ 899
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345491538|ref|XP_003426636.1| PREDICTED: hypoxia up-regulated protein 1-like isoform 4 [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 894 bits (2310), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/954 (50%), Positives = 643/954 (67%), Gaps = 51/954 (5%)
Query: 260 KISLVTLCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTP 319
K+ ++ L + LL+ +YG+AVMS+D+GSEWMK+AIVSPGVPMEIALNKESKRKTP
Sbjct: 6 KLPMMFLALLAIGLLS--SQAYGLAVMSIDIGSEWMKIAIVSPGVPMEIALNKESKRKTP 63
Query: 320 TLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADE 379
++F GERTFGEDAQ++GTRFP NS+ Y LDL+GK ID+P+VQL+K RFPYYDI AD
Sbjct: 64 VTISFRDGERTFGEDAQVVGTRFPKNSFSYILDLIGKPIDNPIVQLYKKRFPYYDIEADT 123
Query: 380 ERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSML 439
ER TIVF+ + + Y EEL+A LL+KA+E+A SAGQ INEAVI VPGYFNQ ER ++L
Sbjct: 124 ERNTIVFRLDKDTTYTPEELLAQLLYKAKEFAQNSAGQKINEAVITVPGYFNQAERLALL 183
Query: 440 KAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVV 499
+A ELA +KVLQL NDY+AVALNYGIF K+ N+T ++MFYDMGA STT ++V YQ +
Sbjct: 184 QAAELADIKVLQLFNDYSAVALNYGIFHHKEINDT-AHYIMFYDMGASSTTATVVGYQNI 242
Query: 500 KTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVA 559
KTKERGFVETHPQVS+LGVGYDRTLGGLEMQ+RLRD+L K+F+ MKKT VFENPRA+A
Sbjct: 243 KTKERGFVETHPQVSILGVGYDRTLGGLEMQLRLRDYLAKEFDAMKKTKNSVFENPRALA 302
Query: 560 KLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQAL 619
KLFKE+GRLKNVLSAN +H+AQIEGL+D+ DF+L VTR +FE L DLFDRV PV+ AL
Sbjct: 303 KLFKESGRLKNVLSANADHYAQIEGLLDDQDFRLQVTREKFEELCADLFDRVSNPVKTAL 362
Query: 620 KSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLST 679
++S + MD+ISQV+LVGAGTRVPKVQEK++ V ELSKN+NTDEAAALGAVYKAADLS
Sbjct: 363 ETSGLTMDIISQVVLVGAGTRVPKVQEKLSAFVKTELSKNINTDEAAALGAVYKAADLSQ 422
Query: 680 GFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGDFN 739
GFKVKKFITKD VL+PIQ+ F+R + K ++R LF N YPQKKI+TFNK+ DF+
Sbjct: 423 GFKVKKFITKDAVLFPIQIVFDRTVDD-KVKQVRRTLFSKMNAYPQKKIITFNKHNQDFS 481
Query: 740 FNVSYASEIEHLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESG 799
F V+YA E+++L E+IA +G IS ++GV+EA KH +E ESKGIKAHF+MDESG
Sbjct: 482 FEVNYA-ELDYLPKEEIAAIGNLNISTITLTGVAEALAKHAKEGGESKGIKAHFSMDESG 540
Query: 800 ILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKTDEN-EKPINEAVDEGNKTAEEPS 858
IL+LVN+ELV EK A S K E E+P E + ++ E P
Sbjct: 541 ILNLVNVELVSEKTSIAADEEEG---------SNDKEPEKVEEPPKEDIKPVHEEPEYPG 591
Query: 859 -----KNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQ 913
+ + + EE +N T+ D +KKP IVT+KEPI A E + G L+ +
Sbjct: 592 LKKEAEEKAKANNDSKPTEEKAENKTEKADKEKKPTIVTIKEPIEAKELKLGPQMLSNDK 651
Query: 914 VEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKI 973
+ S KL +LN + K ++E ALN+LES + DA+ KLE +EY + +++ I
Sbjct: 652 LATSQEKLQALNAYDKEKAKRESALNNLESFVIDAQQKLESDEYKAAIIAEDAEKIKQAC 711
Query: 974 DEITNWLEEDGWNAEADVLENKLNEINSLVVPIWERHREHQERPEALKSLNNALNVSVTF 1033
+E++ WL E+G+ A A+ E KL ++ L ++ER EH+ERPEALK + + LN S F
Sbjct: 712 NEVSEWLYEEGFEAPAETYEQKLTDLQKLTGDLYERVFEHRERPEALKGMVSMLNGSRVF 771
Query: 1034 YNSIKNLSLNTNETEDLNLFSDIELKSLDTLSMVWFRVCWGFFFLLFKQDKGLDTLINET 1093
++++NL+++ +F+ +E+++ L+ INET
Sbjct: 772 LDNMRNLNVSA------EIFTQVEIET-------------------------LEKAINET 800
Query: 1094 KVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSKLWMASLNKKKESTS 1153
+ +++ K ++ K +P+V +R I K+ L+REV+YL NK+K+W K +T
Sbjct: 801 QEYRDVVVKVTSETKLYEPVVYKVRDIANKMALLDREVKYLVNKAKIWKPKQEATKNNTE 860
Query: 1154 KKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPSPSPVDETTTPEDK 1207
+ E+K + DS+ + + K E + + T + P +TT E K
Sbjct: 861 ETGENKTNSGDSEAETKTSDNKDKAESERDDSETIETEETLELPPSDTTQSEKK 914
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328784616|ref|XP_624153.3| PREDICTED: hypoxia up-regulated protein 1-like [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 890 bits (2301), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/948 (49%), Positives = 649/948 (68%), Gaps = 70/948 (7%)
Query: 255 KERGMKISLVTLCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKES 314
K G+ +S++ L ++ ++T +HS GIAVMS+D+GSE MKVAIVSPGVPMEIALNKES
Sbjct: 2 KPSGINMSIIWLL--LITIVTFIDHSNGIAVMSIDIGSESMKVAIVSPGVPMEIALNKES 59
Query: 315 KRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYD 374
KRKTP +AF GER+FGEDAQ++G R P NS+ Y LDLLGK ID+P+V+L+K RFPYYD
Sbjct: 60 KRKTPVTIAFRNGERSFGEDAQVVGIRSPQNSFSYILDLLGKYIDNPIVELYKKRFPYYD 119
Query: 375 IVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIE 434
I++DEER TI F+ ++N Y EEL+A +LHK +E+A SAGQ I+EAVI VPG+FNQIE
Sbjct: 120 IISDEERKTITFRLDENTTYTPEELLAQILHKGKEFAENSAGQKISEAVITVPGFFNQIE 179
Query: 435 RQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIV 494
R ++++A +LAG+KVLQL+NDYTAVALNYGIF+ K+ N+T +VMFYDMGA STT +IV
Sbjct: 180 RTALMQAADLAGIKVLQLINDYTAVALNYGIFRSKEINDT-AHYVMFYDMGASSTTATIV 238
Query: 495 SYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFEN 554
SYQ VKTKE+GF+ET+P V++LGVGYDRTLGGLE+QIRL+ +L K+F+ + KT VF N
Sbjct: 239 SYQNVKTKEKGFIETNPHVTILGVGYDRTLGGLEVQIRLQHYLAKEFDALNKTKNSVFSN 298
Query: 555 PRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYP 614
RA+AKLFKEAGR+KNVLSAN +HFAQIEGLIDE+DF+L VTR + E L DLF+RV P
Sbjct: 299 VRAMAKLFKEAGRVKNVLSANTDHFAQIEGLIDEVDFRLQVTREKLEQLCTDLFERVTNP 358
Query: 615 VEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKA 674
++ ALK+S + MD ISQV+LVGA TR+PK+QE +++ + +ELSKN+NTDEAA LGAVYKA
Sbjct: 359 IKIALKTSGLTMDAISQVVLVGAATRMPKIQEHLSQYLTIELSKNINTDEAAVLGAVYKA 418
Query: 675 ADLSTGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKY 734
ADLS GFKVKKFITKD VL+PI + F+R + + K +K+ LF N YPQKKI+TFNKY
Sbjct: 419 ADLSKGFKVKKFITKDAVLFPIHIVFDR-TVNNRVKQVKKSLFNKMNPYPQKKIITFNKY 477
Query: 735 VGDFNFNVSYASEIEHLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFA 794
+F F+++YA E+++L +IA +G +S +SG++EA KH ++ AESKGIKAHFA
Sbjct: 478 TENFQFHINYA-ELDYLPFNEIAAIGNFNLSTITLSGITEALDKHLKDGAESKGIKAHFA 536
Query: 795 MDESGILSLVNIELVVEKQEAA----ESPLSKLGNTLTSLFS--RSKTDENEKPINEAVD 848
MDESGIL+LVN+ELV EK A ES S LG+T++ LF+ K ++E+P+ E +
Sbjct: 537 MDESGILNLVNVELVSEKSSLAPDEEESTFSILGSTISKLFAGLEDKEGKSEEPLKEDIK 596
Query: 849 EGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKK---------------PKIVTV 893
++ +E +E Q+++ ++ K D K IVT+
Sbjct: 597 PVHEESE-------YSELQKETEDKMKKKNDSMITEDNKIVNKTEKIEKEKEKKATIVTI 649
Query: 894 KEPISASETRYGVSTLNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLE 953
KEPI A E + G L+ ++ KS +KL L+ + K ++E ALN+LE+ + DA+ KLE
Sbjct: 650 KEPIKADEIKLGSQILSGDKLVKSQAKLHRLDVYDFEKTKRETALNNLETFIIDAQQKLE 709
Query: 954 LEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLVVPIWERHREH 1013
EEY++VA E+++I+ EI+ WL EDG++ A++ E KL+ + L ++ER EH
Sbjct: 710 SEEYATVATSQEAESILKACSEISEWLYEDGFSVTAEIYEEKLSYLQKLTNDVYERVYEH 769
Query: 1014 QERPEALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLSMVWFRVCW 1073
+ERPEALK + + LN S TF N+++NLSL++ +F+ IE+++
Sbjct: 770 RERPEALKGMTSMLNASTTFLNNMRNLSLSS------EIFTQIEIET------------- 810
Query: 1074 GFFFLLFKQDKGLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRY 1133
L+ +INET+ + K + +P+ +R IV K+ L+REV Y
Sbjct: 811 ------------LEKVINETQEYYNTIVKSFTETALYEPVKYKVRDIVNKMALLDREVNY 858
Query: 1134 LENKSKLWMASLNKKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQ 1181
L NK+K+W K+ES + E N+ + +K SKPE Q
Sbjct: 859 LINKAKIWRP----KQESITNHTES--INETATNSKEGPESDSKPESQ 900
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380029680|ref|XP_003698495.1| PREDICTED: hypoxia up-regulated protein 1-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 890 bits (2299), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/948 (49%), Positives = 652/948 (68%), Gaps = 70/948 (7%)
Query: 255 KERGMKISLVTLCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKES 314
K G+ +S++ L ++ ++T +HS GIAVMS+D+GSE MKVAIVSPGVPMEIALNKES
Sbjct: 2 KPSGINMSIIWLL--LITIVTFIDHSNGIAVMSIDIGSESMKVAIVSPGVPMEIALNKES 59
Query: 315 KRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYD 374
KRKTP +AF GER+FGEDAQ++G R P NS+ Y LDLLGK ID+P+V+L+K RFPYYD
Sbjct: 60 KRKTPVTIAFRNGERSFGEDAQVVGIRSPQNSFSYILDLLGKYIDNPIVELYKKRFPYYD 119
Query: 375 IVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIE 434
I++DEER TI F+ ++N Y EEL+A +LHK +E+A SAGQ I+EAVI VPG+FNQIE
Sbjct: 120 IISDEERKTITFRLDENITYTPEELLAQILHKGKEFAENSAGQKISEAVITVPGFFNQIE 179
Query: 435 RQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIV 494
R ++++A +LAG+KVLQL+NDYTAVALNYGIF+ K+ N+T +VMFYDMGA STT +IV
Sbjct: 180 RTALMQAADLAGIKVLQLINDYTAVALNYGIFRSKEINDT-AHYVMFYDMGASSTTATIV 238
Query: 495 SYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFEN 554
SYQ +KTKE+GF+ET+P V++LGVGYDRTLGGLE+QIRL+ +L K+F+ + KT VF N
Sbjct: 239 SYQNIKTKEKGFIETNPHVTILGVGYDRTLGGLEVQIRLQHYLAKEFDALNKTKNSVFSN 298
Query: 555 PRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYP 614
RA+AKLFKEAGR+KNVLSAN +HFAQIEGLIDE+DF+L VTR + E L DLF+RV P
Sbjct: 299 VRAMAKLFKEAGRVKNVLSANTDHFAQIEGLIDEVDFRLQVTREKLEQLCTDLFERVANP 358
Query: 615 VEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKA 674
++ ALK+S + MD ISQV+LVGA TR+PK+QE +++ + VELSKN+NTDEAA LGAVYKA
Sbjct: 359 IKIALKTSGLTMDAISQVVLVGAATRMPKIQEHLSQYLTVELSKNINTDEAAVLGAVYKA 418
Query: 675 ADLSTGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKY 734
ADLS GFKVKKF+TKD VL+PI + F+R + + K +K+ LF N YPQKKI+TFNKY
Sbjct: 419 ADLSKGFKVKKFVTKDAVLFPIHIVFDR-TVNNRIKQVKKSLFNKMNPYPQKKIITFNKY 477
Query: 735 VGDFNFNVSYASEIEHLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFA 794
+F F+++YA E+++L +IA +G +S +SG++EA KH ++ AE+KGIKAHFA
Sbjct: 478 TENFQFHINYA-ELDYLPFNEIAAIGNFNLSTITLSGITEALDKHLKDGAENKGIKAHFA 536
Query: 795 MDESGILSLVNIELVVEKQEAA----ESPLSKLGNTLTSLFS--RSKTDENEKPINEAVD 848
MDESGIL+LVN+ELV EK A ES S LG+T++ LF+ K ++E+P+ E +
Sbjct: 537 MDESGILNLVNVELVSEKSSLAPDEEESTFSILGSTISKLFAGLEDKEGKSEEPLKEDIK 596
Query: 849 EGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKK---------------PKIVTV 893
++ +E +E Q+++ ++ K D K IVT+
Sbjct: 597 PVHEESE-------YSELQKETEDKMKKKNDSMITEDNKIVNKTEKIEKEKEKKATIVTI 649
Query: 894 KEPISASETRYGVSTLNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLE 953
KEPI A E + G L+ ++ +SL+KL L+ + K ++E ALN+LE+ + DA+ KLE
Sbjct: 650 KEPIKADEIKLGSQILSGDKLVESLAKLHRLDVYDFEKTKRETALNNLETFIIDAQQKLE 709
Query: 954 LEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLVVPIWERHREH 1013
EEY+ VA E+++I+ EI+ WL EDG++ A++ E KL+ + L ++ER EH
Sbjct: 710 SEEYAVVATSQEAESILKACSEISEWLYEDGFSVTAEIYEEKLSYLQKLTNDVYERVYEH 769
Query: 1014 QERPEALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLSMVWFRVCW 1073
+ERPEALK + + LN S TF N+++NLSL++ +F+ IE+++
Sbjct: 770 RERPEALKGMTSMLNASTTFLNNMRNLSLSS------EIFTQIEIET------------- 810
Query: 1074 GFFFLLFKQDKGLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRY 1133
L+ +INET+ + + K + +P+ +R IV K+ L+REV Y
Sbjct: 811 ------------LEKVINETQEYYDTIVKSFTETALYEPVKYKVRDIVNKMALLDREVNY 858
Query: 1134 LENKSKLWMASLNKKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQ 1181
L NK+K+W K+EST+ E+ + + K +P SKPE +
Sbjct: 859 LINKAKIWRP----KQESTTNHTENINETTTNSKEEPE--SDSKPESE 900
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328711504|ref|XP_001946466.2| PREDICTED: hypoxia up-regulated protein 1-like isoform 1 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 883 bits (2282), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/992 (49%), Positives = 660/992 (66%), Gaps = 70/992 (7%)
Query: 259 MKISLVTLCSSVVLLLTLFEH---SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESK 315
M I +++ + L L H +G+AVMSVD+GSEWMKVAIVSPGVPMEIALNKESK
Sbjct: 1 MGIPFWKCVTALTMFLVLSLHIANVHGLAVMSVDIGSEWMKVAIVSPGVPMEIALNKESK 60
Query: 316 RKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDI 375
RKTPT +AF GERTFGEDA +G RFPSN Y YFLDLLGK ID+P+V L+K RFPYY+I
Sbjct: 61 RKTPTAIAFRNGERTFGEDALTVGVRFPSNCYIYFLDLLGKKIDNPIVDLYKKRFPYYNI 120
Query: 376 VADEERGTIVFKTNDNELYHV-EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIE 434
+ D +R T++FK +++ Y EELVAM+L KARE+A SAGQ INEAVI VPGYF Q E
Sbjct: 121 IPDPKRNTVLFKHGESDDYFSPEELVAMMLEKAREFAQDSAGQAINEAVISVPGYFGQAE 180
Query: 435 RQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIV 494
R +MLKA E+AG+KVLQL+N YTA ALNYGIF+ K FNET P+++MFYDMGA+ T VS+V
Sbjct: 181 RTAMLKAAEIAGIKVLQLINSYTAAALNYGIFRTKSFNETTPMYMMFYDMGAYGTQVSVV 240
Query: 495 SYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFEN 554
SYQ++K+K+R E P ++VLGVGY+R LGGLEMQ+RLRD+L KFN +K T DV +N
Sbjct: 241 SYQLIKSKDRIAPELQPHLAVLGVGYERNLGGLEMQLRLRDYLAAKFNNLKLTPNDVTKN 300
Query: 555 PRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYP 614
R++AKLFKEAGRLKNVLSAN EHFAQIEGLIDE D ++ VTR E E L +DLFD+V P
Sbjct: 301 TRSMAKLFKEAGRLKNVLSANTEHFAQIEGLIDEKDMRIKVTREELEELCKDLFDKVVLP 360
Query: 615 VEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVV--GVELSKNLNTDEAAALGAVY 672
++AL++S + +++I QV+L GAGTRVP+VQ+++ K + L ++LNTDEA+ALGA Y
Sbjct: 361 AKRALEASGLTIELIEQVMLSGAGTRVPRVQDRLVKDLKSNQPLGRSLNTDEASALGAAY 420
Query: 673 KAADLSTGFKVKKFITKDIVLYPIQVEFERE--SESGDTKIIKRMLFGPSNTYPQKKILT 730
KAADLS GFKVK FITKD L+PIQV F++E E+ K +KR+LFG N YPQ+KI+T
Sbjct: 421 KAADLSNGFKVKAFITKDATLFPIQVTFDKEVIDENKAAKQVKRILFGHMNPYPQRKIIT 480
Query: 731 FNKYVGDFNFNVSYASEIEHLNPEQIAMLGTKQISKFDVSGVSEAFGKHN-EENAESKGI 789
FNK+ DF+F V YA E+ HL+ +I LG+ +S ++GV +A+ K+ +E A++KGI
Sbjct: 481 FNKHQQDFDFTVGYA-ELGHLDENEIKCLGSLSLSNIKLNGVRDAYSKYQGQEGADTKGI 539
Query: 790 KAHFAMDESGILSLVNIELVVEKQEAA----ESPLSKLGNTLTSLF-SRSKTDENEKPIN 844
KAHFAMD+SG+L L N+EL+VEK A ES LSK+GNT+++LF + + EKP++
Sbjct: 540 KAHFAMDDSGLLVLQNVELLVEKTVTADTEEESTLSKIGNTISNLFKGPEEVLKEEKPVH 599
Query: 845 EAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTP--DADKKPKIVTVKEPISASET 902
EA +E + + N+ Q ++ E VK P D+ K K+VTVKE I +
Sbjct: 600 EAPEEDPISQAPNNTTNNTDTFDQTNSTEQVKLNDTIPISDSKKNLKVVTVKETIDVNHE 659
Query: 903 RYGVSTLNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAA 962
V + ++ S++K+ L +I+ AK RKE +LN+LE+ + + + KLE +YSS A
Sbjct: 660 YLFVLPAQDDDLQSSINKIAGLKEIDLAKSRKETSLNNLETAIIETREKLEQPDYSSSAT 719
Query: 963 PNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLVVPIWERHREHQERPEALKS 1022
E+++I+DK EI++WLE+DG+ AEA+VL++K +++ +V+P+WER EH ERP L++
Sbjct: 720 EIETRSILDKCSEISDWLEDDGFGAEAEVLDSKFDDLKKIVLPVWERTFEHAERPSRLEA 779
Query: 1023 LNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLSMVWFRVCWGFFFLLFKQ 1082
LN+ALN S +F IKN +L D F+ +E+ +
Sbjct: 780 LNSALNNSNSFLEKIKNTTL------DDTPFTQVEIDT---------------------- 811
Query: 1083 DKGLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSKLWM 1142
LD LI+E WK+K +EQ +L KS VLTI++I K ++ERE+RYL K W
Sbjct: 812 ---LDKLISEITSWKDKQVEEQEKLPKSVDPVLTIQTIAIKHSSIEREMRYLMTKFTSWK 868
Query: 1143 ASLNKKK------ESTSKKKEDKPKNKDSDKT----------KPSETEQSKPEEQPAGDQ 1186
++ T +K P+ +D+D T K + E S E A +
Sbjct: 869 PKKKEEPKVKAPTSQTDNEKAKTPEEQDNDSTVKTNAHDDVDKSTAHEPSNTIEDNAESE 928
Query: 1187 EPL---TPKPSPSPVDETTTPEDK---TKTEL 1212
PL PKP+ P+ E T E+K T TEL
Sbjct: 929 SPLKTDKPKPTELPIVEPTKTEEKRDDTHTEL 960
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|403183091|gb|EJY57847.1| AAEL017263-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 880 bits (2273), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/955 (48%), Positives = 628/955 (65%), Gaps = 49/955 (5%)
Query: 265 TLCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAF 324
L + V L L + G AVMSVDLGSEWMK+ +VSPGVPMEIALNKESKRKTPT +AF
Sbjct: 13 CLLLATVAFLALLNPTNGAAVMSVDLGSEWMKIGVVSPGVPMEIALNKESKRKTPTTIAF 72
Query: 325 HKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTI 384
G+R GEDAQ +G RFP+N+YGY +DLLGK++D P+VQL++ RFPYYDI+ D R T+
Sbjct: 73 RNGDRLIGEDAQTLGVRFPANNYGYLIDLLGKTVDHPMVQLYRKRFPYYDIIEDPTRKTV 132
Query: 385 VFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGEL 444
VFK N +E Y +EEL+A LL A+ YA S GQ I E VI+VPG+F Q ERQ+++ A +L
Sbjct: 133 VFK-NGDEQYTIEELIAQLLQVAKGYAEDSTGQSITECVIVVPGFFGQAERQALVSAAKL 191
Query: 445 AGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKER 504
A LKVLQL+NDYTAV LNYGIF+RK+FNET + +FYDMGA+ TT S++SYQ+VK K
Sbjct: 192 ANLKVLQLINDYTAVGLNYGIFRRKEFNETAQ-YFVFYDMGAYKTTASVISYQLVKDK-- 248
Query: 505 GFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKE 564
E P V VLGVGYDRTLGGLEMQ+RLRD+LG++FN+M KT DVF NPRA+AKLFKE
Sbjct: 249 ATKEILPVVQVLGVGYDRTLGGLEMQVRLRDYLGQQFNKMGKTKTDVFTNPRAMAKLFKE 308
Query: 565 AGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAV 624
AGRLKNVLSAN EH+AQIEGL+DE DF+LLVTR +FE L +DLF R+ P+++AL S +
Sbjct: 309 AGRLKNVLSANTEHYAQIEGLLDEQDFRLLVTRDQFEELCKDLFARITAPIDRALSLSGL 368
Query: 625 PMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKVK 684
+D+++QV+L G TRVPKVQE + + EL+KNLN DEAA +GAVY+AADL+TGFKVK
Sbjct: 369 TLDIVNQVVLFGGNTRVPKVQEILKAHIKQELAKNLNADEAACMGAVYRAADLATGFKVK 428
Query: 685 KFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSY 744
KF+ KD VL+PIQV F RE ESG +++++R LFG N YPQKK++TFNK+ DF+F V Y
Sbjct: 429 KFVVKDAVLFPIQVAFAREGESGQSRLVRRTLFGAMNAYPQKKVITFNKHTDDFDFAVDY 488
Query: 745 ASEIEHLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLV 804
A + +I LG+ ++K ++ V++ H +N ESKGIKAHF +D+SG+ SL
Sbjct: 489 ADLESVVGKAEIENLGSLNLTKVSLTKVAKKANAHKADNVESKGIKAHFMLDDSGLFSLA 548
Query: 805 NIELVVEKQ--EAAESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKT-AEEPSKNV 861
N+ELV EK E ES L KLGNT++ LFS D E E E KT +EE S +
Sbjct: 549 NVELVFEKTVVEEDESTLQKLGNTISKLFS---GDSKEDATTEGEKEAEKTSSEEKSNDA 605
Query: 862 NSTESQQQSAE-ESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSK 920
E+ S + E+ KN T+ KPKIVT+KE I + +S L Q E S+ K
Sbjct: 606 TKAENSTLSGDSEAAKNKTE------KPKIVTIKEEIPSRVEVLYISPLEGSQYEASIKK 659
Query: 921 LDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWL 980
+ +LN IE +K R+E ALN+LES + DA+ KL+ EEYSS A E+ +I E++ WL
Sbjct: 660 IKALNDIEESKKRRETALNALESFVIDAQVKLDEEEYSSCATQEEADSIRKHCSEVSEWL 719
Query: 981 EEDGWNAEADVLENKLNEINSLVVPIWERHREHQERPEALKSLNNALNVSVTFYNSIKNL 1040
EDG +A+A+ E KL+E+ + ++ RH EH+ERPEAL +L + + F + +N
Sbjct: 720 YEDGSDADAETYEKKLDELQTAANVVYARHWEHKERPEALSALKKMIEGADGFLDKARNF 779
Query: 1041 SLNTNETEDLNLFSDIELKSLDTLSMVWFRVCWGFFFLLFKQDKGLDTLINETKVWKEKS 1100
+ N +D +F+ +E +DTL V I ET W++
Sbjct: 780 TKEGNPEKD--VFTQVE---IDTLERV----------------------IKETIEWEKVE 812
Query: 1101 EKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSKLWMASLNKKKESTSKKKEDKP 1160
EQ ++ ++ P+ LT++ I +K+ L+REV+YL NK KLW + +K K
Sbjct: 813 VAEQKKIARNQPVRLTVKDITDKMALLDREVKYLVNKLKLWRPKVKPTPPPKVEKNTSKE 872
Query: 1161 KNKDSDKTKPSE---TEQSKPEEQPAGDQEPLTPKPSPSPVDETTTPEDKTKTEL 1212
+ +++++ E E++ + + +EP + PS +E++ ED TEL
Sbjct: 873 EEQNTEEIVAEEEQVIEETPKQSEEEASEEPNVDEIKPSKTEESS--EDDQHTEL 925
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350410432|ref|XP_003489043.1| PREDICTED: hypoxia up-regulated protein 1-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 874 bits (2258), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/941 (49%), Positives = 651/941 (69%), Gaps = 55/941 (5%)
Query: 260 KISLVTLCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTP 319
K+++ + ++ + + ++S G+AVMS+D+GSE MKVAIVSPGVPMEIALNKESKRKTP
Sbjct: 5 KLNMSIIWLLLITIASFIDYSNGVAVMSIDMGSESMKVAIVSPGVPMEIALNKESKRKTP 64
Query: 320 TLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADE 379
+AF GER+FGEDAQ++G R P NS+ Y LDLLGKSID+P+V+L+K RFPYY I++D+
Sbjct: 65 VTIAFRNGERSFGEDAQVVGIRSPQNSFSYILDLLGKSIDNPMVELYKKRFPYYHIISDD 124
Query: 380 ERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSML 439
ER TI F+ ++N Y EEL+A +LHK +E+A SAGQ I+EAVI VPG+FNQIER++++
Sbjct: 125 ERKTIAFRLDENTTYTPEELLAQILHKGKEFAENSAGQKISEAVITVPGFFNQIERRALM 184
Query: 440 KAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVV 499
+A +LAG+KVLQL+NDYTAVALNYGIF+ K+ N+T +VMFYDMGA STT +IVSYQ V
Sbjct: 185 QAADLAGIKVLQLINDYTAVALNYGIFRSKEINDT-AHYVMFYDMGASSTTATIVSYQNV 243
Query: 500 KTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVA 559
KTKE+GFVET+P V++LGVGYDR LGGLE+QIRL+ L K+F+ + KTT VF N RA+A
Sbjct: 244 KTKEKGFVETNPHVTILGVGYDRILGGLEVQIRLQHHLAKEFDALNKTTSSVFSNSRAMA 303
Query: 560 KLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQAL 619
KLFKEAGR+KNVLSAN +HFAQIEGLI+E DF+L VTR + E L DLF+RV P++ AL
Sbjct: 304 KLFKEAGRVKNVLSANTDHFAQIEGLIEEHDFRLQVTRDKLEELCADLFERVANPIKIAL 363
Query: 620 KSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLST 679
K+S + MDVISQV+LVGA TR+PK+QE +++ + VELSKN+NTDEAAALGAVYKAADLS
Sbjct: 364 KTSGLTMDVISQVVLVGAATRMPKIQEHLSQYLTVELSKNINTDEAAALGAVYKAADLSK 423
Query: 680 GFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGDFN 739
GFKVKKF+TKD VL+PI + F+R ++ K +K+ LF N YPQKKI+TFNKY +F
Sbjct: 424 GFKVKKFVTKDAVLFPIHIVFDRTVDN-RVKQVKKSLFSKMNPYPQKKIITFNKYTENFQ 482
Query: 740 FNVSYASEIEHLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESG 799
F+++YA E+++L+P +IA++G +S +SG++EA KH ++ AESKGIKAHFAMDESG
Sbjct: 483 FHINYA-ELDYLSPNEIAVIGNFNLSTITLSGINEALDKHAKDGAESKGIKAHFAMDESG 541
Query: 800 ILSLVNIELVVEKQEAA----ESPLSKLGNTLTSLFSRS-----KTDENEKPINEAVDEG 850
IL+LVN+ELV EK +A E S LG+T++ LF+ S KT+E+ K + V E
Sbjct: 542 ILNLVNVELVSEKSSSAPDEEEGTFSILGSTISKLFAGSEDKDGKTEESLKEDTKPVHEE 601
Query: 851 NKTAEEPSKNVNSTESQQQS--AEESVKN--ATQTPDADKKPKIVTVKEPISASETRYGV 906
+ ++ + T+ + +S AE+ N + +KKP I+T+KEPI A E + G
Sbjct: 602 PEYSDLKKEAEEKTKKKNESTIAEDKTLNKTEKVEKEKEKKPTIITIKEPIKADEIKLGS 661
Query: 907 STLNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNES 966
L+ ++ +S KL L+ + K ++E ALN+LE+ + DA+ KLE EEY++ A E+
Sbjct: 662 QILSGDKLVESREKLHRLDVYDFEKTKRETALNNLETFIIDAQQKLESEEYAAAATSQEA 721
Query: 967 KTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLVVPIWERHREHQERPEALKSLNNA 1026
+ I+ EI+ WL EDG++ A++ E KL ++ L ++ER EH+ERPE LK + +
Sbjct: 722 ENILKACSEISEWLYEDGFSVTAEIYEEKLLQLQKLTNDVYERVYEHRERPEVLKGMTSM 781
Query: 1027 LNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLSMVWFRVCWGFFFLLFKQDKGL 1086
LN S TF N+++NLSL++ +F+ +E+++ L
Sbjct: 782 LNGSTTFLNNMRNLSLSS------EIFTQVEIET-------------------------L 810
Query: 1087 DTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSKLWMASLN 1146
+ +INET+ + + K + + + +R I K+ L+REV+YL NK+K+W
Sbjct: 811 EKVINETQEYYDTIIKSFAETALYETVKYKVRDIANKMALLDREVKYLINKAKIW----R 866
Query: 1147 KKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQE 1187
K+ES + E +N + K P +S+P + D E
Sbjct: 867 PKQESATNHTESTNENATNTKEGP----ESEPVLKSTADSE 903
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1212 | ||||||
| FB|FBgn0023529 | 923 | CG2918 [Drosophila melanogaste | 0.644 | 0.846 | 0.496 | 3.2e-210 | |
| UNIPROTKB|E1B748 | 1002 | HYOU1 "Uncharacterized protein | 0.471 | 0.569 | 0.522 | 2.1e-180 | |
| UNIPROTKB|E2RB31 | 996 | HYOU1 "Uncharacterized protein | 0.515 | 0.627 | 0.493 | 1.9e-179 | |
| UNIPROTKB|F1SAI8 | 1000 | HYOU1 "Uncharacterized protein | 0.471 | 0.571 | 0.521 | 2.7e-178 | |
| UNIPROTKB|E9PL22 | 937 | HYOU1 "Hypoxia up-regulated pr | 0.623 | 0.806 | 0.451 | 4.6e-174 | |
| UNIPROTKB|F1NY05 | 986 | HYOU1 "Hypoxia up-regulated pr | 0.627 | 0.771 | 0.448 | 1.2e-169 | |
| UNIPROTKB|F1NJZ5 | 980 | HYOU1 "Hypoxia up-regulated pr | 0.607 | 0.751 | 0.446 | 1.4e-164 | |
| ZFIN|ZDB-GENE-030131-5344 | 980 | hyou1 "hypoxia up-regulated 1" | 0.729 | 0.902 | 0.413 | 5.8e-163 | |
| UNIPROTKB|Q5ZLK7 | 1002 | HYOU1 "Hypoxia up-regulated pr | 0.608 | 0.736 | 0.449 | 1.1e-161 | |
| UNIPROTKB|F1LN18 | 999 | Hyou1 "Hypoxia up-regulated pr | 0.597 | 0.724 | 0.449 | 2.3e-159 |
| FB|FBgn0023529 CG2918 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1911 (677.8 bits), Expect = 3.2e-210, Sum P(2) = 3.2e-210
Identities = 400/805 (49%), Positives = 548/805 (68%)
Query: 280 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 339
S G AVMSVDLGSEWMKV +VSPGVPMEIALN+ESKRKTP ++AF G RT GEDAQ IG
Sbjct: 17 SQGAAVMSVDLGSEWMKVGVVSPGVPMEIALNRESKRKTPAILAFRDGTRTIGEDAQTIG 76
Query: 340 TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEEL 399
+ P+++YGY LDLLGK+ID+P+V L++ RFPYY+IV D ER T+VF+ +D + + VEEL
Sbjct: 77 IKDPNSAYGYLLDLLGKTIDNPIVDLYRKRFPYYNIVGDPERNTVVFRKSDTDEFSVEEL 136
Query: 400 VAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAV 459
VA LL KA+++A S Q I E V+ VPGYF Q ER+++L A +LA LKVLQL+NDY AV
Sbjct: 137 VAQLLVKAKQFAQESVQQPITECVLTVPGYFGQAEREALLSAAQLANLKVLQLINDYAAV 196
Query: 460 ALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVG 519
ALNYG+F R + NET + +FYDMGA+ T+ ++VSYQ+VK K+ E +P V VLGVG
Sbjct: 197 ALNYGVFHRGEINETAQ-YFLFYDMGAYKTSAAVVSYQLVKDKQTR--EINPVVQVLGVG 253
Query: 520 YDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHF 579
YDRTLGGLE+Q+RLRD+L ++FN +KKT DV +PRA+AKLFKEAGRLKNVLSAN E F
Sbjct: 254 YDRTLGGLEIQLRLRDYLAQEFNALKKTKTDVTTSPRALAKLFKEAGRLKNVLSANTEFF 313
Query: 580 AQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGT 639
AQIE LI++IDFKL VTR + E L EDL+ R P+E+AL SS + +DVI+QVIL G GT
Sbjct: 314 AQIENLIEDIDFKLPVTREKLEQLCEDLWPRATKPLEEALASSHLSLDVINQVILFGGGT 373
Query: 640 RVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVE 699
RVP+VQE I V+ EL KNLN DE+A +GAVYKAADLS GFKVKKF+ KD L+P+QV
Sbjct: 374 RVPRVQETIKAVIKQELGKNLNADESATMGAVYKAADLSAGFKVKKFVVKDATLFPLQVS 433
Query: 700 FERESESGDT-KIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQIAM 758
FER+ G K +KR LF N YPQKK++TFNK+ DF F V+YA +++ + E+IA
Sbjct: 434 FERDPGDGAAVKQVKRALFALMNPYPQKKVITFNKHTDDFEFYVNYA-DLDRYSKEEIAA 492
Query: 759 LGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQ----E 814
LG+ ++K + V E K +E ++KGIKA+F +D+SGI +E V EKQ +
Sbjct: 493 LGSLNVTKVQLKQVKELLEKSKKELVDNKGIKAYFYLDDSGIFRCTGVEYVYEKQKPEDD 552
Query: 815 AAE-SPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKNVNSTXXXXXXXXX 873
A E S LSK G+TL+ LF++ + EK N +E EEPSK+ ++
Sbjct: 553 ADEDSTLSKFGSTLSKLFTK---EGEEKKDNSEQEEAANAGEEPSKSEDNEKAKEEDASK 609
Query: 874 XVKNATQTP-DADKKP---KIVTVKEPIS-ASETRYGVSTLNEKQVEKSLSKLDSLNQIE 928
K+ T D + K K+VTVK P++ S+T++ V + ++S++KL ++N+ E
Sbjct: 610 EQKSEESTKQDTEAKNETIKLVTVKSPVTYESQTQFVVPLVGSAY-DQSVAKLAAINKAE 668
Query: 929 HAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAE 988
+VR E A N+LE+ + + + KL+ E Y+ A E + ++ + + WL ED + +
Sbjct: 669 EQRVRLESAFNALEAHIIEVQQKLDEESYAKCATAEEKEKLLAECSTLGEWLYEDLEDPK 728
Query: 989 ADVLENKLNEINSLVVPIWERHREHQERPEALKSLNNALNVSVTFYNSIKNLSLNTNETE 1048
A++ E KL ++ L RH EH+ERPEA+K+L ++ + F + +NL+ +TN +
Sbjct: 729 AEIYEEKLAQLKKLSNVFLARHWEHEERPEAIKALKGMIDGAEKFLVTGRNLTKDTNPEK 788
Query: 1049 DLNLFSDIELKSLD---TLSMVWFR 1070
D+ F+ +E+ +LD T + W +
Sbjct: 789 DV--FTQVEIDTLDKVITETNAWLK 811
|
|
| UNIPROTKB|E1B748 HYOU1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1451 (515.8 bits), Expect = 2.1e-180, Sum P(3) = 2.1e-180
Identities = 308/589 (52%), Positives = 409/589 (69%)
Query: 283 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRF 342
+AVMSVDLGSE MKVAIV PGVPMEI LNKES+RKTP V + ER FG+ A + +
Sbjct: 33 LAVMSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVTVTLKENERFFGDSAASMAIKN 92
Query: 343 PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAM 402
P + YF LLGK ++P V L+K+RFP +++ D +R T+ F+ + + EE+++M
Sbjct: 93 PKATLRYFQHLLGKQENNPHVALYKARFPEHELGFDPQRQTVYFQISPQLQFSPEEVLSM 152
Query: 403 LLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALN 462
LL+ +R A A Q I +AVI VP +FNQ ER+++L+A +AGLKVLQL+ND TA AL+
Sbjct: 153 LLNYSRSLAEDFAEQPIKDAVITVPAFFNQAERRAVLQAARMAGLKVLQLINDNTATALS 212
Query: 463 YGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 522
YG+F+RKD N T ++MFYDMG+ ST +IV+YQ VKTK+ G PQ+ + GVG+DR
Sbjct: 213 YGVFRRKDINSTAQ-NIMFYDMGSGSTVCTIVTYQTVKTKDAGI---QPQLQIRGVGFDR 268
Query: 523 TLGGLEMQIRLRDFLGKKFNEMKK--TTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFA 580
TLGGLEM++RLR+ L + FNE +K KDV ENPRA+AKL +EA RLK VLSAN +H A
Sbjct: 269 TLGGLEMELRLREHLARLFNEQRKGQRAKDVRENPRAMAKLLREANRLKTVLSANADHMA 328
Query: 581 QIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTR 640
QIEGL+D++DFK VTRAEFE L DLF+RV PV+QAL+S+ + +D I QVILVG TR
Sbjct: 329 QIEGLMDDVDFKAKVTRAEFEELCADLFERVPGPVQQALQSAEMKLDEIEQVILVGGATR 388
Query: 641 VPKVQEKITKVVGVE-LSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVE 699
VPKVQE + K VG E L KN+N DEAAA+GAVY+AA LS FKVK F+ +D V+YPI VE
Sbjct: 389 VPKVQEVLLKAVGKEELGKNINADEAAAMGAVYQAAALSKAFKVKPFVVRDAVIYPILVE 448
Query: 700 FERE--SESG--DTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQ 755
F RE E+G K KR+LF YPQ+K++TFN+Y DFNF+++Y ++ L PE
Sbjct: 449 FTREVEEETGVRSLKHNKRVLFSRMGPYPQRKVITFNRYSHDFNFHINYG-DLGFLGPED 507
Query: 756 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELV----VE 811
+ + G++ ++ + GV E+F K+ + ESKGIKAHF +DESG+LSL +E V VE
Sbjct: 508 LRVFGSQNLTTVKLKGVGESFKKYPDY--ESKGIKAHFNLDESGVLSLDRVESVFETLVE 565
Query: 812 KQEAAESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKN 860
ES L+KLGNT++SLF T + ++ + V E + E SK+
Sbjct: 566 DSPEEESTLTKLGNTISSLFGGGSTPDTKENGTDTVQEEEEGPAEGSKD 614
|
|
| UNIPROTKB|E2RB31 HYOU1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1449 (515.1 bits), Expect = 1.9e-179, Sum P(3) = 1.9e-179
Identities = 319/646 (49%), Positives = 426/646 (65%)
Query: 283 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRF 342
+AVMSVDLGSE MKVAIV PGVPMEI LNKES+RKTP V + ER FG+ A + +
Sbjct: 33 LAVMSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVTVTLKENERFFGDSAASMAIKN 92
Query: 343 PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAM 402
P + YF LLGK +P V L+ +RFP +++ D +R T+ F+ + + EE++ M
Sbjct: 93 PKATLRYFQHLLGKQEGNPHVALYGARFPEHELGFDPQRQTVHFQISPQLQFSPEEVLGM 152
Query: 403 LLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALN 462
+L+ +R A A Q I +AVI VP +FNQ ER+++L+A +AGLKVLQL+ND TA AL+
Sbjct: 153 VLNYSRSLAEDFAEQPIKDAVITVPAFFNQAERRAVLQAARMAGLKVLQLINDNTATALS 212
Query: 463 YGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 522
YG+F+RKD N T +VMFYDMG+ ST +IV+YQ VKTKE G PQ+ + GVG+DR
Sbjct: 213 YGVFRRKDIN-TTAQNVMFYDMGSGSTVCTIVTYQTVKTKEAGM---QPQLQIRGVGFDR 268
Query: 523 TLGGLEMQIRLRDFLGKKFNEMKK--TTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFA 580
TLGGLEM++RLR+ L + FNE +K KDV ENPRA+AKL +EA RLK VLSAN +H A
Sbjct: 269 TLGGLEMELRLREHLARLFNEQRKGQRAKDVRENPRAMAKLLREANRLKTVLSANADHMA 328
Query: 581 QIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTR 640
QIEGL+D++DFK VTRAEFE L DLF+RV PV+QAL+S+ + +D I QVILVG TR
Sbjct: 329 QIEGLMDDVDFKAKVTRAEFEELCADLFERVPGPVQQALQSAEMNLDEIEQVILVGGATR 388
Query: 641 VPKVQEKITKVVGVE-LSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVE 699
VPKVQE + K VG E L KN+N DEAAA+GAVY+AA LS FKVK F+ +D V+YPI VE
Sbjct: 389 VPKVQEVLLKAVGKEELGKNVNADEAAAMGAVYQAAALSKAFKVKPFVVRDAVIYPILVE 448
Query: 700 FERE--SESG--DTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQ 755
F RE E G K KR+LF YPQ+K++TFN+Y DFNF+++Y ++ L PE
Sbjct: 449 FTREVEEEPGVRSLKHNKRVLFSRMGPYPQRKVITFNRYNHDFNFHINYG-DLGFLGPED 507
Query: 756 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELV----VE 811
+ + G++ ++ + GV E+F K+ + ESKGIKAHF +DESG+LSL+ +E V VE
Sbjct: 508 LRVFGSQNLTTVKLKGVGESFKKYPDY--ESKGIKAHFNLDESGVLSLIKVESVFETLVE 565
Query: 812 KQEAAESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKNV-NSTXXXXXX 870
ES L+KLGNT++SLF T + ++ ++V E ++ E SK+
Sbjct: 566 DSPEEESTLTKLGNTISSLFGGGTTPDAKENGTDSVQEEEESPAEGSKDEPGEQAELKEE 625
Query: 871 XXXXVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEK 916
V++ +Q P + PK E A+E + +K EK
Sbjct: 626 AEAPVEDTSQPPPTE--PKEDAAPEEEKAAEKEKEEKSEAQKPSEK 669
|
|
| UNIPROTKB|F1SAI8 HYOU1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1439 (511.6 bits), Expect = 2.7e-178, Sum P(3) = 2.7e-178
Identities = 307/589 (52%), Positives = 408/589 (69%)
Query: 283 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRF 342
+AVMSVDLGSE MKVAIV PGVPMEI LNKES+RKTP V + ER FG+ A + +
Sbjct: 33 LAVMSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVTVTLKENERFFGDSAASMAIKN 92
Query: 343 PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAM 402
P + YF LLGK ++P V L+++RFP +++ D +R T+ F+ + + EE+++M
Sbjct: 93 PKATLRYFQHLLGKQENNPHVALYRARFPEHELGFDPQRQTVYFQISPQLQFSPEEVLSM 152
Query: 403 LLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALN 462
LL+ +R A A Q I +AVI VP +FNQ ER+++L+A +AGLKVLQL+ND TA AL+
Sbjct: 153 LLNYSRSLAEDFAEQPIKDAVITVPAFFNQAERRAVLQAARMAGLKVLQLINDNTATALS 212
Query: 463 YGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 522
YG+F+RKD N T ++MFYDMGA ST +IV+YQ VKTK+ G PQ+ + GVG+DR
Sbjct: 213 YGVFRRKDIN-TTAQNIMFYDMGAGSTVCTIVTYQTVKTKDSG---VQPQLQIRGVGFDR 268
Query: 523 TLGGLEMQIRLRDFLGKKFNEMKK--TTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFA 580
TL GLEM++RLR+ L + FNE +K KDV ENPRA+AKL +EA RLK VLSAN +H A
Sbjct: 269 TLXGLEMELRLREHLARLFNEQRKGQRAKDVRENPRAMAKLLREANRLKTVLSANADHMA 328
Query: 581 QIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTR 640
QIEGL+D++DFK VTRAEFE L DLF+RV PV+QAL+S+ + +D I QVILVG TR
Sbjct: 329 QIEGLMDDVDFKAKVTRAEFEDLCADLFERVPGPVQQALQSAEMKLDEIEQVILVGGATR 388
Query: 641 VPKVQEKITKVVGVE-LSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVE 699
VPKVQE + K VG E L KN+N DEAAA+GAVY+AA LS FKVK F+ +D V+YPI VE
Sbjct: 389 VPKVQEVLLKAVGKEELGKNINADEAAAMGAVYQAAALSKAFKVKPFVVRDAVIYPILVE 448
Query: 700 FERE--SESG--DTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQ 755
F RE E G K KR+LF YPQ+K++TFN+Y DFNF+++Y ++ L PE
Sbjct: 449 FTREVEEEPGVHSLKHNKRILFSRMGPYPQRKVITFNRYSHDFNFHINYG-DLGFLGPED 507
Query: 756 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELV----VE 811
+ + G++ ++ + GV E+F K+ + ESKGIKAHF +DESG+LSL +E V VE
Sbjct: 508 LRVFGSQNLTTVKLKGVGESFRKYPDY--ESKGIKAHFNLDESGVLSLDRVESVFETLVE 565
Query: 812 KQEAAESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKN 860
ES L+KLGNT++SLF T + ++ ++V E + E SK+
Sbjct: 566 DSPEEESTLTKLGNTISSLFGGGATPDAKENGTDSVQEEEEGPAEGSKD 614
|
|
| UNIPROTKB|E9PL22 HYOU1 "Hypoxia up-regulated protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1605 (570.0 bits), Expect = 4.6e-174, Sum P(2) = 4.6e-174
Identities = 362/801 (45%), Positives = 509/801 (63%)
Query: 283 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRF 342
+AVMSVDLGSE MKVAIV PGVPMEI LNKES+RKTP +V + ER FG+ A + +
Sbjct: 33 LAVMSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVIVTLKENERFFGDSAASMAIKN 92
Query: 343 PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAM 402
P + YF LLGK D+P V L+++RFP +++ D +R T+ F+ + + EE++ M
Sbjct: 93 PKATLRYFQHLLGKQADNPHVALYQARFPEHELTFDPQRQTVHFQISSQLQFSPEEVLGM 152
Query: 403 LLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALN 462
+L+ +R A A Q I +AVI VP +FNQ ER+++L+A +AGLKVLQL+ND TA AL+
Sbjct: 153 VLNYSRSLAEDFAEQPIKDAVITVPVFFNQAERRAVLQAARMAGLKVLQLINDNTATALS 212
Query: 463 YGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 522
YG+F+RKD N T ++MFYDMG+ ST +IV+YQ+VKTKE G PQ+ + GVG+DR
Sbjct: 213 YGVFRRKDIN-TTAQNIMFYDMGSGSTVCTIVTYQMVKTKEAGM---QPQLQIRGVGFDR 268
Query: 523 TLGGLEMQIRLRDFLGKKFNEMKK--TTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFA 580
TLGGLEM++RLR+ L FNE +K KDV ENPRA+AKL +EA RLK VLSAN +H A
Sbjct: 269 TLGGLEMELRLRERLAGLFNEQRKGQRAKDVRENPRAMAKLLREANRLKTVLSANADHMA 328
Query: 581 QIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTR 640
QIEGL+D++DFK VTR EFE L DLF+RV PV+QAL+S+ + +D I QVILVG TR
Sbjct: 329 QIEGLMDDVDFKAKVTRVEFEELCADLFERVPGPVQQALQSAEMSLDEIEQVILVGGATR 388
Query: 641 VPKVQEKITKVVGVE-LSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVE 699
VP+VQE + K VG E L KN+N DEAAA+GAVY+AA LS FKVK F+ +D V+YPI VE
Sbjct: 389 VPRVQEVLLKAVGKEELGKNINADEAAAMGAVYQAAALSKAFKVKPFVVRDAVVYPILVE 448
Query: 700 FERE--SESG--DTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQ 755
F RE E G K KR+LF YPQ+K++TFN+Y DFNF+++Y ++ L PE
Sbjct: 449 FTREVEEEPGIHSLKHNKRVLFSRMGPYPQRKVITFNRYSHDFNFHINYG-DLGFLGPED 507
Query: 756 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEK--Q 813
+ + G++ ++ + GV ++F K+ + ESKGIKAHF +DESG+LSL +E V E +
Sbjct: 508 LRVFGSQNLTTVKLKGVGDSFKKYPDY--ESKGIKAHFNLDESGVLSLDRVESVFETLVE 565
Query: 814 EAAE--SPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKNVNSTXXXXXXX 871
++AE S L+KLGNT++SLF T P +A + G T ++PS+ +
Sbjct: 566 DSAEEESTLTKLGNTISSLFGGGTT-----P--DAKENGTDTVQKPSEKAEA-------- 610
Query: 872 XXXVKNATQTPDADKKPKIVTVK---EPISASETRYGVSTLNEKQVEKSLSKLDSLNQIE 928
+ P+ +KK K + E I + L E ++ +S+ KL L +
Sbjct: 611 --GPEGVAPAPEGEKKQKPARKRRMVEEIGVELVVLDLPDLPEDKLAQSVQKLQDLTLRD 668
Query: 929 HAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAE 988
K +EKA NSLE+ +F+ + KL EY V+ + + I K+ + WLE++G A
Sbjct: 669 LEKQEREKAANSLEAFIFETQDKLYQPEYQEVSTEEQREEISGKLSAASTWLEDEGVGAT 728
Query: 989 ADVLENKLNEINSLVVPIWERHREHQERPEALKSLNNALNVSVTFYNSIKNLSLNTNETE 1048
+L+ KL E+ L ++ R E ++ PE L +L+N LN S F +K L E +
Sbjct: 729 TVMLKEKLAELRKLCQGLFFRVEERKKWPERLSALDNLLNHSSMF---LKGARL-IPEMD 784
Query: 1049 DLNLFSDIELKSLD-TLSMVW 1068
+ F+++E+ +L+ ++ W
Sbjct: 785 QI--FTEVEMTTLEKVINETW 803
|
|
| UNIPROTKB|F1NY05 HYOU1 "Hypoxia up-regulated protein 1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1519 (539.8 bits), Expect = 1.2e-169, Sum P(3) = 1.2e-169
Identities = 356/793 (44%), Positives = 493/793 (62%)
Query: 283 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRF 342
+AVMSVD+GSE MK+AIV PGVPMEI LNKES+RKTP VA + ER FG+ A + +
Sbjct: 24 LAVMSVDMGSESMKIAIVKPGVPMEIVLNKESRRKTPVAVALKENERLFGDSALGMSIKT 83
Query: 343 PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAM 402
P ++ YF DLLGK ID+P V L++SRFP +++V DE+R T++FK + Y EE++ M
Sbjct: 84 PKVAFRYFQDLLGKQIDNPQVALYQSRFPEHELVKDEKRQTVIFKLSQTLQYSPEEMLGM 143
Query: 403 LLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALN 462
+L+ +R A A Q I +AVI VP YFNQ ER+++L A +A LKVLQL+ND TAVALN
Sbjct: 144 VLNYSRGLAEEFAEQPIKDAVITVPAYFNQAERRAVLHAARMADLKVLQLINDNTAVALN 203
Query: 463 YGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 522
YG+F+RKD N T ++MFYDMGA ST +IV+YQ VKTK+ G T PQ+ + G+G+DR
Sbjct: 204 YGVFRRKDINATAQ-NIMFYDMGAGSTVCTIVTYQTVKTKDSG---TQPQLQIQGIGFDR 259
Query: 523 TLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQI 582
TLGGLEM++RLRD+L K FN+ + +KDV +NPRA+AKL KEA RLK VLSAN +H AQI
Sbjct: 260 TLGGLEMELRLRDYLAKLFND-QHPSKDVRKNPRAMAKLLKEANRLKTVLSANADHMAQI 318
Query: 583 EGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVP 642
EGL+D+IDFK V+R EFE L DLF RV PV+QAL S+ + +D I QVILVG TRVP
Sbjct: 319 EGLLDDIDFKAKVSRQEFEDLCSDLFQRVPGPVQQALSSAEMNLDGIDQVILVGGATRVP 378
Query: 643 KVQEKITKVVGVE-LSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVEFE 701
KVQE + K VG E L KN+N DEAAA+GAVY+AA LS FKVK F+ +D ++PIQVEF
Sbjct: 379 KVQEVLLKAVGKEELGKNINADEAAAMGAVYQAAALSKAFKVKPFMVRDAAMFPIQVEFT 438
Query: 702 RESESGD-TKIIK---RMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQIA 757
RE E D +K +K R+LF YPQ+K++TFN+Y DF F V+Y ++ LN + +
Sbjct: 439 REVEEDDKSKSLKHNKRILFQRMAPYPQRKVITFNRYTDDFEFYVNYG-DLSFLNQDDLR 497
Query: 758 MLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELV----VEKQ 813
+ G+ ++ + GV E+F KH++ ESKGIKAHF MDESG+LSL +E V VE +
Sbjct: 498 IFGSLNLTTVRLKGVGESFKKHSDY--ESKGIKAHFNMDESGVLSLDRVESVFETLVEDK 555
Query: 814 EAAESPLSKLGNTLTSLFSRS-KTDENEKPINEAVDEGNKTAEEPSK--NVNSTXXXXXX 870
ES L+KLGNT++SLF T E + + ++V E ++ E +K +
Sbjct: 556 LEEESTLTKLGNTISSLFGGGGHTPEAGENLTDSVQEEEESLAEAAKEEDAGEEQGEEKQ 615
Query: 871 XXXXVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKLDSLNQIEHA 930
A P ++ K E A + + T+ E+++ KS + E
Sbjct: 616 QSPHPDQAEAVPPKEESQKNEE-GEKSEARDPKEDKETVKEEELSKSSGAGTAAKAEEEK 674
Query: 931 KVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEIT-NWLEEDGWNAEA 989
K++ K + L+ + +L++ + + +E K+ + K+ ++T LE+ A
Sbjct: 675 KIKAPKK----QKLVHEITMELDVNDVPDLLE-DELKSSMKKLQDLTIRDLEKQEREKSA 729
Query: 990 DVLENKLNEI-NSLVVPIWERHREHQERPEALKSLNNALN-VSVTFYNSI-KNLSLNTNE 1046
+ LE+ + E + L + +ER E K L+ A N + Y + K L E
Sbjct: 730 NSLESFIFETQDKLYQEEYLFVSTEEEREEISKKLSEASNWMEEEGYAAATKELKDKLAE 789
Query: 1047 TEDL--NLFSDIE 1057
+ L NLF +E
Sbjct: 790 LKKLCRNLFFRVE 802
|
|
| UNIPROTKB|F1NJZ5 HYOU1 "Hypoxia up-regulated protein 1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1471 (522.9 bits), Expect = 1.4e-164, Sum P(3) = 1.4e-164
Identities = 344/771 (44%), Positives = 481/771 (62%)
Query: 283 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRF 342
+AVMSVD+GSE MK+AIV PGVPMEI LNKES+RKTP VA + ER FG+ A + +
Sbjct: 3 LAVMSVDMGSESMKIAIVKPGVPMEIVLNKESRRKTPVAVALKENERLFGDSALGMSIKT 62
Query: 343 PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAM 402
P ++ YF DLLGK ID+P V L++SRFP +++V DE+R T++FK + Y EE++ M
Sbjct: 63 PKVAFRYFQDLLGKQIDNPQVALYQSRFPEHELVKDEKRQTVIFKLSQTLQYSPEEMLGM 122
Query: 403 LLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALN 462
+L+ +R A A Q I +AVI VP YFNQ ER+++L A +A LKVLQL+ND TAVALN
Sbjct: 123 VLNYSRGLAEEFAEQPIKDAVITVPAYFNQAERRAVLHAARMADLKVLQLINDNTAVALN 182
Query: 463 YGIFKRKDF--NETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGY 520
YG+ + + + ++MFYDMGA ST +IV+YQ VKTK+ G T PQ+ + G+G+
Sbjct: 183 YGVGGKTSMPLHSFSFQNIMFYDMGAGSTVCTIVTYQTVKTKDSG---TQPQLQIQGIGF 239
Query: 521 DRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFA 580
DRTLGGLEM++RLRD+L K FN+ + +KDV +NPRA+AKL KEA RLK VLSAN +H A
Sbjct: 240 DRTLGGLEMELRLRDYLAKLFND-QHPSKDVRKNPRAMAKLLKEANRLKTVLSANADHMA 298
Query: 581 QIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTR 640
QIEGL+D+IDFK V+R EFE L DLF RV PV+QAL S+ + +D I QVILVG TR
Sbjct: 299 QIEGLLDDIDFKAKVSRQEFEDLCSDLFQRVPGPVQQALSSAEMNLDGIDQVILVGGATR 358
Query: 641 VPKVQEKITKVVGVE-LSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVE 699
VPKVQE + K VG E L KN+N DEAAA+GAVY+AA LS FKVK F+ +D ++PIQVE
Sbjct: 359 VPKVQEVLLKAVGKEELGKNINADEAAAMGAVYQAAALSKAFKVKPFMVRDAAMFPIQVE 418
Query: 700 FERESESGD-TKIIK---RMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQ 755
F RE E D +K +K R+LF YPQ+K++TFN+Y DF F V+Y ++ LN +
Sbjct: 419 FTREVEEDDKSKSLKHNKRILFQRMAPYPQRKVITFNRYTDDFEFYVNYG-DLSFLNQDD 477
Query: 756 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELV----VE 811
+ + G+ ++ + GV E+F KH++ ESKGIKAHF MDESG+LSL +E V VE
Sbjct: 478 LRIFGSLNLTTVRLKGVGESFKKHSDY--ESKGIKAHFNMDESGVLSLDRVESVFETLVE 535
Query: 812 KQEAAESPLSKLGNTLTSLFSRS-KTDENEKPINEAVDEGNKTAEEPSKNVNSTXXXXXX 870
+ ES L+KLGNT++SLF T E + + ++V E ++ E +K
Sbjct: 536 DKLEEESTLTKLGNTISSLFGGGGHTPEAGENLTDSVQEEEESLAEAAKEEQGVKQGQKS 595
Query: 871 XXXXV-----KNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKLDSLN 925
+ Q+P D+ + V KE +E + K+ +K K + L+
Sbjct: 596 SAEDAGEEQGEEKQQSPHPDQA-EAVPPKEESQKNEEGEKSEARDPKE-DKETVKEEELS 653
Query: 926 QIEHA----KVRKEKALNS--LESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEIT-N 978
+ A K +EK + + + L+ + +L++ + + +E K+ + K+ ++T
Sbjct: 654 KSSGAGTAAKAEEEKKIKAPKKQKLVHEITMELDVNDVPDLLE-DELKSSMKKLQDLTIR 712
Query: 979 WLEEDGWNAEADVLENKLNEI-NSLVVPIWERHREHQERPEALKSLNNALN 1028
LE+ A+ LE+ + E + L + +ER E K L+ A N
Sbjct: 713 DLEKQEREKSANSLESFIFETQDKLYQEEYLFVSTEEEREEISKKLSEASN 763
|
|
| ZFIN|ZDB-GENE-030131-5344 hyou1 "hypoxia up-regulated 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1570 (557.7 bits), Expect = 5.8e-163, Sum P(2) = 5.8e-163
Identities = 388/938 (41%), Positives = 541/938 (57%)
Query: 283 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRF 342
+AVMSVDLGSEWMKVAIV PGVPMEI LNKES+RKTP V + ER FG+ A + +
Sbjct: 25 VAVMSVDLGSEWMKVAIVKPGVPMEIVLNKESRRKTPVAVCLKENERLFGDGALGVAVKN 84
Query: 343 PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAM 402
P Y + +LGK+ D+P V ++ FP + + DE+RGT+ FK ++ Y EEL+ M
Sbjct: 85 PKVVYRFLQSILGKTADNPQVAEYQKHFPEHQLQKDEKRGTVYFKFSEEMQYTPEELLGM 144
Query: 403 LLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALN 462
+L+ +R A A Q I +AVI VP YFNQ ER+++L+A +AGLKVLQL+ND TAVALN
Sbjct: 145 ILNYSRTLAQDFAEQPIKDAVITVPAYFNQAERRAVLQAAHIAGLKVLQLINDNTAVALN 204
Query: 463 YGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 522
YG+F+RKD N T ++MFYDMG+ STT +IV+YQ VKTKE G T PQ+ + GVG+DR
Sbjct: 205 YGVFRRKDINSTAQ-NIMFYDMGSGSTTATIVTYQTVKTKESG---TQPQLQIRGVGFDR 260
Query: 523 TLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQI 582
TLGG EM++RLRD L K FNE KK+ KDV +N RA+AKL KEA RLK VLSAN EH AQI
Sbjct: 261 TLGGFEMELRLRDHLAKLFNEQKKSKKDVRDNLRAMAKLLKEAQRLKTVLSANAEHTAQI 320
Query: 583 EGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVP 642
EGL+D+IDFK VTR+EFEAL EDLFDRV PV+QAL ++ + MD I QVILVG TRVP
Sbjct: 321 EGLMDDIDFKAKVTRSEFEALCEDLFDRVPGPVKQALAAAEMSMDEIEQVILVGGATRVP 380
Query: 643 KVQEKITKVVGVE-LSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVEFE 701
KVQ+ + K VG E LSKN+N DEAAA+GAVY+AA LS FKVK F+ +D ++PIQVEF
Sbjct: 381 KVQDVLLKSVGKEELSKNINADEAAAMGAVYQAAALSKAFKVKPFLVRDAAVFPIQVEFS 440
Query: 702 RESESGD-TKIIK---RMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQIA 757
RE+E D K +K R+LF YPQ+K++TFN+Y+ DF F ++Y ++ L+ + +
Sbjct: 441 RETEEEDGVKSLKHNKRILFQRMAPYPQRKVITFNRYIDDFVFYINYG-DLSFLSEQDMK 499
Query: 758 MLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVE---KQE 814
+ G++ ++ +SGV +F KH++ AESKGIKAHF MDESG+L L +E V E +++
Sbjct: 500 VFGSQNLTTVKLSGVGSSFKKHSD--AESKGIKAHFNMDESGVLILDRVESVFETIVEEK 557
Query: 815 AAESPLSKLGNTLTSLFSRSKTDENE---KPIN---EAVDEGNKTAEEPSKNVNSTXXXX 868
ES L+KLGNT++SLF ++ + +P+ E E K ++P K +
Sbjct: 558 EEESTLTKLGNTISSLFGGGSSEPSANVTEPVTDEEEVTPEAGKEQDQPEKQEETVQEKP 617
Query: 869 XXXXXXVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKLDSLNQIE 928
+ K K E S + T +E++ KL ++I
Sbjct: 618 ETEEGKEAEPQAEEQKEDKEKAENQGETESEKTEKPEEKTTDEEKEADMKPKLQKKSKIS 677
Query: 929 HAKVRKEKALNS-LESLLFDAK-SKLELEEYSS--VAAPNESKTIVDK---IDEITNWLE 981
A + E +N L+ D + SK +L++ + + KT+ I E + L
Sbjct: 678 -ADIAVELEVNDVLDPSAEDMEGSKKKLQDLTDRDLEKQEREKTLNSLEAFIFETQDKLY 736
Query: 982 EDGWNAEADVLENKLNEINSL--VVPIWERHREHQERPEALKSLNNALNVSVTFYNSIKN 1039
+D + +A V E + +I+ V W ++ + LK + L K
Sbjct: 737 QDEY--QAVVTEEEKEQISGRLSVASSWMDEEGYRAGTKLLKEKLSELK------KLCKG 788
Query: 1040 LSLNTNETEDLNLFSDIELKSLDTL---SMVWFR----VCWGFFFLLFKQDKGLDTLINE 1092
+ E + + D L +LD++ S ++ + + + K L+ +INE
Sbjct: 789 MFFRVEERKK---WPD-RLAALDSMLNHSNIFLKSARLIPESDQIFTDVELKTLEKVINE 844
Query: 1093 TKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSKLWMASLXXXXXXX 1152
T WK ++ EQ +L + VL + I K+ L+REV YL NK+K
Sbjct: 845 TITWKNETVAEQEKLSPTVKPVLLSKDIEAKLSLLDREVNYLLNKAKFAKPKPKDKAKDK 904
Query: 1153 XXXXXXXXXXXXXXXTK--PSETEQSKPEEQPAGDQEP 1188
K P +TE + +PA +EP
Sbjct: 905 NSTSESSKANSTDDAEKVIPPKTEDGAEKVKPA--EEP 940
|
|
| UNIPROTKB|Q5ZLK7 HYOU1 "Hypoxia up-regulated protein 1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1476 (524.6 bits), Expect = 1.1e-161, Sum P(2) = 1.1e-161
Identities = 350/778 (44%), Positives = 479/778 (61%)
Query: 279 HSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQII 338
H+ +AVMSVD+GSE MK+AIV PGVPMEI LNKES+RKTP VA + ER FG+ A +
Sbjct: 20 HTEPLAVMSVDMGSESMKIAIVKPGVPMEIVLNKESRRKTPVAVALKENERLFGDSALGM 79
Query: 339 GTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEE 398
+ P ++ YF DLLGK ID+P V L++SRFP +++V DE+R T++FK + Y EE
Sbjct: 80 SIKTPKVAFRYFQDLLGKQIDNPQVALYQSRFPEHELVKDEKRQTVIFKLSQTLQYSPEE 139
Query: 399 LVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTA 458
++ M+L+ +R A A Q I +AVI VP YFNQ ER+++L A +A LKVLQL+ND TA
Sbjct: 140 MLGMVLNYSRGLAEEFAEQPIKDAVITVPAYFNQAERRAVLHAARMADLKVLQLINDNTA 199
Query: 459 VALNYGIFKRKDFNETNPVH------VMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQ 512
VALNYG+ K + P+H +MFYDMGA ST +IV+YQ VKTK+ G T PQ
Sbjct: 200 VALNYGVSGGKT---SMPLHSFSFQNIMFYDMGAGSTVCTIVTYQTVKTKDSG---TQPQ 253
Query: 513 VSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVL 572
+ + G+G+DRTLGGLEM++RLRD+L K FN+ + +KDV +NPRA+AKL KEA RLK VL
Sbjct: 254 LQIQGIGFDRTLGGLEMELRLRDYLAKLFND-QHPSKDVRKNPRAMAKLLKEANRLKTVL 312
Query: 573 SANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQV 632
SAN +H AQIEGL+D+IDFK V+R EFE L DLF RV PV+QAL S+ + +D I QV
Sbjct: 313 SANADHMAQIEGLLDDIDFKAKVSRQEFEDLCSDLFQRVPGPVQQALSSAEMNLDGIDQV 372
Query: 633 ILVGAGTRVPKVQEKITKVVGVE-LSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDI 691
ILVG TRVPKVQE + K VG E L KN+N DEAAA+GAVY+AA LS FKVK F+ +D
Sbjct: 373 ILVGGATRVPKVQEVLLKAVGKEELGKNINADEAAAMGAVYQAAALSKAFKVKPFMVRDA 432
Query: 692 VLYPIQVEFERESESGD-TKIIK---RMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASE 747
++PIQVEF RE E D +K +K R+LF YPQ+K++TFN+Y DF F V+Y +
Sbjct: 433 AMFPIQVEFTREVEEDDKSKSLKHNKRILFQRMAPYPQRKVITFNRYTDDFEFYVNYG-D 491
Query: 748 IEHLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIE 807
+ LN + + + G+ ++ + GV E+F KH++ ESKGIKAHF MDESG+LSL +E
Sbjct: 492 LSFLNQDDLRIFGSLNLTTVRLKGVGESFKKHSDY--ESKGIKAHFNMDESGVLSLDRVE 549
Query: 808 LV----VEKQEAAESPLSKLGNTLTSLFSRS-KTDENEKPINEAVDEGNKTAEEPSKNVN 862
V VE + ES L+KLGNT++SLF T E + + ++V E ++ E +K
Sbjct: 550 SVFETLVEDKLEEESTLTKLGNTISSLFGGGGHTPEAGENLTDSVQEEEESLAEAAKEEQ 609
Query: 863 STXXXXXXXXXXV-----KNATQTPDADKK----PKIVTVK-EPISASETRYGVSTLNEK 912
+ Q+P D+ PK + K E SE R E
Sbjct: 610 GVKQGQKSSAEDAGEEQGEEKQQSPHPDQAEAVPPKEESQKNEEGEKSEARDPKED-KET 668
Query: 913 QVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDK 972
E+ LSK A+ K+ + L+ + +L++ + + +E K+ + K
Sbjct: 669 VNEEELSKSSGAGTAAKAEEEKKIKAPKKQKLVHEITMELDVNDVPDLLE-DELKSSMKK 727
Query: 973 IDEIT-NWLEEDGWNAEADVLENKLNEI-NSLVVPIWERHREHQERPEALKSLNNALN 1028
+ ++T LE+ A+ LE+ + E + L + +ER E K L+ A N
Sbjct: 728 LQDLTIRDLEKQEREKSANSLESFIFETQDKLYQEEYLFVSTEEEREEISKKLSEASN 785
|
|
| UNIPROTKB|F1LN18 Hyou1 "Hypoxia up-regulated protein 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1469 (522.2 bits), Expect = 2.3e-159, Sum P(2) = 2.3e-159
Identities = 337/750 (44%), Positives = 473/750 (63%)
Query: 283 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRF 342
+AVMSVDLGSE MKVAIV PGVPMEI LNKES+RKTP V + ER G+ A + +
Sbjct: 33 LAVMSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVTVTLKENERFLGDSAAGMAIKN 92
Query: 343 PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAM 402
P + YF LLGK D+P V L++SRFP +++ D +R T+ F+ + + EE++ M
Sbjct: 93 PKATLRYFQHLLGKQADNPHVALYRSRFPEHELNVDPQRQTVRFQISPQLQFSPEEVLGM 152
Query: 403 LLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALN 462
+L+ +R A A Q I +AVI VP +FNQ ER+++L+A +AGLKVLQL+ND TA AL+
Sbjct: 153 VLNYSRSLAEDFAEQPIKDAVITVPAFFNQAERRAVLQAARMAGLKVLQLINDNTATALS 212
Query: 463 YGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 522
YG+F+RKD N T ++MFYDMG+ ST +IV+YQ VKTKE G T PQ+ + GVG+DR
Sbjct: 213 YGVFRRKDINSTAQ-NIMFYDMGSGSTVCTIVTYQTVKTKEAG---TQPQLQIRGVGFDR 268
Query: 523 TLGGLEMQIRLRDFLGKKFNEMKK--TTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFA 580
TLGGLEM++RLR+ L K FNE +K KDV ENPRA+AKL +EA RLK VLSAN +H A
Sbjct: 269 TLGGLEMELRLREHLAKLFNEQRKGQKAKDVRENPRAMAKLLREANRLKTVLSANADHMA 328
Query: 581 QIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTR 640
QIEGL+D++DFK VTR EFE L DLFDRV PV+QAL+S+ + +D I QVILVG TR
Sbjct: 329 QIEGLMDDVDFKAKVTRVEFEELCADLFDRVPGPVQQALQSAEMSLDQIEQVILVGGATR 388
Query: 641 VPKVQEKITKVVGVE-LSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVE 699
VPKVQE + K VG E L KN+N DEAAA+GAVY+AA LS FKVK F+ +D V+YPI VE
Sbjct: 389 VPKVQEVLLKAVGKEELGKNINADEAAAMGAVYQAAALSKAFKVKPFVVRDAVIYPILVE 448
Query: 700 FERE--SESG--DTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQ 755
F RE E G K KR+LF YPQ+K++TFN+Y DFNF+++Y ++ L PE
Sbjct: 449 FTREVEEEPGLRSLKHNKRVLFSRMGPYPQRKVITFNRYSHDFNFHINYG-DLGFLGPED 507
Query: 756 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELV----VE 811
+ + G++ ++ + GV E+F K+ + ESKGIKAHF +DESG+LSL +E V VE
Sbjct: 508 LRVFGSQNLTTVKLKGVGESFKKYPDY--ESKGIKAHFNLDESGVLSLDRVESVFETLVE 565
Query: 812 KQEAAESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKNVNSTXXXXXXX 871
ES L+KLGNT++SLF + + ++ +AV E ++ E SK+ +
Sbjct: 566 DSPEEESTLTKLGNTISSLFGGGTSSDAKENGTDAVQEEEESPAEGSKDEPAEQGELKEE 625
Query: 872 XXX-VKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKLDSLNQIEHA 930
+++ +Q P ++ PK +E + E G + +K EK + + +
Sbjct: 626 AEAPMEDTSQPPPSE--PKGDAAREGETPDEKESGDKSEAQKPNEKGQAGPEGVPPAPEE 683
Query: 931 KVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEIT-NWLEEDGWNAEA 989
+ +K+K + ++ + +L + + + +E V K++++T LE+ A
Sbjct: 684 E-KKQKPARK-QKMVEEIGVELAVLDLPDLPE-DELAHSVQKLEDLTLRDLEKQEREKAA 740
Query: 990 DVLENKLNEI-NSLVVPIWERHREHQERPE 1018
+ LE + E + L P ++ ++R E
Sbjct: 741 NSLEAFIFETQDKLYQPEYQEVSTEEQREE 770
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q7ZUW2 | HYOU1_DANRE | No assigned EC number | 0.4288 | 0.7285 | 0.9010 | yes | N/A |
| Q60432 | HYOU1_CRIGR | No assigned EC number | 0.4028 | 0.7252 | 0.8798 | yes | N/A |
| Q5ZLK7 | HYOU1_CHICK | No assigned EC number | 0.4170 | 0.7219 | 0.8732 | yes | N/A |
| Q9Y4L1 | HYOU1_HUMAN | No assigned EC number | 0.4058 | 0.7252 | 0.8798 | yes | N/A |
| Q9JKR6 | HYOU1_MOUSE | No assigned EC number | 0.4108 | 0.7252 | 0.8798 | yes | N/A |
| Q63617 | HYOU1_RAT | No assigned EC number | 0.4159 | 0.6988 | 0.8478 | yes | N/A |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1212 | |||
| cd10230 | 388 | cd10230, HYOU1-like_NBD, Nucleotide-binding domain | 1e-179 | |
| cd11732 | 377 | cd11732, HSP105-110_like_NBD, Nucleotide-binding d | 1e-112 | |
| cd10228 | 381 | cd10228, HSPA4_like_NDB, Nucleotide-binding domain | 3e-98 | |
| cd10230 | 388 | cd10230, HYOU1-like_NBD, Nucleotide-binding domain | 2e-91 | |
| pfam00012 | 598 | pfam00012, HSP70, Hsp70 protein | 2e-83 | |
| COG0443 | 579 | COG0443, DnaK, Molecular chaperone [Posttranslatio | 9e-74 | |
| cd10170 | 369 | cd10170, HSP70_NBD, Nucleotide-binding domain of t | 1e-69 | |
| cd10241 | 374 | cd10241, HSPA5-like_NBD, Nucleotide-binding domain | 2e-61 | |
| cd11739 | 383 | cd11739, HSPH1_NBD, Nucleotide-binding domain of H | 2e-59 | |
| cd10233 | 376 | cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding | 8e-59 | |
| PTZ00009 | 653 | PTZ00009, PTZ00009, heat shock 70 kDa protein; Pro | 6e-58 | |
| cd11732 | 377 | cd11732, HSP105-110_like_NBD, Nucleotide-binding d | 4e-52 | |
| cd11737 | 383 | cd11737, HSPA4_NBD, Nucleotide-binding domain of H | 2e-51 | |
| cd11738 | 383 | cd11738, HSPA4L_NBD, Nucleotide-binding domain of | 2e-51 | |
| cd10234 | 376 | cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding d | 2e-50 | |
| cd10228 | 381 | cd10228, HSPA4_like_NDB, Nucleotide-binding domain | 2e-48 | |
| cd11734 | 373 | cd11734, Ssq1_like_NBD, Nucleotide-binding domain | 2e-48 | |
| TIGR02350 | 595 | TIGR02350, prok_dnaK, chaperone protein DnaK | 1e-47 | |
| cd10238 | 375 | cd10238, HSPA14-like_NBD, Nucleotide-binding domai | 3e-45 | |
| cd10236 | 355 | cd10236, HscA_like_NBD, Nucleotide-binding domain | 2e-43 | |
| cd11733 | 377 | cd11733, HSPA9-like_NBD, Nucleotide-binding domain | 7e-43 | |
| TIGR01991 | 599 | TIGR01991, HscA, Fe-S protein assembly chaperone H | 3e-42 | |
| PLN03184 | 673 | PLN03184, PLN03184, chloroplast Hsp70; Provisional | 4e-42 | |
| PRK13410 | 668 | PRK13410, PRK13410, molecular chaperone DnaK; Prov | 4e-41 | |
| PRK00290 | 627 | PRK00290, dnaK, molecular chaperone DnaK; Provisio | 6e-41 | |
| CHL00094 | 621 | CHL00094, dnaK, heat shock protein 70 | 9e-40 | |
| cd10232 | 386 | cd10232, ScSsz1p_like_NBD, Nucleotide-binding doma | 2e-39 | |
| cd10235 | 339 | cd10235, HscC_like_NBD, Nucleotide-binding domain | 1e-38 | |
| PTZ00400 | 663 | PTZ00400, PTZ00400, DnaK-type molecular chaperone; | 1e-36 | |
| PTZ00186 | 657 | PTZ00186, PTZ00186, heat shock 70 kDa precursor pr | 2e-36 | |
| PRK13411 | 653 | PRK13411, PRK13411, molecular chaperone DnaK; Prov | 2e-35 | |
| PRK05183 | 616 | PRK05183, hscA, chaperone protein HscA; Provisiona | 4e-35 | |
| pfam00012 | 598 | pfam00012, HSP70, Hsp70 protein | 7e-35 | |
| cd10237 | 417 | cd10237, HSPA13-like_NBD, Nucleotide-binding domai | 7e-34 | |
| cd11739 | 383 | cd11739, HSPH1_NBD, Nucleotide-binding domain of H | 5e-31 | |
| cd10170 | 369 | cd10170, HSP70_NBD, Nucleotide-binding domain of t | 6e-30 | |
| COG0443 | 579 | COG0443, DnaK, Molecular chaperone [Posttranslatio | 8e-29 | |
| cd10241 | 374 | cd10241, HSPA5-like_NBD, Nucleotide-binding domain | 4e-25 | |
| cd10234 | 376 | cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding d | 5e-25 | |
| cd11734 | 373 | cd11734, Ssq1_like_NBD, Nucleotide-binding domain | 6e-25 | |
| PTZ00009 | 653 | PTZ00009, PTZ00009, heat shock 70 kDa protein; Pro | 1e-24 | |
| cd10233 | 376 | cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding | 4e-24 | |
| cd11738 | 383 | cd11738, HSPA4L_NBD, Nucleotide-binding domain of | 2e-23 | |
| TIGR02350 | 595 | TIGR02350, prok_dnaK, chaperone protein DnaK | 9e-23 | |
| cd11737 | 383 | cd11737, HSPA4_NBD, Nucleotide-binding domain of H | 2e-22 | |
| PRK13410 | 668 | PRK13410, PRK13410, molecular chaperone DnaK; Prov | 2e-21 | |
| cd11733 | 377 | cd11733, HSPA9-like_NBD, Nucleotide-binding domain | 6e-21 | |
| cd10236 | 355 | cd10236, HscA_like_NBD, Nucleotide-binding domain | 4e-20 | |
| TIGR01991 | 599 | TIGR01991, HscA, Fe-S protein assembly chaperone H | 2e-19 | |
| PTZ00400 | 663 | PTZ00400, PTZ00400, DnaK-type molecular chaperone; | 2e-19 | |
| cd10237 | 417 | cd10237, HSPA13-like_NBD, Nucleotide-binding domai | 2e-19 | |
| PLN03184 | 673 | PLN03184, PLN03184, chloroplast Hsp70; Provisional | 5e-19 | |
| PRK00290 | 627 | PRK00290, dnaK, molecular chaperone DnaK; Provisio | 8e-19 | |
| PRK01433 | 595 | PRK01433, hscA, chaperone protein HscA; Provisiona | 1e-18 | |
| cd10232 | 386 | cd10232, ScSsz1p_like_NBD, Nucleotide-binding doma | 3e-18 | |
| CHL00094 | 621 | CHL00094, dnaK, heat shock protein 70 | 4e-18 | |
| PRK13411 | 653 | PRK13411, PRK13411, molecular chaperone DnaK; Prov | 1e-17 | |
| PTZ00186 | 657 | PTZ00186, PTZ00186, heat shock 70 kDa precursor pr | 2e-17 | |
| cd10238 | 375 | cd10238, HSPA14-like_NBD, Nucleotide-binding domai | 5e-17 | |
| cd10235 | 339 | cd10235, HscC_like_NBD, Nucleotide-binding domain | 1e-15 | |
| PRK05183 | 616 | PRK05183, hscA, chaperone protein HscA; Provisiona | 6e-15 | |
| PRK01433 | 595 | PRK01433, hscA, chaperone protein HscA; Provisiona | 4e-08 | |
| cd10231 | 415 | cd10231, YegD_like, Escherichia coli YegD, a putat | 3e-05 | |
| pfam00012 | 598 | pfam00012, HSP70, Hsp70 protein | 6e-05 |
| >gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1 and similar proteins | Back alignment and domain information |
|---|
Score = 532 bits (1374), Expect = e-179
Identities = 211/392 (53%), Positives = 269/392 (68%), Gaps = 6/392 (1%)
Query: 286 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSN 345
+ +DLGSEW+KVA+V PGVP EI LN+ESKRKTP+ VAF GER FG DA + RFP
Sbjct: 1 LGIDLGSEWIKVALVKPGVPFEIVLNEESKRKTPSAVAFKGGERLFGSDASSLAARFPQQ 60
Query: 346 SYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLH 405
Y + DLLGK D P V L++SR P +V DE RGT+ FK +D E Y VEELVAM+L+
Sbjct: 61 VYLHLKDLLGKPADDPSVSLYQSRHPLPYLVVDESRGTVAFKISDGEEYSVEELVAMILN 120
Query: 406 KAREYASVSAGQ-VINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYG 464
A++ A A + + + VI VP YF Q +RQ++L A ELAGL VL L+ND TA ALNY
Sbjct: 121 YAKKLAEEHAKEAPVKDVVITVPPYFTQAQRQALLDAAELAGLNVLALVNDGTAAALNYA 180
Query: 465 IFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTL 524
+ +R F P +V+FYDMGA STT ++V + V+ KE+ +T PQ+ VLGVG+DRTL
Sbjct: 181 LDRR--FENNKPQYVLFYDMGAGSTTATVVEFSPVEEKEKS--KTVPQIEVLGVGWDRTL 236
Query: 525 GGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEG 584
GG E +RL D L K+F E K DV NPRA+AKL KEA R K VLSAN+E IE
Sbjct: 237 GGREFDLRLADHLAKEFEEKHKAKVDVRTNPRAMAKLLKEANRAKEVLSANSEAPVSIES 296
Query: 585 LIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKV 644
L D+IDFK +TRAEFE L DLF+R P+++AL+S+ + + I V L+G TRVPKV
Sbjct: 297 LYDDIDFKTKITRAEFEELCADLFERAVAPIKKALESAGLTLKDIDSVELIGGATRVPKV 356
Query: 645 QEKITKVVG-VELSKNLNTDEAAALGAVYKAA 675
QE++++ VG +L K+LN DEAAA+GA Y AA
Sbjct: 357 QEELSEAVGKKKLGKHLNADEAAAMGAAYYAA 388
|
This subgroup includes human HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian HYOU1 functions as a nucleotide exchange factor (NEF) for HSPA5 (alos known as BiP, Grp78 or HspA5) and may also function as a HSPA5-independent chaperone. S. cerevisiae Lhs1p, does not have a detectable endogenous ATPase activity like canonical HSP70s, but functions as a NEF for Kar2p; it's interaction with Kar2p is stimulated by nucleotide-binding. In addition, Lhs1p has a nucleotide-independent holdase activity that prevents heat-induced aggregation of proteins in vitro. This subgroup belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as NEFs, to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 388 |
| >gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4, HYOU1, and similar proteins | Back alignment and domain information |
|---|
Score = 354 bits (910), Expect = e-112
Identities = 109/392 (27%), Positives = 188/392 (47%), Gaps = 17/392 (4%)
Query: 286 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSN 345
+DLG+ +A+ ++I +N+ S R TP++V F R GE + T N
Sbjct: 1 FGLDLGNNNSVLAVARN-RGIDIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTSNIKN 59
Query: 346 SYGYFLDLLGKSIDSPVVQLF-KSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLL 404
+ ++G P + K + D++ G V + ++ +L AM +
Sbjct: 60 TVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFI 119
Query: 405 HKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYG 464
K ++ I + I VP ++ + +R ++ A +AGL ++++ND TA ++YG
Sbjct: 120 DKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYG 179
Query: 465 IFKRKD-FNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 523
IFK E P V F D+G S T SIV+++ Q+ VLG D+
Sbjct: 180 IFKTDLPEGEEKPRIVAFVDIGHSSYTCSIVAFKK------------GQLKVLGTACDKH 227
Query: 524 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIE 583
GG + + + + +F K D+ ENP+A ++ A +LK VLSAN +E
Sbjct: 228 FGGRDFDLAITEHFADEFKTKYKI--DIRENPKAYNRILTAAEKLKKVLSANTNAPFSVE 285
Query: 584 GLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPK 643
+++++D ++R E E L + L +RV PV +AL + + + + V ++G TR+P
Sbjct: 286 SVMNDVDVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPT 345
Query: 644 VQEKITKVVGVELSKNLNTDEAAALGAVYKAA 675
+++ I++ G LS LN DEA A GA + A
Sbjct: 346 LKQSISEAFGKPLSTTLNQDEAIAKGAAFICA 377
|
This subfamily include the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p, Sse2p, and Lhs1p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is also regulated by J-domain proteins. Length = 377 |
| >gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4 and similar proteins | Back alignment and domain information |
|---|
Score = 317 bits (816), Expect = 3e-98
Identities = 143/398 (35%), Positives = 211/398 (53%), Gaps = 20/398 (5%)
Query: 284 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFP 343
+V+ +D G+ VA+ G +++ N+ S R+TP+LV+F + +R GE A+
Sbjct: 1 SVVGIDFGNLNSVVAVARKGG-IDVVANEYSNRETPSLVSFGEKQRLIGEAAKNQAISNF 59
Query: 344 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFK-TNDNE--LYHVEELV 400
N+ F L+G+ D P VQ P+ +V + G + K E ++ E+++
Sbjct: 60 KNTVRNFKRLIGRKFDDPEVQKELKFLPF-KVVELPD-GKVGIKVNYLGEEKVFSPEQVL 117
Query: 401 AMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVA 460
AMLL K +E A + + + VI VP YF +R+++L A ++AGL L+LMN+ TA A
Sbjct: 118 AMLLTKLKEIAEKALKGKVTDCVISVPSYFTDAQRRALLDAAQIAGLNCLRLMNETTATA 177
Query: 461 LNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGY 520
L YGI+K E P +V F D+G ST VSIV++ K ++ VL +
Sbjct: 178 LAYGIYKTDLPEEEKPRNVAFVDIGHSSTQVSIVAF----NKG--------KLKVLSTAF 225
Query: 521 DRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFA 580
DR LGG + L + K+F +K DV NP+A +L +LK VLSAN E
Sbjct: 226 DRNLGGRDFDEALFEHFAKEFK--EKYKIDVLSNPKARLRLLAACEKLKKVLSANTEAPL 283
Query: 581 QIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTR 640
IE L+++ D + R EFE L L +RV P+E+AL + + + I V +VG TR
Sbjct: 284 NIECLMEDKDVSGKIKREEFEELCAPLLERVEEPLEKALAEAGLTKEDIHSVEIVGGSTR 343
Query: 641 VPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 678
+P V+E I KV G ELS LN DEA A G + A LS
Sbjct: 344 IPAVKELIAKVFGKELSTTLNADEAVARGCALQCAMLS 381
|
This subgroup includes the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), Saccharomyces cerevisiae Sse1p and Sse2p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 381 |
| >gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1 and similar proteins | Back alignment and domain information |
|---|
Score = 299 bits (768), Expect = 2e-91
Identities = 117/221 (52%), Positives = 150/221 (67%), Gaps = 3/221 (1%)
Query: 39 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSN 98
+ +DLGSEW+KVA+V PGVP EI LN+ESKRKTP+ VAF GER FG DA + RFP
Sbjct: 1 LGIDLGSEWIKVALVKPGVPFEIVLNEESKRKTPSAVAFKGGERLFGSDASSLAARFPQQ 60
Query: 99 SYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLH 158
Y + DLLGK D P V L++SR P +V DE RGT+ FK +D E Y VEELVAM+L+
Sbjct: 61 VYLHLKDLLGKPADDPSVSLYQSRHPLPYLVVDESRGTVAFKISDGEEYSVEELVAMILN 120
Query: 159 KAREYASVSAGQ-VINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYG 217
A++ A A + + + VI VP YF Q +RQ++L A ELAGL VL L+ND TA ALNY
Sbjct: 121 YAKKLAEEHAKEAPVKDVVITVPPYFTQAQRQALLDAAELAGLNVLALVNDGTAAALNYA 180
Query: 218 IFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERG 258
+ +R F P +V+FYDMGA STT ++V + V+ KE+
Sbjct: 181 LDRR--FENNKPQYVLFYDMGAGSTTATVVEFSPVEEKEKS 219
|
This subgroup includes human HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian HYOU1 functions as a nucleotide exchange factor (NEF) for HSPA5 (alos known as BiP, Grp78 or HspA5) and may also function as a HSPA5-independent chaperone. S. cerevisiae Lhs1p, does not have a detectable endogenous ATPase activity like canonical HSP70s, but functions as a NEF for Kar2p; it's interaction with Kar2p is stimulated by nucleotide-binding. In addition, Lhs1p has a nucleotide-independent holdase activity that prevents heat-induced aggregation of proteins in vitro. This subgroup belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as NEFs, to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 388 |
| >gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein | Back alignment and domain information |
|---|
Score = 284 bits (728), Expect = 2e-83
Identities = 193/655 (29%), Positives = 291/655 (44%), Gaps = 79/655 (12%)
Query: 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 344
V+ +DLG+ VA++ G P E+ N E R TP++VAF ER G+ A+ P
Sbjct: 1 VIGIDLGTTNSCVAVMEGGGP-EVIANDEGNRTTPSVVAFTPKERLVGQAAKRQAVTNPK 59
Query: 345 NSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLL 404
N+ L+G+ PVVQ PY +V V E + E++ AM+L
Sbjct: 60 NTVFSVKRLIGRKFSDPVVQRDIKHVPY-KVVKLPNGDAGVEVRYLGETFTPEQISAMVL 118
Query: 405 HKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYG 464
K +E A G+ + +AVI VP YFN +RQ+ AG +AGL VL+++N+ TA AL YG
Sbjct: 119 QKLKETAEAYLGEPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVLRIINEPTAAALAYG 178
Query: 465 IFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTL 524
+ K KD V+ +D+G + VSI+ G E VL D L
Sbjct: 179 LDK-KDKERN----VLVFDLGGGTFDVSILEI------GDGVFE------VLATNGDTHL 221
Query: 525 GGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANN-EHFAQIE 583
GG + RL D ++F KK D+ ++PRA+ +L + A + K LS+N E
Sbjct: 222 GGEDFDNRLVDHFVEEFK--KKYGIDLSKDPRALQRLREAAEKAKIELSSNQTEINLPFI 279
Query: 584 GLIDE-IDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVP 642
+ + D +TRA+FE L DLF+R PVE+ALK + + I +V+LVG TR+P
Sbjct: 280 TAMADGKDVSGTLTRAKFEELCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIP 339
Query: 643 KVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVEFER 702
VQE + + G E SK +N DEA A+GA +A LS F VK + D+ + +E
Sbjct: 340 AVQELVKEFFGKEPSKGVNPDEAVAIGAAVQAGVLSGTFDVKDVLLLDVTPLSLGIET-- 397
Query: 703 ESESGD--TKIIKRMLFGPSNTYPQKKILTFNKYV---GDFNFNVSYASEIEHLNPEQIA 757
G TK+I R T P KK F+ V E E
Sbjct: 398 ---LGGVMTKLIPRN-----TTIPTKKSQIFSTAADNQTAVEIQVYQG-EREMAPD---- 444
Query: 758 MLGTKQISKFDVSGVSEAFGKHNEENAESKG---IKAHFAMDESGILSLVNIELVVEKQE 814
K + F++ G+ A +G I+ F +D +GIL++ + K++
Sbjct: 445 ---NKLLGSFELDGIPPA----------PRGVPQIEVTFDIDANGILTVSAKDKGTGKEQ 491
Query: 815 AAESPLSKLGNTLTSLFSRSKTDENEKPINEA--VDEGNKTAEEPSKNVNSTESQQQSAE 872
S L+ DE E+ + +A +K +E + N E S E
Sbjct: 492 KITITASS---GLSD-------DEIERMVKDAEEYAAEDKKRKERIEAKNEAEEYVYSLE 541
Query: 873 ESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKLDSLNQI 927
+S+K K K+ E + L + E+ +K + L ++
Sbjct: 542 KSLKEEGDKLPEADKKKVEEAIEWLKEE--------LEGEDKEEIEAKTEELQKV 588
|
Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region. Length = 598 |
| >gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 256 bits (656), Expect = 9e-74
Identities = 170/607 (28%), Positives = 271/607 (44%), Gaps = 85/607 (14%)
Query: 288 VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFPSNS 346
+DLG+ VA++ G ++ N E +R TP++VAF K GE G+ A+ P N+
Sbjct: 10 IDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENT 69
Query: 347 YGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHK 406
+G+ + + + D + Y EE+ AM+L K
Sbjct: 70 IFSIKRKIGRGSNGLKISV----------------------EVDGKKYTPEEISAMILTK 107
Query: 407 AREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIF 466
+E A G+ + +AVI VP YFN +RQ+ A +AGL VL+L+N+ TA AL YG+
Sbjct: 108 LKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAYGLD 167
Query: 467 KRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGG 526
K K+ V+ YD+G + VS++ G E VL G D LGG
Sbjct: 168 KGKE------KTVLVYDLGGGTFDVSLLEI------GDGVFE------VLATGGDNHLGG 209
Query: 527 LEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLI 586
+ L D+L +F K D+ + A+ +L + A + K LS+ + + +
Sbjct: 210 DDFDNALIDYLVMEFK--GKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIG 267
Query: 587 DEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQE 646
+ID +TRA+FE L DL +R PVEQALK + + I VILVG TR+P VQE
Sbjct: 268 GDIDLLKELTRAKFEELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQE 327
Query: 647 KITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVEFERESES 706
+ + G E K++N DEA ALGA +AA LS + D++ + +E
Sbjct: 328 LVKEFFGKEPEKSINPDEAVALGAAIQAAVLSGEVPDVLLL--DVIPLSLGIETLGGVR- 384
Query: 707 GDTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQIAMLGTKQISK 766
T II+R + T P KK F+ + A I E+ K + +
Sbjct: 385 --TPIIER-----NTTIPVKKSQEFSTAA-----DGQTAVAIHVFQGEREMAADNKSLGR 432
Query: 767 FDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNT 826
F++ G+ A + I+ F +D +GIL++ +L K+++ T
Sbjct: 433 FELDGIPPA------PRGVPQ-IEVTFDIDANGILNVTAKDLGTGKEQS---------IT 476
Query: 827 LTSLFSRSKTDENEKPINEAVDEGNKTAE------EPSKNVNSTESQQQSAEESVKNATQ 880
+ + S ++ I V++ A E + N ES S E+++K +
Sbjct: 477 IKASSGLS-----DEEIERMVEDAEANAALDKKFRELVEARNEAESLIYSLEKALKEIVK 531
Query: 881 TPDADKK 887
+ +K+
Sbjct: 532 VSEEEKE 538
|
Length = 579 |
| >gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family | Back alignment and domain information |
|---|
Score = 237 bits (608), Expect = 1e-69
Identities = 132/399 (33%), Positives = 198/399 (49%), Gaps = 34/399 (8%)
Query: 281 YGIAVMSVDLG---SEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQ 336
GI DLG S VA V G EI N E R TP++V F GE GE A+
Sbjct: 1 IGI-----DLGTTNSA---VAYVDNGGKPEIIPNGEGSRTTPSVVYFDGDGEVLVGEAAK 52
Query: 337 IIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHV 396
P N+ G F L+G+ D P+VQ K V + Y
Sbjct: 53 RQALDNPENTVGDFKRLIGRKFDDPLVQSAKKVIGVDRGAPIIP----VPVELGGKKYSP 108
Query: 397 EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDY 456
EE+ A++L K +E A G+ + EAVI VP YFN +R++ +A E+AGL V++L+N+
Sbjct: 109 EEVSALILKKLKEDAEAYLGEPVTEAVITVPAYFNDAQREATKEAAEIAGLNVVRLINEP 168
Query: 457 TAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVL 516
TA AL YG+ K+ + T ++ +D+G + VS+V + VL
Sbjct: 169 TAAALAYGLDKKDEKGRT----ILVFDLGGGTFDVSLVEVE------------GGVFEVL 212
Query: 517 GVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANN 576
G D LGG + L D+L +KF +K D+ +PRA+ +L + A + K LS++
Sbjct: 213 ATGGDNHLGGDDFDNALADYLAEKF--KEKGGIDLRLDPRALRRLKEAAEKAKIALSSSE 270
Query: 577 EHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVG 636
E + GL D ++ +TR EFE L L +R VE+ L + + + I V+LVG
Sbjct: 271 EATITLPGLGSGGDLEVELTREEFEELIRPLLERTIDLVERVLADAGLKPEDIDAVLLVG 330
Query: 637 AGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAA 675
+R+P V+E + ++ G + ++++ DEA ALGA AA
Sbjct: 331 GSSRIPLVRELLEELFGKKPLRSIDPDEAVALGAAIYAA 369
|
HSP70 (70-kDa heat shock protein) family chaperones assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some HSP70 family members are not chaperones but instead, function as NEFs to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle, some may function as both chaperones and NEFs. Length = 369 |
| >gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5 and similar proteins | Back alignment and domain information |
|---|
Score = 214 bits (547), Expect = 2e-61
Identities = 133/393 (33%), Positives = 207/393 (52%), Gaps = 23/393 (5%)
Query: 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 344
V+ +DLG+ + V + G +EI N + R TP+ VAF GER G+ A+ T P
Sbjct: 3 VIGIDLGTTYSCVGVFKNG-RVEIIANDQGNRITPSYVAFTDGERLIGDAAKNQATSNPE 61
Query: 345 NSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTND-NELYHVEELVAML 403
N+ L+G+ D VQ PY +V + + I + + EE+ AM+
Sbjct: 62 NTIFDVKRLIGRKFDDKEVQKDIKLLPY-KVVNKDGKPYIEVDVKGEKKTFSPEEISAMV 120
Query: 404 LHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNY 463
L K +E A G+ + AV+ VP YFN +RQ+ AG +AGL V++++N+ TA A+ Y
Sbjct: 121 LTKMKEIAEAYLGKKVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAY 180
Query: 464 GIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 523
G+ K+ E N ++ +D+G + VS++ T + G E VL D
Sbjct: 181 GLDKKGG--EKN---ILVFDLGGGTFDVSLL------TIDNGVFE------VLATNGDTH 223
Query: 524 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIE 583
LGG + R+ + K F KK KD+ ++ RA+ KL +E + K LS+ ++ +IE
Sbjct: 224 LGGEDFDQRVMEHFIKLFK--KKHGKDISKDKRALQKLRREVEKAKRALSSQHQTRIEIE 281
Query: 584 GLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPK 643
L D DF +TRA+FE LN DLF + PV++ L+ + + I +++LVG TR+PK
Sbjct: 282 SLFDGEDFSETLTRAKFEELNMDLFKKTLKPVKKVLEDADLKKSDIDEIVLVGGSTRIPK 341
Query: 644 VQEKITKVV-GVELSKNLNTDEAAALGAVYKAA 675
VQ+ + + G E S+ +N DEA A GA +A
Sbjct: 342 VQQLLKEFFNGKEPSRGINPDEAVAYGAAVQAG 374
|
This subfamily includes human HSPA5 (also known as 70-kDa heat shock protein 5, glucose-regulated protein 78/GRP78, and immunoglobulin heavy chain-binding protein/BIP, MIF2; the gene encoding HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p (also known as Grp78p), and related proteins. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. HSPA5 and Kar2p are chaperones of the endoplasmic reticulum (ER). Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Multiple ER DNAJ domain proteins have been identified and may exist in distinct complexes with HSPA5 in various locations in the ER, for example DNAJC3-p58IPK in the lumen. HSPA5-NEFs include SIL1 and an atypical HSP70 family protein HYOU1/ORP150. The ATPase activity of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p. Length = 374 |
| >gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1 | Back alignment and domain information |
|---|
Score = 209 bits (532), Expect = 2e-59
Identities = 129/399 (32%), Positives = 205/399 (51%), Gaps = 20/399 (5%)
Query: 284 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFP 343
+V+ D+G + +A+ G +E N+ S R TP++++F RT G A+
Sbjct: 1 SVVGFDVGFQSCYIAVARAG-GIETVANEFSDRCTPSVISFGSKNRTIGVAAKNQQITHA 59
Query: 344 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVA--DEERGTIVFKTNDNELYHVEELVA 401
+N+ F G++ + P VQ K Y D+V + G V + L+ VE++ A
Sbjct: 60 NNTVSNFKRFHGRAFNDPFVQKEKENLSY-DLVPLKNGGVGVKVMYMGEEHLFSVEQITA 118
Query: 402 MLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVAL 461
MLL K +E A + + + + VI VP +F ER+S+L A ++ GL L+LMND TAVAL
Sbjct: 119 MLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNCLRLMNDMTAVAL 178
Query: 462 NYGIFKRK-DFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGY 520
NYGI+K+ + P V+F DMG + VS ++ K K VLG +
Sbjct: 179 NYGIYKQDLPSLDEKPRIVVFVDMGHSAFQVSACAFNKGKLK------------VLGTAF 226
Query: 521 DRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFA 580
D LGG +L + +F K D RA+ +L++E +LK ++S+N+
Sbjct: 227 DPFLGGKNFDEKLVEHFCAEFK--TKYKLDAKSKIRALLRLYQECEKLKKLMSSNSTDLP 284
Query: 581 -QIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGT 639
IE +++ D + R++FE L DL R+ P+ L+ + + ++ +S V +VG T
Sbjct: 285 LNIECFMNDKDVSGKMNRSQFEELCADLLQRIEVPLYSLLEQTHLKVEDVSAVEIVGGAT 344
Query: 640 RVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 678
R+P V+E+I K G ++S LN DEA A G + A LS
Sbjct: 345 RIPAVKERIAKFFGKDVSTTLNADEAVARGCALQCAILS 383
|
Human HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3) suppresses the aggregation of denatured proteins caused by heat shock in vitro, and may substitute for HSP70 family proteins to suppress the aggregation of denatured proteins in cells under severe stress. It reduces the protein aggregation and cytotoxicity associated with Polyglutamine (PolyQ) diseases, including Huntington's disease, which are a group of inherited neurodegenerative disorders sharing the characteristic feature of having insoluble protein aggregates in neurons. The expression of HSPH1 is elevated in various malignant tumors, including malignant melanoma, and there is a direct correlation between HSPH1 expression and B-cell non-Hodgkin lymphomas (B-NHLs) aggressiveness and proliferation. HSPH1 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar proteins | Back alignment and domain information |
|---|
Score = 207 bits (528), Expect = 8e-59
Identities = 132/392 (33%), Positives = 204/392 (52%), Gaps = 20/392 (5%)
Query: 288 VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSY 347
+DLG+ + V + G +EI N + R TP+ VAF ER G+ A+ P+N+
Sbjct: 4 IDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTV 62
Query: 348 GYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKA 407
L+G+ PVVQ +P+ + + IV + + ++ EE+ +M+L K
Sbjct: 63 FDAKRLIGRKFSDPVVQSDMKHWPFKVVNGGGKPPIIVEYKGETKTFYPEEISSMVLTKM 122
Query: 408 REYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFK 467
+E A G+ + AVI VP YFN +RQ+ AG +AGL VL+++N+ TA A+ YG+ K
Sbjct: 123 KEIAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDK 182
Query: 468 RKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGL 527
+ +V+ +D+G + VS++ T E G E V D LGG
Sbjct: 183 KGG----GERNVLIFDLGGGTFDVSLL------TIEDGIFE------VKATAGDTHLGGE 226
Query: 528 EMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLID 587
+ RL + ++F +K KD+ N RA+ +L R K LS++ + +I+ L +
Sbjct: 227 DFDNRLVNHFVQEFK--RKHKKDISGNKRALRRLRTACERAKRTLSSSTQASIEIDSLFE 284
Query: 588 EIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEK 647
IDF +TRA FE L DLF PVE+ L+ + + I ++LVG TR+PKVQ+
Sbjct: 285 GIDFYTSITRARFEELCADLFRGTLEPVEKVLRDAKLDKSQIHDIVLVGGSTRIPKVQKL 344
Query: 648 ITKVV-GVELSKNLNTDEAAALGAVYKAADLS 678
+ G EL+K++N DEA A GA +AA LS
Sbjct: 345 LQDFFNGKELNKSINPDEAVAYGAAVQAAILS 376
|
This subfamily includes human HSPA1A (70-kDa heat shock protein 1A, also known as HSP72; HSPA1; HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat shock protein 1B, also known as HSPA1A; HSP70-2; HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like, also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The genes for these three HSPA1 proteins map in close proximity on the major histocompatibility complex (MHC) class III region on chromosome 6, 6p21.3. This subfamily also includes human HSPA8 (heat shock 70kDa protein 8, also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73; NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human HSPA2 (70-kDa heat shock protein 2, also known as HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human HSPA6 (also known as heat shock 70kDa protein 6 (HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3), human HSPA7 (heat shock 70kDa protein 7 , also known as HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces cerevisiae Stress-Seventy subfamily B/Ssb1p. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Associations of polymorphisms within the MHC-III HSP70 gene locus with longevity, systemic lupus erythematosus, Meniere's disease, noise-induced hearing loss, high-altitude pulmonary edema, and coronary heart disease, have been found. HSPA2 is involved in cancer cell survival, is required for maturation of male gametophytes, and is linked to male infertility. The induction of HSPA6 is a biomarker of cellular stress. HSPA8 participates in the folding and trafficking of client proteins to different subcellular compartments, and in the signal transduction and apoptosis process; it has been shown to protect cardiomyocytes against oxidative stress partly through an interaction with alpha-enolase. S. cerevisiae Ssb1p, is part of the ribosome-associated complex (RAC), it acts as a chaperone for nascent polypeptides, and is important for translation fidelity; Ssb1p is also a [PSI+] prion-curing factor. Length = 376 |
| >gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Score = 212 bits (541), Expect = 6e-58
Identities = 198/682 (29%), Positives = 325/682 (47%), Gaps = 81/682 (11%)
Query: 280 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 339
+ G A+ +DLG+ + V V +EI N + R TP+ VAF ER G+ A+
Sbjct: 2 TKGPAI-GIDLGTTYSCVG-VWKNENVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 340 TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTI-VFKTNDNELYHVEE 398
R P N+ L+G+ D VVQ +P+ +++ I V + + +H EE
Sbjct: 60 ARNPENTVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEE 119
Query: 399 LVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTA 458
+ +M+L K +E A G+ + +AV+ VP YFN +RQ+ AG +AGL VL+++N+ TA
Sbjct: 120 ISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTA 179
Query: 459 VALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGV 518
A+ YG+ K K E N V+ +D+G + VS++ T E G E V
Sbjct: 180 AAIAYGLDK-KGDGEKN---VLIFDLGGGTFDVSLL------TIEDGIFE------VKAT 223
Query: 519 GYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEH 578
D LGG + RL +F + F K KD+ N RA+ +L + R K LS++ +
Sbjct: 224 AGDTHLGGEDFDNRLVEFCVQDFKR-KNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQA 282
Query: 579 FAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAG 638
+I+ L + ID+ + ++RA FE L D F PVE+ LK + + + +V+LVG
Sbjct: 283 TIEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGS 342
Query: 639 TRVPKVQEKITKVV-GVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQ 697
TR+PKVQ I G E K++N DEA A GA +AA L TG + + +D++L +
Sbjct: 343 TRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAIL-TGEQSSQ--VQDLLLLDVT 399
Query: 698 -VEFERESESG-DTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQ 755
+ E+ G TK+I+R + T P KK F Y + + E E +
Sbjct: 400 PLSLGLETAGGVMTKLIER-----NTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKD 454
Query: 756 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKG---IKAHFAMDESGILSLVNIELVVEK 812
+LG KF + G+ A +G I+ F +D +GIL+ V
Sbjct: 455 NNLLG-----KFHLDGIPPA----------PRGVPQIEVTFDIDANGILN-------VSA 492
Query: 813 QEAAESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAE 872
++ + +K+ T+T+ R + ++ +NEA E K +E ++ ++ ++
Sbjct: 493 EDKSTGKSNKI--TITNDKGRLSKADIDRMVNEA--EKYKAEDEANRERVEAKNGLENYC 548
Query: 873 ESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKLDSLNQI----- 927
S+KN Q VK +S S+ +T+ EK ++++L L+ NQ+
Sbjct: 549 YSMKNTLQDEK---------VKGKLSDSD----KATI-EKAIDEALEWLEK-NQLAEKEE 593
Query: 928 -EHAKVRKEKALNSLESLLFDA 948
EH + E N + + ++ A
Sbjct: 594 FEHKQKEVESVCNPIMTKMYQA 615
|
Length = 653 |
| >gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4, HYOU1, and similar proteins | Back alignment and domain information |
|---|
Score = 187 bits (477), Expect = 4e-52
Identities = 58/222 (26%), Positives = 102/222 (45%), Gaps = 3/222 (1%)
Query: 39 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSN 98
+DLG+ +A+ ++I +N+ S R TP++V F R GE + T N
Sbjct: 1 FGLDLGNNNSVLAVARN-RGIDIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTSNIKN 59
Query: 99 SYGYFLDLLGKSIDSPVVQLF-KSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLL 157
+ ++G P + K + D++ G V + ++ +L AM +
Sbjct: 60 TVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFI 119
Query: 158 HKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYG 217
K ++ I + I VP ++ + +R ++ A +AGL ++++ND TA ++YG
Sbjct: 120 DKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYG 179
Query: 218 IFKRKD-FNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERG 258
IFK E P V F D+G S T SIV+++ + K G
Sbjct: 180 IFKTDLPEGEEKPRIVAFVDIGHSSYTCSIVAFKKGQLKVLG 221
|
This subfamily include the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p, Sse2p, and Lhs1p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is also regulated by J-domain proteins. Length = 377 |
| >gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4 | Back alignment and domain information |
|---|
Score = 186 bits (473), Expect = 2e-51
Identities = 129/399 (32%), Positives = 202/399 (50%), Gaps = 20/399 (5%)
Query: 284 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFP 343
+V+ +DLG + VA+ G +E N+ S R TP ++F R+ G A+
Sbjct: 1 SVVGIDLGFQSCYVAVARAG-GIETIANEYSDRCTPACISFGPKNRSIGAAAKSQVISNA 59
Query: 344 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVA--DEERGTIVFKTNDNELYHVEELVA 401
N+ F G++ P VQ K Y D+V G V + + E++ A
Sbjct: 60 KNTVQGFKRFHGRAFSDPFVQAEKPSLAY-DLVQLPTGSTGIKVMYMEEERNFTTEQVTA 118
Query: 402 MLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVAL 461
MLL K +E A + + + + V+ VP ++ ER+S++ A ++AGL L+LMN+ TAVAL
Sbjct: 119 MLLTKLKETAESALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRLMNETTAVAL 178
Query: 462 NYGIFKRK-DFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGY 520
YGI+K+ E P +V+F DMG + VS+ ++ K K VL +
Sbjct: 179 AYGIYKQDLPALEEKPRNVVFVDMGHSAYQVSVCAFNKGKLK------------VLATAF 226
Query: 521 DRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFA 580
D TLGG + L ++ ++F KK D+ RA+ +L +E +LK ++SAN
Sbjct: 227 DTTLGGRKFDEVLVNYFCEEFG--KKYKLDIKSKIRALLRLSQECEKLKKLMSANASDLP 284
Query: 581 -QIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGT 639
IE +++ID + R +F + +DL RV P+ L+ + + + I V +VG T
Sbjct: 285 LNIECFMNDIDVSGTMNRGKFLEMCDDLLARVEPPLRSVLEQAKLKKEDIYAVEIVGGAT 344
Query: 640 RVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 678
R+P V+EKI+K G E+S LN DEA A G + A LS
Sbjct: 345 RIPAVKEKISKFFGKEVSTTLNADEAVARGCALQCAILS 383
|
Human HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1) responds to acidic pH stress, is involved in the radioadaptive response, is required for normal spermatogenesis and is overexpressed in hepatocellular carcinoma. It participates in a pathway along with NBS1 (Nijmegen breakage syndrome 1, also known as p85 or nibrin), heat shock transcription factor 4b (HDF4b), and HSPA14 (belonging to a different HSP70 subfamily) that induces tumor migration, invasion, and transformation. HSPA4 expression in sperm was increased in men with oligozoospermia, especially in those with varicocele. HSPA4 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L | Back alignment and domain information |
|---|
Score = 186 bits (472), Expect = 2e-51
Identities = 125/399 (31%), Positives = 202/399 (50%), Gaps = 20/399 (5%)
Query: 284 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFP 343
+V+ +DLG +A+ G +E N+ S R TP ++ R G A+
Sbjct: 1 SVVGIDLGFLNCYIAVARSG-GIETIANEYSDRCTPACISLGSRTRAIGNAAKSQIVTNV 59
Query: 344 SNSYGYFLDLLGKSIDSPVVQLFKSRFPY-YDIVADEERGTIVFKTNDNELYHVEELVAM 402
N+ F L G+S D P+VQ + R PY + + G V + + +E++ M
Sbjct: 60 RNTIHGFKKLHGRSFDDPIVQTERIRLPYELQKMPNGSVGVKVRYLEEERPFAIEQVTGM 119
Query: 403 LLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALN 462
LL K +E + + + + + VI +P +F ER+S++ A ++AGL L+LMN+ TAVAL
Sbjct: 120 LLAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLNCLRLMNETTAVALA 179
Query: 463 YGIFKRKDFN--ETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGY 520
YGI+K +D + P +V+F DMG + VS+ ++ K K VL +
Sbjct: 180 YGIYK-QDLPALDEKPRNVVFIDMGHSAYQVSVCAFNKGKLK------------VLATTF 226
Query: 521 DRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFA 580
D LGG L D+ +F K +V EN RA+ +L++E +LK ++SAN
Sbjct: 227 DPYLGGRNFDEALVDYFCDEFKTKYKI--NVKENSRALLRLYQECEKLKKLMSANASDLP 284
Query: 581 -QIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGT 639
IE ++++D + RA+FE L L RV P++ ++ + + + I + +VG T
Sbjct: 285 LNIECFMNDLDVSSKMNRAQFEQLCASLLARVEPPLKAVMEQANLQREDIYSIEIVGGAT 344
Query: 640 RVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 678
R+P V+E+IT ++S LN DEA A G + A LS
Sbjct: 345 RIPAVKEQITSFFLKDISTTLNADEAVARGCALQCAILS 383
|
Human HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28) is expressed ubiquitously and predominantly in the testis. It is required for normal spermatogenesis and plays a role in osmotolerance. HSPA4L belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human HSPA9 and similar proteins | Back alignment and domain information |
|---|
Score = 182 bits (465), Expect = 2e-50
Identities = 135/402 (33%), Positives = 209/402 (51%), Gaps = 38/402 (9%)
Query: 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDA--QIIGTR 341
++ +DLG+ VA++ G P I N E R TP++VAF K GER G+ A Q +
Sbjct: 4 IIGIDLGTTNSCVAVMEGGEPTVIP-NAEGSRTTPSVVAFTKKGERLVGQPAKRQAVTN- 61
Query: 342 FPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVA 401
P N+ +G+ D + + PY +V + + +N + Y +E+ A
Sbjct: 62 -PENTIFSIKRFMGRKFDEVEEE---RKVPYKVVVDEGGNYKVEIDSNGKD-YTPQEISA 116
Query: 402 MLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVAL 461
M+L K +E A G+ + EAVI VP YFN +RQ+ AG++AGL+VL+++N+ TA AL
Sbjct: 117 MILQKLKEDAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAAL 176
Query: 462 NYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYD 521
YG+ K+ NE ++ YD+G + VSI+ G E VL D
Sbjct: 177 AYGLDKKG--NEK----ILVYDLGGGTFDVSILEI------GDGVFE------VLATNGD 218
Query: 522 RTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQ 581
LGG + R+ D+L ++F K+ D+ ++ A+ +L + A + K LS+ E
Sbjct: 219 THLGGDDFDQRIIDWLVEEF--KKEEGIDLRKDKMALQRLKEAAEKAKIELSSVTETEIN 276
Query: 582 IEGL-IDE-----IDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILV 635
+ + D ++ L TRA+FE L EDL +R PV+QALK + + I +VILV
Sbjct: 277 LPFITADATGPKHLEMTL--TRAKFEELTEDLVERTIEPVKQALKDAKLSPSDIDEVILV 334
Query: 636 GAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADL 677
G TR+P VQE + ++ G E +K +N DE A+GA + L
Sbjct: 335 GGSTRIPAVQELVKELFGKEPNKGVNPDEVVAIGAAIQGGVL 376
|
This subfamily includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae Stress-seventy subfamily Q protein 1/Ssq1p (also called Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. Length = 376 |
| >gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4 and similar proteins | Back alignment and domain information |
|---|
Score = 177 bits (451), Expect = 2e-48
Identities = 75/216 (34%), Positives = 119/216 (55%), Gaps = 6/216 (2%)
Query: 37 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFP 96
+V+ +D G+ VA+ G +++ N+ S R+TP+LV+F + +R GE A+
Sbjct: 1 SVVGIDFGNLNSVVAVARKGG-IDVVANEYSNRETPSLVSFGEKQRLIGEAAKNQAISNF 59
Query: 97 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFK-TNDNE--LYHVEELV 153
N+ F L+G+ D P VQ P+ +V + G + K E ++ E+++
Sbjct: 60 KNTVRNFKRLIGRKFDDPEVQKELKFLPF-KVVELPD-GKVGIKVNYLGEEKVFSPEQVL 117
Query: 154 AMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVA 213
AMLL K +E A + + + VI VP YF +R+++L A ++AGL L+LMN+ TA A
Sbjct: 118 AMLLTKLKEIAEKALKGKVTDCVISVPSYFTDAQRRALLDAAQIAGLNCLRLMNETTATA 177
Query: 214 LNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSY 249
L YGI+K E P +V F D+G ST VSIV++
Sbjct: 178 LAYGIYKTDLPEEEKPRNVAFVDIGHSSTQVSIVAF 213
|
This subgroup includes the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), Saccharomyces cerevisiae Sse1p and Sse2p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 381 |
| >gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces cerevisiae Ssq1 and similar proteins | Back alignment and domain information |
|---|
Score = 176 bits (449), Expect = 2e-48
Identities = 128/393 (32%), Positives = 204/393 (51%), Gaps = 23/393 (5%)
Query: 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 344
++ +DLG+ VA++ P+ I N E KR TP++V+F K GE A+ P
Sbjct: 4 IIGIDLGTTNSCVAVIDKTTPVIIE-NAEGKRTTPSIVSFTKTGILVGEAAKRQEALHPE 62
Query: 345 NSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLL 404
N++ L+G+ VQ K + PYY IV E R + + + Y ++ + +L
Sbjct: 63 NTFFATKRLIGRQFKDVEVQR-KMKVPYYKIV--EGRNGDAWIYTNGKKYSPSQIASFVL 119
Query: 405 HKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYG 464
K ++ A G+ ++EAVI VP YFN +RQ+ AG LAGLKVL+++N+ TA AL YG
Sbjct: 120 KKLKKTAEAYLGKRVDEAVITVPAYFNDSQRQATKDAGTLAGLKVLRIINEPTAAALAYG 179
Query: 465 IFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTL 524
I KRK ++ YD+G + +SI++ E G E V D L
Sbjct: 180 IDKRK-----ENKNIAVYDLGGGTFDISILNI------EDGVFE------VKATNGDTML 222
Query: 525 GGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEG 584
GG + + ++ K+F K D+ N +A+ ++ + A + K LS++ E ++
Sbjct: 223 GGEDFDNAIVQYIIKEFKR--KYKIDLTRNKKAIQRIKEAAEKAKIELSSSEESVIELPY 280
Query: 585 LIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKV 644
L ++ +TR EFE L + + R YP +Q LK + + I +VILVG TR+P +
Sbjct: 281 LDGPKHLRITITRREFEQLRKSICKRTIYPCKQCLKDAGLRKKDIDEVILVGGMTRMPYI 340
Query: 645 QEKITKVVGVELSKNLNTDEAAALGAVYKAADL 677
Q + ++ G + SK++N DEA ALGA + + L
Sbjct: 341 QNVVQEIFGKKPSKSVNPDEAVALGAAIQGSIL 373
|
Ssq1p (also called Stress-seventy subfamily Q protein 1, Ssc2p, Ssh1p, mtHSP70 homolog) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial chaperone that is involved in iron-sulfur (Fe/S) center biogenesis. Ssq1p plays a role in the maturation of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Length = 373 |
| >gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK | Back alignment and domain information |
|---|
Score = 180 bits (459), Expect = 1e-47
Identities = 189/641 (29%), Positives = 298/641 (46%), Gaps = 121/641 (18%)
Query: 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFP 343
++ +DLG+ VA++ G P+ I N E R TP++VAF K GER G+ A+ P
Sbjct: 2 IIGIDLGTTNSCVAVMEGGEPVVIP-NAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNP 60
Query: 344 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAML 403
N+ +G+ D V R PY +V D G + K + E Y +E+ AM+
Sbjct: 61 ENTIYSIKRFMGRRFD--EVTEEAKRVPY-KVVGDG--GDVRVKVDGKE-YTPQEISAMI 114
Query: 404 LHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNY 463
L K ++ A G+ + EAVI VP YFN +RQ+ AG++AGL+VL+++N+ TA AL Y
Sbjct: 115 LQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAY 174
Query: 464 GIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 523
G+ K K +E ++ +D+G + VSI+ G E VL D
Sbjct: 175 GLDKSKK-DEK----ILVFDLGGGTFDVSILEIG------DGVFE------VLSTAGDTH 217
Query: 524 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIE 583
LGG + R+ D+L +F K+ D+ ++ A+ +L + A + K LS+
Sbjct: 218 LGGDDFDQRIIDWLADEFK--KEEGIDLSKDKMALQRLKEAAEKAKIELSSVLS------ 269
Query: 584 GLIDEID-------------FKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVIS 630
EI+ ++ +TRA+FE L DL +R PV QALK + + I
Sbjct: 270 ---TEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEPVRQALKDAGLSASDID 326
Query: 631 QVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKD 690
+VILVG TR+P VQE + G E +K++N DE A+GA + V K KD
Sbjct: 327 EVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQGG-------VLKGDVKD 379
Query: 691 IVLY---PIQVEFERESESG-DTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYAS 746
++L P+ + E+ G TK+I+R + T P KK F S A+
Sbjct: 380 VLLLDVTPLSLGI--ETLGGVMTKLIER-----NTTIPTKKSQVF-----------STAA 421
Query: 747 ------EIEHLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKG---IKAHFAMDE 797
+I L E+ K + +F+++G+ A +G I+ F +D
Sbjct: 422 DNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPA----------PRGVPQIEVTFDIDA 471
Query: 798 SGILSLVNIELVVEKQEA----AESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKT 853
+GIL + + K+++ A S LS+ +E E+ + EA E N
Sbjct: 472 NGILHVSAKDKGTGKEQSITITASSGLSE--------------EEIERMVKEA--EANAE 515
Query: 854 AEEPSKNV----NSTESQQQSAEESVKNATQTPDADKKPKI 890
++ K N+ +S AE+++K A A++K KI
Sbjct: 516 EDKKRKEEIEARNNADSLAYQAEKTLKEAGDKLPAEEKEKI 556
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved [Protein fate, Protein folding and stabilization]. Length = 595 |
| >gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14 and similar proteins | Back alignment and domain information |
|---|
Score = 167 bits (426), Expect = 3e-45
Identities = 110/371 (29%), Positives = 176/371 (47%), Gaps = 20/371 (5%)
Query: 307 EIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLF 366
++ N R TP +VAF E G A+ R +N+ +LG+S P Q
Sbjct: 23 DVVANDAGDRVTPAVVAFTDTEVIVGLAAKQGRIRNAANTIVKNKQILGRSYSDPFKQKE 82
Query: 367 KSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIV 426
K+ I D E +F + +E+ ++ K +E A + G + VI V
Sbjct: 83 KTESSCKIIEKDGEPKYEIFTEEKTKHVSPKEVAKLIFKKMKEIAQSALGSDSKDVVITV 142
Query: 427 PGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGA 486
P YF++ ++ ++ +A E AG VL+++++ +A AL YGI + + T +V+ Y +G
Sbjct: 143 PVYFSEKQKLALREAAEEAGFNVLRIIHEPSAAALAYGIGQD---SPTGKSYVLVYRLGG 199
Query: 487 WSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKK 546
ST V+I+ G VL D LGG L +L NE K+
Sbjct: 200 TSTDVTILRVN------SGMYR------VLATSTDDNLGGESFTETLSQYLA---NEFKR 244
Query: 547 TTK-DVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNE 605
K DV N RA+ KL A K +LS +E L + IDF+ V+RA FE+L
Sbjct: 245 KWKQDVRGNARAMMKLNNAAEVAKQILSTLPSANCFVESLYEGIDFQCSVSRARFESLCS 304
Query: 606 DLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITK-VVGVELSKNLNTDE 664
LF + P+E+ L+ + + I++V+L G +R+PK+Q+ I VE+ +++ DE
Sbjct: 305 SLFPKCLEPIEKVLEQANLTKTDINKVVLCGGSSRIPKLQQLIKDLFPSVEVLNSISPDE 364
Query: 665 AAALGAVYKAA 675
A+GA +A
Sbjct: 365 VIAIGAAKQAG 375
|
Human HSPA14 (also known as 70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene encoding HSPA14 maps to 10p13), is ribosome-associated and belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HSPA14 interacts with the J-protein MPP11 to form the mammalian ribosome-associated complex (mRAC). HSPA14 participates in a pathway along with Nijmegen breakage syndrome 1 (NBS1, also known as p85 or nibrin), heat shock transcription factor 4b (HSF4b), and HSPA4 (belonging to a different subfamily), that induces tumor migration, invasion, and transformation. HSPA14 is a potent T helper cell (Th1) polarizing adjuvant that contributes to antitumor immune responses. Length = 375 |
| >gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and similar proteins | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 2e-43
Identities = 125/383 (32%), Positives = 183/383 (47%), Gaps = 37/383 (9%)
Query: 288 VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSY 347
+DLG+ VA V G ++I ++ + P++V + G + G DA + P N+
Sbjct: 5 IDLGTTNSLVASVLSG-KVKILPDENGRVLLPSVVHYGDGGISVGHDALKLAISDPKNTI 63
Query: 348 GYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKA 407
L+GKSI+ K FPY I+ + G I+F T + VE + A +L
Sbjct: 64 SSVKRLMGKSIEDI-----KKSFPYLPILEGKNGGIILFHTQQGTVTPVE-VSAEILKAL 117
Query: 408 REYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFK 467
+E A S G I AVI VP YF+ +RQ+ A LAGL VL+L+N+ TA AL YG+ K
Sbjct: 118 KERAEKSLGGEIKGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAALAYGLDK 177
Query: 468 RKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGL 527
+K+ YD+G + VSI+ +G E VL G D LGG
Sbjct: 178 KKE------GIYAVYDLGGGTFDVSILKL------HKGVFE------VLATGGDSALGGD 219
Query: 528 EMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLID 587
+ L + L +KK + A+L A + K LS E +E +
Sbjct: 220 DFDQLLAELL------LKKYGLKSLISDEDQAELLLIARKAKEALSGAEE----VE--VR 267
Query: 588 EIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEK 647
DFK +TR EFE L + L + +QAL+ + + + I VILVG TR+P VQE
Sbjct: 268 GQDFKCTITREEFEKLIDPLVKKTLNICKQALRDAGLSVKDIKGVILVGGSTRIPLVQEA 327
Query: 648 ITKVVGVELSKNLNTDEAAALGA 670
++K G + ++N DE A+GA
Sbjct: 328 VSKFFGQKPLCDINPDEVVAIGA 350
|
Escherichia coli HscA (heat shock cognate protein A, also called Hsc66), belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HscA's partner J-domain protein is HscB; it does not appear to require a NEF, and has been shown to be induced by cold-shock. The HscA-HscB chaperone/co-chaperone pair is involved in [Fe-S] cluster assembly. Length = 355 |
| >gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9, Escherichia coli DnaK, and similar proteins | Back alignment and domain information |
|---|
Score = 161 bits (408), Expect = 7e-43
Identities = 132/402 (32%), Positives = 196/402 (48%), Gaps = 49/402 (12%)
Query: 284 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRF 342
AV+ +DLG+ VA++ P I N E R TP++VAF K GER G A+
Sbjct: 3 AVIGIDLGTTNSCVAVMEGKTPKVIE-NAEGARTTPSVVAFTKDGERLVGMPAKRQAVTN 61
Query: 343 PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVAD------EERGTIVFKTNDNELYHV 396
P N+ L+G+ D P VQ PY + A E G + Y
Sbjct: 62 PENTLYATKRLIGRRFDDPEVQKDIKNVPYKIVKASNGDAWVEAHG---------KKYSP 112
Query: 397 EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDY 456
++ A +L K +E A G+ + AVI VP YFN +RQ+ AG++AGL VL+++N+
Sbjct: 113 SQIGAFVLMKMKETAEAYLGKPVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEP 172
Query: 457 TAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVL 516
TA AL YG ++ + + YD+G + +SI+ Q +G E V
Sbjct: 173 TAAALAYG------LDKKDDKVIAVYDLGGGTFDISILEIQ------KGVFE------VK 214
Query: 517 GVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANN 576
D LGG + L L K+F K+ D+ ++ A+ +L + A + K LS++
Sbjct: 215 STNGDTFLGGEDFDNALLRHLVKEFK--KEQGIDLTKDNMALQRLREAAEKAKIELSSS- 271
Query: 577 EHFAQIEGLIDEID--------FKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDV 628
Q + + I + +TRA+FE+L DL R P ++ALK + V
Sbjct: 272 ---LQTDINLPYITADASGPKHLNMKLTRAKFESLVGDLIKRTIEPCKKALKDAGVSKSD 328
Query: 629 ISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGA 670
I +VILVG TR+PKVQE + ++ G E SK +N DEA A+GA
Sbjct: 329 IGEVILVGGMTRMPKVQETVKEIFGKEPSKGVNPDEAVAIGA 370
|
This subgroup includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, and Saccharomyces cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. HSPA9 is involved in multiple processses including mitochondrial import, antigen processing, control of cellular proliferation and differentiation, and regulation of glucose responses. During glucose deprivation-induced cellular stress, HSPA9 plays an important role in the suppression of apoptosis by inhibiting a conformational change in Bax that allow the release of cytochrome c. DnaK modulates the heat shock response in Escherichia coli. It protects E. coli from protein carbonylation, an irreversible oxidative modification that increases during organism aging and bacterial growth arrest. Under severe thermal stress, it functions as part of a bi-chaperone system: the DnaK system and the ring-forming AAA+ chaperone ClpB (Hsp104) system, to promote cell survival. DnaK has also been shown to cooperate with GroEL and the ribosome-associated Escherichia coli Trigger Factor in the proper folding of cytosolic proteins. S. cerevisiae Ssc1p is the major HSP70 chaperone of the mitochondrial matrix, promoting translocation of proteins from the cytosol, across the inner membrane, to the matrix, and their subsequent folding. Ssc1p interacts with Tim44, a peripheral inner membrane protein associated with the TIM23 protein translocase. It is also a subunit of the endoSceI site-specific endoDNase and is required for full endoSceI activity. Ssc1p plays roles in the import of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Ssc1 also participates in translational regulation of cytochrome c oxidase (COX) biogenesis by interacting with Mss51 and Mss51-containing complexes. Length = 377 |
| >gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Score = 164 bits (417), Expect = 3e-42
Identities = 115/388 (29%), Positives = 181/388 (46%), Gaps = 34/388 (8%)
Query: 288 VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFPSNS 346
+DLG+ VA V GVP E+ + E + P++V + K G G++A P N+
Sbjct: 4 IDLGTTNSLVASVRSGVP-EVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNT 62
Query: 347 YGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHK 406
L+G+SI+ S PY V D + +T + VE + A +L K
Sbjct: 63 ISSVKRLMGRSIEDIKTF---SILPY-RFV-DGPGEMVRLRTVQGTVTPVE-VSAEILKK 116
Query: 407 AREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIF 466
++ A S G + AVI VP YF+ +RQ+ A LAGL VL+L+N+ TA A+ YG+
Sbjct: 117 LKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLD 176
Query: 467 KRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGG 526
K + YD+G + VSI+ +G E VL G D LGG
Sbjct: 177 KASE------GIYAVYDLGGGTFDVSILKL------TKGVFE------VLATGGDSALGG 218
Query: 527 LEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLI 586
+ L ++ +K+ NP L + A K L+ +++ +
Sbjct: 219 DDFDHALAKWI------LKQLGISADLNPEDQRLLLQAARAAKEALTDAES--VEVDFTL 270
Query: 587 DEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQE 646
D DFK +TR EFEAL + L + +AL+ + + ++ I V+LVG TR+P V+
Sbjct: 271 DGKDFKGKLTRDEFEALIQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRR 330
Query: 647 KITKVVGVELSKNLNTDEAAALGAVYKA 674
+ ++ G E +++ D+ ALGA +A
Sbjct: 331 AVAELFGQEPLTDIDPDQVVALGAAIQA 358
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK [Protein fate, Protein folding and stabilization]. Length = 599 |
| >gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Score = 165 bits (418), Expect = 4e-42
Identities = 186/641 (29%), Positives = 297/641 (46%), Gaps = 89/641 (13%)
Query: 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFP 343
V+ +DLG+ VA + G P I N E +R TP++VA+ K G+R G+ A+ P
Sbjct: 41 VVGIDLGTTNSAVAAMEGGKPT-IVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNP 99
Query: 344 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAML 403
N++ +G+ + V + +S+ Y +V DE + + + EE+ A +
Sbjct: 100 ENTFFSVKRFIGRKMSE-VDE--ESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQV 156
Query: 404 LHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNY 463
L K + AS + +AVI VP YFN +R + AG +AGL+VL+++N+ TA +L Y
Sbjct: 157 LRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAY 216
Query: 464 GIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 523
G F++K NET ++ +D+G + VS++ G E VL D
Sbjct: 217 G-FEKKS-NET----ILVFDLGGGTFDVSVLEVG------DGVFE------VLSTSGDTH 258
Query: 524 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSA---NNEHFA 580
LGG + R+ D+L F K D+ ++ +A+ +L + A + K LS+ +
Sbjct: 259 LGGDDFDKRIVDWLASNFK--KDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLP 316
Query: 581 QIEGLID---EIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGA 637
I D ID L TRA+FE L DL DR PVE AL+ + + I +VILVG
Sbjct: 317 FITATADGPKHIDTTL--TRAKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGG 374
Query: 638 GTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQ 697
TR+P VQE + K+ G + + +N DE ALGA +A L+ DIVL +
Sbjct: 375 STRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGVLAGE-------VSDIVLLDVT 427
Query: 698 -VEFERESESG-DTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQ 755
+ E+ G TKII R + T P K F+ D +V EI L E+
Sbjct: 428 PLSLGLETLGGVMTKIIPR-----NTTLPTSKSEVFST-AADGQTSV----EINVLQGER 477
Query: 756 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKG---IKAHFAMDESGILSLVNIELVVEK 812
+ K + F + G+ A +G I+ F +D +GILS+ + K
Sbjct: 478 EFVRDNKSLGSFRLDGIPPA----------PRGVPQIEVKFDIDANGILSVSATDKGTGK 527
Query: 813 QEAAESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQS-- 870
++ T+T + K DE E+ + EA K A+E + ++ +++ Q+
Sbjct: 528 KQDI---------TITGASTLPK-DEVERMVQEA----EKFAKEDKEKRDAVDTKNQADS 573
Query: 871 ----AEESVKNATQTPDADKKPKI----VTVKEPISASETR 903
E+ +K AD K K+ +K+ I++ T+
Sbjct: 574 VVYQTEKQLKELGDKVPADVKEKVEAKLKELKDAIASGSTQ 614
|
Length = 673 |
| >gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 4e-41
Identities = 128/404 (31%), Positives = 206/404 (50%), Gaps = 39/404 (9%)
Query: 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFP 343
++ +DLG+ VA++ G P+ IA N E R TP++V F K GE G+ A+ P
Sbjct: 4 IVGIDLGTTNSVVAVMEGGKPVVIA-NAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNP 62
Query: 344 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKT-NDNELYHVEELVAM 402
N++ +G+ D + R PY I +E +G + K + EEL AM
Sbjct: 63 QNTFYNLKRFIGRRYDE--LDPESKRVPY-TIRRNE-QGNVRIKCPRLEREFAPEELSAM 118
Query: 403 LLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALN 462
+L K + AS G+ + AVI VP YFN +RQ+ AG +AGL+V +++N+ TA AL
Sbjct: 119 ILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVERILNEPTAAALA 178
Query: 463 YGIFKRKDFNETNPVHVMFYDMGAWSTTVSI--VSYQVVKTKERGFVETHPQVSVLGVGY 520
YG R ++T V+ +D+G + VS+ V V + K + G
Sbjct: 179 YG-LDRSS-SQT----VLVFDLGGGTFDVSLLEVGNGVFEVK-----------ATSG--- 218
Query: 521 DRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSA------ 574
D LGG + R+ D+L ++F E + D+ + +A+ +L + A + K LS
Sbjct: 219 DTQLGGNDFDKRIVDWLAEQFLEKEGI--DLRRDRQALQRLTEAAEKAKIELSGVSVTDI 276
Query: 575 NNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVIL 634
+ E I+ +L R +FE+L DL DR+ PV++ALK + + + I +V+L
Sbjct: 277 SLPFITATEDGPKHIETRL--DRKQFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVL 334
Query: 635 VGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 678
VG TR+P VQ+ + ++ E ++N+N DE A+GA +A L+
Sbjct: 335 VGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAGILA 378
|
Length = 668 |
| >gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 160 bits (408), Expect = 6e-41
Identities = 131/402 (32%), Positives = 196/402 (48%), Gaps = 77/402 (19%)
Query: 297 VAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQ----------------IIG 339
VA++ G P I N E R TP++VAF K GER G+ A+ ++G
Sbjct: 16 VAVMEGGEPKVIE-NAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMG 74
Query: 340 TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEEL 399
R VQ PY + AD G + + + Y +E+
Sbjct: 75 RRDE------------------EVQKDIKLVPYKIVKADN--GDAWVEIDGKK-YTPQEI 113
Query: 400 VAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAV 459
AM+L K ++ A G+ + EAVI VP YFN +RQ+ AG++AGL+VL+++N+ TA
Sbjct: 114 SAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAA 173
Query: 460 ALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKE--RGFVETHPQVSVLG 517
AL YG+ K+ D E ++ YD+G + VSI+ E G E VL
Sbjct: 174 ALAYGLDKKGD--EK----ILVYDLGGGTFDVSIL--------EIGDGVFE------VLS 213
Query: 518 VGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNE 577
D LGG + R+ D+L +F K+ D+ ++ A+ +L + A + K LS+ +
Sbjct: 214 TNGDTHLGGDDFDQRIIDYLADEFK--KENGIDLRKDKMALQRLKEAAEKAKIELSSAQQ 271
Query: 578 HFAQI---------EGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDV 628
+I G ++ KL TRA+FE L EDL +R P +QALK + + +
Sbjct: 272 --TEINLPFITADASGPKH-LEIKL--TRAKFEELTEDLVERTIEPCKQALKDAGLSVSD 326
Query: 629 ISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGA 670
I +VILVG TR+P VQE + + G E +K +N DE A+GA
Sbjct: 327 IDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGA 368
|
Length = 627 |
| >gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70 | Back alignment and domain information |
|---|
Score = 157 bits (398), Expect = 9e-40
Identities = 184/661 (27%), Positives = 300/661 (45%), Gaps = 102/661 (15%)
Query: 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFP 343
V+ +DLG+ VA++ G P I N E R TP++VA+ K G+ G+ A+ P
Sbjct: 4 VVGIDLGTTNSVVAVMEGGKPTVIP-NAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINP 62
Query: 344 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAML 403
N++ +G+ + + +++ Y + D + N+ + EE+ A +
Sbjct: 63 ENTFYSVKRFIGRKFSE-ISE--EAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQV 119
Query: 404 LHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNY 463
L K E AS G+ + +AVI VP YFN +RQ+ AG++AGL+VL+++N+ TA +L Y
Sbjct: 120 LRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLAY 179
Query: 464 GIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 523
G+ K+ NET ++ +D+G + VSI+ G E VL D
Sbjct: 180 GLDKKN--NET----ILVFDLGGGTFDVSILEVG------DGVFE------VLSTSGDTH 221
Query: 524 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLS---------- 573
LGG + ++ ++L K+F KK D+ ++ +A+ +L + A + K LS
Sbjct: 222 LGGDDFDKKIVNWLIKEFK--KKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLP 279
Query: 574 ---ANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVIS 630
A IE + TRA+FE L DL +R PVE ALK + + I
Sbjct: 280 FITATQTGPKHIEKTL---------TRAKFEELCSDLINRCRIPVENALKDAKLDKSDID 330
Query: 631 QVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKD 690
+V+LVG TR+P +QE + K++G + ++++N DE A+GA +A L+ +VK + D
Sbjct: 331 EVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVLAG--EVKDILLLD 388
Query: 691 IVLYPIQVEFERESESG-DTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIE 749
+ + V E+ G TKII R + T P KK F+ V D NV EI
Sbjct: 389 VTPLSLGV----ETLGGVMTKIIPR-----NTTIPTKKSEVFSTAV-DNQTNV----EIH 434
Query: 750 HLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKG---IKAHFAMDESGILSLVNI 806
L E+ K + F + G+ A +G I+ F +D +GILS+
Sbjct: 435 VLQGERELAKDNKSLGTFRLDGIPPA----------PRGVPQIEVTFDIDANGILSVTAK 484
Query: 807 ELVVEKQEAAESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKN------ 860
+ K+++ T+ S ++E + V E K A E +
Sbjct: 485 DKGTGKEQSI---------TIQ---GASTLPKDE--VERMVKEAEKNAAEDKEKREKIDL 530
Query: 861 VNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSK 920
N ES AE+ +K +KK KI + + R + N + ++ L +
Sbjct: 531 KNQAESLCYQAEKQLKELKDKISEEKKEKIENL-----IKKLRQALQNDNYESIKSLLEE 585
Query: 921 L 921
L
Sbjct: 586 L 586
|
Length = 621 |
| >gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of Saccharmomyces cerevisiae Ssz1pp and similar proteins | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 2e-39
Identities = 112/407 (27%), Positives = 183/407 (44%), Gaps = 36/407 (8%)
Query: 284 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDA--QIIGTR 341
V+ ++ G+ + +A ++ G IA N++ +R+ P+ +++H + G A Q+I R
Sbjct: 1 TVIGINFGNTYSSIACINQGKADVIA-NEDGERQIPSAISYHGEQEYHGNQAKAQLI--R 57
Query: 342 FPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVAD-----EERGTIVFKTNDNELYHV 396
N+ F DLLGK V + P V D +E+ V K + V
Sbjct: 58 NAKNTITNFRDLLGKPFSEIDVSAAAAAAPVPVAVIDVGGTVQEKEEPVPKE---TILTV 114
Query: 397 EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDY 456
E+ L + +E A G+ + AV+ VP +F+ + ++++KA E AGL VLQL+ +
Sbjct: 115 HEVTVRFLRRLKEAAEDFLGKKVAGAVLSVPTWFSDEQTEALVKAAEAAGLPVLQLIPEP 174
Query: 457 TAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVL 516
A L Y + + + V+ D G T VS+++ RG + T +L
Sbjct: 175 AAALLAYDAGEPTEDEALDRNVVVA-DFGGTRTDVSVIA-------VRGGLYT-----IL 221
Query: 517 GVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANN 576
+D LGG + L K+F KKT D N RA+AKL E+ K LSA+
Sbjct: 222 ATAHDPGLGGDTLDDALVKHFAKEFT--KKTKTDPRTNARALAKLRAESEITKKTLSAST 279
Query: 577 EHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVG 636
+E L + IDF + R FE L +F + V A+ + + I +V+LVG
Sbjct: 280 SATCSVESLAEGIDFHSSINRLRFELLASAVFRQFAAFVTSAVAKAGLDALDIDEVLLVG 339
Query: 637 AGTRVPKVQEKI-------TKVVG-VELSKNLNTDEAAALGAVYKAA 675
PK+ + T + + +SK L+ E A G +A+
Sbjct: 340 GTAFTPKLASNLSYLFPETTTITAPITVSKALDPSELVARGCAIQAS 386
|
Saccharomyces cerevisiae Ssz1p (also known as /Pdr13p/YHR064C) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but rather, function as NEFs for their Hsp70 partners, while other family members function as both chaperones and NEFs. Ssz1 does not function as a chaperone; it facilitates the interaction between the HSP70 Ssb protein and its partner J-domain protein Zuo1 (also known as zuotin) on the ribosome. Ssz1 is found in a stable heterodimer (called RAC, ribosome associated complex) with Zuo1. Zuo1 can only stimulate the ATPase activity of Ssb, when it is in complex with Ssz1. Ssz1 binds ATP but neither nucleotide-binding, hydrolysis, or its SBD, is needed for its in vivo function. Length = 386 |
| >gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia coli HscC and similar proteins | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 1e-38
Identities = 93/280 (33%), Positives = 146/280 (52%), Gaps = 26/280 (9%)
Query: 397 EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDY 456
EEL +++L +E A G+ + EAVI VP YFN +R++ +AGELAGLKV +L+N+
Sbjct: 85 EELSSLVLRSLKEDAEAYLGEPVTEAVISVPAYFNDEQRKATKRAGELAGLKVERLINEP 144
Query: 457 TAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVL 516
TA AL YG KD V +D+G + VS++ G +E +
Sbjct: 145 TAAALAYG-LHDKDEETKFLV----FDLGGGTFDVSVLELF------DGVMEVR---ASA 190
Query: 517 GVGYDRTLGGLEM-QIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSAN 575
G D LGG + + FL K + + D P +A+L + A R K LS
Sbjct: 191 G---DNYLGGEDFTRALAEAFLKK--HGLDFEKLD----PSELARLLRAAERAKRALSDQ 241
Query: 576 NEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILV 635
E A++ I+ + + +TR EFE + + L +R+ P+E+AL+ + + I ++ILV
Sbjct: 242 EE--AEMSVRIEGEELEYTLTREEFEEICQPLLERLRQPIERALRDARLKPSDIDEIILV 299
Query: 636 GAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAA 675
G TR+P V++ ++++ G +LN DE ALGA +A
Sbjct: 300 GGATRMPVVRKLVSRLFGRFPLVHLNPDEVVALGAAIQAG 339
|
This subfamily includes Escherichia coli HscC (also called heat shock cognate protein C, Hsc62, or YbeW) and the the putative DnaK-like protein Escherichia coli ECs0689. It belongs to the heat shock protein 70 (Hsp70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, Hsp70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Two genes in the vicinity of the HscC gene code for potential cochaperones: J-domain containing proteins, DjlB/YbeS and DjlC/YbeV. HscC and its co-chaperone partners may play a role in the SOS DNA damage response. HscC does not appear to require a NEF. Length = 339 |
| >gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Score = 148 bits (374), Expect = 1e-36
Identities = 182/639 (28%), Positives = 292/639 (45%), Gaps = 89/639 (13%)
Query: 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFP 343
++ +DLG+ VAI+ P I N E R TP++VAF + G+R G A+ P
Sbjct: 43 IVGIDLGTTNSCVAIMEGSQPKVIE-NSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNP 101
Query: 344 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAML 403
N+ L+G+ D + + PY + A I + Y ++ A +
Sbjct: 102 ENTVFATKRLIGRRYDEDATKKEQKILPYKIVRASNGDAWI---EAQGKKYSPSQIGAFV 158
Query: 404 LHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNY 463
L K +E A G+ + +AVI VP YFN +RQ+ AG++AGL VL+++N+ TA AL +
Sbjct: 159 LEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAF 218
Query: 464 GIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 523
G+ K N+ + V YD+G + +SI+ G E V + +
Sbjct: 219 GMDK----NDGKTIAV--YDLGGGTFDISILEIL------GGVFE------VKATNGNTS 260
Query: 524 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSAN-----NEH 578
LGG + R+ ++L +F K+ D+ ++ A+ +L + A K LS+ N
Sbjct: 261 LGGEDFDQRILNYLIAEFK--KQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLP 318
Query: 579 F--AQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVG 636
F A G + KL +RA+ E L DL + P E+ +K + V D ++ VILVG
Sbjct: 319 FITADQSG-PKHLQIKL--SRAKLEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVG 375
Query: 637 AGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPI 696
TR+PKV E + K+ G E SK +N DEA A+GA +A V K KD++L +
Sbjct: 376 GMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAG-------VLKGEIKDLLLLDV 428
Query: 697 -QVEFERESESGD-TKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPE 754
+ E+ G T++I R + T P KK F+ D V I+ E
Sbjct: 429 TPLSLGIETLGGVFTRLINR-----NTTIPTKKSQVFST-AADNQTQVG----IKVFQGE 478
Query: 755 QIAMLGTKQISKFDVSGVSEAFGKHNEENAESKG---IKAHFAMDESGILSLVNIELVV- 810
+ K + +FD+ G+ A +G I+ F +D +GI+++ ++
Sbjct: 479 REMAADNKLLGQFDLVGIPPA----------PRGVPQIEVTFDVDANGIMNISAVDKSTG 528
Query: 811 EKQEAAESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKNV----NSTES 866
+KQE T+ S S +E EK + EA E K +E K + N E+
Sbjct: 529 KKQEI----------TIQSSGGLSD-EEIEKMVKEA--EEYKEQDEKKKELVDAKNEAET 575
Query: 867 QQQSAEESVKN-ATQTPDADK---KPKIVTVKEPISASE 901
S E+ + + + DADK K KI ++ +S+ +
Sbjct: 576 LIYSVEKQLSDLKDKISDADKDELKQKITKLRSTLSSED 614
|
Length = 663 |
| >gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Score = 147 bits (372), Expect = 2e-36
Identities = 159/613 (25%), Positives = 265/613 (43%), Gaps = 69/613 (11%)
Query: 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 344
V+ VDLG+ + VA + + N E R TP++VAF E+ G A+ P
Sbjct: 29 VIGVDLGTTYSCVATMDGDKA-RVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQ 87
Query: 345 NSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLL 404
+++ L+G+ + +Q PY + A G + + + Y ++ A +L
Sbjct: 88 STFYAVKRLIGRRFEDEHIQKDIKNVPYKIVRAGN--GDAWVQDGNGKQYSPSQIGAFVL 145
Query: 405 HKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYG 464
K +E A G ++ AV+ P YFN +RQ+ AG +AGL V++++N+ TA AL YG
Sbjct: 146 EKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALAYG 205
Query: 465 IFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTL 524
+ K KD + YD+G + +S++ G E V D L
Sbjct: 206 MDKTKD------SLIAVYDLGGGTFDISVLEIA------GGVFE------VKATNGDTHL 247
Query: 525 GGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAG-RLKNVLSANNEHFAQIE 583
GG + + L D++ E +KT+ R + +EA + K LS+ E +
Sbjct: 248 GGEDFDLALSDYI---LEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLP 304
Query: 584 GLIDEID----FKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGT 639
+ D ++ ++R++FE + + L +R P +Q +K + V + I+ V+LVG T
Sbjct: 305 FITANADGAQHIQMHISRSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMT 364
Query: 640 RVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVE 699
R+PKV E++ K + + +N DEA ALGA L VK + D+ + +E
Sbjct: 365 RMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLRG--DVKGLVLLDVTPLSLGIE 422
Query: 700 FERESESGDTKIIKRMLFGPSNT-YPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQIAM 758
G + RM+ P NT P KK TF+ D V I+ E+
Sbjct: 423 -----TLGG--VFTRMI--PKNTTIPTKKSQTFST-AADNQTQVG----IKVFQGEREMA 468
Query: 759 LGTKQISKFDVSGVSEAFGKHNEENAESKG---IKAHFAMDESGILSLVNIELVVEKQEA 815
+ + +FD+ G+ A +G I+ F +D +GI V K +A
Sbjct: 469 ADNQMMGQFDLVGIPPA----------PRGVPQIEVTFDIDANGICH------VTAKDKA 512
Query: 816 AESPLSKLGNTLTSLFSRSKTD-ENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEES 874
T+T+ SK E +E E ++ E + N+ E+Q +AE
Sbjct: 513 TG---KTQNITITANGGLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQ 569
Query: 875 VKNATQTPDADKK 887
+ DA+K+
Sbjct: 570 LGEWKYVSDAEKE 582
|
Length = 657 |
| >gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 143 bits (363), Expect = 2e-35
Identities = 160/531 (30%), Positives = 256/531 (48%), Gaps = 67/531 (12%)
Query: 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFP 343
V+ +DLG+ VA++ G P+ I N E R TP++V F K G+R G+ A+
Sbjct: 4 VIGIDLGTTNSCVAVLEGGKPIVIP-NSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNA 62
Query: 344 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAML 403
N+ +G+ D + +SR PY + ++ + + + Y +E+ AM+
Sbjct: 63 ENTVYSIKRFIGRRWDDTEEE--RSRVPYTCVKGRDDTVNVQIRGRN---YTPQEISAMI 117
Query: 404 LHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNY 463
L K ++ A G+ + +AVI VP YF +RQ+ AG +AGL+VL+++N+ TA AL Y
Sbjct: 118 LQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALAY 177
Query: 464 GIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 523
G+ K +D + ++ +D+G + VSI+ G E V +
Sbjct: 178 GLDK-QDQEQ----LILVFDLGGGTFDVSILQLG------DGVFE------VKATAGNNH 220
Query: 524 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSAN-----NEH 578
LGG + + D+L + F + + D+ ++ A+ +L + A + K LS+ N
Sbjct: 221 LGGDDFDNCIVDWLVENFQQQEG--IDLSQDKMALQRLREAAEKAKIELSSMLTTSINLP 278
Query: 579 FAQIEGLIDEIDFKLL---VTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILV 635
F DE K L +TRA+FE L +DL + P++QALK + + + I +VILV
Sbjct: 279 FITA----DETGPKHLEMELTRAKFEELTKDLVEATIEPMQQALKDAGLKPEDIDRVILV 334
Query: 636 GAGTRVPKVQEKITKVV-GVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLY 694
G TR+P VQE I K G + +++N DEA ALGA +A L G +VK + D+
Sbjct: 335 GGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVL--GGEVKDLLLLDVT-- 390
Query: 695 PIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPE 754
P+ + E E TKII+R + T P K F+ D +V EI L E
Sbjct: 391 PLSLGIETLGEVF-TKIIER-----NTTIPTSKSQVFSTAT-DGQTSV----EIHVLQGE 439
Query: 755 QIAMLGTKQISKFDVSGVSEAFGKHNEENAESKG---IKAHFAMDESGILS 802
+ K + KF ++G+ A +G I+ F +D +GIL
Sbjct: 440 RAMAKDNKSLGKFLLTGIPPA----------PRGVPQIEVSFEIDVNGILK 480
|
Length = 653 |
| >gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 4e-35
Identities = 107/394 (27%), Positives = 180/394 (45%), Gaps = 41/394 (10%)
Query: 279 HSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQII 338
H +AV +DLG+ VA V G E+ +++ + P++V + + G +A+
Sbjct: 16 HQRRLAV-GIDLGTTNSLVATVRSGQA-EVLPDEQGRVLLPSVVRYLEDGIEVGYEARAN 73
Query: 339 GTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPY--YDIVADEERGTIVFKTNDNELYHV 396
+ P N+ +G+S+ + R+P+ Y VA E G + +T V
Sbjct: 74 AAQDPKNTISSVKRFMGRSLADI-----QQRYPHLPYQFVASEN-GMPLIRTAQGLKSPV 127
Query: 397 EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDY 456
E + A +L R+ A + G ++ AVI VP YF+ +RQ+ A LAGL VL+L+N+
Sbjct: 128 E-VSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEP 186
Query: 457 TAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVL 516
TA A+ YG+ D + V + YD+G + +SI+ +G E VL
Sbjct: 187 TAAAIAYGL----D-SGQEGVIAV-YDLGGGTFDISILRL------SKGVFE------VL 228
Query: 517 GVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANN 576
G D LGG + L D++ +++ +P L A K LS
Sbjct: 229 ATGGDSALGGDDFDHLLADWI------LEQAGLSPRLDPEDQRLLLDAARAAKEALSDA- 281
Query: 577 EHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVG 636
+E + ++ +TR +F AL L R +AL+ + V D + +V++VG
Sbjct: 282 ---DSVE--VSVALWQGEITREQFNALIAPLVKRTLLACRRALRDAGVEADEVKEVVMVG 336
Query: 637 AGTRVPKVQEKITKVVGVELSKNLNTDEAAALGA 670
TRVP V+E + + G +++ D+ A+GA
Sbjct: 337 GSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGA 370
|
Length = 616 |
| >gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein | Back alignment and domain information |
|---|
Score = 141 bits (359), Expect = 7e-35
Identities = 77/222 (34%), Positives = 115/222 (51%), Gaps = 12/222 (5%)
Query: 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 97
V+ +DLG+ VA++ G P E+ N E R TP++VAF ER G+ A+ P
Sbjct: 1 VIGIDLGTTNSCVAVMEGGGP-EVIANDEGNRTTPSVVAFTPKERLVGQAAKRQAVTNPK 59
Query: 98 NSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLL 157
N+ L+G+ PVVQ PY +V V E + E++ AM+L
Sbjct: 60 NTVFSVKRLIGRKFSDPVVQRDIKHVPY-KVVKLPNGDAGVEVRYLGETFTPEQISAMVL 118
Query: 158 HKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYG 217
K +E A G+ + +AVI VP YFN +RQ+ AG +AGL VL+++N+ TA AL YG
Sbjct: 119 QKLKETAEAYLGEPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVLRIINEPTAAALAYG 178
Query: 218 IFKRKDFNETNPVHVMFYDMGAWSTTVSIVS-----YQVVKT 254
+ K KD V+ +D+G + VSI+ ++V+ T
Sbjct: 179 LDK-KDKERN----VLVFDLGGGTFDVSILEIGDGVFEVLAT 215
|
Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region. Length = 598 |
| >gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13 and similar proteins | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 7e-34
Identities = 106/400 (26%), Positives = 191/400 (47%), Gaps = 33/400 (8%)
Query: 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKT-PTLVAFHKGERTFGEDAQIIGTRFP 343
++ +DLG+ + V + G + E+ RK+ P++VAF G G A P
Sbjct: 22 IIGIDLGTTYSSVGVYQAGTGETDIIPDENGRKSIPSVVAFTPGTVLVGYKAVEQAEHNP 81
Query: 344 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHV--EELVA 401
N+ +GK ++ R+ + + + G F NE V EE+ +
Sbjct: 82 QNTIYDAKRFIGKIFTKEELEFESDRYRF-KVKINSRNGAFFFSVLTNETKTVTPEEIGS 140
Query: 402 MLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVAL 461
L+ K R+ A G + +AVI VP F++ +R + +KA LAGL+VL+++N+ TA AL
Sbjct: 141 RLILKLRKMAEKYLGTPVGKAVISVPAEFDEKQRNATVKAANLAGLEVLRVINEPTAAAL 200
Query: 462 NYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYD 521
YG+ K++D +V+ D+G + VS+++ K+ G ++ G +
Sbjct: 201 AYGLHKKQDV-----FNVLVVDLGGGTLDVSLLN------KQGGMF-----LTRAMAGNN 244
Query: 522 RTLGGLEMQIRLRDFL----GKKFNEMKKTTKDVFENPRAV--AKLFKEAGRLKNVLSAN 575
R LGG + RL +L +K+ ++ +D+ +AV AK+ L S
Sbjct: 245 R-LGGQDFNQRLLQYLYQKIYEKYGKVPDNKEDIQRLRQAVEAAKI-----NLTLHPSTT 298
Query: 576 NEHFAQIEGLIDEI-DFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVIL 634
+ + I F+ +TR EFE LNEDLF ++ P+E L + + + +++L
Sbjct: 299 ISLNLTLLSEGESIVKFEYELTRDEFETLNEDLFQKILLPIEAVLAEGHLDKEEVDEIVL 358
Query: 635 VGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKA 674
VG TR+P++++ I + G + + +++ + A G +A
Sbjct: 359 VGGSTRIPRIRQVIGRFFGKDPNTSVDPELAVVTGVAIQA 398
|
Human HSPA13 (also called 70-kDa heat shock protein 13, STCH, "stress 70 protein chaperone, microsome-associated, 60kD", "stress 70 protein chaperone, microsome-associated, 60kDa"; the gene encoding HSPA13 maps to 21q11.1) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). STCH contains an NBD but lacks an SBD. STCH may function to regulate cell proliferation and survival, and modulate the TRAIL-mediated cell death pathway. The HSPA13 gene is a candidate stomach cancer susceptibility gene; a mutation in the NBD coding region of HSPA13 has been identified in stomach cancer cells. The NBD of HSPA13 interacts with the ubiquitin-like proteins Chap1 and Chap2, implicating HSPA13 in regulating cell cycle and cell death events. HSPA13 is induced by the Ca2+ ionophore A23187. Length = 417 |
| >gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1 | Back alignment and domain information |
|---|
Score = 126 bits (317), Expect = 5e-31
Identities = 75/222 (33%), Positives = 117/222 (52%), Gaps = 5/222 (2%)
Query: 37 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFP 96
+V+ D+G + +A+ G +E N+ S R TP++++F RT G A+
Sbjct: 1 SVVGFDVGFQSCYIAVARAG-GIETVANEFSDRCTPSVISFGSKNRTIGVAAKNQQITHA 59
Query: 97 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVA--DEERGTIVFKTNDNELYHVEELVA 154
+N+ F G++ + P VQ K Y D+V + G V + L+ VE++ A
Sbjct: 60 NNTVSNFKRFHGRAFNDPFVQKEKENLSY-DLVPLKNGGVGVKVMYMGEEHLFSVEQITA 118
Query: 155 MLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVAL 214
MLL K +E A + + + + VI VP +F ER+S+L A ++ GL L+LMND TAVAL
Sbjct: 119 MLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNCLRLMNDMTAVAL 178
Query: 215 NYGIFKRK-DFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTK 255
NYGI+K+ + P V+F DMG + VS ++ K K
Sbjct: 179 NYGIYKQDLPSLDEKPRIVVFVDMGHSAFQVSACAFNKGKLK 220
|
Human HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3) suppresses the aggregation of denatured proteins caused by heat shock in vitro, and may substitute for HSP70 family proteins to suppress the aggregation of denatured proteins in cells under severe stress. It reduces the protein aggregation and cytotoxicity associated with Polyglutamine (PolyQ) diseases, including Huntington's disease, which are a group of inherited neurodegenerative disorders sharing the characteristic feature of having insoluble protein aggregates in neurons. The expression of HSPH1 is elevated in various malignant tumors, including malignant melanoma, and there is a direct correlation between HSPH1 expression and B-cell non-Hodgkin lymphomas (B-NHLs) aggressiveness and proliferation. HSPH1 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 6e-30
Identities = 76/221 (34%), Positives = 109/221 (49%), Gaps = 20/221 (9%)
Query: 34 YGIAVMSVDLG---SEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQ 89
GI DLG S VA V G EI N E R TP++V F GE GE A+
Sbjct: 1 IGI-----DLGTTNSA---VAYVDNGGKPEIIPNGEGSRTTPSVVYFDGDGEVLVGEAAK 52
Query: 90 IIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHV 149
P N+ G F L+G+ D P+VQ K V + Y
Sbjct: 53 RQALDNPENTVGDFKRLIGRKFDDPLVQSAKKVIGVDRGAPIIP----VPVELGGKKYSP 108
Query: 150 EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDY 209
EE+ A++L K +E A G+ + EAVI VP YFN +R++ +A E+AGL V++L+N+
Sbjct: 109 EEVSALILKKLKEDAEAYLGEPVTEAVITVPAYFNDAQREATKEAAEIAGLNVVRLINEP 168
Query: 210 TAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQ 250
TA AL YG+ K+ + T ++ +D+G + VS+V +
Sbjct: 169 TAAALAYGLDKKDEKGRT----ILVFDLGGGTFDVSLVEVE 205
|
HSP70 (70-kDa heat shock protein) family chaperones assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some HSP70 family members are not chaperones but instead, function as NEFs to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle, some may function as both chaperones and NEFs. Length = 369 |
| >gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 8e-29
Identities = 65/211 (30%), Positives = 102/211 (48%), Gaps = 29/211 (13%)
Query: 41 VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFPSNS 99
+DLG+ VA++ G ++ N E +R TP++VAF K GE G+ A+ P N+
Sbjct: 10 IDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENT 69
Query: 100 YGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHK 159
+G+ + + + D + Y EE+ AM+L K
Sbjct: 70 IFSIKRKIGRGSNGLKISV----------------------EVDGKKYTPEEISAMILTK 107
Query: 160 AREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIF 219
+E A G+ + +AVI VP YFN +RQ+ A +AGL VL+L+N+ TA AL YG+
Sbjct: 108 LKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAYGLD 167
Query: 220 KRKDFNETNPVHVMFYDMGAWSTTVSIVSYQ 250
K K+ V+ YD+G + VS++
Sbjct: 168 KGKE------KTVLVYDLGGGTFDVSLLEIG 192
|
Length = 579 |
| >gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5 and similar proteins | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 4e-25
Identities = 71/223 (31%), Positives = 117/223 (52%), Gaps = 13/223 (5%)
Query: 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 97
V+ +DLG+ + V + G +EI N + R TP+ VAF GER G+ A+ T P
Sbjct: 3 VIGIDLGTTYSCVGVFKNG-RVEIIANDQGNRITPSYVAFTDGERLIGDAAKNQATSNPE 61
Query: 98 NSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTND-NELYHVEELVAML 156
N+ L+G+ D VQ PY +V + + I + + EE+ AM+
Sbjct: 62 NTIFDVKRLIGRKFDDKEVQKDIKLLPY-KVVNKDGKPYIEVDVKGEKKTFSPEEISAMV 120
Query: 157 LHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNY 216
L K +E A G+ + AV+ VP YFN +RQ+ AG +AGL V++++N+ TA A+ Y
Sbjct: 121 LTKMKEIAEAYLGKKVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAY 180
Query: 217 GIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS-----YQVVKT 254
G+ K+ E N ++ +D+G + VS+++ ++V+ T
Sbjct: 181 GLDKKGG--EKN---ILVFDLGGGTFDVSLLTIDNGVFEVLAT 218
|
This subfamily includes human HSPA5 (also known as 70-kDa heat shock protein 5, glucose-regulated protein 78/GRP78, and immunoglobulin heavy chain-binding protein/BIP, MIF2; the gene encoding HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p (also known as Grp78p), and related proteins. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. HSPA5 and Kar2p are chaperones of the endoplasmic reticulum (ER). Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Multiple ER DNAJ domain proteins have been identified and may exist in distinct complexes with HSPA5 in various locations in the ER, for example DNAJC3-p58IPK in the lumen. HSPA5-NEFs include SIL1 and an atypical HSP70 family protein HYOU1/ORP150. The ATPase activity of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p. Length = 374 |
| >gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human HSPA9 and similar proteins | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 5e-25
Identities = 74/212 (34%), Positives = 115/212 (54%), Gaps = 16/212 (7%)
Query: 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDA--QIIGTR 94
++ +DLG+ VA++ G P I N E R TP++VAF K GER G+ A Q +
Sbjct: 4 IIGIDLGTTNSCVAVMEGGEPTVIP-NAEGSRTTPSVVAFTKKGERLVGQPAKRQAVTN- 61
Query: 95 FPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVA 154
P N+ +G+ D + + PY +V + + +N + Y +E+ A
Sbjct: 62 -PENTIFSIKRFMGRKFDEVEEE---RKVPYKVVVDEGGNYKVEIDSNGKD-YTPQEISA 116
Query: 155 MLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVAL 214
M+L K +E A G+ + EAVI VP YFN +RQ+ AG++AGL+VL+++N+ TA AL
Sbjct: 117 MILQKLKEDAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAAL 176
Query: 215 NYGIFKRKDFNETNPVHVMFYDMGAWSTTVSI 246
YG+ K+ NE ++ YD+G + VSI
Sbjct: 177 AYGLDKKG--NEK----ILVYDLGGGTFDVSI 202
|
This subfamily includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae Stress-seventy subfamily Q protein 1/Ssq1p (also called Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. Length = 376 |
| >gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces cerevisiae Ssq1 and similar proteins | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 6e-25
Identities = 74/210 (35%), Positives = 114/210 (54%), Gaps = 9/210 (4%)
Query: 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 97
++ +DLG+ VA++ P+ I N E KR TP++V+F K GE A+ P
Sbjct: 4 IIGIDLGTTNSCVAVIDKTTPVIIE-NAEGKRTTPSIVSFTKTGILVGEAAKRQEALHPE 62
Query: 98 NSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLL 157
N++ L+G+ VQ K + PYY IV E R + + + Y ++ + +L
Sbjct: 63 NTFFATKRLIGRQFKDVEVQR-KMKVPYYKIV--EGRNGDAWIYTNGKKYSPSQIASFVL 119
Query: 158 HKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYG 217
K ++ A G+ ++EAVI VP YFN +RQ+ AG LAGLKVL+++N+ TA AL YG
Sbjct: 120 KKLKKTAEAYLGKRVDEAVITVPAYFNDSQRQATKDAGTLAGLKVLRIINEPTAAALAYG 179
Query: 218 IFKRKDFNETNPVHVMFYDMGAWSTTVSIV 247
I KRK ++ YD+G + +SI+
Sbjct: 180 IDKRK-----ENKNIAVYDLGGGTFDISIL 204
|
Ssq1p (also called Stress-seventy subfamily Q protein 1, Ssc2p, Ssh1p, mtHSP70 homolog) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial chaperone that is involved in iron-sulfur (Fe/S) center biogenesis. Ssq1p plays a role in the maturation of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Length = 373 |
| >gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 1e-24
Identities = 72/217 (33%), Positives = 117/217 (53%), Gaps = 7/217 (3%)
Query: 33 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 92
+ G A+ +DLG+ + V V +EI N + R TP+ VAF ER G+ A+
Sbjct: 2 TKGPAI-GIDLGTTYSCVG-VWKNENVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 93 TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTI-VFKTNDNELYHVEE 151
R P N+ L+G+ D VVQ +P+ +++ I V + + +H EE
Sbjct: 60 ARNPENTVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEE 119
Query: 152 LVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTA 211
+ +M+L K +E A G+ + +AV+ VP YFN +RQ+ AG +AGL VL+++N+ TA
Sbjct: 120 ISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTA 179
Query: 212 VALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248
A+ YG+ K K E N V+ +D+G + VS+++
Sbjct: 180 AAIAYGLDK-KGDGEKN---VLIFDLGGGTFDVSLLT 212
|
Length = 653 |
| >gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar proteins | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 4e-24
Identities = 66/208 (31%), Positives = 111/208 (53%), Gaps = 5/208 (2%)
Query: 41 VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSY 100
+DLG+ + V + G +EI N + R TP+ VAF ER G+ A+ P+N+
Sbjct: 4 IDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTV 62
Query: 101 GYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKA 160
L+G+ PVVQ +P+ + + IV + + ++ EE+ +M+L K
Sbjct: 63 FDAKRLIGRKFSDPVVQSDMKHWPFKVVNGGGKPPIIVEYKGETKTFYPEEISSMVLTKM 122
Query: 161 REYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFK 220
+E A G+ + AVI VP YFN +RQ+ AG +AGL VL+++N+ TA A+ YG+ K
Sbjct: 123 KEIAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDK 182
Query: 221 RKDFNETNPVHVMFYDMGAWSTTVSIVS 248
+ +V+ +D+G + VS+++
Sbjct: 183 KGG----GERNVLIFDLGGGTFDVSLLT 206
|
This subfamily includes human HSPA1A (70-kDa heat shock protein 1A, also known as HSP72; HSPA1; HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat shock protein 1B, also known as HSPA1A; HSP70-2; HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like, also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The genes for these three HSPA1 proteins map in close proximity on the major histocompatibility complex (MHC) class III region on chromosome 6, 6p21.3. This subfamily also includes human HSPA8 (heat shock 70kDa protein 8, also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73; NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human HSPA2 (70-kDa heat shock protein 2, also known as HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human HSPA6 (also known as heat shock 70kDa protein 6 (HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3), human HSPA7 (heat shock 70kDa protein 7 , also known as HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces cerevisiae Stress-Seventy subfamily B/Ssb1p. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Associations of polymorphisms within the MHC-III HSP70 gene locus with longevity, systemic lupus erythematosus, Meniere's disease, noise-induced hearing loss, high-altitude pulmonary edema, and coronary heart disease, have been found. HSPA2 is involved in cancer cell survival, is required for maturation of male gametophytes, and is linked to male infertility. The induction of HSPA6 is a biomarker of cellular stress. HSPA8 participates in the folding and trafficking of client proteins to different subcellular compartments, and in the signal transduction and apoptosis process; it has been shown to protect cardiomyocytes against oxidative stress partly through an interaction with alpha-enolase. S. cerevisiae Ssb1p, is part of the ribosome-associated complex (RAC), it acts as a chaperone for nascent polypeptides, and is important for translation fidelity; Ssb1p is also a [PSI+] prion-curing factor. Length = 376 |
| >gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 2e-23
Identities = 70/222 (31%), Positives = 115/222 (51%), Gaps = 5/222 (2%)
Query: 37 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFP 96
+V+ +DLG +A+ G +E N+ S R TP ++ R G A+
Sbjct: 1 SVVGIDLGFLNCYIAVARSG-GIETIANEYSDRCTPACISLGSRTRAIGNAAKSQIVTNV 59
Query: 97 SNSYGYFLDLLGKSIDSPVVQLFKSRFPY-YDIVADEERGTIVFKTNDNELYHVEELVAM 155
N+ F L G+S D P+VQ + R PY + + G V + + +E++ M
Sbjct: 60 RNTIHGFKKLHGRSFDDPIVQTERIRLPYELQKMPNGSVGVKVRYLEEERPFAIEQVTGM 119
Query: 156 LLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALN 215
LL K +E + + + + + VI +P +F ER+S++ A ++AGL L+LMN+ TAVAL
Sbjct: 120 LLAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLNCLRLMNETTAVALA 179
Query: 216 YGIFKRKDFN--ETNPVHVMFYDMGAWSTTVSIVSYQVVKTK 255
YGI+K +D + P +V+F DMG + VS+ ++ K K
Sbjct: 180 YGIYK-QDLPALDEKPRNVVFIDMGHSAYQVSVCAFNKGKLK 220
|
Human HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28) is expressed ubiquitously and predominantly in the testis. It is required for normal spermatogenesis and plays a role in osmotolerance. HSPA4L belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 9e-23
Identities = 76/210 (36%), Positives = 116/210 (55%), Gaps = 13/210 (6%)
Query: 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFP 96
++ +DLG+ VA++ G P+ I N E R TP++VAF K GER G+ A+ P
Sbjct: 2 IIGIDLGTTNSCVAVMEGGEPVVIP-NAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNP 60
Query: 97 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAML 156
N+ +G+ D V R PY +V D G + K + E Y +E+ AM+
Sbjct: 61 ENTIYSIKRFMGRRFD--EVTEEAKRVPY-KVVGDG--GDVRVKVDGKE-YTPQEISAMI 114
Query: 157 LHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNY 216
L K ++ A G+ + EAVI VP YFN +RQ+ AG++AGL+VL+++N+ TA AL Y
Sbjct: 115 LQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAY 174
Query: 217 GIFKRKDFNETNPVHVMFYDMGAWSTTVSI 246
G+ K K +E ++ +D+G + VSI
Sbjct: 175 GLDKSKK-DEK----ILVFDLGGGTFDVSI 199
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved [Protein fate, Protein folding and stabilization]. Length = 595 |
| >gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4 | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-22
Identities = 71/222 (31%), Positives = 113/222 (50%), Gaps = 5/222 (2%)
Query: 37 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFP 96
+V+ +DLG + VA+ G +E N+ S R TP ++F R+ G A+
Sbjct: 1 SVVGIDLGFQSCYVAVARAG-GIETIANEYSDRCTPACISFGPKNRSIGAAAKSQVISNA 59
Query: 97 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVA--DEERGTIVFKTNDNELYHVEELVA 154
N+ F G++ P VQ K Y D+V G V + + E++ A
Sbjct: 60 KNTVQGFKRFHGRAFSDPFVQAEKPSLAY-DLVQLPTGSTGIKVMYMEEERNFTTEQVTA 118
Query: 155 MLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVAL 214
MLL K +E A + + + + V+ VP ++ ER+S++ A ++AGL L+LMN+ TAVAL
Sbjct: 119 MLLTKLKETAESALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRLMNETTAVAL 178
Query: 215 NYGIFKRK-DFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTK 255
YGI+K+ E P +V+F DMG + VS+ ++ K K
Sbjct: 179 AYGIYKQDLPALEEKPRNVVFVDMGHSAYQVSVCAFNKGKLK 220
|
Human HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1) responds to acidic pH stress, is involved in the radioadaptive response, is required for normal spermatogenesis and is overexpressed in hepatocellular carcinoma. It participates in a pathway along with NBS1 (Nijmegen breakage syndrome 1, also known as p85 or nibrin), heat shock transcription factor 4b (HDF4b), and HSPA14 (belonging to a different HSP70 subfamily) that induces tumor migration, invasion, and transformation. HSPA4 expression in sperm was increased in men with oligozoospermia, especially in those with varicocele. HSPA4 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 2e-21
Identities = 72/211 (34%), Positives = 111/211 (52%), Gaps = 13/211 (6%)
Query: 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFP 96
++ +DLG+ VA++ G P+ IA N E R TP++V F K GE G+ A+ P
Sbjct: 4 IVGIDLGTTNSVVAVMEGGKPVVIA-NAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNP 62
Query: 97 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKT-NDNELYHVEELVAM 155
N++ +G+ D + R PY I +E +G + K + EEL AM
Sbjct: 63 QNTFYNLKRFIGRRYDE--LDPESKRVPY-TIRRNE-QGNVRIKCPRLEREFAPEELSAM 118
Query: 156 LLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALN 215
+L K + AS G+ + AVI VP YFN +RQ+ AG +AGL+V +++N+ TA AL
Sbjct: 119 ILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVERILNEPTAAALA 178
Query: 216 YGIFKRKDFNETNPVHVMFYDMGAWSTTVSI 246
YG R ++T V+ +D+G + VS+
Sbjct: 179 YG-LDRSS-SQT----VLVFDLGGGTFDVSL 203
|
Length = 668 |
| >gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9, Escherichia coli DnaK, and similar proteins | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 6e-21
Identities = 73/221 (33%), Positives = 108/221 (48%), Gaps = 23/221 (10%)
Query: 37 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRF 95
AV+ +DLG+ VA++ P I N E R TP++VAF K GER G A+
Sbjct: 3 AVIGIDLGTTNSCVAVMEGKTPKVIE-NAEGARTTPSVVAFTKDGERLVGMPAKRQAVTN 61
Query: 96 PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVAD------EERGTIVFKTNDNELYHV 149
P N+ L+G+ D P VQ PY + A E G + Y
Sbjct: 62 PENTLYATKRLIGRRFDDPEVQKDIKNVPYKIVKASNGDAWVEAHG---------KKYSP 112
Query: 150 EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDY 209
++ A +L K +E A G+ + AVI VP YFN +RQ+ AG++AGL VL+++N+
Sbjct: 113 SQIGAFVLMKMKETAEAYLGKPVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEP 172
Query: 210 TAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQ 250
TA AL YG ++ + + YD+G + +SI+ Q
Sbjct: 173 TAAALAYG------LDKKDDKVIAVYDLGGGTFDISILEIQ 207
|
This subgroup includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, and Saccharomyces cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. HSPA9 is involved in multiple processses including mitochondrial import, antigen processing, control of cellular proliferation and differentiation, and regulation of glucose responses. During glucose deprivation-induced cellular stress, HSPA9 plays an important role in the suppression of apoptosis by inhibiting a conformational change in Bax that allow the release of cytochrome c. DnaK modulates the heat shock response in Escherichia coli. It protects E. coli from protein carbonylation, an irreversible oxidative modification that increases during organism aging and bacterial growth arrest. Under severe thermal stress, it functions as part of a bi-chaperone system: the DnaK system and the ring-forming AAA+ chaperone ClpB (Hsp104) system, to promote cell survival. DnaK has also been shown to cooperate with GroEL and the ribosome-associated Escherichia coli Trigger Factor in the proper folding of cytosolic proteins. S. cerevisiae Ssc1p is the major HSP70 chaperone of the mitochondrial matrix, promoting translocation of proteins from the cytosol, across the inner membrane, to the matrix, and their subsequent folding. Ssc1p interacts with Tim44, a peripheral inner membrane protein associated with the TIM23 protein translocase. It is also a subunit of the endoSceI site-specific endoDNase and is required for full endoSceI activity. Ssc1p plays roles in the import of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Ssc1 also participates in translational regulation of cytochrome c oxidase (COX) biogenesis by interacting with Mss51 and Mss51-containing complexes. Length = 377 |
| >gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and similar proteins | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 4e-20
Identities = 71/207 (34%), Positives = 105/207 (50%), Gaps = 13/207 (6%)
Query: 41 VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSY 100
+DLG+ VA V G ++I ++ + P++V + G + G DA + P N+
Sbjct: 5 IDLGTTNSLVASVLSG-KVKILPDENGRVLLPSVVHYGDGGISVGHDALKLAISDPKNTI 63
Query: 101 GYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKA 160
L+GKSI+ K FPY I+ + G I+F T + VE + A +L
Sbjct: 64 SSVKRLMGKSIEDI-----KKSFPYLPILEGKNGGIILFHTQQGTVTPVE-VSAEILKAL 117
Query: 161 REYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFK 220
+E A S G I AVI VP YF+ +RQ+ A LAGL VL+L+N+ TA AL YG+ K
Sbjct: 118 KERAEKSLGGEIKGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAALAYGLDK 177
Query: 221 RKDFNETNPVHVMFYDMGAWSTTVSIV 247
+K+ YD+G + VSI+
Sbjct: 178 KKE------GIYAVYDLGGGTFDVSIL 198
|
Escherichia coli HscA (heat shock cognate protein A, also called Hsc66), belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HscA's partner J-domain protein is HscB; it does not appear to require a NEF, and has been shown to be induced by cold-shock. The HscA-HscB chaperone/co-chaperone pair is involved in [Fe-S] cluster assembly. Length = 355 |
| >gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 2e-19
Identities = 67/207 (32%), Positives = 100/207 (48%), Gaps = 14/207 (6%)
Query: 41 VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFPSNS 99
+DLG+ VA V GVP E+ + E + P++V + K G G++A P N+
Sbjct: 4 IDLGTTNSLVASVRSGVP-EVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNT 62
Query: 100 YGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHK 159
L+G+SI+ S PY V D + +T + VE + A +L K
Sbjct: 63 ISSVKRLMGRSIEDIKTF---SILPY-RFV-DGPGEMVRLRTVQGTVTPVE-VSAEILKK 116
Query: 160 AREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIF 219
++ A S G + AVI VP YF+ +RQ+ A LAGL VL+L+N+ TA A+ YG+
Sbjct: 117 LKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLD 176
Query: 220 KRKDFNETNPVHVMFYDMGAWSTTVSI 246
K + YD+G + VSI
Sbjct: 177 KASE------GIYAVYDLGGGTFDVSI 197
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK [Protein fate, Protein folding and stabilization]. Length = 599 |
| >gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Score = 93.7 bits (233), Expect = 2e-19
Identities = 67/211 (31%), Positives = 107/211 (50%), Gaps = 11/211 (5%)
Query: 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFP 96
++ +DLG+ VAI+ P I N E R TP++VAF + G+R G A+ P
Sbjct: 43 IVGIDLGTTNSCVAIMEGSQPKVIE-NSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNP 101
Query: 97 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAML 156
N+ L+G+ D + + PY + A I + Y ++ A +
Sbjct: 102 ENTVFATKRLIGRRYDEDATKKEQKILPYKIVRASNGDAWI---EAQGKKYSPSQIGAFV 158
Query: 157 LHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNY 216
L K +E A G+ + +AVI VP YFN +RQ+ AG++AGL VL+++N+ TA AL +
Sbjct: 159 LEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAF 218
Query: 217 GIFKRKDFNETNPVHVMFYDMGAWSTTVSIV 247
G+ K N+ + V YD+G + +SI+
Sbjct: 219 GMDK----NDGKTIAV--YDLGGGTFDISIL 243
|
Length = 663 |
| >gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13 and similar proteins | Back alignment and domain information |
|---|
Score = 91.8 bits (228), Expect = 2e-19
Identities = 62/216 (28%), Positives = 107/216 (49%), Gaps = 9/216 (4%)
Query: 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKT-PTLVAFHKGERTFGEDAQIIGTRFP 96
++ +DLG+ + V + G + E+ RK+ P++VAF G G A P
Sbjct: 22 IIGIDLGTTYSSVGVYQAGTGETDIIPDENGRKSIPSVVAFTPGTVLVGYKAVEQAEHNP 81
Query: 97 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHV--EELVA 154
N+ +GK ++ R+ + + + G F NE V EE+ +
Sbjct: 82 QNTIYDAKRFIGKIFTKEELEFESDRYRF-KVKINSRNGAFFFSVLTNETKTVTPEEIGS 140
Query: 155 MLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVAL 214
L+ K R+ A G + +AVI VP F++ +R + +KA LAGL+VL+++N+ TA AL
Sbjct: 141 RLILKLRKMAEKYLGTPVGKAVISVPAEFDEKQRNATVKAANLAGLEVLRVINEPTAAAL 200
Query: 215 NYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQ 250
YG+ K++D +V+ D+G + VS+++ Q
Sbjct: 201 AYGLHKKQDV-----FNVLVVDLGGGTLDVSLLNKQ 231
|
Human HSPA13 (also called 70-kDa heat shock protein 13, STCH, "stress 70 protein chaperone, microsome-associated, 60kD", "stress 70 protein chaperone, microsome-associated, 60kDa"; the gene encoding HSPA13 maps to 21q11.1) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). STCH contains an NBD but lacks an SBD. STCH may function to regulate cell proliferation and survival, and modulate the TRAIL-mediated cell death pathway. The HSPA13 gene is a candidate stomach cancer susceptibility gene; a mutation in the NBD coding region of HSPA13 has been identified in stomach cancer cells. The NBD of HSPA13 interacts with the ubiquitin-like proteins Chap1 and Chap2, implicating HSPA13 in regulating cell cycle and cell death events. HSPA13 is induced by the Ca2+ ionophore A23187. Length = 417 |
| >gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Score = 92.6 bits (230), Expect = 5e-19
Identities = 68/211 (32%), Positives = 114/211 (54%), Gaps = 11/211 (5%)
Query: 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFP 96
V+ +DLG+ VA + G P I N E +R TP++VA+ K G+R G+ A+ P
Sbjct: 41 VVGIDLGTTNSAVAAMEGGKPT-IVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNP 99
Query: 97 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAML 156
N++ +G+ + V + +S+ Y +V DE + + + EE+ A +
Sbjct: 100 ENTFFSVKRFIGRKMSE-VDE--ESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQV 156
Query: 157 LHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNY 216
L K + AS + +AVI VP YFN +R + AG +AGL+VL+++N+ TA +L Y
Sbjct: 157 LRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAY 216
Query: 217 GIFKRKDFNETNPVHVMFYDMGAWSTTVSIV 247
G F++K NET ++ +D+G + VS++
Sbjct: 217 G-FEKKS-NET----ILVFDLGGGTFDVSVL 241
|
Length = 673 |
| >gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 91.7 bits (229), Expect = 8e-19
Identities = 70/214 (32%), Positives = 104/214 (48%), Gaps = 45/214 (21%)
Query: 50 VAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQ----------------IIG 92
VA++ G P I N E R TP++VAF K GER G+ A+ ++G
Sbjct: 16 VAVMEGGEPKVIE-NAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMG 74
Query: 93 TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEEL 152
R VQ PY + AD G + + + Y +E+
Sbjct: 75 RRDE------------------EVQKDIKLVPYKIVKADN--GDAWVEIDGKK-YTPQEI 113
Query: 153 VAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAV 212
AM+L K ++ A G+ + EAVI VP YFN +RQ+ AG++AGL+VL+++N+ TA
Sbjct: 114 SAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAA 173
Query: 213 ALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSI 246
AL YG+ K+ D E ++ YD+G + VSI
Sbjct: 174 ALAYGLDKKGD--EK----ILVYDLGGGTFDVSI 201
|
Length = 627 |
| >gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 90.7 bits (225), Expect = 1e-18
Identities = 132/592 (22%), Positives = 234/592 (39%), Gaps = 107/592 (18%)
Query: 277 FEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQ 336
F+ IAV +D G+ +AI + +++ + + K PT + F T G +
Sbjct: 14 FKQERQIAV-GIDFGTTNSLIAI-ATNRKVKVIKSIDDKELIPTTIDFTSNNFTIGNNKG 71
Query: 337 IIGTRFPSNSYGYFLDLLGKS----IDSPVV-QLFKSRFPYYDIVADEERGTIVFKTNDN 391
+ + L GK+ +++P + L K Y D+ + E + K
Sbjct: 72 LRSIK----------RLFGKTLKEILNTPALFSLVKD---YLDVNSSELKLNFANKQ--- 115
Query: 392 ELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQ 451
+ E+ A + + A I +AVI VP +FN R ++ A ++AG +VL+
Sbjct: 116 --LRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLR 173
Query: 452 LMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHP 511
L+ + TA A YG+ K N+ V YD+G + VSI + +E F
Sbjct: 174 LIAEPTAAAYAYGLNK----NQKGCYLV--YDLGGGTFDVSI-----LNIQEGIF----- 217
Query: 512 QVSVLGVGYDRTLGGLEMQIRLRDFLGKKF--NEMKKTTKDVFENPRAVAKLFKEAGRLK 569
V+ D LGG ++ + + +L KF T + +AK KE L
Sbjct: 218 --QVIATNGDNMLGGNDIDVVITQYLCNKFDLPNSIDTLQ--------LAKKAKET--LT 265
Query: 570 NVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVI 629
S NN+ + + + E L L +R ++ L+ + P I
Sbjct: 266 YKDSFNND--------------NISINKQTLEQLILPLVERTINIAQECLEQAGNPN--I 309
Query: 630 SQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITK 689
VILVG TR+P +++++ K V++ +++ D+A GA +A +L I
Sbjct: 310 DGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENLIAPHTNSLLI-- 367
Query: 690 DIVLYPIQVEFERESESGDTKIIKRMLFGPSNT-YPQKKILTFNKYVGD---FNFNVSYA 745
D+V + +E G + I NT P + F Y + F++
Sbjct: 368 DVVPLSLGMEL----YGGIVEKII-----MRNTPIPISVVKEFTTYADNQTGIQFHI--- 415
Query: 746 SEIEHLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSL-- 803
L E+ + +++F++ G+ A S + FA+D GILS+
Sbjct: 416 -----LQGEREMAADCRSLARFELKGLPPM-------KAGSIRAEVTFAIDADGILSVSA 463
Query: 804 ----VNIELVVEKQEAAESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGN 851
N +E + +++ L + + +K D + + EAV E
Sbjct: 464 YEKISNTSHAIEVKPNHGIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAE 515
|
Length = 595 |
| >gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of Saccharmomyces cerevisiae Ssz1pp and similar proteins | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 3e-18
Identities = 59/219 (26%), Positives = 104/219 (47%), Gaps = 14/219 (6%)
Query: 37 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDA--QIIGTR 94
V+ ++ G+ + +A ++ G IA N++ +R+ P+ +++H + G A Q+I R
Sbjct: 1 TVIGINFGNTYSSIACINQGKADVIA-NEDGERQIPSAISYHGEQEYHGNQAKAQLI--R 57
Query: 95 FPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVAD-----EERGTIVFKTNDNELYHV 149
N+ F DLLGK V + P V D +E+ V K + V
Sbjct: 58 NAKNTITNFRDLLGKPFSEIDVSAAAAAAPVPVAVIDVGGTVQEKEEPVPKE---TILTV 114
Query: 150 EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDY 209
E+ L + +E A G+ + AV+ VP +F+ + ++++KA E AGL VLQL+ +
Sbjct: 115 HEVTVRFLRRLKEAAEDFLGKKVAGAVLSVPTWFSDEQTEALVKAAEAAGLPVLQLIPEP 174
Query: 210 TAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248
A L Y + + + V+ D G T VS+++
Sbjct: 175 AAALLAYDAGEPTEDEALDRN-VVVADFGGTRTDVSVIA 212
|
Saccharomyces cerevisiae Ssz1p (also known as /Pdr13p/YHR064C) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but rather, function as NEFs for their Hsp70 partners, while other family members function as both chaperones and NEFs. Ssz1 does not function as a chaperone; it facilitates the interaction between the HSP70 Ssb protein and its partner J-domain protein Zuo1 (also known as zuotin) on the ribosome. Ssz1 is found in a stable heterodimer (called RAC, ribosome associated complex) with Zuo1. Zuo1 can only stimulate the ATPase activity of Ssb, when it is in complex with Ssz1. Ssz1 binds ATP but neither nucleotide-binding, hydrolysis, or its SBD, is needed for its in vivo function. Length = 386 |
| >gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70 | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 4e-18
Identities = 67/210 (31%), Positives = 113/210 (53%), Gaps = 11/210 (5%)
Query: 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFP 96
V+ +DLG+ VA++ G P I N E R TP++VA+ K G+ G+ A+ P
Sbjct: 4 VVGIDLGTTNSVVAVMEGGKPTVIP-NAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINP 62
Query: 97 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAML 156
N++ +G+ + + +++ Y + D + N+ + EE+ A +
Sbjct: 63 ENTFYSVKRFIGRKFSE-ISE--EAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQV 119
Query: 157 LHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNY 216
L K E AS G+ + +AVI VP YFN +RQ+ AG++AGL+VL+++N+ TA +L Y
Sbjct: 120 LRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLAY 179
Query: 217 GIFKRKDFNETNPVHVMFYDMGAWSTTVSI 246
G+ K+ NET ++ +D+G + VSI
Sbjct: 180 GLDKKN--NET----ILVFDLGGGTFDVSI 203
|
Length = 621 |
| >gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 87.9 bits (218), Expect = 1e-17
Identities = 66/210 (31%), Positives = 112/210 (53%), Gaps = 12/210 (5%)
Query: 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFP 96
V+ +DLG+ VA++ G P+ I N E R TP++V F K G+R G+ A+
Sbjct: 4 VIGIDLGTTNSCVAVLEGGKPIVIP-NSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNA 62
Query: 97 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAML 156
N+ +G+ D + +SR PY + ++ + + + Y +E+ AM+
Sbjct: 63 ENTVYSIKRFIGRRWDDTEEE--RSRVPYTCVKGRDDTVNVQIRGRN---YTPQEISAMI 117
Query: 157 LHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNY 216
L K ++ A G+ + +AVI VP YF +RQ+ AG +AGL+VL+++N+ TA AL Y
Sbjct: 118 LQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALAY 177
Query: 217 GIFKRKDFNETNPVHVMFYDMGAWSTTVSI 246
G+ K +D + ++ +D+G + VSI
Sbjct: 178 GLDK-QDQEQ----LILVFDLGGGTFDVSI 202
|
Length = 653 |
| >gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Score = 87.4 bits (216), Expect = 2e-17
Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 9/210 (4%)
Query: 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 97
V+ VDLG+ + VA + + N E R TP++VAF E+ G A+ P
Sbjct: 29 VIGVDLGTTYSCVATMDGDKA-RVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQ 87
Query: 98 NSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLL 157
+++ L+G+ + +Q PY + A G + + + Y ++ A +L
Sbjct: 88 STFYAVKRLIGRRFEDEHIQKDIKNVPYKIVRAGN--GDAWVQDGNGKQYSPSQIGAFVL 145
Query: 158 HKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYG 217
K +E A G ++ AV+ P YFN +RQ+ AG +AGL V++++N+ TA AL YG
Sbjct: 146 EKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALAYG 205
Query: 218 IFKRKDFNETNPVHVMFYDMGAWSTTVSIV 247
+ K KD + YD+G + +S++
Sbjct: 206 MDKTKD------SLIAVYDLGGGTFDISVL 229
|
Length = 657 |
| >gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14 and similar proteins | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 5e-17
Identities = 56/204 (27%), Positives = 96/204 (47%), Gaps = 8/204 (3%)
Query: 60 EIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLF 119
++ N R TP +VAF E G A+ R +N+ +LG+S P Q
Sbjct: 23 DVVANDAGDRVTPAVVAFTDTEVIVGLAAKQGRIRNAANTIVKNKQILGRSYSDPFKQKE 82
Query: 120 KSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIV 179
K+ I D E +F + +E+ ++ K +E A + G + VI V
Sbjct: 83 KTESSCKIIEKDGEPKYEIFTEEKTKHVSPKEVAKLIFKKMKEIAQSALGSDSKDVVITV 142
Query: 180 PGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGA 239
P YF++ ++ ++ +A E AG VL+++++ +A AL YGI + + T +V+ Y +G
Sbjct: 143 PVYFSEKQKLALREAAEEAGFNVLRIIHEPSAAALAYGIGQD---SPTGKSYVLVYRLGG 199
Query: 240 WSTTVSIVS-----YQVVKTKERG 258
ST V+I+ Y+V+ T
Sbjct: 200 TSTDVTILRVNSGMYRVLATSTDD 223
|
Human HSPA14 (also known as 70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene encoding HSPA14 maps to 10p13), is ribosome-associated and belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HSPA14 interacts with the J-protein MPP11 to form the mammalian ribosome-associated complex (mRAC). HSPA14 participates in a pathway along with Nijmegen breakage syndrome 1 (NBS1, also known as p85 or nibrin), heat shock transcription factor 4b (HSF4b), and HSPA4 (belonging to a different subfamily), that induces tumor migration, invasion, and transformation. HSPA14 is a potent T helper cell (Th1) polarizing adjuvant that contributes to antitumor immune responses. Length = 375 |
| >gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia coli HscC and similar proteins | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 1e-15
Identities = 41/100 (41%), Positives = 59/100 (59%), Gaps = 5/100 (5%)
Query: 150 EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDY 209
EEL +++L +E A G+ + EAVI VP YFN +R++ +AGELAGLKV +L+N+
Sbjct: 85 EELSSLVLRSLKEDAEAYLGEPVTEAVISVPAYFNDEQRKATKRAGELAGLKVERLINEP 144
Query: 210 TAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSY 249
TA AL YG KD V +D+G + VS++
Sbjct: 145 TAAALAYG-LHDKDEETKFLV----FDLGGGTFDVSVLEL 179
|
This subfamily includes Escherichia coli HscC (also called heat shock cognate protein C, Hsc62, or YbeW) and the the putative DnaK-like protein Escherichia coli ECs0689. It belongs to the heat shock protein 70 (Hsp70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, Hsp70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Two genes in the vicinity of the HscC gene code for potential cochaperones: J-domain containing proteins, DjlB/YbeS and DjlC/YbeV. HscC and its co-chaperone partners may play a role in the SOS DNA damage response. HscC does not appear to require a NEF. Length = 339 |
| >gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 6e-15
Identities = 64/217 (29%), Positives = 107/217 (49%), Gaps = 17/217 (7%)
Query: 32 HSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQII 91
H +AV +DLG+ VA V G E+ +++ + P++V + + G +A+
Sbjct: 16 HQRRLAV-GIDLGTTNSLVATVRSGQA-EVLPDEQGRVLLPSVVRYLEDGIEVGYEARAN 73
Query: 92 GTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPY--YDIVADEERGTIVFKTNDNELYHV 149
+ P N+ +G+S+ + R+P+ Y VA E G + +T V
Sbjct: 74 AAQDPKNTISSVKRFMGRSLADI-----QQRYPHLPYQFVASEN-GMPLIRTAQGLKSPV 127
Query: 150 EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDY 209
E + A +L R+ A + G ++ AVI VP YF+ +RQ+ A LAGL VL+L+N+
Sbjct: 128 E-VSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEP 186
Query: 210 TAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSI 246
TA A+ YG+ D + V + YD+G + +SI
Sbjct: 187 TAAAIAYGL----D-SGQEGVIAV-YDLGGGTFDISI 217
|
Length = 616 |
| >gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 4e-08
Identities = 59/235 (25%), Positives = 103/235 (43%), Gaps = 36/235 (15%)
Query: 30 FEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQ 89
F+ IAV +D G+ +AI + +++ + + K PT + F T G +
Sbjct: 14 FKQERQIAV-GIDFGTTNSLIAI-ATNRKVKVIKSIDDKELIPTTIDFTSNNFTIGNNKG 71
Query: 90 IIGTRFPSNSYGYFLDLLGKS----IDSPVV-QLFKSRFPYYDIVADEERGTIVFKTNDN 144
+ + L GK+ +++P + L K Y D+ + E + K
Sbjct: 72 LRSIK----------RLFGKTLKEILNTPALFSLVKD---YLDVNSSELKLNFANKQ--- 115
Query: 145 ELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQ 204
+ E+ A + + A I +AVI VP +FN R ++ A ++AG +VL+
Sbjct: 116 --LRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLR 173
Query: 205 LMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS-----YQVVKT 254
L+ + TA A YG+ K N+ V YD+G + VSI++ +QV+ T
Sbjct: 174 LIAEPTAAAYAYGLNK----NQKGCYLV--YDLGGGTFDVSILNIQEGIFQVIAT 222
|
Length = 595 |
| >gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 3e-05
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 561 LFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALK 620
L + K LS+ +E +I+ E+ + VTRAEFE +R+ V++AL
Sbjct: 303 LARAVEAAKIALSSQDET--RIDLDFVEVGLEAPVTRAEFEGAIAPDLERIEAAVDEALA 360
Query: 621 SSAVPMDVISQVILVGAGTRVPKVQEKITKVVG 653
+ V D I +V L G + VP V++
Sbjct: 361 QAGVSPDAIDRVFLTGGSSLVPAVRQAFAARFP 393
|
This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs. Length = 415 |
| >gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 6e-05
Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 13/129 (10%)
Query: 884 ADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLES 943
DK K I+AS S L++ ++E+ + + + + + +A N E
Sbjct: 483 KDKGTGKE-QKITITAS------SGLSDDEIERMVKDAEEYAAEDKKRKERIEAKNEAEE 535
Query: 944 LLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLV 1003
++ + L+ EE + ++ K ++E WL+E+ + + +E K E+ +V
Sbjct: 536 YVYSLEKSLK-EEGDKLPEADKKK-----VEEAIEWLKEELEGEDKEEIEAKTEELQKVV 589
Query: 1004 VPIWERHRE 1012
PI ER +
Sbjct: 590 QPIGERMYQ 598
|
Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region. Length = 598 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1212 | |||
| KOG0104|consensus | 902 | 100.0 | ||
| KOG0100|consensus | 663 | 100.0 | ||
| KOG0103|consensus | 727 | 100.0 | ||
| PTZ00009 | 653 | heat shock 70 kDa protein; Provisional | 100.0 | |
| PRK13410 | 668 | molecular chaperone DnaK; Provisional | 100.0 | |
| PTZ00400 | 663 | DnaK-type molecular chaperone; Provisional | 100.0 | |
| PRK13411 | 653 | molecular chaperone DnaK; Provisional | 100.0 | |
| PRK00290 | 627 | dnaK molecular chaperone DnaK; Provisional | 100.0 | |
| PLN03184 | 673 | chloroplast Hsp70; Provisional | 100.0 | |
| PTZ00186 | 657 | heat shock 70 kDa precursor protein; Provisional | 100.0 | |
| TIGR02350 | 595 | prok_dnaK chaperone protein DnaK. Members of this | 100.0 | |
| CHL00094 | 621 | dnaK heat shock protein 70 | 100.0 | |
| TIGR01991 | 599 | HscA Fe-S protein assembly chaperone HscA. The Hea | 100.0 | |
| KOG0101|consensus | 620 | 100.0 | ||
| PF00012 | 602 | HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho | 100.0 | |
| PRK05183 | 616 | hscA chaperone protein HscA; Provisional | 100.0 | |
| PRK01433 | 595 | hscA chaperone protein HscA; Provisional | 100.0 | |
| KOG0102|consensus | 640 | 100.0 | ||
| COG0443 | 579 | DnaK Molecular chaperone [Posttranslational modifi | 100.0 | |
| PRK11678 | 450 | putative chaperone; Provisional | 100.0 | |
| KOG0100|consensus | 663 | 100.0 | ||
| PRK13928 | 336 | rod shape-determining protein Mbl; Provisional | 100.0 | |
| PRK13929 | 335 | rod-share determining protein MreBH; Provisional | 100.0 | |
| PTZ00186 | 657 | heat shock 70 kDa precursor protein; Provisional | 100.0 | |
| PTZ00400 | 663 | DnaK-type molecular chaperone; Provisional | 100.0 | |
| PTZ00009 | 653 | heat shock 70 kDa protein; Provisional | 100.0 | |
| PRK13410 | 668 | molecular chaperone DnaK; Provisional | 100.0 | |
| PRK13411 | 653 | molecular chaperone DnaK; Provisional | 100.0 | |
| PRK13927 | 334 | rod shape-determining protein MreB; Provisional | 100.0 | |
| PRK00290 | 627 | dnaK molecular chaperone DnaK; Provisional | 100.0 | |
| TIGR00904 | 333 | mreB cell shape determining protein, MreB/Mrl fami | 100.0 | |
| PRK05183 | 616 | hscA chaperone protein HscA; Provisional | 100.0 | |
| TIGR01991 | 599 | HscA Fe-S protein assembly chaperone HscA. The Hea | 100.0 | |
| PLN03184 | 673 | chloroplast Hsp70; Provisional | 100.0 | |
| TIGR02350 | 595 | prok_dnaK chaperone protein DnaK. Members of this | 100.0 | |
| KOG0102|consensus | 640 | 100.0 | ||
| PRK13930 | 335 | rod shape-determining protein MreB; Provisional | 100.0 | |
| PF00012 | 602 | HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho | 100.0 | |
| COG0443 | 579 | DnaK Molecular chaperone [Posttranslational modifi | 100.0 | |
| CHL00094 | 621 | dnaK heat shock protein 70 | 100.0 | |
| KOG0104|consensus | 902 | 100.0 | ||
| PRK01433 | 595 | hscA chaperone protein HscA; Provisional | 100.0 | |
| KOG0101|consensus | 620 | 99.98 | ||
| KOG0103|consensus | 727 | 99.97 | ||
| PRK11678 | 450 | putative chaperone; Provisional | 99.96 | |
| PF06723 | 326 | MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba | 99.95 | |
| COG1077 | 342 | MreB Actin-like ATPase involved in cell morphogene | 99.94 | |
| TIGR02529 | 239 | EutJ ethanolamine utilization protein EutJ family | 99.94 | |
| PRK15080 | 267 | ethanolamine utilization protein EutJ; Provisional | 99.93 | |
| TIGR01174 | 371 | ftsA cell division protein FtsA. This bacterial ce | 99.86 | |
| PRK09472 | 420 | ftsA cell division protein FtsA; Reviewed | 99.82 | |
| PRK13929 | 335 | rod-share determining protein MreBH; Provisional | 99.78 | |
| PRK13928 | 336 | rod shape-determining protein Mbl; Provisional | 99.73 | |
| TIGR00904 | 333 | mreB cell shape determining protein, MreB/Mrl fami | 99.71 | |
| PRK13927 | 334 | rod shape-determining protein MreB; Provisional | 99.66 | |
| PRK13930 | 335 | rod shape-determining protein MreB; Provisional | 99.66 | |
| COG1077 | 342 | MreB Actin-like ATPase involved in cell morphogene | 99.62 | |
| COG0849 | 418 | ftsA Cell division ATPase FtsA [Cell division and | 99.61 | |
| PF06723 | 326 | MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba | 99.61 | |
| cd00012 | 371 | ACTIN Actin; An ubiquitous protein involved in the | 99.52 | |
| TIGR02529 | 239 | EutJ ethanolamine utilization protein EutJ family | 99.47 | |
| smart00268 | 373 | ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki | 99.43 | |
| COG4820 | 277 | EutJ Ethanolamine utilization protein, possible ch | 99.39 | |
| PRK13917 | 344 | plasmid segregation protein ParM; Provisional | 99.35 | |
| PTZ00280 | 414 | Actin-related protein 3; Provisional | 99.21 | |
| PRK15080 | 267 | ethanolamine utilization protein EutJ; Provisional | 99.18 | |
| TIGR03739 | 320 | PRTRC_D PRTRC system protein D. A novel genetic sy | 99.07 | |
| PF00022 | 393 | Actin: Actin; InterPro: IPR004000 Actin [, ] is a | 99.05 | |
| TIGR01175 | 348 | pilM type IV pilus assembly protein PilM. This pro | 98.96 | |
| PTZ00281 | 376 | actin; Provisional | 98.94 | |
| PF11104 | 340 | PilM_2: Type IV pilus assembly protein PilM;; PDB: | 98.93 | |
| PTZ00004 | 378 | actin-2; Provisional | 98.89 | |
| PTZ00466 | 380 | actin-like protein; Provisional | 98.87 | |
| PTZ00452 | 375 | actin; Provisional | 98.86 | |
| COG4820 | 277 | EutJ Ethanolamine utilization protein, possible ch | 98.64 | |
| PRK09472 | 420 | ftsA cell division protein FtsA; Reviewed | 98.58 | |
| TIGR01174 | 371 | ftsA cell division protein FtsA. This bacterial ce | 98.45 | |
| PF06406 | 318 | StbA: StbA protein; InterPro: IPR009440 This entry | 98.45 | |
| cd00012 | 371 | ACTIN Actin; An ubiquitous protein involved in the | 98.43 | |
| smart00268 | 373 | ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki | 98.43 | |
| COG4972 | 354 | PilM Tfp pilus assembly protein, ATPase PilM [Cell | 98.36 | |
| TIGR00241 | 248 | CoA_E_activ CoA-substrate-specific enzyme activase | 98.35 | |
| COG0849 | 418 | ftsA Cell division ATPase FtsA [Cell division and | 98.28 | |
| COG5277 | 444 | Actin and related proteins [Cytoskeleton] | 98.23 | |
| KOG0679|consensus | 426 | 98.17 | ||
| PRK13917 | 344 | plasmid segregation protein ParM; Provisional | 97.84 | |
| TIGR03739 | 320 | PRTRC_D PRTRC system protein D. A novel genetic sy | 97.81 | |
| PTZ00280 | 414 | Actin-related protein 3; Provisional | 97.76 | |
| PF07520 | 1002 | SrfB: Virulence factor SrfB; InterPro: IPR009216 T | 97.73 | |
| PRK10719 | 475 | eutA reactivating factor for ethanolamine ammonia | 97.69 | |
| TIGR03192 | 293 | benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s | 97.57 | |
| KOG0676|consensus | 372 | 97.52 | ||
| PF00022 | 393 | Actin: Actin; InterPro: IPR004000 Actin [, ] is a | 97.49 | |
| PTZ00004 | 378 | actin-2; Provisional | 97.45 | |
| TIGR03286 | 404 | methan_mark_15 putative methanogenesis marker prot | 97.39 | |
| PRK10719 | 475 | eutA reactivating factor for ethanolamine ammonia | 97.35 | |
| COG1924 | 396 | Activator of 2-hydroxyglutaryl-CoA dehydratase (HS | 97.34 | |
| PRK13317 | 277 | pantothenate kinase; Provisional | 97.32 | |
| PTZ00452 | 375 | actin; Provisional | 97.28 | |
| PTZ00281 | 376 | actin; Provisional | 97.26 | |
| KOG0679|consensus | 426 | 97.22 | ||
| PF08841 | 332 | DDR: Diol dehydratase reactivase ATPase-like domai | 97.16 | |
| PTZ00466 | 380 | actin-like protein; Provisional | 97.12 | |
| PF06406 | 318 | StbA: StbA protein; InterPro: IPR009440 This entry | 97.06 | |
| COG4457 | 1014 | SrfB Uncharacterized protein conserved in bacteria | 96.8 | |
| KOG0797|consensus | 618 | 96.72 | ||
| COG1069 | 544 | AraB Ribulose kinase [Energy production and conver | 96.58 | |
| PF02782 | 198 | FGGY_C: FGGY family of carbohydrate kinases, C-ter | 95.95 | |
| PF06277 | 473 | EutA: Ethanolamine utilisation protein EutA; Inter | 95.8 | |
| TIGR01175 | 348 | pilM type IV pilus assembly protein PilM. This pro | 95.64 | |
| PF07520 | 1002 | SrfB: Virulence factor SrfB; InterPro: IPR009216 T | 95.01 | |
| PRK15027 | 484 | xylulokinase; Provisional | 94.88 | |
| TIGR02259 | 432 | benz_CoA_red_A benzoyl-CoA reductase, bcr type, su | 94.66 | |
| PLN02669 | 556 | xylulokinase | 94.55 | |
| TIGR01315 | 541 | 5C_CHO_kinase FGGY-family pentulose kinase. This m | 94.54 | |
| PF14574 | 412 | DUF4445: Domain of unknown function (DUF4445); PDB | 94.29 | |
| PF06277 | 473 | EutA: Ethanolamine utilisation protein EutA; Inter | 93.94 | |
| COG5277 | 444 | Actin and related proteins [Cytoskeleton] | 93.92 | |
| PRK00047 | 498 | glpK glycerol kinase; Provisional | 93.56 | |
| TIGR01312 | 481 | XylB D-xylulose kinase. D-xylulose kinase (XylB) g | 93.52 | |
| PF13941 | 457 | MutL: MutL protein | 93.46 | |
| TIGR01311 | 493 | glycerol_kin glycerol kinase. This model describes | 93.45 | |
| PF01968 | 290 | Hydantoinase_A: Hydantoinase/oxoprolinase; InterPr | 93.22 | |
| TIGR01234 | 536 | L-ribulokinase L-ribulokinase. This enzyme catalyz | 93.05 | |
| PRK04123 | 548 | ribulokinase; Provisional | 92.95 | |
| TIGR02628 | 465 | fuculo_kin_coli L-fuculokinase. Members of this fa | 92.88 | |
| PTZ00294 | 504 | glycerol kinase-like protein; Provisional | 92.88 | |
| PRK10331 | 470 | L-fuculokinase; Provisional | 92.54 | |
| PLN02295 | 512 | glycerol kinase | 92.4 | |
| TIGR02627 | 454 | rhamnulo_kin rhamnulokinase. This model describes | 92.28 | |
| TIGR01314 | 505 | gntK_FGGY gluconate kinase, FGGY type. Gluconate i | 92.06 | |
| KOG2517|consensus | 516 | 91.97 | ||
| KOG2531|consensus | 545 | 91.92 | ||
| PF14450 | 120 | FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B | 91.69 | |
| TIGR02261 | 262 | benz_CoA_red_D benzoyl-CoA reductase, bcr type, su | 91.59 | |
| PRK10640 | 471 | rhaB rhamnulokinase; Provisional | 91.4 | |
| TIGR00555 | 279 | panK_eukar pantothenate kinase, eukaryotic/staphyl | 90.96 | |
| PRK10939 | 520 | autoinducer-2 (AI-2) kinase; Provisional | 90.83 | |
| COG4457 | 1014 | SrfB Uncharacterized protein conserved in bacteria | 90.83 | |
| COG0145 | 674 | HyuA N-methylhydantoinase A/acetone carboxylase, b | 90.52 | |
| KOG0677|consensus | 389 | 90.25 | ||
| smart00842 | 187 | FtsA Cell division protein FtsA. FtsA is essential | 89.91 | |
| COG0248 | 492 | GppA Exopolyphosphatase [Nucleotide transport and | 89.47 | |
| COG4819 | 473 | EutA Ethanolamine utilization protein, possible ch | 89.28 | |
| COG1070 | 502 | XylB Sugar (pentulose and hexulose) kinases [Carbo | 88.84 | |
| PRK10854 | 513 | exopolyphosphatase; Provisional | 88.74 | |
| COG4972 | 354 | PilM Tfp pilus assembly protein, ATPase PilM [Cell | 88.5 | |
| KOG0797|consensus | 618 | 88.4 | ||
| KOG0680|consensus | 400 | 88.19 | ||
| smart00842 | 187 | FtsA Cell division protein FtsA. FtsA is essential | 88.03 | |
| COG1548 | 330 | Predicted transcriptional regulator/sugar kinase [ | 87.81 | |
| PF13941 | 457 | MutL: MutL protein | 87.47 | |
| PF14450 | 120 | FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B | 87.01 | |
| PF07318 | 343 | DUF1464: Protein of unknown function (DUF1464); In | 84.8 | |
| KOG0676|consensus | 372 | 84.33 | ||
| KOG0681|consensus | 645 | 84.22 | ||
| TIGR00744 | 318 | ROK_glcA_fam ROK family protein (putative glucokin | 84.22 | |
| PF08841 | 332 | DDR: Diol dehydratase reactivase ATPase-like domai | 84.05 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 82.4 | |
| COG4819 | 473 | EutA Ethanolamine utilization protein, possible ch | 80.31 |
| >KOG0104|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-137 Score=1179.42 Aligned_cols=875 Identities=46% Similarity=0.715 Sum_probs=750.1
Q ss_pred HHHHHHHHHHhhhcccCceEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEecCcEeecHHHHHhhhhCCCc
Q psy18164 266 LCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSN 345 (1212)
Q Consensus 266 ~~~~~~~~~~l~~~~~~~~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~~~r~~G~~A~~~~~~~p~~ 345 (1212)
+++.++++|+|.+.+..++|++|||||+|++||+++||.|++|++|..++|++|++|+|.+++|+||++|..++.|+|++
T Consensus 5 ~llv~l~~~~~~~~~~~~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~~eR~fg~~A~~ma~r~P~~ 84 (902)
T KOG0104|consen 5 VLLVILLLCLFVALSSALAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKGGERIFGEAAASMATRFPQS 84 (902)
T ss_pred hHHHHHHHHHHhcccchhhheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecCCceehhhhhhhhhhcCcHH
Confidence 34444455556677788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHhHHhcCCCCCCHHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEe
Q psy18164 346 SYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVII 425 (1212)
Q Consensus 346 t~~~~k~llG~~~~~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VIt 425 (1212)
++.+++.|||++.+||.++.|.+++|++.++.++.|+++.|.+++...|++|+|+||+|.+.++.|+.+...+|.++|||
T Consensus 85 ~~~~l~~llgk~~~~~~v~ly~~~~p~~e~v~d~~rstV~F~i~d~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViT 164 (902)
T KOG0104|consen 85 TYRQLKDLLGKSLDDPTVDLYQKRFPFFELVEDPQRSTVVFKISDQEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVIT 164 (902)
T ss_pred HHHHHHHHhCcccCCcHHHHHHhcCCceeecccCccceEEEEeCCccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEe
Confidence 99999999999999999999999999999999989999999999988999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCC
Q psy18164 426 VPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERG 505 (1212)
Q Consensus 426 VP~~f~~~qR~al~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g 505 (1212)
||.||+++||+++.+||++||+++++||||.+||||+||++++.+++.+ ++++||||||+|+|.++||.|..++++..|
T Consensus 165 VP~~F~qaeR~all~Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~~-~q~~i~YDMGs~sT~Ativsy~~v~~k~~g 243 (902)
T KOG0104|consen 165 VPPFFNQAERRALLQAAQIAGLNVLQLINDGTAVALNYGVFRRKEINET-PQHYIFYDMGSGSTSATIVSYQLVKTKEQG 243 (902)
T ss_pred CCcccCHHHHHHHHHHHHhcCchhhhhhccchHHHhhhhhhccccCCCC-ceEEEEEecCCCceeEEEEEEEeecccccc
Confidence 9999999999999999999999999999999999999999999999888 999999999999999999999999887776
Q ss_pred ccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeec
Q psy18164 506 FVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGL 585 (1212)
Q Consensus 506 ~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l 585 (1212)
..++++++++++||++|||..|.++|++||.+.|+++++.+.++..|||||+||.++|+|+|.+||+|.++.++||+|
T Consensus 244 --~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL 321 (902)
T KOG0104|consen 244 --GKQPQIQVLGVGFDRTLGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESL 321 (902)
T ss_pred --CccceEEEEeeccCCccchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHH
Confidence 457899999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred ccCcceEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhC-CcccCCCCchh
Q psy18164 586 IDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG-VELSKNLNTDE 664 (1212)
Q Consensus 586 ~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg-~~i~~~~n~de 664 (1212)
++|+||+.+|||++||++|.+++.|+..||.++|..++++.++|++|+|+||+||||+||+.|.+++| .++++++|+||
T Consensus 322 ~ddiDFr~kvTRe~fEelc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDE 401 (902)
T KOG0104|consen 322 IDDIDFRLKVTREEFEELCADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADE 401 (902)
T ss_pred hhccccccceeHHHHHHHHHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 79999999999
Q ss_pred HHHhhHHHHHHhhcCCcccceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccCceEEEEEe
Q psy18164 665 AAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSY 744 (1212)
Q Consensus 665 aVA~GAa~~aa~ls~~fkv~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~~~i~i~~ 744 (1212)
|+++||+|+||.||.+||+++|.|.|.++|||.+.+.+..+--..++....||++|.+||++++++|+.+.+||.+.+.|
T Consensus 402 A~vmGav~~aA~LSksFKvKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysddf~~~~n~ 481 (902)
T KOG0104|consen 402 AAVMGAVYQAAHLSKSFKVKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDDFPFNINY 481 (902)
T ss_pred HHHHHHHHHHHhhcccccccceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCCccccccch
Confidence 99999999999999999999999999999999999986522002233456799999999999999999999999999999
Q ss_pred ccCcccCChhhhhccCceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCcccccc
Q psy18164 745 ASEIEHLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLG 824 (1212)
Q Consensus 745 g~~~~~~~~~~~~~~~~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~ 824 (1212)
+ +. | .++.+|.++||..+.++......+.++|+++|.+|.+|++.|+.++++|+++.++.+- ...
T Consensus 482 ~-~~-----------~-~nl~~velsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~evv~e~~~~~d~~--~~~ 546 (902)
T KOG0104|consen 482 G-DL-----------G-QNLTTVELSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEVVFEKQKEEDSG--DKK 546 (902)
T ss_pred h-hh-----------c-cCccEEEEecchHHHHhcccchhhccCceEEEEEcCcCceEEeeeeEEEeccCCcccc--hhh
Confidence 8 42 2 3577999999999998886566778999999999999999999999999986443321 123
Q ss_pred ccccccccCCCCCCCCC-Ccccc--cccCCCCCC----CCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecc
Q psy18164 825 NTLTSLFSRSKTDENEK-PINEA--VDEGNKTAE----EPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPI 897 (1212)
Q Consensus 825 ~~~~~~f~~~~~~~~~~-~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l 897 (1212)
.+.+++|.+++.+++.+ ..+++ +++..++.+ +++.+.+++. + ...+++++.. +.+..++.+.-.+.+.+
T Consensus 547 st~~K~~~~~e~e~~~~~~~~~e~ae~k~~ep~e~se~~ee~~~d~s~--e-~k~e~~t~e~-~~~~~~~~~~~p~~~~~ 622 (902)
T KOG0104|consen 547 STLSKLGSTSEGEETSDDSVQEEDAEEKGLEPSERSELEEEAEEDASQ--E-DKTEKETSEA-QKPTEKKETPAPMVVRL 622 (902)
T ss_pred hhhhccccccccccccccccchhhhhhhccCccccccccccccccccc--c-ccccccchhc-cCcchhhcccCcceeEe
Confidence 34455554433222222 11111 111111111 0011111110 0 0111111000 00111111111122224
Q ss_pred eeeEeecCCCCCCHHHHHHHHHHHHhHhHHHHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHH
Q psy18164 898 SASETRYGVSTLNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEIT 977 (1212)
Q Consensus 898 ~~~~~~~~~~~ls~eel~~~~~~l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~ 977 (1212)
.++.+..+.+.|+...+.+++.++..+.++|+.+.+|++|.|.||+|+|+++++|++++|..|++++|++.|.+.+..+.
T Consensus 623 ~i~~~~~~~~~l~~~~~~~~~~kl~d~~~~e~~k~~re~a~N~LE~~l~e~q~~l~d~ey~e~at~EEk~~L~~~~~~~~ 702 (902)
T KOG0104|consen 623 QIQETYPDLPVLNENALDAAVAKLEDFVQKEKEKSEREEASNELEAFLFELQDKLDDDEYAEVATEEEKKILKKKVSLLM 702 (902)
T ss_pred eeeeecccccCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCchHhhhcCHHHHHHHHHHHHHHH
Confidence 45556667778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCCCCCHHHHHHHHHHHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhcc---ccCcCCcccCCCCC
Q psy18164 978 NWLEEDGWNAEADVLENKLNEINSLVVPIWERHREHQERPEALKSLNNALNVSVTFYNSIKNL---SLNTNETEDLNLFS 1054 (1212)
Q Consensus 978 ~WL~edg~~a~~~~~~~Kl~eL~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~l~~~~~~---~~~~~~~~~~~~~t 1054 (1212)
+||+||+.+.+++.|.+|+.+|++++..+.+|.+++..+|+.++.|..+|+.+.+|+...++. +++. ..|+
T Consensus 703 ~Wleed~~~~~t~~~~ek~a~L~~l~~~~~~R~ee~kq~pe~l~~l~~~l~~s~~~l~~~~~~~~~~E~d------~~ft 776 (902)
T KOG0104|consen 703 DWLEEDGSQTPTEMLTEKLAELKKLETSKNFREEERKQFPEELEALKNLLNRSFSFLKQARNLSTWEEKD------TIFT 776 (902)
T ss_pred HHHHhhccccchhHHHHHHHHHHHHHhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccccccchhc------cchh
Confidence 999999999999999999999999999999999999999999999999999999999999854 3332 4799
Q ss_pred HhhhhhhccccchhhhccccccccccccchhhHHHHHHHHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHHHHHHHH
Q psy18164 1055 DIELKSLDTLSMVWFRVCWGFFFLLFKQDKGLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYL 1134 (1212)
Q Consensus 1055 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~W~~~~~~~q~~l~~~~dp~~~~~~i~~k~~~l~~~~~~~ 1134 (1212)
..+++.| .+.|+++..|+++....|.++++++||+++++||..|++.|+|++.|+
T Consensus 777 ~~e~~~L-------------------------~k~i~~t~~W~~~~~~~~~k~~k~edp~~k~kei~~K~k~Ldrev~~~ 831 (902)
T KOG0104|consen 777 KTEIDTL-------------------------EKVIAKTTAWLNDRLDLFEKKAKTEDPVLKVKEIEEKAKSLDREVLYL 831 (902)
T ss_pred hhhHHHH-------------------------HHHHHHhHHHhhhhHHHHHhhhcccCccccHHHHHHHHHhhHHHHHHH
Confidence 9999999 999999999999999999999999999999999999999999999999
Q ss_pred HhcccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCC
Q psy18164 1135 ENKSKLWMASLNKKKESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPS 1194 (1212)
Q Consensus 1135 ~~k~k~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1194 (1212)
+||+|.++|++.++++++++.++...+...+ ...+...||++..+......++.++.|+
T Consensus 832 lnK~k~~~~~~~k~~e~k~k~~~e~~~s~~~-~~~~~~ae~s~e~~t~e~~~e~~~~~P~ 890 (902)
T KOG0104|consen 832 LNKLKIRKPRKQKKKEKKKKTKEEKEESESN-DETEETAENSTETETTEVNDEQQTQEPS 890 (902)
T ss_pred HHHhhccCccccchhhccccchhhhhhhccC-CCCcchhhccccccceecccccCCCCCc
Confidence 9999999999998887777766655554432 2333344444444444444556666554
|
|
| >KOG0100|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-115 Score=933.61 Aligned_cols=603 Identities=29% Similarity=0.439 Sum_probs=558.6
Q ss_pred CceEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEecCcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCH
Q psy18164 282 GIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 361 (1212)
Q Consensus 282 ~~~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~ 361 (1212)
...||||||||||+||+++++| .++|+.|++|+|.|||+|+|.+.+|++|+.|++++..||+||+++.|||||+.|+|+
T Consensus 35 ~gtvigIdLGTTYsCVgV~kNg-rvEIiANdQGNRItPSyVaFt~derLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~ 113 (663)
T KOG0100|consen 35 LGTVIGIDLGTTYSCVGVYKNG-RVEIIANDQGNRITPSYVAFTDDERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDK 113 (663)
T ss_pred cceEEEEecCCceeeEEEEeCC-eEEEEecCCCCccccceeeeccchhhhhhHhhcccccCcccceechHHHhCcccCCh
Confidence 3569999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCceeeecCCCcceEEEEcCC--ceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHH
Q psy18164 362 VVQLFKSRFPYYDIVADEERGTIVFKTND--NELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSML 439 (1212)
Q Consensus 362 ~v~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~ 439 (1212)
.+|...+.|||..+..++ .+.+.+.+++ .+.|+|||+.+|+|.++++.|+.++|.++.++|+|||+||+++||+|++
T Consensus 114 ~vq~Dik~~Pfkvv~k~~-kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATK 192 (663)
T KOG0100|consen 114 SVQKDIKFLPFKVVNKDG-KPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATK 192 (663)
T ss_pred hhhhhhhcCceEEEcCCC-CccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhhc
Confidence 999999999998766554 6778887764 3789999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEe
Q psy18164 440 KAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVG 519 (1212)
Q Consensus 440 ~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~ 519 (1212)
+|..+|||+++++||||||||++||+.+... .+++||||+||||||||++.+. ++.|+|+++.
T Consensus 193 DAGtIAgLnV~RIiNePTaAAIAYGLDKk~g-----EknilVfDLGGGTFDVSlLtId------------nGVFeVlaTn 255 (663)
T KOG0100|consen 193 DAGTIAGLNVVRIINEPTAAAIAYGLDKKDG-----EKNILVFDLGGGTFDVSLLTID------------NGVFEVLATN 255 (663)
T ss_pred ccceeccceEEEeecCccHHHHHhcccccCC-----cceEEEEEcCCceEEEEEEEEc------------CceEEEEecC
Confidence 9999999999999999999999999987753 7999999999999999999987 5599999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccCcceEEEEeHHH
Q psy18164 520 YDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAE 599 (1212)
Q Consensus 520 ~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~~d~~~~itR~e 599 (1212)
||.+|||.|||+++++||.+.|++ +++.|++.+.|++.+|+++||+||..||...++.+.||+++++.||+-++||..
T Consensus 256 GDThLGGEDFD~rvm~~fiklykk--K~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~DfSEtLtRAk 333 (663)
T KOG0100|consen 256 GDTHLGGEDFDQRVMEYFIKLYKK--KHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDGVDFSETLTRAK 333 (663)
T ss_pred CCcccCccchHHHHHHHHHHHHhh--hcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeeccccccccchhhhhH
Confidence 999999999999999999999998 788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHh-CCcccCCCCchhHHHhhHHHHHHhhc
Q psy18164 600 FEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVV-GVELSKNLNTDEAAALGAVYKAADLS 678 (1212)
Q Consensus 600 fe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~f-g~~i~~~~n~deaVA~GAa~~aa~ls 678 (1212)
||+|.-+||.....|++++|+++++...+|+.|+||||++|||.||++|+++| |++.++.+|||||||+|||.||..+|
T Consensus 334 FEElNmDLFr~TlkPv~kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvls 413 (663)
T KOG0100|consen 334 FEELNMDLFRKTLKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLS 413 (663)
T ss_pred HHHhhhHHHHHhhHHHHHHHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999 59999999999999999999999999
Q ss_pred CCcccceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccCc---eEEEEEeccCcccCChhh
Q psy18164 679 TGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQ 755 (1212)
Q Consensus 679 ~~fkv~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~ 755 (1212)
+.-...++++.|+.|.++||+.. |+ .+..||++++.+|.+|+..|++..|+ +.|.+|+| ++....
T Consensus 414 Gee~t~divLLDv~pLtlGIETv-----GG---VMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEG-ER~mtk--- 481 (663)
T KOG0100|consen 414 GEEDTGDIVLLDVNPLTLGIETV-----GG---VMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEG-ERPMTK--- 481 (663)
T ss_pred cccCcCcEEEEeeccccceeeee-----cc---eeeccccCCcccCccccceeeecccCCceEEEEEeec-cccccc---
Confidence 98889999999999999999987 55 38899999999999999999998666 89999999 876322
Q ss_pred hhccCceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccccCCC
Q psy18164 756 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSK 835 (1212)
Q Consensus 756 ~~~~~~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~~~~ 835 (1212)
++..|+.|.++||++++++. ++|+|+|++|.||||.|++.+ ..|.
T Consensus 482 ----dn~lLGkFdltGipPAPRGv-------pqIEVtFevDangiL~VsAeD---------Kgtg--------------- 526 (663)
T KOG0100|consen 482 ----DNHLLGKFDLTGIPPAPRGV-------PQIEVTFEVDANGILQVSAED---------KGTG--------------- 526 (663)
T ss_pred ----cccccccccccCCCCCCCCC-------ccEEEEEEEccCceEEEEeec---------cCCC---------------
Confidence 35556788999999999988 799999999999999998873 1110
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHHHHH
Q psy18164 836 TDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVE 915 (1212)
Q Consensus 836 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~eel~ 915 (1212)
++.+ |. ..++...||+|+|+
T Consensus 527 ---------------------------------------------------~~~k------it---ItNd~~rLt~EdIe 546 (663)
T KOG0100|consen 527 ---------------------------------------------------KKEK------IT---ITNDKGRLTPEDIE 546 (663)
T ss_pred ---------------------------------------------------Ccce------EE---EecCCCCCCHHHHH
Confidence 0011 11 22456679999999
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHhhHHHHHHHHHhcccc-ccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHH
Q psy18164 916 KSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLEL-EEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLEN 994 (1212)
Q Consensus 916 ~~~~~l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~-~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~~~ 994 (1212)
+|++..++++..|+..+++.++||.||+|.|.+++.+.+ +.+...+++++++.+...+++..+||+++ .+|.+++|++
T Consensus 547 rMv~eAekFAeeDk~~KekieaRN~LE~YayslKnqi~dkekLg~Kl~~edKe~~e~av~e~~eWL~~n-~~a~~Ee~~e 625 (663)
T KOG0100|consen 547 RMVNEAEKFAEEDKKLKEKIEARNELESYAYSLKNQIGDKEKLGGKLSDEDKETIEDAVEEALEWLESN-QDASKEEFKE 625 (663)
T ss_pred HHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhhhccCchhHhcccCChhHHHHHHHHHHHHHHHHhhc-ccccHHHHHH
Confidence 999999999999999999999999999999999999976 67999999999999999999999999964 9999999999
Q ss_pred HHHHHHHhhHHHHHHHHhh
Q psy18164 995 KLNEINSLVVPIWERHREH 1013 (1212)
Q Consensus 995 Kl~eL~~~~~pi~~R~~e~ 1013 (1212)
|+++|..+++||..+++..
T Consensus 626 k~kele~vv~PiisklY~~ 644 (663)
T KOG0100|consen 626 KKKELEAVVQPIISKLYGG 644 (663)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 9999999999999987653
|
|
| >KOG0103|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-113 Score=986.41 Aligned_cols=725 Identities=30% Similarity=0.454 Sum_probs=644.2
Q ss_pred ceEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEecCcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCHH
Q psy18164 283 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 362 (1212)
Q Consensus 283 ~~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~~ 362 (1212)
|+|+|||||+.+|.+|+++.| ++++|.|+.|+|.||++|+|..+.|++|..|..+..+|+.||+..+|||+|++|+||.
T Consensus 1 msvvG~D~Gn~nc~iavAr~~-gIe~i~nd~Snr~TPa~vsfg~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~ 79 (727)
T KOG0103|consen 1 MSVVGFDLGNENCYIAVARQG-GIEVVANDYSNRETPAIVSFGPKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPE 79 (727)
T ss_pred CCceeeeccccceeeeeeccC-CceeeeeccccccCcceeeeccccceeeeccccceeecccccchhhhhhhccccCChH
Confidence 569999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCceeeec-CCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHH
Q psy18164 363 VQLFKSRFPYYDIVA-DEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 441 (1212)
Q Consensus 363 v~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~A 441 (1212)
+|...+.+|+..+.. |+..+..+-+.++.+.|++++|+||+|.+|+..++..+..++.+|||+||+||++.||+++++|
T Consensus 80 ~q~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldA 159 (727)
T KOG0103|consen 80 VQREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDA 159 (727)
T ss_pred hhhcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhH
Confidence 999999999977665 4434444445677789999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCeeeeechhHHHHHhhcccccccC-CCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEec
Q psy18164 442 GELAGLKVLQLMNDYTAVALNYGIFKRKDF-NETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGY 520 (1212)
Q Consensus 442 a~~AGl~~~~li~EptAaAl~y~~~~~~~~-~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~ 520 (1212)
|++|||++++||||.||+||+||+++..-. ++.++++|+|+|||++++++|++.|. +| +++++++.+
T Consensus 160 A~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~------kG------~lkvl~ta~ 227 (727)
T KOG0103|consen 160 ARIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFT------KG------KLKVLATAF 227 (727)
T ss_pred HhhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeec------cC------cceeeeeec
Confidence 999999999999999999999999987632 22238999999999999999999997 34 899999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccCcceEEEEeHHHH
Q psy18164 521 DRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEF 600 (1212)
Q Consensus 521 d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~~d~~~~itR~ef 600 (1212)
|+.+||++||.+|.+||+.+|+. ++++|+..|+|+..||+.+|||+|++||+|+....+|||+|+|.|.+..|+|+||
T Consensus 228 D~~lGgr~fDe~L~~hfa~efk~--kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~dvs~~i~ReEf 305 (727)
T KOG0103|consen 228 DRKLGGRDFDEALIDHFAKEFKT--KYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKDVSSKIKREEF 305 (727)
T ss_pred ccccccchHHHHHHHHHHHHhcc--ccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecchhhhhccHHHH
Confidence 99999999999999999999999 6677999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcCC
Q psy18164 601 EALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTG 680 (1212)
Q Consensus 601 e~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~~ 680 (1212)
|+||.|+++|+..++.++|+++++..+||+.|++|||+||||.|++.|+++||+++++++|.|||||+|||++||++||.
T Consensus 306 Eel~~plL~rv~~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~ALqcAIlSP~ 385 (727)
T KOG0103|consen 306 EELSAPLLERVEVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAALQCAILSPT 385 (727)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHhCCcccccccHHHHHHHhHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccCceEEEEEeccCcccCChhhhhccC
Q psy18164 681 FKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQIAMLG 760 (1212)
Q Consensus 681 fkv~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~~~i~i~~g~~~~~~~~~~~~~~~ 760 (1212)
||||+|.++|+.||+|.+.|....+|++ ....+|++|+++|..|.+||++. .+|++.++|+ +...+|. .
T Consensus 386 frVRef~v~Di~pysIs~~w~~~~ed~~---~~~evF~~~~~~p~~K~lT~~Rk-~~F~lea~yt-~~~~lp~------~ 454 (727)
T KOG0103|consen 386 FRVREFSVEDIVPYSISLRWVKQGEDGG---SVTEVFPKGHPSPSVKLLTFNRK-GPFTLEAKYT-KVNKLPY------P 454 (727)
T ss_pred ccceecceecccceeEEEEeccccccCC---CceeeecCCCCCCCceEEEEEec-CceEEEEEec-cccccCC------C
Confidence 9999999999999999999997766643 24689999999999999999998 8999999999 7666662 2
Q ss_pred ceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccccCCCCCCCC
Q psy18164 761 TKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKTDENE 840 (1212)
Q Consensus 761 ~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~~~~~~~~~ 840 (1212)
...|++|.+.++.+. ..++..+++|++++|.+|+++|..+.++.+...++....
T Consensus 455 ~~kI~~~~i~~v~~~------~~ge~skVKvkvr~n~~Gi~~i~sA~~~e~~~veev~~~-------------------- 508 (727)
T KOG0103|consen 455 KPKIEKWTITGVTPS------EDGEFSKVKVKVRLNEHGIDTIESATLIEDIEVEEVPEE-------------------- 508 (727)
T ss_pred CCceeeEEecccccC------ccccccceeEEEEEcCccceeeecceeecccchhccccc--------------------
Confidence 467889999998865 334567899999999999999999976654322210000
Q ss_pred CCcccccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHHHHHHHHHH
Q psy18164 841 KPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSK 920 (1212)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~eel~~~~~~ 920 (1212)
++ + ...+ +.. .+..+..+.|+++++..|++.... ...|+..+++..+++
T Consensus 509 ------~~------e----~~~~-------~~~------~~~~~~~~~k~kvk~~~L~~~~~~--~~~l~~~~l~~~~e~ 557 (727)
T KOG0103|consen 509 ------PM------E----YDDA-------AKM------LERIAPAENKKKVKKVDLPIEAYT--KGALITDELELYIEK 557 (727)
T ss_pred ------hh------h----hhcc-------hhh------hhhhccccccceeeeccccceeee--ccccCHHHHHHHHHH
Confidence 00 0 0000 000 000111122444555566655433 246999999999999
Q ss_pred HHhHhHHHHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH
Q psy18164 921 LDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEIN 1000 (1212)
Q Consensus 921 l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~~~Kl~eL~ 1000 (1212)
+.+|..+|+...+|.++||+||+|||+||++|. +.|..|+++++|+.|...|+++++||||||+|.++..|..||.+|+
T Consensus 558 E~~M~~qD~~~~Et~D~KNaleeyVY~~R~kl~-~~y~~f~~~a~~e~~~~~l~~~E~wlyedGed~~k~~Y~~kl~elk 636 (727)
T KOG0103|consen 558 ENKMILQDKLEKETVDAKNALEEYVYDMRDKLS-DKYEDFITDAEREKLKKMLTDTEEWLYEDGEDQTKAVYVAKLEELK 636 (727)
T ss_pred HHHhhhhhhhhhhhccHHHHHHHHHHHHHHHhh-hhhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHH
Confidence 999999999999999999999999999999997 7999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccccCcCCcccCCCCCHhhhhhhccccchhhhcccccccccc
Q psy18164 1001 SLVVPIWERHREHQERPEALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLSMVWFRVCWGFFFLLF 1080 (1212)
Q Consensus 1001 ~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~ 1080 (1212)
++++ ..|+.+++.||.+++++.+.++..+..+.+ +...+
T Consensus 637 ~~g~--~~r~~e~~~r~k~~d~~~~~i~~~r~~~~~--------------------~~~k~------------------- 675 (727)
T KOG0103|consen 637 KLGD--KKRFDENEERPKAFDELGKKIQEIRKAIES--------------------EMEKV------------------- 675 (727)
T ss_pred hhhh--hhhhhhhhhhhHHHHHHHHHHHHHHHHHHH--------------------HHHHH-------------------
Confidence 9999 899999999999999999999988875544 33444
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHHHHHHHHHhccc
Q psy18164 1081 KQDKGLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSK 1139 (1212)
Q Consensus 1081 ~~~~~i~~~~~~~~~W~~~~~~~q~~l~~~~dp~~~~~~i~~k~~~l~~~~~~~~~k~k 1139 (1212)
...+++.+.|++..+.+|.+++++.+| +..++|+.+.+.|+..+.++++++|
T Consensus 676 ------~~~~~~a~kw~~~~~~~q~~~~~t~~p-v~~~e~~~~~~~l~~~~~~i~~~~k 727 (727)
T KOG0103|consen 676 ------LLEIEEAEKWLERKSNKQNKLSKTADP-VPSSEIESEAKELNNTCSDIISKPK 727 (727)
T ss_pred ------HHHHHHHHHHHhhhhhhhhcccCCCCC-CchHHHHHhhhhhccccccccccCC
Confidence 788999999999999999999999999 9999999999999999999998653
|
|
| >PTZ00009 heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-96 Score=913.97 Aligned_cols=605 Identities=29% Similarity=0.448 Sum_probs=540.1
Q ss_pred CceEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEecCcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCH
Q psy18164 282 GIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 361 (1212)
Q Consensus 282 ~~~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~ 361 (1212)
.+++||||||||||+||++++| +++|++|.+|+|+|||+|+|.+++++||..|..++.++|.++++++|||||+.++++
T Consensus 3 ~~~~iGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~tPS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 81 (653)
T PTZ00009 3 KGPAIGIDLGTTYSCVGVWKNE-NVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDS 81 (653)
T ss_pred cccEEEEEeCcccEEEEEEeCC-ceEEEECCCCCccCCcEEEECCCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCch
Confidence 4679999999999999999998 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCceeeecCCCcceEEEEcCC-ceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHH
Q psy18164 362 VVQLFKSRFPYYDIVADEERGTIVFKTND-NELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLK 440 (1212)
Q Consensus 362 ~v~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~ 440 (1212)
.++.+.+.|||..+...+....+.+...+ +..|+|++|++++|++|++.|+.+++.++.++|||||+||++.||+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~ 161 (653)
T PTZ00009 82 VVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKD 161 (653)
T ss_pred hHhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHH
Confidence 99999999999766555445555555443 47899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEec
Q psy18164 441 AGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGY 520 (1212)
Q Consensus 441 Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~ 520 (1212)
||++|||++++||+||+|||++|+..+... . ++++|||||||||||+||+++. .+.++|+++.+
T Consensus 162 Aa~~AGl~v~~li~EptAAAl~y~~~~~~~---~-~~~vlv~D~GggT~dvsv~~~~------------~~~~~v~a~~g 225 (653)
T PTZ00009 162 AGTIAGLNVLRIINEPTAAAIAYGLDKKGD---G-EKNVLIFDLGGGTFDVSLLTIE------------DGIFEVKATAG 225 (653)
T ss_pred HHHHcCCceeEEecchHHHHHHHhhhccCC---C-CCEEEEEECCCCeEEEEEEEEe------------CCeEEEEEecC
Confidence 999999999999999999999999865431 2 6889999999999999999986 34799999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccCcceEEEEeHHHH
Q psy18164 521 DRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEF 600 (1212)
Q Consensus 521 d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~~d~~~~itR~ef 600 (1212)
|..|||++||.+|++|++++|..+++ +.++..+++++.||+.+||++|+.||++.++.+.|++++++.|++++|||++|
T Consensus 226 d~~lGG~d~D~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~~d~~~~itR~~f 304 (653)
T PTZ00009 226 DTHLGGEDFDNRLVEFCVQDFKRKNR-GKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARF 304 (653)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHhcc-CCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCCceEEEEECHHHH
Confidence 99999999999999999999987432 35778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhC-CcccCCCCchhHHHhhHHHHHHhhcC
Q psy18164 601 EALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG-VELSKNLNTDEAAALGAVYKAADLST 679 (1212)
Q Consensus 601 e~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg-~~i~~~~n~deaVA~GAa~~aa~ls~ 679 (1212)
|++|+|+++++..+|+++|++++++..+|+.|+||||+||||+||++|+++|| ..+..++|||||||+|||++||++++
T Consensus 305 e~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~ 384 (653)
T PTZ00009 305 EELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTG 384 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcC
Confidence 99999999999999999999999999999999999999999999999999997 68889999999999999999999998
Q ss_pred C--cccceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccCc---eEEEEEeccCcccCChh
Q psy18164 680 G--FKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPE 754 (1212)
Q Consensus 680 ~--fkv~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~ 754 (1212)
. |+++++.+.|++||+||++.. ++ .+.+||++|+++|.+++.+|++..++ +.|.|||| +.....
T Consensus 385 ~~~~~~~~~~~~dv~p~slgi~~~-----~~---~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~eg-e~~~~~-- 453 (653)
T PTZ00009 385 EQSSQVQDLLLLDVTPLSLGLETA-----GG---VMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEG-ERAMTK-- 453 (653)
T ss_pred CccccccceEEEeecccccCcccc-----CC---ceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEec-ccccCC--
Confidence 5 889999999999999998764 22 26789999999999999999876444 99999999 764322
Q ss_pred hhhccCceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccccCC
Q psy18164 755 QIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRS 834 (1212)
Q Consensus 755 ~~~~~~~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~~~ 834 (1212)
.+..|+++.|.|+++++++. +.|+++|++|.+|+|+|+..+ .++.
T Consensus 454 -----~n~~lg~~~i~~i~~~~~g~-------~~i~v~f~id~~Gil~v~~~~---------~~t~-------------- 498 (653)
T PTZ00009 454 -----DNNLLGKFHLDGIPPAPRGV-------PQIEVTFDIDANGILNVSAED---------KSTG-------------- 498 (653)
T ss_pred -----CCceEEEEEEcCCCCCCCCC-------ceEEEEEEECCCCeEEEEEec---------ccCC--------------
Confidence 34568889999998775443 579999999999999998762 0000
Q ss_pred CCCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHHHH
Q psy18164 835 KTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQV 914 (1212)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~eel 914 (1212)
|.+ .+.+. ....+|+.+++
T Consensus 499 ------------------------------------------------------~~~----~~~i~---~~~~~ls~~~i 517 (653)
T PTZ00009 499 ------------------------------------------------------KSN----KITIT---NDKGRLSKADI 517 (653)
T ss_pred ------------------------------------------------------cee----eEEEe---eccccccHHHH
Confidence 000 11221 12357999999
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHH
Q psy18164 915 EKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLEN 994 (1212)
Q Consensus 915 ~~~~~~l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~~~ 994 (1212)
+++++++.+|..+|+.++++.+++|+||+|||++|++|++++|..++++++|++|.+.++++++||| +++++++++|++
T Consensus 518 ~~~~~~~~~~~~~d~~~~~~~eakN~lEs~Iy~~r~~L~~~~~~~~~t~ee~~~l~~~l~~~~~wL~-~~~~~~~~~~~~ 596 (653)
T PTZ00009 518 DRMVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLE-KNQLAEKEEFEH 596 (653)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHHHHh-cCCchhHHHHHH
Confidence 9999999999999999999999999999999999999976679999999999999999999999999 578999999999
Q ss_pred HHHHHHHhhHHHHHHHHh
Q psy18164 995 KLNEINSLVVPIWERHRE 1012 (1212)
Q Consensus 995 Kl~eL~~~~~pi~~R~~e 1012 (1212)
|+++|+++++||..|++.
T Consensus 597 kl~eL~~~~~pi~~r~~~ 614 (653)
T PTZ00009 597 KQKEVESVCNPIMTKMYQ 614 (653)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999999753
|
|
| >PRK13410 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-94 Score=887.42 Aligned_cols=608 Identities=26% Similarity=0.384 Sum_probs=533.2
Q ss_pred eEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEe-cCcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCHH
Q psy18164 284 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 362 (1212)
Q Consensus 284 ~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~-~~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~~ 362 (1212)
.|||||||||||+||++.+| .++++.|..|+|.|||+|+|. ++++++|..|+.++.++|.++++++||+||+.+++
T Consensus 3 ~viGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~-- 79 (668)
T PRK13410 3 RIVGIDLGTTNSVVAVMEGG-KPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE-- 79 (668)
T ss_pred cEEEEEeCCCcEEEEEEECC-eEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchh--
Confidence 48999999999999999999 556889999999999999996 57899999999999999999999999999999866
Q ss_pred HHhhhhcCCceeeecCCCcceEEEEcC-CceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHH
Q psy18164 363 VQLFKSRFPYYDIVADEERGTIVFKTN-DNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 441 (1212)
Q Consensus 363 v~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~A 441 (1212)
++...+++||...... .+.+.+.+. .+..|+|++|++|+|++|++.|+.+++.++.++|||||+||++.||+++++|
T Consensus 80 ~~~~~~~~~~~v~~~~--~g~~~i~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 157 (668)
T PRK13410 80 LDPESKRVPYTIRRNE--QGNVRIKCPRLEREFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDA 157 (668)
T ss_pred hHHhhccCCeEEEECC--CCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHH
Confidence 5666778888665433 344555542 3478999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecC
Q psy18164 442 GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYD 521 (1212)
Q Consensus 442 a~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d 521 (1212)
|++|||++++||+||+||||+|+..+.. ++++|||||||||||+||+++. .+.++|+++.+|
T Consensus 158 a~~AGl~v~~li~EPtAAAlayg~~~~~------~~~vlV~DlGgGT~Dvsv~~~~------------~g~~~V~at~gd 219 (668)
T PRK13410 158 GRIAGLEVERILNEPTAAALAYGLDRSS------SQTVLVFDLGGGTFDVSLLEVG------------NGVFEVKATSGD 219 (668)
T ss_pred HHHcCCCeEEEecchHHHHHHhccccCC------CCEEEEEECCCCeEEEEEEEEc------------CCeEEEEEeecC
Confidence 9999999999999999999999986532 6899999999999999999986 348999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccC----cceEEEEeH
Q psy18164 522 RTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDE----IDFKLLVTR 597 (1212)
Q Consensus 522 ~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~----~d~~~~itR 597 (1212)
..|||.+||.+|++|+.++|.. +.+.++..+++++.+|+.+||++|+.||.+..+.+.++.++.+ .++.+.|||
T Consensus 220 ~~lGG~dfD~~l~~~l~~~f~~--~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR 297 (668)
T PRK13410 220 TQLGGNDFDKRIVDWLAEQFLE--KEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDR 297 (668)
T ss_pred CCCChhHHHHHHHHHHHHHHHh--hhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECH
Confidence 9999999999999999999987 4456888899999999999999999999999999999987643 478899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhh
Q psy18164 598 AEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADL 677 (1212)
Q Consensus 598 ~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~l 677 (1212)
++||++|+++++++..+|+++|+++++.+.+|+.|+||||+||||+||+.|+++||.++..++|||||||+|||++|+++
T Consensus 298 ~~FE~l~~~l~~r~~~~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaVA~GAAi~aa~l 377 (668)
T PRK13410 298 KQFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAGIL 377 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHcCCCcccCCCCchHHHHhHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred cCCcccceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccC---ceEEEEEeccCcccCChh
Q psy18164 678 STGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVG---DFNFNVSYASEIEHLNPE 754 (1212)
Q Consensus 678 s~~fkv~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~---~~~i~i~~g~~~~~~~~~ 754 (1212)
++. ++++.+.|++||+|||++. ++ .+.+||++|+++|++++.+|.+..+ .+.|.||+| +.....
T Consensus 378 s~~--~~~~~l~Dv~p~slgie~~-----~g---~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qG-e~~~~~-- 444 (668)
T PRK13410 378 AGE--LKDLLLLDVTPLSLGLETI-----GG---VMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQG-EREMAS-- 444 (668)
T ss_pred ccc--ccceeEEeeccccccceec-----CC---eeEEEEeCCCcccccccccceeccCCCcEEEEEEEee-cccccc--
Confidence 984 6889999999999999886 22 3678999999999999999987643 489999999 765322
Q ss_pred hhhccCceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccccCC
Q psy18164 755 QIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRS 834 (1212)
Q Consensus 755 ~~~~~~~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~~~ 834 (1212)
.+..|+++.|.|+++++++. ++|+|+|++|.||+|+|++.+. .|.
T Consensus 445 -----~n~~lg~~~l~~i~~~~~g~-------~~I~v~f~id~nGiL~V~a~d~---------~tg-------------- 489 (668)
T PRK13410 445 -----DNKSLGRFKLSGIPPAPRGV-------PQVQVAFDIDANGILQVSATDR---------TTG-------------- 489 (668)
T ss_pred -----CCceEEEEEEeCCCCCCCCC-------CeEEEEEEECCCcEEEEEEEEc---------CCC--------------
Confidence 34568899999999875543 6899999999999999988630 000
Q ss_pred CCCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHHHH
Q psy18164 835 KTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQV 914 (1212)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~eel 914 (1212)
++.. +.+. ...+|+.+++
T Consensus 490 ------------------------------------------------------~~~~----~~i~----~~~~ls~~ei 507 (668)
T PRK13410 490 ------------------------------------------------------REQS----VTIQ----GASTLSEQEV 507 (668)
T ss_pred ------------------------------------------------------ceee----eeec----ccccCCHHHH
Confidence 0000 1111 2357999999
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHhhHHHHHHHHHhcccc--ccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q psy18164 915 EKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLEL--EEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVL 992 (1212)
Q Consensus 915 ~~~~~~l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~--~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~ 992 (1212)
+++++++.+|...|+.++++.++||+||+|||++|++|.+ ++|..++++++|++|...|+++++|||+++.+..++.|
T Consensus 508 ~~~~~~~~~~~~~d~~~~~~~e~kn~~e~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~wL~~~~~~~~~~~~ 587 (668)
T PRK13410 508 NRMIQEAEAKADEDRRRRERIEKRNRALTLIAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQDDDRELDLAV 587 (668)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999999999999999999999999999999999964 36899999999999999999999999998888899999
Q ss_pred HHHHHHHHHhhHHHHHHHHhhccchHHHHHHHHHHH
Q psy18164 993 ENKLNEINSLVVPIWERHREHQERPEALKSLNNALN 1028 (1212)
Q Consensus 993 ~~Kl~eL~~~~~pi~~R~~e~~~rp~a~~~l~~~l~ 1028 (1212)
.+++++|+.++.+|..|+.| +...-+..+++.+.
T Consensus 588 ~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 621 (668)
T PRK13410 588 ADLQEALYGLNREVRAEYKE--EDEGPLQGIKNTFG 621 (668)
T ss_pred HHHHHHHHHHHHHHHHHHhh--cccchhhhHHhhcc
Confidence 99999999999999999998 23333334444443
|
|
| >PTZ00400 DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-93 Score=885.62 Aligned_cols=588 Identities=26% Similarity=0.400 Sum_probs=524.4
Q ss_pred ceEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEe-cCcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCH
Q psy18164 283 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 361 (1212)
Q Consensus 283 ~~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~-~~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~ 361 (1212)
++|||||||||||+||++.+| +++|+.|.+|+|.+||+|+|. ++++++|..|..++.++|.++++++|||||+.++|+
T Consensus 41 ~~viGIDlGTt~s~va~~~~~-~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 119 (663)
T PTZ00400 41 GDIVGIDLGTTNSCVAIMEGS-QPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDED 119 (663)
T ss_pred CcEEEEEECcccEEEEEEeCC-eeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcH
Confidence 469999999999999999887 789999999999999999996 468999999999999999999999999999999999
Q ss_pred HHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHH
Q psy18164 362 VVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 441 (1212)
Q Consensus 362 ~v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~A 441 (1212)
.++.+.+++||..+... ++.+.+.+++ ..|+|+++++|+|++|++.|+.+++.++.++|||||+||++.||+++++|
T Consensus 120 ~~~~~~~~~p~~~~~~~--~~~~~~~~~~-~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 196 (663)
T PTZ00400 120 ATKKEQKILPYKIVRAS--NGDAWIEAQG-KKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDA 196 (663)
T ss_pred HHHhhhccCCeEEEecC--CCceEEEECC-EEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHH
Confidence 99999999999765443 3445566654 78999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecC
Q psy18164 442 GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYD 521 (1212)
Q Consensus 442 a~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d 521 (1212)
|++|||++++||+||+|||++|+..... ++++|||||||||||+||+++. .+.++|++++|+
T Consensus 197 a~~AGl~v~~li~EptAAAlay~~~~~~------~~~vlV~DlGgGT~DvSv~~~~------------~g~~~v~a~~gd 258 (663)
T PTZ00400 197 GKIAGLDVLRIINEPTAAALAFGMDKND------GKTIAVYDLGGGTFDISILEIL------------GGVFEVKATNGN 258 (663)
T ss_pred HHHcCCceEEEeCchHHHHHHhccccCC------CcEEEEEeCCCCeEEEEEEEec------------CCeeEEEecccC
Confidence 9999999999999999999999986432 6899999999999999999986 347999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccC----cceEEEEeH
Q psy18164 522 RTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDE----IDFKLLVTR 597 (1212)
Q Consensus 522 ~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~----~d~~~~itR 597 (1212)
.++||++||.+|++|+.++|+. +.+.++..+++++.+|+.+||++|+.||.+.++.+.++.++.+ .+|.++|||
T Consensus 259 ~~LGG~d~D~~l~~~l~~~f~~--~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR 336 (663)
T PTZ00400 259 TSLGGEDFDQRILNYLIAEFKK--QQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSR 336 (663)
T ss_pred CCcCHHHHHHHHHHHHHHHhhh--hcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECH
Confidence 9999999999999999999987 4456788899999999999999999999999999999887654 579999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhh
Q psy18164 598 AEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADL 677 (1212)
Q Consensus 598 ~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~l 677 (1212)
++||++|+|+++++..+|+++|+++++.+.+|+.|+||||+||+|+||+.|+++||.++..++|||+|||+|||++|+++
T Consensus 337 ~efe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~aa~l 416 (663)
T PTZ00400 337 AKLEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAGVL 416 (663)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhCCCcccCCCCccceeeccHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred cCCcccceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccC---ceEEEEEeccCcccCChh
Q psy18164 678 STGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVG---DFNFNVSYASEIEHLNPE 754 (1212)
Q Consensus 678 s~~fkv~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~---~~~i~i~~g~~~~~~~~~ 754 (1212)
++. ++++.+.|++||+|||++. ++ .+.+||++|+++|.+++.+|++..+ .+.|.|||| +.....
T Consensus 417 ~~~--~~~~~~~dv~p~slgi~~~-----~g---~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~eg-e~~~~~-- 483 (663)
T PTZ00400 417 KGE--IKDLLLLDVTPLSLGIETL-----GG---VFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQG-EREMAA-- 483 (663)
T ss_pred cCC--ccceEEEeccccceEEEec-----CC---eeEEEEecCccCCccceeeeeeccCCCceEEEEEEEe-cCccCC--
Confidence 985 6889999999999999986 22 3678999999999999999987644 389999999 765332
Q ss_pred hhhccCceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccccCC
Q psy18164 755 QIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRS 834 (1212)
Q Consensus 755 ~~~~~~~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~~~ 834 (1212)
.+..|+++.|.|+++++++. +.|+|+|++|.||+|+|++.+. .+
T Consensus 484 -----~n~~lg~~~i~~i~~~~~g~-------~~i~v~f~id~~Gil~v~a~~~---------~~--------------- 527 (663)
T PTZ00400 484 -----DNKLLGQFDLVGIPPAPRGV-------PQIEVTFDVDANGIMNISAVDK---------ST--------------- 527 (663)
T ss_pred -----cCceeEEEEEcCCCCCCCCC-------ceEEEEEEECCCCCEEEEEEec---------cC---------------
Confidence 24568888999998775443 5799999999999999987630 00
Q ss_pred CCCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHHHH
Q psy18164 835 KTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQV 914 (1212)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~eel 914 (1212)
.++. .++++ ...+|+.+++
T Consensus 528 -----------------------------------------------------~~~~----~~~i~----~~~~ls~~ei 546 (663)
T PTZ00400 528 -----------------------------------------------------GKKQ----EITIQ----SSGGLSDEEI 546 (663)
T ss_pred -----------------------------------------------------CcEE----EEEee----ccccccHHHH
Confidence 0001 12221 2256999999
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHH
Q psy18164 915 EKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLEN 994 (1212)
Q Consensus 915 ~~~~~~l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~~~ 994 (1212)
+++++++.+|..+|+.++++.+++|+||+|||++|++|. ++..++++++|++|.+.++++++|||++ +.++|++
T Consensus 547 ~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~--e~~~~~s~~ere~i~~~l~~~~~WL~~~----d~~~i~~ 620 (663)
T PTZ00400 547 EKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQLS--DLKDKISDADKDELKQKITKLRSTLSSE----DVDSIKD 620 (663)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHH
Confidence 999999999999999999999999999999999999995 3889999999999999999999999965 5789999
Q ss_pred HHHHHHHhhHHHHHHH
Q psy18164 995 KLNEINSLVVPIWERH 1010 (1212)
Q Consensus 995 Kl~eL~~~~~pi~~R~ 1010 (1212)
++++|+++++++..++
T Consensus 621 k~~eL~~~l~~l~~k~ 636 (663)
T PTZ00400 621 KTKQLQEASWKISQQA 636 (663)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988743
|
|
| >PRK13411 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-92 Score=873.42 Aligned_cols=589 Identities=26% Similarity=0.389 Sum_probs=521.8
Q ss_pred eEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEec-CcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCHH
Q psy18164 284 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 362 (1212)
Q Consensus 284 ~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~-~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~~ 362 (1212)
.|||||||||||+||++.+| .+.++.|.+|+|.+||+|+|.+ +++++|..|+.++.++|.++++++|||||+.++++.
T Consensus 3 ~viGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 81 (653)
T PRK13411 3 KVIGIDLGTTNSCVAVLEGG-KPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTE 81 (653)
T ss_pred cEEEEEeCcccEEEEEEECC-EEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchh
Confidence 48999999999999999999 5569999999999999999964 689999999999999999999999999999998864
Q ss_pred HHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHHH
Q psy18164 363 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 442 (1212)
Q Consensus 363 v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~Aa 442 (1212)
..++++||..+... ++.+.+.+++ ..++|+++++|+|++|++.|+.+++.++.++|||||+||++.||+++++||
T Consensus 82 --~~~~~~~~~~v~~~--~~~~~~~i~~-~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 156 (653)
T PRK13411 82 --EERSRVPYTCVKGR--DDTVNVQIRG-RNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAG 156 (653)
T ss_pred --HHhhcCCceEEecC--CCceEEEECC-EEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHHH
Confidence 45688998766543 3445566654 689999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCC
Q psy18164 443 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 522 (1212)
Q Consensus 443 ~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~ 522 (1212)
++|||++++||+||+|||++|+..+.. . ..++|||||||||||+||+++. .+.++|++++||.
T Consensus 157 ~~AGl~v~~li~EPtAAAl~y~~~~~~----~-~~~vlV~DlGgGT~dvsi~~~~------------~~~~~V~at~gd~ 219 (653)
T PRK13411 157 TIAGLEVLRIINEPTAAALAYGLDKQD----Q-EQLILVFDLGGGTFDVSILQLG------------DGVFEVKATAGNN 219 (653)
T ss_pred HHcCCCeEEEecchHHHHHHhcccccC----C-CCEEEEEEcCCCeEEEEEEEEe------------CCEEEEEEEecCC
Confidence 999999999999999999999986543 2 6889999999999999999986 3489999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccC----cceEEEEeHH
Q psy18164 523 TLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDE----IDFKLLVTRA 598 (1212)
Q Consensus 523 ~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~----~d~~~~itR~ 598 (1212)
.|||++||.+|++|+.++|.. +.+.++..+++++.||+.+||++|+.||.+.++.+.+++++.+ .++++.|||+
T Consensus 220 ~LGG~dfD~~l~~~l~~~f~~--~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~ 297 (653)
T PRK13411 220 HLGGDDFDNCIVDWLVENFQQ--QEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRA 297 (653)
T ss_pred CcCHHHHHHHHHHHHHHHHHH--hhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHH
Confidence 999999999999999999987 4456888899999999999999999999999999999887643 5789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhC-CcccCCCCchhHHHhhHHHHHHhh
Q psy18164 599 EFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG-VELSKNLNTDEAAALGAVYKAADL 677 (1212)
Q Consensus 599 efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg-~~i~~~~n~deaVA~GAa~~aa~l 677 (1212)
+||++|+|+++++..+|+++|+++++..++|+.|+||||+||||+||+.|+++|| ..+..++|||+|||+|||++|+++
T Consensus 298 ~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l 377 (653)
T PRK13411 298 KFEELTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVL 377 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999998 688899999999999999999999
Q ss_pred cCCcccceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccC---ceEEEEEeccCcccCChh
Q psy18164 678 STGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVG---DFNFNVSYASEIEHLNPE 754 (1212)
Q Consensus 678 s~~fkv~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~---~~~i~i~~g~~~~~~~~~ 754 (1212)
++. ++++.+.|++||+|||++. ++ .+.+||++|+++|++++.+|.+..+ .+.|.+|+| +.....
T Consensus 378 ~~~--~~~~~~~dv~p~slgi~~~-----~~---~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~g-e~~~~~-- 444 (653)
T PRK13411 378 GGE--VKDLLLLDVTPLSLGIETL-----GE---VFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQG-ERAMAK-- 444 (653)
T ss_pred cCC--ccceeeeecccceeeEEec-----CC---ceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEe-cCcccc--
Confidence 986 7899999999999999886 22 3678999999999999999987544 389999999 764322
Q ss_pred hhhccCceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccccCC
Q psy18164 755 QIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRS 834 (1212)
Q Consensus 755 ~~~~~~~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~~~ 834 (1212)
.+..|+.+.+.|+++++++. ++|+|+|++|.||+|+|++.+. .+
T Consensus 445 -----~n~~lg~~~l~~i~~~~~g~-------~~i~v~f~id~~Gil~v~a~d~---------~t--------------- 488 (653)
T PRK13411 445 -----DNKSLGKFLLTGIPPAPRGV-------PQIEVSFEIDVNGILKVSAQDQ---------GT--------------- 488 (653)
T ss_pred -----cCceeeEEEEcCCCCCCCCC-------ccEEEEEEECCCCeEEEEEeec---------cC---------------
Confidence 34568899999999875543 6899999999999999987630 00
Q ss_pred CCCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHHHH
Q psy18164 835 KTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQV 914 (1212)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~eel 914 (1212)
.+++. +.+. ...+||.+++
T Consensus 489 -----------------------------------------------------~~~~~----~~i~----~~~~ls~~ei 507 (653)
T PRK13411 489 -----------------------------------------------------GREQS----IRIT----NTGGLSSNEI 507 (653)
T ss_pred -----------------------------------------------------CceEe----eEEe----ccccchHHHH
Confidence 00011 1111 1246999999
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHH
Q psy18164 915 EKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLEN 994 (1212)
Q Consensus 915 ~~~~~~l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~~~ 994 (1212)
+++++++.+|..+|+.++++.+++|+||+|||++|++|. ++..++++++|+++.+.|+++++|||+ .+++.++|++
T Consensus 508 ~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~--~~~~~~~~~er~~i~~~l~~~~~wL~~--~~~~~~~~~~ 583 (653)
T PRK13411 508 ERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTLK--ENGELISEELKQRAEQKVEQLEAALTD--PNISLEELKQ 583 (653)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HhhccCCHHHHHHHHHHHHHHHHHHhc--CCCCHHHHHH
Confidence 999999999999999999999999999999999999995 368899999999999999999999996 4578999999
Q ss_pred HHHHHHHhhHHHHHHHH
Q psy18164 995 KLNEINSLVVPIWERHR 1011 (1212)
Q Consensus 995 Kl~eL~~~~~pi~~R~~ 1011 (1212)
++++|++.+.++..+++
T Consensus 584 ~~~el~~~~~~i~~~~y 600 (653)
T PRK13411 584 QLEEFQQALLAIGAEVY 600 (653)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998765
|
|
| >PRK00290 dnaK molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-90 Score=864.53 Aligned_cols=587 Identities=28% Similarity=0.434 Sum_probs=522.7
Q ss_pred eEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEe-cCcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCHH
Q psy18164 284 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 362 (1212)
Q Consensus 284 ~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~-~~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~~ 362 (1212)
.|||||||||||+||++++| .++++.|.+|+|.+||+|+|. +++++||..|..++.++|.++++++|||||+. ++.
T Consensus 3 ~viGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~~ 79 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVMEGG-EPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--DEE 79 (627)
T ss_pred cEEEEEeCcccEEEEEEECC-EEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--chH
Confidence 48999999999999999998 567999999999999999996 77899999999999999999999999999998 677
Q ss_pred HHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHHH
Q psy18164 363 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 442 (1212)
Q Consensus 363 v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~Aa 442 (1212)
++.+.+++||..+..+ ++...+.+++ ..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||
T Consensus 80 ~~~~~~~~p~~~~~~~--~~~~~~~~~~-~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa 156 (627)
T PRK00290 80 VQKDIKLVPYKIVKAD--NGDAWVEIDG-KKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAG 156 (627)
T ss_pred HHHHhhcCCeEEEEcC--CCceEEEECC-EEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHH
Confidence 8888899999766543 3445566654 789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCC
Q psy18164 443 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 522 (1212)
Q Consensus 443 ~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~ 522 (1212)
++|||++++||+||+|||++|+..+. . ++++|||||||||||+||+++. .+.+++++++++.
T Consensus 157 ~~AGl~v~~li~EptAAAl~y~~~~~-----~-~~~vlV~D~GggT~dvsv~~~~------------~~~~~vla~~gd~ 218 (627)
T PRK00290 157 KIAGLEVLRIINEPTAAALAYGLDKK-----G-DEKILVYDLGGGTFDVSILEIG------------DGVFEVLSTNGDT 218 (627)
T ss_pred HHcCCceEEEecchHHHHHHhhhccC-----C-CCEEEEEECCCCeEEEEEEEEe------------CCeEEEEEecCCC
Confidence 99999999999999999999988652 2 6899999999999999999986 3489999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccC----cceEEEEeHH
Q psy18164 523 TLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDE----IDFKLLVTRA 598 (1212)
Q Consensus 523 ~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~----~d~~~~itR~ 598 (1212)
.+||.+||.+|++|+.++|+. +++.++..+++++.||+.+||++|+.||.+.++.+.++.++.+ .++.+.|||+
T Consensus 219 ~lGG~d~D~~l~~~~~~~~~~--~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~ 296 (627)
T PRK00290 219 HLGGDDFDQRIIDYLADEFKK--ENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRA 296 (627)
T ss_pred CcChHHHHHHHHHHHHHHHHH--hhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHH
Confidence 999999999999999999988 4456788899999999999999999999999999999988653 6899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhc
Q psy18164 599 EFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 678 (1212)
Q Consensus 599 efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls 678 (1212)
+||++|+++++++..+|+++|+++++...+|+.|+||||+||||+||+.|+++||.++..++|||+|||+|||++|++++
T Consensus 297 ~fe~l~~~l~~~~~~~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeava~GAa~~aa~l~ 376 (627)
T PRK00290 297 KFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAAIQGGVLA 376 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHhCCCCCcCcCChHHHHHhHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred CCcccceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccCc---eEEEEEeccCcccCChhh
Q psy18164 679 TGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQ 755 (1212)
Q Consensus 679 ~~fkv~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~ 755 (1212)
+ +++++.+.|++||+|||++. ++ .+.+||++|+++|++++.+|.+..++ +.|.+||| +.....
T Consensus 377 ~--~~~~~~~~d~~~~slgi~~~----~~----~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~g-e~~~~~--- 442 (627)
T PRK00290 377 G--DVKDVLLLDVTPLSLGIETL----GG----VMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQG-EREMAA--- 442 (627)
T ss_pred C--CccceeeeeccceEEEEEec----CC----eEEEEecCCCcCCccceEEEEecCCCcceEEEEEEEe-cccccC---
Confidence 8 47889999999999999876 22 36789999999999999999876443 89999999 754322
Q ss_pred hhccCceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccccCCC
Q psy18164 756 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSK 835 (1212)
Q Consensus 756 ~~~~~~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~~~~ 835 (1212)
.+..|+++.|+|+++++++. +.|+++|++|.||+|+|++.+. .+
T Consensus 443 ----~~~~lg~~~i~~~~~~~~g~-------~~i~v~f~~d~~gil~v~a~~~---------~~---------------- 486 (627)
T PRK00290 443 ----DNKSLGRFNLTGIPPAPRGV-------PQIEVTFDIDANGIVHVSAKDK---------GT---------------- 486 (627)
T ss_pred ----cCceEEEEEECCCCCCCCCC-------ceEEEEEEECCCceEEEEEEEc---------cC----------------
Confidence 34568899999998775443 5799999999999999987630 00
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHHHHH
Q psy18164 836 TDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVE 915 (1212)
Q Consensus 836 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~eel~ 915 (1212)
.+... +.+. ...+|+.++++
T Consensus 487 ----------------------------------------------------~~~~~----~~i~----~~~~ls~e~i~ 506 (627)
T PRK00290 487 ----------------------------------------------------GKEQS----ITIT----ASSGLSDEEIE 506 (627)
T ss_pred ----------------------------------------------------CceeE----EEec----cccccCHHHHH
Confidence 00001 1111 22469999999
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHH
Q psy18164 916 KSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENK 995 (1212)
Q Consensus 916 ~~~~~l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~~~K 995 (1212)
++++++.+|...|+.++++.+++|+||+|+|.+|++|. ++..++++++|++|.+.|+++++|||++ +.+.|++|
T Consensus 507 ~~~~~~~~~~~~d~~~~~~~eakN~le~~i~~~~~~l~--~~~~~~~~~e~~~i~~~l~~~~~wL~~~----~~~~i~~k 580 (627)
T PRK00290 507 RMVKDAEANAEEDKKRKELVEARNQADSLIYQTEKTLK--ELGDKVPADEKEKIEAAIKELKEALKGE----DKEAIKAK 580 (627)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH--HHhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHH
Confidence 99999999999999999999999999999999999995 5888999999999999999999999965 67899999
Q ss_pred HHHHHHhhHHHHHHHHh
Q psy18164 996 LNEINSLVVPIWERHRE 1012 (1212)
Q Consensus 996 l~eL~~~~~pi~~R~~e 1012 (1212)
+++|+++++++..|+++
T Consensus 581 ~~~L~~~~~~~~~~~~~ 597 (627)
T PRK00290 581 TEELTQASQKLGEAMYQ 597 (627)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998754
|
|
| >PLN03184 chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-90 Score=860.26 Aligned_cols=588 Identities=26% Similarity=0.415 Sum_probs=515.2
Q ss_pred ceEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEe-cCcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCH
Q psy18164 283 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 361 (1212)
Q Consensus 283 ~~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~-~~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~ 361 (1212)
.+|||||||||||+||++.+| .+++++|.+|+|.+||+|+|. ++++++|..|..++.++|.++++++|||||+.+++
T Consensus 39 ~~viGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d- 116 (673)
T PLN03184 39 EKVVGIDLGTTNSAVAAMEGG-KPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE- 116 (673)
T ss_pred CCEEEEEeCcCcEEEEEEECC-eEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch-
Confidence 358999999999999999999 567999999999999999996 46899999999999999999999999999999876
Q ss_pred HHHhhhhcCCceeeecCCCcceEEEEcC-CceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHH
Q psy18164 362 VVQLFKSRFPYYDIVADEERGTIVFKTN-DNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLK 440 (1212)
Q Consensus 362 ~v~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~ 440 (1212)
++...+.+||..+..+ ++.+.+.+. .+..|+|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++
T Consensus 117 -~~~~~~~~~~~v~~~~--~~~v~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~ 193 (673)
T PLN03184 117 -VDEESKQVSYRVVRDE--NGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKD 193 (673)
T ss_pred -hhhhhhcCCeEEEecC--CCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHH
Confidence 5566778888765443 344555442 346899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEec
Q psy18164 441 AGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGY 520 (1212)
Q Consensus 441 Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~ 520 (1212)
||++|||++++||+||+|||++|+..... +.++|||||||||||+||+++. .+.++|+++.|
T Consensus 194 Aa~~AGl~v~~li~EPtAAAlayg~~~~~------~~~vlV~DlGgGT~DvSi~~~~------------~~~~eVla~~g 255 (673)
T PLN03184 194 AGRIAGLEVLRIINEPTAASLAYGFEKKS------NETILVFDLGGGTFDVSVLEVG------------DGVFEVLSTSG 255 (673)
T ss_pred HHHHCCCCeEEEeCcHHHHHHHhhcccCC------CCEEEEEECCCCeEEEEEEEec------------CCEEEEEEecC
Confidence 99999999999999999999999986532 5789999999999999999985 34899999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeeccc----CcceEEEEe
Q psy18164 521 DRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLID----EIDFKLLVT 596 (1212)
Q Consensus 521 d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~----~~d~~~~it 596 (1212)
|.+|||++||.+|++|+.++|.. +.+.++..+++++.||+.+||++|+.||.+.++.+.++++.. +.++++.||
T Consensus 256 d~~LGG~dfD~~L~~~~~~~f~~--~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~it 333 (673)
T PLN03184 256 DTHLGGDDFDKRIVDWLASNFKK--DEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLT 333 (673)
T ss_pred CCccCHHHHHHHHHHHHHHHHHh--hcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEEC
Confidence 99999999999999999999988 455678889999999999999999999999999999987653 367999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHh
Q psy18164 597 RAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAAD 676 (1212)
Q Consensus 597 R~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ 676 (1212)
|++||++|+++++++..+|+++|+++++.+++|+.|+||||+||||+||+.|+++||..+..++|||||||+|||++|++
T Consensus 334 R~~fe~l~~~l~~r~~~~i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaVA~GAAi~aa~ 413 (673)
T PLN03184 334 RAKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGV 413 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHhCCCcccccCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988889999999999999999999
Q ss_pred hcCCcccceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccC---ceEEEEEeccCcccCCh
Q psy18164 677 LSTGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVG---DFNFNVSYASEIEHLNP 753 (1212)
Q Consensus 677 ls~~fkv~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~---~~~i~i~~g~~~~~~~~ 753 (1212)
+++. ++++.+.|++||+|||++. ++ .+.+||++|+++|++++.+|.+..+ .+.|.+|+| +.....
T Consensus 414 ls~~--~~~~~~~dv~p~slgi~~~-----~~---~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~g-e~~~~~- 481 (673)
T PLN03184 414 LAGE--VSDIVLLDVTPLSLGLETL-----GG---VMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQG-EREFVR- 481 (673)
T ss_pred hccC--ccceEEEecccccceEEec-----CC---eeEEEEeCCCccceecceEeeeecCCCcEEEEEEEee-cccccc-
Confidence 9984 6789999999999999986 22 3678999999999999999987644 378899999 765332
Q ss_pred hhhhccCceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccccC
Q psy18164 754 EQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSR 833 (1212)
Q Consensus 754 ~~~~~~~~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~~ 833 (1212)
.+..|+++.|+|+++++++. +.|+|+|++|.||+|+|++.+. .+
T Consensus 482 ------~n~~lg~~~i~~i~~~~~g~-------~~i~v~f~id~~GiL~V~a~~~---------~t-------------- 525 (673)
T PLN03184 482 ------DNKSLGSFRLDGIPPAPRGV-------PQIEVKFDIDANGILSVSATDK---------GT-------------- 525 (673)
T ss_pred ------cCceEEEEEEeCCCCCCCCC-------ceEEEEEEeCCCCeEEEEEEec---------CC--------------
Confidence 24568889999998775443 5799999999999999998730 00
Q ss_pred CCCCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHHH
Q psy18164 834 SKTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQ 913 (1212)
Q Consensus 834 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~ee 913 (1212)
.++.. +.++ ...+||.++
T Consensus 526 ------------------------------------------------------~~~~~----~~i~----~~~~ls~ee 543 (673)
T PLN03184 526 ------------------------------------------------------GKKQD----ITIT----GASTLPKDE 543 (673)
T ss_pred ------------------------------------------------------CeEEE----EEec----ccccccHHH
Confidence 00111 1111 234699999
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q psy18164 914 VEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLE 993 (1212)
Q Consensus 914 l~~~~~~l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~~ 993 (1212)
++++++++.+|..+|+.++++++++|+||+|||++|++|. +|..++++++|++|.+.|+++++|||++ +.+.++
T Consensus 544 i~~~~~~~~~~~~~D~~~~~~~eakN~lE~~iy~~r~~l~--e~~~~~~~eer~~l~~~l~~~e~wL~~~----d~~~ik 617 (673)
T PLN03184 544 VERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQLK--ELGDKVPADVKEKVEAKLKELKDAIASG----STQKMK 617 (673)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHH--HHhhhCCHHHHHHHHHHHHHHHHHHhcC----CHHHHH
Confidence 9999999999999999999999999999999999999995 4889999999999999999999999965 456788
Q ss_pred HHHHHHHHhhHHHHHHHH
Q psy18164 994 NKLNEINSLVVPIWERHR 1011 (1212)
Q Consensus 994 ~Kl~eL~~~~~pi~~R~~ 1011 (1212)
+++++|.+..+++..+++
T Consensus 618 ~~~~~l~~~l~~l~~~~~ 635 (673)
T PLN03184 618 DAMAALNQEVMQIGQSLY 635 (673)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888888776543
|
|
| >PTZ00186 heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-90 Score=847.58 Aligned_cols=589 Identities=25% Similarity=0.366 Sum_probs=523.2
Q ss_pred ceEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEecCcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCHH
Q psy18164 283 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 362 (1212)
Q Consensus 283 ~~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~~ 362 (1212)
..+||||||||||+||++.+| .++++.|..|.|.+||+|+|.++++++|..|+.++.++|.++++++||+||+.++++.
T Consensus 27 ~~viGIDLGTTnS~vA~~~~~-~~~ii~n~~g~r~tPS~V~f~~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~ 105 (657)
T PTZ00186 27 GDVIGVDLGTTYSCVATMDGD-KARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEH 105 (657)
T ss_pred ceEEEEEeCcCeEEEEEEeCC-ceEEeecCCCCcccceEEEECCCCEEEcHHHHHhhhhCchhHHHHHHHHhccccccHH
Confidence 459999999999999999988 7889999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHHH
Q psy18164 363 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 442 (1212)
Q Consensus 363 v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~Aa 442 (1212)
++...+.+||..+... .+...+...++..|+|+++++++|++|+..|+.+++.++.++|||||+||++.||+++++||
T Consensus 106 v~~~~~~~p~~vv~~~--~~~~~i~~~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa 183 (657)
T PTZ00186 106 IQKDIKNVPYKIVRAG--NGDAWVQDGNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAG 183 (657)
T ss_pred HHHhhccCcEEEEEcC--CCceEEEeCCCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHH
Confidence 9999999999766443 33445555556889999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCC
Q psy18164 443 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 522 (1212)
Q Consensus 443 ~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~ 522 (1212)
++|||++++||+||+|||++|+..... ++++|||||||||||+||+++. .+.++|+++.||.
T Consensus 184 ~~AGl~v~rlInEPtAAAlayg~~~~~------~~~vlV~DlGGGT~DvSil~~~------------~g~~~V~at~Gd~ 245 (657)
T PTZ00186 184 TIAGLNVIRVVNEPTAAALAYGMDKTK------DSLIAVYDLGGGTFDISVLEIA------------GGVFEVKATNGDT 245 (657)
T ss_pred HHcCCCeEEEEcChHHHHHHHhccCCC------CCEEEEEECCCCeEEEEEEEEe------------CCEEEEEEecCCC
Confidence 999999999999999999999975432 6899999999999999999986 3489999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccC----cceEEEEeHH
Q psy18164 523 TLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDE----IDFKLLVTRA 598 (1212)
Q Consensus 523 ~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~----~d~~~~itR~ 598 (1212)
+|||++||.+|++|+.++|+. +++.|+..+++++.+|+.+||++|+.||.+.++.+.++.+..+ .++.+.|||+
T Consensus 246 ~LGG~DfD~~l~~~~~~~f~~--~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~ 323 (657)
T PTZ00186 246 HLGGEDFDLALSDYILEEFRK--TSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRS 323 (657)
T ss_pred CCCchhHHHHHHHHHHHHHhh--hcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHH
Confidence 999999999999999999988 4556888899999999999999999999999999999876542 4689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhc
Q psy18164 599 EFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 678 (1212)
Q Consensus 599 efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls 678 (1212)
+||++|+++++++..+++++|++++++..+|+.|+||||+||||.||++|+++||.++..++|||||||+|||++|++++
T Consensus 324 efe~l~~~l~~r~~~~v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAAi~a~~l~ 403 (657)
T PTZ00186 324 KFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLR 403 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999998888999999999999999999999
Q ss_pred CCcccceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccCc---eEEEEEeccCcccCChhh
Q psy18164 679 TGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQ 755 (1212)
Q Consensus 679 ~~fkv~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~ 755 (1212)
+. ++++.+.|++||+|||++. ++ .+.+||++|+++|++++.+|++..++ +.|.|||| +.....
T Consensus 404 ~~--~~~~~l~Dv~p~slgie~~-----~g---~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qG-e~~~~~--- 469 (657)
T PTZ00186 404 GD--VKGLVLLDVTPLSLGIETL-----GG---VFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQG-EREMAA--- 469 (657)
T ss_pred cc--cCceEEEeeccccccceec-----CC---EEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEe-cccccc---
Confidence 85 6789999999999999986 32 37799999999999999999887553 99999999 765322
Q ss_pred hhccCceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccccCCC
Q psy18164 756 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSK 835 (1212)
Q Consensus 756 ~~~~~~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~~~~ 835 (1212)
.+..|+++.|.|+++++++. +.|+|+|++|.||+|+|++.+. .|.
T Consensus 470 ----~n~~lg~~~l~~ip~~~~G~-------~~I~Vtf~iD~nGiL~V~a~d~---------~tg--------------- 514 (657)
T PTZ00186 470 ----DNQMMGQFDLVGIPPAPRGV-------PQIEVTFDIDANGICHVTAKDK---------ATG--------------- 514 (657)
T ss_pred ----cccccceEEEcCCCCCCCCC-------CcEEEEEEEcCCCEEEEEEEEc---------cCC---------------
Confidence 24457788999999886554 6899999999999999998741 000
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHHHHH
Q psy18164 836 TDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVE 915 (1212)
Q Consensus 836 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~eel~ 915 (1212)
+... +.++ ....|++++++
T Consensus 515 -----------------------------------------------------~~~~----~~i~----~~~~ls~~~i~ 533 (657)
T PTZ00186 515 -----------------------------------------------------KTQN----ITIT----ANGGLSKEQIE 533 (657)
T ss_pred -----------------------------------------------------cEEE----EEec----cCccCCHHHHH
Confidence 0001 1111 22359999999
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHH
Q psy18164 916 KSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENK 995 (1212)
Q Consensus 916 ~~~~~l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~~~K 995 (1212)
++.+...+....|+.++++.+++|.+|+++|.++..+.+ . ..+++++++.+...++..++||. +.+.+.+.++++
T Consensus 534 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~ 608 (657)
T PTZ00186 534 QMIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQLGE--W-KYVSDAEKENVKTLVAELRKAME--NPNVAKDDLAAA 608 (657)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh--h-ccCCHHHHHHHHHHHHHHHHHHh--cCCcCHHHHHHH
Confidence 999999999999999999999999999999999999953 2 46899999999999999999997 345577999999
Q ss_pred HHHHHHhhHHHHHH
Q psy18164 996 LNEINSLVVPIWER 1009 (1212)
Q Consensus 996 l~eL~~~~~pi~~R 1009 (1212)
+++|++.+.++..+
T Consensus 609 ~~~l~~~~~~~~~~ 622 (657)
T PTZ00186 609 TDKLQKAVMECGRT 622 (657)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
|
|
| >TIGR02350 prok_dnaK chaperone protein DnaK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-89 Score=851.29 Aligned_cols=584 Identities=29% Similarity=0.442 Sum_probs=517.6
Q ss_pred EEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEec-CcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCHHH
Q psy18164 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVV 363 (1212)
Q Consensus 285 vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~-~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~~v 363 (1212)
|||||||||||+||++++| .++++.|.+|+|.+||+|+|.+ +++++|..|..++.++|.++++++|||||+.++ .+
T Consensus 2 viGIDlGtt~s~va~~~~g-~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~--~~ 78 (595)
T TIGR02350 2 IIGIDLGTTNSCVAVMEGG-EPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFD--EV 78 (595)
T ss_pred EEEEEeCcccEEEEEEECC-EEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCch--HH
Confidence 7999999999999999999 5569999999999999999975 489999999999999999999999999999984 47
Q ss_pred HhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHHHH
Q psy18164 364 QLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGE 443 (1212)
Q Consensus 364 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~Aa~ 443 (1212)
+.+.+++||. +..+ ++.+.+.+++ ..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||+
T Consensus 79 ~~~~~~~~~~-v~~~--~~~~~~~v~~-~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa~ 154 (595)
T TIGR02350 79 TEEAKRVPYK-VVGD--GGDVRVKVDG-KEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGK 154 (595)
T ss_pred HHHhhcCCee-EEcC--CCceEEEECC-EEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 7788899997 4332 4556677664 7899999999999999999999999999999999999999999999999999
Q ss_pred HcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCC
Q psy18164 444 LAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 523 (1212)
Q Consensus 444 ~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~ 523 (1212)
+|||++++||+||+|||++|+..+.. . ++++|||||||||||+||+++. .+.++|++++|+..
T Consensus 155 ~AGl~v~~li~EptAAAl~y~~~~~~----~-~~~vlV~D~Gggt~dvsv~~~~------------~~~~~v~~~~gd~~ 217 (595)
T TIGR02350 155 IAGLEVLRIINEPTAAALAYGLDKSK----K-DEKILVFDLGGGTFDVSILEIG------------DGVFEVLSTAGDTH 217 (595)
T ss_pred HcCCceEEEecchHHHHHHHhhcccC----C-CcEEEEEECCCCeEEEEEEEec------------CCeEEEEEecCCcc
Confidence 99999999999999999999886532 2 6899999999999999999986 34899999999999
Q ss_pred CChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccC----cceEEEEeHHH
Q psy18164 524 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDE----IDFKLLVTRAE 599 (1212)
Q Consensus 524 lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~----~d~~~~itR~e 599 (1212)
+||++||.+|++|+.++|..+ ++.++..+++++.||+.+||++|+.||.+.++.+.++.++.+ .++.+.|||++
T Consensus 218 lGG~d~D~~l~~~~~~~~~~~--~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~ 295 (595)
T TIGR02350 218 LGGDDFDQRIIDWLADEFKKE--EGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAK 295 (595)
T ss_pred cCchhHHHHHHHHHHHHHHHh--hCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHH
Confidence 999999999999999999984 456888899999999999999999999999999999887643 57899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcC
Q psy18164 600 FEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLST 679 (1212)
Q Consensus 600 fe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~ 679 (1212)
||++|+|+++++..+|+++|+++++++.+|+.|+||||+||||+||+.|+++||.++..++|||+|||+|||++||++++
T Consensus 296 fe~l~~~l~~~~~~~i~~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~GAa~~aa~l~~ 375 (595)
T TIGR02350 296 FEELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQGGVLKG 375 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999998
Q ss_pred CcccceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccCc---eEEEEEeccCcccCChhhh
Q psy18164 680 GFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQI 756 (1212)
Q Consensus 680 ~fkv~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~~ 756 (1212)
. ++++.+.|++||+||+++. ++ .+.+||++|+++|++++.+|.+..++ +.|.+|+| +.....
T Consensus 376 ~--~~~~~~~d~~~~~igi~~~----~~----~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~g-e~~~~~---- 440 (595)
T TIGR02350 376 D--VKDVLLLDVTPLSLGIETL----GG----VMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQG-ERPMAA---- 440 (595)
T ss_pred C--cccceeeecccceeEEEec----CC----ceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEee-cccccc----
Confidence 6 7889999999999999886 23 26789999999999999999876443 89999999 654322
Q ss_pred hccCceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccccCCCC
Q psy18164 757 AMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKT 836 (1212)
Q Consensus 757 ~~~~~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~~~~~ 836 (1212)
.+..|+++.+.|+++++++. ++|+++|++|.||+|+|++.+.. +
T Consensus 441 ---~~~~lg~~~i~~~~~~~~g~-------~~i~v~f~~d~~G~l~v~~~~~~---------~----------------- 484 (595)
T TIGR02350 441 ---DNKSLGRFELTGIPPAPRGV-------PQIEVTFDIDANGILHVSAKDKG---------T----------------- 484 (595)
T ss_pred ---cCcEeEEEEECCCCCCCCCC-------ceEEEEEEEcCCCeEEEEEEEcc---------C-----------------
Confidence 34568899999998774433 57999999999999999877310 0
Q ss_pred CCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHHHHHH
Q psy18164 837 DENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEK 916 (1212)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~eel~~ 916 (1212)
.++.. +.++ ...+||.+++++
T Consensus 485 ---------------------------------------------------~~~~~----~~i~----~~~~ls~~~~~~ 505 (595)
T TIGR02350 485 ---------------------------------------------------GKEQS----ITIT----ASSGLSEEEIER 505 (595)
T ss_pred ---------------------------------------------------CceEE----EEec----cccccCHHHHHH
Confidence 00001 1111 124699999999
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHH
Q psy18164 917 SLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKL 996 (1212)
Q Consensus 917 ~~~~l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~~~Kl 996 (1212)
+++++.+|...|+.++++.+++|.||+|||++|++|+ ++..++++++|++|.+.++++++|||++ +..+|++++
T Consensus 506 ~~~~~~~~~~~D~~~~~~~e~kn~lEs~iy~~r~~l~--~~~~~~~~~e~~~l~~~l~~~~~wL~~~----d~~~i~~~~ 579 (595)
T TIGR02350 506 MVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTLK--EAGDKLPAEEKEKIEKAVAELKEALKGE----DVEEIKAKT 579 (595)
T ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH--HhhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHH
Confidence 9999999999999999999999999999999999995 3688999999999999999999999964 678999999
Q ss_pred HHHHHhhHHHHHHH
Q psy18164 997 NEINSLVVPIWERH 1010 (1212)
Q Consensus 997 ~eL~~~~~pi~~R~ 1010 (1212)
++|+++++++..++
T Consensus 580 ~~l~~~~~~~~~~~ 593 (595)
T TIGR02350 580 EELQQALQKLAEAM 593 (595)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988754
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved. |
| >CHL00094 dnaK heat shock protein 70 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-89 Score=846.80 Aligned_cols=587 Identities=28% Similarity=0.409 Sum_probs=516.0
Q ss_pred eEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEec-CcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCHH
Q psy18164 284 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 362 (1212)
Q Consensus 284 ~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~-~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~~ 362 (1212)
.|||||||||||+||++++| .++++.|..|+|.+||+|+|.+ +++++|..|+.++.++|.++++++||+||+.+++
T Consensus 3 ~viGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~-- 79 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVMEGG-KPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE-- 79 (621)
T ss_pred ceEEEEeCcccEEEEEEECC-EEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH--
Confidence 58999999999999999999 5679999999999999999964 6799999999999999999999999999999865
Q ss_pred HHhhhhcCCceeeecCCCcceEEEEcC-CceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHH
Q psy18164 363 VQLFKSRFPYYDIVADEERGTIVFKTN-DNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 441 (1212)
Q Consensus 363 v~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~A 441 (1212)
++...+.+||.....+ ++.+.+... .+..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++|
T Consensus 80 ~~~~~~~~~~~v~~~~--~g~i~~~~~~~~~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~A 157 (621)
T CHL00094 80 ISEEAKQVSYKVKTDS--NGNIKIECPALNKDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDA 157 (621)
T ss_pred HHhhhhcCCeEEEECC--CCCEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 5566677888655433 344555432 3468999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecC
Q psy18164 442 GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYD 521 (1212)
Q Consensus 442 a~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d 521 (1212)
|++|||++++||+||+|||++|+..... +.++|||||||||||+||+++. .+.++|++++++
T Consensus 158 a~~AGl~v~~li~EptAAAlay~~~~~~------~~~vlV~DlGgGT~DvSv~~~~------------~~~~~vla~~gd 219 (621)
T CHL00094 158 GKIAGLEVLRIINEPTAASLAYGLDKKN------NETILVFDLGGGTFDVSILEVG------------DGVFEVLSTSGD 219 (621)
T ss_pred HHHcCCceEEEeccHHHHHHHhccccCC------CCEEEEEEcCCCeEEEEEEEEc------------CCEEEEEEEecC
Confidence 9999999999999999999999876432 5789999999999999999985 348999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeeccc----CcceEEEEeH
Q psy18164 522 RTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLID----EIDFKLLVTR 597 (1212)
Q Consensus 522 ~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~----~~d~~~~itR 597 (1212)
..+||++||.+|++|+.++|.. +++.++..+++++.+|+.+||++|+.||.+.++.+.++++.+ +.++...|||
T Consensus 220 ~~lGG~d~D~~l~~~~~~~~~~--~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR 297 (621)
T CHL00094 220 THLGGDDFDKKIVNWLIKEFKK--KEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTR 297 (621)
T ss_pred CCcChHHHHHHHHHHHHHHHHH--HhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcH
Confidence 9999999999999999999988 445678889999999999999999999999999999988764 2578999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhh
Q psy18164 598 AEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADL 677 (1212)
Q Consensus 598 ~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~l 677 (1212)
++||++|+++++++..+|+++|+++++...+|+.|+||||+||||.||+.|+++||.++..++|||||||+|||++|+++
T Consensus 298 ~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeava~GAA~~aa~l 377 (621)
T CHL00094 298 AKFEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVL 377 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHhCCCcCcCCCchhHHHhhhHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred cCCcccceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEecc---CceEEEEEeccCcccCChh
Q psy18164 678 STGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYV---GDFNFNVSYASEIEHLNPE 754 (1212)
Q Consensus 678 s~~fkv~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~---~~~~i~i~~g~~~~~~~~~ 754 (1212)
++. ++++.+.|++||+||+++. ++ .+.+||++|+++|++++.+|.+.. .++.|.||+| +.....
T Consensus 378 s~~--~~~~~~~d~~~~~lgi~~~-----~~---~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~g-e~~~~~-- 444 (621)
T CHL00094 378 AGE--VKDILLLDVTPLSLGVETL-----GG---VMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQG-ERELAK-- 444 (621)
T ss_pred cCC--ccceeeeeeeceeeeeecc-----CC---EEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEee-ccccCC--
Confidence 984 6889999999999999876 22 377999999999999999998753 3599999999 764322
Q ss_pred hhhccCceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccccCC
Q psy18164 755 QIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRS 834 (1212)
Q Consensus 755 ~~~~~~~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~~~ 834 (1212)
.+..|+++.|.|+++++++. +.|+++|++|.+|+|+|++.+. .+.
T Consensus 445 -----~n~~lg~~~i~~~~~~~~g~-------~~i~v~f~id~~Gil~v~~~~~---------~t~-------------- 489 (621)
T CHL00094 445 -----DNKSLGTFRLDGIPPAPRGV-------PQIEVTFDIDANGILSVTAKDK---------GTG-------------- 489 (621)
T ss_pred -----CCCEEEEEEEeCCCCCCCCC-------CcEEEEEEECCCCeEEEEEeec---------cCC--------------
Confidence 24568889999998764433 5799999999999999998731 000
Q ss_pred CCCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHHHH
Q psy18164 835 KTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQV 914 (1212)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~eel 914 (1212)
+... +.+. ...+|+.+++
T Consensus 490 ------------------------------------------------------~~~~----~~i~----~~~~ls~~~i 507 (621)
T CHL00094 490 ------------------------------------------------------KEQS----ITIQ----GASTLPKDEV 507 (621)
T ss_pred ------------------------------------------------------ceee----eeec----cchhccHHHH
Confidence 0000 1111 2346999999
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHH
Q psy18164 915 EKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLEN 994 (1212)
Q Consensus 915 ~~~~~~l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~~~ 994 (1212)
+++++++.+|...|+.++++.+++|.||+|||.+|++|+ ++..++++++|++|.+.++++++|||++ ..+.|++
T Consensus 508 ~~~~~~~~~~~~~d~~~~~~~~~kn~le~~i~~~~~~l~--~~~~~~~~~~~~~~~~~l~~~~~wl~~~----~~~~~~~ 581 (621)
T CHL00094 508 ERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQLK--ELKDKISEEKKEKIENLIKKLRQALQND----NYESIKS 581 (621)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHhHHHHHHHHHHHH--HHhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHH
Confidence 999999999999999999999999999999999999996 3889999999999999999999999976 4579999
Q ss_pred HHHHHHHhhHHHHHHHH
Q psy18164 995 KLNEINSLVVPIWERHR 1011 (1212)
Q Consensus 995 Kl~eL~~~~~pi~~R~~ 1011 (1212)
++++|+++++++..+++
T Consensus 582 ~~~~l~~~~~~~~~kl~ 598 (621)
T CHL00094 582 LLEELQKALMEIGKEVY 598 (621)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999987543
|
|
| >TIGR01991 HscA Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-86 Score=815.02 Aligned_cols=577 Identities=24% Similarity=0.338 Sum_probs=508.0
Q ss_pred EEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEec-CcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCHHH
Q psy18164 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVV 363 (1212)
Q Consensus 285 vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~-~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~~v 363 (1212)
+||||||||||+||++.+| .++++.|..|+|.+||+|+|.+ +++++|..|+.++.++|.++++++|||||+.+++..
T Consensus 1 ~iGIDlGTtns~va~~~~g-~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~- 78 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSG-VPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIK- 78 (599)
T ss_pred CEEEEEccccEEEEEEECC-EEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchh-
Confidence 5899999999999999998 6789999999999999999975 489999999999999999999999999999987743
Q ss_pred HhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHHHH
Q psy18164 364 QLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGE 443 (1212)
Q Consensus 364 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~Aa~ 443 (1212)
. .+.+||..... .++.+.+...++ .++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||+
T Consensus 79 -~-~~~~~~~~~~~--~~~~~~~~~~~~-~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~ 153 (599)
T TIGR01991 79 -T-FSILPYRFVDG--PGEMVRLRTVQG-TVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAAR 153 (599)
T ss_pred -h-cccCCEEEEEc--CCCceEEEeCCC-EEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHH
Confidence 2 56678864432 235567766554 799999999999999999999999999999999999999999999999999
Q ss_pred HcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCC
Q psy18164 444 LAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 523 (1212)
Q Consensus 444 ~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~ 523 (1212)
+|||++++||+||+|||++|++.+.. ++++|||||||||||+||+++. .+.++|++++++..
T Consensus 154 ~AGl~v~~li~EPtAAAlay~~~~~~------~~~vlV~DlGgGT~DvSi~~~~------------~~~~~vla~~gd~~ 215 (599)
T TIGR01991 154 LAGLNVLRLLNEPTAAAVAYGLDKAS------EGIYAVYDLGGGTFDVSILKLT------------KGVFEVLATGGDSA 215 (599)
T ss_pred HcCCCceEEecCHHHHHHHHhhccCC------CCEEEEEEcCCCeEEEEEEEEc------------CCeEEEEEEcCCCC
Confidence 99999999999999999999976532 6889999999999999999986 34799999999999
Q ss_pred CChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccCcceEEEEeHHHHHHH
Q psy18164 524 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEAL 603 (1212)
Q Consensus 524 lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~~d~~~~itR~efe~l 603 (1212)
+||++||.+|++|+.++++. +...+++++.+|+.+||++|+.||.+.++.+.++. ++.++.++|||++|+++
T Consensus 216 lGG~d~D~~l~~~l~~~~~~------~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~g~~~~~~itr~efe~l 287 (599)
T TIGR01991 216 LGGDDFDHALAKWILKQLGI------SADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--DGKDFKGKLTRDEFEAL 287 (599)
T ss_pred CCHHHHHHHHHHHHHHhhCC------CCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--CCcEEEEEEeHHHHHHH
Confidence 99999999999999987643 44568999999999999999999999998888874 78999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcCCccc
Q psy18164 604 NEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKV 683 (1212)
Q Consensus 604 ~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~~fkv 683 (1212)
|+|+++++..+|+++|+++++...+|+.|+||||+||+|+||+.|+++||..+..++|||+|||+|||++|+++++.++.
T Consensus 288 ~~~ll~~i~~~i~~~L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f~~~~~~~~npdeaVA~GAai~a~~l~~~~~~ 367 (599)
T TIGR01991 288 IQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQADLLAGNRIG 367 (599)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcCCChHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999888889999999999999999999999988
Q ss_pred ceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccCc---eEEEEEeccCcccCChhhhhccC
Q psy18164 684 KKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQIAMLG 760 (1212)
Q Consensus 684 ~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~~~~~~ 760 (1212)
+++.+.|++||+|||++. ++ .+.+||++|+++|++++..|++..++ +.|.||+| +..... .
T Consensus 368 ~~~~l~dv~p~slgi~~~-----~g---~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qG-e~~~~~-------~ 431 (599)
T TIGR01991 368 NDLLLLDVTPLSLGIETM-----GG---LVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQG-ERELVE-------D 431 (599)
T ss_pred CceEEEEeeeeeeEEEec-----CC---EEEEEEeCCCcCCccceEEEEEccCCCeEEEEEEEee-cccccc-------c
Confidence 999999999999999986 22 36799999999999999999876454 89999999 754322 3
Q ss_pred ceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccccCCCCCCCC
Q psy18164 761 TKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKTDENE 840 (1212)
Q Consensus 761 ~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~~~~~~~~~ 840 (1212)
+..|+++.|.|+++++++. ++|+|+|++|.||+|+|++.+. .|.
T Consensus 432 n~~lg~~~l~~i~~~~~g~-------~~i~v~f~id~~gil~V~a~~~---------~t~-------------------- 475 (599)
T TIGR01991 432 CRSLARFELRGIPPMVAGA-------ARIRVTFQVDADGLLTVSAQEQ---------STG-------------------- 475 (599)
T ss_pred CceEEEEEEcCCCCCCCCC-------CcEEEEEEECCCCeEEEEEEEC---------CCC--------------------
Confidence 5568899999999875443 6899999999999999998630 000
Q ss_pred CCcccccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHHHHHHHHHH
Q psy18164 841 KPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSK 920 (1212)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~eel~~~~~~ 920 (1212)
++.. +.+. ....|+.++++++.+.
T Consensus 476 ------------------------------------------------~~~~----~~i~----~~~~l~~~~i~~~~~~ 499 (599)
T TIGR01991 476 ------------------------------------------------VEQS----IQVK----PSYGLSDEEIERMLKD 499 (599)
T ss_pred ------------------------------------------------cEEE----Eecc----cccCCCHHHHHHHHHH
Confidence 0001 1111 2235999999999999
Q ss_pred HHhHhHHHHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH
Q psy18164 921 LDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEIN 1000 (1212)
Q Consensus 921 l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~~~Kl~eL~ 1000 (1212)
+.++...|+.++++.+++|.+|+|+|.++..+. ++...+++++|+++...++++++||+++ +.+.+++++++|+
T Consensus 500 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~l~~~----~~~~~~~~~~~l~ 573 (599)
T TIGR01991 500 SFKHAEEDMYARALAEQKVEAERILEALQAALA--ADGDLLSEDERAAIDAAMEALQKALQGD----DADAIKAAIEALE 573 (599)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HhhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHH
Confidence 999999999999999999999999999999884 3556899999999999999999999964 5689999999999
Q ss_pred HhhHHHHH
Q psy18164 1001 SLVVPIWE 1008 (1212)
Q Consensus 1001 ~~~~pi~~ 1008 (1212)
++.+++..
T Consensus 574 ~~~~~~~~ 581 (599)
T TIGR01991 574 EATDNFAA 581 (599)
T ss_pred HHHHHHHH
Confidence 99998875
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK. |
| >KOG0101|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-87 Score=785.14 Aligned_cols=605 Identities=30% Similarity=0.456 Sum_probs=546.0
Q ss_pred ccCceEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEecCcEeecHHHHHhhhhCCCchHhHhHHhcCCCCC
Q psy18164 280 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSID 359 (1212)
Q Consensus 280 ~~~~~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~ 359 (1212)
...+.++|||||||+++|+++..| .++++.|.+|+|.|||+|+|.++++++|..|..+..++|.|+++++||++|+.++
T Consensus 4 ~~~~~aiGIdlGtT~s~v~v~~~~-~v~iian~~g~rttPs~vaf~~~e~~vg~~a~~qv~~np~ntv~~~krliGr~f~ 82 (620)
T KOG0101|consen 4 TPESVAIGIDLGTTYSCVGVYQSG-KVEIIANDQGNRTTPSVVAFTDTERLIGDAAKNQVARNPDNTVFDAKRLIGRFFD 82 (620)
T ss_pred ccccceeeEeccCccceeeeEcCC-cceeeeccccCccccceeeecccccchhhhhhhhhhcCCcceeeehhhhcCcccc
Confidence 345788999999999999999977 8899999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHhhhhcCCceeeecCCCcceEEEEcCC-ceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHH
Q psy18164 360 SPVVQLFKSRFPYYDIVADEERGTIVFKTND-NELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSM 438 (1212)
Q Consensus 360 ~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al 438 (1212)
||.++..+++|||......+....+.....+ .+.++|+++.+|+|.+++..|+.+++..+.++|+|||+||+..||+++
T Consensus 83 d~~v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at 162 (620)
T KOG0101|consen 83 DPEVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAAT 162 (620)
T ss_pred chhhHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHHHH
Confidence 9999999999999877555555566655544 378999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEE
Q psy18164 439 LKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGV 518 (1212)
Q Consensus 439 ~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~ 518 (1212)
.+|+.+|||+++++|+||+||||+|++.+.. .. ..+|||+|+||||||+|++.+. .+.+.++++
T Consensus 163 ~~A~~iaGl~vlrii~EPtAaalAygl~k~~---~~-~~~VlI~DlGggtfdvs~l~i~------------gG~~~vkat 226 (620)
T KOG0101|consen 163 KDAALIAGLNVLRIINEPTAAALAYGLDKKV---LG-ERNVLIFDLGGGTFDVSVLSLE------------GGIFEVKAT 226 (620)
T ss_pred HHHHHhcCCceeeeecchHHHHHHhhccccc---cc-eeeEEEEEcCCCceeeeeEEec------------cchhhhhhh
Confidence 9999999999999999999999999976652 12 7899999999999999999986 237899999
Q ss_pred ecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccCcceEEEEeHH
Q psy18164 519 GYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRA 598 (1212)
Q Consensus 519 ~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~~d~~~~itR~ 598 (1212)
.+|.++||.+||+.|++|++.+|+. +++.++..|+|+++||+.+||++|+.||....+++.|++|+++.||...|||.
T Consensus 227 ~gd~~lGGedf~~~l~~h~~~ef~~--k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d~~~~itra 304 (620)
T KOG0101|consen 227 AGDTHLGGEDFDNKLVNHFAAEFKR--KAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRA 304 (620)
T ss_pred cccccccchhhhHHHHHHHHHHHHH--hhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhccccccceeehh
Confidence 9999999999999999999999999 66679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhC-CcccCCCCchhHHHhhHHHHHHhh
Q psy18164 599 EFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG-VELSKNLNTDEAAALGAVYKAADL 677 (1212)
Q Consensus 599 efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg-~~i~~~~n~deaVA~GAa~~aa~l 677 (1212)
+||++|.+++.++..+++.+|++++++..+|+.|+||||+||+|.+|..|+++|+ +++..++||||+||+|||+|||.+
T Consensus 305 rfe~l~~dlf~~~~~~v~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~ 384 (620)
T KOG0101|consen 305 RFEELNADLFRSTLEPVEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAIL 384 (620)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999998 889999999999999999999999
Q ss_pred cCC--cccceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccCc---eEEEEEeccCcccCC
Q psy18164 678 STG--FKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLN 752 (1212)
Q Consensus 678 s~~--fkv~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~ 752 (1212)
++. -.+.++.+.|+.|.++||+.. ++ .+.+||++++.+|.+++.+|+++.++ +.|.||+| ++....
T Consensus 385 ~g~~~~~~~~l~lid~~pl~~gve~a-----~~---~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEg-er~~~k 455 (620)
T KOG0101|consen 385 SGDKSLNIQDLLLIDVAPLSLGVETA-----GG---VFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEG-ERAMTK 455 (620)
T ss_pred cCCccccccceeeeeccccccccccc-----CC---cceeeeecccccceeeeeeeeeecCCCCceeEEEEec-cccccc
Confidence 973 245889999999999999876 43 37899999999999999999998665 89999999 754322
Q ss_pred hhhhhccCceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCcccccccccccccc
Q psy18164 753 PEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFS 832 (1212)
Q Consensus 753 ~~~~~~~~~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~ 832 (1212)
++ ..++.|.+.|+++++++. +.|+++|.+|.+|+|.|++++ .+|.+
T Consensus 456 --dn-----~~lg~feL~gippaprgv-------p~IevtfdiD~ngiL~Vta~d---------~stgK----------- 501 (620)
T KOG0101|consen 456 --DN-----NLLGKFELTGIPPAPRGV-------PQIEVTFDIDANGILNVTAVD---------KSTGK----------- 501 (620)
T ss_pred --cc-----cccceeeecCCCccccCC-------cceeEEEecCCCcEEEEeecc---------ccCCc-----------
Confidence 33 345788999999998887 799999999999999999984 11110
Q ss_pred CCCCCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHH
Q psy18164 833 RSKTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEK 912 (1212)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~e 912 (1212)
. .+ | + ..++...||.+
T Consensus 502 ------------------------------------------------------~-~~------i--~-i~n~~grls~~ 517 (620)
T KOG0101|consen 502 ------------------------------------------------------E-NK------I--T-ITNDKGRLSKE 517 (620)
T ss_pred ------------------------------------------------------c-ce------E--E-Eecccceeehh
Confidence 0 00 1 1 23456779999
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q psy18164 913 QVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVL 992 (1212)
Q Consensus 913 el~~~~~~l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~ 992 (1212)
+|+++....+....+|...+.+-+++|.||+|+|.++..++++. ..+.++++.++..+|.++..||+- ...+.+++|
T Consensus 518 ~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~~~f~~~~~~~~~~--~~i~~~~~~~~~~~~~~~i~wl~~-~~~~~~~e~ 594 (620)
T KOG0101|consen 518 EIERMVQEAEKYKAEDEKQKDKVAAKNSLESYAFNMKATVEDEK--GKINEEDKQKILDKCNEVINWLDK-NQLAEKEEF 594 (620)
T ss_pred hhhhhhhhhhhccccCHHHHHHHHHHhhHHHHHHhhhhhhhhhc--cccChhhhhhHHHHHHHHHHHhhh-cccccccHH
Confidence 99999999999999999999999999999999999999997544 899999999999999999999985 456679999
Q ss_pred HHHHHHHHHhhHHHHHHHHhh
Q psy18164 993 ENKLNEINSLVVPIWERHREH 1013 (1212)
Q Consensus 993 ~~Kl~eL~~~~~pi~~R~~e~ 1013 (1212)
++|.++|+..|+||..+++..
T Consensus 595 e~k~~el~~~~~p~~~~~~~~ 615 (620)
T KOG0101|consen 595 EHKQKELELVCNPIISKLYQG 615 (620)
T ss_pred HHHHHHHHhhccHHHHhhhcc
Confidence 999999999999999987654
|
|
| >PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-86 Score=830.74 Aligned_cols=594 Identities=34% Similarity=0.532 Sum_probs=516.0
Q ss_pred EEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEecCcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCHHHH
Q psy18164 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQ 364 (1212)
Q Consensus 285 vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~~v~ 364 (1212)
||||||||+||+||++.+| .++++.|..|+|++||+|+|.+++++||..|.....++|+++++++|||||+.++++.++
T Consensus 1 viGID~Gt~~~~va~~~~~-~~~ii~~~~~~~~~ps~v~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~ 79 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNG-KPEIILNEEGKRKTPSVVSFSDNERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQ 79 (602)
T ss_dssp EEEEEE-SSEEEEEEEETT-EEEEE--TTS-SSEESEEEEESSCEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHH
T ss_pred CEEEEeccCCEEEEEEEec-cccccccccccccccceeeEeeecccCCcchhhhcccccccccccccccccccccccccc
Confidence 7999999999999999998 789999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCceeeecCCCcceEEEEcCC-ceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHHHH
Q psy18164 365 LFKSRFPYYDIVADEERGTIVFKTND-NELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGE 443 (1212)
Q Consensus 365 ~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~Aa~ 443 (1212)
.+.+.+||......++...+.+...+ ...++|+++++++|++|++.++.+++..+.++|||||++|++.||+++++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~ 159 (602)
T PF00012_consen 80 KEKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAE 159 (602)
T ss_dssp HHHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHH
T ss_pred hhhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhccccccc
Confidence 99999999766554444444444433 36899999999999999999999999999999999999999999999999999
Q ss_pred HcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCC
Q psy18164 444 LAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 523 (1212)
Q Consensus 444 ~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~ 523 (1212)
+|||++++||+||+|||++|++.+.. . ++++|||||||||+|+|++++. .+.++++++.++..
T Consensus 160 ~agl~~~~li~Ep~Aaa~~y~~~~~~----~-~~~vlv~D~Gggt~dvs~~~~~------------~~~~~v~~~~~~~~ 222 (602)
T PF00012_consen 160 LAGLNVLRLINEPTAAALAYGLERSD----K-GKTVLVVDFGGGTFDVSVVEFS------------NGQFEVLATAGDNN 222 (602)
T ss_dssp HTT-EEEEEEEHHHHHHHHTTTTSSS----S-EEEEEEEEEESSEEEEEEEEEE------------TTEEEEEEEEEETT
T ss_pred ccccccceeecccccccccccccccc----c-ccceeccccccceEeeeehhcc------------cccccccccccccc
Confidence 99999999999999999999887665 2 7999999999999999999987 34899999999999
Q ss_pred CChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccC--CceeEEEEeeccc-CcceEEEEeHHHH
Q psy18164 524 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSA--NNEHFAQIEGLID-EIDFKLLVTRAEF 600 (1212)
Q Consensus 524 lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~--n~~~~i~ie~l~~-~~d~~~~itR~ef 600 (1212)
+||++||.+|++|+.++|+. +.+.++..+++++.+|+.+||++|+.||. +.++.+.++++++ |.|+.+.|||++|
T Consensus 223 lGG~~~D~~l~~~~~~~~~~--~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~f 300 (602)
T PF00012_consen 223 LGGRDFDEALAEYLLEKFKK--KYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSITITREEF 300 (602)
T ss_dssp CSHHHHHHHHHHHHHHHHHH--HHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHH
T ss_pred cccceecceeeccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccee
Confidence 99999999999999999998 44558888999999999999999999999 7778888999888 8999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcCC
Q psy18164 601 EALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTG 680 (1212)
Q Consensus 601 e~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~~ 680 (1212)
+++|+|+++++..+|+++|++++++..+|+.|+||||+||+|+||+.|++.||..+..++|||+|||+|||++|+.+++.
T Consensus 301 e~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~~~~~ 380 (602)
T PF00012_consen 301 EELCEPLLERIIEPIEKALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFGKKISKSVNPDEAVARGAALYAAILSGS 380 (602)
T ss_dssp HHHTHHHHHHTHHHHHHHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTTHHHHHHHHHHHHHHTS
T ss_pred cccccccccccccccccccccccccccccceeEEecCcccchhhhhhhhhccccccccccccccccccccccchhhhccc
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred cccceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccC---ceEEEEEeccCcccCChhhhh
Q psy18164 681 FKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVG---DFNFNVSYASEIEHLNPEQIA 757 (1212)
Q Consensus 681 fkv~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~---~~~i~i~~g~~~~~~~~~~~~ 757 (1212)
|+++++.+.|++||+|||.+. ++ .+.+++++|+++|..+...|.+..+ +|.|.|||| +....+
T Consensus 381 ~~~~~~~~~d~~~~~~~i~~~----~~----~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g-~~~~~~----- 446 (602)
T PF00012_consen 381 FRVKDIKIIDVTPFSIGIEVS----NG----KFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEG-ESSSFE----- 446 (602)
T ss_dssp CSSTSSCESEBESSEEEEEET----TT----EEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEES-SSSBGG-----
T ss_pred ccccccccccccccccccccc----cc----ccccccccccccccccccccchhccccccccceeeec-cccccc-----
Confidence 999999999999999999886 23 2678999999999998888876533 499999999 654322
Q ss_pred ccCceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccccCCCCC
Q psy18164 758 MLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKTD 837 (1212)
Q Consensus 758 ~~~~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~~~~~~ 837 (1212)
.+..|+++.|.++++.+++ .+.|+++|++|.+|+|+|..+++..+.
T Consensus 447 --~~~~ig~~~i~~i~~~~~g-------~~~i~v~f~ld~~Gil~V~~~~~~~~~------------------------- 492 (602)
T PF00012_consen 447 --DNKKIGSYTISGIPPAPKG-------KPKIKVTFELDENGILSVEAAEVETGK------------------------- 492 (602)
T ss_dssp --GSEEEEEEEEES-SSSSTT-------SSEEEEEEEEETTSEEEEEEEETTTTE-------------------------
T ss_pred --ccccccccccccccccccc-------ccceeeEEeeeeeeehhhhhccccccc-------------------------
Confidence 2467889999999876443 368999999999999999998521000
Q ss_pred CCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHHHHHHH
Q psy18164 838 ENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKS 917 (1212)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~eel~~~ 917 (1212)
... +. ......++.++++.+
T Consensus 493 ----------------------------------------------------~~~----~~----v~~~~~~~~~~~~~~ 512 (602)
T PF00012_consen 493 ----------------------------------------------------EEE----VT----VKKKETLSKEEIEEL 512 (602)
T ss_dssp ----------------------------------------------------EEE----EE----EESSSSSCHHHHHHH
T ss_pred ----------------------------------------------------ccc----cc----ccccccccccccccc
Confidence 000 00 011123889999999
Q ss_pred HHHHHhHhHHHHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHH
Q psy18164 918 LSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLN 997 (1212)
Q Consensus 918 ~~~l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~~~Kl~ 997 (1212)
++++.++...|+.++++.+++|.||+|+|++|++|++. ..+++++++ .+.++++.+||+++.++++.++|++|++
T Consensus 513 ~~~~~~~~~~d~~~~~~~e~kn~lE~~i~~~r~~l~~~--~~~~~~~~~---~~~l~~~~~wl~~~~~~~~~~e~~~kl~ 587 (602)
T PF00012_consen 513 KKKLEEMDEEDEERRERAEAKNELESYIYELRDKLEED--KDFVSEEEK---KKKLKETSDWLEDNGEDADKEEYKEKLE 587 (602)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--GGGSTHHHH---HHHHHHHHHHHHHHTTTSHHHHHHHHHH
T ss_pred ccccchhhhhhhhhhhccccHHHHHHHHHHHHHHHHhh--hccCCHHHH---HHHHHHHHHHHHhhccCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999744 667777766 8899999999999988999999999999
Q ss_pred HHHHhhHHHHHHHH
Q psy18164 998 EINSLVVPIWERHR 1011 (1212)
Q Consensus 998 eL~~~~~pi~~R~~ 1011 (1212)
+|+++.+||..|++
T Consensus 588 ~L~~~~~~i~~r~~ 601 (602)
T PF00012_consen 588 ELKKVIEPIKKRYM 601 (602)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999985
|
Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B .... |
| >PRK05183 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-85 Score=806.13 Aligned_cols=577 Identities=23% Similarity=0.342 Sum_probs=504.2
Q ss_pred ceEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEecCcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCHH
Q psy18164 283 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 362 (1212)
Q Consensus 283 ~~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~~ 362 (1212)
..+||||||||||+||++.+| .++++.|..|+|.+||+|+|.+++++||..|..++.++|.++++++|||||+.+++
T Consensus 19 ~~~iGIDlGTt~s~va~~~~g-~~~ii~n~~g~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d-- 95 (616)
T PRK05183 19 RLAVGIDLGTTNSLVATVRSG-QAEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNTISSVKRFMGRSLAD-- 95 (616)
T ss_pred CeEEEEEeccccEEEEEEECC-EEEEEEcCCCCeecCeEEEEcCCCEEEcHHHHHhhHhCchhhHHHHHHHhCCCchh--
Confidence 358999999999999999999 56899999999999999999888899999999999999999999999999999876
Q ss_pred HHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHHH
Q psy18164 363 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 442 (1212)
Q Consensus 363 v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~Aa 442 (1212)
++.....+||...... .+.+.+...++ .++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||
T Consensus 96 ~~~~~~~~~~~~~~~~--~g~~~~~~~~~-~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 172 (616)
T PRK05183 96 IQQRYPHLPYQFVASE--NGMPLIRTAQG-LKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAA 172 (616)
T ss_pred hhhhhhcCCeEEEecC--CCceEEEecCC-eEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHH
Confidence 4445566787544332 35566666553 79999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCC
Q psy18164 443 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 522 (1212)
Q Consensus 443 ~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~ 522 (1212)
++|||++++||+||+|||++|+..+.. ++++||||+||||||+||+++. .+.++|++++||.
T Consensus 173 ~~AGl~v~~li~EPtAAAlay~~~~~~------~~~vlV~DlGGGT~DvSv~~~~------------~~~~evlat~gd~ 234 (616)
T PRK05183 173 RLAGLNVLRLLNEPTAAAIAYGLDSGQ------EGVIAVYDLGGGTFDISILRLS------------KGVFEVLATGGDS 234 (616)
T ss_pred HHcCCCeEEEecchHHHHHHhhcccCC------CCEEEEEECCCCeEEEEEEEee------------CCEEEEEEecCCC
Confidence 999999999999999999999875432 6889999999999999999986 3479999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccCcceEEEEeHHHHHH
Q psy18164 523 TLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEA 602 (1212)
Q Consensus 523 ~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~~d~~~~itR~efe~ 602 (1212)
++||++||.+|++|+.++|+. +...+++++.+|+.+||++|+.||.+.++.+.+.. +...|||++|++
T Consensus 235 ~lGG~d~D~~l~~~~~~~~~~------~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~------~~~~itr~efe~ 302 (616)
T PRK05183 235 ALGGDDFDHLLADWILEQAGL------SPRLDPEDQRLLLDAARAAKEALSDADSVEVSVAL------WQGEITREQFNA 302 (616)
T ss_pred CcCHHHHHHHHHHHHHHHcCC------CcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEec------CCCeEcHHHHHH
Confidence 999999999999999998864 33468999999999999999999999998888853 223599999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcCCcc
Q psy18164 603 LNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFK 682 (1212)
Q Consensus 603 l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~~fk 682 (1212)
+|+|+++++..+|+++|+++++...+|+.|+||||+||+|+||+.|+++||..+..++|||+|||+|||++|+++++.++
T Consensus 303 l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAAi~a~~l~~~~~ 382 (616)
T PRK05183 303 LIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAIQADILAGNKP 382 (616)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999987788999999999999999999999888
Q ss_pred cceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccC---ceEEEEEeccCcccCChhhhhcc
Q psy18164 683 VKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVG---DFNFNVSYASEIEHLNPEQIAML 759 (1212)
Q Consensus 683 v~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~---~~~i~i~~g~~~~~~~~~~~~~~ 759 (1212)
++++.+.|++||+|||++. ++ .+.+||++|+++|++++..|++..+ .+.|.||+| +.....
T Consensus 383 ~~~~~l~dv~p~slgi~~~-----~g---~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qG-e~~~~~------- 446 (616)
T PRK05183 383 DSDMLLLDVIPLSLGLETM-----GG---LVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQG-ERELVA------- 446 (616)
T ss_pred cCceEEEeeccccccceec-----CC---eEEEEEeCCCcccccccEEEEeccCCCeEEEEEEecc-cccccc-------
Confidence 8999999999999999976 22 3678999999999999999987644 389999999 765322
Q ss_pred CceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccccCCCCCCC
Q psy18164 760 GTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKTDEN 839 (1212)
Q Consensus 760 ~~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~~~~~~~~ 839 (1212)
.+..|+++.|.|+++++++. ..|+|+|++|.||+|+|++.+. .+.
T Consensus 447 ~n~~lg~~~i~~i~~~~~g~-------~~i~v~f~~d~~Gil~V~a~~~---------~~~------------------- 491 (616)
T PRK05183 447 DCRSLARFELRGIPPMAAGA-------ARIRVTFQVDADGLLSVTAMEK---------STG------------------- 491 (616)
T ss_pred cccEEEEEEeCCCCCCCCCC-------ccEEEEEEECCCCeEEEEEEEc---------CCC-------------------
Confidence 34568899999999875443 6899999999999999997631 000
Q ss_pred CCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHHHHHHHHH
Q psy18164 840 EKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLS 919 (1212)
Q Consensus 840 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~eel~~~~~ 919 (1212)
+... +.+. ....|+.++++++.+
T Consensus 492 -------------------------------------------------~~~~----~~i~----~~~~ls~~~i~~~~~ 514 (616)
T PRK05183 492 -------------------------------------------------VEAS----IQVK----PSYGLTDDEIARMLK 514 (616)
T ss_pred -------------------------------------------------cEEE----eccc----ccccCCHHHHHHHHH
Confidence 0000 1111 123599999999999
Q ss_pred HHHhHhHHHHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHH
Q psy18164 920 KLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEI 999 (1212)
Q Consensus 920 ~l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~~~Kl~eL 999 (1212)
.+.++...|+..+++.+++|++|+|+|.++.++.+ ....+++++|+++...++++++||..+ +.+.|++++++|
T Consensus 515 ~~~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~l~~~----d~~~~~~~~~~l 588 (616)
T PRK05183 515 DSMSHAEEDMQARALAEQKVEAERVLEALQAALAA--DGDLLSAAERAAIDAAMAALREVAQGD----DADAIEAAIKAL 588 (616)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--hhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHH
Confidence 99999999999999999999999999999999953 346789999999999999999999743 678999999999
Q ss_pred HHhhHHHHHH
Q psy18164 1000 NSLVVPIWER 1009 (1212)
Q Consensus 1000 ~~~~~pi~~R 1009 (1212)
+++++++..+
T Consensus 589 ~~~~~~~~~~ 598 (616)
T PRK05183 589 DKATQEFAAR 598 (616)
T ss_pred HHHHHHHHHH
Confidence 9999999873
|
|
| >PRK01433 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-79 Score=750.28 Aligned_cols=546 Identities=21% Similarity=0.344 Sum_probs=462.2
Q ss_pred eEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEecCcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCC---
Q psy18164 284 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDS--- 360 (1212)
Q Consensus 284 ~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~--- 360 (1212)
.+||||||||||+||++.+| .++|+.|..|+|.+||+|+|.++++++|..| +++++|||||+.+++
T Consensus 20 ~viGIDlGTT~S~va~~~~~-~~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A----------ti~~~KrliG~~~~~~~~ 88 (595)
T PRK01433 20 IAVGIDFGTTNSLIAIATNR-KVKVIKSIDDKELIPTTIDFTSNNFTIGNNK----------GLRSIKRLFGKTLKEILN 88 (595)
T ss_pred eEEEEEcCcccEEEEEEeCC-eeEEEECCCCCeecCeEEEEcCCCEEECchh----------hHHHHHHHhCCCchhhcc
Confidence 58999999999999999887 7899999999999999999988889999987 799999999999876
Q ss_pred -HHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHH
Q psy18164 361 -PVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSML 439 (1212)
Q Consensus 361 -~~v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~ 439 (1212)
+.+....+++ +.. ..+.+.+..++ ..++|+++++++|++|++.|+.+++.++.++|||||+||++.||++++
T Consensus 89 ~~~~~~~~k~~----~~~--~~~~~~~~~~~-~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~~ 161 (595)
T PRK01433 89 TPALFSLVKDY----LDV--NSSELKLNFAN-KQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVM 161 (595)
T ss_pred chhhHhhhhhe----eec--CCCeeEEEECC-EEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHH
Confidence 2221111111 111 12334555554 689999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEe
Q psy18164 440 KAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVG 519 (1212)
Q Consensus 440 ~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~ 519 (1212)
+||++|||++++||+||+|||++|+..... ..++||||+||||||+||+++. .+.++|++++
T Consensus 162 ~Aa~~AGl~v~~li~EPtAAAlay~~~~~~------~~~vlV~DlGGGT~DvSi~~~~------------~~~~~V~at~ 223 (595)
T PRK01433 162 LAAKIAGFEVLRLIAEPTAAAYAYGLNKNQ------KGCYLVYDLGGGTFDVSILNIQ------------EGIFQVIATN 223 (595)
T ss_pred HHHHHcCCCEEEEecCcHHHHHHHhcccCC------CCEEEEEECCCCcEEEEEEEEe------------CCeEEEEEEc
Confidence 999999999999999999999999986432 5789999999999999999986 3479999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccCcceEEEEeHHH
Q psy18164 520 YDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAE 599 (1212)
Q Consensus 520 ~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~~d~~~~itR~e 599 (1212)
||..+||++||.+|++|++++|.. ..+.+ .++.||++|+.||.+..... ..++|||++
T Consensus 224 gd~~lGG~d~D~~l~~~~~~~~~~--------~~~~~----~~~~~ekaK~~LS~~~~~~~----------~~~~itr~e 281 (595)
T PRK01433 224 GDNMLGGNDIDVVITQYLCNKFDL--------PNSID----TLQLAKKAKETLTYKDSFNN----------DNISINKQT 281 (595)
T ss_pred CCcccChHHHHHHHHHHHHHhcCC--------CCCHH----HHHHHHHHHHhcCCCccccc----------ceEEEcHHH
Confidence 999999999999999999998853 12222 23459999999998875321 178999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcC
Q psy18164 600 FEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLST 679 (1212)
Q Consensus 600 fe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~ 679 (1212)
||++|+|+++++..+|+++|++++ ..+|+.|+||||+||+|+||+.|+++||.++..++|||+|||+|||++|+.+++
T Consensus 282 fe~l~~~l~~~~~~~i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~a~~l~~ 359 (595)
T PRK01433 282 LEQLILPLVERTINIAQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENLIA 359 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcC--cccCcEEEEECCcccChhHHHHHHHHhCCCceecCCchHHHHHHHHHHHHHhhC
Confidence 999999999999999999999998 678999999999999999999999999988888999999999999999999987
Q ss_pred CcccceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccCc---eEEEEEeccCcccCChhhh
Q psy18164 680 GFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQI 756 (1212)
Q Consensus 680 ~fkv~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~~ 756 (1212)
.+ +++.+.|++||+|||++. ++ .+.+||++|+++|.+++..|++..++ +.|.||+| +.....
T Consensus 360 ~~--~~~~l~Dv~p~slgi~~~-----~g---~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qG-e~~~~~---- 424 (595)
T PRK01433 360 PH--TNSLLIDVVPLSLGMELY-----GG---IVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQG-EREMAA---- 424 (595)
T ss_pred Cc--cceEEEEecccceEEEec-----CC---EEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEec-cccccC----
Confidence 63 578999999999999986 33 36799999999999999999876443 89999999 765332
Q ss_pred hccCceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccccCCCC
Q psy18164 757 AMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKT 836 (1212)
Q Consensus 757 ~~~~~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~~~~~ 836 (1212)
.+..|++|.|.|+++++++. ++|+|+|++|.||+|+|++.+. .|.
T Consensus 425 ---~n~~lg~~~l~~i~~~~~g~-------~~i~vtf~id~~Gil~V~a~~~---------~t~---------------- 469 (595)
T PRK01433 425 ---DCRSLARFELKGLPPMKAGS-------IRAEVTFAIDADGILSVSAYEK---------ISN---------------- 469 (595)
T ss_pred ---CCcEEEEEEEcCCCCCCCCC-------ccEEEEEEECCCCcEEEEEEEc---------CCC----------------
Confidence 35568899999999875543 6899999999999999998841 000
Q ss_pred CCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHHHHHH
Q psy18164 837 DENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEK 916 (1212)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~eel~~ 916 (1212)
+... +.+. ....|+.+++++
T Consensus 470 ----------------------------------------------------~~~~----~~i~----~~~~ls~~ei~~ 489 (595)
T PRK01433 470 ----------------------------------------------------TSHA----IEVK----PNHGIDKTEIDI 489 (595)
T ss_pred ----------------------------------------------------cEEE----EEec----CCCCCCHHHHHH
Confidence 0001 1111 123599999999
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHH
Q psy18164 917 SLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKL 996 (1212)
Q Consensus 917 ~~~~l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~~~Kl 996 (1212)
+.+.+.++...|..++++.+++|.+|+++|.++..+. ++...+++++|+++...+++.++||..+ +...+++++
T Consensus 490 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~i~~~~~~~~~~l~~~----~~~~~~~~~ 563 (595)
T PRK01433 490 MLENAYKNAKIDYTTRLLQEAVIEAEALIFNIERAIA--ELTTLLSESEISIINSLLDNIKEAVHAR----DIILINNSI 563 (595)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HhhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHH
Confidence 9999999999999999999999999999999999994 3666789999999999999999999743 667888888
Q ss_pred HHHHHhhHH
Q psy18164 997 NEINSLVVP 1005 (1212)
Q Consensus 997 ~eL~~~~~p 1005 (1212)
++|+....+
T Consensus 564 ~~~~~~~~~ 572 (595)
T PRK01433 564 KEFKSKIKK 572 (595)
T ss_pred HHHHHHHHH
Confidence 888888887
|
|
| >KOG0102|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-81 Score=702.07 Aligned_cols=594 Identities=26% Similarity=0.396 Sum_probs=528.8
Q ss_pred ccCceEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEE-ecCcEeecHHHHHhhhhCCCchHhHhHHhcCCCC
Q psy18164 280 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAF-HKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSI 358 (1212)
Q Consensus 280 ~~~~~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f-~~~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~ 358 (1212)
...-+|+|||+||+||+++++.+++| .++.|.+|.|.+||+|+| .++++++|..|+.++..||.|++++-||||||.|
T Consensus 24 ~~~~~vigidlgttnS~va~meg~~~-kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf 102 (640)
T KOG0102|consen 24 KVKGKVIGIDLGTTNSCVAVMEGKKP-KIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRF 102 (640)
T ss_pred CCCCceeeEeeeccceeEEEEeCCCc-eEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhc
Confidence 34567999999999999999998844 599999999999999999 6779999999999999999999999999999999
Q ss_pred CCHHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHH
Q psy18164 359 DSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSM 438 (1212)
Q Consensus 359 ~~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al 438 (1212)
+||.++.+.+..||..+. ..++-..+.. .+..|+|.++.+++|.+++..|+.+++.++..+|+|||+||++.||+++
T Consensus 103 ~d~evq~~~k~vpyKiVk--~~ngdaw~e~-~G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaT 179 (640)
T KOG0102|consen 103 DDPEVQKDIKQVPYKIVK--ASNGDAWVEA-RGKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQAT 179 (640)
T ss_pred cCHHHHHHHHhCCcceEE--ccCCcEEEEe-CCeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHh
Confidence 999999999999998776 3466677777 6689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEE
Q psy18164 439 LKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGV 518 (1212)
Q Consensus 439 ~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~ 518 (1212)
++|.++||+++++.||||||||++|++.+.. ...++|||+||||||++|+.+. ++.++|.++
T Consensus 180 kdag~iagl~vlrvineptaaalaygld~k~------~g~iaV~dLgggtfdisilei~------------~gvfevksT 241 (640)
T KOG0102|consen 180 KDAGQIAGLNVLRVINEPTAAALAYGLDKKE------DGVIAVFDLGGGTFDISILEIE------------DGVFEVKST 241 (640)
T ss_pred HhhhhhccceeeccCCccchhHHhhcccccC------CCceEEEEcCCceeeeeeehhc------------cceeEEEec
Confidence 9999999999999999999999999997654 5789999999999999999986 458999999
Q ss_pred ecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccC----cceEEE
Q psy18164 519 GYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDE----IDFKLL 594 (1212)
Q Consensus 519 ~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~----~d~~~~ 594 (1212)
.+|.++||.+||..+++|+...|+. ..+.|+..+.+++.||+.++||+|..||....+.+.++.+..| ..++++
T Consensus 242 ngdtflggedfd~~~~~~~v~~fk~--~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~ 319 (640)
T KOG0102|consen 242 NGDTHLGGEDFDNALVRFIVSEFKK--EEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIE 319 (640)
T ss_pred cCccccChhHHHHHHHHHHHHhhhc--ccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEe
Confidence 9999999999999999999999988 7778999999999999999999999999999999998877655 789999
Q ss_pred EeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHH
Q psy18164 595 VTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKA 674 (1212)
Q Consensus 595 itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~a 674 (1212)
+||.+||+++.++++|.+.|++++|++|++..+||+.|+||||++|+|+|++.+.+.||+..+..+||||+||.|||+++
T Consensus 320 ~tr~efe~~v~~lI~Rti~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava~GAaiqg 399 (640)
T KOG0102|consen 320 LTRGEFEELVPSLIARTIEPCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVAGGAAIQG 399 (640)
T ss_pred ecHHHHHHhhHHHHHhhhhHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHhCCCCCCCcCCcchhccchhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCcccceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccCc---eEEEEEeccCcccC
Q psy18164 675 ADLSTGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHL 751 (1212)
Q Consensus 675 a~ls~~fkv~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~ 751 (1212)
..+++. |+++.+.|+.|.++||+.. |+. ++.|+++++.+|.+++..|.+..+. +.+.|++| +++..
T Consensus 400 gvl~ge--VkdvlLLdVtpLsLgietl-----ggv---ft~Li~rnttIptkksqvfstaadgqt~V~ikv~qg-ere~~ 468 (640)
T KOG0102|consen 400 GVLSGE--VKDVLLLDVTPLSLGIETL-----GGV---FTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQG-EREMV 468 (640)
T ss_pred chhhcc--ccceeeeecchHHHHHHhh-----hhh---heecccCCcccCchhhhheeecccCCceEEEEeeec-hhhhh
Confidence 999986 9999999999999999877 443 7889999999999999999987443 89999999 87644
Q ss_pred ChhhhhccCceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccc
Q psy18164 752 NPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLF 831 (1212)
Q Consensus 752 ~~~~~~~~~~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f 831 (1212)
. + +..|+.|.+.|+++++++. ++|.|+|.+|.+||++|++.+ +.|.
T Consensus 469 ~--d-----nk~lG~f~l~gipp~pRgv-------pqieVtfDIdanGI~~vsA~d---------k~t~----------- 514 (640)
T KOG0102|consen 469 N--D-----NKLLGSFILQGIPPAPRGV-------PQIEVTFDIDANGIGTVSAKD---------KGTG----------- 514 (640)
T ss_pred c--c-----CcccceeeecccCCCCCCC-------CceeEEEeecCCceeeeehhh---------cccC-----------
Confidence 3 3 4445677999999999988 799999999999999999873 1100
Q ss_pred cCCCCCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCH
Q psy18164 832 SRSKTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNE 911 (1212)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~ 911 (1212)
|.+- +. ......||+
T Consensus 515 -------------------------------------------------------K~qs------i~----i~~sggLs~ 529 (640)
T KOG0102|consen 515 -------------------------------------------------------KSQS------IT----IASSGGLSK 529 (640)
T ss_pred -------------------------------------------------------Cccc------eE----EeecCCCCH
Confidence 0000 11 123456999
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q psy18164 912 KQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADV 991 (1212)
Q Consensus 912 eel~~~~~~l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~ 991 (1212)
++++.+++..+.+...|+.++++-+..|..|+++|+....+ .+|.+..+.++.++|+..+....+.+-.- ...+.+.
T Consensus 530 ~ei~~mV~eaer~~~~d~~~~~~ie~~nka~s~~~~te~~~--~~~~~~~~~~~~~~i~~~i~~l~~~~~~~-~~~~~~~ 606 (640)
T KOG0102|consen 530 DEIELMVGEAERLASTDKEKREAIETKNKADSIIYDTEKSL--KEFEEKIPAEECEKLEEKISDLRELVANK-DSGDMEE 606 (640)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhhhcchhheecCchhhh--hhhhhhCcHHHHHHHHHHHHHHHHHHhhh-ccCChhh
Confidence 99999999999999999999999999999999999999888 56888888888889999999888888421 1222366
Q ss_pred HHHHHHHHHHhhHHHHHHH
Q psy18164 992 LENKLNEINSLVVPIWERH 1010 (1212)
Q Consensus 992 ~~~Kl~eL~~~~~pi~~R~ 1010 (1212)
...+...|+...-|++.-+
T Consensus 607 ~k~~~~~l~q~~lkl~es~ 625 (640)
T KOG0102|consen 607 IKKAMSALQQASLKLFESA 625 (640)
T ss_pred HHHHHHHHHHhhhHHHHHH
Confidence 7777777777666666533
|
|
| >COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-78 Score=733.47 Aligned_cols=570 Identities=30% Similarity=0.413 Sum_probs=508.0
Q ss_pred ceEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEecC-cEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCH
Q psy18164 283 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG-ERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 361 (1212)
Q Consensus 283 ~~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~~-~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~ 361 (1212)
+.+||||||||||+||++++|..+.++.|..|.|.+||+|+|..+ ++++|..|+.++..+|.+|++.+||++|+.-.
T Consensus 5 ~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~-- 82 (579)
T COG0443 5 KKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSN-- 82 (579)
T ss_pred ceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCC--
Confidence 468999999999999999987456799999999999999999755 69999999999999999999999999998610
Q ss_pred HHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHH
Q psy18164 362 VVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 441 (1212)
Q Consensus 362 ~v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~A 441 (1212)
.....+.+++ +.++|+++++++|+++++.|+.+++..+.++|||||+||++.||+++++|
T Consensus 83 -------------------~~~~~~~~~~-~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A 142 (579)
T COG0443 83 -------------------GLKISVEVDG-KKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDA 142 (579)
T ss_pred -------------------CCcceeeeCC-eeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHH
Confidence 0112333443 68999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecC
Q psy18164 442 GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYD 521 (1212)
Q Consensus 442 a~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d 521 (1212)
|++|||++++|+|||+|||++|+..... +.+|||||+||||||+||+++. .+.++|+++++|
T Consensus 143 ~~iaGl~vlrlinEPtAAAlayg~~~~~------~~~vlV~DlGGGTfDvSll~~~------------~g~~ev~at~gd 204 (579)
T COG0443 143 ARIAGLNVLRLINEPTAAALAYGLDKGK------EKTVLVYDLGGGTFDVSLLEIG------------DGVFEVLATGGD 204 (579)
T ss_pred HHHcCCCeEEEecchHHHHHHhHhccCC------CcEEEEEEcCCCCEEEEEEEEc------------CCEEEEeecCCC
Confidence 9999999999999999999999997762 7899999999999999999986 238999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccCcceEEEEeHHHHH
Q psy18164 522 RTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFE 601 (1212)
Q Consensus 522 ~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~~d~~~~itR~efe 601 (1212)
..|||++||.+|.+|+..+|.. +.+.|+..++++++||+.+||++|+.||++.++.+.++.+..+.++..+|||++||
T Consensus 205 ~~LGGddfD~~l~~~~~~~f~~--~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~~~~~~~ltR~~~E 282 (579)
T COG0443 205 NHLGGDDFDNALIDYLVMEFKG--KGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFE 282 (579)
T ss_pred cccCchhHHHHHHHHHHHHhhc--cCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhccccchhhhhhhHHHHH
Confidence 9999999999999999999998 55579999999999999999999999999999999999888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcCCc
Q psy18164 602 ALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGF 681 (1212)
Q Consensus 602 ~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~~f 681 (1212)
+++.+++.++..+++++|.++++...+|+.|+||||+||||.|++.|+++||+++..++||||+||+|||++|+.+++..
T Consensus 283 ~l~~dll~r~~~~~~~al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeava~GAa~qa~~l~~~~ 362 (579)
T COG0443 283 ELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQAAVLSGEV 362 (579)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChhhCceEEEccceeccHHHHHHHHHHhCccccccCCccHHHHHHHHHHHHhhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred ccceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccCc---eEEEEEeccCcccCChhhhhc
Q psy18164 682 KVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQIAM 758 (1212)
Q Consensus 682 kv~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~~~~ 758 (1212)
+ ++.+.|++|+++|+++. ++ .+..++++++.+|.++...|.+..++ +.+.+++| +.....
T Consensus 363 ~--d~ll~Dv~plslgie~~-----~~---~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qg-e~~~~~------ 425 (579)
T COG0443 363 P--DVLLLDVIPLSLGIETL-----GG---VRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQG-EREMAA------ 425 (579)
T ss_pred c--CceEEeeeeeccccccC-----cc---hhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEec-chhhcc------
Confidence 5 89999999999999887 32 36789999999999999999887554 88999999 765332
Q ss_pred cCceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccccCCCCCC
Q psy18164 759 LGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKTDE 838 (1212)
Q Consensus 759 ~~~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~~~~~~~ 838 (1212)
.+..++.|.+.|+++++++. +.|+++|.+|.||++.|++.+. .+.
T Consensus 426 -~~~~lg~f~l~~i~~~~~g~-------~~i~v~f~iD~~gi~~v~a~~~---------~~~------------------ 470 (579)
T COG0443 426 -DNKSLGRFELDGIPPAPRGV-------PQIEVTFDIDANGILNVTAKDL---------GTG------------------ 470 (579)
T ss_pred -cCceeEEEECCCCCCCCCCC-------CceEEEeccCCCcceEeeeecc---------cCC------------------
Confidence 35668899999999998777 6799999999999999988631 000
Q ss_pred CCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHHHHHHHH
Q psy18164 839 NEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSL 918 (1212)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~eel~~~~ 918 (1212)
+... +.+ .....|++++++.+.
T Consensus 471 ------------------------------------------------k~~~------i~i----~~~~~ls~~~i~~~~ 492 (579)
T COG0443 471 ------------------------------------------------KEQS------ITI----KASSGLSDEEIERMV 492 (579)
T ss_pred ------------------------------------------------ceEE------EEE----ecCCCCCHHHHHHHH
Confidence 0000 111 122349999999999
Q ss_pred HHHHhHhHHHHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHH
Q psy18164 919 SKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNE 998 (1212)
Q Consensus 919 ~~l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~~~Kl~e 998 (1212)
+....+...|+..++..+.+|..++++|.++..|.+.. .+.+++++.+...+.++++||+. + .++++.+.++
T Consensus 493 ~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~l~~--~---~~~~~~~~~~ 564 (579)
T COG0443 493 EDAEANAALDKKFRELVEARNEAESLIYSLEKALKEIV---KVSEEEKEKIEEAITDLEEALEG--E---KEEIKAKIEE 564 (579)
T ss_pred HHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhc---cCCHHHHHHHHHHHHHHHHHHhc--c---HHHHHHHHHH
Confidence 99999999999999999999999999999999996432 89999999999999999999996 1 8899999999
Q ss_pred HHHhhHHHHHHHHh
Q psy18164 999 INSLVVPIWERHRE 1012 (1212)
Q Consensus 999 L~~~~~pi~~R~~e 1012 (1212)
|+....++..++.+
T Consensus 565 l~~~~~~~~~~~~~ 578 (579)
T COG0443 565 LQEVTQKLAEKKYQ 578 (579)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887653
|
|
| >PRK11678 putative chaperone; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-52 Score=490.99 Aligned_cols=346 Identities=19% Similarity=0.204 Sum_probs=290.9
Q ss_pred EEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEe---------------------------------------
Q psy18164 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH--------------------------------------- 325 (1212)
Q Consensus 285 vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~--------------------------------------- 325 (1212)
++|||||||||+||++.+| .++++.+..|.+.+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~~~~-~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDG-KPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDID 80 (450)
T ss_pred eEEEecCccceeeEEeeCC-ceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhccccccc
Confidence 5899999999999999988 678999999999999999993
Q ss_pred --cCcEeecHHHHHhhhhCCCch--HhHhHHhcCCCCCCHHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHH
Q psy18164 326 --KGERTFGEDAQIIGTRFPSNS--YGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVA 401 (1212)
Q Consensus 326 --~~~r~~G~~A~~~~~~~p~~t--~~~~k~llG~~~~~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a 401 (1212)
++..++|..|......+|.++ +..+|++||...-. .+....++++++
T Consensus 81 ~~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~-----------------------------~~~~~~~e~l~a 131 (450)
T PRK11678 81 VTAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLK-----------------------------PQQVALFEDLVC 131 (450)
T ss_pred ccccccchhHHHHHhhccCCCCceEEecchhhhccCCCC-----------------------------ccceeCHHHHHH
Confidence 456789999999999999999 77999999974110 012234899999
Q ss_pred HHHHHHHHHHHHHcCCccceEEEecCCCCC-----HHHHHH---HHHHHHHcCCCeeeeechhHHHHHhhcccccccCCC
Q psy18164 402 MLLHKAREYASVSAGQVINEAVIIVPGYFN-----QIERQS---MLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNE 473 (1212)
Q Consensus 402 ~~L~~lk~~a~~~~~~~i~~~VItVP~~f~-----~~qR~a---l~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~ 473 (1212)
++|++|++.++.+++.++.++|||||++|+ +.||++ |++||++|||++++|++||+|||++|+....
T Consensus 132 ~iL~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~----- 206 (450)
T PRK11678 132 AMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLT----- 206 (450)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccC-----
Confidence 999999999999999999999999999998 788776 7999999999999999999999999986432
Q ss_pred CCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHH-HHHHHHHhhc--ccCCCC
Q psy18164 474 TNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLR-DFLGKKFNEM--KKTTKD 550 (1212)
Q Consensus 474 ~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~-~~l~~~~~~~--~~~~~d 550 (1212)
. ++++|||||||||+|+||+++.... .+ ......+|++++| ..+||+|||.+|+ +++...|... ++.+.+
T Consensus 207 ~-~~~vlV~D~GGGT~D~Svv~~~~~~---~~--~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~ 279 (450)
T PRK11678 207 E-EKRVLVVDIGGGTTDCSMLLMGPSW---RG--RADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIA 279 (450)
T ss_pred C-CCeEEEEEeCCCeEEEEEEEecCcc---cc--cCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCc
Confidence 2 6889999999999999999986210 00 1133578999998 5799999999998 6888888521 111110
Q ss_pred C-----------------------------------CCCHHHH------------HHHHHHHHHhhhhccCCceeEEEEe
Q psy18164 551 V-----------------------------------FENPRAV------------AKLFKEAGRLKNVLSANNEHFAQIE 583 (1212)
Q Consensus 551 ~-----------------------------------~~~~ra~------------~kL~~~aek~K~~LS~n~~~~i~ie 583 (1212)
+ ..+|+.+ .+|+.+||++|+.||.+.++.+.++
T Consensus 280 ~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~ 359 (450)
T PRK11678 280 LPSLPFWNAVAINDVPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLD 359 (450)
T ss_pred CcchhhhhhhhhhccchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEec
Confidence 0 1134444 3788999999999999999999998
Q ss_pred ecccCcceEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCch
Q psy18164 584 GLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTD 663 (1212)
Q Consensus 584 ~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~d 663 (1212)
.+. .++..+|||++|+++|+++++++..+|+++|+++++. ++.|+||||+||||.|++.|.+.||.......|+.
T Consensus 360 ~~~--~~~~~~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~ 434 (450)
T PRK11678 360 FIS--DGLATEISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDF 434 (450)
T ss_pred ccC--CCcceeeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCc
Confidence 764 4578999999999999999999999999999999976 47899999999999999999999996666678999
Q ss_pred hHHHhhHHHHHHhh
Q psy18164 664 EAAALGAVYKAADL 677 (1212)
Q Consensus 664 eaVA~GAa~~aa~l 677 (1212)
++||.|+|++|..+
T Consensus 435 ~sVa~Gla~~a~~~ 448 (450)
T PRK11678 435 GSVTAGLARWAQVV 448 (450)
T ss_pred chHHHHHHHHHHhh
Confidence 99999999999753
|
|
| >KOG0100|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-46 Score=402.54 Aligned_cols=218 Identities=30% Similarity=0.470 Sum_probs=206.6
Q ss_pred ceEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEecCceeEccchhhhhccCCCChHHHHHHHhCCCCCCHH
Q psy18164 36 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 115 (1212)
Q Consensus 36 ~~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~~ 115 (1212)
-+|||||+||||+||+++.+| .++||.|.+|+|.+||+|+|.+.+++||.+|++++..||.|++++.|||||+.++++.
T Consensus 36 gtvigIdLGTTYsCVgV~kNg-rvEIiANdQGNRItPSyVaFt~derLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~~ 114 (663)
T KOG0100|consen 36 GTVIGIDLGTTYSCVGVYKNG-RVEIIANDQGNRITPSYVAFTDDERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDKS 114 (663)
T ss_pred ceEEEEecCCceeeEEEEeCC-eEEEEecCCCCccccceeeeccchhhhhhHhhcccccCcccceechHHHhCcccCChh
Confidence 479999999999999999999 4899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCceeeeccCCCceEEEEcCC--cceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHH
Q psy18164 116 VQLFKSRFPYYDIVADEERGTIVFKTND--NELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLK 193 (1212)
Q Consensus 116 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~ 193 (1212)
++..+++|||+ ++..+..+.+.+.+.+ .+.++|+++.+|+|.++++.|+.++|..+.++|+||||||++.||+++++
T Consensus 115 vq~Dik~~Pfk-vv~k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATKD 193 (663)
T KOG0100|consen 115 VQKDIKFLPFK-VVNKDGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKD 193 (663)
T ss_pred hhhhhhcCceE-EEcCCCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhhcc
Confidence 99999999985 8888899999999864 47899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEeeccccccch
Q psy18164 194 AGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGMK 260 (1212)
Q Consensus 194 Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~~~~~~~~~~ 260 (1212)
|..+||++++++|+||+|||++|++.+... ++++||||+||||||||++.+.+|...++.++
T Consensus 194 AGtIAgLnV~RIiNePTaAAIAYGLDKk~g-----EknilVfDLGGGTFDVSlLtIdnGVFeVlaTn 255 (663)
T KOG0100|consen 194 AGTIAGLNVVRIINEPTAAAIAYGLDKKDG-----EKNILVFDLGGGTFDVSLLTIDNGVFEVLATN 255 (663)
T ss_pred cceeccceEEEeecCccHHHHHhcccccCC-----cceEEEEEcCCceEEEEEEEEcCceEEEEecC
Confidence 999999999999999999999999977653 57999999999999999999999999887654
|
|
| >PRK13928 rod shape-determining protein Mbl; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=347.27 Aligned_cols=308 Identities=19% Similarity=0.266 Sum_probs=239.0
Q ss_pred EEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEecC--c-EeecHHHHHhhhhCCCchHhHhHHhcCCCCCCHH
Q psy18164 286 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG--E-RTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 362 (1212)
Q Consensus 286 vGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~~--~-r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~~ 362 (1212)
+||||||++++|+....| .++. +||+|+|... . ..+|.+|..++.+.|.+....
T Consensus 6 ~gIDlGt~~~~i~~~~~~---~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~~------------- 62 (336)
T PRK13928 6 IGIDLGTANVLVYVKGKG---IVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVAI------------- 62 (336)
T ss_pred eEEEcccccEEEEECCCC---EEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEEE-------------
Confidence 799999999999887443 2332 5999999743 2 369999988776666553210
Q ss_pred HHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHHH
Q psy18164 363 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 442 (1212)
Q Consensus 363 v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~Aa 442 (1212)
.| +.++ .+...++...+|+++.+.+..........+|||||++|++.||+++.+|+
T Consensus 63 -------~p----------------i~~G-~i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~ 118 (336)
T PRK13928 63 -------RP----------------LRDG-VIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAA 118 (336)
T ss_pred -------cc----------------CCCC-eEecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 11 1111 23344566777777775543322223347999999999999999999999
Q ss_pred HHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCC
Q psy18164 443 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 522 (1212)
Q Consensus 443 ~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~ 522 (1212)
+.||++++.+++||+|||++|+..... +..++|||+||||||+++++.. + + ...++.
T Consensus 119 ~~ag~~~~~li~ep~Aaa~~~g~~~~~------~~~~lVvDiGggttdvsvv~~g-------~-------~---~~~~~~ 175 (336)
T PRK13928 119 EQAGAKKVYLIEEPLAAAIGAGLDISQ------PSGNMVVDIGGGTTDIAVLSLG-------G-------I---VTSSSI 175 (336)
T ss_pred HHcCCCceEecccHHHHHHHcCCcccC------CCeEEEEEeCCCeEEEEEEEeC-------C-------E---EEeCCc
Confidence 999999999999999999999874321 5779999999999999999863 1 1 134578
Q ss_pred CCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCc----eeEEEEe--ecccCcceEEEEe
Q psy18164 523 TLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANN----EHFAQIE--GLIDEIDFKLLVT 596 (1212)
Q Consensus 523 ~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~----~~~i~ie--~l~~~~d~~~~it 596 (1212)
.+||++||..|++++..+|+. .+. ...||++|+.++... ...+.+. .+..+.++.++|+
T Consensus 176 ~lGG~did~~i~~~l~~~~~~------~~~---------~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~i~ 240 (336)
T PRK13928 176 KVAGDKFDEAIIRYIRKKYKL------LIG---------ERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKTITVT 240 (336)
T ss_pred CCHHHHHHHHHHHHHHHHhch------hcC---------HHHHHHHHHHhcccccccCCcEEEEecccccCCCceEEEEC
Confidence 999999999999999988753 111 256899999876431 1233332 3445667789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCCcc-EEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHH
Q psy18164 597 RAEFEALNEDLFDRVGYPVEQALKSSA--VPMDVIS-QVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYK 673 (1212)
Q Consensus 597 R~efe~l~~~l~~~i~~~i~~~L~~a~--~~~~~i~-~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~ 673 (1212)
|++|++++.++++++..+|+++|+.++ +..+.++ .|+|+||+|++|.|++.|++.||.++....||++|||+|||++
T Consensus 241 ~~~~~eii~~~~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~~ 320 (336)
T PRK13928 241 SEEIREALKEPVSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGKM 320 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHHH
Confidence 999999999999999999999999986 4556777 7999999999999999999999988888899999999999999
Q ss_pred HHhhc
Q psy18164 674 AADLS 678 (1212)
Q Consensus 674 aa~ls 678 (1212)
+..+.
T Consensus 321 ~~~~~ 325 (336)
T PRK13928 321 LENID 325 (336)
T ss_pred HhchH
Confidence 98753
|
|
| >PRK13929 rod-share determining protein MreBH; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=340.16 Aligned_cols=305 Identities=21% Similarity=0.295 Sum_probs=244.1
Q ss_pred EEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEecCc---EeecHHHHHhhhhCCCchHhHhHHhcCCCCCCH
Q psy18164 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGE---RTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 361 (1212)
Q Consensus 285 vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~~~---r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~ 361 (1212)
.+||||||+|++| +.+|++ ++.| .||+|+|+++. .++|.+|+.+..++|.++... +
T Consensus 6 ~~giDlGt~~~~i--~~~~~~--~~~~------~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~--~--------- 64 (335)
T PRK13929 6 EIGIDLGTANILV--YSKNKG--IILN------EPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV--R--------- 64 (335)
T ss_pred eEEEEcccccEEE--EECCCc--EEec------CCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE--e---------
Confidence 5899999999985 555655 3555 39999997442 479999999988888775431 1
Q ss_pred HHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccc--eEEEecCCCCCHHHHHHHH
Q psy18164 362 VVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVIN--EAVIIVPGYFNQIERQSML 439 (1212)
Q Consensus 362 ~v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~--~~VItVP~~f~~~qR~al~ 439 (1212)
|. ..+. +..-++++++|++++..++..++..+. .+|||||++|++.||+++.
T Consensus 65 ---------pi----------------~~G~-I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~ 118 (335)
T PRK13929 65 ---------PM----------------KDGV-IADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAIS 118 (335)
T ss_pred ---------cC----------------CCCc-cCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHH
Confidence 11 1111 222378899999999998887776554 7999999999999999999
Q ss_pred HHHHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEe
Q psy18164 440 KAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVG 519 (1212)
Q Consensus 440 ~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~ 519 (1212)
+|++.||++++.|++||+|||++|+.... . +..++|||+||||||++++.+. | + + ..
T Consensus 119 ~a~~~ag~~~~~li~ep~Aaa~~~g~~~~-----~-~~~~lvvDiG~gtt~v~vi~~~-------~-------~--~-~~ 175 (335)
T PRK13929 119 DAVKNCGAKNVHLIEEPVAAAIGADLPVD-----E-PVANVVVDIGGGTTEVAIISFG-------G-------V--V-SC 175 (335)
T ss_pred HHHHHcCCCeeEeecCHHHHHHhcCCCcC-----C-CceEEEEEeCCCeEEEEEEEeC-------C-------E--E-Ee
Confidence 99999999999999999999999976432 2 6789999999999999999864 2 1 1 33
Q ss_pred cCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCc----eeEEEEe--ecccCcceEE
Q psy18164 520 YDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANN----EHFAQIE--GLIDEIDFKL 593 (1212)
Q Consensus 520 ~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~----~~~i~ie--~l~~~~d~~~ 593 (1212)
++..+||++||..|++++.+.|+- .. . ...||++|+.|+... ...+.+. ++..+....+
T Consensus 176 ~~~~~GG~~id~~l~~~l~~~~~~------~~--~-------~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~~i 240 (335)
T PRK13929 176 HSIRIGGDQLDEDIVSFVRKKYNL------LI--G-------ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTI 240 (335)
T ss_pred cCcCCHHHHHHHHHHHHHHHHhCc------Cc--C-------HHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCeEE
Confidence 456899999999999999876643 11 1 257999999998632 2233333 2344556789
Q ss_pred EEeHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCcc-EEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhH
Q psy18164 594 LVTRAEFEALNEDLFDRVGYPVEQALKSSAVP--MDVIS-QVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGA 670 (1212)
Q Consensus 594 ~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~--~~~i~-~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GA 670 (1212)
.|+|++|+++|.+++.++...|.++|+.++.. .+.++ .|+|+||+|++|.+++.|++.||.++....||+++||+||
T Consensus 241 ~i~~~~~~~~i~~~l~~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga 320 (335)
T PRK13929 241 TLESKEIQGAMRESLLHILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGT 320 (335)
T ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHH
Confidence 99999999999999999999999999998643 46677 6999999999999999999999988888899999999999
Q ss_pred HHHH
Q psy18164 671 VYKA 674 (1212)
Q Consensus 671 a~~a 674 (1212)
+..-
T Consensus 321 ~~~~ 324 (335)
T PRK13929 321 GRSL 324 (335)
T ss_pred HHHH
Confidence 9774
|
|
| >PTZ00186 heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=371.50 Aligned_cols=214 Identities=28% Similarity=0.418 Sum_probs=192.9
Q ss_pred ceEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEecCceeEccchhhhhccCCCChHHHHHHHhCCCCCCHH
Q psy18164 36 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 115 (1212)
Q Consensus 36 ~~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~~ 115 (1212)
..+|||||||||||||++.+| .+++++|..|.+.+||+|+|.++.+++|..|+..+..+|.++++++||+||++++++.
T Consensus 27 ~~viGIDLGTTnS~vA~~~~~-~~~ii~n~~g~r~tPS~V~f~~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~ 105 (657)
T PTZ00186 27 GDVIGVDLGTTYSCVATMDGD-KARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEH 105 (657)
T ss_pred ceEEEEEeCcCeEEEEEEeCC-ceEEeecCCCCcccceEEEECCCCEEEcHHHHHhhhhCchhHHHHHHHHhccccccHH
Confidence 469999999999999999887 5789999999999999999998899999999999999999999999999999999999
Q ss_pred HHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHHH
Q psy18164 116 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 195 (1212)
Q Consensus 116 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~Aa 195 (1212)
++.....+||..+.. .++...+...+++.++|++|.+++|++|++.|+.++|.++.++|||||+||++.||+++++||
T Consensus 106 v~~~~~~~p~~vv~~--~~~~~~i~~~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa 183 (657)
T PTZ00186 106 IQKDIKNVPYKIVRA--GNGDAWVQDGNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAG 183 (657)
T ss_pred HHHhhccCcEEEEEc--CCCceEEEeCCCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHH
Confidence 999999999864333 344455555567889999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEeecccccc
Q psy18164 196 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERG 258 (1212)
Q Consensus 196 ~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~~~~~~~~ 258 (1212)
+.|||+++++|+||+|||++|+.... .+++||||||||||||+||+++..+...+++
T Consensus 184 ~~AGl~v~rlInEPtAAAlayg~~~~------~~~~vlV~DlGGGT~DvSil~~~~g~~~V~a 240 (657)
T PTZ00186 184 TIAGLNVIRVVNEPTAAALAYGMDKT------KDSLIAVYDLGGGTFDISVLEIAGGVFEVKA 240 (657)
T ss_pred HHcCCCeEEEEcChHHHHHHHhccCC------CCCEEEEEECCCCeEEEEEEEEeCCEEEEEE
Confidence 99999999999999999999997543 2468999999999999999999887766554
|
|
| >PTZ00400 DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=368.72 Aligned_cols=212 Identities=30% Similarity=0.441 Sum_probs=189.3
Q ss_pred ceEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEe-cCceeEccchhhhhccCCCChHHHHHHHhCCCCCCH
Q psy18164 36 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 114 (1212)
Q Consensus 36 ~~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~-~~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~ 114 (1212)
.++||||||||||+||++.+| .+++++|..|.+.+||+|+|. ++.+++|..|+.++..+|.++++++|||||++++++
T Consensus 41 ~~viGIDlGTt~s~va~~~~~-~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 119 (663)
T PTZ00400 41 GDIVGIDLGTTNSCVAIMEGS-QPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDED 119 (663)
T ss_pred CcEEEEEECcccEEEEEEeCC-eeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcH
Confidence 369999999999999999876 589999999999999999996 568999999999999999999999999999999999
Q ss_pred HHHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHH
Q psy18164 115 VVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 194 (1212)
Q Consensus 115 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~A 194 (1212)
.++.....+||. ++.. .++.+.+.+ +++.++|+++++++|++|++.|+.++|.++.++|||||++|++.||+++++|
T Consensus 120 ~~~~~~~~~p~~-~~~~-~~~~~~~~~-~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 196 (663)
T PTZ00400 120 ATKKEQKILPYK-IVRA-SNGDAWIEA-QGKKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDA 196 (663)
T ss_pred HHHhhhccCCeE-EEec-CCCceEEEE-CCEEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHH
Confidence 999989999985 3332 334455554 3678999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEeeccccc
Q psy18164 195 GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKER 257 (1212)
Q Consensus 195 a~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~~~~~~~ 257 (1212)
|+.|||+++++|+||+|||++|+.... .++++|||||||||||+||+++..+...++
T Consensus 197 a~~AGl~v~~li~EptAAAlay~~~~~------~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~ 253 (663)
T PTZ00400 197 GKIAGLDVLRIINEPTAAALAFGMDKN------DGKTIAVYDLGGGTFDISILEILGGVFEVK 253 (663)
T ss_pred HHHcCCceEEEeCchHHHHHHhccccC------CCcEEEEEeCCCCeEEEEEEEecCCeeEEE
Confidence 999999999999999999999987542 246899999999999999999987665543
|
|
| >PTZ00009 heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=366.73 Aligned_cols=219 Identities=30% Similarity=0.487 Sum_probs=194.6
Q ss_pred CceEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEecCceeEccchhhhhccCCCChHHHHHHHhCCCCCCH
Q psy18164 35 GIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 114 (1212)
Q Consensus 35 ~~~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~ 114 (1212)
.+++||||||||||+||++.+| .+++++|..|++.+||+|+|.++.+++|..|+.++.++|.++++++||+||+.++++
T Consensus 3 ~~~~iGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~tPS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 81 (653)
T PTZ00009 3 KGPAIGIDLGTTYSCVGVWKNE-NVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDS 81 (653)
T ss_pred cccEEEEEeCcccEEEEEEeCC-ceEEEECCCCCccCCcEEEECCCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCch
Confidence 4678999999999999999887 589999999999999999999889999999999999999999999999999999999
Q ss_pred HHHHHHhcCCceeeeccCCCceEEEEcCC-cceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHH
Q psy18164 115 VVQLFKSRFPYYDIVADEERGTIVFKTND-NELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLK 193 (1212)
Q Consensus 115 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~ 193 (1212)
.++...+.+||..+...++...+.+...+ +..++|++|++++|++|++.|+.++|.++.++|||||++|++.||+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~ 161 (653)
T PTZ00009 82 VVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKD 161 (653)
T ss_pred hHhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHH
Confidence 99999999998644444444555554433 57899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEeecccccc
Q psy18164 194 AGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERG 258 (1212)
Q Consensus 194 Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~~~~~~~~ 258 (1212)
||+.|||++++||+||+|||++|++.+... .++++|||||||||||+||+++..+...+++
T Consensus 162 Aa~~AGl~v~~li~EptAAAl~y~~~~~~~----~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a 222 (653)
T PTZ00009 162 AGTIAGLNVLRIINEPTAAAIAYGLDKKGD----GEKNVLIFDLGGGTFDVSLLTIEDGIFEVKA 222 (653)
T ss_pred HHHHcCCceeEEecchHHHHHHHhhhccCC----CCCEEEEEECCCCeEEEEEEEEeCCeEEEEE
Confidence 999999999999999999999999754321 2468999999999999999999877655543
|
|
| >PRK13410 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=358.24 Aligned_cols=211 Identities=31% Similarity=0.465 Sum_probs=184.5
Q ss_pred eEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEe-cCceeEccchhhhhccCCCChHHHHHHHhCCCCCCHH
Q psy18164 37 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 115 (1212)
Q Consensus 37 ~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~-~~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~~ 115 (1212)
.+||||||||||+||++.+|+ +.+++|..|.+.+||+|+|. ++.+++|..|+.++..+|.++++++||+||+++.+
T Consensus 3 ~viGIDlGTt~s~va~~~~g~-~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~-- 79 (668)
T PRK13410 3 RIVGIDLGTTNSVVAVMEGGK-PVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE-- 79 (668)
T ss_pred cEEEEEeCCCcEEEEEEECCe-EEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchh--
Confidence 479999999999999999885 56778999999999999996 57899999999999999999999999999999866
Q ss_pred HHHHHhcCCceeeeccCCCceEEEEcC-CcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHH
Q psy18164 116 VQLFKSRFPYYDIVADEERGTIVFKTN-DNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 194 (1212)
Q Consensus 116 ~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~A 194 (1212)
++.....+||. +..+ .++.+.+.+. .++.++|++|++++|++|++.|+.++|.++.++|||||++|++.||+++++|
T Consensus 80 ~~~~~~~~~~~-v~~~-~~g~~~i~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 157 (668)
T PRK13410 80 LDPESKRVPYT-IRRN-EQGNVRIKCPRLEREFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDA 157 (668)
T ss_pred hHHhhccCCeE-EEEC-CCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHH
Confidence 45556778875 3332 3455555543 4678999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEeecccccc
Q psy18164 195 GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERG 258 (1212)
Q Consensus 195 a~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~~~~~~~~ 258 (1212)
|+.|||+++++|+||+|||++|+.... .++++||||||||||||||+++..+...+++
T Consensus 158 a~~AGl~v~~li~EPtAAAlayg~~~~------~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~a 215 (668)
T PRK13410 158 GRIAGLEVERILNEPTAAALAYGLDRS------SSQTVLVFDLGGGTFDVSLLEVGNGVFEVKA 215 (668)
T ss_pred HHHcCCCeEEEecchHHHHHHhccccC------CCCEEEEEECCCCeEEEEEEEEcCCeEEEEE
Confidence 999999999999999999999987543 2468999999999999999999877655543
|
|
| >PRK13411 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=357.54 Aligned_cols=211 Identities=30% Similarity=0.459 Sum_probs=184.2
Q ss_pred eEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEec-CceeEccchhhhhccCCCChHHHHHHHhCCCCCCHH
Q psy18164 37 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 115 (1212)
Q Consensus 37 ~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~-~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~~ 115 (1212)
.+||||||||||+||++.+|+ +.+++|..|.+.+||+|+|.+ +.+++|..|+.++..+|.++++++|||||++++++.
T Consensus 3 ~viGIDlGTt~s~va~~~~g~-~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 81 (653)
T PRK13411 3 KVIGIDLGTTNSCVAVLEGGK-PIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTE 81 (653)
T ss_pred cEEEEEeCcccEEEEEEECCE-EEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchh
Confidence 489999999999999999885 568899999999999999964 689999999999999999999999999999998864
Q ss_pred HHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHHH
Q psy18164 116 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 195 (1212)
Q Consensus 116 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~Aa 195 (1212)
....++||..+.. .++.+.+.+ ++..++|+++++++|++|++.|+.++|.++.++|||||++|++.||+++++||
T Consensus 82 --~~~~~~~~~~v~~--~~~~~~~~i-~~~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 156 (653)
T PRK13411 82 --EERSRVPYTCVKG--RDDTVNVQI-RGRNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAG 156 (653)
T ss_pred --HHhhcCCceEEec--CCCceEEEE-CCEEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHHH
Confidence 3467888864433 334444444 36789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEeecccccc
Q psy18164 196 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERG 258 (1212)
Q Consensus 196 ~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~~~~~~~~ 258 (1212)
+.|||+++++|+||+|||++|++.+.. .++++|||||||||||+||+++..+...+++
T Consensus 157 ~~AGl~v~~li~EPtAAAl~y~~~~~~-----~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~a 214 (653)
T PRK13411 157 TIAGLEVLRIINEPTAAALAYGLDKQD-----QEQLILVFDLGGGTFDVSILQLGDGVFEVKA 214 (653)
T ss_pred HHcCCCeEEEecchHHHHHHhcccccC-----CCCEEEEEEcCCCeEEEEEEEEeCCEEEEEE
Confidence 999999999999999999999875432 2468999999999999999999877655543
|
|
| >PRK13927 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-33 Score=320.82 Aligned_cols=306 Identities=18% Similarity=0.286 Sum_probs=228.7
Q ss_pred EEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEecC-c--EeecHHHHHhhhhCCCchHhHhHHhcCCCCCCH
Q psy18164 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG-E--RTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 361 (1212)
Q Consensus 285 vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~~-~--r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~ 361 (1212)
.+||||||++++++.. |.+. ++ .+||+|+|... + .++|++|..+..+.|.++...
T Consensus 7 ~igIDlGt~~~~i~~~--~~~~-~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~~------------ 64 (334)
T PRK13927 7 DLGIDLGTANTLVYVK--GKGI-VL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVAI------------ 64 (334)
T ss_pred eeEEEcCcceEEEEEC--CCcE-EE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEEE------------
Confidence 5899999999998544 4333 32 28999999643 2 489999998876666553210
Q ss_pred HHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHH
Q psy18164 362 VVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 441 (1212)
Q Consensus 362 ~v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~A 441 (1212)
+| +..+..... +.+..+|+++......... .-..+|||||++|++.||+++++|
T Consensus 65 --------~p----------------i~~G~i~d~-~~~~~ll~~~~~~~~~~~~-~~~~~vi~vP~~~~~~~r~~~~~a 118 (334)
T PRK13927 65 --------RP----------------MKDGVIADF-DVTEKMLKYFIKKVHKNFR-PSPRVVICVPSGITEVERRAVRES 118 (334)
T ss_pred --------ec----------------CCCCeecCH-HHHHHHHHHHHHHHhhccC-CCCcEEEEeCCCCCHHHHHHHHHH
Confidence 11 111211112 2233444444433322221 123799999999999999999999
Q ss_pred HHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecC
Q psy18164 442 GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYD 521 (1212)
Q Consensus 442 a~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d 521 (1212)
++.||++.+.+++||+|||++|+..... +..++|||+||||||++++++. | + ...++
T Consensus 119 ~~~ag~~~~~li~ep~aaa~~~g~~~~~------~~~~lvvDiGggttdvs~v~~~-------~-------~---~~~~~ 175 (334)
T PRK13927 119 ALGAGAREVYLIEEPMAAAIGAGLPVTE------PTGSMVVDIGGGTTEVAVISLG-------G-------I---VYSKS 175 (334)
T ss_pred HHHcCCCeeccCCChHHHHHHcCCcccC------CCeEEEEEeCCCeEEEEEEecC-------C-------e---EeeCC
Confidence 9999999999999999999999874322 5678999999999999999864 3 1 12345
Q ss_pred CCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCce----eEEEE--eecccCcceEEEE
Q psy18164 522 RTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNE----HFAQI--EGLIDEIDFKLLV 595 (1212)
Q Consensus 522 ~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~----~~i~i--e~l~~~~d~~~~i 595 (1212)
..+||++||..|.+++.++|.. .. + ...||++|+.++.... ..+.+ +.+..+.++.+.|
T Consensus 176 ~~lGG~~id~~l~~~l~~~~~~------~~--~-------~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 240 (334)
T PRK13927 176 VRVGGDKFDEAIINYVRRNYNL------LI--G-------ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPKTITI 240 (334)
T ss_pred cCChHHHHHHHHHHHHHHHhCc------Cc--C-------HHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCeEEEE
Confidence 6799999999999999877743 11 1 2468999998875322 22333 3344566778999
Q ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCcc-EEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHH
Q psy18164 596 TRAEFEALNEDLFDRVGYPVEQALKSSAVP--MDVIS-QVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVY 672 (1212)
Q Consensus 596 tR~efe~l~~~l~~~i~~~i~~~L~~a~~~--~~~i~-~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~ 672 (1212)
+|++|++++.++++++..+|.++|+.++.. .+.++ .|+|+||+|++|.|++.|++.|+.++....||+++||+||++
T Consensus 241 ~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~ 320 (334)
T PRK13927 241 SSNEIREALQEPLSAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGK 320 (334)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHH
Confidence 999999999999999999999999998643 23344 599999999999999999999998888899999999999999
Q ss_pred HHHh
Q psy18164 673 KAAD 676 (1212)
Q Consensus 673 ~aa~ 676 (1212)
++..
T Consensus 321 ~~~~ 324 (334)
T PRK13927 321 ALEN 324 (334)
T ss_pred HHhh
Confidence 9875
|
|
| >PRK00290 dnaK molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-34 Score=354.78 Aligned_cols=210 Identities=34% Similarity=0.497 Sum_probs=186.1
Q ss_pred eEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEe-cCceeEccchhhhhccCCCChHHHHHHHhCCCCCCHH
Q psy18164 37 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 115 (1212)
Q Consensus 37 ~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~-~~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~~ 115 (1212)
++||||||||||+||++.+|+ +++++|..|++.+||+|+|. ++.+++|..|+.++..+|.++++++|||||+. ++.
T Consensus 3 ~viGIDlGTt~s~va~~~~g~-~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~~ 79 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVMEGGE-PKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--DEE 79 (627)
T ss_pred cEEEEEeCcccEEEEEEECCE-EEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--chH
Confidence 489999999999999999875 67999999999999999996 77899999999999999999999999999998 566
Q ss_pred HHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHHH
Q psy18164 116 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 195 (1212)
Q Consensus 116 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~Aa 195 (1212)
++...+.+||. ++.. .++...+.+ ++..++|+++++++|++|++.++.++|.++.++|||||++|++.||+++++||
T Consensus 80 ~~~~~~~~p~~-~~~~-~~~~~~~~~-~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa 156 (627)
T PRK00290 80 VQKDIKLVPYK-IVKA-DNGDAWVEI-DGKKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAG 156 (627)
T ss_pred HHHHhhcCCeE-EEEc-CCCceEEEE-CCEEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHH
Confidence 78888899986 4433 344444544 46789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEeecccccc
Q psy18164 196 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERG 258 (1212)
Q Consensus 196 ~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~~~~~~~~ 258 (1212)
+.|||++++||+||+|||++|+.... .++++|||||||||||+|++++..+...+++
T Consensus 157 ~~AGl~v~~li~EptAAAl~y~~~~~------~~~~vlV~D~GggT~dvsv~~~~~~~~~vla 213 (627)
T PRK00290 157 KIAGLEVLRIINEPTAAALAYGLDKK------GDEKILVYDLGGGTFDVSILEIGDGVFEVLS 213 (627)
T ss_pred HHcCCceEEEecchHHHHHHhhhccC------CCCEEEEEECCCCeEEEEEEEEeCCeEEEEE
Confidence 99999999999999999999987542 2468999999999999999999877665554
|
|
| >TIGR00904 mreB cell shape determining protein, MreB/Mrl family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=316.70 Aligned_cols=306 Identities=19% Similarity=0.297 Sum_probs=226.2
Q ss_pred EEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEecC-----c--EeecHHHHHhhhhCCCchHhHhHHhcCCCC
Q psy18164 286 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG-----E--RTFGEDAQIIGTRFPSNSYGYFLDLLGKSI 358 (1212)
Q Consensus 286 vGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~~-----~--r~~G~~A~~~~~~~p~~t~~~~k~llG~~~ 358 (1212)
+||||||+||+|++...| + ++ ..||+|+|.++ + .++|.+|..++.+.|.+.- +++
T Consensus 5 ~giDlGt~~s~i~~~~~~--~-~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~~------ 66 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGRG--I-VL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIV--AIR------ 66 (333)
T ss_pred eEEecCcceEEEEECCCC--E-EE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEE--EEe------
Confidence 899999999999886433 3 32 37999999633 3 6799999887666565432 111
Q ss_pred CCHHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHH
Q psy18164 359 DSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSM 438 (1212)
Q Consensus 359 ~~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al 438 (1212)
| +.++..... +.+..+++++........+..-..+|||||++|++.||+++
T Consensus 67 ------------p----------------i~~G~i~d~-~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~ 117 (333)
T TIGR00904 67 ------------P----------------MKDGVIADF-EVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAV 117 (333)
T ss_pred ------------c----------------CCCCEEEcH-HHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHH
Confidence 1 111222222 22333444444333221121123799999999999999999
Q ss_pred HHHHHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEE
Q psy18164 439 LKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGV 518 (1212)
Q Consensus 439 ~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~ 518 (1212)
.+|++.||++++.+++||+|||++|+.... . +..++|||+||||||++++++. | + ..
T Consensus 118 ~~~~~~ag~~~~~li~ep~aaa~~~g~~~~-----~-~~~~lVvDiG~gttdvs~v~~~-------~-------~---~~ 174 (333)
T TIGR00904 118 KESALSAGAREVYLIEEPMAAAIGAGLPVE-----E-PTGSMVVDIGGGTTEVAVISLG-------G-------I---VV 174 (333)
T ss_pred HHHHHHcCCCeEEEecCHHHHHHhcCCccc-----C-CceEEEEEcCCCeEEEEEEEeC-------C-------E---Ee
Confidence 999999999999999999999999986432 2 5789999999999999999864 2 1 12
Q ss_pred ecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCce-----eEEEEee--cccCcce
Q psy18164 519 GYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNE-----HFAQIEG--LIDEIDF 591 (1212)
Q Consensus 519 ~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~-----~~i~ie~--l~~~~d~ 591 (1212)
..+..+||++||+.|++++.++|.. ... +..||++|+.|+.... ..+.+.. ...+...
T Consensus 175 ~~~~~lGG~did~~l~~~l~~~~~~------~~~---------~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (333)
T TIGR00904 175 SRSIRVGGDEFDEAIINYIRRTYNL------LIG---------EQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPR 239 (333)
T ss_pred cCCccchHHHHHHHHHHHHHHHhcc------cCC---------HHHHHHHHHHHhccccccccccceeecCccccCCCCe
Confidence 3456899999999999999877642 111 3578999999875322 1222221 1223445
Q ss_pred EEEEeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCc-c-EEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHh
Q psy18164 592 KLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPM-DVI-S-QVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAAL 668 (1212)
Q Consensus 592 ~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~-~~i-~-~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~ 668 (1212)
...|+|++|.+++.+.++++...|.++|+.++... .++ + .|+|+||+|++|.+++.|++.||.++....||+++||.
T Consensus 240 ~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~ 319 (333)
T TIGR00904 240 TIEITSVEVREALQEPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAK 319 (333)
T ss_pred EEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHH
Confidence 67899999999999999999999999999987542 244 3 69999999999999999999999888899999999999
Q ss_pred hHHHHHHh
Q psy18164 669 GAVYKAAD 676 (1212)
Q Consensus 669 GAa~~aa~ 676 (1212)
||++++..
T Consensus 320 Ga~~~~~~ 327 (333)
T TIGR00904 320 GTGKALED 327 (333)
T ss_pred HHHHHHhC
Confidence 99999754
|
A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK. |
| >PRK05183 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=350.05 Aligned_cols=211 Identities=28% Similarity=0.413 Sum_probs=184.2
Q ss_pred ceEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEecCceeEccchhhhhccCCCChHHHHHHHhCCCCCCHH
Q psy18164 36 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 115 (1212)
Q Consensus 36 ~~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~~ 115 (1212)
..+||||||||||+||++.+|+ +++++|..|++.+||+|+|.++.++||..|+.++..+|.++++++||+||+.+++
T Consensus 19 ~~~iGIDlGTt~s~va~~~~g~-~~ii~n~~g~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d-- 95 (616)
T PRK05183 19 RLAVGIDLGTTNSLVATVRSGQ-AEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNTISSVKRFMGRSLAD-- 95 (616)
T ss_pred CeEEEEEeccccEEEEEEECCE-EEEEEcCCCCeecCeEEEEcCCCEEEcHHHHHhhHhCchhhHHHHHHHhCCCchh--
Confidence 3689999999999999999885 6899999999999999999888899999999999999999999999999999876
Q ss_pred HHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHHH
Q psy18164 116 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 195 (1212)
Q Consensus 116 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~Aa 195 (1212)
++.....+||. +... .++.+.+.+.+ ..++|+++++++|++|++.++.++|.++.++|||||++|++.||+++++||
T Consensus 96 ~~~~~~~~~~~-~~~~-~~g~~~~~~~~-~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 172 (616)
T PRK05183 96 IQQRYPHLPYQ-FVAS-ENGMPLIRTAQ-GLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAA 172 (616)
T ss_pred hhhhhhcCCeE-EEec-CCCceEEEecC-CeEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHH
Confidence 34445667774 3332 34566666543 379999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEeecccccc
Q psy18164 196 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERG 258 (1212)
Q Consensus 196 ~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~~~~~~~~ 258 (1212)
+.|||+++++|+||+|||++|++... .++++||||+||||||+||+++..+...+++
T Consensus 173 ~~AGl~v~~li~EPtAAAlay~~~~~------~~~~vlV~DlGGGT~DvSv~~~~~~~~evla 229 (616)
T PRK05183 173 RLAGLNVLRLLNEPTAAAIAYGLDSG------QEGVIAVYDLGGGTFDISILRLSKGVFEVLA 229 (616)
T ss_pred HHcCCCeEEEecchHHHHHHhhcccC------CCCEEEEEECCCCeEEEEEEEeeCCEEEEEE
Confidence 99999999999999999999987542 2468999999999999999999877655444
|
|
| >TIGR01991 HscA Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-34 Score=350.32 Aligned_cols=208 Identities=31% Similarity=0.405 Sum_probs=182.5
Q ss_pred EEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEec-CceeEccchhhhhccCCCChHHHHHHHhCCCCCCHHH
Q psy18164 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVV 116 (1212)
Q Consensus 38 vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~-~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~~~ 116 (1212)
+||||||||||+||++.+|+ +++++|..|.+.+||+|+|.+ +.+++|..|+.++..+|.++++++|||+|+++.+...
T Consensus 1 ~iGIDlGTtns~va~~~~g~-~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~~ 79 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGV-PEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIKT 79 (599)
T ss_pred CEEEEEccccEEEEEEECCE-EEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchhh
Confidence 48999999999999999874 789999999999999999974 5899999999999999999999999999999877432
Q ss_pred HHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHHHH
Q psy18164 117 QLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGE 196 (1212)
Q Consensus 117 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~Aa~ 196 (1212)
.+.+||. ++.. .++.+.+.+.+ ..++|+++++++|++|++.++.++|.++.++|||||++|++.||+++++||+
T Consensus 80 ---~~~~~~~-~~~~-~~~~~~~~~~~-~~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~ 153 (599)
T TIGR01991 80 ---FSILPYR-FVDG-PGEMVRLRTVQ-GTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAAR 153 (599)
T ss_pred ---cccCCEE-EEEc-CCCceEEEeCC-CEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHH
Confidence 5667774 4433 34566666654 3799999999999999999999999999999999999999999999999999
Q ss_pred HcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEeecccccc
Q psy18164 197 LAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERG 258 (1212)
Q Consensus 197 ~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~~~~~~~~ 258 (1212)
.|||+++++|+||+|||++|+.... .++++|||||||||||+||+++..+...+++
T Consensus 154 ~AGl~v~~li~EPtAAAlay~~~~~------~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla 209 (599)
T TIGR01991 154 LAGLNVLRLLNEPTAAAVAYGLDKA------SEGIYAVYDLGGGTFDVSILKLTKGVFEVLA 209 (599)
T ss_pred HcCCCceEEecCHHHHHHHHhhccC------CCCEEEEEEcCCCeEEEEEEEEcCCeEEEEE
Confidence 9999999999999999999987543 2468999999999999999999887665553
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK. |
| >PLN03184 chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=350.49 Aligned_cols=213 Identities=29% Similarity=0.445 Sum_probs=186.8
Q ss_pred ceEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEe-cCceeEccchhhhhccCCCChHHHHHHHhCCCCCCH
Q psy18164 36 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 114 (1212)
Q Consensus 36 ~~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~-~~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~ 114 (1212)
.++||||||||||+||++.+|+ +++++|..|++.+||+|+|. ++.+++|..|+.++..+|.++++++|||||+++++
T Consensus 39 ~~viGIDlGTt~s~va~~~~g~-~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d- 116 (673)
T PLN03184 39 EKVVGIDLGTTNSAVAAMEGGK-PTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE- 116 (673)
T ss_pred CCEEEEEeCcCcEEEEEEECCe-EEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch-
Confidence 3599999999999999999885 67999999999999999996 56899999999999999999999999999999876
Q ss_pred HHHHHHhcCCceeeeccCCCceEEEEcC-CcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHH
Q psy18164 115 VVQLFKSRFPYYDIVADEERGTIVFKTN-DNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLK 193 (1212)
Q Consensus 115 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~ 193 (1212)
++...+.+||. ++.+ .++.+.+.+. .+..++|+++++++|++|++.++.++|.++.++|||||++|++.||+++++
T Consensus 117 -~~~~~~~~~~~-v~~~-~~~~v~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~ 193 (673)
T PLN03184 117 -VDEESKQVSYR-VVRD-ENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKD 193 (673)
T ss_pred -hhhhhhcCCeE-EEec-CCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHH
Confidence 45566778875 4433 3455555543 467899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEeeccccccc
Q psy18164 194 AGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGM 259 (1212)
Q Consensus 194 Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~~~~~~~~~ 259 (1212)
||+.|||+++++|+||+|||++|+.... .++++|||||||||||+||+++..+...+++.
T Consensus 194 Aa~~AGl~v~~li~EPtAAAlayg~~~~------~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~ 253 (673)
T PLN03184 194 AGRIAGLEVLRIINEPTAASLAYGFEKK------SNETILVFDLGGGTFDVSVLEVGDGVFEVLST 253 (673)
T ss_pred HHHHCCCCeEEEeCcHHHHHHHhhcccC------CCCEEEEEECCCCeEEEEEEEecCCEEEEEEe
Confidence 9999999999999999999999987543 24589999999999999999998877666654
|
|
| >TIGR02350 prok_dnaK chaperone protein DnaK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=348.38 Aligned_cols=209 Identities=34% Similarity=0.527 Sum_probs=184.6
Q ss_pred EEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEec-CceeEccchhhhhccCCCChHHHHHHHhCCCCCCHHH
Q psy18164 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVV 116 (1212)
Q Consensus 38 vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~-~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~~~ 116 (1212)
+||||||||||+||++.+|+ +++++|..|.+.+||+|+|.+ +.+++|..|+.++..+|.++++++||+||+++. .+
T Consensus 2 viGIDlGtt~s~va~~~~g~-~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~--~~ 78 (595)
T TIGR02350 2 IIGIDLGTTNSCVAVMEGGE-PVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFD--EV 78 (595)
T ss_pred EEEEEeCcccEEEEEEECCE-EEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCch--HH
Confidence 78999999999999999885 568899999999999999974 589999999999999999999999999999884 46
Q ss_pred HHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHHHH
Q psy18164 117 QLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGE 196 (1212)
Q Consensus 117 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~Aa~ 196 (1212)
+...+.+||. +..+ ++.+.+.++ ++.++|+++++++|++|++.++.++|.++.++|||||++|++.||+++++||+
T Consensus 79 ~~~~~~~~~~-v~~~--~~~~~~~v~-~~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa~ 154 (595)
T TIGR02350 79 TEEAKRVPYK-VVGD--GGDVRVKVD-GKEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGK 154 (595)
T ss_pred HHHhhcCCee-EEcC--CCceEEEEC-CEEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 6677889986 4433 455555554 67899999999999999999999999999999999999999999999999999
Q ss_pred HcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEeecccccc
Q psy18164 197 LAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERG 258 (1212)
Q Consensus 197 ~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~~~~~~~~ 258 (1212)
.||++++++|+||+|||++|+..+.. .++++|||||||||||+||+++..+...+++
T Consensus 155 ~AGl~v~~li~EptAAAl~y~~~~~~-----~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~ 211 (595)
T TIGR02350 155 IAGLEVLRIINEPTAAALAYGLDKSK-----KDEKILVFDLGGGTFDVSILEIGDGVFEVLS 211 (595)
T ss_pred HcCCceEEEecchHHHHHHHhhcccC-----CCcEEEEEECCCCeEEEEEEEecCCeEEEEE
Confidence 99999999999999999999875421 2568999999999999999999877555553
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved. |
| >KOG0102|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-34 Score=318.56 Aligned_cols=222 Identities=30% Similarity=0.422 Sum_probs=203.3
Q ss_pred CceEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEE-ecCceeEccchhhhhccCCCChHHHHHHHhCCCCCC
Q psy18164 35 GIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAF-HKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDS 113 (1212)
Q Consensus 35 ~~~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~-~~~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~ 113 (1212)
.-+|+|||+||||||++++.++. +.++.|..|.|.+||+|+| .++.+++|..|+++...||.|+++.-||+||++|++
T Consensus 26 ~~~vigidlgttnS~va~meg~~-~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~d 104 (640)
T KOG0102|consen 26 KGKVIGIDLGTTNSCVAVMEGKK-PKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFDD 104 (640)
T ss_pred CCceeeEeeeccceeEEEEeCCC-ceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhccC
Confidence 35699999999999999999775 5688999999999999999 577999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHH
Q psy18164 114 PVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLK 193 (1212)
Q Consensus 114 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~ 193 (1212)
+.++.+++..||+.+. ..++..++.+ .|..++|.++.+++|.+++++|+.+++..+.++|+||||||++.||+++++
T Consensus 105 ~evq~~~k~vpyKiVk--~~ngdaw~e~-~G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTkd 181 (640)
T KOG0102|consen 105 PEVQKDIKQVPYKIVK--ASNGDAWVEA-RGKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATKD 181 (640)
T ss_pred HHHHHHHHhCCcceEE--ccCCcEEEEe-CCeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhHh
Confidence 9999999999997555 4556666666 799999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEeeccccccchhhhhHH
Q psy18164 194 AGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGMKISLVTL 266 (1212)
Q Consensus 194 Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~~~~~~~~~~~~~~~~ 266 (1212)
|.++||++++++++||+|||++|++.... .+.++|||+||||||++|+.+..|-..+..++-...+-
T Consensus 182 ag~iagl~vlrvineptaaalaygld~k~------~g~iaV~dLgggtfdisilei~~gvfevksTngdtflg 248 (640)
T KOG0102|consen 182 AGQIAGLNVLRVINEPTAAALAYGLDKKE------DGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLG 248 (640)
T ss_pred hhhhccceeeccCCccchhHHhhcccccC------CCceEEEEcCCceeeeeeehhccceeEEEeccCccccC
Confidence 99999999999999999999999986543 35899999999999999999999999888877665443
|
|
| >PRK13930 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-31 Score=309.72 Aligned_cols=309 Identities=19% Similarity=0.256 Sum_probs=233.3
Q ss_pred EEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEec-C--cEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCH
Q psy18164 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-G--ERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 361 (1212)
Q Consensus 285 vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~-~--~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~ 361 (1212)
-+||||||+++++++... ++ ++ .+||+|+|.+ + ..++|.+|.....+.|.+.. +
T Consensus 10 ~vgiDlGt~~t~i~~~~~--~~-~~-------~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~----------- 66 (335)
T PRK13930 10 DIGIDLGTANTLVYVKGK--GI-VL-------NEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIE--A----------- 66 (335)
T ss_pred ceEEEcCCCcEEEEECCC--CE-EE-------ecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeE--E-----------
Confidence 389999999999998633 33 22 2699999964 2 35899999877655554321 0
Q ss_pred HHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHH
Q psy18164 362 VVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 441 (1212)
Q Consensus 362 ~v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~A 441 (1212)
.+|. .++.... -+.+..+|+++.+.+..........+|||+|++|+..+|+++.+|
T Consensus 67 -------~~pi----------------~~G~i~d-~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~ 122 (335)
T PRK13930 67 -------IRPL----------------KDGVIAD-FEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREA 122 (335)
T ss_pred -------eecC----------------CCCeEcC-HHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHH
Confidence 0111 1121112 244666777777655443344467899999999999999999999
Q ss_pred HHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecC
Q psy18164 442 GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYD 521 (1212)
Q Consensus 442 a~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d 521 (1212)
++.+|++++.+++||+|||++|+..... +..++|||+||||||++++... .+ .....
T Consensus 123 ~e~~g~~~~~lv~ep~AAa~a~g~~~~~------~~~~lVvDiG~gttdvs~v~~g--------------~~---~~~~~ 179 (335)
T PRK13930 123 AEHAGAREVYLIEEPMAAAIGAGLPVTE------PVGNMVVDIGGGTTEVAVISLG--------------GI---VYSES 179 (335)
T ss_pred HHHcCCCeEEecccHHHHHHhcCCCcCC------CCceEEEEeCCCeEEEEEEEeC--------------CE---EeecC
Confidence 9999999999999999999999764322 4567999999999999999753 11 12456
Q ss_pred CCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCce----eEEEEe--ecccCcceEEEE
Q psy18164 522 RTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNE----HFAQIE--GLIDEIDFKLLV 595 (1212)
Q Consensus 522 ~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~----~~i~ie--~l~~~~d~~~~i 595 (1212)
..+||.+||+.|.+++.+++.- +.. ...||++|+.|+.... ..+.+. .+..+.+..+.|
T Consensus 180 ~~lGG~~id~~l~~~l~~~~~~------~~~---------~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 244 (335)
T PRK13930 180 IRVAGDEMDEAIVQYVRRKYNL------LIG---------ERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPKTIEI 244 (335)
T ss_pred cCchhHHHHHHHHHHHHHHhCC------CCC---------HHHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCeeEEE
Confidence 7899999999999999887642 111 2468999999875432 123332 233445568899
Q ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCccE-EEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHH
Q psy18164 596 TRAEFEALNEDLFDRVGYPVEQALKSSAVP--MDVISQ-VILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVY 672 (1212)
Q Consensus 596 tR~efe~l~~~l~~~i~~~i~~~L~~a~~~--~~~i~~-ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~ 672 (1212)
+|++|++++.++++++.+.|.++|+.+... .+.++. |+|+||+|++|.+++.|++.|+.++....||+++||+||++
T Consensus 245 ~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~ 324 (335)
T PRK13930 245 SSEEVREALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGK 324 (335)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHH
Confidence 999999999999999999999999987533 234454 99999999999999999999998888888999999999999
Q ss_pred HHHhhc
Q psy18164 673 KAADLS 678 (1212)
Q Consensus 673 ~aa~ls 678 (1212)
.+....
T Consensus 325 ~~~~~~ 330 (335)
T PRK13930 325 ALENLD 330 (335)
T ss_pred HHhChH
Confidence 987543
|
|
| >PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=350.54 Aligned_cols=215 Identities=37% Similarity=0.539 Sum_probs=183.9
Q ss_pred EEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEecCceeEccchhhhhccCCCChHHHHHHHhCCCCCCHHHH
Q psy18164 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQ 117 (1212)
Q Consensus 38 vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~~~~ 117 (1212)
|||||||||||+||++.+| .++++.|..|++++||+|+|.++++++|..|...+.++|.++++++|||||+.++++.++
T Consensus 1 viGID~Gt~~~~va~~~~~-~~~ii~~~~~~~~~ps~v~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~ 79 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNG-KPEIILNEEGKRKTPSVVSFSDNERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQ 79 (602)
T ss_dssp EEEEEE-SSEEEEEEEETT-EEEEE--TTS-SSEESEEEEESSCEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHH
T ss_pred CEEEEeccCCEEEEEEEec-cccccccccccccccceeeEeeecccCCcchhhhcccccccccccccccccccccccccc
Confidence 6899999999999999977 579999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCceeeeccCCCceEEEEcCC-cceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHHHH
Q psy18164 118 LFKSRFPYYDIVADEERGTIVFKTND-NELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGE 196 (1212)
Q Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~Aa~ 196 (1212)
...+.+||..+...++...+.+...+ ...++|+++++++|++|++.++.++|..+.++|||||++|++.||+++++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~ 159 (602)
T PF00012_consen 80 KEKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAE 159 (602)
T ss_dssp HHHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHH
T ss_pred hhhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhccccccc
Confidence 99999998644333444444444332 36899999999999999999999999999999999999999999999999999
Q ss_pred HcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEeecccccc
Q psy18164 197 LAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERG 258 (1212)
Q Consensus 197 ~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~~~~~~~~ 258 (1212)
.|||++++||+||+|||++|++.+.. .++++|||||||||+|+|++++..+..++++
T Consensus 160 ~agl~~~~li~Ep~Aaa~~y~~~~~~-----~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~ 216 (602)
T PF00012_consen 160 LAGLNVLRLINEPTAAALAYGLERSD-----KGKTVLVVDFGGGTFDVSVVEFSNGQFEVLA 216 (602)
T ss_dssp HTT-EEEEEEEHHHHHHHHTTTTSSS-----SEEEEEEEEEESSEEEEEEEEEETTEEEEEE
T ss_pred ccccccceeecccccccccccccccc-----cccceeccccccceEeeeehhcccccccccc
Confidence 99999999999999999999876554 3579999999999999999999977665554
|
Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B .... |
| >COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=339.71 Aligned_cols=192 Identities=33% Similarity=0.464 Sum_probs=169.8
Q ss_pred ceEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEecC-ceeEccchhhhhccCCCChHHHHHHHhCCCCCCH
Q psy18164 36 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG-ERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 114 (1212)
Q Consensus 36 ~~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~~-~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~ 114 (1212)
+.+|||||||||||||+++++..+.++.|..|.+.+||+|+|..+ ++++|..|+.++..+|.++++.+||++|+....
T Consensus 5 ~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~~- 83 (579)
T COG0443 5 KKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSNG- 83 (579)
T ss_pred ceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCCC-
Confidence 457999999999999999977457888999999999999999755 699999999999999999999999999985110
Q ss_pred HHHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHH
Q psy18164 115 VVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 194 (1212)
Q Consensus 115 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~A 194 (1212)
....+.+ +++.++|+++.+++|.+|++.++.++|..+.++|||||+||++.||.++++|
T Consensus 84 --------------------~~~~~~~-~~~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A 142 (579)
T COG0443 84 --------------------LKISVEV-DGKKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDA 142 (579)
T ss_pred --------------------Ccceeee-CCeeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHH
Confidence 0011221 3478999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEeeccc
Q psy18164 195 GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTK 255 (1212)
Q Consensus 195 a~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~~~~~ 255 (1212)
|++|||+++++++||+|||++|++... .+.+|||||+||||||+||+++..|-..
T Consensus 143 ~~iaGl~vlrlinEPtAAAlayg~~~~------~~~~vlV~DlGGGTfDvSll~~~~g~~e 197 (579)
T COG0443 143 ARIAGLNVLRLINEPTAAALAYGLDKG------KEKTVLVYDLGGGTFDVSLLEIGDGVFE 197 (579)
T ss_pred HHHcCCCeEEEecchHHHHHHhHhccC------CCcEEEEEEcCCCCEEEEEEEEcCCEEE
Confidence 999999999999999999999998765 2569999999999999999999966333
|
|
| >CHL00094 dnaK heat shock protein 70 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=342.43 Aligned_cols=211 Identities=31% Similarity=0.457 Sum_probs=183.4
Q ss_pred eEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEe-cCceeEccchhhhhccCCCChHHHHHHHhCCCCCCHH
Q psy18164 37 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 115 (1212)
Q Consensus 37 ~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~-~~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~~ 115 (1212)
.+||||||||||+||++.+|+ +++++|..|.+.+||+|+|. ++.+++|..|+.++..+|.++++++||+||+.+++
T Consensus 3 ~viGIDlGTt~s~va~~~~g~-~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~-- 79 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVMEGGK-PTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE-- 79 (621)
T ss_pred ceEEEEeCcccEEEEEEECCE-EEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH--
Confidence 589999999999999999885 67999999999999999996 46799999999999999999999999999999865
Q ss_pred HHHHHhcCCceeeeccCCCceEEEEc-CCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHH
Q psy18164 116 VQLFKSRFPYYDIVADEERGTIVFKT-NDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 194 (1212)
Q Consensus 116 ~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~A 194 (1212)
+....+.+||. ++.. .++.+.+.+ ..+..++|+++++++|++|++.|+.++|.++.++|||||++|++.||+++++|
T Consensus 80 ~~~~~~~~~~~-v~~~-~~g~i~~~~~~~~~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~A 157 (621)
T CHL00094 80 ISEEAKQVSYK-VKTD-SNGNIKIECPALNKDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDA 157 (621)
T ss_pred HHhhhhcCCeE-EEEC-CCCCEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 45556778874 4433 344555544 24678999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEeecccccc
Q psy18164 195 GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERG 258 (1212)
Q Consensus 195 a~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~~~~~~~~ 258 (1212)
|+.|||+++++|+||+|||++|+.... .+.++|||||||||||+||+++..+...+++
T Consensus 158 a~~AGl~v~~li~EptAAAlay~~~~~------~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla 215 (621)
T CHL00094 158 GKIAGLEVLRIINEPTAASLAYGLDKK------NNETILVFDLGGGTFDVSILEVGDGVFEVLS 215 (621)
T ss_pred HHHcCCceEEEeccHHHHHHHhccccC------CCCEEEEEEcCCCeEEEEEEEEcCCEEEEEE
Confidence 999999999999999999999987543 2458999999999999999999876655543
|
|
| >KOG0104|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=315.68 Aligned_cols=234 Identities=59% Similarity=0.955 Sum_probs=220.1
Q ss_pred HHHHHhhhcccCceEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEecCceeEccchhhhhccCCCChHHHH
Q psy18164 24 VLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYF 103 (1212)
Q Consensus 24 ~~~~~~~~~~~~~~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~~~~~iG~~A~~~~~~~p~~~~~~~ 103 (1212)
++++++...+...+|++||+|+.++.||++.+|-|.+|++|..+.|++|++|+|.++.|++|.+|...+.++|++++..+
T Consensus 10 l~~~~~~~~~~~~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~~eR~fg~~A~~ma~r~P~~~~~~l 89 (902)
T KOG0104|consen 10 LLLCLFVALSSALAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKGGERIFGEAAASMATRFPQSTYRQL 89 (902)
T ss_pred HHHHHHhcccchhhheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecCCceehhhhhhhhhhcCcHHHHHHH
Confidence 33444455666678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCC
Q psy18164 104 LDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYF 183 (1212)
Q Consensus 104 KrllG~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f 183 (1212)
+.+||+..+++.+..+.+.+|++.++.++.++.+.|.+.+...|++|++++|+|.+.+..|+.+...++.++|||||.+|
T Consensus 90 ~~llgk~~~~~~v~ly~~~~p~~e~v~d~~rstV~F~i~d~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F 169 (902)
T KOG0104|consen 90 KDLLGKSLDDPTVDLYQKRFPFFELVEDPQRSTVVFKISDQEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFF 169 (902)
T ss_pred HHHhCcccCCcHHHHHHhcCCceeecccCccceEEEEeCCccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCccc
Confidence 99999999999999999999999999998899999999887899999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEeecccccc
Q psy18164 184 NQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERG 258 (1212)
Q Consensus 184 ~~~qr~~l~~Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~~~~~~~~ 258 (1212)
++.||+++.+||++||++++.||++-+|||+.|++.++..++. .++++||||||.|++.++++.|.-.+.+..|
T Consensus 170 ~qaeR~all~Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~-~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g 243 (902)
T KOG0104|consen 170 NQAERRALLQAAQIAGLNVLQLINDGTAVALNYGVFRRKEINE-TPQHYIFYDMGSGSTSATIVSYQLVKTKEQG 243 (902)
T ss_pred CHHHHHHHHHHHHhcCchhhhhhccchHHHhhhhhhccccCCC-CceEEEEEecCCCceeEEEEEEEeecccccc
Confidence 9999999999999999999999999999999999998776654 4689999999999999999999999999887
|
|
| >PRK01433 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=336.17 Aligned_cols=200 Identities=23% Similarity=0.330 Sum_probs=167.8
Q ss_pred eEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEecCceeEccchhhhhccCCCChHHHHHHHhCCCCCCH--
Q psy18164 37 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP-- 114 (1212)
Q Consensus 37 ~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~-- 114 (1212)
.+|||||||||||||++.+| .+++++|..|.+.+||+|+|.+++++||..| +++++||++|+++++.
T Consensus 20 ~viGIDlGTT~S~va~~~~~-~~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A----------ti~~~KrliG~~~~~~~~ 88 (595)
T PRK01433 20 IAVGIDFGTTNSLIAIATNR-KVKVIKSIDDKELIPTTIDFTSNNFTIGNNK----------GLRSIKRLFGKTLKEILN 88 (595)
T ss_pred eEEEEEcCcccEEEEEEeCC-eeEEEECCCCCeecCeEEEEcCCCEEECchh----------hHHHHHHHhCCCchhhcc
Confidence 48999999999999999876 5789999999999999999988889999987 7999999999998762
Q ss_pred --HHHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHH
Q psy18164 115 --VVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSML 192 (1212)
Q Consensus 115 --~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~ 192 (1212)
.+....+. .... ..+.+.+.. +++.++|+++++++|++|++.|+.++|.++.++|||||++|++.||++++
T Consensus 89 ~~~~~~~~k~-----~~~~-~~~~~~~~~-~~~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~~ 161 (595)
T PRK01433 89 TPALFSLVKD-----YLDV-NSSELKLNF-ANKQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVM 161 (595)
T ss_pred chhhHhhhhh-----eeec-CCCeeEEEE-CCEEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHH
Confidence 22111111 1111 123334443 46789999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEeeccccccch
Q psy18164 193 KAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGMK 260 (1212)
Q Consensus 193 ~Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~~~~~~~~~~ 260 (1212)
+||+.||++++++|+||+|||++|+..... .+++|||||||||||+|++++..+...+++..
T Consensus 162 ~Aa~~AGl~v~~li~EPtAAAlay~~~~~~------~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~ 223 (595)
T PRK01433 162 LAAKIAGFEVLRLIAEPTAAAYAYGLNKNQ------KGCYLVYDLGGGTFDVSILNIQEGIFQVIATN 223 (595)
T ss_pred HHHHHcCCCEEEEecCcHHHHHHHhcccCC------CCEEEEEECCCCcEEEEEEEEeCCeEEEEEEc
Confidence 999999999999999999999999875422 35899999999999999999998776666543
|
|
| >KOG0101|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-32 Score=322.89 Aligned_cols=214 Identities=31% Similarity=0.475 Sum_probs=194.1
Q ss_pred cCceEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEecCceeEccchhhhhccCCCChHHHHHHHhCCCCCC
Q psy18164 34 YGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDS 113 (1212)
Q Consensus 34 ~~~~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~ 113 (1212)
..+.++|||||||+||++++.++ .++++.|..|++.+||+|+|.++++++|.+|..+...+|.++++++||++|+.+++
T Consensus 5 ~~~~aiGIdlGtT~s~v~v~~~~-~v~iian~~g~rttPs~vaf~~~e~~vg~~a~~qv~~np~ntv~~~krliGr~f~d 83 (620)
T KOG0101|consen 5 PESVAIGIDLGTTYSCVGVYQSG-KVEIIANDQGNRTTPSVVAFTDTERLIGDAAKNQVARNPDNTVFDAKRLIGRFFDD 83 (620)
T ss_pred cccceeeEeccCccceeeeEcCC-cceeeeccccCccccceeeecccccchhhhhhhhhhcCCcceeeehhhhcCccccc
Confidence 34678999999999999999976 58999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCceeeeccCCCceEEEEcC-CcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHH
Q psy18164 114 PVVQLFKSRFPYYDIVADEERGTIVFKTN-DNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSML 192 (1212)
Q Consensus 114 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~ 192 (1212)
+.++..+++|||......+..+.+.+... ..+.++|+++.++.|.++++.++.++|..+.++|+|||+||++.||+++.
T Consensus 84 ~~v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at~ 163 (620)
T KOG0101|consen 84 PEVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAATK 163 (620)
T ss_pred hhhHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHHHHH
Confidence 99999999999964433444566666554 35789999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEee
Q psy18164 193 KAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVV 252 (1212)
Q Consensus 193 ~Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~~ 252 (1212)
+|+.+||++++++|+||+|||++|++... .....+|||+|+||||||||++.+..|
T Consensus 164 ~A~~iaGl~vlrii~EPtAaalAygl~k~----~~~~~~VlI~DlGggtfdvs~l~i~gG 219 (620)
T KOG0101|consen 164 DAALIAGLNVLRIINEPTAAALAYGLDKK----VLGERNVLIFDLGGGTFDVSVLSLEGG 219 (620)
T ss_pred HHHHhcCCceeeeecchHHHHHHhhcccc----ccceeeEEEEEcCCCceeeeeEEeccc
Confidence 99999999999999999999999997655 224578999999999999999999875
|
|
| >KOG0103|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-31 Score=308.98 Aligned_cols=226 Identities=32% Similarity=0.464 Sum_probs=205.3
Q ss_pred ceEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEecCceeEccchhhhhccCCCChHHHHHHHhCCCCCCHH
Q psy18164 36 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 115 (1212)
Q Consensus 36 ~~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~~ 115 (1212)
|+|+|||||..||.+|+.+.+ .+++|.|+.++|.+|++|+|....+++|.+|..+...|+.|++..+||++|+.|++|.
T Consensus 1 msvvG~D~Gn~nc~iavAr~~-gIe~i~nd~Snr~TPa~vsfg~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~ 79 (727)
T KOG0103|consen 1 MSVVGFDLGNENCYIAVARQG-GIEVVANDYSNRETPAIVSFGPKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPE 79 (727)
T ss_pred CCceeeeccccceeeeeeccC-CceeeeeccccccCcceeeeccccceeeeccccceeecccccchhhhhhhccccCChH
Confidence 679999999999999999988 5899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCceeeeccCCCceEEEEc-CCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHH
Q psy18164 116 VQLFKSRFPYYDIVADEERGTIVFKT-NDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 194 (1212)
Q Consensus 116 ~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~A 194 (1212)
++.....+|+..+...++...+.+.. +..+.+++++|++|||.+|++.|+..+..++.+|||+||+||++.||+++.+|
T Consensus 80 ~q~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldA 159 (727)
T KOG0103|consen 80 VQREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDA 159 (727)
T ss_pred hhhcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhH
Confidence 99999999996454444444443333 46788999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceEEEecchhHHHHHhhhhcccCC-CCCCCeEEEEEecCCceEEEEEEEEEeeccccccchhh
Q psy18164 195 GELAGLKVLQLMNDYTAVALNYGIFKRKDF-NETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGMKIS 262 (1212)
Q Consensus 195 a~~AGl~~~~li~EP~AAal~y~~~~~~~~-~~~~~~~vlV~D~GggT~Dvsvv~~~~~~~~~~~~~~~ 262 (1212)
|+.|||++++|++|.+|+|++||..+.... +...+++|+++|||..++.+|++.|..|+.+++++..-
T Consensus 160 A~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D 228 (727)
T KOG0103|consen 160 ARIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFD 228 (727)
T ss_pred HhhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccCcceeeeeecc
Confidence 999999999999999999999998776532 24457999999999999999999999999999988654
|
|
| >PRK11678 putative chaperone; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-29 Score=297.25 Aligned_cols=179 Identities=20% Similarity=0.223 Sum_probs=155.2
Q ss_pred EEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEe---------------------------------------
Q psy18164 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH--------------------------------------- 78 (1212)
Q Consensus 38 vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~--------------------------------------- 78 (1212)
++|||||||||++|++.+|+ ++++++..|.+.+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~~~~~-~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGK-PRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDID 80 (450)
T ss_pred eEEEecCccceeeEEeeCCc-eEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhccccccc
Confidence 47999999999999999775 68989999999999999993
Q ss_pred --cCceeEccchhhhhccCCCCh--HHHHHHHhCCCCCCHHHHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHH
Q psy18164 79 --KGERTFGEDAQIIGTRFPSNS--YGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVA 154 (1212)
Q Consensus 79 --~~~~~iG~~A~~~~~~~p~~~--~~~~KrllG~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~ 154 (1212)
++..++|..|......+|..+ +..+||++|...-. .+....++++++
T Consensus 81 ~~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~-----------------------------~~~~~~~e~l~a 131 (450)
T PRK11678 81 VTAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLK-----------------------------PQQVALFEDLVC 131 (450)
T ss_pred ccccccchhHHHHHhhccCCCCceEEecchhhhccCCCC-----------------------------ccceeCHHHHHH
Confidence 456789999999999999888 77999999974111 012234899999
Q ss_pred HHHHHHHHHHHHhcCCccccEEEccCCCCC-----HHHHHH---HHHHHHHcCCceEEEecchhHHHHHhhhhcccCCCC
Q psy18164 155 MLLHKAREYASVSAGQVINEAVIIVPGYFN-----QIERQS---MLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNE 226 (1212)
Q Consensus 155 ~~L~~l~~~a~~~~~~~~~~~VitVPa~f~-----~~qr~~---l~~Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~ 226 (1212)
++|++|++.++.++|.++.++|||||++|+ +.||++ +++||+.|||+++++++||+|||++|+....
T Consensus 132 ~iL~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~----- 206 (450)
T PRK11678 132 AMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLT----- 206 (450)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccC-----
Confidence 999999999999999999999999999998 777765 7999999999999999999999999985322
Q ss_pred CCCeEEEEEecCCceEEEEEEEEEee
Q psy18164 227 TNPVHVMFYDMGAWSTTVSIVSYQVV 252 (1212)
Q Consensus 227 ~~~~~vlV~D~GggT~Dvsvv~~~~~ 252 (1212)
.++++|||||||||+|+||+++.++
T Consensus 207 -~~~~vlV~D~GGGT~D~Svv~~~~~ 231 (450)
T PRK11678 207 -EEKRVLVVDIGGGTTDCSMLLMGPS 231 (450)
T ss_pred -CCCeEEEEEeCCCeEEEEEEEecCc
Confidence 2568999999999999999999764
|
|
| >PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-27 Score=268.54 Aligned_cols=306 Identities=22% Similarity=0.319 Sum_probs=217.9
Q ss_pred EEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEecC---cEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCH
Q psy18164 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG---ERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 361 (1212)
Q Consensus 285 vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~~---~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~ 361 (1212)
-+||||||+++.|+.-..| ++.++ ||+|+++.. -..+|.+|..+.-+.|.+.
T Consensus 3 ~igIDLGT~~t~i~~~~~G----iv~~e------pSvVA~~~~~~~i~avG~~A~~m~gktp~~i--------------- 57 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYVKGKG----IVLNE------PSVVAYDKDTGKILAVGDEAKAMLGKTPDNI--------------- 57 (326)
T ss_dssp EEEEEE-SSEEEEEETTTE----EEEEE------ES-EEEETTT--EEEESHHHHTTTTS-GTTE---------------
T ss_pred ceEEecCcccEEEEECCCC----EEEec------CcEEEEECCCCeEEEEhHHHHHHhhcCCCcc---------------
Confidence 4899999999999544444 55554 999999753 2458999977655544332
Q ss_pred HHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHH
Q psy18164 362 VVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 441 (1212)
Q Consensus 362 ~v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~A 441 (1212)
.+...+.+| .+.--++...+|+++.+.+.......-..++|+||+.-++.+|+++.+|
T Consensus 58 ---------------------~~~~Pl~~G-vI~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a 115 (326)
T PF06723_consen 58 ---------------------EVVRPLKDG-VIADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDA 115 (326)
T ss_dssp ---------------------EEE-SEETT-EESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHH
T ss_pred ---------------------EEEccccCC-cccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHH
Confidence 111222333 2333456677777777766553223445799999999999999999999
Q ss_pred HHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecC
Q psy18164 442 GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYD 521 (1212)
Q Consensus 442 a~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d 521 (1212)
+..||.+-+.||.||.|||+..+..-.. +...|++|+||||||++++.+. | ++... .
T Consensus 116 ~~~aGa~~V~li~ep~AaAiGaGl~i~~------~~g~miVDIG~GtTdiavislg-------g---------iv~s~-s 172 (326)
T PF06723_consen 116 ARQAGARKVYLIEEPIAAAIGAGLDIFE------PRGSMIVDIGGGTTDIAVISLG-------G---------IVASR-S 172 (326)
T ss_dssp HHHTT-SEEEEEEHHHHHHHHTT--TTS------SS-EEEEEE-SS-EEEEEEETT-------E---------EEEEE-E
T ss_pred HHHcCCCEEEEecchHHHHhcCCCCCCC------CCceEEEEECCCeEEEEEEECC-------C---------EEEEE-E
Confidence 9999999999999999999998886433 6889999999999999999742 2 22222 2
Q ss_pred CCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCc----eeEEEEe--ecccCcceEEEE
Q psy18164 522 RTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANN----EHFAQIE--GLIDEIDFKLLV 595 (1212)
Q Consensus 522 ~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~----~~~i~ie--~l~~~~d~~~~i 595 (1212)
...||++||++|.+|+.++|+- . +. .+.||++|+.++.-. ...+.|. .+..+..-++.|
T Consensus 173 i~~gG~~~DeaI~~~ir~~y~l--~----Ig---------~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i 237 (326)
T PF06723_consen 173 IRIGGDDIDEAIIRYIREKYNL--L----IG---------ERTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEI 237 (326)
T ss_dssp ES-SHHHHHHHHHHHHHHHHSE--E---------------HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEE
T ss_pred EEecCcchhHHHHHHHHHhhCc--c----cC---------HHHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEE
Confidence 4789999999999999999954 1 11 246899999886432 2244554 456788889999
Q ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCc--cEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHH
Q psy18164 596 TRAEFEALNEDLFDRVGYPVEQALKSSAVPM-DVI--SQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVY 672 (1212)
Q Consensus 596 tR~efe~l~~~l~~~i~~~i~~~L~~a~~~~-~~i--~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~ 672 (1212)
+-+++.+.|.+.+.++...|+++|+...-.. .|| +.|+|+||+++++.+.+.|++.+|.++...-||..|||.||..
T Consensus 238 ~~~ev~~ai~~~~~~I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~ 317 (326)
T PF06723_consen 238 TSSEVREAIEPPVDQIVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGK 317 (326)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHH
Confidence 9999999999999999999999999763111 132 4699999999999999999999999999999999999999986
Q ss_pred HHH
Q psy18164 673 KAA 675 (1212)
Q Consensus 673 ~aa 675 (1212)
...
T Consensus 318 ~l~ 320 (326)
T PF06723_consen 318 LLE 320 (326)
T ss_dssp TTC
T ss_pred HHh
Confidence 654
|
In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A. |
| >COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.5e-25 Score=237.01 Aligned_cols=311 Identities=21% Similarity=0.295 Sum_probs=241.6
Q ss_pred ceEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEec--Cc---EeecHHHHHhhhhCCCchHhHhHHhcCCC
Q psy18164 283 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK--GE---RTFGEDAQIIGTRFPSNSYGYFLDLLGKS 357 (1212)
Q Consensus 283 ~~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~--~~---r~~G~~A~~~~~~~p~~t~~~~k~llG~~ 357 (1212)
+..+||||||.|+.|..-..| |++|. ||+|++.. +. ..+|.+|+.+.-+.|.|.
T Consensus 6 s~diGIDLGTanTlV~~k~kg----IVl~e------PSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni----------- 64 (342)
T COG1077 6 SNDIGIDLGTANTLVYVKGKG----IVLNE------PSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNI----------- 64 (342)
T ss_pred cccceeeecccceEEEEcCce----EEecC------ceEEEEeecCCCceEEEehHHHHHHhccCCCCc-----------
Confidence 457999999999999777444 77877 99999965 32 358999976544444432
Q ss_pred CCCHHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcC-CccceEEEecCCCCCHHHHH
Q psy18164 358 IDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAG-QVINEAVIIVPGYFNQIERQ 436 (1212)
Q Consensus 358 ~~~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~-~~i~~~VItVP~~f~~~qR~ 436 (1212)
.......++ .+.--++...+|+|+.+....... .....++|.||..-++-+|+
T Consensus 65 -------------------------~aiRPmkdG-VIAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErr 118 (342)
T COG1077 65 -------------------------VAIRPMKDG-VIADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERR 118 (342)
T ss_pred -------------------------eEEeecCCc-EeecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHH
Confidence 112223343 344456677778888777654333 34456999999999999999
Q ss_pred HHHHHHHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEE
Q psy18164 437 SMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVL 516 (1212)
Q Consensus 437 al~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl 516 (1212)
|+++|++.||.+.+.++.||.|||+..+..-.. +..-||||+||||||++++++. | +
T Consensus 119 Ai~ea~~~aGa~~V~lieEp~aAAIGaglpi~e------p~G~mvvDIGgGTTevaVISlg-------g---------i- 175 (342)
T COG1077 119 AIKEAAESAGAREVYLIEEPMAAAIGAGLPIME------PTGSMVVDIGGGTTEVAVISLG-------G---------I- 175 (342)
T ss_pred HHHHHHHhccCceEEEeccHHHHHhcCCCcccC------CCCCEEEEeCCCceeEEEEEec-------C---------E-
Confidence 999999999999999999999999988775543 5667999999999999999975 4 2
Q ss_pred EEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhcc--------CCceeEEEEeecccC
Q psy18164 517 GVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLS--------ANNEHFAQIEGLIDE 588 (1212)
Q Consensus 517 ~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS--------~n~~~~i~ie~l~~~ 588 (1212)
.+.....+||+.||..|.+|+.++|+- -. -.+ .||++|+..- ...+..+.-.++..+
T Consensus 176 v~~~Sirv~GD~~De~Ii~yvr~~~nl--~I------Ge~-------taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~G 240 (342)
T COG1077 176 VSSSSVRVGGDKMDEAIIVYVRKKYNL--LI------GER-------TAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTG 240 (342)
T ss_pred EEEeeEEEecchhhHHHHHHHHHHhCe--ee------cHH-------HHHHHHHHhcccccccCCccceeeEEeeecccC
Confidence 223335799999999999999999864 11 122 3666665432 123344555667778
Q ss_pred cceEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCCccE-EEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhH
Q psy18164 589 IDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSA--VPMDVISQ-VILVGAGTRVPKVQEKITKVVGVELSKNLNTDEA 665 (1212)
Q Consensus 589 ~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~--~~~~~i~~-ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~dea 665 (1212)
..-.++++-++..+.+++.+++|.+.++.+|+... +..+-++. ++|+||++-+..+.+.|.+..+..+...-||-.|
T Consensus 241 lPk~i~i~s~ev~eal~~~v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et~~pv~ia~~pL~~ 320 (342)
T COG1077 241 LPKTITINSEEIAEALEEPLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEETGVPVIIADDPLTC 320 (342)
T ss_pred CCeeEEEcHHHHHHHHHHHHHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhccCCeEEECCChHHH
Confidence 88889999999999999999999999999999863 44555666 9999999999999999999999888888999999
Q ss_pred HHhhHHHHHHhhc
Q psy18164 666 AALGAVYKAADLS 678 (1212)
Q Consensus 666 VA~GAa~~aa~ls 678 (1212)
||.|+.+....+.
T Consensus 321 Va~G~G~~le~~~ 333 (342)
T COG1077 321 VAKGTGKALEALD 333 (342)
T ss_pred HHhccchhhhhhH
Confidence 9999998887665
|
|
| >TIGR02529 EutJ ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-26 Score=250.10 Aligned_cols=204 Identities=19% Similarity=0.257 Sum_probs=173.8
Q ss_pred eeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHHHHHcCCCeeeeechhHHHHHhhcccccccCC
Q psy18164 393 LYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFN 472 (1212)
Q Consensus 393 ~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~ 472 (1212)
.+.--+..+++|+++++.++.+++.++.++|||||++|++.||+++.+|++.||++++.+++||.|+|++|+..
T Consensus 35 ~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~------ 108 (239)
T TIGR02529 35 IVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK------ 108 (239)
T ss_pred eEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC------
Confidence 34456778999999999999999989999999999999999999999999999999999999999999988531
Q ss_pred CCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCC
Q psy18164 473 ETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVF 552 (1212)
Q Consensus 473 ~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~ 552 (1212)
..+|+|+||||||+++++- | . ++. ..+..+||++||+.|++++. - +
T Consensus 109 -----~~~vvDiGggtt~i~i~~~--------G------~--i~~-~~~~~~GG~~it~~Ia~~~~----i------~-- 154 (239)
T TIGR02529 109 -----NGAVVDVGGGTTGISILKK--------G------K--VIY-SADEPTGGTHMSLVLAGAYG----I------S-- 154 (239)
T ss_pred -----CcEEEEeCCCcEEEEEEEC--------C------e--EEE-EEeeecchHHHHHHHHHHhC----C------C--
Confidence 2599999999999999862 3 2 222 34568999999998865442 1 1
Q ss_pred CCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccCcceEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEE
Q psy18164 553 ENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQV 632 (1212)
Q Consensus 553 ~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~V 632 (1212)
+.+||++|+.++ +.+++.++|+++++++...|++.|++.+ ++.|
T Consensus 155 ---------~~~AE~~K~~~~----------------------~~~~~~~~i~~~~~~i~~~i~~~l~~~~-----~~~v 198 (239)
T TIGR02529 155 ---------FEEAEEYKRGHK----------------------DEEEIFPVVKPVYQKMASIVKRHIEGQG-----VKDL 198 (239)
T ss_pred ---------HHHHHHHHHhcC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCEE
Confidence 257899998654 1466788999999999999999998653 5789
Q ss_pred EEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHH
Q psy18164 633 ILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVY 672 (1212)
Q Consensus 633 iLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~ 672 (1212)
+|+||++++|.+++.|++.||.++..+.||++++|.|||+
T Consensus 199 ~LtGG~a~ipgl~e~l~~~lg~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 199 YLVGGACSFSGFADVFEKQLGLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred EEECchhcchhHHHHHHHHhCCCcccCCCCCeehhheeec
Confidence 9999999999999999999998888899999999999986
|
|
| >PRK15080 ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.5e-24 Score=237.62 Aligned_cols=202 Identities=21% Similarity=0.281 Sum_probs=173.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHHHHHcCCCeeeeechhHHHHHhhcccccccCCCCCC
Q psy18164 397 EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNP 476 (1212)
Q Consensus 397 eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~ 476 (1212)
.+.....|+++++.++.+++.++..++++||++|+..+|+++.+|++.||+++..+++||.|++..|... .
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~---------~ 136 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID---------N 136 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC---------C
Confidence 5667789999999999998888999999999999999999999999999999999999999999887441 1
Q ss_pred eEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHH
Q psy18164 477 VHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPR 556 (1212)
Q Consensus 477 ~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~r 556 (1212)
.+++|||||||+++++.- | .+ +. ..+..+||++||+.|++++. - +
T Consensus 137 --~~vvDIGggtt~i~v~~~--------g------~~--~~-~~~~~~GG~~it~~Ia~~l~----i------~------ 181 (267)
T PRK15080 137 --GAVVDIGGGTTGISILKD--------G------KV--VY-SADEPTGGTHMSLVLAGAYG----I------S------ 181 (267)
T ss_pred --cEEEEeCCCcEEEEEEEC--------C------eE--EE-EecccCchHHHHHHHHHHhC----C------C------
Confidence 589999999999999751 3 22 22 24679999999999987752 1 1
Q ss_pred HHHHHHHHHHHhhhhccCCceeEEEEeecccCcceEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEc
Q psy18164 557 AVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVG 636 (1212)
Q Consensus 557 a~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvG 636 (1212)
+.+||++|+.++ +++++.++++++++++.+.|++.|+.. .++.|+|+|
T Consensus 182 -----~~eAE~lK~~~~----------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtG 229 (267)
T PRK15080 182 -----FEEAEQYKRDPK----------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVG 229 (267)
T ss_pred -----HHHHHHHHhccC----------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEEC
Confidence 357889988653 357899999999999999999999864 578999999
Q ss_pred CCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHH
Q psy18164 637 AGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKA 674 (1212)
Q Consensus 637 GssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~a 674 (1212)
|+||+|.+++.+++.||.++....||+.++|.|||++|
T Consensus 230 G~s~lpgl~e~l~~~lg~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 230 GTCCLPGFEEVFEKQTGLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred CcccchhHHHHHHHHhCCCcccCCCchHHHHHHHHhhC
Confidence 99999999999999999888889999999999999875
|
|
| >TIGR01174 ftsA cell division protein FtsA | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.8e-20 Score=218.01 Aligned_cols=194 Identities=18% Similarity=0.212 Sum_probs=152.0
Q ss_pred HHHHHHHHHHHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCe
Q psy18164 433 IERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQ 512 (1212)
Q Consensus 433 ~qR~al~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~ 512 (1212)
...+.+.+|++.||+++..++.||.|+|++|..... . +..++++|+||||||++++.- | .
T Consensus 158 ~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~~-----~-~~~~~vvDiG~gtt~i~i~~~--------g------~ 217 (371)
T TIGR01174 158 TILRNLVKCVERCGLEVDNIVLSGLASAIAVLTEDE-----K-ELGVCLIDIGGGTTDIAVYTG--------G------S 217 (371)
T ss_pred HHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcch-----h-cCCEEEEEeCCCcEEEEEEEC--------C------E
Confidence 456788899999999999999999999998854221 2 567999999999999999962 2 2
Q ss_pred EEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCC------ceeEEEEeecc
Q psy18164 513 VSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSAN------NEHFAQIEGLI 586 (1212)
Q Consensus 513 ~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n------~~~~i~ie~l~ 586 (1212)
+. ......+||++||..|++.+. ..+.+||++|+.++.. .+..+.+..+
T Consensus 218 ~~---~~~~i~~GG~~it~~i~~~l~---------------------~~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~- 272 (371)
T TIGR01174 218 IR---YTKVIPIGGNHITKDIAKALR---------------------TPLEEAERIKIKYGCASIPLEGPDENIEIPSV- 272 (371)
T ss_pred EE---EEeeecchHHHHHHHHHHHhC---------------------CCHHHHHHHHHHeeEecccCCCCCCEEEeccC-
Confidence 21 123457999999998876431 1256799999998763 2345556554
Q ss_pred cCcceEEEEeHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCCCccE-EEEEcCCcCCHHHHHHHHHHhCCcc--cC----
Q psy18164 587 DEIDFKLLVTRAEFEALNEDLFDRVGYPVE-QALKSSAVPMDVISQ-VILVGAGTRVPKVQEKITKVVGVEL--SK---- 658 (1212)
Q Consensus 587 ~~~d~~~~itR~efe~l~~~l~~~i~~~i~-~~L~~a~~~~~~i~~-ViLvGGssriP~Vq~~l~~~fg~~i--~~---- 658 (1212)
+.+....|+|++|++++++.++++...|+ +.|+.++.. ++++. |+|+||+|++|.|++.+++.||.++ ..
T Consensus 273 -~~~~~~~is~~~l~~ii~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P~~~ 350 (371)
T TIGR01174 273 -GERPPRSLSRKELAEIIEARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLPQNI 350 (371)
T ss_pred -CCCCCeEEcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEECCCcc
Confidence 24667899999999999999999999997 999999877 67777 9999999999999999999999432 11
Q ss_pred ------CCCchhHHHhhHHHH
Q psy18164 659 ------NLNTDEAAALGAVYK 673 (1212)
Q Consensus 659 ------~~n~deaVA~GAa~~ 673 (1212)
.-+|..++|.|.++|
T Consensus 351 ~~~~~~~~~p~~~~a~Gl~~~ 371 (371)
T TIGR01174 351 GGLTEDVNDPEYSTAVGLLLY 371 (371)
T ss_pred CCchhhcCCcHHHHHHHHHhC
Confidence 126788888888764
|
This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70. |
| >PRK09472 ftsA cell division protein FtsA; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-18 Score=205.44 Aligned_cols=195 Identities=15% Similarity=0.155 Sum_probs=145.4
Q ss_pred HHHHHHHHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEE
Q psy18164 436 QSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSV 515 (1212)
Q Consensus 436 ~al~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~v 515 (1212)
+.+..|++.|||++..++.||.|+|+++..... . ...++++||||||||+++++ .| .
T Consensus 169 ~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~e-----~-~~gv~vvDiGggtTdisv~~--------~G------~--- 225 (420)
T PRK09472 169 KNIVKAVERCGLKVDQLIFAGLASSYAVLTEDE-----R-ELGVCVVDIGGGTMDIAVYT--------GG------A--- 225 (420)
T ss_pred HHHHHHHHHcCCeEeeEEehhhHHHHHhcChhh-----h-hcCeEEEEeCCCceEEEEEE--------CC------E---
Confidence 344679999999999999999999998854321 2 56799999999999999997 13 2
Q ss_pred EEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhcc----CC--ceeEEEEeecccCc
Q psy18164 516 LGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLS----AN--NEHFAQIEGLIDEI 589 (1212)
Q Consensus 516 l~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS----~n--~~~~i~ie~l~~~~ 589 (1212)
+.+.....+||++|++.|++.+. - -+.+||++|.... .. .+..+.+..+.+..
T Consensus 226 l~~~~~i~~GG~~it~dIa~~l~----i-----------------~~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~~ 284 (420)
T PRK09472 226 LRHTKVIPYAGNVVTSDIAYAFG----T-----------------PPSDAEAIKVRHGCALGSIVGKDESVEVPSVGGRP 284 (420)
T ss_pred EEEEeeeechHHHHHHHHHHHhC----c-----------------CHHHHHHHHHhcceeccccCCCCceeEecCCCCCC
Confidence 22333467999999988875541 1 1357899986532 21 23456666543322
Q ss_pred ceEEEEeHHHHHHHHHHHHHHHHHHHH-------HHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccC----
Q psy18164 590 DFKLLVTRAEFEALNEDLFDRVGYPVE-------QALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSK---- 658 (1212)
Q Consensus 590 d~~~~itR~efe~l~~~l~~~i~~~i~-------~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~---- 658 (1212)
...|+|.+|.+++.+-++.+.+.|+ ..|..+++....++.|+|+||++++|.|++.+++.|+.++..
T Consensus 285 --~~~i~~~~l~~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~~P~ 362 (420)
T PRK09472 285 --PRSLQRQTLAEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGAPL 362 (420)
T ss_pred --CeEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEeCCc
Confidence 2489999999999996555555554 566777888888999999999999999999999999843221
Q ss_pred --------CCCchhHHHhhHHHHHHh
Q psy18164 659 --------NLNTDEAAALGAVYKAAD 676 (1212)
Q Consensus 659 --------~~n~deaVA~GAa~~aa~ 676 (1212)
.-+|..|+|.|.++++..
T Consensus 363 ~~~g~~~~~~~P~~ata~Gl~~~~~~ 388 (420)
T PRK09472 363 NITGLTDYAQEPYYSTAVGLLHYGKE 388 (420)
T ss_pred ccCCChhhcCCcHHHHHHHHHHHhhh
Confidence 247999999999999873
|
|
| >PRK13929 rod-share determining protein MreBH; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-18 Score=201.02 Aligned_cols=161 Identities=23% Similarity=0.337 Sum_probs=126.3
Q ss_pred eEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEecC-c--eeEccchhhhhccCCCChHHHHHHHhCCCCCC
Q psy18164 37 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG-E--RTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDS 113 (1212)
Q Consensus 37 ~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~~-~--~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~ 113 (1212)
..+||||||+|+++ +.+++++ +.+ .||+|+|+++ . ..+|.+|+....++|.++... +
T Consensus 5 ~~~giDlGt~~~~i--~~~~~~~--~~~------~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~--~-------- 64 (335)
T PRK13929 5 TEIGIDLGTANILV--YSKNKGI--ILN------EPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV--R-------- 64 (335)
T ss_pred CeEEEEcccccEEE--EECCCcE--Eec------CCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE--e--------
Confidence 35899999999985 4456543 444 3999999743 2 579999999888888764331 1
Q ss_pred HHHHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccc--cEEEccCCCCCHHHHHHH
Q psy18164 114 PVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVIN--EAVIIVPGYFNQIERQSM 191 (1212)
Q Consensus 114 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~--~~VitVPa~f~~~qr~~l 191 (1212)
|. ..|. +.--++++.+|+++++.++..++..+. .+|||||++|+..||+++
T Consensus 65 ----------pi----------------~~G~-I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l 117 (335)
T PRK13929 65 ----------PM----------------KDGV-IADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAI 117 (335)
T ss_pred ----------cC----------------CCCc-cCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHH
Confidence 11 1121 122278899999999998888776554 799999999999999999
Q ss_pred HHHHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEE
Q psy18164 192 LKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQ 250 (1212)
Q Consensus 192 ~~Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~ 250 (1212)
.+|++.||++++.+++||+|||++|+.... .+..+||+|+||||+|++++.+.
T Consensus 118 ~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~------~~~~~lvvDiG~gtt~v~vi~~~ 170 (335)
T PRK13929 118 SDAVKNCGAKNVHLIEEPVAAAIGADLPVD------EPVANVVVDIGGGTTEVAIISFG 170 (335)
T ss_pred HHHHHHcCCCeeEeecCHHHHHHhcCCCcC------CCceEEEEEeCCCeEEEEEEEeC
Confidence 999999999999999999999999976322 24579999999999999999864
|
|
| >PRK13928 rod shape-determining protein Mbl; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.2e-17 Score=189.60 Aligned_cols=159 Identities=23% Similarity=0.309 Sum_probs=118.5
Q ss_pred EEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEecC--c-eeEccchhhhhccCCCChHHHHHHHhCCCCCCHH
Q psy18164 39 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG--E-RTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 115 (1212)
Q Consensus 39 vGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~~--~-~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~~ 115 (1212)
+||||||+||+++....+ .++. .||+|+|... . ..+|.+|+....+.|.+...
T Consensus 6 ~gIDlGt~~~~i~~~~~~---~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~-------------- 61 (336)
T PRK13928 6 IGIDLGTANVLVYVKGKG---IVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVA-------------- 61 (336)
T ss_pred eEEEcccccEEEEECCCC---EEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEE--------------
Confidence 799999999999886333 3442 4999999743 3 46899998776665554321
Q ss_pred HHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHHH
Q psy18164 116 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 195 (1212)
Q Consensus 116 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~Aa 195 (1212)
..|. .+| .+...+++..+|+++++.+..........+|||||++|+..||+++++|+
T Consensus 62 ------~~pi-------~~G----------~i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~ 118 (336)
T PRK13928 62 ------IRPL-------RDG----------VIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAA 118 (336)
T ss_pred ------EccC-------CCC----------eEecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 0111 111 23344677888888886654332223347999999999999999999999
Q ss_pred HHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEE
Q psy18164 196 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQ 250 (1212)
Q Consensus 196 ~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~ 250 (1212)
+.||++.+.+++||+|||++|+.... .+..+||||+||||||+++++..
T Consensus 119 ~~ag~~~~~li~ep~Aaa~~~g~~~~------~~~~~lVvDiGggttdvsvv~~g 167 (336)
T PRK13928 119 EQAGAKKVYLIEEPLAAAIGAGLDIS------QPSGNMVVDIGGGTTDIAVLSLG 167 (336)
T ss_pred HHcCCCceEecccHHHHHHHcCCccc------CCCeEEEEEeCCCeEEEEEEEeC
Confidence 99999999999999999999986432 23468999999999999999874
|
|
| >TIGR00904 mreB cell shape determining protein, MreB/Mrl family | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-16 Score=185.35 Aligned_cols=159 Identities=21% Similarity=0.343 Sum_probs=113.4
Q ss_pred EEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEecC-----c--eeEccchhhhhccCCCChHHHHHHHhCCCC
Q psy18164 39 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG-----E--RTFGEDAQIIGTRFPSNSYGYFLDLLGKSI 111 (1212)
Q Consensus 39 vGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~~-----~--~~iG~~A~~~~~~~p~~~~~~~KrllG~~~ 111 (1212)
+||||||+||+++....| + ++ ..||+|+|.++ . ..+|.+|+....+.|.+... +
T Consensus 5 ~giDlGt~~s~i~~~~~~--~-~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~~--~------- 65 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGRG--I-VL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIVA--I------- 65 (333)
T ss_pred eEEecCcceEEEEECCCC--E-EE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEEE--E-------
Confidence 899999999999885333 2 33 26999999733 3 67999998776555544210 0
Q ss_pred CCHHHHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHH
Q psy18164 112 DSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSM 191 (1212)
Q Consensus 112 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l 191 (1212)
.|. .+| ..... +.+..+++|++.......+.....+|+|||++|+..||+++
T Consensus 66 -----------~pi-------~~G---------~i~d~-~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~ 117 (333)
T TIGR00904 66 -----------RPM-------KDG---------VIADF-EVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAV 117 (333)
T ss_pred -----------ecC-------CCC---------EEEcH-HHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHH
Confidence 111 112 11121 34455556555544332222223799999999999999999
Q ss_pred HHHHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEE
Q psy18164 192 LKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQ 250 (1212)
Q Consensus 192 ~~Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~ 250 (1212)
++|++.+|++.+.+++||+|||++|+.... .+..++|||+||||+|++++++.
T Consensus 118 ~~~~~~ag~~~~~li~ep~aaa~~~g~~~~------~~~~~lVvDiG~gttdvs~v~~~ 170 (333)
T TIGR00904 118 KESALSAGAREVYLIEEPMAAAIGAGLPVE------EPTGSMVVDIGGGTTEVAVISLG 170 (333)
T ss_pred HHHHHHcCCCeEEEecCHHHHHHhcCCccc------CCceEEEEEcCCCeEEEEEEEeC
Confidence 999999999999999999999999976332 23578999999999999999875
|
A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK. |
| >PRK13927 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.8e-16 Score=180.28 Aligned_cols=159 Identities=23% Similarity=0.319 Sum_probs=113.0
Q ss_pred EEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEecC---ceeEccchhhhhccCCCChHHHHHHHhCCCCCCH
Q psy18164 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG---ERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 114 (1212)
Q Consensus 38 vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~~---~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~ 114 (1212)
.|||||||+|++++.. |+.. ++ .+||+|+|.+. ..++|.+|.....++|.++..
T Consensus 7 ~igIDlGt~~~~i~~~--~~~~-~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~------------- 63 (334)
T PRK13927 7 DLGIDLGTANTLVYVK--GKGI-VL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVA------------- 63 (334)
T ss_pred eeEEEcCcceEEEEEC--CCcE-EE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEE-------------
Confidence 4899999999998553 3333 32 27999999643 348999998776665544211
Q ss_pred HHHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHH
Q psy18164 115 VVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 194 (1212)
Q Consensus 115 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~A 194 (1212)
..|. .+|..... +.+..+++++......... ....+|+|+|++|++.||++++.|
T Consensus 64 -------~~pi----------------~~G~i~d~-~~~~~ll~~~~~~~~~~~~-~~~~~vi~vP~~~~~~~r~~~~~a 118 (334)
T PRK13927 64 -------IRPM----------------KDGVIADF-DVTEKMLKYFIKKVHKNFR-PSPRVVICVPSGITEVERRAVRES 118 (334)
T ss_pred -------EecC----------------CCCeecCH-HHHHHHHHHHHHHHhhccC-CCCcEEEEeCCCCCHHHHHHHHHH
Confidence 0111 11111111 3445555555554433222 124799999999999999999999
Q ss_pred HHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEE
Q psy18164 195 GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQ 250 (1212)
Q Consensus 195 a~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~ 250 (1212)
++.||++.+.+++||+|||++|+.... .+..++|||+||||||++++++.
T Consensus 119 ~~~ag~~~~~li~ep~aaa~~~g~~~~------~~~~~lvvDiGggttdvs~v~~~ 168 (334)
T PRK13927 119 ALGAGAREVYLIEEPMAAAIGAGLPVT------EPTGSMVVDIGGGTTEVAVISLG 168 (334)
T ss_pred HHHcCCCeeccCCChHHHHHHcCCccc------CCCeEEEEEeCCCeEEEEEEecC
Confidence 999999999999999999999986432 23468999999999999999875
|
|
| >PRK13930 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.1e-15 Score=175.69 Aligned_cols=159 Identities=26% Similarity=0.324 Sum_probs=116.8
Q ss_pred EEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEec---CceeEccchhhhhccCCCChHHHHHHHhCCCCCCHH
Q psy18164 39 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK---GERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 115 (1212)
Q Consensus 39 vGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~---~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~~ 115 (1212)
+||||||++|++++. |+.+ ++ + +||+|++.+ ...++|.+|.......|.+...
T Consensus 11 vgiDlGt~~t~i~~~--~~~~-~~-~------~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~-------------- 66 (335)
T PRK13930 11 IGIDLGTANTLVYVK--GKGI-VL-N------EPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIEA-------------- 66 (335)
T ss_pred eEEEcCCCcEEEEEC--CCCE-EE-e------cCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeEE--------------
Confidence 899999999999986 3332 32 1 599999964 2368999998776554433110
Q ss_pred HHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHHH
Q psy18164 116 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 195 (1212)
Q Consensus 116 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~Aa 195 (1212)
..|+ .+|.... -+.+..+++++.+.+..........+|+|+|++|+..+|+.+.+|+
T Consensus 67 ------~~pi----------------~~G~i~d-~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~~ 123 (335)
T PRK13930 67 ------IRPL----------------KDGVIAD-FEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAA 123 (335)
T ss_pred ------eecC----------------CCCeEcC-HHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 0111 1121111 2457778888876665543444578999999999999999999999
Q ss_pred HHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEE
Q psy18164 196 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQ 250 (1212)
Q Consensus 196 ~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~ 250 (1212)
+.+|++.+.+++||+|||++|+..... ...+||||+||||||++++...
T Consensus 124 e~~g~~~~~lv~ep~AAa~a~g~~~~~------~~~~lVvDiG~gttdvs~v~~g 172 (335)
T PRK13930 124 EHAGAREVYLIEEPMAAAIGAGLPVTE------PVGNMVVDIGGGTTEVAVISLG 172 (335)
T ss_pred HHcCCCeEEecccHHHHHHhcCCCcCC------CCceEEEEeCCCeEEEEEEEeC
Confidence 999999999999999999998764321 2357999999999999999764
|
|
| >COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.7e-15 Score=159.58 Aligned_cols=161 Identities=26% Similarity=0.347 Sum_probs=120.8
Q ss_pred eEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEec--C---ceeEccchhhhhccCCCChHHHHHHHhCCCC
Q psy18164 37 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK--G---ERTFGEDAQIIGTRFPSNSYGYFLDLLGKSI 111 (1212)
Q Consensus 37 ~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~--~---~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~ 111 (1212)
..+|||+||.||.|+.- |+. ++++. ||+|++.. + -..+|.+|+....+.|.+..
T Consensus 7 ~diGIDLGTanTlV~~k--~kg--IVl~e------PSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni~----------- 65 (342)
T COG1077 7 NDIGIDLGTANTLVYVK--GKG--IVLNE------PSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNIV----------- 65 (342)
T ss_pred ccceeeecccceEEEEc--Cce--EEecC------ceEEEEeecCCCceEEEehHHHHHHhccCCCCce-----------
Confidence 35899999999999876 332 55564 99999965 2 24589999877666665521
Q ss_pred CCHHHHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcC-CccccEEEccCCCCCHHHHHH
Q psy18164 112 DSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAG-QVINEAVIIVPGYFNQIERQS 190 (1212)
Q Consensus 112 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~-~~~~~~VitVPa~f~~~qr~~ 190 (1212)
.+....+|-+ .--+++..+++|+.+......+ ....+++++||..-++-.|++
T Consensus 66 ----------------aiRPmkdGVI----------Ad~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrA 119 (342)
T COG1077 66 ----------------AIRPMKDGVI----------ADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRA 119 (342)
T ss_pred ----------------EEeecCCcEe----------ecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHH
Confidence 1111122222 2237888899999988875433 344579999999999999999
Q ss_pred HHHHHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEE
Q psy18164 191 MLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQ 250 (1212)
Q Consensus 191 l~~Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~ 250 (1212)
+++|++.||.+.+.+++||.|||+..++.-.. +..-||||+||||+|++++++.
T Consensus 120 i~ea~~~aGa~~V~lieEp~aAAIGaglpi~e------p~G~mvvDIGgGTTevaVISlg 173 (342)
T COG1077 120 IKEAAESAGAREVYLIEEPMAAAIGAGLPIME------PTGSMVVDIGGGTTEVAVISLG 173 (342)
T ss_pred HHHHHHhccCceEEEeccHHHHHhcCCCcccC------CCCCEEEEeCCCceeEEEEEec
Confidence 99999999999999999999999977653322 2346999999999999998764
|
|
| >COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-13 Score=158.40 Aligned_cols=206 Identities=25% Similarity=0.305 Sum_probs=162.1
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeec
Q psy18164 422 AVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKT 501 (1212)
Q Consensus 422 ~VItVP~~f~~~qR~al~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~ 501 (1212)
.++|+|..+ -+.|.+|.+.+|+++..++-+|-|+|.+....... ...++++||||||||+++++-
T Consensus 158 hvit~~~~~----~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~dEk------elGv~lIDiG~GTTdIai~~~----- 222 (418)
T COG0849 158 HVITGPKNI----LENLEKCVERAGLKVDNIVLEPLASALAVLTEDEK------ELGVALIDIGGGTTDIAIYKN----- 222 (418)
T ss_pred EEEEcchHH----HHHHHHHHHHhCCCeeeEEEehhhhhhhccCcccH------hcCeEEEEeCCCcEEEEEEEC-----
Confidence 466666554 45688899999999999999999999876443322 577999999999999999982
Q ss_pred ccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccC------C
Q psy18164 502 KERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSA------N 575 (1212)
Q Consensus 502 ~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~------n 575 (1212)
| . +.+.+...+||++++..|+.-|.--| ..||++|...-. .
T Consensus 223 ---G------~---l~~~~~ipvgG~~vT~DIa~~l~t~~---------------------~~AE~iK~~~g~a~~~~~~ 269 (418)
T COG0849 223 ---G------A---LRYTGVIPVGGDHVTKDIAKGLKTPF---------------------EEAERIKIKYGSALISLAD 269 (418)
T ss_pred ---C------E---EEEEeeEeeCccHHHHHHHHHhCCCH---------------------HHHHHHHHHcCccccCcCC
Confidence 3 2 23333468999999999987764333 358888876532 2
Q ss_pred ceeEEEEeecccCcceEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCc
Q psy18164 576 NEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVE 655 (1212)
Q Consensus 576 ~~~~i~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~ 655 (1212)
.+..+.++...++. ..++||.++.+++++-+..+..+++..|+++++...-...|+|+||++.+|.+.+..++.|+.+
T Consensus 270 ~~~~i~v~~vg~~~--~~~~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~ 347 (418)
T COG0849 270 DEETIEVPSVGSDI--PRQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRP 347 (418)
T ss_pred CcceEecccCCCcc--cchhhHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCCc
Confidence 34456777664444 7789999999999999999999999999999998777889999999999999999999999842
Q ss_pred --ccC----------CCCchhHHHhhHHHHHHhh
Q psy18164 656 --LSK----------NLNTDEAAALGAVYKAADL 677 (1212)
Q Consensus 656 --i~~----------~~n~deaVA~GAa~~aa~l 677 (1212)
+.. ..||..+.|.|..++++..
T Consensus 348 vRig~P~~~~Gl~d~~~~p~fs~avGl~~~~~~~ 381 (418)
T COG0849 348 VRLGVPLNIVGLTDIARNPAFSTAVGLLLYGALM 381 (418)
T ss_pred eEeCCCccccCchhhccCchhhhhHHHHHHHhhc
Confidence 222 2467889999999998854
|
|
| >PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.4e-15 Score=170.34 Aligned_cols=158 Identities=25% Similarity=0.384 Sum_probs=106.0
Q ss_pred EEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEecC---ceeEccchhhhhccCCCChHHHHHHHhCCCCCCH
Q psy18164 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG---ERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 114 (1212)
Q Consensus 38 vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~~---~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~ 114 (1212)
-+||||||+|+.++.-..| ++.+. ||+|+++.. -..+|.+|+....+.|.+.
T Consensus 3 ~igIDLGT~~t~i~~~~~G----iv~~e------pSvVA~~~~~~~i~avG~~A~~m~gktp~~i--------------- 57 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYVKGKG----IVLNE------PSVVAYDKDTGKILAVGDEAKAMLGKTPDNI--------------- 57 (326)
T ss_dssp EEEEEE-SSEEEEEETTTE----EEEEE------ES-EEEETTT--EEEESHHHHTTTTS-GTTE---------------
T ss_pred ceEEecCcccEEEEECCCC----EEEec------CcEEEEECCCCeEEEEhHHHHHHhhcCCCcc---------------
Confidence 3899999999998653333 33333 999999753 3458999987766665441
Q ss_pred HHHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHH
Q psy18164 115 VVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 194 (1212)
Q Consensus 115 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~A 194 (1212)
.++..-.+|-+ .=.+++..+|+++.+.+.....-.-.+++++||+.-++.+|+++.+|
T Consensus 58 ------------~~~~Pl~~GvI----------~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a 115 (326)
T PF06723_consen 58 ------------EVVRPLKDGVI----------ADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDA 115 (326)
T ss_dssp ------------EEE-SEETTEE----------SSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHH
T ss_pred ------------EEEccccCCcc----------cCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHH
Confidence 11111111211 11368888999998888764222335799999999999999999999
Q ss_pred HHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEE
Q psy18164 195 GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 195 a~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~ 248 (1212)
+..+|.+.+.|++||.|||+..++.-.. +...||+|+||||+|++++.
T Consensus 116 ~~~aGa~~V~li~ep~AaAiGaGl~i~~------~~g~miVDIG~GtTdiavis 163 (326)
T PF06723_consen 116 ARQAGARKVYLIEEPIAAAIGAGLDIFE------PRGSMIVDIGGGTTDIAVIS 163 (326)
T ss_dssp HHHTT-SEEEEEEHHHHHHHHTT--TTS------SS-EEEEEE-SS-EEEEEEE
T ss_pred HHHcCCCEEEEecchHHHHhcCCCCCCC------CCceEEEEECCCeEEEEEEE
Confidence 9999999999999999999988864332 45789999999999999995
|
In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A. |
| >cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.5e-13 Score=158.40 Aligned_cols=300 Identities=16% Similarity=0.112 Sum_probs=188.6
Q ss_pred EEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEec----------CcEeecHHHHHhhhhCCCchHhHhHHhcC
Q psy18164 286 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK----------GERTFGEDAQIIGTRFPSNSYGYFLDLLG 355 (1212)
Q Consensus 286 vGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~----------~~r~~G~~A~~~~~~~p~~t~~~~k~llG 355 (1212)
|.||+||.++++++...+.|.-+ +||+|+... ...++|.+|......
T Consensus 2 iViD~Gs~~~r~G~a~~~~p~~~---------~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~-------------- 58 (371)
T cd00012 2 VVIDNGSGTIKAGFAGEDAPRVV---------FPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGL-------------- 58 (371)
T ss_pred EEEECCCCeEEEEeCCCCCCceE---------eeccceeecCcccccccCCCceEEchhhhhCCCC--------------
Confidence 68999999999999976645434 466665531 345678776542100
Q ss_pred CCCCCHHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHH
Q psy18164 356 KSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIER 435 (1212)
Q Consensus 356 ~~~~~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR 435 (1212)
.+.-++|+ .+|. +.--+.+..+++++....-. ....-..++|++|..++..+|
T Consensus 59 ---------~~~~~~P~----------------~~G~-i~d~~~~e~~~~~~~~~~l~-~~~~~~~vvl~~p~~~~~~~r 111 (371)
T cd00012 59 ---------GLELIYPI----------------EHGI-VVDWDDMEKIWDHLFFNELK-VNPEEHPVLLTEPPLNPKSNR 111 (371)
T ss_pred ---------ceEEcccc----------------cCCE-EeCHHHHHHHHHHHHHHhcC-CCCCCCceEEecCCCCCHHHH
Confidence 01111222 1221 22233445566665543211 111235799999999998888
Q ss_pred HHHHH-HHHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEE
Q psy18164 436 QSMLK-AGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVS 514 (1212)
Q Consensus 436 ~al~~-Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~ 514 (1212)
+.+.+ +.+..|+..+.+++++.+|+++|+. ..-+|+|+|+++|+++.+. .| .-
T Consensus 112 ~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~-----------~~~lVVDiG~~~t~i~pv~--------~G-------~~ 165 (371)
T cd00012 112 EKTTEIMFETFNVPALYVAIQAVLSLYASGR-----------TTGLVVDSGDGVTHVVPVY--------DG-------YV 165 (371)
T ss_pred HHHHHHhhccCCCCEEEEechHHHHHHhcCC-----------CeEEEEECCCCeeEEEEEE--------CC-------EE
Confidence 88877 4666899999999999999988753 4689999999999998886 24 11
Q ss_pred EEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCce--------------eEE
Q psy18164 515 VLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNE--------------HFA 580 (1212)
Q Consensus 515 vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~--------------~~i 580 (1212)
+........+||+++|+.|.+++..+... .+.. .-...++.+|+.+..-.. ...
T Consensus 166 ~~~~~~~~~~GG~~l~~~l~~~l~~~~~~-----~~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~ 233 (371)
T cd00012 166 LPHAIKRLDLAGRDLTRYLKELLRERGYE-----LNSS-------DEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLE 233 (371)
T ss_pred chhhheeccccHHHHHHHHHHHHHhcCCC-----ccch-------hHHHHHHHHHHhheeecCCHHHHHHhhhccCCccc
Confidence 22223346899999999999998665321 0111 112235555555321100 000
Q ss_pred EEeecccCcceEEEEeHHHHHHHHHHHHH---------HHHHHHHHHHHhcCC--CCCCccEEEEEcCCcCCHHHHHHHH
Q psy18164 581 QIEGLIDEIDFKLLVTRAEFEALNEDLFD---------RVGYPVEQALKSSAV--PMDVISQVILVGAGTRVPKVQEKIT 649 (1212)
Q Consensus 581 ~ie~l~~~~d~~~~itR~efe~l~~~l~~---------~i~~~i~~~L~~a~~--~~~~i~~ViLvGGssriP~Vq~~l~ 649 (1212)
..-.+-++ ..+.++.+.| .+++-+|+ .+.+.|.++|..+.. ...-++.|+|+||+|++|.+.+.|.
T Consensus 234 ~~~~lpd~--~~i~~~~er~-~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~ 310 (371)
T cd00012 234 KTYELPDG--RTIKVGNERF-RAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQ 310 (371)
T ss_pred eeEECCCC--eEEEEChHHh-hChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHH
Confidence 01111122 2455665544 33344443 778888888887643 2334678999999999999999999
Q ss_pred HHhCC----------cccCCCCchhHHHhhHHHHHHh
Q psy18164 650 KVVGV----------ELSKNLNTDEAAALGAVYKAAD 676 (1212)
Q Consensus 650 ~~fg~----------~i~~~~n~deaVA~GAa~~aa~ 676 (1212)
+.++. .+....++..++-+||+++|..
T Consensus 311 ~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 311 KELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred HHHHHhCCcccceEEEEccCCCccccEEeCchhhcCc
Confidence 88861 1234567889999999999964
|
Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins. |
| >TIGR02529 EutJ ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.4e-13 Score=148.29 Aligned_cols=87 Identities=20% Similarity=0.226 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHHHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCe
Q psy18164 151 ELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPV 230 (1212)
Q Consensus 151 ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~ 230 (1212)
+.++++|+++++.++.++|.++.++|+|||++|++.||+++.+|++.||++++.++.||.|||++|+..
T Consensus 40 ~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~----------- 108 (239)
T TIGR02529 40 LGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK----------- 108 (239)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC-----------
Confidence 789999999999999999988999999999999999999999999999999999999999999988631
Q ss_pred EEEEEecCCceEEEEEEE
Q psy18164 231 HVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 231 ~vlV~D~GggT~Dvsvv~ 248 (1212)
..+|+|+||||+|+++++
T Consensus 109 ~~~vvDiGggtt~i~i~~ 126 (239)
T TIGR02529 109 NGAVVDVGGGTTGISILK 126 (239)
T ss_pred CcEEEEeCCCcEEEEEEE
Confidence 259999999999999974
|
|
| >smart00268 ACTIN Actin | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.2e-12 Score=152.69 Aligned_cols=298 Identities=17% Similarity=0.174 Sum_probs=181.1
Q ss_pred EEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEecC---------cEeecHHHHHhhhhCCCchHhHhHHhcC
Q psy18164 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG---------ERTFGEDAQIIGTRFPSNSYGYFLDLLG 355 (1212)
Q Consensus 285 vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~~---------~r~~G~~A~~~~~~~p~~t~~~~k~llG 355 (1212)
+|+||+||.++++++.....|.- .+||+|+.... ..++|.+|.... +
T Consensus 3 ~iviD~Gs~~~k~G~~~~~~P~~---------~~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~---------------~ 58 (373)
T smart00268 3 AIVIDNGSGTIKAGFAGEDEPQV---------VFPSIVGRPKDGKGMVGDAKDTFVGDEAQEKR---------------G 58 (373)
T ss_pred eEEEECCCCcEEEeeCCCCCCcE---------EccceeeEecccccccCCCcceEecchhhhcC---------------C
Confidence 68999999999999986654432 35888877422 235676663210 0
Q ss_pred CCCCCHHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCC--ccceEEEecCCCCCHH
Q psy18164 356 KSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQ--VINEAVIIVPGYFNQI 433 (1212)
Q Consensus 356 ~~~~~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~--~i~~~VItVP~~f~~~ 433 (1212)
. ..-++|+ .++ .+.--+.+..+++++... .++. .-..++|++|...+..
T Consensus 59 ~---------~~~~~P~----------------~~G-~i~d~~~~e~i~~~~~~~---~l~~~~~~~~vll~~p~~~~~~ 109 (373)
T smart00268 59 G---------LELKYPI----------------EHG-IVENWDDMEKIWDYTFFN---ELRVEPEEHPVLLTEPPMNPKS 109 (373)
T ss_pred C---------ceecCCC----------------cCC-EEeCHHHHHHHHHHHHhh---hcCCCCccCeeEEecCCCCCHH
Confidence 0 0011222 122 223345556677776653 2222 2346899999999999
Q ss_pred HHHHHHHHH-HHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCe
Q psy18164 434 ERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQ 512 (1212)
Q Consensus 434 qR~al~~Aa-~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~ 512 (1212)
+|+.+.+.+ +..|+.-+.+++++.+|+++++ ..+-||+|+|+++|+++.+. .|
T Consensus 110 ~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g-----------~~~~lVVDiG~~~t~v~pv~--------~G------- 163 (373)
T smart00268 110 NREKILEIMFETFNFPALYIAIQAVLSLYASG-----------RTTGLVIDSGDGVTHVVPVV--------DG------- 163 (373)
T ss_pred HHHHHHHHhhccCCCCeEEEeccHHHHHHhCC-----------CCEEEEEecCCCcceEEEEE--------CC-------
Confidence 999998887 4679999999999999998875 25689999999999999886 24
Q ss_pred EEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCC---ce------------
Q psy18164 513 VSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSAN---NE------------ 577 (1212)
Q Consensus 513 ~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n---~~------------ 577 (1212)
.-+........+||.++|..|.+++...-.. . +.. .-...++.+|+.+..- ..
T Consensus 164 ~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~---~--~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~ 231 (373)
T smart00268 164 YVLPHAIKRIDIAGRDLTDYLKELLSERGYQ---F--NSS-------AEFEIVREIKEKLCYVAEDFEKEMKKARESSES 231 (373)
T ss_pred EEchhhheeccCcHHHHHHHHHHHHHhcCCC---C--CcH-------HHHHHHHHhhhheeeecCChHHHHHHhhhcccc
Confidence 1122223345899999999999988762100 0 110 0112344444443210 00
Q ss_pred eEEEE-eecccCcceEEEEeHHHHHHHHHHHH---------HHHHHHHHHHHHhcCCC--CCCccEEEEEcCCcCCHHHH
Q psy18164 578 HFAQI-EGLIDEIDFKLLVTRAEFEALNEDLF---------DRVGYPVEQALKSSAVP--MDVISQVILVGAGTRVPKVQ 645 (1212)
Q Consensus 578 ~~i~i-e~l~~~~d~~~~itR~efe~l~~~l~---------~~i~~~i~~~L~~a~~~--~~~i~~ViLvGGssriP~Vq 645 (1212)
..... -.+-++.. +.+..+.| .+++.+| ..+.++|.++|..+... ..-.+.|+|+||+|++|.+.
T Consensus 232 ~~~~~~~~lpdg~~--~~~~~er~-~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~ 308 (373)
T smart00268 232 SKLEKTYELPDGNT--IKVGNERF-RIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFG 308 (373)
T ss_pred cccceeEECCCCCE--EEEChHHe-eCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHH
Confidence 00000 01123332 33433333 2233333 36778888888776422 22246699999999999999
Q ss_pred HHHHHHhCC--------cccCCCCchhHHHhhHHHHHHh
Q psy18164 646 EKITKVVGV--------ELSKNLNTDEAAALGAVYKAAD 676 (1212)
Q Consensus 646 ~~l~~~fg~--------~i~~~~n~deaVA~GAa~~aa~ 676 (1212)
++|.+.+.. .+....++..++=.||+++|..
T Consensus 309 ~RL~~el~~~~p~~~~v~v~~~~~~~~~~W~G~silas~ 347 (373)
T smart00268 309 ERLEKELKQLAPKKLKVKVIAPPERKYSVWLGGSILASL 347 (373)
T ss_pred HHHHHHHHHhCCCCceeEEecCCCCccceEeCcccccCc
Confidence 999888731 2333445566777788777753
|
ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily |
| >COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=7e-13 Score=132.87 Aligned_cols=195 Identities=22% Similarity=0.267 Sum_probs=147.6
Q ss_pred HHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHHHHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEE
Q psy18164 402 MLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMF 481 (1212)
Q Consensus 402 ~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv 481 (1212)
.+.+++++.++.++|.++++..-++|+.--+...+...+..+.||++++..++||||||.-.++ .+-.|
T Consensus 76 eiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l-----------~dg~V 144 (277)
T COG4820 76 EIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQL-----------DDGGV 144 (277)
T ss_pred HHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhcc-----------CCCcE
Confidence 4678999999999999999999999999988888999999999999999999999999954433 22378
Q ss_pred EEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHH
Q psy18164 482 YDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKL 561 (1212)
Q Consensus 482 ~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL 561 (1212)
+|+|||||-+||++ .|+ | -+..|..-||..|...|+-+ ++++
T Consensus 145 VDiGGGTTGIsi~k--------kGk--------V-iy~ADEpTGGtHmtLvlAG~----------ygi~----------- 186 (277)
T COG4820 145 VDIGGGTTGISIVK--------KGK--------V-IYSADEPTGGTHMTLVLAGN----------YGIS----------- 186 (277)
T ss_pred EEeCCCcceeEEEE--------cCc--------E-EEeccCCCCceeEEEEEecc----------cCcC-----------
Confidence 99999999999998 241 2 34456788888887665422 1112
Q ss_pred HHHHHHhhhhccCCceeEEEEeecccCcceEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCC
Q psy18164 562 FKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRV 641 (1212)
Q Consensus 562 ~~~aek~K~~LS~n~~~~i~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssri 641 (1212)
+.+||..|..--...+. | ..+.|+++++.+.+.+.++..+ |.-+.|+||+|.-
T Consensus 187 ~EeAE~~Kr~~k~~~Ei------------f----------~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~ 239 (277)
T COG4820 187 LEEAEQYKRGHKKGEEI------------F----------PVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQ 239 (277)
T ss_pred HhHHHHhhhccccchhc------------c----------cchhHHHHHHHHHHHHHhccCC-----CcceEEecccccC
Confidence 24456555532111111 1 1356899999999999998766 5569999999999
Q ss_pred HHHHHHHHHHhCCcccCCCCchhHHHhhHHH
Q psy18164 642 PKVQEKITKVVGVELSKNLNTDEAAALGAVY 672 (1212)
Q Consensus 642 P~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~ 672 (1212)
|.+.+..++.|+.++..+..|....-+|-|+
T Consensus 240 ~g~e~~Fe~~l~l~v~~P~~p~y~TPLgIA~ 270 (277)
T COG4820 240 PGVEELFEKQLALQVHLPQHPLYMTPLGIAS 270 (277)
T ss_pred ccHHHHHHHHhccccccCCCcceechhhhhh
Confidence 9999999999998777777666555555543
|
|
| >PRK13917 plasmid segregation protein ParM; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.7e-11 Score=136.31 Aligned_cols=213 Identities=16% Similarity=0.165 Sum_probs=138.7
Q ss_pred ccceEE--EecCCCCCHHHH-HHHHHHHHHc------C------CCeeeeechhHHHHHhhcccccccCC--CCCCeEEE
Q psy18164 418 VINEAV--IIVPGYFNQIER-QSMLKAGELA------G------LKVLQLMNDYTAVALNYGIFKRKDFN--ETNPVHVM 480 (1212)
Q Consensus 418 ~i~~~V--ItVP~~f~~~qR-~al~~Aa~~A------G------l~~~~li~EptAaAl~y~~~~~~~~~--~~~~~~vl 480 (1212)
.+.+++ ...|..+...++ ..+++..... | ++.+.++.+|.+|.+++.......+. .-+...++
T Consensus 109 ~~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~il 188 (344)
T PRK13917 109 EVVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVS 188 (344)
T ss_pred CcceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEE
Confidence 344444 589998854443 6666554221 1 12356789999998887665332110 01146789
Q ss_pred EEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHH
Q psy18164 481 FYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAK 560 (1212)
Q Consensus 481 v~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~k 560 (1212)
++|+|+||||++++.- + .+ +....+....|..++...|++++..+... ..+ ++. +
T Consensus 189 vIDIG~~TtD~~v~~~--------~------~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~~~-----~~~--~~~---~ 243 (344)
T PRK13917 189 VIDFGSGTTDLDTIQN--------L------KR-VEEESFVIPKGTIDVYKRIASHISKKEEG-----ASI--TPY---M 243 (344)
T ss_pred EEEcCCCcEEEEEEeC--------c------EE-cccccccccchHHHHHHHHHHHHHhhCCC-----CCC--CHH---H
Confidence 9999999999999861 1 22 12333446789999999999888654321 122 122 1
Q ss_pred HHHHHHHhhhhccCCceeEEEEeecccCcceEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcC
Q psy18164 561 LFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTR 640 (1212)
Q Consensus 561 L~~~aek~K~~LS~n~~~~i~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssr 640 (1212)
+.+. |... .+.+. ...+ +.+ ++++.++++++++++...|...+.. ..+++.|+|+||+++
T Consensus 244 ie~~-------l~~g---~i~~~---~~~~--id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~ 303 (344)
T PRK13917 244 LEKG-------LEYG---ACKLN---QKTV--IDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGAN 303 (344)
T ss_pred HHHH-------HHcC---cEEeC---CCce--Eeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHH
Confidence 2111 2111 11111 1111 122 5778889999999999999888853 347899999999998
Q ss_pred CHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhc
Q psy18164 641 VPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 678 (1212)
Q Consensus 641 iP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls 678 (1212)
+ +++.|++.|+. +...-||..|.|+|...+|..+-
T Consensus 304 l--l~~~lk~~f~~-~~~~~~p~~ANa~G~~~~g~~~~ 338 (344)
T PRK13917 304 I--FFDSLSHWYSD-VEKADESQFANVRGYYKYGELLK 338 (344)
T ss_pred H--HHHHHHHHcCC-eEEcCChHHHHHHHHHHHHHHHh
Confidence 7 88999999984 35567999999999999987554
|
|
| >PTZ00280 Actin-related protein 3; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-09 Score=130.84 Aligned_cols=224 Identities=13% Similarity=0.072 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHHHHHHcCC--ccceEEEecCCCCCHHHHHHHHHHHHHc-CCCeeeeechhHHHHHhhcccccc-cCCC
Q psy18164 398 ELVAMLLHKAREYASVSAGQ--VINEAVIIVPGYFNQIERQSMLKAGELA-GLKVLQLMNDYTAVALNYGIFKRK-DFNE 473 (1212)
Q Consensus 398 el~a~~L~~lk~~a~~~~~~--~i~~~VItVP~~f~~~qR~al~~Aa~~A-Gl~~~~li~EptAaAl~y~~~~~~-~~~~ 473 (1212)
+.+..+++|+... .+.. .-..++||.|..++..+|+.+.+.+-.. |+.-+.+.+++.+++++++..... ...
T Consensus 82 d~~e~l~~~~~~~---~L~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~- 157 (414)
T PTZ00280 82 DLMEKFWEQCIFK---YLRCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELG- 157 (414)
T ss_pred HHHHHHHHHHHHH---hhccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccC-
Confidence 4445566665332 1221 1235899999999999999988776544 889999999999999876432211 110
Q ss_pred CCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCC
Q psy18164 474 TNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFE 553 (1212)
Q Consensus 474 ~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~ 553 (1212)
+ ..+-||+|+|+|+|+++-|- .|. . +........+||++++..|.++|.++.. .+..
T Consensus 158 g-~~tglVVDiG~~~T~i~PV~--------~G~------~-l~~~~~~~~~GG~~lt~~L~~lL~~~~~-------~~~~ 214 (414)
T PTZ00280 158 G-TLTGTVIDSGDGVTHVIPVV--------DGY------V-IGSSIKHIPLAGRDITNFIQQMLRERGE-------PIPA 214 (414)
T ss_pred C-ceeEEEEECCCCceEEEEEE--------CCE------E-cccceEEecCcHHHHHHHHHHHHHHcCC-------CCCc
Confidence 1 34569999999999998775 241 1 1222223579999999999999865421 1111
Q ss_pred CHHHHHHHHHHHHHhhhhccCCc-----------------eeEEEEeecccCcceEEEEeHHHHH---HHHHHHH-----
Q psy18164 554 NPRAVAKLFKEAGRLKNVLSANN-----------------EHFAQIEGLIDEIDFKLLVTRAEFE---ALNEDLF----- 608 (1212)
Q Consensus 554 ~~ra~~kL~~~aek~K~~LS~n~-----------------~~~i~ie~l~~~~d~~~~itR~efe---~l~~~l~----- 608 (1212)
. . .+..++.+|+.+..-. ...+..+...++....+.|..+.|. -|+.|-+
T Consensus 215 ~--~---~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~ 289 (414)
T PTZ00280 215 E--D---ILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEW 289 (414)
T ss_pred H--H---HHHHHHHHHHhcCcccCcHHHHHHHhhcCcccccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCcc
Confidence 1 0 1123555555543210 0011122212233456788887774 2444421
Q ss_pred -HHHHHHHHHHHHhcCCC--CCCccEEEEEcCCcCCHHHHHHHHHHhC
Q psy18164 609 -DRVGYPVEQALKSSAVP--MDVISQVILVGAGTRVPKVQEKITKVVG 653 (1212)
Q Consensus 609 -~~i~~~i~~~L~~a~~~--~~~i~~ViLvGGssriP~Vq~~l~~~fg 653 (1212)
..+.++|.++|..+... .+-.+.|+|+||+|.+|.+.++|.+.+.
T Consensus 290 ~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~ 337 (414)
T PTZ00280 290 TTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVR 337 (414)
T ss_pred CCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHH
Confidence 14677788888776432 2335679999999999999999988876
|
|
| >PRK15080 ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.4e-10 Score=126.87 Aligned_cols=88 Identities=20% Similarity=0.257 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHHHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCC
Q psy18164 150 EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNP 229 (1212)
Q Consensus 150 ~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~ 229 (1212)
.+.+...|+++++.++.++|..+..++++||++|+..+|+++.+|++.||+++..++.||.|++.+|...
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~---------- 135 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID---------- 135 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC----------
Confidence 4678889999999999999988999999999999999999999999999999999999999999887541
Q ss_pred eEEEEEecCCceEEEEEEE
Q psy18164 230 VHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 230 ~~vlV~D~GggT~Dvsvv~ 248 (1212)
..+|+||||||+|+++++
T Consensus 136 -~~~vvDIGggtt~i~v~~ 153 (267)
T PRK15080 136 -NGAVVDIGGGTTGISILK 153 (267)
T ss_pred -CcEEEEeCCCcEEEEEEE
Confidence 259999999999999974
|
|
| >TIGR03739 PRTRC_D PRTRC system protein D | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-08 Score=117.87 Aligned_cols=208 Identities=12% Similarity=0.080 Sum_probs=129.4
Q ss_pred ccceEEEecCCCCCHHHHHHHHHHHHHc---------CCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCc
Q psy18164 418 VINEAVIIVPGYFNQIERQSMLKAGELA---------GLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWS 488 (1212)
Q Consensus 418 ~i~~~VItVP~~f~~~qR~al~~Aa~~A---------Gl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt 488 (1212)
.+..+|+..|..+...+|+.+++..... -++.+.++.+|.+|.++|......... . ...++|+|+|++|
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~-~-~~~~lVIDIG~~T 178 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLT-G-KEQSLIIDPGYFT 178 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCccc-C-cCcEEEEecCCCe
Confidence 4667999999999999999998876532 234467899999998888654322111 2 5678999999999
Q ss_pred eeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHh
Q psy18164 489 TTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRL 568 (1212)
Q Consensus 489 ~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~ 568 (1212)
||+.++. + ..+ +....+....|-.++-..|.+.+.+++.. +...+...+.++ ...-
T Consensus 179 tD~~~~~---------~-----~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~g~------~~~~~~~~i~~~---l~~g 234 (320)
T TIGR03739 179 FDWLVAR---------G-----MRL-VQKRSGSVNGGMSDIYRLLAAEISKDIGT------PAYRDIDRIDLA---LRTG 234 (320)
T ss_pred eeeehcc---------C-----CEE-cccccCCchhHHHHHHHHHHHHHHhhcCC------CCccCHHHHHHH---HHhC
Confidence 9998774 1 123 33444556789888888888888877653 211122222211 1111
Q ss_pred hhhccCCceeEEEEeecccCcceEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHH
Q psy18164 569 KNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKI 648 (1212)
Q Consensus 569 K~~LS~n~~~~i~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l 648 (1212)
|.. .+ + +. .+.|+ +.++ ..+..++++..-|.+.+ + ...+++.|+|+||++. .+++.|
T Consensus 235 ~~~---------~~---~-gk--~~di~-~~~~-~~~~~~~~~v~~i~~~~---~-~~~~~~~Iil~GGGa~--ll~~~l 291 (320)
T TIGR03739 235 KQP---------RI---Y-QK--PVDIK-RCLE-LAETVAQQAVSTMMTWI---G-APESIQNIVLVGGGAF--LFKKAV 291 (320)
T ss_pred Cce---------ee---c-ce--ecCch-HHHH-HHHHHHHHHHHHHHHhc---c-cCCcccEEEEeCCcHH--HHHHHH
Confidence 100 01 1 11 11122 2222 23333333333333333 1 1245899999999988 568999
Q ss_pred HHHhCC-cccCCCCchhHHHhhHHHHH
Q psy18164 649 TKVVGV-ELSKNLNTDEAAALGAVYKA 674 (1212)
Q Consensus 649 ~~~fg~-~i~~~~n~deaVA~GAa~~a 674 (1212)
++.|+. .+....||..|.|+|-..++
T Consensus 292 ~~~f~~~~i~~~~dp~~ANarG~~~~g 318 (320)
T TIGR03739 292 KAAFPKHRIVEVDEPMFANVRGFQIAG 318 (320)
T ss_pred HHHCCCCeeEecCCcHHHHHHHHHHhh
Confidence 999984 45566889999999987665
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region. |
| >PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.8e-09 Score=123.97 Aligned_cols=312 Identities=14% Similarity=0.158 Sum_probs=177.8
Q ss_pred ceEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEecC-----cEeecHHHHHhhhhCCCchHhHhHHhcCCC
Q psy18164 283 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG-----ERTFGEDAQIIGTRFPSNSYGYFLDLLGKS 357 (1212)
Q Consensus 283 ~~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~~-----~r~~G~~A~~~~~~~p~~t~~~~k~llG~~ 357 (1212)
..+|-||+|+.++++++.....|- ..+||+++.... ..++|..+... .+
T Consensus 4 ~~~vViD~Gs~~~k~G~age~~P~---------~v~ps~~~~~~~~~~~~~~~~g~~~~~~---~~-------------- 57 (393)
T PF00022_consen 4 NKPVVIDNGSSTIKAGFAGEDLPR---------VVIPSVVGRPRDKNSSNDYYVGDEALSP---RS-------------- 57 (393)
T ss_dssp SSEEEEEECSSEEEEEETTSSS-S---------EEEESEEEEESSSSSSSSCEETHHHHHT---GT--------------
T ss_pred CCEEEEECCCceEEEEECCCCCCC---------CcCCCccccccccccceeEEeecccccc---hh--------------
Confidence 457899999999999997555343 236888876433 34677663320 00
Q ss_pred CCCHHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHH
Q psy18164 358 IDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQS 437 (1212)
Q Consensus 358 ~~~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~a 437 (1212)
...+.....++ .+.--+.+..+++++.... -.....-..++++.|.+++..+|+.
T Consensus 58 -----------------------~~~~~~p~~~g-~i~~~~~~e~i~~~~~~~~-l~~~~~~~~vll~~~~~~~~~~r~~ 112 (393)
T PF00022_consen 58 -----------------------NLELRSPIENG-VIVDWDALEEIWDYIFSNL-LKVDPSDHPVLLTEPPFNPRSQREK 112 (393)
T ss_dssp -----------------------GEEEEESEETT-EESSHHHHHHHHHHHHHTT-T-SSGGGSEEEEEESTT--HHHHHH
T ss_pred -----------------------heeeeeecccc-ccccccccccccccccccc-cccccccceeeeeccccCCchhhhh
Confidence 00011111122 2222344555666665532 1111233469999999999999987
Q ss_pred HHHHHH-HcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEE
Q psy18164 438 MLKAGE-LAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVL 516 (1212)
Q Consensus 438 l~~Aa~-~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl 516 (1212)
+.+.+- ..|+.-+.+++++.+|+++++.. .-||+|+|++.|.++-|- .|. -+.
T Consensus 113 l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~-----------tglVVD~G~~~t~v~pV~--------dG~-------~~~ 166 (393)
T PF00022_consen 113 LAEILFEKFGVPSVYFIPSPLLALYASGRT-----------TGLVVDIGYSSTSVVPVV--------DGY-------VLP 166 (393)
T ss_dssp HHHHHHHTS--SEEEEEEHHHHHHHHTTBS-----------SEEEEEESSS-EEEEEEE--------TTE-------E-G
T ss_pred hhhhhhcccccceeeeeecccccccccccc-----------cccccccceeeeeeeeee--------ecc-------ccc
Confidence 776654 56999999999999999887553 359999999999988774 241 111
Q ss_pred EEecCCCCChHHHHHHHHHHHHHH-HhhcccCCC---CCC-CCHHHHHHHHHHHHHhhhhc---cC------------Cc
Q psy18164 517 GVGYDRTLGGLEMQIRLRDFLGKK-FNEMKKTTK---DVF-ENPRAVAKLFKEAGRLKNVL---SA------------NN 576 (1212)
Q Consensus 517 ~~~~d~~lGG~~~D~~l~~~l~~~-~~~~~~~~~---d~~-~~~ra~~kL~~~aek~K~~L---S~------------n~ 576 (1212)
.......+||++++..|.++|.++ +.-...... ... ........-...++.+|+.+ +. ..
T Consensus 167 ~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~ 246 (393)
T PF00022_consen 167 HSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENP 246 (393)
T ss_dssp GGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTT
T ss_pred cccccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhccccccccccccccccc
Confidence 112235799999999999999884 111000000 000 00000011111222333221 11 11
Q ss_pred eeEEEEeecccCcceEEEEeHHHHHHHHHHHHH----------------HHHHHHHHHHHhcCCCCC--CccEEEEEcCC
Q psy18164 577 EHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFD----------------RVGYPVEQALKSSAVPMD--VISQVILVGAG 638 (1212)
Q Consensus 577 ~~~i~ie~l~~~~d~~~~itR~efe~l~~~l~~----------------~i~~~i~~~L~~a~~~~~--~i~~ViLvGGs 638 (1212)
..... |-++. .+.+..+.|. +++.+|+ .+.++|.+++..+..... -.+.|+|+||+
T Consensus 247 ~~~~~---lPdg~--~i~~~~er~~-~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~ 320 (393)
T PF00022_consen 247 EKSYE---LPDGQ--TIILGKERFR-IPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGS 320 (393)
T ss_dssp TEEEE----TTSS--EEEESTHHHH-HHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGG
T ss_pred ceecc---ccccc--cccccccccc-ccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEeccc
Confidence 11221 22333 5666666552 3333332 577888888887754322 24689999999
Q ss_pred cCCHHHHHHHHHHhCC--------cccCCC-CchhHHHhhHHHHHHhh
Q psy18164 639 TRVPKVQEKITKVVGV--------ELSKNL-NTDEAAALGAVYKAADL 677 (1212)
Q Consensus 639 sriP~Vq~~l~~~fg~--------~i~~~~-n~deaVA~GAa~~aa~l 677 (1212)
|++|.+.++|.+.+.. ++.... ++..++=.||+++|..-
T Consensus 321 S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~ 368 (393)
T PF00022_consen 321 SLIPGFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLS 368 (393)
T ss_dssp GGSTTHHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSG
T ss_pred ccccchHHHHHHHhhhhhhccccceeccCchhhhhcccccceeeeccc
Confidence 9999999999877641 233344 78899999999999743
|
These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B .... |
| >TIGR01175 pilM type IV pilus assembly protein PilM | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.3e-08 Score=112.65 Aligned_cols=183 Identities=16% Similarity=0.175 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHcCCCeeeeechhHHHHHhhccc-ccccCCCCCCe-EEEEEEcCCCceeEEEEEEEeeecccCCcccc
Q psy18164 432 QIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIF-KRKDFNETNPV-HVMFYDMGAWSTTVSIVSYQVVKTKERGFVET 509 (1212)
Q Consensus 432 ~~qR~al~~Aa~~AGl~~~~li~EptAaAl~y~~~-~~~~~~~~~~~-~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~ 509 (1212)
....+.+.++++.||+++..+.-+|.|.+=.+... ........ .. .++++|+|+++|+++++. .|
T Consensus 142 ~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~-~~~~~~lvdiG~~~t~l~i~~--------~g---- 208 (348)
T TIGR01175 142 KEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTY-RLTDAALVDIGATSSTLNLLH--------PG---- 208 (348)
T ss_pred HHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccc-cCceEEEEEECCCcEEEEEEE--------CC----
Confidence 45677889999999999999988888886555310 00000011 23 499999999999999997 23
Q ss_pred CCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccCc
Q psy18164 510 HPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEI 589 (1212)
Q Consensus 510 ~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~~ 589 (1212)
.+ -......+||.+|+..|.+.+ +- + ..+||+.|..-.... ..
T Consensus 209 --~~---~~~r~i~~G~~~i~~~i~~~~----~~------~-----------~~~Ae~~k~~~~~~~-----------~~ 251 (348)
T TIGR01175 209 --RM---LFTREVPFGTRQLTSELSRAY----GL------N-----------PEEAGEAKQQGGLPL-----------LY 251 (348)
T ss_pred --eE---EEEEEeechHHHHHHHHHHHc----CC------C-----------HHHHHHHHhcCCCCC-----------ch
Confidence 22 222345699999998886433 11 1 245777776422110 00
Q ss_pred ceEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccC---------
Q psy18164 590 DFKLLVTRAEFEALNEDLFDRVGYPVEQALKSS--AVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSK--------- 658 (1212)
Q Consensus 590 d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a--~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~--------- 658 (1212)
+ .+++++.++++..-|.+.|+-. ......++.|+|+||+++++.+.+.+.+.||.++..
T Consensus 252 ~----------~~~~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~~v~~~~P~~~~~~ 321 (348)
T TIGR01175 252 D----------PEVLRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGLPTEVANPFALMAL 321 (348)
T ss_pred h----------HHHHHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCCCeEecChHHhccc
Confidence 0 2345566666666666666432 223346899999999999999999999999832210
Q ss_pred ----------CCCchhHHHhhHHHHH
Q psy18164 659 ----------NLNTDEAAALGAVYKA 674 (1212)
Q Consensus 659 ----------~~n~deaVA~GAa~~a 674 (1212)
..+|..++|.|.|+++
T Consensus 322 ~~~~~~~~~~~~~~~~~~a~Glalr~ 347 (348)
T TIGR01175 322 DAKVDAGRLAVDAPALMTALGLALRG 347 (348)
T ss_pred CccCCHHHHHhhhHHHHHHhhHhhcC
Confidence 1334677888888764
|
This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria. |
| >PTZ00281 actin; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.1e-08 Score=118.35 Aligned_cols=234 Identities=13% Similarity=0.100 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHHHHHHcCC--ccceEEEecCCCCCHHHHHHHHH-HHHHcCCCeeeeechhHHHHHhhcccccccCCCCC
Q psy18164 399 LVAMLLHKAREYASVSAGQ--VINEAVIIVPGYFNQIERQSMLK-AGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETN 475 (1212)
Q Consensus 399 l~a~~L~~lk~~a~~~~~~--~i~~~VItVP~~f~~~qR~al~~-Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~ 475 (1212)
.+..+++|+... .+.. .-..++||-|.+....+|+.+.+ ..+..++.-+.+.+.+.+++++++.
T Consensus 82 ~~e~l~~~~f~~---~l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~---------- 148 (376)
T PTZ00281 82 DMEKIWHHTFYN---ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR---------- 148 (376)
T ss_pred HHHHHHHHHHHh---hccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCC----------
Confidence 344556655431 2222 23468889999999999998877 4456688888999999999877542
Q ss_pred CeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCH
Q psy18164 476 PVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENP 555 (1212)
Q Consensus 476 ~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ 555 (1212)
.+-||+|+|++.|.++-|- .| +.+........+||.+++..|.+.|..+-. .+.. .
T Consensus 149 -~tglVVDiG~~~t~v~PV~--------dG-------~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~-------~~~~-~ 204 (376)
T PTZ00281 149 -TTGIVMDSGDGVSHTVPIY--------EG-------YALPHAILRLDLAGRDLTDYMMKILTERGY-------SFTT-T 204 (376)
T ss_pred -ceEEEEECCCceEEEEEEE--------ec-------ccchhheeeccCcHHHHHHHHHHHHHhcCC-------CCCc-H
Confidence 3569999999999977553 14 122223334579999999999988754311 1111 1
Q ss_pred HHHHHHHHHHHHhhhhccCCc------------eeEEEEe-ecccCcceEEEEeHHHH---HHHHHHHH-----HHHHHH
Q psy18164 556 RAVAKLFKEAGRLKNVLSANN------------EHFAQIE-GLIDEIDFKLLVTRAEF---EALNEDLF-----DRVGYP 614 (1212)
Q Consensus 556 ra~~kL~~~aek~K~~LS~n~------------~~~i~ie-~l~~~~d~~~~itR~ef---e~l~~~l~-----~~i~~~ 614 (1212)
.- ...++.+|+.+.--. ....... .|-|+. .+.|..+.| |-|+.|-+ ..+.++
T Consensus 205 -~~---~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y~LPdg~--~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~ 278 (376)
T PTZ00281 205 -AE---REIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELPDGQ--VITIGNERFRCPEALFQPSFLGMESAGIHET 278 (376)
T ss_pred -HH---HHHHHHHHHhcEEecCCchHHHHhhhcCcccceeEECCCCC--EEEeeHHHeeCcccccChhhcCCCCCCHHHH
Confidence 11 122445555533110 0001111 122222 355666555 23333321 146677
Q ss_pred HHHHHHhcCCC--CCCccEEEEEcCCcCCHHHHHHHHHHhCC--------cccCCCCchhHHHhhHHHHHH
Q psy18164 615 VEQALKSSAVP--MDVISQVILVGAGTRVPKVQEKITKVVGV--------ELSKNLNTDEAAALGAVYKAA 675 (1212)
Q Consensus 615 i~~~L~~a~~~--~~~i~~ViLvGGssriP~Vq~~l~~~fg~--------~i~~~~n~deaVA~GAa~~aa 675 (1212)
|.+++..+... ..-.+.|+|+||+|.+|.+.++|...+.. ++..+.++..++=+||++.|.
T Consensus 279 i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilas 349 (376)
T PTZ00281 279 TYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILAS 349 (376)
T ss_pred HHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCcceEEecCCCCceeEEECcccccC
Confidence 77777766432 22246799999999999999998877641 233445667788889988886
|
|
| >PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.8e-08 Score=112.69 Aligned_cols=183 Identities=22% Similarity=0.295 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHcCCCeeeeechhHHHHHhhcccccccCCC-CCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccC
Q psy18164 432 QIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNE-TNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETH 510 (1212)
Q Consensus 432 ~~qR~al~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~-~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~ 510 (1212)
...-....++++.|||++..+=-++.|.+-.|..... .+.. .....++++|+|+.++.++++. .|
T Consensus 135 k~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~-~~~~~~~~~~~~lvdiG~~~t~~~i~~--------~g----- 200 (340)
T PF11104_consen 135 KEIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEP-QLPDEEDAETVALVDIGASSTTVIIFQ--------NG----- 200 (340)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHH-TST----T-EEEEEEE-SS-EEEEEEE--------TT-----
T ss_pred HHHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHH-hCCcccccceEEEEEecCCeEEEEEEE--------CC-----
Confidence 3456778899999999986664444444333322111 1111 1256899999999999999987 23
Q ss_pred CeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccCcc
Q psy18164 511 PQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEID 590 (1212)
Q Consensus 511 ~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~~d 590 (1212)
.+. ......+||.++++.|++.+.-.+ .+|++.|..-+-..
T Consensus 201 -~~~---f~R~i~~G~~~l~~~i~~~~~i~~---------------------~~Ae~~k~~~~l~~-------------- 241 (340)
T PF11104_consen 201 -KPI---FSRSIPIGGNDLTEAIARELGIDF---------------------EEAEELKRSGGLPE-------------- 241 (340)
T ss_dssp -EEE---EEEEES-SHHHHHHHHHHHTT--H---------------------HHHHHHHHHT------------------
T ss_pred -EEE---EEEEEeeCHHHHHHHHHHhcCCCH---------------------HHHHHHHhcCCCCc--------------
Confidence 222 222357999999999987653332 23555554311000
Q ss_pred eEEEEeHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcc---------cCC
Q psy18164 591 FKLLVTRAEFEALNEDLFDRVGYPVEQALKS--SAVPMDVISQVILVGAGTRVPKVQEKITKVVGVEL---------SKN 659 (1212)
Q Consensus 591 ~~~~itR~efe~l~~~l~~~i~~~i~~~L~~--a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i---------~~~ 659 (1212)
+...+.+.+.++++..-|.+.++- +......|+.|+|+||++++|.+.+.|.+.+|.++ ..+
T Consensus 242 -------~~~~~~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~p~~~~~~~ 314 (340)
T PF11104_consen 242 -------EYDQDALRPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGIPVEVINPFKNIKLD 314 (340)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--GGGGSB--
T ss_pred -------chHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCCceEEcChHHhCccC
Confidence 223445666666666666666652 22335579999999999999999999999998321 111
Q ss_pred C----------CchhHHHhhHHHHH
Q psy18164 660 L----------NTDEAAALGAVYKA 674 (1212)
Q Consensus 660 ~----------n~deaVA~GAa~~a 674 (1212)
. .|+.++|.|.|+..
T Consensus 315 ~~~~~~~~~~~~~~~avA~GLAlR~ 339 (340)
T PF11104_consen 315 PKINSEYLQEDAPQFAVALGLALRG 339 (340)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cccChhhhhhhhhHHHHHHHHhhcC
Confidence 2 26678999998864
|
|
| >PTZ00004 actin-2; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=6e-08 Score=114.74 Aligned_cols=235 Identities=12% Similarity=0.069 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHHHHHHcC--CccceEEEecCCCCCHHHHHHHHHHH-HHcCCCeeeeechhHHHHHhhcccccccCCCC
Q psy18164 398 ELVAMLLHKAREYASVSAG--QVINEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNET 474 (1212)
Q Consensus 398 el~a~~L~~lk~~a~~~~~--~~i~~~VItVP~~f~~~qR~al~~Aa-~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~ 474 (1212)
+.+..++.|+.. ..++ ..-..+++|-|.+.+..+|+.+.+.+ +..|+..+.+++++.+++++++.
T Consensus 81 d~~e~i~~~~~~---~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~--------- 148 (378)
T PTZ00004 81 DDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGR--------- 148 (378)
T ss_pred HHHHHHHHHHHH---hhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCC---------
Confidence 344556666432 1222 22345789999999999998776654 55699999999999999977642
Q ss_pred CCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCC
Q psy18164 475 NPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFEN 554 (1212)
Q Consensus 475 ~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~ 554 (1212)
.+-+|+|+|++.|+++-|- .| +-+.......++||++++..|.+.|..+-. .+..
T Consensus 149 --~tglVVDiG~~~t~v~pV~--------dG-------~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~-------~~~~- 203 (378)
T PTZ00004 149 --TTGIVLDSGDGVSHTVPIY--------EG-------YSLPHAIHRLDVAGRDLTEYMMKILHERGT-------TFTT- 203 (378)
T ss_pred --ceEEEEECCCCcEEEEEEE--------CC-------EEeecceeeecccHHHHHHHHHHHHHhcCC-------CCCc-
Confidence 3459999999999987774 24 222233334579999999999998854311 1111
Q ss_pred HHHHHHHHHHHHHhhhhccCCc------------e-eEEEEee-cccCcceEEEEeHHHHH---HHHHHH------HHHH
Q psy18164 555 PRAVAKLFKEAGRLKNVLSANN------------E-HFAQIEG-LIDEIDFKLLVTRAEFE---ALNEDL------FDRV 611 (1212)
Q Consensus 555 ~ra~~kL~~~aek~K~~LS~n~------------~-~~i~ie~-l~~~~d~~~~itR~efe---~l~~~l------~~~i 611 (1212)
... ...++.+|+.+..-. . ....... |-|+. .+.|..+.|. -++.|- ...+
T Consensus 204 -~~~---~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~~y~lPdg~--~i~l~~er~~~~E~LF~P~~~~~~~~~gi 277 (378)
T PTZ00004 204 -TAE---KEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEESYELPDGT--IITVGSERFRCPEALFQPSLIGKEEPPGI 277 (378)
T ss_pred -HHH---HHHHHHHhhcceeecCCHHHHHhhhhcCccccceEEECCCCC--EEEEcHHHeeCcccccChhhcCccccCCh
Confidence 111 112344444432100 0 0001111 22332 3455665552 344442 2346
Q ss_pred HHHHHHHHHhcCCC--CCCccEEEEEcCCcCCHHHHHHHHHHhCC--------cccCCCCchhHHHhhHHHHHH
Q psy18164 612 GYPVEQALKSSAVP--MDVISQVILVGAGTRVPKVQEKITKVVGV--------ELSKNLNTDEAAALGAVYKAA 675 (1212)
Q Consensus 612 ~~~i~~~L~~a~~~--~~~i~~ViLvGGssriP~Vq~~l~~~fg~--------~i~~~~n~deaVA~GAa~~aa 675 (1212)
.++|.+++..+..+ ..-...|+|+||+|.+|.+.++|...+.. ++..+.++..++=+||++.|.
T Consensus 278 ~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 278 HELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred HHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCccEEEecCCCCceeEEECcccccC
Confidence 67778888776532 22346799999999999999999877641 233345666777788888775
|
|
| >PTZ00466 actin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.2e-07 Score=111.75 Aligned_cols=236 Identities=11% Similarity=0.093 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHHH-HHcCCCeeeeechhHHHHHhhcccccccCCCCCC
Q psy18164 398 ELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNP 476 (1212)
Q Consensus 398 el~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~Aa-~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~ 476 (1212)
+.+..+++|+.+... ....-..+++|-|+.++..+|+.+.+.+ +..|+.-+.+.+.+.+++++++.
T Consensus 87 d~~e~iw~~~f~~l~--v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~----------- 153 (380)
T PTZ00466 87 NDMENIWIHVYNSMK--INSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGK----------- 153 (380)
T ss_pred HHHHHHHHHHHhhcc--cCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCC-----------
Confidence 344556666543211 1112345888999999999999876654 55688888999999999877642
Q ss_pred eEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHH
Q psy18164 477 VHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPR 556 (1212)
Q Consensus 477 ~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~r 556 (1212)
.+-+|+|+|.+.|.++-|- .| +-+........+||++++.-|.+.+.+. ....+. .
T Consensus 154 ~tglVVD~G~~~t~v~PV~--------~G-------~~~~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~----~ 209 (380)
T PTZ00466 154 TNGTVLDCGDGVCHCVSIY--------EG-------YSITNTITRTDVAGRDITTYLGYLLRKN-----GHLFNT----S 209 (380)
T ss_pred ceEEEEeCCCCceEEEEEE--------CC-------EEeecceeEecCchhHHHHHHHHHHHhc-----CCCCCc----H
Confidence 3569999999999987664 24 2222233345799999999999887542 110010 1
Q ss_pred HHHHHHHHHHHhhhhccC---C--------ceeEEEEe-ecccCcceEEEEeHHHHH---HHHHHHH-----HHHHHHHH
Q psy18164 557 AVAKLFKEAGRLKNVLSA---N--------NEHFAQIE-GLIDEIDFKLLVTRAEFE---ALNEDLF-----DRVGYPVE 616 (1212)
Q Consensus 557 a~~kL~~~aek~K~~LS~---n--------~~~~i~ie-~l~~~~d~~~~itR~efe---~l~~~l~-----~~i~~~i~ 616 (1212)
. -+..++.+|+.+.- + ........ .|-|+. .+.|..+.|. -|+.|-+ ..+.++|.
T Consensus 210 ~---~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~~~y~LPdg~--~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~ 284 (380)
T PTZ00466 210 A---EMEVVKNMKENCCYVSFNMNKEKNSSEKALTTLPYILPDGS--QILIGSERYRAPEVLFNPSILGLEYLGLSELIV 284 (380)
T ss_pred H---HHHHHHHHHHhCeEecCChHHHHhhccccccceeEECCCCc--EEEEchHHhcCcccccCccccCCCCCCHHHHHH
Confidence 1 11223444544321 0 00000111 122232 3556666662 2333311 14567777
Q ss_pred HHHHhcCCC--CCCccEEEEEcCCcCCHHHHHHHHHHhCC--------cccCCCCchhHHHhhHHHHHH
Q psy18164 617 QALKSSAVP--MDVISQVILVGAGTRVPKVQEKITKVVGV--------ELSKNLNTDEAAALGAVYKAA 675 (1212)
Q Consensus 617 ~~L~~a~~~--~~~i~~ViLvGGssriP~Vq~~l~~~fg~--------~i~~~~n~deaVA~GAa~~aa 675 (1212)
+++..+..+ ..-...|+|+||+|.+|.+.++|...+.. .+....++..++=+||+++|.
T Consensus 285 ~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 285 TSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPERKFSTFIGGSILAS 353 (380)
T ss_pred HHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCCCCceeEEECchhhcC
Confidence 777776432 22357799999999999999999877741 233344566677788888875
|
|
| >PTZ00452 actin; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.5e-07 Score=110.99 Aligned_cols=236 Identities=14% Similarity=0.107 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHHH-HHcCCCeeeeechhHHHHHhhcccccccCCCCCCe
Q psy18164 399 LVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPV 477 (1212)
Q Consensus 399 l~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~Aa-~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~ 477 (1212)
.+..+++|+....- .....-..+++|-|.+.+..+|+.|.+.+ +..++..+.+.+.+.+++++++. .
T Consensus 81 ~~e~iw~~~f~~~l-~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~-----------~ 148 (375)
T PTZ00452 81 DIEIIWHHAFYNEL-CMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGK-----------T 148 (375)
T ss_pred HHHHHHHHHHHhhc-CCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCC-----------c
Confidence 33456666543210 11122346899999999999998886655 44588888899999999877532 3
Q ss_pred EEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHH
Q psy18164 478 HVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRA 557 (1212)
Q Consensus 478 ~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra 557 (1212)
+-||+|+|.|.|+++-|- .| +-+........+||.+++.-|.+.|..+ .. .+.. ...
T Consensus 149 tglVVDiG~~~t~v~PV~--------dG-------~~l~~~~~r~~~gG~~lt~~L~~lL~~~-----~~--~~~~-~~~ 205 (375)
T PTZ00452 149 IGLVVDSGEGVTHCVPVF--------EG-------HQIPQAITKINLAGRLCTDYLTQILQEL-----GY--SLTE-PHQ 205 (375)
T ss_pred eeeeecCCCCcceEEEEE--------CC-------EEeccceEEeeccchHHHHHHHHHHHhc-----CC--CCCC-HHH
Confidence 569999999999987664 24 2222222335799999999998887542 11 1111 110
Q ss_pred HHHHHHHHHHhhhhccCCce------------eEEEE-eecccCcceEEEEeHHHHH---HHHHHHH-----HHHHHHHH
Q psy18164 558 VAKLFKEAGRLKNVLSANNE------------HFAQI-EGLIDEIDFKLLVTRAEFE---ALNEDLF-----DRVGYPVE 616 (1212)
Q Consensus 558 ~~kL~~~aek~K~~LS~n~~------------~~i~i-e~l~~~~d~~~~itR~efe---~l~~~l~-----~~i~~~i~ 616 (1212)
. ..++.+|+.++--.. ..... -.|-|+. .+.|..+.|. -|++|-+ ..+.++|.
T Consensus 206 -~---~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~LPDg~--~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~ 279 (375)
T PTZ00452 206 -R---IIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKLPDGN--ILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAY 279 (375)
T ss_pred -H---HHHHHHHHHhccccCcHHHHHHHhhccCCcCceEECCCCC--EEEeehHHhcCcccccChhhcCCCCCChhHHHH
Confidence 1 113334444321100 00000 1122332 3567777662 2333321 24567777
Q ss_pred HHHHhcCCC--CCCccEEEEEcCCcCCHHHHHHHHHHhCC--------cccCCCCchhHHHhhHHHHHH
Q psy18164 617 QALKSSAVP--MDVISQVILVGAGTRVPKVQEKITKVVGV--------ELSKNLNTDEAAALGAVYKAA 675 (1212)
Q Consensus 617 ~~L~~a~~~--~~~i~~ViLvGGssriP~Vq~~l~~~fg~--------~i~~~~n~deaVA~GAa~~aa 675 (1212)
+++..+... ..-.+.|+|+||+|.+|.+.++|.+.+.. ++..+.+...++=+|+++.|.
T Consensus 280 ~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilas 348 (375)
T PTZ00452 280 SSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCT 348 (375)
T ss_pred HHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCceeEEecCCCcceeEEECchhhcC
Confidence 887776432 33356899999999999999999877641 223344556677788888885
|
|
| >COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.2e-08 Score=99.09 Aligned_cols=83 Identities=23% Similarity=0.240 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHHHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEE
Q psy18164 155 MLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMF 234 (1212)
Q Consensus 155 ~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV 234 (1212)
.+++++++.+++.+|..++++.-++|..--....+...+..+.||+.++.+++||+|||.-..+. .-.|
T Consensus 76 eiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~-----------dg~V 144 (277)
T COG4820 76 EIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLD-----------DGGV 144 (277)
T ss_pred HHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccC-----------CCcE
Confidence 57888999999999999999999999998777778888999999999999999999999644432 2379
Q ss_pred EecCCceEEEEEEE
Q psy18164 235 YDMGAWSTTVSIVS 248 (1212)
Q Consensus 235 ~D~GggT~Dvsvv~ 248 (1212)
+|+||||+-+|+++
T Consensus 145 VDiGGGTTGIsi~k 158 (277)
T COG4820 145 VDIGGGTTGISIVK 158 (277)
T ss_pred EEeCCCcceeEEEE
Confidence 99999999999986
|
|
| >PRK09472 ftsA cell division protein FtsA; Reviewed | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.3e-07 Score=109.84 Aligned_cols=55 Identities=24% Similarity=0.230 Sum_probs=45.7
Q ss_pred HHHHHHHHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEE
Q psy18164 188 RQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 188 r~~l~~Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~ 248 (1212)
.+.+.+|++.||+++..++.||.|+|.++..... .+..++|+||||||||++++.
T Consensus 168 ~~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~e------~~~gv~vvDiGggtTdisv~~ 222 (420)
T PRK09472 168 AKNIVKAVERCGLKVDQLIFAGLASSYAVLTEDE------RELGVCVVDIGGGTMDIAVYT 222 (420)
T ss_pred HHHHHHHHHHcCCeEeeEEehhhHHHHHhcChhh------hhcCeEEEEeCCCceEEEEEE
Confidence 3345679999999999999999999998864322 234699999999999999996
|
|
| >TIGR01174 ftsA cell division protein FtsA | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.5e-06 Score=102.76 Aligned_cols=58 Identities=19% Similarity=0.210 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEE
Q psy18164 185 QIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 185 ~~qr~~l~~Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~ 248 (1212)
....+.+.+|++.||+++..++.||.|+|++|..... ....++|+|+||||+|++++.
T Consensus 157 ~~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~~------~~~~~~vvDiG~gtt~i~i~~ 214 (371)
T TIGR01174 157 STILRNLVKCVERCGLEVDNIVLSGLASAIAVLTEDE------KELGVCLIDIGGGTTDIAVYT 214 (371)
T ss_pred HHHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcch------hcCCEEEEEeCCCcEEEEEEE
Confidence 3456788899999999999999999999998854221 234699999999999999985
|
This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70. |
| >PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA [] | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.1e-06 Score=98.96 Aligned_cols=173 Identities=14% Similarity=0.180 Sum_probs=97.6
Q ss_pred CeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChH
Q psy18164 448 KVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGL 527 (1212)
Q Consensus 448 ~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~ 527 (1212)
..+.++.|+.||.+.+..... + ...++|+|+||+|+|++++. | ..-.+-.+.+...+|-.
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~~~----~--~~~~lVVDIGG~T~Dv~~v~---------~-----~~~~~~~~~~~~~~Gvs 200 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMDLD----E--DESVLVVDIGGRTTDVAVVR---------G-----GLPDISKCSGTPEIGVS 200 (318)
T ss_dssp EEEEEEESSHHHHHHHHHTS-----T--TSEEEEEEE-SS-EEEEEEE---------G-----GG--EEEEEEETTSSTH
T ss_pred eeEEEEcccHHHHHHHHHhhc----c--cCcEEEEEcCCCeEEeeeec---------C-----CccccchhccCCchhHH
Confidence 356789999999988765421 1 46799999999999999886 1 01112334555689998
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccCcceEEEEeHHHHHHHHHHH
Q psy18164 528 EMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDL 607 (1212)
Q Consensus 528 ~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~~d~~~~itR~efe~l~~~l 607 (1212)
.+-..+.+.+...... . +.....++.+.. +-+..++. ...+.+ .++++.+.++..
T Consensus 201 ~~~~~I~~~l~~~~~~-------~--s~~~~~~ii~~~-~~~~~~~~----------~i~~~~-----~~~~v~~~i~~~ 255 (318)
T PF06406_consen 201 DLYDAIAQALRSAGID-------T--SELQIDDIIRNR-KDKGYLRQ----------VINDED-----VIDDVSEVIEEA 255 (318)
T ss_dssp HHHHHHHHHTT--SBH-------H--HHHHHHHHHHTT-T-HHHHHH----------HSSSHH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-------C--cHHHHHHHHHhh-hccceecc----------cccchh-----hHHHHHHHHHHH
Confidence 8888877776652110 0 011111111100 00011110 001111 134444555555
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhC---CcccCCCCchhHHHhhHH
Q psy18164 608 FDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG---VELSKNLNTDEAAALGAV 671 (1212)
Q Consensus 608 ~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg---~~i~~~~n~deaVA~GAa 671 (1212)
++++.+-|.+.+. ...+++.|+|+||++. .+.+.|++.|+ ..+...-||..|-|+|-+
T Consensus 256 ~~~l~~~i~~~~~----~~~~~~~I~~vGGGA~--ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 256 VEELINRILRELG----DFSDIDRIFFVGGGAI--LLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp HHHHHHHHHHHHT----TS-S-SEEEEESTTHH--HHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred HHHHHHHHHHHHh----hhccCCeEEEECCcHH--HHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 5555555555543 2347899999999975 57899999987 366778899999999954
|
They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A. |
| >cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.3e-06 Score=103.60 Aligned_cols=149 Identities=16% Similarity=0.097 Sum_probs=99.2
Q ss_pred EEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEec----------CceeEccchhhhhccCCCChHHHHHHHhC
Q psy18164 39 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK----------GERTFGEDAQIIGTRFPSNSYGYFLDLLG 108 (1212)
Q Consensus 39 vGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~----------~~~~iG~~A~~~~~~~p~~~~~~~KrllG 108 (1212)
|.||+||.++++++..++.+.-++ ||+++... ...++|.+|...... .
T Consensus 2 iViD~Gs~~~r~G~a~~~~p~~~~---------ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~-~------------ 59 (371)
T cd00012 2 VVIDNGSGTIKAGFAGEDAPRVVF---------PSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGL-G------------ 59 (371)
T ss_pred EEEECCCCeEEEEeCCCCCCceEe---------eccceeecCcccccccCCCceEEchhhhhCCCC-c------------
Confidence 689999999999998766444344 66766532 345677766432110 0
Q ss_pred CCCCCHHHHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHH
Q psy18164 109 KSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIER 188 (1212)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr 188 (1212)
..-..|+ .+|.+ .--+.+..+++++....-.. ...-..+++++|..++..+|
T Consensus 60 ----------~~~~~P~-------~~G~i----------~d~~~~e~~~~~~~~~~l~~-~~~~~~vvl~~p~~~~~~~r 111 (371)
T cd00012 60 ----------LELIYPI-------EHGIV----------VDWDDMEKIWDHLFFNELKV-NPEEHPVLLTEPPLNPKSNR 111 (371)
T ss_pred ----------eEEcccc-------cCCEE----------eCHHHHHHHHHHHHHHhcCC-CCCCCceEEecCCCCCHHHH
Confidence 0001121 12222 12245666777766542111 11235699999999998888
Q ss_pred HHHHHH-HHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEE
Q psy18164 189 QSMLKA-GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 189 ~~l~~A-a~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~ 248 (1212)
+.+.+. .+..|++.+.++++|.+|+++++. .+.+|+|+|+++++++.+.
T Consensus 112 ~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~-----------~~~lVVDiG~~~t~i~pv~ 161 (371)
T cd00012 112 EKTTEIMFETFNVPALYVAIQAVLSLYASGR-----------TTGLVVDSGDGVTHVVPVY 161 (371)
T ss_pred HHHHHHhhccCCCCEEEEechHHHHHHhcCC-----------CeEEEEECCCCeeEEEEEE
Confidence 887775 577899999999999999998764 3689999999999987765
|
Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins. |
| >smart00268 ACTIN Actin | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.8e-06 Score=100.81 Aligned_cols=148 Identities=17% Similarity=0.178 Sum_probs=102.0
Q ss_pred eEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEecC---------ceeEccchhhhhccCCCChHHHHHHHh
Q psy18164 37 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG---------ERTFGEDAQIIGTRFPSNSYGYFLDLL 107 (1212)
Q Consensus 37 ~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~~---------~~~iG~~A~~~~~~~p~~~~~~~Krll 107 (1212)
++|+||+||.++++++..+..+.-+ +||+|+.... ..++|.+|..... .
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~---------~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~~----~--------- 59 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVV---------FPSIVGRPKDGKGMVGDAKDTFVGDEAQEKRG----G--------- 59 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEE---------ccceeeEecccccccCCCcceEecchhhhcCC----C---------
Confidence 4689999999999998866544323 4888887422 2456766532110 0
Q ss_pred CCCCCCHHHHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCC--ccccEEEccCCCCCH
Q psy18164 108 GKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQ--VINEAVIIVPGYFNQ 185 (1212)
Q Consensus 108 G~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~--~~~~~VitVPa~f~~ 185 (1212)
..-..|+ .+|.+ .--+.+..+++++... .++. .-..++++.|...+.
T Consensus 60 -----------~~~~~P~-------~~G~i----------~d~~~~e~i~~~~~~~---~l~~~~~~~~vll~~p~~~~~ 108 (373)
T smart00268 60 -----------LELKYPI-------EHGIV----------ENWDDMEKIWDYTFFN---ELRVEPEEHPVLLTEPPMNPK 108 (373)
T ss_pred -----------ceecCCC-------cCCEE----------eCHHHHHHHHHHHHhh---hcCCCCccCeeEEecCCCCCH
Confidence 0011221 12222 2236677777777764 2222 224689999999999
Q ss_pred HHHHHHHHHH-HHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEE
Q psy18164 186 IERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 186 ~qr~~l~~Aa-~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~ 248 (1212)
.+|+.+.+.+ +..|++.+.++++|.+|+++++. .+.||+|+|+++++++.+.
T Consensus 109 ~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g~-----------~~~lVVDiG~~~t~v~pv~ 161 (373)
T smart00268 109 SNREKILEIMFETFNFPALYIAIQAVLSLYASGR-----------TTGLVIDSGDGVTHVVPVV 161 (373)
T ss_pred HHHHHHHHHhhccCCCCeEEEeccHHHHHHhCCC-----------CEEEEEecCCCcceEEEEE
Confidence 9999998887 57799999999999999988761 3689999999999998876
|
ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily |
| >COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.5e-05 Score=83.41 Aligned_cols=161 Identities=19% Similarity=0.262 Sum_probs=96.6
Q ss_pred HHHHHHHHHHcCCCeeeeechhHHHHHhhcccccccCCCC-CCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeE
Q psy18164 435 RQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNET-NPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQV 513 (1212)
Q Consensus 435 R~al~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~-~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~ 513 (1212)
-....+|+++|||+..-+==|.-|.-=+|... -..+... ....++++|+|+.++.+.++. .|
T Consensus 151 v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~-~~~~~~~~a~~~vav~~Igat~s~l~vi~--------~g-------- 213 (354)
T COG4972 151 VESRIDAFELAGLEPKVLDVESFALLRAYRLL-ASQFGPEEAAMKVAVFDIGATSSELLVIQ--------DG-------- 213 (354)
T ss_pred hHHHHHHHHHcCCCceEEehHHHHHHHHHHHH-HHHhCCchhhhhheeeeecccceEEEEEE--------CC--------
Confidence 44567899999999855544444444344411 1122222 134579999999999999987 23
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccCcceEE
Q psy18164 514 SVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKL 593 (1212)
Q Consensus 514 ~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~~d~~~ 593 (1212)
..-+..+..+||+.+...|...+-- + ...++.+|....--. |+..
T Consensus 214 -k~ly~r~~~~g~~Qlt~~i~r~~~L----------~-----------~~~a~~~k~~~~~P~-------------~y~~ 258 (354)
T COG4972 214 -KILYTREVPVGTDQLTQEIQRAYSL----------T-----------EEKAEEIKRGGTLPT-------------DYGS 258 (354)
T ss_pred -eeeeEeeccCcHHHHHHHHHHHhCC----------C-----------hhHhHHHHhCCCCCC-------------chhH
Confidence 1223345789999999888654321 1 112445554332111 1111
Q ss_pred EEeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhC
Q psy18164 594 LVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG 653 (1212)
Q Consensus 594 ~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg 653 (1212)
+-+.....++.++|...|+--+...+ ..+|++++|.||+.++-.+.+.|.+..+
T Consensus 259 ----~vl~~f~~~l~~ei~Rslqfy~~~s~--~~~id~i~LaGggA~l~gL~~~i~qrl~ 312 (354)
T COG4972 259 ----EVLRPFLGELTQEIRRSLQFYLSQSE--MVDIDQILLAGGGASLEGLAAAIQQRLS 312 (354)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHhccc--cceeeEEEEecCCcchhhHHHHHHHHhC
Confidence 11122333444444444444444443 5589999999999999999999999987
|
|
| >TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative | Back alignment and domain information |
|---|
Probab=98.35 E-value=9.8e-06 Score=90.23 Aligned_cols=173 Identities=14% Similarity=0.190 Sum_probs=99.8
Q ss_pred eeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHH
Q psy18164 451 QLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQ 530 (1212)
Q Consensus 451 ~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D 530 (1212)
..++|.+|-+..-....+ ..=.|+|+||..+-+.+++ . | .+.-.........|+..|.
T Consensus 73 ~~~~ei~~~~~g~~~~~~--------~~~~vidiGgqd~k~i~~~-~-------g------~~~~~~~n~~ca~Gtg~f~ 130 (248)
T TIGR00241 73 KIVTEISCHGKGANYLAP--------EARGVIDIGGQDSKVIKID-D-------G------KVDDFTMNDKCAAGTGRFL 130 (248)
T ss_pred CceEEhhHHHHHHHHHCC--------CCCEEEEecCCeeEEEEEC-C-------C------cEeeeeecCcccccccHHH
Confidence 367788877654322222 1125999999988887775 2 3 2322223444567777787
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEee-cccCcceEEEEeHHHHHHHHHHHHH
Q psy18164 531 IRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEG-LIDEIDFKLLVTRAEFEALNEDLFD 609 (1212)
Q Consensus 531 ~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~-l~~~~d~~~~itR~efe~l~~~l~~ 609 (1212)
..+++.+--.+. .+..+ +.+.+....-+....+..+. +.... .--.++ ++++..+++
T Consensus 131 e~~a~~l~~~~~--------------e~~~~---~~~~~~~~~~~~~c~vf~~s~vi~~l--~~g~~~---~di~~~~~~ 188 (248)
T TIGR00241 131 EVTARRLGVSVE--------------ELGSL---AEKADRKAKISSMCTVFAESELISLL--AAGVKK---EDILAGVYE 188 (248)
T ss_pred HHHHHHcCCCHH--------------HHHHH---HhcCCCCCCcCCEeEEEechhHHHHH--HCCCCH---HHHHHHHHH
Confidence 776655431111 11111 11111111112222222221 11100 011233 355566666
Q ss_pred HHHHHHHHHHHhcCCCCCCcc-EEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHH
Q psy18164 610 RVGYPVEQALKSSAVPMDVIS-QVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVY 672 (1212)
Q Consensus 610 ~i~~~i~~~L~~a~~~~~~i~-~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~ 672 (1212)
.+..-+.+.+...+ ++ .|+|.||.++.|.+.+.+.+.+|.++..+-++..+.|+|||+
T Consensus 189 ~va~~i~~~~~~~~-----~~~~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~~~~~~AlGaAl 247 (248)
T TIGR00241 189 SIAERVAEMLQRLK-----IEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPEPQIVGAVGAAL 247 (248)
T ss_pred HHHHHHHHHHhhcC-----CCCCEEEECccccCHHHHHHHHHHhCCcEEcCCCccHHHHHHHHh
Confidence 66666666554433 44 799999999999999999999998888889999999999997
|
This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase. |
| >COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.28 E-value=7.8e-06 Score=95.72 Aligned_cols=63 Identities=30% Similarity=0.291 Sum_probs=50.9
Q ss_pred EEccCCCCCHHHHHHHHHHHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEE
Q psy18164 176 VIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 176 VitVPa~f~~~qr~~l~~Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~ 248 (1212)
++++|..+ -+.+++|.+.+|+++..++-+|-|+|.+....... .-.++++||||||+|+++++
T Consensus 159 vit~~~~~----~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~dEk------elGv~lIDiG~GTTdIai~~ 221 (418)
T COG0849 159 VITGPKNI----LENLEKCVERAGLKVDNIVLEPLASALAVLTEDEK------ELGVALIDIGGGTTDIAIYK 221 (418)
T ss_pred EEEcchHH----HHHHHHHHHHhCCCeeeEEEehhhhhhhccCcccH------hcCeEEEEeCCCcEEEEEEE
Confidence 45555433 45689999999999999999999999877654443 34699999999999999975
|
|
| >COG5277 Actin and related proteins [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.2e-05 Score=91.00 Aligned_cols=193 Identities=13% Similarity=0.113 Sum_probs=114.4
Q ss_pred EEEecCceeEEEEEEeCCCCeEEecCCCCCcc-ceEEEE-EecCcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCHHH
Q psy18164 286 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRK-TPTLVA-FHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVV 363 (1212)
Q Consensus 286 vGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~-~PS~V~-f~~~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~~v 363 (1212)
+-||.||.+++++++.+..|.-+..+..+++. +.++.. -..+.+++|.++...... +.
T Consensus 9 iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~~-~~------------------- 68 (444)
T COG5277 9 IVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDN-SL------------------- 68 (444)
T ss_pred EEEeCCCceEEeeecCCCCceeecccccccccccccccccccccccccCchhhhccCC-cc-------------------
Confidence 78999999999999988778777777777664 444332 123445566655432100 00
Q ss_pred HhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHH-HHHcCCccceEEEecCCCCCHHHHHHHHHHH
Q psy18164 364 QLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYA-SVSAGQVINEAVIIVPGYFNQIERQSMLKAG 442 (1212)
Q Consensus 364 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a-~~~~~~~i~~~VItVP~~f~~~qR~al~~Aa 442 (1212)
.........+. +.-=+...++.+|+...- .......-..+++|-|..+....|..+.+.+
T Consensus 69 ------------------~~~~~p~~~g~-i~~W~~~e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e~~ 129 (444)
T COG5277 69 ------------------LELRYPIENGI-ILNWDAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITELL 129 (444)
T ss_pred ------------------ceeecccccCc-cCCcHHHHHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHHHH
Confidence 00111111111 111122334444444432 1111122336999999999999888766554
Q ss_pred -HHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecC
Q psy18164 443 -ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYD 521 (1212)
Q Consensus 443 -~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d 521 (1212)
+...+..+.+..++.+++++.+.. ..+-+|+|+|.+.|+++=|- .| +.+......
T Consensus 130 fE~~~vp~~~~~~~~~l~~ya~g~~---------~~~g~ViD~G~~~t~v~PV~--------DG-------~~l~~a~~r 185 (444)
T COG5277 130 FETLNVPALYLAIQAVLSLYASGSS---------DETGLVIDSGDSVTHVIPVV--------DG-------IVLPKAVKR 185 (444)
T ss_pred HHhcCCcceEeeHHHHHHHHhcCCC---------CCceEEEEcCCCceeeEeee--------cc-------cccccccee
Confidence 444666666666666666554332 13689999999999987664 24 223333334
Q ss_pred CCCChHHHHHHHHHHHHHHH
Q psy18164 522 RTLGGLEMQIRLRDFLGKKF 541 (1212)
Q Consensus 522 ~~lGG~~~D~~l~~~l~~~~ 541 (1212)
..+||++++..|.+.|....
T Consensus 186 i~~gG~~it~~l~~lL~~~~ 205 (444)
T COG5277 186 IDIGGRDITDYLKKLLREKY 205 (444)
T ss_pred eecCcHHHHHHHHHHHhhcc
Confidence 57999999999999888853
|
|
| >KOG0679|consensus | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00011 Score=82.12 Aligned_cols=116 Identities=22% Similarity=0.222 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHH-HHHcCCCeeeeechhHHHHHhhcccccccCCCCCC
Q psy18164 398 ELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA-GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNP 476 (1212)
Q Consensus 398 el~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~A-a~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~ 476 (1212)
+++.++++|..+.-- +.+-.-.-++||-|++=+++.|+.+.+. .+...+....|..+++++|++-| .
T Consensus 86 D~~~~~w~~~~~~~L-k~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~G-----------r 153 (426)
T KOG0679|consen 86 DLFEMQWRYAYKNQL-KVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANG-----------R 153 (426)
T ss_pred HHHHHHHHHHHhhhh-hcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcC-----------C
Confidence 456677777764221 1122224589999999889998877665 45567788888888888887643 2
Q ss_pred eEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHH
Q psy18164 477 VHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKK 540 (1212)
Q Consensus 477 ~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~ 540 (1212)
.+-||+|+|++++.|+=+. .| .+-..++.. ..+||+-++..+.+.|..+
T Consensus 154 stalVvDiGa~~~svsPV~--------DG------~Vlqk~vvk-s~laGdFl~~~~~q~l~~~ 202 (426)
T KOG0679|consen 154 STALVVDIGATHTSVSPVH--------DG------YVLQKGVVK-SPLAGDFLNDQCRQLLEPK 202 (426)
T ss_pred CceEEEEecCCCceeeeee--------cc------eEeeeeeEe-cccchHHHHHHHHHHHhhc
Confidence 4579999999999998765 24 232333333 5899999999999999877
|
|
| >PRK13917 plasmid segregation protein ParM; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00017 Score=84.03 Aligned_cols=74 Identities=11% Similarity=0.066 Sum_probs=48.7
Q ss_pred EEEccCCCCCHHHH-HHHHHHHHHc------------CCceEEEecchhHHHHHhhhhcccCC--CCCCCeEEEEEecCC
Q psy18164 175 AVIIVPGYFNQIER-QSMLKAGELA------------GLKVLQLMNDYTAVALNYGIFKRKDF--NETNPVHVMFYDMGA 239 (1212)
Q Consensus 175 ~VitVPa~f~~~qr-~~l~~Aa~~A------------Gl~~~~li~EP~AAal~y~~~~~~~~--~~~~~~~vlV~D~Gg 239 (1212)
+|.+.|+.+...++ ..+++..... -+..+.+++||.+|.+.+........ ..-....++|+|+|+
T Consensus 115 l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~ 194 (344)
T PRK13917 115 VATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGS 194 (344)
T ss_pred EEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCC
Confidence 44699998854443 5666655321 12356789999999887765432110 011234789999999
Q ss_pred ceEEEEEEE
Q psy18164 240 WSTTVSIVS 248 (1212)
Q Consensus 240 gT~Dvsvv~ 248 (1212)
||+|++++.
T Consensus 195 ~TtD~~v~~ 203 (344)
T PRK13917 195 GTTDLDTIQ 203 (344)
T ss_pred CcEEEEEEe
Confidence 999999985
|
|
| >TIGR03739 PRTRC_D PRTRC system protein D | Back alignment and domain information |
|---|
Probab=97.81 E-value=7.1e-05 Score=86.64 Aligned_cols=76 Identities=11% Similarity=0.065 Sum_probs=57.3
Q ss_pred ccccEEEccCCCCCHHHHHHHHHHHHHc---------CCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCce
Q psy18164 171 VINEAVIIVPGYFNQIERQSMLKAGELA---------GLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWS 241 (1212)
Q Consensus 171 ~~~~~VitVPa~f~~~qr~~l~~Aa~~A---------Gl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT 241 (1212)
.+..+|++.|..+...+|..+++..... -+..+.+++||.+|.+.+...+..... ....++|+|+||+|
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~--~~~~~lVIDIG~~T 178 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLT--GKEQSLIIDPGYFT 178 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCccc--CcCcEEEEecCCCe
Confidence 3557999999999988999998887531 335678899999998877653321111 34578999999999
Q ss_pred EEEEEEE
Q psy18164 242 TTVSIVS 248 (1212)
Q Consensus 242 ~Dvsvv~ 248 (1212)
+|+.++.
T Consensus 179 tD~~~~~ 185 (320)
T TIGR03739 179 FDWLVAR 185 (320)
T ss_pred eeeehcc
Confidence 9998773
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region. |
| >PTZ00280 Actin-related protein 3; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00048 Score=82.75 Aligned_cols=96 Identities=13% Similarity=-0.035 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHHH-HHcCCceEEEecchhHHHHHhhhhcccCCCCCCC
Q psy18164 151 ELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNP 229 (1212)
Q Consensus 151 ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~Aa-~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~ 229 (1212)
+.+..+++|+....- .....-..+++|.|..++..+|+.+.+.+ +..|++.+.+..+|.+|++++....... .....
T Consensus 82 d~~e~l~~~~~~~~L-~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~-~~~g~ 159 (414)
T PTZ00280 82 DLMEKFWEQCIFKYL-RCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAK-ELGGT 159 (414)
T ss_pred HHHHHHHHHHHHHhh-ccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhccccccc-ccCCc
Confidence 566667776543211 11111235899999999999999988877 5559999999999999998763321110 00012
Q ss_pred eEEEEEecCCceEEEEEEE
Q psy18164 230 VHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 230 ~~vlV~D~GggT~Dvsvv~ 248 (1212)
.+-||+|+|+|+++++.|-
T Consensus 160 ~tglVVDiG~~~T~i~PV~ 178 (414)
T PTZ00280 160 LTGTVIDSGDGVTHVIPVV 178 (414)
T ss_pred eeEEEEECCCCceEEEEEE
Confidence 3569999999999987664
|
|
| >PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.002 Score=81.40 Aligned_cols=273 Identities=16% Similarity=0.174 Sum_probs=154.2
Q ss_pred eeeeHHHHHHHHHHHHHHHHHHHcC--------------CccceEEEecCCCCCHHHHHHHHHHHHHc--------CCC-
Q psy18164 392 ELYHVEELVAMLLHKAREYASVSAG--------------QVINEAVIIVPGYFNQIERQSMLKAGELA--------GLK- 448 (1212)
Q Consensus 392 ~~~~~eel~a~~L~~lk~~a~~~~~--------------~~i~~~VItVP~~f~~~qR~al~~Aa~~A--------Gl~- 448 (1212)
-.||=..++.++|..+.-.|--+.+ ...+.+++|||+.....+|+.+++.++.| |..
T Consensus 415 p~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~lGw~~ 494 (1002)
T PF07520_consen 415 PHYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKALGWHP 494 (1002)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3566677777777777777655543 23567999999999999999988887765 421
Q ss_pred --------------------eeeeechhHHHHHhhc------------------ccccccC-----CCCCCeEEEEEEcC
Q psy18164 449 --------------------VLQLMNDYTAVALNYG------------------IFKRKDF-----NETNPVHVMFYDMG 485 (1212)
Q Consensus 449 --------------------~~~li~EptAaAl~y~------------------~~~~~~~-----~~~~~~~vlv~D~G 485 (1212)
+.-=-+|.|+.=+=|. +.+.... .....-+|.-+|+|
T Consensus 495 ~~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriASIDIG 574 (1002)
T PF07520_consen 495 WDDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIASIDIG 574 (1002)
T ss_pred CCCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceEEEEEecC
Confidence 0001233333322111 1111110 11124579999999
Q ss_pred CCceeEEEEEEEeeecccCCccccCCeEEEE----EEecCCCCChHHHHHHH-HHHHHHHHhhccc-C------------
Q psy18164 486 AWSTTVSIVSYQVVKTKERGFVETHPQVSVL----GVGYDRTLGGLEMQIRL-RDFLGKKFNEMKK-T------------ 547 (1212)
Q Consensus 486 ggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl----~~~~d~~lGG~~~D~~l-~~~l~~~~~~~~~-~------------ 547 (1212)
|||||..|-.|.... |. .....+. -..| -.+.|+||=..+ ..++...+...-+ .
T Consensus 575 GGTTDL~It~Y~ld~----G~---g~nv~I~P~q~FReG-FkvAGDDiLldVI~~~VlPal~~aL~~aG~~~~~~ll~~L 646 (1002)
T PF07520_consen 575 GGTTDLMITQYRLDD----GQ---GSNVKITPEQLFREG-FKVAGDDILLDVIQRIVLPALQQALKKAGVADPRALLSRL 646 (1002)
T ss_pred CCcceeeEEEEEecc----CC---cceeEECcchhhhhh-cccccHHHHHHHHHHHhHHHHHHHHHHhcccCHHHHHHHH
Confidence 999999999987332 20 1112221 1122 457888885544 4555555443110 0
Q ss_pred -CCCCCCCH-H-------------HHHHHHHHHHHhhhhccCCceeEEEEeec---------------------------
Q psy18164 548 -TKDVFENP-R-------------AVAKLFKEAGRLKNVLSANNEHFAQIEGL--------------------------- 585 (1212)
Q Consensus 548 -~~d~~~~~-r-------------a~~kL~~~aek~K~~LS~n~~~~i~ie~l--------------------------- 585 (1212)
+.+-.... + ...+++.++|..=.. +........+..+
T Consensus 647 fG~dg~~~~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~~-~~~~~~~~~f~ell~~~~Pt~~vl~yi~~~~~~~~~~~~~ 725 (1002)
T PF07520_consen 647 FGGDGQSDQDRVLRQQFTLQVFIPIGLAILKAYENYDPL-DPSAEIDATFGELLEREPPTAAVLDYINEEVRRLPAGAPD 725 (1002)
T ss_pred hCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-ccCccccccHHHhcCCcCCcHHHHHHHHHHHhhcCCCCCC
Confidence 11100000 0 123455555553221 1111111111111
Q ss_pred ccCcceEEEEeHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcc------
Q psy18164 586 IDEIDFKLLVTRAEFEALNE---DLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVEL------ 656 (1212)
Q Consensus 586 ~~~~d~~~~itR~efe~l~~---~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i------ 656 (1212)
++=.|+.+.|+..++...+- -.+..+..-+-+++.. -+-|-++|.|--||+|.||.++++.....+
T Consensus 726 Fdildv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~-----Y~CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l 800 (1002)
T PF07520_consen 726 FDILDVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHH-----YDCDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPL 800 (1002)
T ss_pred cceecceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHH-----hCCCEEEEcCCccccHHHHHHHHHhCCCCcccEEec
Confidence 12245568899999988664 3444444444444443 246789999999999999999999975322
Q ss_pred --------------cCCCCchhHHHhhHHHHHHhhc
Q psy18164 657 --------------SKNLNTDEAAALGAVYKAADLS 678 (1212)
Q Consensus 657 --------------~~~~n~deaVA~GAa~~aa~ls 678 (1212)
.+--||-..||.||.+.+....
T Consensus 801 ~~Y~tg~WYPF~~~~rI~dPKTTaaVGAmLc~La~~ 836 (1002)
T PF07520_consen 801 HGYRTGNWYPFNDQGRIDDPKTTAAVGAMLCLLAEG 836 (1002)
T ss_pred CCeeecccccCCCCCcCCCchHHHHHHHHHHHHhcc
Confidence 2345899999999998877655
|
It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity []. |
| >PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00028 Score=82.57 Aligned_cols=86 Identities=12% Similarity=0.121 Sum_probs=54.8
Q ss_pred ceEEEecCCCCCHHHHHHHHHHHH--------HcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeE
Q psy18164 420 NEAVIIVPGYFNQIERQSMLKAGE--------LAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTV 491 (1212)
Q Consensus 420 ~~~VItVP~~f~~~qR~al~~Aa~--------~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dv 491 (1212)
.-.+||.+...-++-++.+..+.. .||+++-.++. |-|++.+... .. + ...++++|||||||++
T Consensus 89 ~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLs-eE-----k-e~gVa~IDIGgGTT~i 160 (475)
T PRK10719 89 GAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLS-EE-----R-NTRVLNIDIGGGTANY 160 (475)
T ss_pred cEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhh-hh-----c-cCceEEEEeCCCceEE
Confidence 346788877644444443333211 26777666666 8777765542 21 2 6789999999999999
Q ss_pred EEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHH
Q psy18164 492 SIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQ 530 (1212)
Q Consensus 492 svv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D 530 (1212)
+++. .| . +.+.....+||+.+.
T Consensus 161 aVf~--------~G------~---l~~T~~l~vGG~~IT 182 (475)
T PRK10719 161 ALFD--------AG------K---VIDTACLNVGGRLIE 182 (475)
T ss_pred EEEE--------CC------E---EEEEEEEecccceEE
Confidence 9997 24 2 233334678998874
|
|
| >TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0068 Score=67.81 Aligned_cols=47 Identities=21% Similarity=0.415 Sum_probs=41.9
Q ss_pred cEEEEEcCCcCCHHHHHHHHHHhCCccc-CCCCchhHHHhhHHHHHHh
Q psy18164 630 SQVILVGAGTRVPKVQEKITKVVGVELS-KNLNTDEAAALGAVYKAAD 676 (1212)
Q Consensus 630 ~~ViLvGGssriP~Vq~~l~~~fg~~i~-~~~n~deaVA~GAa~~aa~ 676 (1212)
..|+|.||.++.|.+.+.+++.+|.++. .+.+|..+-|+|||++|..
T Consensus 241 ~~v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 241 EGFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred CCEEEECcccccHHHHHHHHHHhCCCceeCCCCccHHHHHHHHHHHHH
Confidence 3589999999999999999999997766 5778999999999999964
|
Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene. |
| >KOG0676|consensus | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00075 Score=77.69 Aligned_cols=192 Identities=15% Similarity=0.136 Sum_probs=100.8
Q ss_pred ceEEEecCCCCCHHHHHHHHHHHHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCce-eEEEEEEEe
Q psy18164 420 NEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWST-TVSIVSYQV 498 (1212)
Q Consensus 420 ~~~VItVP~~f~~~qR~al~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~-dvsvv~~~~ 498 (1212)
.-+++|-|+.+..+-|+.+-+..-. -|++-.+.=..-|.. |+..+ .+=+|+|+|.|-+ .+-|++
T Consensus 100 ~pvllte~pl~p~~nREk~tqi~FE-~fnvpa~yva~qavl--ya~g~---------ttG~VvD~G~gvt~~vPI~e--- 164 (372)
T KOG0676|consen 100 HPVLLTEPPLNPKANREKLTQIMFE-TFNVPALYVAIQAVL--YASGR---------TTGLVVDSGDGVTHVVPIYE--- 164 (372)
T ss_pred CceEeecCCCCchHhHHHHHHHhhh-hcCccHhHHHHHHHH--HHcCC---------eeEEEEEcCCCceeeeeccc---
Confidence 4689999999999999887764322 234433332223323 54432 3469999999966 444554
Q ss_pred eecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCC-CHHHHHHHHHHHHHhhhhccC---
Q psy18164 499 VKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFE-NPRAVAKLFKEAGRLKNVLSA--- 574 (1212)
Q Consensus 499 ~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~-~~ra~~kL~~~aek~K~~LS~--- 574 (1212)
| +.+........+||+++..-|...|.+. .. .... ..+ .-++.+|+.|+.
T Consensus 165 ------G-------~~lp~ai~~ldl~G~dlt~~l~~~L~~~-----g~--s~~~~~~~------eIv~diKeklCyval 218 (372)
T KOG0676|consen 165 ------G-------YALPHAILRLDLAGRDLTDYLLKQLRKR-----GY--SFTTSAEF------EIVRDIKEKLCYVAL 218 (372)
T ss_pred ------c-------cccchhhheecccchhhHHHHHHHHHhc-----cc--ccccccHH------HHHHHhHhhhccccc
Confidence 4 3344445567899999998777666651 11 1111 111 112333333321
Q ss_pred ---------CceeEEEEeecccCcceEEEEeHHHHH---HHHHHH-----HHHHHHHHHHHHHhc--CCCCCCccEEEEE
Q psy18164 575 ---------NNEHFAQIEGLIDEIDFKLLVTRAEFE---ALNEDL-----FDRVGYPVEQALKSS--AVPMDVISQVILV 635 (1212)
Q Consensus 575 ---------n~~~~i~ie~l~~~~d~~~~itR~efe---~l~~~l-----~~~i~~~i~~~L~~a--~~~~~~i~~ViLv 635 (1212)
+....+....-..|... +.+.-+.|. -+++|- ...+-..+-+.+.++ ++...-...|+|+
T Consensus 219 d~~~e~~~~~~~~~l~~~y~lPDg~~-i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLs 297 (372)
T KOG0676|consen 219 DFEEEEETANTSSSLESSYELPDGQK-ITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVLS 297 (372)
T ss_pred ccchhhhcccccccccccccCCCCCE-EecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEEe
Confidence 11111111100112222 444444332 223321 122233333333333 3333445679999
Q ss_pred cCCcCCHHHHHHHHHHhC
Q psy18164 636 GAGTRVPKVQEKITKVVG 653 (1212)
Q Consensus 636 GGssriP~Vq~~l~~~fg 653 (1212)
||+|-+|.+-+++.+-..
T Consensus 298 GGtT~~pGl~~Rl~kEl~ 315 (372)
T KOG0676|consen 298 GGTTMFPGLADRLQKELQ 315 (372)
T ss_pred CCcccchhHHHHHHHHHh
Confidence 999999999998887654
|
|
| >PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.001 Score=79.61 Aligned_cols=150 Identities=13% Similarity=0.153 Sum_probs=91.5
Q ss_pred ceEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEecC-----ceeEccchhhhhccCCCChHHHHHHHhCCC
Q psy18164 36 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG-----ERTFGEDAQIIGTRFPSNSYGYFLDLLGKS 110 (1212)
Q Consensus 36 ~~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~~-----~~~iG~~A~~~~~~~p~~~~~~~KrllG~~ 110 (1212)
..+|-||+|+.++++++..+..|-.+ +||++..... ...+|..+... .+
T Consensus 4 ~~~vViD~Gs~~~k~G~age~~P~~v---------~ps~~~~~~~~~~~~~~~~g~~~~~~---~~-------------- 57 (393)
T PF00022_consen 4 NKPVVIDNGSSTIKAGFAGEDLPRVV---------IPSVVGRPRDKNSSNDYYVGDEALSP---RS-------------- 57 (393)
T ss_dssp SSEEEEEECSSEEEEEETTSSS-SEE---------EESEEEEESSSSSSSSCEETHHHHHT---GT--------------
T ss_pred CCEEEEECCCceEEEEECCCCCCCCc---------CCCccccccccccceeEEeecccccc---hh--------------
Confidence 56789999999999999755433223 5888876432 34566552210 00
Q ss_pred CCCHHHHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHH
Q psy18164 111 IDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQS 190 (1212)
Q Consensus 111 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~ 190 (1212)
...+.. ....|.... -+.+..+++++.... -.....-..++++.|..++..+|+.
T Consensus 58 --------------~~~~~~---------p~~~g~i~~-~~~~e~i~~~~~~~~-l~~~~~~~~vll~~~~~~~~~~r~~ 112 (393)
T PF00022_consen 58 --------------NLELRS---------PIENGVIVD-WDALEEIWDYIFSNL-LKVDPSDHPVLLTEPPFNPRSQREK 112 (393)
T ss_dssp --------------GEEEEE---------SEETTEESS-HHHHHHHHHHHHHTT-T-SSGGGSEEEEEESTT--HHHHHH
T ss_pred --------------heeeee---------ecccccccc-ccccccccccccccc-cccccccceeeeeccccCCchhhhh
Confidence 000000 001121122 245566666665542 1111223469999999999999998
Q ss_pred HHHHH-HHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEE
Q psy18164 191 MLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIV 247 (1212)
Q Consensus 191 l~~Aa-~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv 247 (1212)
+.+.+ +..|++.+.++++|.+|+++++.. +-||+|+|++.+.|+-|
T Consensus 113 l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~-----------tglVVD~G~~~t~v~pV 159 (393)
T PF00022_consen 113 LAEILFEKFGVPSVYFIPSPLLALYASGRT-----------TGLVVDIGYSSTSVVPV 159 (393)
T ss_dssp HHHHHHHTS--SEEEEEEHHHHHHHHTTBS-----------SEEEEEESSS-EEEEEE
T ss_pred hhhhhhcccccceeeeeecccccccccccc-----------cccccccceeeeeeeee
Confidence 77776 577999999999999999887642 45999999999987655
|
These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B .... |
| >PTZ00004 actin-2; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.002 Score=76.46 Aligned_cols=83 Identities=8% Similarity=0.016 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHhcC--CccccEEEccCCCCCHHHHHHHHHHH-HHcCCceEEEecchhHHHHHhhhhcccCCCCC
Q psy18164 151 ELVAMLLHKAREYASVSAG--QVINEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNET 227 (1212)
Q Consensus 151 ev~~~~L~~l~~~a~~~~~--~~~~~~VitVPa~f~~~qr~~l~~Aa-~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~ 227 (1212)
+.+..++.|+.. ..++ ..-..+++|-|..++..+|+.+.+.+ +..|++.+.++.+|.+|+++++.
T Consensus 81 d~~e~i~~~~~~---~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~--------- 148 (378)
T PTZ00004 81 DDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGR--------- 148 (378)
T ss_pred HHHHHHHHHHHH---hhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCC---------
Confidence 456666766432 1222 22345789999999999998777766 67799999999999999987652
Q ss_pred CCeEEEEEecCCceEEEEEE
Q psy18164 228 NPVHVMFYDMGAWSTTVSIV 247 (1212)
Q Consensus 228 ~~~~vlV~D~GggT~Dvsvv 247 (1212)
.+-+|+|+|++.++++-+
T Consensus 149 --~tglVVDiG~~~t~v~pV 166 (378)
T PTZ00004 149 --TTGIVLDSGDGVSHTVPI 166 (378)
T ss_pred --ceEEEEECCCCcEEEEEE
Confidence 256999999999988655
|
|
| >TIGR03286 methan_mark_15 putative methanogenesis marker protein 15 | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0087 Score=69.53 Aligned_cols=46 Identities=24% Similarity=0.363 Sum_probs=43.3
Q ss_pred cEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHH
Q psy18164 630 SQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAA 675 (1212)
Q Consensus 630 ~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa 675 (1212)
+.|+++||.++.+.+.+.+++.+|.++..+.+|..+-|+|||++|.
T Consensus 357 ~~VvftGGva~N~gvv~ale~~Lg~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 357 EPVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred CcEEEECChhhhHHHHHHHHHHhCCcEEECCcccHHHHHHHHHHhc
Confidence 3599999999999999999999999999999999999999999985
|
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase. |
| >PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0015 Score=76.58 Aligned_cols=64 Identities=9% Similarity=0.036 Sum_probs=43.6
Q ss_pred cEEEccCCCCCHHHHHHHHHHHHH------------cCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCce
Q psy18164 174 EAVIIVPGYFNQIERQSMLKAGEL------------AGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWS 241 (1212)
Q Consensus 174 ~~VitVPa~f~~~qr~~l~~Aa~~------------AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT 241 (1212)
-.+||.+... ++.++++++. ||++...++. |-|++.+.... . ....++++|+||||
T Consensus 90 ahIITg~~~~----~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLse-E------ke~gVa~IDIGgGT 157 (475)
T PRK10719 90 AVIITGETAR----KENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSE-E------RNTRVLNIDIGGGT 157 (475)
T ss_pred EEEEEechhH----HHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhh-h------ccCceEEEEeCCCc
Confidence 4577777644 4445566665 6666555555 88888755532 1 23479999999999
Q ss_pred EEEEEEEE
Q psy18164 242 TTVSIVSY 249 (1212)
Q Consensus 242 ~Dvsvv~~ 249 (1212)
++++++.=
T Consensus 158 T~iaVf~~ 165 (475)
T PRK10719 158 ANYALFDA 165 (475)
T ss_pred eEEEEEEC
Confidence 99999763
|
|
| >COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.028 Score=63.88 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=43.3
Q ss_pred EEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHh
Q psy18164 632 VILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAAD 676 (1212)
Q Consensus 632 ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ 676 (1212)
|+|+||.+..-.|.+.+.+.+|.++..+.+|.-.-|.|||+.|..
T Consensus 346 iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 346 IVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred EEEECcchhhHHHHHHHHHHhCCeeecCCccchhhHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999864
|
|
| >PRK13317 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.019 Score=64.65 Aligned_cols=48 Identities=25% Similarity=0.248 Sum_probs=42.5
Q ss_pred CccEEEEEc-CCcCCHHHHHHHHHHh---CCcccCCCCchhHHHhhHHHHHH
Q psy18164 628 VISQVILVG-AGTRVPKVQEKITKVV---GVELSKNLNTDEAAALGAVYKAA 675 (1212)
Q Consensus 628 ~i~~ViLvG-GssriP~Vq~~l~~~f---g~~i~~~~n~deaVA~GAa~~aa 675 (1212)
.+..|+++| |.++.|.+++.+.+++ +.++..+.|+..+.|+|||++|.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 456899999 7999999999999988 46788889999999999999875
|
|
| >PTZ00452 actin; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0044 Score=73.35 Aligned_cols=85 Identities=14% Similarity=0.060 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHHH-HHcCCceEEEecchhHHHHHhhhhcccCCCCCCC
Q psy18164 151 ELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNP 229 (1212)
Q Consensus 151 ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~Aa-~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~ 229 (1212)
+.+..++.|+....- .....-..+++|-|...+..+|+.|.+.+ +..+++.+.+.+.|.+++++++.
T Consensus 80 d~~e~iw~~~f~~~l-~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~----------- 147 (375)
T PTZ00452 80 DDIEIIWHHAFYNEL-CMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGK----------- 147 (375)
T ss_pred HHHHHHHHHHHHhhc-CCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCC-----------
Confidence 445556666543211 11222346899999999999999887777 66799999999999999987652
Q ss_pred eEEEEEecCCceEEEEEE
Q psy18164 230 VHVMFYDMGAWSTTVSIV 247 (1212)
Q Consensus 230 ~~vlV~D~GggT~Dvsvv 247 (1212)
.+-||+|+|.|.++++-|
T Consensus 148 ~tglVVDiG~~~t~v~PV 165 (375)
T PTZ00452 148 TIGLVVDSGEGVTHCVPV 165 (375)
T ss_pred ceeeeecCCCCcceEEEE
Confidence 256999999999988544
|
|
| >PTZ00281 actin; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0037 Score=74.08 Aligned_cols=81 Identities=9% Similarity=-0.007 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHhcCC--ccccEEEccCCCCCHHHHHHHHHHH-HHcCCceEEEecchhHHHHHhhhhcccCCCCC
Q psy18164 151 ELVAMLLHKAREYASVSAGQ--VINEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNET 227 (1212)
Q Consensus 151 ev~~~~L~~l~~~a~~~~~~--~~~~~VitVPa~f~~~qr~~l~~Aa-~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~ 227 (1212)
+.+..+++|+... .+.. .-..+++|-|..++..+|+.|.+.+ +..+++.+.++..|.+++++++.
T Consensus 81 d~~e~l~~~~f~~---~l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~--------- 148 (376)
T PTZ00281 81 DDMEKIWHHTFYN---ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR--------- 148 (376)
T ss_pred HHHHHHHHHHHHh---hccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCC---------
Confidence 4555566665432 2222 2246888999999999999988865 77799999999999999987652
Q ss_pred CCeEEEEEecCCceEEEE
Q psy18164 228 NPVHVMFYDMGAWSTTVS 245 (1212)
Q Consensus 228 ~~~~vlV~D~GggT~Dvs 245 (1212)
.+-||+|+|.+.+.++
T Consensus 149 --~tglVVDiG~~~t~v~ 164 (376)
T PTZ00281 149 --TTGIVMDSGDGVSHTV 164 (376)
T ss_pred --ceEEEEECCCceEEEE
Confidence 2569999999999875
|
|
| >KOG0679|consensus | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0045 Score=69.64 Aligned_cols=85 Identities=20% Similarity=0.214 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHHH-HHcCCceEEEecchhHHHHHhhhhcccCCCCCCC
Q psy18164 151 ELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNP 229 (1212)
Q Consensus 151 ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~Aa-~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~ 229 (1212)
|+..+.++|..+..- .....---++||-|++=+...|+.+.+.+ +...++...|+.+|+++|++-+.
T Consensus 86 D~~~~~w~~~~~~~L-k~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~Gr----------- 153 (426)
T KOG0679|consen 86 DLFEMQWRYAYKNQL-KVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANGR----------- 153 (426)
T ss_pred HHHHHHHHHHHhhhh-hcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcCC-----------
Confidence 566666666653211 11122235899999988888888766655 77788899999999999987653
Q ss_pred eEEEEEecCCceEEEEEE
Q psy18164 230 VHVMFYDMGAWSTTVSIV 247 (1212)
Q Consensus 230 ~~vlV~D~GggT~Dvsvv 247 (1212)
.+.||+|+|++++.|+-|
T Consensus 154 stalVvDiGa~~~svsPV 171 (426)
T KOG0679|consen 154 STALVVDIGATHTSVSPV 171 (426)
T ss_pred CceEEEEecCCCceeeee
Confidence 267999999999987754
|
|
| >PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.004 Score=67.34 Aligned_cols=189 Identities=19% Similarity=0.145 Sum_probs=95.9
Q ss_pred HHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCC
Q psy18164 443 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 522 (1212)
Q Consensus 443 ~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~ 522 (1212)
+..|.++.-.=-|+.+|.+......- .+..+.++||||||||++++.- .+.+.-+.-+|
T Consensus 106 ~~lgv~V~igGvEAemAi~GALTTPG------t~~PlaIlDmG~GSTDAsii~~-------------~g~v~~iHlAG-- 164 (332)
T PF08841_consen 106 EELGVPVEIGGVEAEMAILGALTTPG------TDKPLAILDMGGGSTDASIINR-------------DGEVTAIHLAG-- 164 (332)
T ss_dssp HHHTSEEEEECEHHHHHHHHHTTSTT--------SSEEEEEE-SSEEEEEEE-T-------------TS-EEEEEEE---
T ss_pred HHHCCceEEccccHHHHHhcccCCCC------CCCCeEEEecCCCcccHHHhCC-------------CCcEEEEEecC--
Confidence 34588776666788888876533221 1577999999999999999973 23555555444
Q ss_pred CCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeE---------EE-Eee--------
Q psy18164 523 TLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHF---------AQ-IEG-------- 584 (1212)
Q Consensus 523 ~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~---------i~-ie~-------- 584 (1212)
.|+-++..|...| +. ++ +.-||.+|+---+.-+.. +. ++.
T Consensus 165 --AG~mVTmlI~sEL----------Gl----~d------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~fa 222 (332)
T PF08841_consen 165 --AGNMVTMLINSEL----------GL----ED------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFA 222 (332)
T ss_dssp --SHHHHHHHHHHHC----------T-----S-------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTT
T ss_pred --CchhhHHHHHHhh----------CC----CC------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHee
Confidence 2555555443221 10 01 122555555311111100 00 000
Q ss_pred ---cccCcceEEEE----eHHHHHHHHHHHHHHH-HHHHHHHHHhc--CCCCCCccEEEEEcCCcCCHHHHHHHHHHhC-
Q psy18164 585 ---LIDEIDFKLLV----TRAEFEALNEDLFDRV-GYPVEQALKSS--AVPMDVISQVILVGAGTRVPKVQEKITKVVG- 653 (1212)
Q Consensus 585 ---l~~~~d~~~~i----tR~efe~l~~~l~~~i-~~~i~~~L~~a--~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg- 653 (1212)
+.. .+--+.| +-++...+=...-+++ ..-..++|+.- .-+..+|+.|+|||||+-=.-|-++|.+.+.
T Consensus 223 Rvvi~~-~~~lvPi~~~~~lEkir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~ 301 (332)
T PF08841_consen 223 RVVILK-EDGLVPIPGDLSLEKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSH 301 (332)
T ss_dssp SEEEEC-TTEEEEESSTS-HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCT
T ss_pred EEEEec-CCceeecCCCccHHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhh
Confidence 000 0111222 2233322222221221 11223444432 2345689999999999998888888887763
Q ss_pred -------CcccCCCCchhHHHhhHHHHHH
Q psy18164 654 -------VELSKNLNTDEAAALGAVYKAA 675 (1212)
Q Consensus 654 -------~~i~~~~n~deaVA~GAa~~aa 675 (1212)
-++.-..-|..|||.|.++.-+
T Consensus 302 y~iVaGRgNIrG~eGPRNAVATGLvlsy~ 330 (332)
T PF08841_consen 302 YGIVAGRGNIRGVEGPRNAVATGLVLSYA 330 (332)
T ss_dssp TT-EEEE--GGGTSTTSTHHHHHHHHHHH
T ss_pred CcceeeccccccccCchHHHHHHHHHhhc
Confidence 2566677889999999987543
|
This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C. |
| >PTZ00466 actin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0057 Score=72.49 Aligned_cols=84 Identities=7% Similarity=-0.025 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHHH-HHcCCceEEEecchhHHHHHhhhhcccCCCCCCC
Q psy18164 151 ELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNP 229 (1212)
Q Consensus 151 ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~Aa-~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~ 229 (1212)
+.+..+++|+.+... ....-..+++|-|..++..+|+.+.+.+ +..|++.+.+...|.+|+++++.
T Consensus 87 d~~e~iw~~~f~~l~--v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~----------- 153 (380)
T PTZ00466 87 NDMENIWIHVYNSMK--INSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGK----------- 153 (380)
T ss_pred HHHHHHHHHHHhhcc--cCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCC-----------
Confidence 455566666543211 1112346888999999999999987766 66799999999999999987652
Q ss_pred eEEEEEecCCceEEEEEE
Q psy18164 230 VHVMFYDMGAWSTTVSIV 247 (1212)
Q Consensus 230 ~~vlV~D~GggT~Dvsvv 247 (1212)
.+-+|+|+|.+.+.|.-+
T Consensus 154 ~tglVVD~G~~~t~v~PV 171 (380)
T PTZ00466 154 TNGTVLDCGDGVCHCVSI 171 (380)
T ss_pred ceEEEEeCCCCceEEEEE
Confidence 257999999999988543
|
|
| >PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA [] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0019 Score=74.62 Aligned_cols=42 Identities=17% Similarity=0.240 Sum_probs=31.2
Q ss_pred ceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEE
Q psy18164 201 KVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 201 ~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~ 248 (1212)
..+.+++|+.||.+.+...-. +...+||+|+||+|+|+++++
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~~~------~~~~~lVVDIGG~T~Dv~~v~ 182 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMDLD------EDESVLVVDIGGRTTDVAVVR 182 (318)
T ss_dssp EEEEEEESSHHHHHHHHHTS-------TTSEEEEEEE-SS-EEEEEEE
T ss_pred eeEEEEcccHHHHHHHHHhhc------ccCcEEEEEcCCCeEEeeeec
Confidence 467889999999988765411 124799999999999999885
|
They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A. |
| >COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.13 Score=61.55 Aligned_cols=87 Identities=17% Similarity=0.150 Sum_probs=53.8
Q ss_pred ceEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCc--------------
Q psy18164 590 DFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVE-------------- 655 (1212)
Q Consensus 590 d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~-------------- 655 (1212)
|+.+.|.-.++++.+-.---.+......+.+. ++.-+-|-++|+|--+|.|.||..++......
T Consensus 742 d~pl~i~~~ql~e~~ls~~~~i~~~f~al~Ea--In~y~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yrvg~ 819 (1014)
T COG4457 742 DVPLAIDLSQLHECFLSGDYDITGVFDALCEA--INHYDCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYRVGT 819 (1014)
T ss_pred ccceeccHHHHHHHHhhCcccccchHHHHHHH--HhhhcccEEEEcCCcccCccHHHHHhhcCCCCCCceEeccceeccc
Confidence 34456666666654322100122222222221 12345678999999999999999998876422
Q ss_pred ------ccCCCCchhHHHhhHHHHHHhhc
Q psy18164 656 ------LSKNLNTDEAAALGAVYKAADLS 678 (1212)
Q Consensus 656 ------i~~~~n~deaVA~GAa~~aa~ls 678 (1212)
..+--||-..+|.||-+.+..+.
T Consensus 820 WYPF~k~grIddPKtTAaVGAMLC~Lsl~ 848 (1014)
T COG4457 820 WYPFRKQGRIDDPKTTAAVGAMLCALSLE 848 (1014)
T ss_pred eecccccCcCCCcchHHHHHHHHHHHHhh
Confidence 12335788999999988887654
|
|
| >KOG0797|consensus | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.011 Score=68.59 Aligned_cols=122 Identities=17% Similarity=0.190 Sum_probs=88.5
Q ss_pred eeeeHHHHHHHHHHHHHHHHHHHcCCccc-----eEEEecCCCCCHHHHHHHH-HHHHHcCCCeeeeechhHHHHHhhcc
Q psy18164 392 ELYHVEELVAMLLHKAREYASVSAGQVIN-----EAVIIVPGYFNQIERQSML-KAGELAGLKVLQLMNDYTAVALNYGI 465 (1212)
Q Consensus 392 ~~~~~eel~a~~L~~lk~~a~~~~~~~i~-----~~VItVP~~f~~~qR~al~-~Aa~~AGl~~~~li~EptAaAl~y~~ 465 (1212)
..+|..++++.+-+-+.-...+.+..+.+ .+|+-||-.|....-+.+. --....||+-..++-|..||.+..|+
T Consensus 195 ~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGl 274 (618)
T KOG0797|consen 195 PYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGL 274 (618)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCc
Confidence 46788888877655554444556665544 5899999999877755444 44566799999999999999876655
Q ss_pred cccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHH
Q psy18164 466 FKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGK 539 (1212)
Q Consensus 466 ~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~ 539 (1212)
. .-.|||||+-.|.++.|+ .|.+-.+..+ -...||.||++.++-++.+
T Consensus 275 s-----------s~CVVdiGAQkTsIaCVE--------dGvs~~ntri-------~L~YGGdDitr~f~~ll~r 322 (618)
T KOG0797|consen 275 S-----------SACVVDIGAQKTSIACVE--------DGVSLPNTRI-------ILPYGGDDITRCFLWLLRR 322 (618)
T ss_pred c-----------ceeEEEccCcceeEEEee--------cCccccCceE-------EeccCCchHHHHHHHHHHh
Confidence 3 358999999999999998 3533223333 2468999999998876655
|
|
| >COG1069 AraB Ribulose kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.37 Score=57.62 Aligned_cols=224 Identities=15% Similarity=0.089 Sum_probs=119.9
Q ss_pred HHHHHHHHHcCCCeee----eechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCC
Q psy18164 436 QSMLKAGELAGLKVLQ----LMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHP 511 (1212)
Q Consensus 436 ~al~~Aa~~AGl~~~~----li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~ 511 (1212)
....++|...||..-. -+=+.-|.++.-+.- ..+-|++=+|-+|+.+.+-+-.. .-.|. -.+
T Consensus 232 ~Lt~e~A~~lGL~~~~~Vs~g~IDAhag~~Gv~~~---------~~~~l~~I~GTStC~m~~s~~~~---~v~Gv--wGp 297 (544)
T COG1069 232 GLTPEAAQELGLPEGTVVSAGIIDAHAGAVGVGGA---------QPGSLAMIAGTSTCHMLLSEKPR---FVPGV--WGP 297 (544)
T ss_pred ccCHHHHHHhCCCCCcEEeccceeccccccccccC---------CCCeEEEEeccceEEEEecCCce---ecCcc--ccc
Confidence 3456788888885321 112222222222111 12234444788888777665220 01121 122
Q ss_pred eEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcc-------cCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEee
Q psy18164 512 QVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMK-------KTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEG 584 (1212)
Q Consensus 512 ~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~-------~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~ 584 (1212)
....+.-++-..=||..-.=.|.+||.+....-. +.+.++. .....++..-+++.+...+-... ...++.
T Consensus 298 y~~ai~Pg~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~l~~~-l~~l~~ 374 (544)
T COG1069 298 YDGAVLPGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIY--ESLAQRLELLTEAAAAIPPLASG-LHVLDW 374 (544)
T ss_pred cccccCcchhhhcccchhhhHHHHHHHHhCCcccchhhccchhhhHHH--HHHHHHHHHHHhhHhccCcccCC-cEeccc
Confidence 3333333444556777777788888877642100 1011111 12344444455666665543322 122222
Q ss_pred ccc------CcceEEE-------EeHHHHHHHHHHHHHHH---HHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHH
Q psy18164 585 LID------EIDFKLL-------VTRAEFEALNEDLFDRV---GYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKI 648 (1212)
Q Consensus 585 l~~------~~d~~~~-------itR~efe~l~~~l~~~i---~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l 648 (1212)
++. |.+.+-. =+.+.+-.+..-.+.-+ ...|-+++++.|+. |+.|.+.||..+-|.+.+++
T Consensus 375 f~GNRsP~aDp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g~~---Id~l~~sGG~~KN~llmql~ 451 (544)
T COG1069 375 FNGNRSPLADPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFEDQGIA---IDTLFASGGIRKNPLLMQLY 451 (544)
T ss_pred ccCCcCCCCCccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCe---eeEEEecCCcccCHHHHHHH
Confidence 221 2222222 22332323333333222 24455666776654 88999999999999999999
Q ss_pred HHHhCCcccCCCCchhHHHhhHHHHHHhhcCC
Q psy18164 649 TKVVGVELSKNLNTDEAAALGAVYKAADLSTG 680 (1212)
Q Consensus 649 ~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~~ 680 (1212)
.++.|..+... ..++++++|+|+.||.-.+.
T Consensus 452 aDvtg~~v~i~-~s~~a~llGsAm~~avAag~ 482 (544)
T COG1069 452 ADVTGRPVVIP-ASDQAVLLGAAMFAAVAAGV 482 (544)
T ss_pred HHhcCCeEEee-cccchhhhHHHHHHHHHhcc
Confidence 99999766555 67899999999999976654
|
|
| >PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.011 Score=63.17 Aligned_cols=48 Identities=29% Similarity=0.398 Sum_probs=42.8
Q ss_pred CccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHh
Q psy18164 628 VISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAAD 676 (1212)
Q Consensus 628 ~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ 676 (1212)
.++.|.++||.++.|.+.+++.++||.++...-+ .|+.|+|||+.|+.
T Consensus 149 ~~~~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 149 PIRRIRVSGGGAKNPLWMQILADVLGRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp CESEEEEESGGGGSHHHHHHHHHHHTSEEEEESS-STHHHHHHHHHHHH
T ss_pred cceeeEeccccccChHHHHHHHHHhCCceEeCCC-CchHHHHHHHHHHh
Confidence 4889999999999999999999999987766555 89999999999974
|
These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A .... |
| >PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.11 Score=61.48 Aligned_cols=88 Identities=16% Similarity=0.176 Sum_probs=52.3
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCCeeeee---chhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEe
Q psy18164 422 AVIIVPGYFNQIERQSMLKAGELAGLKVLQLM---NDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQV 498 (1212)
Q Consensus 422 ~VItVP~~f~~~qR~al~~Aa~~AGl~~~~li---~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~ 498 (1212)
++||==.--.++.|..+..-+..||==|+.-- -|..=|+-..|.... .......|+=+|+||||+.+++++-
T Consensus 88 VIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~---S~~~~~~V~NiDIGGGTtN~avf~~-- 162 (473)
T PF06277_consen 88 VIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAAL---SKEHHTVVANIDIGGGTTNIAVFDN-- 162 (473)
T ss_pred EEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHH---hhhhCCeEEEEEeCCCceeEEEEEC--
Confidence 56666666667777777777777764333221 122223221111110 1111578999999999999999983
Q ss_pred eecccCCccccCCeEEEEEEecCCCCChHHH
Q psy18164 499 VKTKERGFVETHPQVSVLGVGYDRTLGGLEM 529 (1212)
Q Consensus 499 ~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~ 529 (1212)
| ++++++. .++||+-|
T Consensus 163 ------G--------~v~~T~c-l~IGGRLi 178 (473)
T PF06277_consen 163 ------G--------EVIDTAC-LDIGGRLI 178 (473)
T ss_pred ------C--------EEEEEEE-EeeccEEE
Confidence 4 3455554 57999876
|
The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO. |
| >TIGR01175 pilM type IV pilus assembly protein PilM | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.16 Score=59.76 Aligned_cols=65 Identities=22% Similarity=0.214 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCe-EEEEEecCCceEEEEEEE
Q psy18164 184 NQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPV-HVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 184 ~~~qr~~l~~Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~-~vlV~D~GggT~Dvsvv~ 248 (1212)
.....+.+.++++.||++...+..+|.|.+-.+..-........... .++++|+|+++++++++.
T Consensus 141 ~~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~ 206 (348)
T TIGR01175 141 RKEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLH 206 (348)
T ss_pred cHHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEE
Confidence 34567789999999999999998899888765531000000111123 499999999999999984
|
This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria. |
| >PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.13 Score=65.75 Aligned_cols=54 Identities=17% Similarity=0.238 Sum_probs=43.5
Q ss_pred ceeeHHHHHHHHHHHHHHHHHHhcC--------------CccccEEEccCCCCCHHHHHHHHHHHHHc
Q psy18164 145 ELYHVEELVAMLLHKAREYASVSAG--------------QVINEAVIIVPGYFNQIERQSMLKAGELA 198 (1212)
Q Consensus 145 ~~~s~~ev~~~~L~~l~~~a~~~~~--------------~~~~~~VitVPa~f~~~qr~~l~~Aa~~A 198 (1212)
..||-..+++++|..|+-+|-.+.+ +..+++++|+|....-.+|+.++++++.|
T Consensus 415 p~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~A 482 (1002)
T PF07520_consen 415 PHYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEA 482 (1002)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHH
Confidence 4578889999999999988855433 23577999999999999988888877755
|
It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity []. |
| >PRK15027 xylulokinase; Provisional | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.058 Score=66.36 Aligned_cols=83 Identities=18% Similarity=0.177 Sum_probs=59.6
Q ss_pred EeHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHH
Q psy18164 595 VTRAEFEAL-NEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYK 673 (1212)
Q Consensus 595 itR~efe~l-~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~ 673 (1212)
-+|.+|-.. ++-+.-.+...+ +.++..+. .++.|.++||+++.+...+++.+++|.++....+.+++.++|||+.
T Consensus 356 ~~~~~l~rAvlEgia~~~~~~~-~~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~~~~~a~GaA~l 431 (484)
T PRK15027 356 HGPNELARAVLEGVGYALADGM-DVVHACGI---KPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARL 431 (484)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-HHHHHcCC---CccEEEEeCcccCCHHHHHHHHHHhCCeEEeecCCCcchHHHHHHH
Confidence 356666543 333333333444 33444443 4788999999999999999999999988866667777899999999
Q ss_pred HHhhcCCc
Q psy18164 674 AADLSTGF 681 (1212)
Q Consensus 674 aa~ls~~f 681 (1212)
|+.-.+.+
T Consensus 432 A~~~~G~~ 439 (484)
T PRK15027 432 AQIAANPE 439 (484)
T ss_pred HHHhcCCc
Confidence 98765543
|
|
| >TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.55 Score=54.45 Aligned_cols=45 Identities=20% Similarity=0.261 Sum_probs=40.4
Q ss_pred cEEEEEcCCcCCHHHHHHHHHHhC-----CcccCCCCchhHHHhhHHHHH
Q psy18164 630 SQVILVGAGTRVPKVQEKITKVVG-----VELSKNLNTDEAAALGAVYKA 674 (1212)
Q Consensus 630 ~~ViLvGGssriP~Vq~~l~~~fg-----~~i~~~~n~deaVA~GAa~~a 674 (1212)
..|+|+||.++.+.+.+.|++.++ .++..+.+|+.+-|+|||++|
T Consensus 383 ~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 383 DQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 469999999999999999999994 457778999999999999975
|
This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type). |
| >PLN02669 xylulokinase | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.09 Score=65.58 Aligned_cols=71 Identities=15% Similarity=0.249 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHh
Q psy18164 604 NEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAAD 676 (1212)
Q Consensus 604 ~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ 676 (1212)
+..+++.+.=-++..++..+.. ..++.|+++||+|+.+.+.+++.++||..+.+.- ..++.|+|||+.|+.
T Consensus 422 ~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVlg~pV~~~~-~~ea~alGAA~~A~~ 492 (556)
T PLN02669 422 VRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIFGCDVYTVQ-RPDSASLGAALRAAH 492 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHcCCCeEecC-CCCchHHHHHHHHHH
Confidence 3334444333333333333322 3578999999999999999999999998765444 447889999999986
|
|
| >TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.1 Score=65.07 Aligned_cols=85 Identities=14% Similarity=0.190 Sum_probs=62.2
Q ss_pred EeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHH
Q psy18164 595 VTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKA 674 (1212)
Q Consensus 595 itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~a 674 (1212)
-+|..+..++.-+++-+.--++.+++...-....++.|.++||+++.+...+++.+++|.++...-+ .|++++|||+.|
T Consensus 410 ~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~-~e~~alGaA~lA 488 (541)
T TIGR01315 410 RSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADACDMPVLIPYV-NEAVLHGAAMLG 488 (541)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHHCCeeEecCh-hHHHHHHHHHHH
Confidence 3576777777777776665555444433211124788999999999999999999999988866544 568899999999
Q ss_pred HhhcCC
Q psy18164 675 ADLSTG 680 (1212)
Q Consensus 675 a~ls~~ 680 (1212)
+.-.+.
T Consensus 489 ~~~~G~ 494 (541)
T TIGR01315 489 AKAAGT 494 (541)
T ss_pred HHhcCc
Confidence 865543
|
This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins. |
| >PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X | Back alignment and domain information |
|---|
Probab=94.29 E-value=1.1 Score=53.21 Aligned_cols=86 Identities=16% Similarity=0.142 Sum_probs=50.7
Q ss_pred CcceEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHH-HHhCC-cccCCCCchhH
Q psy18164 588 EIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKIT-KVVGV-ELSKNLNTDEA 665 (1212)
Q Consensus 588 ~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~-~~fg~-~i~~~~n~dea 665 (1212)
+..-.+.||..+.+++.. --.-+..-++-.|++++++.+||+.|+|.||..+.=-+++.+. -.++. ...+-.-.-.+
T Consensus 288 ~~~~~i~itq~DIr~~ql-AKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~iGLlP~~~~~kv~~~GN~ 366 (412)
T PF14574_consen 288 DIGDDIYITQKDIREFQL-AKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIRIGLLPDVPAEKVRFVGNA 366 (412)
T ss_dssp SSSS-EEEEHHHHHHHHH-HHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHHTTSS--S-GGGEEEEC-H
T ss_pred CCCCCEEEeHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhhcCCCCCccccCEEEECcH
Confidence 334467899999987532 2345666778889999999999999999999988777777764 22331 11121222335
Q ss_pred HHhhHHHHH
Q psy18164 666 AALGAVYKA 674 (1212)
Q Consensus 666 VA~GAa~~a 674 (1212)
+-.||.+..
T Consensus 367 al~GA~~~L 375 (412)
T PF14574_consen 367 ALAGARMAL 375 (412)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 566665544
|
|
| >PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.59 Score=55.53 Aligned_cols=73 Identities=14% Similarity=0.112 Sum_probs=43.8
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHcCCceEEEec---chhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEE
Q psy18164 175 AVIIVPGYFNQIERQSMLKAGELAGLKVLQLMN---DYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQ 250 (1212)
Q Consensus 175 ~VitVPa~f~~~qr~~l~~Aa~~AGl~~~~li~---EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~ 250 (1212)
++||==+--.+++|..+..-+..||==++.--- |..-|+-..+.... .......|+=+|+||||+.+++++-.
T Consensus 88 VIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~---S~~~~~~V~NiDIGGGTtN~avf~~G 163 (473)
T PF06277_consen 88 VIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAAL---SKEHHTVVANIDIGGGTTNIAVFDNG 163 (473)
T ss_pred EEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHH---hhhhCCeEEEEEeCCCceeEEEEECC
Confidence 566665666677777777777777653333221 44444332221111 11124589999999999999998643
|
The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO. |
| >COG5277 Actin and related proteins [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.61 Score=56.06 Aligned_cols=160 Identities=13% Similarity=0.042 Sum_probs=96.2
Q ss_pred EEEEcCCcceEEEEEECCCceEEecCCCCCcc-cceEEE-EecCceeEccchhhhhccCCCChHHHHHHHhCCCCCCHHH
Q psy18164 39 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRK-TPTLVA-FHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVV 116 (1212)
Q Consensus 39 vGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~-~PS~V~-~~~~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~~~ 116 (1212)
|-||.||-.++++++.+..|.-+.++..+.+. ..++.. -..+...+|+++...... +..
T Consensus 9 iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~~-~~~------------------ 69 (444)
T COG5277 9 IVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDN-SLL------------------ 69 (444)
T ss_pred EEEeCCCceEEeeecCCCCceeecccccccccccccccccccccccccCchhhhccCC-ccc------------------
Confidence 89999999999999988766666655555543 333332 124455666665432110 000
Q ss_pred HHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcC--CccccEEEccCCCCCHHHHHHHHHH
Q psy18164 117 QLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAG--QVINEAVIIVPGYFNQIERQSMLKA 194 (1212)
Q Consensus 117 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~--~~~~~~VitVPa~f~~~qr~~l~~A 194 (1212)
.+.....+ |. +.-=+....+.+++...- .++. ..-..+++|-|..+...+|..+.+.
T Consensus 70 ----------~~~~p~~~---------g~-i~~W~~~e~~w~~~~~~~-~~~~~~~~~~pllltep~~n~~~~re~~~e~ 128 (444)
T COG5277 70 ----------ELRYPIEN---------GI-ILNWDAMEQIWDYTFFNK-GDLLPSPEEHPLLLTEPPLNPPSNREKITEL 128 (444)
T ss_pred ----------eeeccccc---------Cc-cCCcHHHHHHHHHhhcch-hhccCCCcCCceEEeccCCCcHHHHHHHHHH
Confidence 00000011 11 111134555666555442 1111 1123599999999999998876665
Q ss_pred H-HHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEE
Q psy18164 195 G-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIV 247 (1212)
Q Consensus 195 a-~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv 247 (1212)
+ +...+..+.+...+.+++++.+... .+.+|+|+|.+.++|+=|
T Consensus 129 ~fE~~~vp~~~~~~~~~l~~ya~g~~~---------~~g~ViD~G~~~t~v~PV 173 (444)
T COG5277 129 LFETLNVPALYLAIQAVLSLYASGSSD---------ETGLVIDSGDSVTHVIPV 173 (444)
T ss_pred HHHhcCCcceEeeHHHHHHHHhcCCCC---------CceEEEEcCCCceeeEee
Confidence 5 6667777778888887777665422 267999999999988644
|
|
| >PRK00047 glpK glycerol kinase; Provisional | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.17 Score=62.64 Aligned_cols=52 Identities=19% Similarity=0.207 Sum_probs=44.1
Q ss_pred CccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcCC
Q psy18164 628 VISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTG 680 (1212)
Q Consensus 628 ~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~~ 680 (1212)
.++.|.++||++|.|...+++.++||.++... +..|+.++|||+.|+.-.+.
T Consensus 403 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~-~~~e~~a~GaA~~A~~~~G~ 454 (498)
T PRK00047 403 RLKELRVDGGAVANNFLMQFQADILGVPVERP-VVAETTALGAAYLAGLAVGF 454 (498)
T ss_pred CCceEEEecCcccCHHHHHHHHHhhCCeeEec-CcccchHHHHHHHHhhhcCc
Confidence 37889999999999999999999999887544 45578999999999865554
|
|
| >TIGR01312 XylB D-xylulose kinase | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.18 Score=61.97 Aligned_cols=53 Identities=25% Similarity=0.333 Sum_probs=45.3
Q ss_pred CccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcCCc
Q psy18164 628 VISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGF 681 (1212)
Q Consensus 628 ~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~~f 681 (1212)
.++.|.++||++|.+.+.+++.++||.++.... ..|+.++|||+.|+.-.+.|
T Consensus 390 ~~~~i~~~GG~s~s~~~~Q~~Adv~g~pv~~~~-~~e~~a~GaA~~a~~~~g~~ 442 (481)
T TIGR01312 390 PIQSIRLIGGGAKSPAWRQMLADIFGTPVDVPE-GEEGPALGAAILAAWALGEK 442 (481)
T ss_pred CcceEEEeccccCCHHHHHHHHHHhCCceeecC-CCcchHHHHHHHHHHhcCCC
Confidence 478999999999999999999999998776544 66789999999998766543
|
D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization. |
| >PF13941 MutL: MutL protein | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.26 Score=58.89 Aligned_cols=43 Identities=33% Similarity=0.543 Sum_probs=31.0
Q ss_pred EEEEEcCCcceEEEEEE--CCCceEEecCCCCCcccceEEEEecCceeEccc
Q psy18164 38 VMSVDLGSEWMKVAIVS--PGVPMEIALNKESKRKTPTLVAFHKGERTFGED 87 (1212)
Q Consensus 38 vvGIDfGTt~s~va~~~--~g~~~~ii~~~~g~~~~PS~V~~~~~~~~iG~~ 87 (1212)
++.+|||+|||.+..++ .+. .+++ |....||.| -. +.+.+|..
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~-~~~i----g~a~apTTv-~~-~Dv~~G~~ 46 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGE-PRLI----GQAEAPTTV-EP-GDVTIGLN 46 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCc-cEEE----EEEeCCCCc-Cc-ccHHHHHH
Confidence 68999999999999998 553 4566 566678877 22 45555543
|
|
| >TIGR01311 glycerol_kin glycerol kinase | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.15 Score=62.84 Aligned_cols=52 Identities=23% Similarity=0.250 Sum_probs=44.4
Q ss_pred CccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcCC
Q psy18164 628 VISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTG 680 (1212)
Q Consensus 628 ~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~~ 680 (1212)
.++.|.++||++|.+...+++.++||.++.. .+..|+.|+|||+.|+.-.+.
T Consensus 399 ~~~~i~~~GGga~s~~w~Qi~ADv~g~pv~~-~~~~e~~alGaA~~a~~~~G~ 450 (493)
T TIGR01311 399 EITKLRVDGGMTNNNLLMQFQADILGVPVVR-PKVTETTALGAAYAAGLAVGY 450 (493)
T ss_pred CCceEEEecccccCHHHHHHHHHhcCCeeEe-cCCCcchHHHHHHHHHhhcCc
Confidence 4788999999999999999999999988865 445678899999999865543
|
This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases. |
| >PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3 | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.18 Score=57.39 Aligned_cols=68 Identities=10% Similarity=0.123 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhC-CcccCCCCchhHHHhhHHHH
Q psy18164 603 LNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG-VELSKNLNTDEAAALGAVYK 673 (1212)
Q Consensus 603 l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg-~~i~~~~n~deaVA~GAa~~ 673 (1212)
+++-..+++.+.|+++....+..+.+. .++.+||++ |++-..|.+.+| ..+..+..+.-+-|.||++-
T Consensus 216 i~~~~~~~m~~~i~~~~~~~g~~~~~~-~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~a 284 (290)
T PF01968_consen 216 IVRIANENMADAIREVSVERGYDPRDF-PLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAVA 284 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--EEEE---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCcccc-ccccccccc--ccccccccccccccccccccccccccccccccc
Confidence 333444555555555544446554442 355566665 777788888888 55666666788889998753
|
5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B. |
| >TIGR01234 L-ribulokinase L-ribulokinase | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.22 Score=62.13 Aligned_cols=81 Identities=16% Similarity=0.068 Sum_probs=55.9
Q ss_pred EeHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCC-cCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHH
Q psy18164 595 VTRAEFEALNE-DLFDRVGYPVEQALKSSAVPMDVISQVILVGAG-TRVPKVQEKITKVVGVELSKNLNTDEAAALGAVY 672 (1212)
Q Consensus 595 itR~efe~l~~-~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGs-sriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~ 672 (1212)
-+|.+|-..+- -+.-.+... -+.|+..+. .++.|.++||+ ++.+...+++.++||.++...-++ |+.|+|||+
T Consensus 405 ~~~~~~~RAvlEgia~~~~~~-l~~l~~~g~---~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~~-e~~a~GaA~ 479 (536)
T TIGR01234 405 TDAPLLYRALIEATAFGTRMI-METFTDSGV---PVEELMAAGGIARKNPVIMQIYADVTNRPLQIVASD-QAPALGAAI 479 (536)
T ss_pred CCHHHHHHHHHHHHHHHHHHH-HHHHHhcCC---CcceEEEeCCccccCHHHHHHHHHhhCCeeEeccCC-cchhHHHHH
Confidence 35655443322 222233333 333444443 47899999999 999999999999999888666554 688999999
Q ss_pred HHHhhcCC
Q psy18164 673 KAADLSTG 680 (1212)
Q Consensus 673 ~aa~ls~~ 680 (1212)
.|+.-.+.
T Consensus 480 lA~~~~G~ 487 (536)
T TIGR01234 480 FAAVAAGV 487 (536)
T ss_pred HHHHHcCC
Confidence 99876554
|
This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli. |
| >PRK04123 ribulokinase; Provisional | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.2 Score=62.64 Aligned_cols=52 Identities=23% Similarity=0.268 Sum_probs=43.7
Q ss_pred CccEEEEEcCC-cCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcCC
Q psy18164 628 VISQVILVGAG-TRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTG 680 (1212)
Q Consensus 628 ~i~~ViLvGGs-sriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~~ 680 (1212)
.++.|.++||+ +|.+...+++.++||.++...- ..|+.++|||+.|+.-.+.
T Consensus 438 ~~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~~-~~e~~alGaA~lA~~~~G~ 490 (548)
T PRK04123 438 PVEEVIAAGGIARKNPVLMQIYADVLNRPIQVVA-SDQCPALGAAIFAAVAAGA 490 (548)
T ss_pred CcceEEEeCCCcccCHHHHHHHHHhcCCceEecC-ccccchHHHHHHHHHHhcc
Confidence 47889999999 9999999999999998775444 4578899999999865443
|
|
| >TIGR02628 fuculo_kin_coli L-fuculokinase | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.23 Score=60.85 Aligned_cols=52 Identities=15% Similarity=0.151 Sum_probs=44.1
Q ss_pred CccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcCC
Q psy18164 628 VISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTG 680 (1212)
Q Consensus 628 ~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~~ 680 (1212)
.++.|.++||+++.|...+++.++||.++...-+ .|+.++|||+.|+.-.+.
T Consensus 393 ~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~-~e~~~lGaA~~a~~a~G~ 444 (465)
T TIGR02628 393 KASELLLVGGGSKNTLWNQIRANMLDIPVKVVDD-AETTVAGAAMFGFYGVGE 444 (465)
T ss_pred CcceEEEecCccCCHHHHHHhhhhcCCeeEeccC-CcchHHHHHHHHHHhcCc
Confidence 4788999999999999999999999988765544 478899999999866543
|
Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon. |
| >PTZ00294 glycerol kinase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.24 Score=61.25 Aligned_cols=51 Identities=18% Similarity=0.146 Sum_probs=43.8
Q ss_pred ccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcCC
Q psy18164 629 ISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTG 680 (1212)
Q Consensus 629 i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~~ 680 (1212)
++.|.++||+++.+...+++.++||.++...- ..|+.++|||+.|+.-.+.
T Consensus 407 ~~~i~~~GG~a~s~~w~Qi~Adv~g~pV~~~~-~~e~~alGaAl~aa~a~G~ 457 (504)
T PTZ00294 407 LNSLRVDGGLTKNKLLMQFQADILGKDIVVPE-MAETTALGAALLAGLAVGV 457 (504)
T ss_pred cceEEEecccccCHHHHHHHHHHhCCceEecC-cccchHHHHHHHHHhhcCc
Confidence 78899999999999999999999998876544 5568899999999865554
|
|
| >PRK10331 L-fuculokinase; Provisional | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.26 Score=60.38 Aligned_cols=53 Identities=19% Similarity=0.187 Sum_probs=44.7
Q ss_pred CccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcCCc
Q psy18164 628 VISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGF 681 (1212)
Q Consensus 628 ~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~~f 681 (1212)
.++.|.++||++|.|...+++.+++|.++...- ..|++++|||+.|+.-.+.|
T Consensus 389 ~~~~i~~~GGga~s~~w~Qi~Advlg~pV~~~~-~~e~~a~GaA~la~~~~G~~ 441 (470)
T PRK10331 389 KASELLLVGGGSRNALWNQIKANMLDIPIKVLD-DAETTVAGAAMFGWYGVGEF 441 (470)
T ss_pred CCceEEEEcccccCHHHHHHHHHhcCCeeEecC-cccchHHHHHHHHHHhcCCC
Confidence 478999999999999999999999998875544 45788999999998755543
|
|
| >PLN02295 glycerol kinase | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.29 Score=60.72 Aligned_cols=53 Identities=19% Similarity=0.152 Sum_probs=44.6
Q ss_pred CCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcCC
Q psy18164 627 DVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTG 680 (1212)
Q Consensus 627 ~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~~ 680 (1212)
..++.|.++||+++.|...+++.++||.++... +..|+.|+|||+.|+.-.+.
T Consensus 411 ~~~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~~-~~~e~~alGaA~~A~~~~G~ 463 (512)
T PLN02295 411 KGLFLLRVDGGATANNLLMQIQADLLGSPVVRP-ADIETTALGAAYAAGLAVGL 463 (512)
T ss_pred CCcceEEEeccchhCHHHHHHHHHhcCCceEec-CccccHHHHHHHHHHhhcCc
Confidence 357889999999999999999999999888543 45578999999999866554
|
|
| >TIGR02627 rhamnulo_kin rhamnulokinase | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.31 Score=59.53 Aligned_cols=52 Identities=21% Similarity=0.263 Sum_probs=44.2
Q ss_pred CccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcCCc
Q psy18164 628 VISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGF 681 (1212)
Q Consensus 628 ~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~~f 681 (1212)
.++.|.++||++|.+...+++.+++|.++... . .|+.|+|||+.|+.-.+.+
T Consensus 387 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~-~-~e~~a~GaA~~a~~~~G~~ 438 (454)
T TIGR02627 387 PISQLHIVGGGSQNAFLNQLCADACGIRVIAG-P-VEASTLGNIGVQLMALDEI 438 (454)
T ss_pred CcCEEEEECChhhhHHHHHHHHHHhCCceEcC-C-chHHHHHHHHHHHHhcCCc
Confidence 47889999999999999999999999888543 3 6799999999998765543
|
This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism. |
| >TIGR01314 gntK_FGGY gluconate kinase, FGGY type | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.44 Score=59.04 Aligned_cols=81 Identities=9% Similarity=0.005 Sum_probs=55.5
Q ss_pred eHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHH
Q psy18164 596 TRAEFEA-LNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKA 674 (1212)
Q Consensus 596 tR~efe~-l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~a 674 (1212)
+|.+|-. +++-+.-.+...++...+..+. .++.|.++||+++.+...+++.++||.++...-++ |+.++|||+.|
T Consensus 371 ~~~~l~rAvlEgia~~~~~~~~~~~~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~-e~~a~GaA~la 446 (505)
T TIGR01314 371 KKEHMIRAALEGVIYNLYTVALALVEVMGD---PLNMIQATGGFASSEVWRQMMSDIFEQEIVVPESY-ESSCLGACILG 446 (505)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEecCcccCHHHHHHHHHHcCCeeEecCCC-CcchHHHHHHH
Confidence 4444433 2233333334444443333342 47899999999999999999999999888655544 68899999999
Q ss_pred HhhcCC
Q psy18164 675 ADLSTG 680 (1212)
Q Consensus 675 a~ls~~ 680 (1212)
+.-.+.
T Consensus 447 ~~~~G~ 452 (505)
T TIGR01314 447 LKALGL 452 (505)
T ss_pred HHhcCc
Confidence 876554
|
Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway. |
| >KOG2517|consensus | Back alignment and domain information |
|---|
Probab=91.97 E-value=0.47 Score=57.12 Aligned_cols=75 Identities=17% Similarity=0.219 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcCCc
Q psy18164 603 LNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGF 681 (1212)
Q Consensus 603 l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~~f 681 (1212)
+++-+--++...|+..-++.+ ..|+.+.+.||.|+-|.+.+.+.+.+|.++.++.+.|- |+.|||+.|+..++.+
T Consensus 392 ~leai~fqtr~Il~am~~~~~---~~i~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~~e~-~~~GaA~l~~~a~~~~ 466 (516)
T KOG2517|consen 392 ALEAIAFQTREILEAMERDGG---HPISTLRVCGGLSKNPLLMQLQADILGLPVVRPQDVEA-VALGAAMLAGAASGKW 466 (516)
T ss_pred HHHHHHHHHHHHHHHHHHhcC---CCcceeeeccccccCHHHHHHHHHHhCCccccccchhH-HHHHHHHHHHhhcCCc
Confidence 344444555555555544443 46778999999999999999999999999999999987 9999999999888763
|
|
| >KOG2531|consensus | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.43 Score=55.38 Aligned_cols=54 Identities=22% Similarity=0.362 Sum_probs=46.5
Q ss_pred cCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHh
Q psy18164 622 SAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAAD 676 (1212)
Q Consensus 622 a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ 676 (1212)
.+.....-..|+++||+||--.|-+.|.++||..+..- +..+++++|+||.|+.
T Consensus 436 lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf~apVy~~-~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 436 LGFKSNPPTRILVTGGASRNEAILQIIADVFGAPVYTI-EGPNSAALGGAYRAAY 489 (545)
T ss_pred ccCCCCCCceEEEecCccccHHHHHHHHHHhCCCeEee-cCCchhhHHHHHHHHH
Confidence 35666678899999999999999999999999766544 8889999999999874
|
|
| >PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T | Back alignment and domain information |
|---|
Probab=91.69 E-value=0.36 Score=47.27 Aligned_cols=48 Identities=25% Similarity=0.377 Sum_probs=26.5
Q ss_pred EEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCC--hHHHH--HHHHHHH
Q psy18164 479 VMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLG--GLEMQ--IRLRDFL 537 (1212)
Q Consensus 479 vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lG--G~~~D--~~l~~~l 537 (1212)
|+++|+|++++.+.+++.. ....+++++.+.....| |..+. ..+.+-+
T Consensus 1 i~~iDiGs~~~~~~i~~~~-----------~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i 52 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDG-----------SDGYIRVLGVGEVPSKGIKGGHITDIEDISKAI 52 (120)
T ss_dssp EEEEEE-SSSEEEEEEETT-----------EEEEEEEES----------HHHHH--HHHHHHH
T ss_pred CEEEEcCCCcEEEEEEEeC-----------CCCcEEEEEEecccccccCCCEEEEHHHHHHHH
Confidence 6899999999999999852 12356777665433333 55555 4444443
|
|
| >TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D | Back alignment and domain information |
|---|
Probab=91.59 E-value=0.65 Score=51.53 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=37.9
Q ss_pred EEEEEcCCcCCHHHHHHHHHHhC-Cc----ccCCCCchhHHHhhHHHHH
Q psy18164 631 QVILVGAGTRVPKVQEKITKVVG-VE----LSKNLNTDEAAALGAVYKA 674 (1212)
Q Consensus 631 ~ViLvGGssriP~Vq~~l~~~fg-~~----i~~~~n~deaVA~GAa~~a 674 (1212)
.|+|.||.++.+.+.+.|++.++ .+ +..+.+|+.+-|+|||++|
T Consensus 214 ~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 214 TVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred cEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 59999999999999999999995 23 4556788999999999875
|
This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain. |
| >PRK10640 rhaB rhamnulokinase; Provisional | Back alignment and domain information |
|---|
Probab=91.40 E-value=0.44 Score=58.37 Aligned_cols=52 Identities=19% Similarity=0.233 Sum_probs=44.0
Q ss_pred CccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcCCc
Q psy18164 628 VISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGF 681 (1212)
Q Consensus 628 ~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~~f 681 (1212)
.++.|.++||++|.+...+++.+++|.++.... .|+.++|||+.|+.-.+.+
T Consensus 375 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~--~ea~alGaa~~a~~a~G~~ 426 (471)
T PRK10640 375 PFSQLHIVGGGCQNALLNQLCADACGIRVIAGP--VEASTLGNIGIQLMTLDEL 426 (471)
T ss_pred CcceEEEECChhhhHHHHHHHHHHhCCCeeeCC--hhHHHHHHHHHHHHHcCCc
Confidence 478899999999999999999999998885543 3799999999998766543
|
|
| >TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type | Back alignment and domain information |
|---|
Probab=90.96 E-value=2 Score=48.40 Aligned_cols=46 Identities=11% Similarity=0.128 Sum_probs=39.5
Q ss_pred CCccEEEEEcC-CcCCHHHHHHHHHHhC---CcccCCCCchhHHHhhHHH
Q psy18164 627 DVISQVILVGA-GTRVPKVQEKITKVVG---VELSKNLNTDEAAALGAVY 672 (1212)
Q Consensus 627 ~~i~~ViLvGG-ssriP~Vq~~l~~~fg---~~i~~~~n~deaVA~GAa~ 672 (1212)
..+..|+++|| .+..|.+++.+..++. .+....-|....+|+||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 45788999999 6779999999998875 5677788999999999986
|
This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA). |
| >PRK10939 autoinducer-2 (AI-2) kinase; Provisional | Back alignment and domain information |
|---|
Probab=90.83 E-value=0.52 Score=58.58 Aligned_cols=52 Identities=21% Similarity=0.261 Sum_probs=44.1
Q ss_pred CccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcCC
Q psy18164 628 VISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTG 680 (1212)
Q Consensus 628 ~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~~ 680 (1212)
.++.|.++||++|.+...+++.+++|.++...-++ |+.++|||+.|+.-.+.
T Consensus 409 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~-e~~alGaA~lA~~~~G~ 460 (520)
T PRK10939 409 FPSSLVFAGGGSKGKLWSQILADVTGLPVKVPVVK-EATALGCAIAAGVGAGI 460 (520)
T ss_pred CCcEEEEeCCcccCHHHHHHHHHhcCCeeEEeccc-CchHHHHHHHHHHHhCC
Confidence 47889999999999999999999999888655544 68899999999865543
|
|
| >COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown] | Back alignment and domain information |
|---|
Probab=90.83 E-value=1.3 Score=53.40 Aligned_cols=53 Identities=15% Similarity=0.225 Sum_probs=39.0
Q ss_pred ceeeHHHHHHHHHHHHHHHHHHhcC--------------CccccEEEccCCCCCHHHHHHHHHHHHH
Q psy18164 145 ELYHVEELVAMLLHKAREYASVSAG--------------QVINEAVIIVPGYFNQIERQSMLKAGEL 197 (1212)
Q Consensus 145 ~~~s~~ev~~~~L~~l~~~a~~~~~--------------~~~~~~VitVPa~f~~~qr~~l~~Aa~~ 197 (1212)
..++-..+++++|..|+.+|-.+.+ +..+.+++|+|....-..|+.+++-+..
T Consensus 422 p~ySRSslmTfML~EilaqAl~qiNsp~tR~kl~~~~aPR~LRsiILTlPsAmPk~EreIfr~r~~e 488 (1014)
T COG4457 422 PCYSRSSLMTFMLSEILAQALSQINSPATRLKLRHKDAPRQLRSIILTLPSAMPKQEREIFRQRMEE 488 (1014)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhcCHHHhhhhccCCchHhhhhheeeCCccCCchHHHHHHHHHHH
Confidence 3577788999999999888865443 2235689999999987777766655543
|
|
| >COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=90.52 E-value=3.4 Score=52.23 Aligned_cols=48 Identities=19% Similarity=0.248 Sum_probs=33.3
Q ss_pred HHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEE
Q psy18164 443 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 495 (1212)
Q Consensus 443 ~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~ 495 (1212)
...+..+..+++-|.|-.+......... . . +++++||||.|||++++.
T Consensus 249 ~a~~~pv~tI~SGPAagvvGAa~ltg~~---~-g-~~i~~DmGGTStDva~i~ 296 (674)
T COG0145 249 EAREKPVETILSGPAAGVVGAAYLTGLK---A-G-NAIVFDMGGTSTDVALII 296 (674)
T ss_pred HHhcCCeeeEeeccHHHHHHHHHhcccc---c-C-CEEEEEcCCcceeeeeee
Confidence 3345566667788877766654431211 1 2 699999999999999997
|
|
| >KOG0677|consensus | Back alignment and domain information |
|---|
Probab=90.25 E-value=6.5 Score=42.53 Aligned_cols=194 Identities=18% Similarity=0.196 Sum_probs=112.0
Q ss_pred ceEEEecCCCCCHHHHHHHHHH-HHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEe
Q psy18164 420 NEAVIIVPGYFNQIERQSMLKA-GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQV 498 (1212)
Q Consensus 420 ~~~VItVP~~f~~~qR~al~~A-a~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~ 498 (1212)
..+.+|=|+-=...-|+.|.+. .+.-||.-+.+. -.|+.--|+..- -.=+|+|-|-|-|-+.=+-
T Consensus 102 ~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyva--iQAVLtLYAQGL---------~tGvVvDSGDGVTHi~PVy--- 167 (389)
T KOG0677|consen 102 CKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVA--IQAVLTLYAQGL---------LTGVVVDSGDGVTHIVPVY--- 167 (389)
T ss_pred CeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEeh--HHHHHHHHHhcc---------cceEEEecCCCeeEEeeee---
Confidence 3678999988777777776654 456688765443 233333354322 2238999999987765442
Q ss_pred eecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCC---
Q psy18164 499 VKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSAN--- 575 (1212)
Q Consensus 499 ~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n--- 575 (1212)
.| +..-.-.....+.|+++++-|.+.+..+=-.- ....|. ......|+.|.--
T Consensus 168 -----e~-------~~l~HLtrRldvAGRdiTryLi~LLl~rGYaf-N~tADF-----------ETVR~iKEKLCYisYd 223 (389)
T KOG0677|consen 168 -----EG-------FVLPHLTRRLDVAGRDITRYLIKLLLRRGYAF-NHTADF-----------ETVREIKEKLCYISYD 223 (389)
T ss_pred -----cc-------eehhhhhhhccccchhHHHHHHHHHHhhcccc-ccccch-----------HHHHHHHhhheeEeec
Confidence 12 11111223456889999999999888762110 011121 1233344444311
Q ss_pred --------ceeEEEEee--cccCcceEEEEeHHHHH---HHHHHHH-----HHHHHHHHHHHHhcCCCC--CCccEEEEE
Q psy18164 576 --------NEHFAQIEG--LIDEIDFKLLVTRAEFE---ALNEDLF-----DRVGYPVEQALKSSAVPM--DVISQVILV 635 (1212)
Q Consensus 576 --------~~~~i~ie~--l~~~~d~~~~itR~efe---~l~~~l~-----~~i~~~i~~~L~~a~~~~--~~i~~ViLv 635 (1212)
-++++-+++ |-|+. .+++--+.|| .|++|.+ ..+.+++-++++.+.++. +--.+|+|.
T Consensus 224 ~e~e~kLalETTvLv~~YtLPDGR--vIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLS 301 (389)
T KOG0677|consen 224 LELEQKLALETTVLVESYTLPDGR--VIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLS 301 (389)
T ss_pred hhhhhHhhhhheeeeeeeecCCCc--EEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeec
Confidence 122333333 23332 3456666675 4666643 245566777777665432 224689999
Q ss_pred cCCcCCHHHHHHHHHHhC
Q psy18164 636 GAGTRVPKVQEKITKVVG 653 (1212)
Q Consensus 636 GGssriP~Vq~~l~~~fg 653 (1212)
||+|.-|.+-..|++.+.
T Consensus 302 GGstMYPGLPSRLEkElk 319 (389)
T KOG0677|consen 302 GGSTMYPGLPSRLEKELK 319 (389)
T ss_pred CCcccCCCCcHHHHHHHH
Confidence 999999999888876653
|
|
| >smart00842 FtsA Cell division protein FtsA | Back alignment and domain information |
|---|
Probab=89.91 E-value=0.61 Score=49.50 Aligned_cols=30 Identities=30% Similarity=0.160 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHcCCceEEEecchhHHHHH
Q psy18164 186 IERQSMLKAGELAGLKVLQLMNDYTAVALN 215 (1212)
Q Consensus 186 ~qr~~l~~Aa~~AGl~~~~li~EP~AAal~ 215 (1212)
...+.+.++++.||+++..++-+|-|++.+
T Consensus 157 ~~v~n~~~~v~~agl~v~~i~~~~~A~~~a 186 (187)
T smart00842 157 SAIQNLEKCVERAGLEVDGIVLEPLASAEA 186 (187)
T ss_pred HHHHHHHHHHHHcCCchhhEEehhhhhEec
Confidence 457789999999999999999999998753
|
FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931. |
| >COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.47 E-value=2.5 Score=51.55 Aligned_cols=93 Identities=15% Similarity=0.135 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccE--EEccCCCCCHHHHHHHHHHHHHcCCceEEEecchhHHHH-HhhhhcccCCCCC
Q psy18164 151 ELVAMLLHKAREYASVSAGQVINEA--VIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVAL-NYGIFKRKDFNET 227 (1212)
Q Consensus 151 ev~~~~L~~l~~~a~~~~~~~~~~~--VitVPa~f~~~qr~~l~~Aa~~AGl~~~~li~EP~AAal-~y~~~~~~~~~~~ 227 (1212)
+.+...+..|+..++...+..+.++ |=|-=..--.+.-.++.++-+..|++. .+|+.-+=|=+ +++..+....
T Consensus 52 eai~R~~~aL~~f~e~~~~~~~~~v~~vATsA~R~A~N~~eFl~rv~~~~G~~i-evIsGeeEArl~~lGv~~~~~~--- 127 (492)
T COG0248 52 EAIERALSALKRFAELLDGFGAEEVRVVATSALRDAPNGDEFLARVEKELGLPI-EVISGEEEARLIYLGVASTLPR--- 127 (492)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCEEEEehhHHHHcCCCHHHHHHHHHHHhCCce-EEeccHHHHHHHHHHHHhcCCC---
Confidence 4556666666666655545455442 222222222334557888999999976 67765544444 3444433321
Q ss_pred CCeEEEEEecCCceEEEEEEE
Q psy18164 228 NPVHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 228 ~~~~vlV~D~GggT~Dvsvv~ 248 (1212)
....+|+|+|||++.+++..
T Consensus 128 -~~~~lv~DIGGGStEl~~g~ 147 (492)
T COG0248 128 -KGDGLVIDIGGGSTELVLGD 147 (492)
T ss_pred -CCCEEEEEecCCeEEEEEec
Confidence 34789999999999999887
|
|
| >COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.28 E-value=3.7 Score=46.00 Aligned_cols=20 Identities=25% Similarity=0.346 Sum_probs=18.3
Q ss_pred CeEEEEEEcCCCceeEEEEE
Q psy18164 476 PVHVMFYDMGAWSTTVSIVS 495 (1212)
Q Consensus 476 ~~~vlv~D~Gggt~dvsvv~ 495 (1212)
...|+=+|+||||+..|++.
T Consensus 144 ~t~v~NlDIGGGTtN~slFD 163 (473)
T COG4819 144 LTRVLNLDIGGGTTNYSLFD 163 (473)
T ss_pred ceEEEEEeccCCccceeeec
Confidence 57899999999999999987
|
|
| >COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.84 E-value=1.5 Score=54.29 Aligned_cols=51 Identities=29% Similarity=0.338 Sum_probs=38.2
Q ss_pred CCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhc
Q psy18164 627 DVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 678 (1212)
Q Consensus 627 ~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls 678 (1212)
..++.|.++||++|.+...+++.+++|.++..... .|+.+.|+|+.++.-.
T Consensus 400 ~~~~~i~~~GGgars~~w~Qi~Ad~~g~~v~~~~~-~e~~a~g~A~~~~~~~ 450 (502)
T COG1070 400 KPPSRVRVVGGGARSPLWLQILADALGLPVVVPEV-EEAGALGGAALAAAAL 450 (502)
T ss_pred CCccEEEEECCcccCHHHHHHHHHHcCCeeEecCc-ccchHHHHHHHHHHHh
Confidence 34678999999999999999999999988875444 4555555555555443
|
|
| >PRK10854 exopolyphosphatase; Provisional | Back alignment and domain information |
|---|
Probab=88.74 E-value=4.8 Score=49.89 Aligned_cols=59 Identities=15% Similarity=0.218 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHcCCceEEEecchhHHHHHh-hhhcccCCCCCCCeEEEEEecCCceEEEEEEE
Q psy18164 185 QIERQSMLKAGELAGLKVLQLMNDYTAVALNY-GIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 185 ~~qr~~l~~Aa~~AGl~~~~li~EP~AAal~y-~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~ 248 (1212)
.+...++.++-...|+++ ++|+..+=|-+.| +...... . .+..+|+|+|||++.+++++
T Consensus 96 ~N~~~fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~~l~--~--~~~~lvvDIGGGStEl~~~~ 155 (513)
T PRK10854 96 LNATDFLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQP--E--KGRKLVIDIGGGSTELVIGE 155 (513)
T ss_pred cCHHHHHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhcccC--C--CCCeEEEEeCCCeEEEEEec
Confidence 344556667777789975 7888777776666 3333221 1 24689999999999999875
|
|
| >COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=88.50 E-value=5.4 Score=45.10 Aligned_cols=62 Identities=26% Similarity=0.276 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEE
Q psy18164 187 ERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 187 qr~~l~~Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~ 248 (1212)
......+|.+.|||...-+==|.-|.--+|..--..-........|+|+|+|+..+.++++.
T Consensus 150 ~v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~ 211 (354)
T COG4972 150 VVESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQ 211 (354)
T ss_pred hhHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEE
Confidence 34567899999999865443355555444442111111111223479999999999888875
|
|
| >KOG0797|consensus | Back alignment and domain information |
|---|
Probab=88.40 E-value=3.2 Score=49.12 Aligned_cols=92 Identities=17% Similarity=0.166 Sum_probs=63.8
Q ss_pred eeeHHHHHHHHHHHHHHHHHHhcCCcc-----ccEEEccCCCCCHHHHH-HHHHHHHHcCCceEEEecchhHHHHHhhhh
Q psy18164 146 LYHVEELVAMLLHKAREYASVSAGQVI-----NEAVIIVPGYFNQIERQ-SMLKAGELAGLKVLQLMNDYTAVALNYGIF 219 (1212)
Q Consensus 146 ~~s~~ev~~~~L~~l~~~a~~~~~~~~-----~~~VitVPa~f~~~qr~-~l~~Aa~~AGl~~~~li~EP~AAal~y~~~ 219 (1212)
-.|..++++.+-.-+.-.....+..++ -.+|+-||-.|.....+ .+.--....||..+.++.|..||.++.|+.
T Consensus 196 y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGls 275 (618)
T KOG0797|consen 196 YYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGLS 275 (618)
T ss_pred chhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCcc
Confidence 345555555433322222233444333 25899999999876644 555566888999999999999999876653
Q ss_pred cccCCCCCCCeEEEEEecCCceEEEEEEE
Q psy18164 220 KRKDFNETNPVHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 220 ~~~~~~~~~~~~vlV~D~GggT~Dvsvv~ 248 (1212)
.-.|||+|+-++.++.|+
T Consensus 276 -----------s~CVVdiGAQkTsIaCVE 293 (618)
T KOG0797|consen 276 -----------SACVVDIGAQKTSIACVE 293 (618)
T ss_pred -----------ceeEEEccCcceeEEEee
Confidence 358999999999998875
|
|
| >KOG0680|consensus | Back alignment and domain information |
|---|
Probab=88.19 E-value=45 Score=37.74 Aligned_cols=101 Identities=14% Similarity=0.096 Sum_probs=55.5
Q ss_pred cceEEEecCCCCCHHHHH-HHHHHHHHcCCCeeeeechhHHHHHhhc---ccccccCCCCCCeEEEEEEcCCCceeEE-E
Q psy18164 419 INEAVIIVPGYFNQIERQ-SMLKAGELAGLKVLQLMNDYTAVALNYG---IFKRKDFNETNPVHVMFYDMGAWSTTVS-I 493 (1212)
Q Consensus 419 i~~~VItVP~~f~~~qR~-al~~Aa~~AGl~~~~li~EptAaAl~y~---~~~~~~~~~~~~~~vlv~D~Gggt~dvs-v 493 (1212)
-..+|+|=|.+--++-.. ...--.+.-++. .+..-+.|+.+++- ..+..... ++....+|+|.|.+-|.+. +
T Consensus 93 ~~~ivlTep~~~~psi~~~t~eilFEey~fd--~v~kttaa~lva~~~~~~~ne~~tt-~~~~c~lVIDsGysfThIip~ 169 (400)
T KOG0680|consen 93 DHNIVLTEPCMTFPSIQEHTDEILFEEYQFD--AVLKTTAAVLVAFTKYVRNNEDSTT-TSSECCLVIDSGYSFTHIIPV 169 (400)
T ss_pred cceEEEecccccccchhhhHHHHHHHHhccc--eEeecCHHHhcchhhhccCCccccc-cccceEEEEeCCCceEEEehh
Confidence 346899988875544333 333333444554 34444445444443 22222112 2356899999999866543 3
Q ss_pred EEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHH
Q psy18164 494 VSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLG 538 (1212)
Q Consensus 494 v~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~ 538 (1212)
+. |....+... ...+||..++..|-+++.
T Consensus 170 v~---------g~~~~qaV~-------RiDvGGK~LTn~LKE~iS 198 (400)
T KOG0680|consen 170 VK---------GIPYYQAVK-------RIDVGGKALTNLLKETIS 198 (400)
T ss_pred hc---------CcchhhceE-------EeecchHHHHHHHHHHhh
Confidence 33 211111111 346999999999988775
|
|
| >smart00842 FtsA Cell division protein FtsA | Back alignment and domain information |
|---|
Probab=88.03 E-value=2.4 Score=45.01 Aligned_cols=29 Identities=31% Similarity=0.169 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHcCCCeeeeechhHHHHH
Q psy18164 433 IERQSMLKAGELAGLKVLQLMNDYTAVAL 461 (1212)
Q Consensus 433 ~qR~al~~Aa~~AGl~~~~li~EptAaAl 461 (1212)
...+.+..+++.|||++..++-+|-|++.
T Consensus 157 ~~v~n~~~~v~~agl~v~~i~~~~~A~~~ 185 (187)
T smart00842 157 SAIQNLEKCVERAGLEVDGIVLEPLASAE 185 (187)
T ss_pred HHHHHHHHHHHHcCCchhhEEehhhhhEe
Confidence 45778889999999999999999999874
|
FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931. |
| >COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.81 E-value=1.4 Score=47.60 Aligned_cols=73 Identities=19% Similarity=0.179 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHHHHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEE
Q psy18164 404 LHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYD 483 (1212)
Q Consensus 404 L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D 483 (1212)
+.+|.+..+...+.++ .|+++-..|... .++.+--. .||| +|....+.-.... +...+++|
T Consensus 76 Ve~Ii~~v~~Af~~pv--~~v~~~G~~~ss--Ea~~~~~~-------------vAAa-NW~Ata~~~~e~~-~dsci~VD 136 (330)
T COG1548 76 VEDIIDTVEKAFNCPV--YVVDVNGNFLSS--EALKNPRE-------------VAAA-NWVATARFLAEEI-KDSCILVD 136 (330)
T ss_pred HHHHHHHHHHhcCCce--EEEeccCcCcCh--hHhcCHHH-------------HHHh-hhHHHHHHHHHhc-CCceEEEe
Confidence 3455666666676665 788998888764 22221111 1121 2211111100111 56799999
Q ss_pred cCCCceeEEEEE
Q psy18164 484 MGAWSTTVSIVS 495 (1212)
Q Consensus 484 ~Gggt~dvsvv~ 495 (1212)
||+.|+|+-=+.
T Consensus 137 ~GSTTtDIIPi~ 148 (330)
T COG1548 137 MGSTTTDIIPIK 148 (330)
T ss_pred cCCcccceEeec
Confidence 999999976554
|
|
| >PF13941 MutL: MutL protein | Back alignment and domain information |
|---|
Probab=87.47 E-value=2.3 Score=51.11 Aligned_cols=43 Identities=33% Similarity=0.558 Sum_probs=29.7
Q ss_pred EEEEecCceeEEEEEEe--CCCCeEEecCCCCCccceEEEEEecCcEeecHH
Q psy18164 285 VMSVDLGSEWMKVAIVS--PGVPMEIALNKESKRKTPTLVAFHKGERTFGED 334 (1212)
Q Consensus 285 vvGID~Gtt~s~va~~~--~g~~~~iv~n~~~~r~~PS~V~f~~~~r~~G~~ 334 (1212)
++.+||||||+++..+. .+ ..+++ +.-..||.| - .+....|..
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~-~~~~i----g~a~apTTv-~-~~Dv~~G~~ 46 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDG-EPRLI----GQAEAPTTV-E-PGDVTIGLN 46 (457)
T ss_pred EEEEEeCCcceEEeEEeccCC-ccEEE----EEEeCCCCc-C-cccHHHHHH
Confidence 68899999999999998 55 34454 344567777 2 245555544
|
|
| >PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T | Back alignment and domain information |
|---|
Probab=87.01 E-value=0.47 Score=46.47 Aligned_cols=61 Identities=20% Similarity=0.123 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHHHHHcC---CceEE---------Eecch-hHHHHH
Q psy18164 151 ELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAG---LKVLQ---------LMNDY-TAVALN 215 (1212)
Q Consensus 151 ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~Aa~~AG---l~~~~---------li~EP-~AAal~ 215 (1212)
+-++.-|+...+.|+...+.++..+++++ .....+.+.++++.++ ++... ++..| -|+|++
T Consensus 46 ~~i~~~i~~a~~~AE~~~k~~i~~v~v~~----g~s~l~~i~~~~~~~~~~~v~v~~~~~~~~~~~~~~~p~~Asa~g 119 (120)
T PF14450_consen 46 EDISKAIKIAIEEAERLAKCEIGSVYVSI----GGSKLQNIEELIEKCGGMPVRVAGPNIVEGLPEIVLNPEYASAIG 119 (120)
T ss_dssp HHHHHHHT--HHHHHHH-HHHH--S--TT----GGGGSTTHHHHHHHHHTS-EEE--GGGSET-HHHHT-GGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCeeeEEEecC----chhHHHhHHHHHHHhCCCcEEEccccccCcchhhccCceeeEEEe
Confidence 34455666666777777777777888877 3344455677777766 66666 67788 777764
|
|
| >PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length | Back alignment and domain information |
|---|
Probab=84.80 E-value=14 Score=42.65 Aligned_cols=54 Identities=26% Similarity=0.354 Sum_probs=39.3
Q ss_pred CCccEEEEEcCCcCCHHHHHHHHHHhCC--c-ccCCCCc----hhHHHhhHHHHHHhhcCC
Q psy18164 627 DVISQVILVGAGTRVPKVQEKITKVVGV--E-LSKNLNT----DEAAALGAVYKAADLSTG 680 (1212)
Q Consensus 627 ~~i~~ViLvGGssriP~Vq~~l~~~fg~--~-i~~~~n~----deaVA~GAa~~aa~ls~~ 680 (1212)
.+.+.|+|.|-.+|+|-+.+.+.+.|+. . ....+.+ -..+|.|||+.|.-+.++
T Consensus 259 ~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~~l~~~~~~aKeaA~GaAiIA~glaGG 319 (343)
T PF07318_consen 259 PDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVRKLEGLARKAKEAAQGAAIIANGLAGG 319 (343)
T ss_pred CCCCEEEEeccccccHHHHHHHHHHHHhhcccceeecccccccchhhhhhHHHHhhhhhcc
Confidence 4678899999999999998888877752 1 1111222 244899999999888765
|
The function of this family is unknown. |
| >KOG0676|consensus | Back alignment and domain information |
|---|
Probab=84.33 E-value=3.8 Score=47.86 Aligned_cols=75 Identities=15% Similarity=0.091 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHhcC--CccccEEEccCCCCCHHHHHHHHHHH-HHcCCceEEEecchhHHHHHhhhhcccCCCCCCCe
Q psy18164 154 AMLLHKAREYASVSAG--QVINEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPV 230 (1212)
Q Consensus 154 ~~~L~~l~~~a~~~~~--~~~~~~VitVPa~f~~~qr~~l~~Aa-~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~ 230 (1212)
..+.+|+.. +.+. .....+++|-|..+...-|+.|.+.. +..+.+-+.+ ...|.+ |.....
T Consensus 82 e~iw~~if~---~~L~~~Pee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yv---a~qavl-ya~g~t--------- 145 (372)
T KOG0676|consen 82 EKIWHHLFY---SELLVAPEEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYV---AIQAVL-YASGRT--------- 145 (372)
T ss_pred HHHHHHHHH---HhhccCcccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHH---HHHHHH-HHcCCe---------
Confidence 556666651 2221 12246999999999999999888766 3334443322 223333 544332
Q ss_pred EEEEEecCCceEEE
Q psy18164 231 HVMFYDMGAWSTTV 244 (1212)
Q Consensus 231 ~vlV~D~GggT~Dv 244 (1212)
+=+|+|+|.|-+++
T Consensus 146 tG~VvD~G~gvt~~ 159 (372)
T KOG0676|consen 146 TGLVVDSGDGVTHV 159 (372)
T ss_pred eEEEEEcCCCceee
Confidence 45999999996643
|
|
| >KOG0681|consensus | Back alignment and domain information |
|---|
Probab=84.22 E-value=13 Score=44.60 Aligned_cols=126 Identities=16% Similarity=0.120 Sum_probs=69.6
Q ss_pred eeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHHH-HHcCCCeeeeechhHHHHHhhcccccccC
Q psy18164 393 LYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDF 471 (1212)
Q Consensus 393 ~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~Aa-~~AGl~~~~li~EptAaAl~y~~~~~~~~ 471 (1212)
.++--++...+|.|+-...--....-..-+++|=+..=...+|+.|.+-. +.-|+.-+.+=-+.- |..+++..
T Consensus 90 VvtNwel~E~ilDY~F~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDsl-----fS~~hN~~- 163 (645)
T KOG0681|consen 90 VVTNWELMEQILDYIFGKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSL-----FSFYHNYG- 163 (645)
T ss_pred ccccHHHHHHHHHHHHHhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhH-----HHHhhccC-
Confidence 34445666777777666432221121234777777666667787776654 444876554321111 11111111
Q ss_pred CCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHH
Q psy18164 472 NETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKK 540 (1212)
Q Consensus 472 ~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~ 540 (1212)
......-||+++|..+|.|-.|- .| .. ++..+...++||...-.-|.+.|..+
T Consensus 164 -~~~~~~~liis~g~~~T~vipvl--------dG------~~-il~~~kRiN~GG~qa~dYL~~Lmq~K 216 (645)
T KOG0681|consen 164 -KSSNKSGLIISMGHSATHVIPVL--------DG------RL-ILKDVKRINWGGYQAGDYLSRLMQLK 216 (645)
T ss_pred -cccCcceEEEecCCCcceeEEEe--------cC------ch-hhhcceeeccCcchHHHHHHHHHhcc
Confidence 11134689999999999876553 24 22 34445567899998765555555444
|
|
| >TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase) | Back alignment and domain information |
|---|
Probab=84.22 E-value=50 Score=37.99 Aligned_cols=93 Identities=20% Similarity=0.178 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHH--cCCccceEEEecCCCCCHHH------------HHHHHHHH-HHcCCCeeeeechhHHHH
Q psy18164 396 VEELVAMLLHKAREYASVS--AGQVINEAVIIVPGYFNQIE------------RQSMLKAG-ELAGLKVLQLMNDYTAVA 460 (1212)
Q Consensus 396 ~eel~a~~L~~lk~~a~~~--~~~~i~~~VItVP~~f~~~q------------R~al~~Aa-~~AGl~~~~li~EptAaA 460 (1212)
+++++..+...+.+..+.. ...++..+.|++|...+... .-.+.+.. +..|+++ .+.|+..|+|
T Consensus 33 ~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva~pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~pv-~v~NDa~~~a 111 (318)
T TIGR00744 33 PETIVDAIASAVDSFIQHIAKVGHEIVAIGIGAPGPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLPV-VVENDANAAA 111 (318)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccceEEEEEeccccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCCE-EEechHHHHH
Confidence 4555555555555544432 12356778888888664321 11233333 2347764 7999999999
Q ss_pred HhhcccccccCCCCCCeEEEEEEcCCCceeEEEE
Q psy18164 461 LNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIV 494 (1212)
Q Consensus 461 l~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv 494 (1212)
++-....... . .++++++.+|.|- -.+++
T Consensus 112 laE~~~g~~~---~-~~~~~~v~igtGi-G~giv 140 (318)
T TIGR00744 112 LGEYKKGAGK---G-ARDVICITLGTGL-GGGII 140 (318)
T ss_pred HHHHHhcccC---C-CCcEEEEEeCCcc-EEEEE
Confidence 8754433211 1 4678999999875 55555
|
This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution. |
| >PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ] | Back alignment and domain information |
|---|
Probab=84.05 E-value=1.4 Score=48.42 Aligned_cols=47 Identities=23% Similarity=0.103 Sum_probs=34.1
Q ss_pred HHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEE
Q psy18164 196 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 196 ~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~ 248 (1212)
+..|.++.--=-|+.+|.+........ ..-+.++||||||+|.|++.
T Consensus 106 ~~lgv~V~igGvEAemAi~GALTTPGt------~~PlaIlDmG~GSTDAsii~ 152 (332)
T PF08841_consen 106 EELGVPVEIGGVEAEMAILGALTTPGT------DKPLAILDMGGGSTDASIIN 152 (332)
T ss_dssp HHHTSEEEEECEHHHHHHHHHTTSTT--------SSEEEEEE-SSEEEEEEE-
T ss_pred HHHCCceEEccccHHHHHhcccCCCCC------CCCeEEEecCCCcccHHHhC
Confidence 455888766677999999877654433 23589999999999999985
|
This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C. |
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=82.40 E-value=1.1e+02 Score=42.68 Aligned_cols=49 Identities=12% Similarity=0.129 Sum_probs=35.2
Q ss_pred CCCccEEEEEcCC-cCCHHHHHHHHHHhC------CcccCCCCchhHHHhhHHHHH
Q psy18164 626 MDVISQVILVGAG-TRVPKVQEKITKVVG------VELSKNLNTDEAAALGAVYKA 674 (1212)
Q Consensus 626 ~~~i~~ViLvGGs-sriP~Vq~~l~~~fg------~~i~~~~n~deaVA~GAa~~a 674 (1212)
..+|+.|+++|+. ..-|..++.|..++. .+...--+....-|+||++..
T Consensus 1389 ~~~~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~fl~hegy~ga~Ga~~~~ 1444 (1452)
T PTZ00297 1389 VQGVPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHFLEHDGYLGALGCATLD 1444 (1452)
T ss_pred HcCCCEEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEEecCccccHHhhhhhcC
Confidence 3468899999995 458999999886652 344444566678889987654
|
|
| >COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.31 E-value=26 Score=39.60 Aligned_cols=71 Identities=17% Similarity=0.159 Sum_probs=36.8
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHcCCceEEEe---cchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEE
Q psy18164 175 AVIIVPGYFNQIERQSMLKAGELAGLKVLQLM---NDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 175 ~VitVPa~f~~~qr~~l~~Aa~~AGl~~~~li---~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~ 248 (1212)
++||=-..=..+.|..+..--..||==++.-- -|..-|.-..+. ..+.+.....|+=+|+||||+..|++.
T Consensus 90 vIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA---~t~Seqr~t~v~NlDIGGGTtN~slFD 163 (473)
T COG4819 90 VIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGA---QTLSEQRLTRVLNLDIGGGTTNYSLFD 163 (473)
T ss_pred EEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccc---cchhhhhceEEEEEeccCCccceeeec
Confidence 45554444455566655544444543222211 133322221111 112223345799999999999999864
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1212 | ||||
| 2v7z_A | 543 | Crystal Structure Of The 70-Kda Heat Shock Cognate | 6e-52 | ||
| 3c7n_B | 554 | Structure Of The Hsp110:hsc70 Nucleotide Exchange C | 1e-51 | ||
| 1yuw_A | 554 | Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214 | 3e-51 | ||
| 1ba1_A | 386 | Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi | 8e-51 | ||
| 1kax_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71m | 1e-50 | ||
| 1bup_A | 386 | T13s Mutant Of Bovine 70 Kilodalton Heat Shock Prot | 2e-50 | ||
| 1ngc_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 2e-50 | ||
| 1ngd_A | 386 | Structural Basis Of The 70-kilodalton Heat Shock Co | 3e-50 | ||
| 1kay_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71a | 4e-50 | ||
| 1hpm_A | 386 | How Potassium Affects The Activity Of The Molecular | 4e-50 | ||
| 1ba0_A | 386 | Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi | 4e-50 | ||
| 2qw9_B | 394 | Crystal Structure Of Bovine Hsc70 (1-394aa)in The A | 5e-50 | ||
| 1hx1_A | 400 | Crystal Structure Of A Bag Domain In Complex With T | 5e-50 | ||
| 1kaz_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71e | 6e-50 | ||
| 3cqx_A | 386 | Chaperone Complex Length = 386 | 7e-50 | ||
| 1ngb_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 7e-50 | ||
| 1nga_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 7e-50 | ||
| 3fzf_A | 381 | Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP | 8e-50 | ||
| 1ats_A | 386 | Threonine 204 Of The Chaperone Protein Hsc70 Influe | 8e-50 | ||
| 2bup_A | 381 | T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 | 9e-50 | ||
| 2qwn_A | 394 | Crystal Structure Of Disulfide-Bond-Crosslinked Com | 1e-49 | ||
| 1atr_A | 386 | Threonine 204 Of The Chaperone Protein Hsc70 Influe | 1e-49 | ||
| 1ngf_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 2e-49 | ||
| 1ngh_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 2e-49 | ||
| 3gdq_A | 408 | Crystal Structure Of The Human 70kda Heat Shock Pro | 2e-49 | ||
| 1ngg_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 3e-49 | ||
| 1nge_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 3e-49 | ||
| 1qqo_A | 378 | E175s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 4e-49 | ||
| 3c7n_A | 668 | Structure Of The Hsp110:hsc70 Nucleotide Exchange C | 1e-48 | ||
| 2qxl_A | 658 | Crystal Structure Analysis Of Sse1, A Yeast Hsp110 | 2e-48 | ||
| 3jxu_A | 409 | Crystal Structure Of The Human 70kda Heat Shock Pro | 2e-48 | ||
| 2e8a_A | 391 | Crystal Structure Of The Human Hsp70 Atpase Domain | 2e-48 | ||
| 2e88_A | 391 | Crystal Structure Of The Human Hsp70 Atpase Domain | 2e-48 | ||
| 1qqn_A | 378 | D206s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 2e-48 | ||
| 3a8y_A | 392 | Crystal Structure Of The Complex Between The Bag5 B | 2e-48 | ||
| 3d2f_A | 675 | Crystal Structure Of A Complex Of Sse1p And Hsp70 L | 3e-48 | ||
| 1hjo_A | 380 | Atpase Domain Of Human Heat Shock 70kda Protein 1 L | 3e-48 | ||
| 3d2f_B | 382 | Crystal Structure Of A Complex Of Sse1p And Hsp70 L | 3e-48 | ||
| 1s3x_A | 382 | The Crystal Structure Of The Human Hsp70 Atpase Dom | 5e-48 | ||
| 3d2e_B | 382 | Crystal Structure Of A Complex Of Sse1p And Hsp70, | 1e-47 | ||
| 3fe1_A | 403 | Crystal Structure Of The Human 70kda Heat Shock Pro | 2e-47 | ||
| 3i33_A | 404 | Crystal Structure Of The Human 70kda Heat Shock Pro | 5e-47 | ||
| 1qqm_A | 378 | D199s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 5e-47 | ||
| 3d2e_A | 675 | Crystal Structure Of A Complex Of Sse1p And Hsp70, | 6e-47 | ||
| 3kvg_A | 400 | Crystal Structure Of The N-Terminal Domain Of Hsp70 | 1e-46 | ||
| 3iuc_A | 408 | Crystal Structure Of The Human 70kda Heat Shock Pro | 2e-46 | ||
| 3ldl_A | 384 | Crystal Structure Of Human Grp78 (70kda Heat Shock | 2e-46 | ||
| 4fsv_A | 387 | Crystal Structure Of A Heat Shock 70kda Protein 2 ( | 4e-46 | ||
| 3qfp_A | 390 | Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE D | 4e-46 | ||
| 3qfu_A | 394 | Crystal Structure Of Yeast Hsp70 (BipKAR2) COMPLEXE | 5e-46 | ||
| 3gl1_A | 387 | Crystal Structure Of Atpase Domain Of Ssb1 Chaperon | 8e-46 | ||
| 2kho_A | 605 | Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAP | 3e-38 | ||
| 4b9q_A | 605 | Open Conformation Of Atp-Bound Hsp70 Homolog Dnak L | 6e-37 | ||
| 1dkg_D | 383 | Crystal Structure Of The Nucleotide Exchange Factor | 4e-36 | ||
| 2v7y_A | 509 | Crystal Structure Of The Molecular Chaperone Dnak F | 6e-34 | ||
| 4gni_A | 409 | Structure Of The Ssz1 Atpase Bound To Atp And Magne | 1e-23 | ||
| 1xqs_C | 191 | Crystal Structure Of The Hspbp1 Core Domain Complex | 4e-19 |
| >pdb|2V7Z|A Chain A, Crystal Structure Of The 70-Kda Heat Shock Cognate Protein From Rattus Norvegicus In Post-Atp Hydrolysis State Length = 543 | Back alignment and structure |
|
| >pdb|3C7N|B Chain B, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 554 | Back alignment and structure |
|
| >pdb|1YUW|A Chain A, Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214A MUTANT Length = 554 | Back alignment and structure |
|
| >pdb|1BA1|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal Mutant With Cys 17 Replaced By Lys Length = 386 | Back alignment and structure |
|
| >pdb|1KAX|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71m Mutant Length = 381 | Back alignment and structure |
|
| >pdb|1BUP|A Chain A, T13s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 386 | Back alignment and structure |
|
| >pdb|1NGC|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGD|A Chain A, Structural Basis Of The 70-kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1KAY|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71a Mutant Length = 381 | Back alignment and structure |
|
| >pdb|1HPM|A Chain A, How Potassium Affects The Activity Of The Molecular Chaperone Hsc70. Ii. Potassium Binds Specifically In The Atpase Active Site Length = 386 | Back alignment and structure |
|
| >pdb|1BA0|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal 1nge 3 Length = 386 | Back alignment and structure |
|
| >pdb|2QW9|B Chain B, Crystal Structure Of Bovine Hsc70 (1-394aa)in The Apo State Length = 394 | Back alignment and structure |
|
| >pdb|1HX1|A Chain A, Crystal Structure Of A Bag Domain In Complex With The Hsc70 Atpase Domain Length = 400 | Back alignment and structure |
|
| >pdb|1KAZ|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71e Mutant Length = 381 | Back alignment and structure |
|
| >pdb|3CQX|A Chain A, Chaperone Complex Length = 386 | Back alignment and structure |
|
| >pdb|1NGB|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGA|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|3FZF|A Chain A, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP Length = 381 | Back alignment and structure |
|
| >pdb|1ATS|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386 | Back alignment and structure |
|
| >pdb|2BUP|A Chain A, T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 Length = 381 | Back alignment and structure |
|
| >pdb|2QWN|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin (810-910aa)d876c In The AdpPi State Length = 394 | Back alignment and structure |
|
| >pdb|1ATR|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386 | Back alignment and structure |
|
| >pdb|1NGF|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGH|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|3GDQ|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1-Like Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 408 | Back alignment and structure |
|
| >pdb|1NGG|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGE|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1QQO|A Chain A, E175s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|3C7N|A Chain A, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 668 | Back alignment and structure |
|
| >pdb|2QXL|A Chain A, Crystal Structure Analysis Of Sse1, A Yeast Hsp110 Length = 658 | Back alignment and structure |
|
| >pdb|3JXU|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1a (Hsp70-1) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 409 | Back alignment and structure |
|
| >pdb|2E8A|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In Complex With Amp-Pnp Length = 391 | Back alignment and structure |
|
| >pdb|2E88|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In The Apo Form Length = 391 | Back alignment and structure |
|
| >pdb|1QQN|A Chain A, D206s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|3A8Y|A Chain A, Crystal Structure Of The Complex Between The Bag5 Bd5 And Hsp70 Nbd Length = 392 | Back alignment and structure |
|
| >pdb|3D2F|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 675 | Back alignment and structure |
|
| >pdb|1HJO|A Chain A, Atpase Domain Of Human Heat Shock 70kda Protein 1 Length = 380 | Back alignment and structure |
|
| >pdb|3D2F|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 382 | Back alignment and structure |
|
| >pdb|1S3X|A Chain A, The Crystal Structure Of The Human Hsp70 Atpase Domain Length = 382 | Back alignment and structure |
|
| >pdb|3D2E|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 382 | Back alignment and structure |
|
| >pdb|3FE1|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 6 (Hsp70b') Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 403 | Back alignment and structure |
|
| >pdb|3I33|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 2 (Hsp70-2) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 404 | Back alignment and structure |
|
| >pdb|1QQM|A Chain A, D199s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|3D2E|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 675 | Back alignment and structure |
|
| >pdb|3KVG|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hsp70 (Cgd2_20) From Cryptosporidium Parvum In Complex With Amppnp Length = 400 | Back alignment and structure |
|
| >pdb|3IUC|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 5 (BipGRP78) ATPASE DOMAIN IN COMPLEX WITH ADP Length = 408 | Back alignment and structure |
|
| >pdb|3LDL|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein 5 BIP) Atpase Domain In Complex With Atp Length = 384 | Back alignment and structure |
|
| >pdb|4FSV|A Chain A, Crystal Structure Of A Heat Shock 70kda Protein 2 (Hspa2) From Homo Sapiens At 1.80 A Resolution Length = 387 | Back alignment and structure |
|
| >pdb|3QFP|A Chain A, Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE DOMAIN Length = 390 | Back alignment and structure |
|
| >pdb|3GL1|A Chain A, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A Member Of The Hsp70 Family, From Saccharomyces Cerevisiae Length = 387 | Back alignment and structure |
|
| >pdb|2KHO|A Chain A, Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAPERONE (1-605) Complexed With Adp And Substrate Length = 605 | Back alignment and structure |
|
| >pdb|4B9Q|A Chain A, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak Length = 605 | Back alignment and structure |
|
| >pdb|1DKG|D Chain D, Crystal Structure Of The Nucleotide Exchange Factor Grpe Bound To The Atpase Domain Of The Molecular Chaperone Dnak Length = 383 | Back alignment and structure |
|
| >pdb|2V7Y|A Chain A, Crystal Structure Of The Molecular Chaperone Dnak From Geobacillus Kaustophilus Hta426 In Post-Atp Hydrolysis State Length = 509 | Back alignment and structure |
|
| >pdb|4GNI|A Chain A, Structure Of The Ssz1 Atpase Bound To Atp And Magnesium Length = 409 | Back alignment and structure |
|
| >pdb|1XQS|C Chain C, Crystal Structure Of The Hspbp1 Core Domain Complexed With The Fragment Of Hsp70 Atpase Domain Length = 191 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1212 | |||
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 5e-99 | |
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 8e-34 | |
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 1e-12 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 5e-63 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 5e-24 | |
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 1e-61 | |
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 1e-23 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 5e-61 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 4e-23 | |
| 1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 2e-50 | |
| 1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 6e-24 | |
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 2e-48 | |
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 2e-23 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 1e-43 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 2e-19 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-14 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-08 | |
| 2p32_A | 120 | Heat shock 70 kDa protein A; three-helix bundle, c | 6e-09 | |
| 3lof_A | 113 | Heat shock 70 kDa protein 1; structural genomics, | 7e-09 | |
| 1ud0_A | 113 | HSC70, 70 kDa heat-shock-like protein; chaperone; | 1e-08 | |
| 3h1q_A | 272 | Ethanolamine utilization protein EUTJ; ethanolamin | 2e-04 |
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Length = 675 | Back alignment and structure |
|---|
Score = 329 bits (845), Expect = 5e-99
Identities = 160/711 (22%), Positives = 303/711 (42%), Gaps = 63/711 (8%)
Query: 288 VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSY 347
+DLG+ +A+ +I +N+ S R TP++V F R GE + T N+
Sbjct: 7 LDLGNNNSVLAVARNRGI-DIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTSNIKNTV 65
Query: 348 GYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTN---DNELYHVEELVAMLL 404
++G P + F + + + + + ++ +L AM +
Sbjct: 66 ANLKRIIGLDYHHPDFEQESKHFTSK--LVELDDKKTGAEVRFAGEKHVFSATQLAAMFI 123
Query: 405 HKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYG 464
K ++ I + I VP ++ + +R ++ A +AGL ++++ND TA ++YG
Sbjct: 124 DKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYG 183
Query: 465 IFKR-KDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 523
IFK E P V F D+G S T SI+++ ++G ++ VLG D+
Sbjct: 184 IFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAF------KKGQLK------VLGTACDKH 231
Query: 524 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIE 583
GG + + + + +F K D+ ENP+A ++ A +LK VLSAN +E
Sbjct: 232 FGGRDFDLAITEHFADEFK--TKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVE 289
Query: 584 GLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPK 643
+++++D ++R E E L + L +RV PV +AL + + + + V ++G TR+P
Sbjct: 290 SVMNDVDVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPT 349
Query: 644 VQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVEFERE 703
+++ I++ G LS LN DEA A GA + A S +V+ F +DI Y + ++++
Sbjct: 350 LKQSISEAFGKPLSTTLNQDEAIAKGAAFICAIHSPTLRVRPFKFEDIHPYSVSYSWDKQ 409
Query: 704 SESGD-TKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQIAMLGTK 762
E D ++ +++P K++T N+ GDF+ SY + Q+ +
Sbjct: 410 VEDEDHMEVFPA-----GSSFPSTKLITLNRT-GDFSMAASYT------DITQLPPNTPE 457
Query: 763 QISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSK 822
QI+ ++++GV E +S +K D SG+ ++ + + + +++ K
Sbjct: 458 QIANWEITGVQL------PEGQDSVPVKLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVK 511
Query: 823 LGNTLTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEE---SVKNAT 879
+ LT + D + +NE +++ N+ + K V TE ++ + EE +++
Sbjct: 512 -KDDLTIVAHTFGLDAKK--LNELIEKENEMLAQ-DKLVAETEDRKNTLEEYIYTLRGKL 567
Query: 880 QTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKLDSLNQIEHAKVRKEKALN 939
+ A S +E + L + K+ L K
Sbjct: 568 EEEYAPF----------ASDAE----KTKLQGM-LNKAEEWLYDEGFDSIKAKYIAK-YE 611
Query: 940 SLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEAD 990
L SL + + +E A + + AE
Sbjct: 612 ELASLGNIIRGRYLAKEEEKKQAIRSKQEASQMAAMAEKLAAQRKAEAEKK 662
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Length = 675 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 8e-34
Identities = 52/212 (24%), Positives = 94/212 (44%), Gaps = 7/212 (3%)
Query: 41 VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSY 100
+DLG+ +A+ +I +N+ S R TP++V F R GE + T N+
Sbjct: 7 LDLGNNNSVLAVARNRGI-DIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTSNIKNTV 65
Query: 101 GYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTN---DNELYHVEELVAMLL 157
++G P + F + + + + + ++ +L AM +
Sbjct: 66 ANLKRIIGLDYHHPDFEQESKHFTSK--LVELDDKKTGAEVRFAGEKHVFSATQLAAMFI 123
Query: 158 HKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYG 217
K ++ I + I VP ++ + +R ++ A +AGL ++++ND TA ++YG
Sbjct: 124 DKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYG 183
Query: 218 IFKR-KDFNETNPVHVMFYDMGAWSTTVSIVS 248
IFK E P V F D+G S T SI++
Sbjct: 184 IFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMA 215
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Length = 675 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 1e-12
Identities = 32/149 (21%), Positives = 64/149 (42%), Gaps = 9/149 (6%)
Query: 874 SVKNATQTPDADKKPKIVTVKE---PISASETRYGVSTLNEKQVEKSLSKLDSLNQIEHA 930
+++ A D + TVK+ I A L+ K++ + + K + + +
Sbjct: 491 TIEEAYTIEDIEAGSDTKTVKKDDLTIVAHTFG-----LDAKKLNELIEKENEMLAQDKL 545
Query: 931 KVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEAD 990
E N+LE ++ + KLE EEY+ A+ E + +++ WL ++G+++
Sbjct: 546 VAETEDRKNTLEEYIYTLRGKLE-EEYAPFASDAEKTKLQGMLNKAEEWLYDEGFDSIKA 604
Query: 991 VLENKLNEINSLVVPIWERHREHQERPEA 1019
K E+ SL I R+ +E +
Sbjct: 605 KYIAKYEELASLGNIIRGRYLAKEEEKKQ 633
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ... Length = 404 | Back alignment and structure |
|---|
Score = 219 bits (561), Expect = 5e-63
Identities = 125/377 (33%), Positives = 195/377 (51%), Gaps = 25/377 (6%)
Query: 307 EIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLD---LLGKSIDSPVV 363
EI N + R TP+ VAF ER G+ A+ P+N+ D L+G+ + V
Sbjct: 46 EIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNT---IFDAKRLIGRKFEDATV 102
Query: 364 QLFKSRFPYYDIVADEERGTIVFKTNDNE-LYHVEELVAMLLHKAREYASVSAGQVINEA 422
Q +P+ +V++ + + + + EE+ +M+L K +E A G ++ A
Sbjct: 103 QSDMKHWPF-RVVSEGGKPKVQVEYKGETKTFFPEEISSMVLTKMKEIAEAYLGGKVHSA 161
Query: 423 VIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFY 482
VI VP YFN +RQ+ AG + GL VL+++N+ TA A+ YG+ K+ +V+ +
Sbjct: 162 VITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAAIAYGLDKKGCAGGEK--NVLIF 219
Query: 483 DMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFN 542
D+G + VSI+ T E G E V D LGG + R+ L ++F
Sbjct: 220 DLGGGTFDVSIL------TIEDGIFE------VKSTAGDTHLGGEDFDNRMVSHLAEEFK 267
Query: 543 EMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEA 602
+K KD+ N RAV +L R K LS++ + +I+ L + +DF +TRA FE
Sbjct: 268 --RKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGVDFYTSITRARFEE 325
Query: 603 LNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKV-VGVELSKNLN 661
LN DLF PVE+AL+ + + I +++LVG TR+PK+Q+ + G EL+K++N
Sbjct: 326 LNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSIN 385
Query: 662 TDEAAALGAVYKAADLS 678
DEA A GA +AA L
Sbjct: 386 PDEAVAYGAAVQAAILI 402
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ... Length = 404 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 5e-24
Identities = 59/193 (30%), Positives = 100/193 (51%), Gaps = 10/193 (5%)
Query: 60 EIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLD---LLGKSIDSPVV 116
EI N + R TP+ VAF ER G+ A+ P+N+ D L+G+ + V
Sbjct: 46 EIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNT---IFDAKRLIGRKFEDATV 102
Query: 117 QLFKSRFPYYDIVADEERGTIVFKTNDNE-LYHVEELVAMLLHKAREYASVSAGQVINEA 175
Q +P+ +V++ + + + + EE+ +M+L K +E A G ++ A
Sbjct: 103 QSDMKHWPF-RVVSEGGKPKVQVEYKGETKTFFPEEISSMVLTKMKEIAEAYLGGKVHSA 161
Query: 176 VIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFY 235
VI VP YFN +RQ+ AG + GL VL+++N+ TA A+ YG+ K+ +V+ +
Sbjct: 162 VITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAAIAYGLDKKGCAGGEK--NVLIF 219
Query: 236 DMGAWSTTVSIVS 248
D+G + VSI++
Sbjct: 220 DLGGGTFDVSILT 232
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Length = 554 | Back alignment and structure |
|---|
Score = 220 bits (562), Expect = 1e-61
Identities = 159/466 (34%), Positives = 237/466 (50%), Gaps = 47/466 (10%)
Query: 280 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 339
S G AV +DLG+ + V + G EI N + R TP+ VAF ER G+ A+
Sbjct: 2 SKGPAV-GIDLGTTYSCVGVFQHGKV-EIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 340 TRFPSNSYGYFLD---LLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNE-LYH 395
P+N+ D L+G+ D VVQ +P+ +V D R + + ++
Sbjct: 60 AMNPTNT---VFDAKRLIGRRFDDAVVQSDMKHWPF-MVVNDAGRPKVQVEYKGETKSFY 115
Query: 396 VEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMND 455
EE+ +M+L K +E A G+ + AV+ VP YFN +RQ+ AG +AGL VL+++N+
Sbjct: 116 PEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINE 175
Query: 456 YTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSV 515
TA A+ YG+ K+ E N V+ +D+G + VSI+ T G E V
Sbjct: 176 PTAAAIAYGLDKKVG-AERN---VLIFDLGGGTFDVSIL------TIAAGIFE------V 219
Query: 516 LGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSAN 575
D LGG + R+ + +F +K KD+ EN RAV +L R K LS++
Sbjct: 220 KSTAGDTHLGGEDFDNRMVNHFIAEFK--RKHKKDISENKRAVRRLRTACERAKRTLSSS 277
Query: 576 NEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILV 635
+ +I+ L + IDF +TRA FE LN DLF PVE+AL+ + + I ++LV
Sbjct: 278 TQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLV 337
Query: 636 GAGTRVPKVQEKITKV-VGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLY 694
G TR+PK+Q+ + G EL+K++N DEA A GA +AA LS G K + +D++L
Sbjct: 338 GGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILS-GDKSEN--VQDLLLL 394
Query: 695 ---PIQVEFERESESGD--TKIIKRMLFGPSNTY-PQKKILTFNKY 734
P+ + E +G T +IKR NT P K+ TF Y
Sbjct: 395 DVTPLSLGIET---AGGVMTVLIKR------NTTIPTKQTQTFTTY 431
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Length = 554 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 1e-23
Identities = 74/220 (33%), Positives = 116/220 (52%), Gaps = 14/220 (6%)
Query: 33 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 92
S G AV +DLG+ + V + G EI N + R TP+ VAF ER G+ A+
Sbjct: 2 SKGPAV-GIDLGTTYSCVGVFQHGKV-EIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 93 TRFPSNSYGYFLD---LLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNE-LYH 148
P+N+ D L+G+ D VVQ +P+ +V D R + + ++
Sbjct: 60 AMNPTNT---VFDAKRLIGRRFDDAVVQSDMKHWPF-MVVNDAGRPKVQVEYKGETKSFY 115
Query: 149 VEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMND 208
EE+ +M+L K +E A G+ + AV+ VP YFN +RQ+ AG +AGL VL+++N+
Sbjct: 116 PEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINE 175
Query: 209 YTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248
TA A+ YG+ K+ E N V+ +D+G + VSI++
Sbjct: 176 PTAAAIAYGLDKKVG-AERN---VLIFDLGGGTFDVSILT 211
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Length = 383 | Back alignment and structure |
|---|
Score = 182 bits (464), Expect = 2e-50
Identities = 122/413 (29%), Positives = 201/413 (48%), Gaps = 52/413 (12%)
Query: 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDA--QIIGTR 341
++ +DLG+ VAI+ P + N E R TP+++A+ + GE G+ A Q +
Sbjct: 4 IIGIDLGTTNSCVAIMDGTTPRVLE-NAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTN- 61
Query: 342 FPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVA 401
P N+ L+G+ VQ S P+ I+A + G + + ++ A
Sbjct: 62 -PQNTLFAIKRLIGRRFQDEEVQRDVSIMPF-KIIAADN-GDAWVEVKGQK-MAPPQISA 117
Query: 402 MLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVAL 461
+L K ++ A G+ + EAVI VP YFN +RQ+ AG +AGL+V +++N+ TA AL
Sbjct: 118 EVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAAL 177
Query: 462 NYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYD 521
YG+ K N T + YD+G + +SI+ ++ + E VL D
Sbjct: 178 AYGLDK-GTGNRT----IAVYDLGGGTFDISII--EIDEVDGEKTFE------VLATNGD 224
Query: 522 RTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNE---- 577
LGG + RL ++L ++F K D+ +P A+ +L + A + K LS+ +
Sbjct: 225 THLGGEDFDSRLINYLVEEFK--KDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVN 282
Query: 578 ------------HFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVP 625
H ++ K+ TRA+ E+L EDL +R ++ AL+ + +
Sbjct: 283 LPYITADATGPKH----------MNIKV--TRAKLESLVEDLVNRSIELLKVALQDAGLS 330
Query: 626 MDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 678
+ I VILVG TR+P VQ+K+ + G E K++N DEA A+GA + L+
Sbjct: 331 VSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLT 383
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Length = 383 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 6e-24
Identities = 66/212 (31%), Positives = 107/212 (50%), Gaps = 14/212 (6%)
Query: 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDA--QIIGTR 94
++ +DLG+ VAI+ P + N E R TP+++A+ + GE G+ A Q +
Sbjct: 4 IIGIDLGTTNSCVAIMDGTTPRVLE-NAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTN- 61
Query: 95 FPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVA 154
P N+ L+G+ VQ S P+ I+A + G + + ++ A
Sbjct: 62 -PQNTLFAIKRLIGRRFQDEEVQRDVSIMPF-KIIAADN-GDAWVEVKGQK-MAPPQISA 117
Query: 155 MLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVAL 214
+L K ++ A G+ + EAVI VP YFN +RQ+ AG +AGL+V +++N+ TA AL
Sbjct: 118 EVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAAL 177
Query: 215 NYGIFKRKDFNETNPVHVMFYDMGAWSTTVSI 246
YG+ K N T + YD+G + +SI
Sbjct: 178 AYGLDK-GTGNRT----IAVYDLGGGTFDISI 204
|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Length = 605 | Back alignment and structure |
|---|
Score = 182 bits (463), Expect = 2e-48
Identities = 124/413 (30%), Positives = 201/413 (48%), Gaps = 52/413 (12%)
Query: 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDA--QIIGTR 341
++ +DLG+ VAI+ P + N E R TP+++A+ + GE G+ A Q +
Sbjct: 4 IIGIDLGTTNSCVAIMDGTTPRVLE-NAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTN- 61
Query: 342 FPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVA 401
P N+ L+G+ VQ S P+ I AD G + + ++ A
Sbjct: 62 -PQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADN--GDAWVEVKGQK-MAPPQISA 117
Query: 402 MLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVAL 461
+L K ++ A G+ + EAVI VP YFN +RQ+ AG +AGL+V +++N+ TA AL
Sbjct: 118 EVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAAL 177
Query: 462 NYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYD 521
YG+ K N T + YD+G + +SI+ ++ + E VL D
Sbjct: 178 AYGLDK-GTGNRT----IAVYDLGGGTFDISII--EIDEVDGEKTFE------VLATNGD 224
Query: 522 RTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNE---- 577
LGG + RL ++L ++F K D+ +P A+ +L + A + K LS+ +
Sbjct: 225 THLGGEDFDSRLINYLVEEFK--KDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVN 282
Query: 578 ------------HFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVP 625
H ++ K+ TRA+ E+L EDL +R P++ AL+ + +
Sbjct: 283 LPYITADATGPKH----------MNIKV--TRAKLESLVEDLVNRSIEPLKVALQDAGLS 330
Query: 626 MDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 678
+ I VILVG TR+P VQ+K+ + G E K++N DEA A+GA + L+
Sbjct: 331 VSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLT 383
|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Length = 605 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 2e-23
Identities = 67/212 (31%), Positives = 106/212 (50%), Gaps = 14/212 (6%)
Query: 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDA--QIIGTR 94
++ +DLG+ VAI+ P + N E R TP+++A+ + GE G+ A Q +
Sbjct: 4 IIGIDLGTTNSCVAIMDGTTPRVLE-NAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTN- 61
Query: 95 FPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVA 154
P N+ L+G+ VQ S P+ I AD G + + ++ A
Sbjct: 62 -PQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADN--GDAWVEVKGQK-MAPPQISA 117
Query: 155 MLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVAL 214
+L K ++ A G+ + EAVI VP YFN +RQ+ AG +AGL+V +++N+ TA AL
Sbjct: 118 EVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAAL 177
Query: 215 NYGIFKRKDFNETNPVHVMFYDMGAWSTTVSI 246
YG+ K N T + YD+G + +SI
Sbjct: 178 AYGLDK-GTGNRT----IAVYDLGGGTFDISI 204
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Length = 509 | Back alignment and structure |
|---|
Score = 165 bits (421), Expect = 1e-43
Identities = 121/417 (29%), Positives = 187/417 (44%), Gaps = 91/417 (21%)
Query: 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQ-------- 336
++ +DLG+ VA++ G I N E R TP++VAF GER GE A+
Sbjct: 4 IIGIDLGTTNSCVAVLEGGEVKVIP-NPEGNRTTPSVVAFKNGERLVGEVAKRQAITNPN 62
Query: 337 -------IIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTN 389
+GT Y +++ GK
Sbjct: 63 TIISIKRHMGTD-------YKVEIEGKQ-------------------------------- 83
Query: 390 DNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKV 449
Y +E+ A++L + YA G+ + AVI VP YFN +RQ+ AG +AGL+V
Sbjct: 84 ----YTPQEISAIILQYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEV 139
Query: 450 LQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVET 509
+++N+ TA AL YG+ K +D +T ++ YD+G + VSI+ G E
Sbjct: 140 ERIINEPTAAALAYGLDKEED--QT----ILVYDLGGGTFDVSILELG------DGVFE- 186
Query: 510 HPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLK 569
V D LGG + + D+L +F ++ D+ ++ A+ +L A + K
Sbjct: 187 -----VKATAGDNHLGGDDFDQVIIDYLVNQFK--QEHGIDLSKDKMALQRLKDAAEKAK 239
Query: 570 NVLSANNEHFAQI--------EGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKS 621
LS + QI E ++ L TRA+FE L+ L +R PV QAL+
Sbjct: 240 KELSGVTQ--TQISLPFISANENGPLHLEMTL--TRAKFEELSAHLVERTMGPVRQALQD 295
Query: 622 SAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 678
+ + I +VILVG TR+P VQE I + +G E K +N DE A+GA + ++
Sbjct: 296 AGLTPADIDKVILVGGSTRIPAVQEAIKRELGKEPHKGVNPDEVVAIGAAIQGGVIA 352
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Length = 509 | Back alignment and structure |
|---|
Score = 92.3 bits (230), Expect = 2e-19
Identities = 65/224 (29%), Positives = 100/224 (44%), Gaps = 65/224 (29%)
Query: 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQ-------- 89
++ +DLG+ VA++ G I N E R TP++VAF GER GE A+
Sbjct: 4 IIGIDLGTTNSCVAVLEGGEVKVIP-NPEGNRTTPSVVAFKNGERLVGEVAKRQAITNPN 62
Query: 90 -------IIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTN 142
+GT Y +++ GK
Sbjct: 63 TIISIKRHMGTD-------YKVEIEGKQ-------------------------------- 83
Query: 143 DNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKV 202
Y +E+ A++L + YA G+ + AVI VP YFN +RQ+ AG +AGL+V
Sbjct: 84 ----YTPQEISAIILQYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEV 139
Query: 203 LQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSI 246
+++N+ TA AL YG+ K +D +T ++ YD+G + VSI
Sbjct: 140 ERIINEPTAAALAYGLDKEED--QT----ILVYDLGGGTFDVSI 177
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 78.4 bits (192), Expect = 1e-14
Identities = 101/636 (15%), Positives = 191/636 (30%), Gaps = 182/636 (28%)
Query: 528 EMQIRLRDFLGKKFNEMKKT--TKDVFENPRAVAK------LFKEAGRLKNV-------L 572
E Q + +D L + KDV + P+++ + + L
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL 72
Query: 573 SANNEHFAQIEGLIDEIDFKLLVTRAEFE----ALNEDLF----DRVG--------YPVE 616
S E + + I++K L++ + E ++ ++ DR+ Y V
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 617 -----QALKSSAVPMDVISQVILVG-AGT----------RVPKVQEK-------ITKVVG 653
L+ + + + V++ G G+ KVQ K + +
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN--LK 190
Query: 654 VELSKNLNTDEA--AALGAVYKAADLSTGFKVKKFITKDIVLYPIQVEFERESESGDTKI 711
N N+ E L + D + ++ I++ +
Sbjct: 191 -----NCNSPETVLEMLQKLLYQID-------PNWTSRSDHSSNIKLRIH------SIQA 232
Query: 712 IKRMLFGPSNTYPQK-KILTFNKYVGDFNFNVSYASEIEHLNPE-QIAMLGTKQISKFDV 769
R L S Y +L NV A N +I +L T+ D
Sbjct: 233 ELRRLL-KSKPYENCLLVL-------L---NVQNAKAWNAFNLSCKI-LLTTRFKQVTDF 280
Query: 770 SGVSEAFGKHNEENAESKGIKAHFAMDES-GILSL-VNIELVVEKQEAAE-SPLSKLGNT 826
+S A H + S DE +L ++ +E +P
Sbjct: 281 --LSAATTTHISLDHHSMT----LTPDEVKSLLLKYLDCRPQDLPREVLTTNPR------ 328
Query: 827 LTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADK 886
S+ + S D + K+VN + E S+ P +
Sbjct: 329 RLSIIAESIRDGLATW-------------DNWKHVN-CDKLTTIIESSLNV--LEPAEYR 372
Query: 887 K--------PKIVTVKEPI--------SASETRYGVSTLN-----EKQVEKSLSKLDSLN 925
K P + + S+ V+ L+ EKQ ++S + S+
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
Query: 926 QIEHAKVRKEKAL--------NSLESLLFDAKSKLELEEYS--------SVAAPNESKTI 969
K+ E AL N ++ D L++Y E T+
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 970 VDKI--DEITNWLEE----DG--WNAEADVLENKLNEINSLVVPIWERH-REHQERPEAL 1020
+ D +LE+ D WNA +L N L ++ ++ + ++ + E L
Sbjct: 493 FRMVFLD--FRFLEQKIRHDSTAWNASGSIL-NTLQQLK-----FYKPYICDNDPKYERL 544
Query: 1021 KS--LNNALNVSVTFYNS----IKNLSLNTNETEDL 1050
+ L+ + S + ++L E E +
Sbjct: 545 VNAILDFLPKIEENLICSKYTDLLRIALM-AEDEAI 579
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.1 bits (142), Expect = 1e-08
Identities = 80/510 (15%), Positives = 152/510 (29%), Gaps = 167/510 (32%)
Query: 737 DFNFNVSYASEIEHLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMD 796
DF E ++ + +++ + FD V + K E I
Sbjct: 8 DFETG-----EHQYQYKDILSVFEDAFVDNFDCKDVQD-MPKSILSKEEIDHIIMS-KDA 60
Query: 797 ESGILSLVNIELVVEKQEAAESPLSKLGNTLTS----LFSRSKTDENEKPINEA--VDEG 850
SG L L ++ KQE + L L S KT++ + + +++
Sbjct: 61 VSGTLRL--FWTLLSKQEEMVQKF--VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 851 NKTAEEPSK----NVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYG- 905
++ + NV+ + + ++ A + K V + G
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLK-----LRQALLE---LRPAKNVLI----------DGV 158
Query: 906 ---------VSTLNEKQVEKSLSKLDSLNQIEHAKVRK----EKALNSLESLLFDAKSKL 952
+ +V+ + +I ++ E L L+ LL+
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMD-----FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 953 ELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLVV--PIWERH 1010
+ + S I +I I L +L++K E N L+V +
Sbjct: 214 T-------SRSDHSSNIKLRIHSIQAELR--------RLLKSKPYE-NCLLVLLNVQN-- 255
Query: 1011 REHQERPEALKSLN---------------NALNVSVTFYNSIKNLSLNTNETEDLNLFS- 1054
+A + N + L+ + T + S+ + S+ E +L
Sbjct: 256 ------AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 1055 --DIELKSLD---------TLSMVW-----FRVCWGFFFLLFKQDKGLDTLI-------- 1090
D + L LS++ W + DK L T+I
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD-NWKHVNCDK-LTTIIESSLNVLE 367
Query: 1091 -NETK----------------------VWKEKSEKEQ----NQLKKSDPIVLTIRSIVEK 1123
E + +W + + + N+L K S+VEK
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK--------YSLVEK 419
Query: 1124 IRALEREVR----YLENKSKL-WMASLNKK 1148
+ E + YLE K KL +L++
Sbjct: 420 -QPKESTISIPSIYLELKVKLENEYALHRS 448
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 4e-08
Identities = 88/572 (15%), Positives = 169/572 (29%), Gaps = 195/572 (34%)
Query: 89 QIIGTRFPSNSYGYFLDLLGKSIDSPVVQLF-----KSRFPY-YDIVADEERG----TIV 138
II ++ + L S +VQ F + + + + E+R T +
Sbjct: 53 HIIMSKDAVSGTLRLFWTL-LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111
Query: 139 FKT------NDNEL---YHV--EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIE 187
+ NDN++ Y+V + K R+ ++ +++ G
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPY----LKLRQALL----ELRPAKNVLIDG------ 157
Query: 188 RQSMLKAGELAGLK-VLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFY-DMGAWSTTVS 245
+L +G K + L V L+Y + + DF +F+ ++ ++ +
Sbjct: 158 ---VLGSG-----KTWVAL-----DVCLSYKVQCKMDFK-------IFWLNLKNCNSPET 197
Query: 246 IV------SYQVVKT--------------------------KERGMKISLVTL------- 266
++ YQ+ K + + L+ L
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257
Query: 267 --------CSSVVLLLT------------------LFEHSYGIAVM-SVDLGSEWMKVAI 299
C +LL T L HS + L +++
Sbjct: 258 AWNAFNLSCK--ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 300 ------VSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDA--QIIGTRF----PSNSY 347
V P +++ ES R K D II + P+
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWK---HVNCDKLTTIIESSLNVLEPAEYR 372
Query: 348 GYFLDL--LGKSIDSP--VVQLFKSRFPYYD---IVADEERGTIVFKTNDNELY------ 394
F L S P ++ L D +V + ++V K
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
Query: 395 -----HVEELVAMLLHKA--REYASVSAGQVINEAVIIVPGYF-NQIERQSMLKAGELAG 446
+E A LH++ Y + + YF + I LK E
Sbjct: 433 LELKVKLENEYA--LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH--LKNIEHP- 487
Query: 447 LKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS-YQVVKTKERG 505
+ M + V L++ ++K + +D AW+ + SI++ Q +K +
Sbjct: 488 ----ERMTLFRMVFLDFRFLEQK----------IRHDSTAWNASGSILNTLQQLKFYKPY 533
Query: 506 FVETHPQVSVLGVGYDRTLGGLEMQIRLRDFL 537
+ P+ Y+R + + DFL
Sbjct: 534 ICDNDPK-------YERLVNAIL------DFL 552
|
| >2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans} Length = 120 | Back alignment and structure |
|---|
Score = 54.2 bits (130), Expect = 6e-09
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 928 EHAKVRKE-KALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWN 986
H+ + LES F+ K +E E+ +P + K I DK DEI WL+ +
Sbjct: 9 HHSSGLVPRGSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDSNQ-T 67
Query: 987 AEADVLENKLNEINSLVVPI 1006
AE + E++ ++ L PI
Sbjct: 68 AEKEEFEHQQKDLEGLANPI 87
|
| >3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A Length = 113 | Back alignment and structure |
|---|
Score = 53.8 bits (129), Expect = 7e-09
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 931 KVR-KEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEA 989
+ A N+LES F+ KS +E E + + K ++DK E+ +WL+ + AE
Sbjct: 3 AAAERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANT-LAEK 61
Query: 990 DVLENKLNEINSLVVPI 1006
D E+K E+ + PI
Sbjct: 62 DEFEHKRKELEQVCNPI 78
|
| >1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1 Length = 113 | Back alignment and structure |
|---|
Score = 53.4 bits (128), Expect = 1e-08
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 937 ALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKL 996
+ LES F+ K+ +E E+ + + I+DK +EI +WL+++ AE + E++
Sbjct: 5 GSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQT-AEKEEFEHQQ 63
Query: 997 NEINSLVVPI 1006
E+ + PI
Sbjct: 64 KELEKVCNPI 73
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Length = 272 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 39/275 (14%), Positives = 85/275 (30%), Gaps = 81/275 (29%)
Query: 397 EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDY 456
++V L K G + +A +P ++ AGL+++ L+++
Sbjct: 74 IQIVRELKAKVERLL----GSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEP 129
Query: 457 TAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSY-QVVKTKERGFVETHPQVSV 515
A A GI + + D+G +T ++++ ++ T
Sbjct: 130 VAAARALGI----NDG-------IVVDIGGGTTGIAVIEKGKITATF------------- 165
Query: 516 LGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSAN 575
D GG + + L F+EA +K S +
Sbjct: 166 -----DEPTGGTHLSLVLAGSYKIP---------------------FEEAETIKKDFSRH 199
Query: 576 NEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILV 635
E + + +++ V++ +K+ D V +V
Sbjct: 200 REIMRVV----------------------RPVIEKMALIVKEVIKN----YDQTLPVYVV 233
Query: 636 GAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGA 670
G + E+ ++ +G E+ ++ LG
Sbjct: 234 GGTAYLTGFSEEFSRFLGKEVQVPIHPLLVTPLGI 268
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1212 | |||
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 100.0 | |
| 4b9q_A | 605 | Chaperone protein DNAK; HET: ATP; 2.40A {Escherich | 100.0 | |
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 100.0 | |
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 100.0 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 100.0 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 100.0 | |
| 4gni_A | 409 | Putative heat shock protein; HSP70-type ATPase, AT | 100.0 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 100.0 | |
| 1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 100.0 | |
| 1jce_A | 344 | ROD shape-determining protein MREB; MBL, actin, HS | 100.0 | |
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 100.0 | |
| 4b9q_A | 605 | Chaperone protein DNAK; HET: ATP; 2.40A {Escherich | 100.0 | |
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 100.0 | |
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 100.0 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 100.0 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 99.97 | |
| 4gni_A | 409 | Putative heat shock protein; HSP70-type ATPase, AT | 99.97 | |
| 1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 99.97 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 99.96 | |
| 4e81_A | 219 | Chaperone protein DNAK; chaperone; 1.90A {Escheric | 99.95 | |
| 1u00_A | 227 | HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A | 99.95 | |
| 2fsj_A | 346 | Hypothetical protein TA0583; actin homologs, archa | 99.92 | |
| 2ych_A | 377 | Competence protein PILM; cell cycle, type IV pilus | 99.91 | |
| 3h1q_A | 272 | Ethanolamine utilization protein EUTJ; ethanolamin | 99.91 | |
| 1k8k_A | 418 | ARP3, actin-like protein 3, actin-2; beta-propelle | 99.88 | |
| 2fxu_A | 375 | Alpha-actin-1, actin, alpha skeletal muscle; actin | 99.88 | |
| 4a2a_A | 419 | Cell division protein FTSA, putative; cell cycle, | 99.88 | |
| 3n8e_A | 182 | Stress-70 protein, mitochondrial; beta-sandwich, h | 99.84 | |
| 2zgy_A | 320 | Plasmid segregation protein PARM; plasmid partitio | 99.8 | |
| 1jce_A | 344 | ROD shape-determining protein MREB; MBL, actin, HS | 99.78 | |
| 3h0x_A | 152 | 78 kDa glucose-regulated protein homolog; structur | 99.72 | |
| 3dob_A | 152 | Heat shock 70 kDa protein F44E5.5; structural geno | 99.7 | |
| 3dqg_A | 151 | Heat shock 70 kDa protein F; structural genomics, | 99.68 | |
| 1k8k_B | 394 | ARP2, actin-like protein 2; beta-propeller, struct | 99.67 | |
| 4ehu_A | 276 | Activator of 2-hydroxyisocaproyl-COA dehydratase; | 99.66 | |
| 2op6_A | 152 | Heat shock 70 kDa protein D; HSP70/peptide-binding | 99.65 | |
| 3js6_A | 355 | Uncharacterized PARM protein; partition, segregati | 99.58 | |
| 2fsj_A | 346 | Hypothetical protein TA0583; actin homologs, archa | 99.43 | |
| 4apw_A | 329 | ALP12; actin-like protein; 19.70A {Clostridium tet | 99.37 | |
| 1k8k_A | 418 | ARP3, actin-like protein 3, actin-2; beta-propelle | 99.25 | |
| 1q5l_A | 135 | Chaperone protein DNAK; HSP70, chaperone, heat sho | 99.24 | |
| 3lof_A | 113 | Heat shock 70 kDa protein 1; structural genomics, | 99.21 | |
| 2fxu_A | 375 | Alpha-actin-1, actin, alpha skeletal muscle; actin | 99.21 | |
| 3qb0_A | 498 | Actin-related protein 4; actin fold, ATP binding, | 99.2 | |
| 2ych_A | 377 | Competence protein PILM; cell cycle, type IV pilus | 99.16 | |
| 3dwl_A | 427 | Actin-related protein 3; propellor, actin-binding, | 99.15 | |
| 3h1q_A | 272 | Ethanolamine utilization protein EUTJ; ethanolamin | 99.02 | |
| 4fo0_A | 593 | Actin-related protein 8; chromatin remodeling, nuc | 98.96 | |
| 2p32_A | 120 | Heat shock 70 kDa protein A; three-helix bundle, c | 98.91 | |
| 2zgy_A | 320 | Plasmid segregation protein PARM; plasmid partitio | 98.86 | |
| 1ud0_A | 113 | HSC70, 70 kDa heat-shock-like protein; chaperone; | 98.82 | |
| 1k8k_B | 394 | ARP2, actin-like protein 2; beta-propeller, struct | 98.77 | |
| 2d0o_A | 610 | DIOL dehydratase-reactivating factor large subunit | 98.7 | |
| 1nbw_A | 607 | Glycerol dehydratase reactivase alpha subunit; mol | 98.69 | |
| 4a2a_A | 419 | Cell division protein FTSA, putative; cell cycle, | 98.59 | |
| 3js6_A | 355 | Uncharacterized PARM protein; partition, segregati | 98.38 | |
| 3qb0_A | 498 | Actin-related protein 4; actin fold, ATP binding, | 98.35 | |
| 1hux_A | 270 | Activator of (R)-2-hydroxyglutaryl-COA dehydratase | 98.28 | |
| 4ehu_A | 276 | Activator of 2-hydroxyisocaproyl-COA dehydratase; | 97.93 | |
| 3dwl_A | 427 | Actin-related protein 3; propellor, actin-binding, | 97.86 | |
| 4apw_A | 329 | ALP12; actin-like protein; 19.70A {Clostridium tet | 97.79 | |
| 4fo0_A | 593 | Actin-related protein 8; chromatin remodeling, nuc | 97.6 | |
| 4am6_A | 655 | Actin-like protein ARP8; nuclear protein, chromati | 97.29 | |
| 4am6_A | 655 | Actin-like protein ARP8; nuclear protein, chromati | 96.02 | |
| 2i7n_A | 360 | Pantothenate kinase 1; PANK, transferase; HET: ACO | 95.86 | |
| 2ews_A | 287 | Pantothenate kinase; PANK, structural genomics, st | 95.75 | |
| 2ivn_A | 330 | O-sialoglycoprotein endopeptidase; UP1 keops compl | 95.28 | |
| 3l0q_A | 554 | Xylulose kinase; xlylulose kinase, SGX, PSI, struc | 94.75 | |
| 3hz6_A | 511 | Xylulokinase; xylulose, structural genomic, chromo | 94.53 | |
| 4bc3_A | 538 | Xylulose kinase; transferase, glucuronate xyluloki | 94.51 | |
| 1t6c_A | 315 | Exopolyphosphatase; alpha/beta protein, actin-like | 94.3 | |
| 3ll3_A | 504 | Gluconate kinase; xylulose kinase, nysgx, ATP, ADP | 94.24 | |
| 2d0o_A | 610 | DIOL dehydratase-reactivating factor large subunit | 94.15 | |
| 2zf5_O | 497 | Glycerol kinase; hyperthermophilic archaeon, ATP-b | 94.09 | |
| 2itm_A | 484 | Xylulose kinase, xylulokinase; ATPase, FGGY kinase | 94.07 | |
| 3vov_A | 302 | Glucokinase, hexokinase; ROK, sugar kinase, transf | 93.91 | |
| 2e2o_A | 299 | Hexokinase; acetate and sugar kinases, HSP70, acti | 93.88 | |
| 3vgl_A | 321 | Glucokinase; ROK family, transferase; HET: BGC ANP | 93.84 | |
| 3i8b_A | 515 | Xylulose kinase; strain ATCC 15703 / DSM 20083, 11 | 93.78 | |
| 4db3_A | 327 | Glcnac kinase, N-acetyl-D-glucosamine kinase; stru | 93.77 | |
| 3ezw_A | 526 | Glycerol kinase; glycerol metabolism, allosteric r | 93.66 | |
| 1nbw_A | 607 | Glycerol dehydratase reactivase alpha subunit; mol | 93.24 | |
| 3g25_A | 501 | Glycerol kinase; IDP00743, ATP-binding, glycerol m | 93.22 | |
| 3h3n_X | 506 | Glycerol kinase; ATP-binding, glycerol metabolism, | 93.05 | |
| 4e1j_A | 520 | Glycerol kinase; structural genomics, PSI-biology, | 92.98 | |
| 3jvp_A | 572 | Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, su | 92.82 | |
| 2p3r_A | 510 | Glycerol kinase; glycerol metabolism, allosteric r | 92.79 | |
| 3ifr_A | 508 | Carbohydrate kinase, FGGY; xylulose kinase, SGX, s | 92.79 | |
| 4htl_A | 297 | Beta-glucoside kinase; structural genomics, sugar | 92.74 | |
| 2dpn_A | 495 | Glycerol kinase; thermus thermophilus HB8, structu | 92.48 | |
| 3r8e_A | 321 | Hypothetical sugar kinase; ribonuclease H-like mot | 92.35 | |
| 2d4w_A | 504 | Glycerol kinase; alpha and beta protein, ribonucle | 91.87 | |
| 3cer_A | 343 | Possible exopolyphosphatase-like protein; NESG, BL | 91.8 | |
| 2w40_A | 503 | Glycerol kinase, putative; closed conformation, ma | 91.22 | |
| 2uyt_A | 489 | Rhamnulokinase; rhamnose degradation, IN-LINE phos | 91.07 | |
| 1t6c_A | 315 | Exopolyphosphatase; alpha/beta protein, actin-like | 90.37 | |
| 3lof_A | 113 | Heat shock 70 kDa protein 1; structural genomics, | 89.52 | |
| 2ch5_A | 347 | NAGK protein; transferase, N-acetylglucosamine, gl | 87.79 | |
| 3mdq_A | 315 | Exopolyphosphatase; structural genomics, joint cen | 84.91 | |
| 3h6e_A | 482 | Carbohydrate kinase, FGGY; novosphingobium aromati | 84.62 | |
| 3bex_A | 249 | Type III pantothenate kinase; actin-like fold, ATP | 84.55 | |
| 4e81_A | 219 | Chaperone protein DNAK; chaperone; 1.90A {Escheric | 83.62 | |
| 3mdq_A | 315 | Exopolyphosphatase; structural genomics, joint cen | 81.75 | |
| 3eno_A | 334 | Putative O-sialoglycoprotein endopeptidase; hydrol | 80.72 |
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-99 Score=942.77 Aligned_cols=649 Identities=25% Similarity=0.429 Sum_probs=556.8
Q ss_pred ceEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEecCcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCHH
Q psy18164 283 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 362 (1212)
Q Consensus 283 ~~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~~ 362 (1212)
|++||||||||||+||++.+| +++++.|..|+|++||+|+|.+++++||..|..++.++|.++++++|||||+.++++.
T Consensus 2 m~~iGIDlGTtns~va~~~~g-~~~ii~n~~g~r~tPS~Vaf~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~ 80 (675)
T 3d2f_A 2 STPFGLDLGNNNSVLAVARNR-GIDIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTSNIKNTVANLKRIIGLDYHHPD 80 (675)
T ss_dssp CCCEEEECCSSEEEEEEEETT-EEEEECCTTSCSSEECCEEECSSSEEETHHHHHHHTTCGGGEECCHHHHTTCBTTCTT
T ss_pred CcEEEEEcCCCcEEEEEEECC-eeEEEECCCCCcccceEEEECCCcEEecHHHHHhhhhChHhHHHHHHHHhCCCCCcHH
Confidence 568999999999999999998 7889999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCceeeecCCCcceEEEEc-CCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHH
Q psy18164 363 VQLFKSRFPYYDIVADEERGTIVFKT-NDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 441 (1212)
Q Consensus 363 v~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~A 441 (1212)
++.+.+++||..+...++...+.+.. +++..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++|
T Consensus 81 v~~~~~~~p~~v~~~~~g~~~~~~~~~g~~~~~speei~a~~L~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 160 (675)
T 3d2f_A 81 FEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADA 160 (675)
T ss_dssp HHHHHTTCCSEEEECTTSBEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHCSCCCEEEEEECTTCCHHHHHHHHHH
T ss_pred HHHHHhhCCeeEEEcCCCceEEEEEeCCCCceEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHH
Confidence 99999999997665433332233332 33468999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCeeeeechhHHHHHhhcccccccCCC--CCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEe
Q psy18164 442 GELAGLKVLQLMNDYTAVALNYGIFKRKDFNE--TNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVG 519 (1212)
Q Consensus 442 a~~AGl~~~~li~EptAaAl~y~~~~~~~~~~--~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~ 519 (1212)
|++|||++++||+||+|||++|++.+.. +.. ..+.++||||+||||||+||+++. .+.++|++++
T Consensus 161 a~~AGl~~~~li~EP~AAAlaygl~~~~-~~~~~~~~~~vlV~DlGGGT~Dvsv~~~~------------~g~~~V~a~~ 227 (675)
T 3d2f_A 161 ARIAGLNPVRIVNDVTAAGVSYGIFKTD-LPEGEEKPRIVAFVDIGHSSYTCSIMAFK------------KGQLKVLGTA 227 (675)
T ss_dssp HHHTTCEEEEEEEHHHHHHHHHHHHCSC-CCCSSSCCEEEEEEEECSSCEEEEEEEEE------------TTEEEEEEEE
T ss_pred HHHcCCceEEEEcchHHHHHHHhhhccc-cccccCCCcEEEEEEcCCCcEEEEEEEec------------CCeEEEEEEc
Confidence 9999999999999999999999986532 211 127899999999999999999986 3478999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccCcceEEEEeHHH
Q psy18164 520 YDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAE 599 (1212)
Q Consensus 520 ~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~~d~~~~itR~e 599 (1212)
++..+||++||.+|++|+.++|.. +++.++..+++++.||+.+||++|+.||.+.++.+.|++++++.++.++|||++
T Consensus 228 gd~~lGG~d~D~~l~~~l~~~f~~--~~~~~~~~~~~a~~rL~~~aE~aK~~Ls~~~~~~i~i~~~~~g~~~~~~itr~~ 305 (675)
T 3d2f_A 228 CDKHFGGRDFDLAITEHFADEFKT--KYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLSREE 305 (675)
T ss_dssp EETTCSHHHHHHHHHHHHHHHHHH--HTSCCGGGCHHHHHHHHHHHHHHHHHHHHCSEEEEEETTSSSSCCEEEEEEHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHH--HhCCCCCCCHHHHHHHHHHHHHHHHhcCcCCceEEEEeeeccCceEEEEEeHHH
Confidence 999999999999999999999988 455688889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcC
Q psy18164 600 FEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLST 679 (1212)
Q Consensus 600 fe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~ 679 (1212)
|+++|+|+++++..+|+++|+.++++..+|+.|+||||+||+|+|++.|++.||.++..++||++|||+|||++|+.+++
T Consensus 306 fe~l~~~l~~~i~~~i~~~L~~a~l~~~~I~~VvLvGGssriP~v~~~l~~~fg~~~~~~~nPdeaVA~GAa~~a~~ls~ 385 (675)
T 3d2f_A 306 LEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAFGKPLSTTLNQDEAIAKGAAFICAIHSP 385 (675)
T ss_dssp HHHHTHHHHTTTTHHHHHHHHHHTCCGGGCCEEEEESGGGGSHHHHHHHHHHHTSCEECCSCTTTHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChhhCcEEEEECCCccChHHHHHHHHhcCCCccccCCcchHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred CcccceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccCceEEEEEeccCcccCChhhhhcc
Q psy18164 680 GFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQIAML 759 (1212)
Q Consensus 680 ~fkv~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~~~i~i~~g~~~~~~~~~~~~~~ 759 (1212)
.|+++++.+.|++||+|||++.+... + ..+.+||++|+++|++++.+|++. .++.+.++|+.+.. ++.+
T Consensus 386 ~~~v~~~~l~Dv~p~slgi~~~~~~~-~---~~~~~li~rnt~iP~~k~~~f~~~-~~~~~~~~~~ge~~-~~~~----- 454 (675)
T 3d2f_A 386 TLRVRPFKFEDIHPYSVSYSWDKQVE-D---EDHMEVFPAGSSFPSTKLITLNRT-GDFSMAASYTDITQ-LPPN----- 454 (675)
T ss_dssp SCCCCCCEEEEEECSCEEEEECCTTC-S---CSEEEEECTTEEESEEEEEEEEES-SCEEEEEEESCGGG-SCTT-----
T ss_pred CCcccceEEEeeeecceEeeecCCCC-C---cceEEEEcCCCCCCcccceeeeec-CCceEEEEEcCCcc-cccc-----
Confidence 99999999999999999999973211 1 127799999999999999999987 67889987741433 3321
Q ss_pred CceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccccCCCCCCC
Q psy18164 760 GTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKTDEN 839 (1212)
Q Consensus 760 ~~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~~~~~~~~ 839 (1212)
.+..|++|.|.|+++++++. .++|+|+|++|.||+|+|++++++++... +
T Consensus 455 ~n~~lg~f~l~gi~~~~~g~------~~~i~v~f~id~~Gil~V~a~~~~~~~~~--~---------------------- 504 (675)
T 3d2f_A 455 TPEQIANWEITGVQLPEGQD------SVPVKLKLRCDPSGLHTIEEAYTIEDIEA--G---------------------- 504 (675)
T ss_dssp CCSEEEEEEEECCCCCSSCS------CEEEEEEEEECTTSCEEEEEEEEECC----------------------------
T ss_pred cCceeeEEEecCcCCCCCCC------cceEEEEEEEcCCCcEEEEEEEEeecccc--c----------------------
Confidence 35678899999999875443 35899999999999999999976532100 0
Q ss_pred CCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHHHHHHHHH
Q psy18164 840 EKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLS 919 (1212)
Q Consensus 840 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~eel~~~~~ 919 (1212)
+.|....+..|+++.. ..+||+++++++++
T Consensus 505 -----------------------------------------------~~~~t~~~~~i~i~~~---~~~ls~~ei~~~~~ 534 (675)
T 3d2f_A 505 -----------------------------------------------SDTKTVKKDDLTIVAH---TFGLDAKKLNELIE 534 (675)
T ss_dssp -------------------------------------------------CCCCEEEECEEEEE---CSSCCHHHHHHHHH
T ss_pred -----------------------------------------------ccccCcceeeEEEecC---CCCCCHHHHHHHHH
Confidence 0000111222444322 23799999999999
Q ss_pred HHHhHhHHHHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHH
Q psy18164 920 KLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEI 999 (1212)
Q Consensus 920 ~l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~~~Kl~eL 999 (1212)
++.+|..+|+.++++.+++|+||+|+|++|++|+ ++|..++++++|++|...|+++++|||++++++++++|++|+++|
T Consensus 535 ~~~~~~~~D~~~~~~~~~~n~le~~i~~~~~~l~-~~~~~~~~~~~~~~~~~~l~~~~~wl~~~~~~~~~~~~~~~~~~l 613 (675)
T 3d2f_A 535 KENEMLAQDKLVAETEDRKNTLEEYIYTLRGKLE-EEYAPFASDAEKTKLQGMLNKAEEWLYDEGFDSIKAKYIAKYEEL 613 (675)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTTGGGSCHHHHHHHHHHHHHHHHHTTTGGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999997 468999999999999999999999999888899999999999999
Q ss_pred HHhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhc
Q psy18164 1000 NSLVVPIWERHREHQERPEALKSLNNALNVSVTFYNSIKN 1039 (1212)
Q Consensus 1000 ~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~l~~~~~ 1039 (1212)
+++++||..|++|++.||.+++.|++.|++++++++.+..
T Consensus 614 ~~~~~~i~~r~~e~~~rp~~~~~~~~~~~~~~~~~~~~~~ 653 (675)
T 3d2f_A 614 ASLGNIIRGRYLAKEEEKKQAIRSKQEASQMAAMAEKLAA 653 (675)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999754
|
| >4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-89 Score=851.53 Aligned_cols=594 Identities=26% Similarity=0.398 Sum_probs=531.0
Q ss_pred eEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEe-cCcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCHH
Q psy18164 284 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 362 (1212)
Q Consensus 284 ~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~-~~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~~ 362 (1212)
.|||||||||||+||++.+| .++++.|..|+|++||+|+|. ++++++|..|..++.++|.++++++|||||+.++++.
T Consensus 3 ~viGIDlGTT~S~Va~~~~g-~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~ 81 (605)
T 4b9q_A 3 KIIGIDLGTTNSCVAIMDGT-TPRVLENAEGDRTTPSIIAYTQDGCTLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEE 81 (605)
T ss_dssp CEEEEECCSSEEEEEEEETT-EEEECCCTTSCSSEECCEEECTTSCEEESHHHHHTTTTCGGGEECCGGGTTTCBTTSHH
T ss_pred cEEEEEcCCCcEEEEEEECC-EEEEEECCCCCcccceEEEEeCCCcEEecHHHHHHHHhCCCcEehhhHHhhCCCCCCHH
Confidence 48999999999999999988 678999999999999999996 5689999999999999999999999999999999999
Q ss_pred HHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHHH
Q psy18164 363 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 442 (1212)
Q Consensus 363 v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~Aa 442 (1212)
++.+.+++||..+... .+.+.+.+++ ..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||
T Consensus 82 v~~~~~~~p~~~~~~~--~g~~~~~~~~-~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qr~a~~~Aa 158 (605)
T 4b9q_A 82 VQRDVSIMPFKIIAAD--NGDAWVEVKG-QKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAG 158 (605)
T ss_dssp HHHHHTTCSSEEEECT--TSBEEEEETT-EEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHH
T ss_pred HHHHhhcCCeEEEEcC--CCceEEEECC-EEECHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 9999999999766544 3445566654 689999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCC
Q psy18164 443 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 522 (1212)
Q Consensus 443 ~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~ 522 (1212)
++|||+++++|+||+|||++|+..... . +.++||||+||||||+|++++.... ..+.+++++++++.
T Consensus 159 ~~AGl~v~~li~EP~AAAlaygl~~~~----~-~~~vlV~DlGGGT~Dvsi~~~~~~~--------~~~~~evla~~gd~ 225 (605)
T 4b9q_A 159 RIAGLEVKRIINEPTAAALAYGLDKGT----G-NRTIAVYDLGGGAFDISIIEIDEVD--------GEKTFEVLATNGDT 225 (605)
T ss_dssp HHTTCEEEEEEEHHHHHHHHHHTTSCC----S-SEEEEEEEECSSCEEEEEEEEEESS--------SCEEEEEEEEEEET
T ss_pred HHcCCceEEEeCcHHHHHHHhhhhccC----C-CCEEEEEECCCCeEEEEEEEEecCC--------CCceEEEEEecCCC
Confidence 999999999999999999999986643 2 6899999999999999999986211 13589999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccC----cceEEEEeHH
Q psy18164 523 TLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDE----IDFKLLVTRA 598 (1212)
Q Consensus 523 ~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~----~d~~~~itR~ 598 (1212)
.+||.+||.+|++|+.++|+. +.+.++..+++++.+|+.+||++|+.||.+.++.+.++.+..+ .++.++|||+
T Consensus 226 ~lGG~d~D~~l~~~l~~~f~~--~~~~~~~~~~~~~~~L~~~aE~~K~~Ls~~~~~~i~~~~~~~~~~g~~~~~~~itr~ 303 (605)
T 4b9q_A 226 HLGGEDFDSRLINYLVEEFKK--DQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRA 303 (605)
T ss_dssp TCSHHHHHHHHHHHHHHHHHH--HTCCCGGGCHHHHHHHHHHHHHHHHHTTTCSEEEEEEEEEEECSSSEEEEEEEEEHH
T ss_pred CcChHHHHHHHHHHHHHHHhh--hcCCCcccCHHHHHHHHHHHHHHHHhcCcCCCeEEEEeeeccCCCCCeeEEEEEeHH
Confidence 999999999999999999998 4566888899999999999999999999999999999887654 6889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhc
Q psy18164 599 EFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 678 (1212)
Q Consensus 599 efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls 678 (1212)
+|+++|+|+++++..+|+++|+++++...+|+.|+||||+||+|+||+.|+++||.++..+.|||+|||+|||++|+.++
T Consensus 304 ~~e~l~~~~~~~i~~~v~~~L~~a~~~~~~i~~VvLvGG~sriP~v~~~l~~~fg~~~~~~~nPdeaVA~GAai~a~~l~ 383 (605)
T 4b9q_A 304 KLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLT 383 (605)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHTTCCGGGCSEEEEESGGGGSHHHHHHHHHHHTSCCCSSSCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEeCCccCchHHHHHHHHHhccCcCCCcChhHHHHHhHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccCc---eEEEEEeccCcccCChhh
Q psy18164 679 TGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQ 755 (1212)
Q Consensus 679 ~~fkv~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~ 755 (1212)
+. ++++.+.|++|++|||++. ++ .+.+||++|+++|.+++.+|++..++ +.|.|||| ++....
T Consensus 384 ~~--~~~~~l~dv~p~slgie~~-----~g---~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~~g-e~~~~~--- 449 (605)
T 4b9q_A 384 GD--VKDVLLLDVTPLSLGIETM-----GG---VMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQG-ERKRAA--- 449 (605)
T ss_dssp TS--SCSEEEECBCSSCEEEEET-----TT---EEEEEECTTCBSSEEEEEEECCSSTTCCEEEEEEEES-SCSBGG---
T ss_pred CC--CCceEEEeeeeeEEEEEEc-----CC---EEEEEEeCCCcCCcceEEEeeeecccCceEEEEEEec-cccccc---
Confidence 87 6789999999999999886 33 37899999999999999999987554 99999999 765321
Q ss_pred hhccCceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccccCCC
Q psy18164 756 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSK 835 (1212)
Q Consensus 756 ~~~~~~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~~~~ 835 (1212)
.+..|++|.+.|+++++++. ++|+|+|++|.||+|+|++.+ .+|.
T Consensus 450 ----~n~~lg~~~l~~i~~~~~g~-------~~i~v~f~id~~gil~v~a~~---------~~tg--------------- 494 (605)
T 4b9q_A 450 ----DNKSLGQFNLDGINPAPRGM-------PQIEVTFDIDADGILHVSAKD---------KNSG--------------- 494 (605)
T ss_dssp ----GSEEEEEEEEECCCCCSTTC-------CCEEEEEEECTTSCEEEEEEE---------TTTC---------------
T ss_pred ----cCCEeeEEEEeCCCCCcCCC-------ceEEEEEEEcCCcEEEEEEEe---------cCCC---------------
Confidence 35678899999999886654 689999999999999999874 1110
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHHHHH
Q psy18164 836 TDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVE 915 (1212)
Q Consensus 836 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~eel~ 915 (1212)
|+ ..+.++ ....||++|++
T Consensus 495 -----------------------------------------------------~~----~~i~i~----~~~~ls~~ei~ 513 (605)
T 4b9q_A 495 -----------------------------------------------------KE----QKITIK----ASSGLNEDEIQ 513 (605)
T ss_dssp -----------------------------------------------------CE----ECCEEE----SCCSCCHHHHH
T ss_pred -----------------------------------------------------cE----EEEEec----CCCCCCHHHHH
Confidence 00 012221 12469999999
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHH
Q psy18164 916 KSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENK 995 (1212)
Q Consensus 916 ~~~~~l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~~~K 995 (1212)
++++++.++..+|+.++++.++||+||+|+|++|+.|+ ++..++++++|+.|...++++++||+.+ ++++|+++
T Consensus 514 ~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~ 587 (605)
T 4b9q_A 514 KMVRDAEANAEADRKCEELVQTRNQGDHLLHSTRKQVE--EAGDKLPADDKTAIESALTALETALKGE----DKAAIEAK 587 (605)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHGGGSCHHHHHHHHHHHHHHHHHHHSS----CHHHHHHH
T ss_pred HHHHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHH
Confidence 99999999999999999999999999999999999995 4788999999999999999999999954 58999999
Q ss_pred HHHHHHhhHHHHHHHHh
Q psy18164 996 LNEINSLVVPIWERHRE 1012 (1212)
Q Consensus 996 l~eL~~~~~pi~~R~~e 1012 (1212)
+++|++.++||..++++
T Consensus 588 ~~~l~~~~~~~~~~~~~ 604 (605)
T 4b9q_A 588 MQELAQVSQKLMEIAQQ 604 (605)
T ss_dssp HHHHHHHTHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999988754
|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-88 Score=843.75 Aligned_cols=594 Identities=27% Similarity=0.401 Sum_probs=526.0
Q ss_pred eEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEE-ecCcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCHH
Q psy18164 284 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAF-HKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 362 (1212)
Q Consensus 284 ~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f-~~~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~~ 362 (1212)
.+||||||||||+||++.+| .++++.|.+|+|++||+|+| .+++++||..|+.++.++|.++++++||+||+.++++.
T Consensus 3 ~viGIDlGTt~s~va~~~~g-~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~t~~~~Kr~iG~~~~d~~ 81 (605)
T 2kho_A 3 KIIGIDLGTTNSCVAIMDGT-TPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEE 81 (605)
T ss_dssp -CEEEECCSSEEEEEEEETT-EEEECCCTTSCSSEECEEEECTTSCEEESHHHHTTTTTCGGGEEECGGGTTTCBSSSTT
T ss_pred CEEEEEcCCcCEEEEEEECC-EEEEEECCCCCcccceEEEEECCCcEEECHHHHHHhhhCCCCEeehhhHhhCCCCCcHH
Confidence 47999999999999999988 67899999999999999999 45789999999999999999999999999999999999
Q ss_pred HHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHHH
Q psy18164 363 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 442 (1212)
Q Consensus 363 v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~Aa 442 (1212)
++...+.+||..+...+ +...+.+++ ..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++|+
T Consensus 82 v~~~~~~~p~~~~~~~~--g~~~i~~~g-~~~~~~ei~a~~L~~l~~~ae~~l~~~v~~~VitVPa~f~d~qr~a~~~A~ 158 (605)
T 2kho_A 82 VQRDVSIMPFKIIAADN--GDAWVEVKG-QKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAG 158 (605)
T ss_dssp HHHHHHHCSSCEEECTT--SBEEEEETT-EEECHHHHHHHHHHHHHHHHHHHHCSCCCEEEEEECTTCCHHHHHHHHHHH
T ss_pred HHHHhhcCCeEEEECCC--CceEEEECC-EEEcHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEECCCCCHHHHHHHHHHH
Confidence 99999999997654433 445566544 789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCC
Q psy18164 443 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 522 (1212)
Q Consensus 443 ~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~ 522 (1212)
++|||++++||+||+|||++|+..... . +.++||||+||||||+|++++.... ..+.++++++.++.
T Consensus 159 ~~AGl~v~~li~EP~AAAlay~l~~~~----~-~~~vlV~DlGGGT~Dvsi~~~~~~~--------~~g~~~v~a~~gd~ 225 (605)
T 2kho_A 159 RIAGLEVKRIINEPTAAALAYGLDKGT----G-NRTIAVYDLGGGTFDISIIEIDEVD--------GEKTFEVLATNGDT 225 (605)
T ss_dssp HTTTCEEEEEEEHHHHHHHHTTTTSSS----S-EEEEEEEEECSSCEEEEEEEEECTT--------TSCEEEEEEEEEES
T ss_pred HHcCCceEEEecCHHHHHHHhhhcccC----C-CCEEEEEECCCCeEEEEEEEEEecC--------CCCeEEEEEECCCC
Confidence 999999999999999999999986531 2 6899999999999999999985110 13489999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccC----cceEEEEeHH
Q psy18164 523 TLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDE----IDFKLLVTRA 598 (1212)
Q Consensus 523 ~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~----~d~~~~itR~ 598 (1212)
.+||.+||.+|++|+.++|+. +++.++..+++++.+|+.+||++|+.||.+.++.+.++++.++ .++.++|||+
T Consensus 226 ~lGG~d~D~~l~~~l~~~~~~--~~~~~~~~~~~~~~~L~~~aE~~K~~ls~~~~~~i~l~~~~~~~~G~~~~~~~itr~ 303 (605)
T 2kho_A 226 HLGGEDFDSRLINYLVEEFKK--DQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRA 303 (605)
T ss_dssp SCSGGGTHHHHHHHHHHHHHH--HHSCCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHH
T ss_pred CccHHHHHHHHHHHHHHHHHH--HhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEecccccCCCCceEEEEEEeHH
Confidence 999999999999999999988 4456888899999999999999999999999999999887753 6788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhc
Q psy18164 599 EFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 678 (1212)
Q Consensus 599 efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls 678 (1212)
+|+++|+|+++++..+|+++|+++++...+|+.|+||||+||+|+|++.|++.||.++..++|||+|||+|||++|+.++
T Consensus 304 ~fe~l~~~~~~~i~~~i~~~L~~a~~~~~~i~~VvLvGG~srip~v~~~l~~~fg~~~~~~~npd~aVA~GAa~~a~~l~ 383 (605)
T 2kho_A 304 KLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLT 383 (605)
T ss_dssp HHHTTCCSTTGGGTSHHHHHHHTTTCCTTTCSEEEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChhhCceEEEECCcccChHHHHHHHHhcCCCcCcCCCcchHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999998
Q ss_pred CCcccceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccCc---eEEEEEeccCcccCChhh
Q psy18164 679 TGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQ 755 (1212)
Q Consensus 679 ~~fkv~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~ 755 (1212)
+. ++++.+.|++|+++|+++. ++ .+.+||++|+++|.+++.+|++..++ +.|.||+| +... . .
T Consensus 384 ~~--~~~~~l~dv~p~slgi~~~-----~g---~~~~li~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~g-e~~~-~-~- 449 (605)
T 2kho_A 384 GD--VKDVLLLDVTPLSLGIETM-----GG---VMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQG-ERKR-A-A- 449 (605)
T ss_dssp TS--CCCCCCSBCCCCCEEEEET-----TT---EEEEEECTTBCSSEEEEEEECCSSTTCCEEEEEEEES-SCSB-G-G-
T ss_pred CC--ccCceEEeeeeeecccccc-----CC---ceEEEEecccccCccceEEEEecCCCceEEEEEEEec-cCcc-c-c-
Confidence 76 6889999999999999986 33 37899999999999999999887554 89999999 7643 2 1
Q ss_pred hhccCceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccccCCC
Q psy18164 756 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSK 835 (1212)
Q Consensus 756 ~~~~~~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~~~~ 835 (1212)
.+..|++|.+.|+++++++. ++|+|+|.+|.||+|+|++.+ ..|.
T Consensus 450 ----~n~~lg~~~l~~i~~~~~g~-------~~i~v~f~id~~gil~v~a~~---------~~tg--------------- 494 (605)
T 2kho_A 450 ----DNKSLGQFNLDGINPAPRGM-------PQIEVTFDIDADGILHVSAKD---------KNSG--------------- 494 (605)
T ss_dssp ----GSEEEEEEEEECCCSCCTTC-------SCEEEEEEECTTSCEEEEEEE---------TTTC---------------
T ss_pred ----cCcEEeEEEecCCCCCCCCC-------cEEEEEEEEcCCCceeEEEEE---------cCCC---------------
Confidence 35668899999999875544 689999999999999998873 0000
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHHHHH
Q psy18164 836 TDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVE 915 (1212)
Q Consensus 836 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~eel~ 915 (1212)
+.. .++++ . . .+||+++++
T Consensus 495 -----------------------------------------------------~~~----~i~i~--~-~-~~ls~~~i~ 513 (605)
T 2kho_A 495 -----------------------------------------------------KEQ----KITIK--A-S-SGLNEDEIQ 513 (605)
T ss_dssp -----------------------------------------------------CEE----EEEEC--T-T-SSCCHHHHH
T ss_pred -----------------------------------------------------cee----ecccc--c-c-cCCCHHHHH
Confidence 000 12221 1 2 579999999
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHH
Q psy18164 916 KSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENK 995 (1212)
Q Consensus 916 ~~~~~l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~~~K 995 (1212)
++++++.++..+|+.++++.+++|+||+|+|++|++|+ ++..++++++|++|.+.|+++++||+++ ++++|+++
T Consensus 514 ~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~l~--~~~~~~~~~~~~~i~~~~~~~~~~l~~~----~~~~~~~~ 587 (605)
T 2kho_A 514 KMVRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQVE--EAGDKLPADDKTAIESALTALETALKGE----DKAAIEAK 587 (605)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHGGGSCHHHHHHHHHHHHHHHHHTTSS----CHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHH
Confidence 99999999999999999999999999999999999995 3889999999999999999999999843 89999999
Q ss_pred HHHHHHhhHHHHHHHHh
Q psy18164 996 LNEINSLVVPIWERHRE 1012 (1212)
Q Consensus 996 l~eL~~~~~pi~~R~~e 1012 (1212)
+++|+++++||..|++.
T Consensus 588 ~~~l~~~~~~~~~~~~~ 604 (605)
T 2kho_A 588 MQELAQVSQKLMEIAQQ 604 (605)
T ss_dssp HHHHHTTCHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999998753
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-82 Score=779.75 Aligned_cols=542 Identities=30% Similarity=0.465 Sum_probs=482.5
Q ss_pred eEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEecCcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCHHH
Q psy18164 284 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVV 363 (1212)
Q Consensus 284 ~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~~v 363 (1212)
.+||||||||||+||++.+| +++++.|..|+|++||+|+|.+++++||..|..++.++|.++++++|||||+.++|+.+
T Consensus 5 ~~iGIDlGTt~s~va~~~~g-~~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~v 83 (554)
T 1yuw_A 5 PAVGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVV 83 (554)
T ss_dssp CCEEEEECSSEEEEEEECSS-SEEECCCTTSCSEEECCEEECSSCEEETHHHHTTTTTCGGGEECCGGGTTTCCSSCSHH
T ss_pred CEEEEEeCcccEEEEEEECC-EEEEEECCCCCeecceEEEEcCCcEEEcHHHHHhhhhChhhehHhhHHhcCCCCCcHHH
Confidence 48999999999999999988 88999999999999999999988999999999999999999999999999999999999
Q ss_pred HhhhhcCCceeeecCCCcceEEEEcCC-ceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHHH
Q psy18164 364 QLFKSRFPYYDIVADEERGTIVFKTND-NELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 442 (1212)
Q Consensus 364 ~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~Aa 442 (1212)
+...+.+||..+.. ++...+.+...+ ...++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++||
T Consensus 84 ~~~~~~~p~~v~~~-~g~~~~~v~~~~~~~~~sp~ei~a~~L~~lk~~ae~~lg~~v~~~VitVPa~f~~~qr~a~~~A~ 162 (554)
T 1yuw_A 84 QSDMKHWPFMVVND-AGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAG 162 (554)
T ss_dssp HHHHTTCSSEEEEE-TTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEECTTCCHHHHHHHHHHH
T ss_pred HHHhhcCCeEEEec-CCceEEEEEECCCceEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 99999999976643 333334444333 4789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCC
Q psy18164 443 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 522 (1212)
Q Consensus 443 ~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~ 522 (1212)
++|||+++++++||+|||++|+..+... . +.++||||+||||||+|++++. .+.++++++.++.
T Consensus 163 ~~AGl~~~~li~EP~AAAlay~~~~~~~---~-~~~vlV~D~GgGT~Dvsv~~~~------------~g~~~v~a~~g~~ 226 (554)
T 1yuw_A 163 TIAGLNVLRIINEPTAAAIAYGLDKKVG---A-ERNVLIFDLGGGTFDVSILTIA------------AGIFEVKSTAGDT 226 (554)
T ss_dssp HTTTCEEEEEEEHHHHHHHHTTCSTTCS---S-CEEEEEEEECSSCEEEEEEEEE------------TTEEEEEEEEEET
T ss_pred HHcCCCeEEEeCcHHHHHHHHHhhccCC---C-CcEEEEEEcCCCeEEEEEEEEc------------CCcEEEEEEeCCC
Confidence 9999999999999999999999865421 2 6899999999999999999986 3478999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccCcceEEEEeHHHHHH
Q psy18164 523 TLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEA 602 (1212)
Q Consensus 523 ~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~~d~~~~itR~efe~ 602 (1212)
.+||++||.+|++|+.++|.. +++.++..+++++.+|+.+||++|+.||.+.++.+.+++++++.|+...|+|++|++
T Consensus 227 ~lGG~d~d~~l~~~l~~~~~~--~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~i~~~~~g~~~~~~ltr~~~e~ 304 (554)
T 1yuw_A 227 HLGGEDFDNRMVNHFIAEFKR--KHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEE 304 (554)
T ss_dssp TCSHHHHHHHHHHHHHHHHHH--HTSCCTTSCHHHHHHHHHHHHHHHHHHTTSSEEEEEETTCSSSCCEEEEEEHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH--HhCCCcccCHHHHHHHHHHHHHHhhhcccCceEEEEEeeccCCceEEEEEEHHHHHH
Confidence 999999999999999999988 455688889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhC-CcccCCCCchhHHHhhHHHHHHhhcC--
Q psy18164 603 LNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG-VELSKNLNTDEAAALGAVYKAADLST-- 679 (1212)
Q Consensus 603 l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg-~~i~~~~n~deaVA~GAa~~aa~ls~-- 679 (1212)
+|+++++++..+|+++|+++++...+|+.|+||||+||+|+|++.|++.|+ .++..+.||++|||+|||++|+.+++
T Consensus 305 l~~~~~~~i~~~i~~~L~~a~~~~~~i~~VvLvGG~srip~v~~~l~~~f~~~~v~~~~np~~aVA~Gaa~~a~~l~~~~ 384 (554)
T 1yuw_A 305 LNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDK 384 (554)
T ss_dssp HTHHHHHHTTHHHHHHHHHTTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCCSCTTTHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCcccChHHHHHHHHHcCCCccccCCCchhHHHHHHHHHHHHhcCCc
Confidence 999999999999999999999999999999999999999999999999997 78889999999999999999999998
Q ss_pred CcccceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccCc---eEEEEEeccCcccCChhhh
Q psy18164 680 GFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQI 756 (1212)
Q Consensus 680 ~fkv~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~~ 756 (1212)
.++++++.+.|++|++|||++. ++ .+.+||++|+++|.+++.+|++..++ +.|.||+| +.....
T Consensus 385 ~~~~~~~~~~dv~p~slgi~~~-----~g---~~~~li~r~t~iP~~~~~~f~~~~d~q~~v~i~v~~g-e~~~~~---- 451 (554)
T 1yuw_A 385 SENVQDLLLLDVTPLSLGIETA-----GG---VMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEG-ERAMTK---- 451 (554)
T ss_dssp CCCTTSSCCCCBCSSCEEEEET-----TT---EEEEEECTTCBSSEEEEEEEEESSTTCSEEEEEEEES-SSSBGG----
T ss_pred cccccceEEEEeeeeEEEEEec-----Cc---eEEEEEECCCccCceeEEEeeeccCCCceEEEEEEec-Cccccc----
Confidence 4788999999999999999986 33 37899999999999999999886554 89999999 765321
Q ss_pred hccCceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccccCCCC
Q psy18164 757 AMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKT 836 (1212)
Q Consensus 757 ~~~~~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~~~~~ 836 (1212)
.+..|+++.|.|+++++++. ++|+|+|.+|.||+|+|++.+ ..|.
T Consensus 452 ---~n~~lg~~~l~~i~~~~~g~-------~~i~v~f~id~~gil~v~a~~---------~~tg---------------- 496 (554)
T 1yuw_A 452 ---DNNLLGKFELTGIPPAPRGV-------PQIEVTFDIDANGILNVSAVD---------KSTG---------------- 496 (554)
T ss_dssp ---GSEEEEEEEEECCCCCSTTC-------CCEEEEEEECTTCCEEEEEEE---------TTTC----------------
T ss_pred ---cCcEEEEEEEeCCCCCcccc-------cEEEEEEEEccCceEEEEEEe---------ccCC----------------
Confidence 35668899999999875544 689999999999999998873 1100
Q ss_pred CCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHHHHHH
Q psy18164 837 DENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEK 916 (1212)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~eel~~ 916 (1212)
++. .++++ ....+||++|+++
T Consensus 497 ----------------------------------------------------~~~----~~~i~---~~~~~ls~~~i~~ 517 (554)
T 1yuw_A 497 ----------------------------------------------------KEN----KITIT---NDKGRLSKEDIER 517 (554)
T ss_dssp ----------------------------------------------------CEE----EEEEC---CCSSCSCHHHHHH
T ss_pred ----------------------------------------------------Cce----eEEEe---cCCCCCCHHHHHH
Confidence 000 01111 2335699999999
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHhhHHHHHHHHHhcc
Q psy18164 917 SLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKL 952 (1212)
Q Consensus 917 ~~~~l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL 952 (1212)
+++++.++..+|+.++++.++||+||+|+|++|++|
T Consensus 518 ~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~l 553 (554)
T 1yuw_A 518 MVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATV 553 (554)
T ss_dssp HHHHHHHTTTHHHHHTTSSCSCEECSSCCSCSCCCC
T ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999987
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-73 Score=697.14 Aligned_cols=500 Identities=27% Similarity=0.426 Sum_probs=437.4
Q ss_pred eEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEecCcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCHHH
Q psy18164 284 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVV 363 (1212)
Q Consensus 284 ~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~~v 363 (1212)
.+|||||||+||+||++.+| .++++.|..|++++||+|+|.+++++||..|..+..++| ++++++||+||+++.
T Consensus 3 ~~iGIDlGTt~s~va~~~~g-~~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~p-~~~~~~Kr~lg~p~~---- 76 (509)
T 2v7y_A 3 KIIGIDLGTTNSCVAVLEGG-EVKVIPNPEGNRTTPSVVAFKNGERLVGEVAKRQAITNP-NTIISIKRHMGTDYK---- 76 (509)
T ss_dssp CEEEEEECSSEEEEEEEETT-EEEECCCTTSCSSEECEEEESSSSEEESHHHHTTTTTCS-SEEECGGGTTTSCCC----
T ss_pred CEEEEEcCCceEEEEEEECC-EEEEEECCCCCcccceEEEECCCcEEECHHHHHhHHhCC-CcHHHHHHhcCCCcE----
Confidence 48999999999999999988 678999999999999999998889999999999999999 999999999998432
Q ss_pred HhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHHHH
Q psy18164 364 QLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGE 443 (1212)
Q Consensus 364 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~Aa~ 443 (1212)
+.++ +..++|+++++++|++|+..++.+++.++.++|||||++|++.||+++++|++
T Consensus 77 ----------------------~~~~-g~~~~~~ei~a~~L~~l~~~ae~~l~~~~~~~VitvPa~~~~~qr~a~~~a~~ 133 (509)
T 2v7y_A 77 ----------------------VEIE-GKQYTPQEISAIILQYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGR 133 (509)
T ss_dssp ----------------------EEET-TEEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred ----------------------EEEC-CEEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 1122 25789999999999999999999999999999999999999999999999999
Q ss_pred HcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCC
Q psy18164 444 LAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 523 (1212)
Q Consensus 444 ~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~ 523 (1212)
.||++++++++||+|||++|+.... . +.++||||+||||||++++++. .+.++++++.++..
T Consensus 134 ~AGl~~~~li~Ep~AAAlay~~~~~-----~-~~~vlV~D~GgGT~Dvsv~~~~------------~g~~~v~a~~g~~~ 195 (509)
T 2v7y_A 134 IAGLEVERIINEPTAAALAYGLDKE-----E-DQTILVYDLGGGTFDVSILELG------------DGVFEVKATAGDNH 195 (509)
T ss_dssp HTTCEEEEEEEHHHHHHHHTTGGGS-----C-SEEEEEEEECSSCEEEEEEEEE------------TTEEEEEEEEEETT
T ss_pred HcCCCeEEEecCHHHHHHHHhhccC-----C-CCEEEEEECCCCeEEEEEEEEc------------CCeEEEEEecCCCC
Confidence 9999999999999999999998653 2 6899999999999999999985 34789999999999
Q ss_pred CChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeeccc----CcceEEEEeHHH
Q psy18164 524 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLID----EIDFKLLVTRAE 599 (1212)
Q Consensus 524 lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~----~~d~~~~itR~e 599 (1212)
+||.+||..|++|+.++|+. +++.++..+++++.+|+.+||++|+.||.+.++.+.++++.+ +.++.++|||++
T Consensus 196 lGG~d~d~~l~~~l~~~~~~--~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~l~~~~~~~~G~~~~~~~itr~~ 273 (509)
T 2v7y_A 196 LGGDDFDQVIIDYLVNQFKQ--EHGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISANENGPLHLEMTLTRAK 273 (509)
T ss_dssp CSHHHHHHHHHHHHHHHHHH--HHSCCGGGCHHHHHHHHHHHHHHHHHTTTCSEEEEEEEEEEEETTEEEEEEEEEEHHH
T ss_pred cCHHHHHHHHHHHHHHHHHH--HhCCCcccCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCCCCCeeEEEEEEHHH
Confidence 99999999999999999988 445577888999999999999999999999999999988765 257888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcC
Q psy18164 600 FEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLST 679 (1212)
Q Consensus 600 fe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~ 679 (1212)
|+++|+|+++++..+|+++|+++++...+|+.|+|+||+||+|+|++.|++.||.++....||++|||+|||++|+.+++
T Consensus 274 fe~l~~~~~~~i~~~i~~~L~~a~~~~~~i~~VvLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~Gaa~~a~~l~~ 353 (509)
T 2v7y_A 274 FEELSAHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPAVQEAIKRELGKEPHKGVNPDEVVAIGAAIQGGVIAG 353 (509)
T ss_dssp HHHHTHHHHHTTHHHHHHHHHHHTCCGGGCSEEEEESGGGGCHHHHHHHHHHHSSCCBCCSCTTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChhHCcEEEEECCcccChHHHHHHHHHhCCCcCcCCCchhhhHhhHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999988899999999999999999999987
Q ss_pred CcccceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccCc---eEEEEEeccCcccCChhhh
Q psy18164 680 GFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQI 756 (1212)
Q Consensus 680 ~fkv~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~~ 756 (1212)
. ++++.+.|++||+||+++. ++ .+.+||++|+++|.+++.+|++..++ +.|.+|+| +.....
T Consensus 354 ~--~~~~~~~dv~p~slgi~~~-----~~---~~~~li~~~~~iP~~~~~~f~~~~d~q~~~~i~v~~g-e~~~~~---- 418 (509)
T 2v7y_A 354 E--VKDVVLLDVTPLSLGIETM-----GG---VFTKLIERNTTIPTSKSQVFTTAADNQTTVDIHVLQG-ERPMAA---- 418 (509)
T ss_dssp C--CCCCCCCCBCSSEEEEEET-----TT---EEEEEECTTCBSSEEEEEEECCSSTTCCEEEEEEEEE-SSSBGG----
T ss_pred C--ccCceEEEeeccccceeec-----CC---ceEEEEeCCCcCCcceEEEEEeeccCcEEEEEEEEec-Cccccc----
Confidence 6 6789999999999999986 33 37889999999999999999876553 89999999 764321
Q ss_pred hccCceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccccCCCC
Q psy18164 757 AMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKT 836 (1212)
Q Consensus 757 ~~~~~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~~~~~ 836 (1212)
.+..|+++.+.|+++++++. ++|+|+|++|.||+|+|++.+ ..|.
T Consensus 419 ---~~~~lg~~~l~~i~~~~~g~-------~~i~v~f~id~~gil~v~a~~---------~~~g---------------- 463 (509)
T 2v7y_A 419 ---DNKSLGRFQLTGIPPAPRGV-------PQIEVTFDIDANGIVHVRAKD---------LGTN---------------- 463 (509)
T ss_dssp ---GSEEEEEEEEECCCCCCTTC-------SCEEEEEEECTTSCEEEEEEE---------TTTC----------------
T ss_pred ---cCcEEEEEEEeCCCCCCCcc-------cEEEEEEEEcCCceEEEEEEE---------cCCC----------------
Confidence 25668899999999775543 689999999999999999873 0000
Q ss_pred CCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHHHHHH
Q psy18164 837 DENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEK 916 (1212)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~eel~~ 916 (1212)
++. .+.++ . . .+||++++++
T Consensus 464 ----------------------------------------------------~~~----~~~i~--~-~-~~l~~~~i~~ 483 (509)
T 2v7y_A 464 ----------------------------------------------------KEQ----SITIK--S-S-SGLSEEEIQR 483 (509)
T ss_dssp ----------------------------------------------------CEE----EEEEC--S-S-CSCCSHHHHH
T ss_pred ----------------------------------------------------cEE----EEEEE--e-c-CCCCHHHHHH
Confidence 000 11221 1 1 5699999999
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHhhHH
Q psy18164 917 SLSKLDSLNQIEHAKVRKEKALNSLE 942 (1212)
Q Consensus 917 ~~~~l~~l~~~D~~~~~~~eakN~LE 942 (1212)
+++++.+|..+|+.++++.++||+||
T Consensus 484 ~~~~~~~~~~~d~~~~~~~~~~~~~e 509 (509)
T 2v7y_A 484 MIKEAEENAEADRKRKEAAELRNEAD 509 (509)
T ss_dssp HHHHHHHSCGGGGGGGGCCCC-----
T ss_pred HHHHHHHhhhccHHHHHHHHHHhhcC
Confidence 99999999999999999999999997
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-60 Score=562.44 Aligned_cols=381 Identities=33% Similarity=0.506 Sum_probs=349.9
Q ss_pred cCceEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEecCcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCC
Q psy18164 281 YGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDS 360 (1212)
Q Consensus 281 ~~~~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~ 360 (1212)
.++.+||||||||||+||++.+| .++++.|..|++++||+|+|.+++++||..|..++.++|.++++++||+||+.+++
T Consensus 21 ~~~~viGID~GTt~s~va~~~~g-~~~ii~~~~g~~~~PS~v~~~~~~~~vG~~A~~~~~~~~~~~~~~~Kr~lg~~~~~ 99 (404)
T 3i33_A 21 QSMPAIGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTIFDAKRLIGRKFED 99 (404)
T ss_dssp --CCCEEEEECSSEEEEEEEETT-EEEECCCTTSCSSEECCEEECSSCEEETHHHHHTTTTCSTTEECCGGGTTTCCTTS
T ss_pred ccCCEEEEEcCCccEEEEEEECC-eeEEEECCCCCcccceEEEECCCCEEecHHHHHhhHhChhhhHHHHHHHhCCCCCc
Confidence 45789999999999999999998 78899999999999999999988999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCceeeecCCCcceEEEEcCC-ceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHH
Q psy18164 361 PVVQLFKSRFPYYDIVADEERGTIVFKTND-NELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSML 439 (1212)
Q Consensus 361 ~~v~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~ 439 (1212)
+.++...+.+||..+. .++...+.+...+ ...++|+++++++|+++++.++.+++.++.++|||||++|++.||++++
T Consensus 100 ~~~~~~~~~~p~~~~~-~~g~~~~~v~~~~~~~~~~~~ei~a~~L~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~~~ 178 (404)
T 3i33_A 100 ATVQSDMKHWPFRVVS-EGGKPKVQVEYKGETKTFFPEEISSMVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATK 178 (404)
T ss_dssp HHHHHHHTTCSSEEEE-ETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEECTTCCHHHHHHHH
T ss_pred HHHHHHHhhCCceEEc-cCCceEEEEEeCCCceEEcHHHHHHHHHHHHHHHHHHHhccCCCcEEEEECCCCCHHHHHHHH
Confidence 9999999999997665 3334455555544 3689999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEe
Q psy18164 440 KAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVG 519 (1212)
Q Consensus 440 ~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~ 519 (1212)
+||+.||++++.+++||+|||++|+....... ..+..+||||+||||||++++++. .+.+++++..
T Consensus 179 ~a~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~--~~~~~vlV~D~GgGT~dvsv~~~~------------~~~~~v~~~~ 244 (404)
T 3i33_A 179 DAGTITGLNVLRIINEPTAAAIAYGLDKKGCA--GGEKNVLIFDLGGGTFDVSILTIE------------DGIFEVKSTA 244 (404)
T ss_dssp HHHHHHTCEEEEEEEHHHHHHHHTTTTSSCSS--SSCCEEEEEEECSSCEEEEEEEEE------------TTEEEEEEEE
T ss_pred HHHHHcCCCeEEEeccHHHHHHHHHhhccccc--CCCceEEEEECCCCcEEEEEEEEe------------CCeEEEEEEe
Confidence 99999999999999999999999988654221 126899999999999999999986 3479999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccCcceEEEEeHHH
Q psy18164 520 YDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAE 599 (1212)
Q Consensus 520 ~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~~d~~~~itR~e 599 (1212)
++..+||.+||.+|++++.++|.. +++.++..+++++.+|+.+||++|+.||.+..+.+.++.++++.++.+.|+|++
T Consensus 245 ~~~~lGG~~~d~~l~~~l~~~~~~--~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~~~~~~~~~g~~~~~~i~r~~ 322 (404)
T 3i33_A 245 GDTHLGGEDFDNRMVSHLAEEFKR--KHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGVDFYTSITRAR 322 (404)
T ss_dssp EETTCSHHHHHHHHHHHHHHHHHH--HHSCCCTTCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEETTEEEEEEEEHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHH--HhCCCcCCCHHHHHHHHHHHHHHHHhCCcCcceEEEEeeccCCceeEEEEcHHH
Confidence 999999999999999999999988 445578889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHh-CCcccCCCCchhHHHhhHHHHHHhhc
Q psy18164 600 FEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVV-GVELSKNLNTDEAAALGAVYKAADLS 678 (1212)
Q Consensus 600 fe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~f-g~~i~~~~n~deaVA~GAa~~aa~ls 678 (1212)
|+++|+++++++..+|.++|+.+++...+|+.|+|+||+||+|+|++.|++.| |.++....||++|||+|||++|+.++
T Consensus 323 ~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~ 402 (404)
T 3i33_A 323 FEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILI 402 (404)
T ss_dssp HHHHTHHHHHHTHHHHHHHHHHHTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCSSCTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCEEEEECCccccHHHHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999 58889999999999999999999987
Q ss_pred C
Q psy18164 679 T 679 (1212)
Q Consensus 679 ~ 679 (1212)
+
T Consensus 403 ~ 403 (404)
T 3i33_A 403 G 403 (404)
T ss_dssp -
T ss_pred C
Confidence 5
|
| >4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-58 Score=552.96 Aligned_cols=379 Identities=24% Similarity=0.367 Sum_probs=337.1
Q ss_pred CceEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEecCcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCH
Q psy18164 282 GIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 361 (1212)
Q Consensus 282 ~~~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~ 361 (1212)
.+.+||||||||||+||++.+| +++++.|..|++++||+|+|.+++++||..|..++.++|.+++.++|++||+.++++
T Consensus 12 ~~~vvGIDlGTt~s~va~~~~g-~~~ii~~~~g~~~~PS~v~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~llg~~~~~~ 90 (409)
T 4gni_A 12 ERVVIGITFGNSNSSIAHTVDD-KAEVIANEDGDRQIPTILSYVDGDEYYGQQAKNFLVRNPKNTVAYFRDILGQDFKSV 90 (409)
T ss_dssp -CCEEEEEECSSEEEEEEEETT-EEEEECCTTSCSSEECEEEEETTEEEEHHHHHHHHHHCGGGEEESCGGGTTCCGGGC
T ss_pred CCcEEEEEcCCCeEEEEEEeCC-ceEEEECCCCCccCceEEEECCCcEEEcHHHHHhhHhChHhhHHHHHHHhCCCccch
Confidence 4679999999999999999777 889999999999999999999999999999999999999999999999999998886
Q ss_pred HHHhhhhcCCceeeecCCCcceEEEEcC-------CceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHH
Q psy18164 362 VVQLFKSRFPYYDIVADEERGTIVFKTN-------DNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIE 434 (1212)
Q Consensus 362 ~v~~~~~~~p~~~~~~~~~~~~~~~~~~-------~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~q 434 (1212)
.++.....++. .. ..+.+.+.+. .+..++|+++++++|++|++.++.+++.++.++|||||++|++.|
T Consensus 91 ~~~~~~~~~~~--~~---~~g~~~~~v~~~~~~~~~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~vitvPa~~~~~~ 165 (409)
T 4gni_A 91 DPTHNHASAHP--QE---AGDNVVFTIKDKAEEDAEPSTLTVSEIATRYLRRLVGAASEYLGKKVTSAVITIPTNFTEKQ 165 (409)
T ss_dssp CCGGGTTSCCC--EE---ETTEEEEEECCSSCSSCCCEEEEHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHH
T ss_pred hhhhhccccce--ec---CCCcEEEEEecCCCCCCcceEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHH
Confidence 65544332222 21 2345566543 236899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEE
Q psy18164 435 RQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVS 514 (1212)
Q Consensus 435 R~al~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~ 514 (1212)
|+++++||+.|||+++.|++||+|||++|+..... ... +..+||||+||||||++++++. .+.++
T Consensus 166 r~~~~~a~~~AGl~~~~li~Ep~AAa~~~~~~~~~--~~~-~~~vlv~D~GgGT~dvsv~~~~------------~~~~~ 230 (409)
T 4gni_A 166 KAALIAAAAAADLEVLQLISEPAAAVLAYDARPEA--TIS-DKIIVVADLGGSRSDVTVLASR------------SGMYT 230 (409)
T ss_dssp HHHHHHHHHHTTCEEEEEEEHHHHHHHHTTC--------C-CEEEEEEEECSSCEEEEEEEEE------------TTEEE
T ss_pred HHHHHHHHHHcCCCeEEEEcCHHHHHHHHhccccc--CCC-CCEEEEEECCCCceEEEEEEEe------------CCeEE
Confidence 99999999999999999999999999999876421 112 7899999999999999999986 34899
Q ss_pred EEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccCcceEEE
Q psy18164 515 VLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLL 594 (1212)
Q Consensus 515 vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~~d~~~~ 594 (1212)
++++.++..+||.+||..|++++.++|...++...++..+++++.+|+.+||++|+.||.+.++.+.++++.++.++.+.
T Consensus 231 v~~~~~~~~lGG~~~d~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~i~i~~~~~~~~~~~~ 310 (409)
T 4gni_A 231 ILATVHDYEYHGIALDKVLIDHFSKEFLKKNPGAKDPRENPRSLAKLRLEAESTKRALSRSTNASFSVESLIDGLDFAST 310 (409)
T ss_dssp EEEEEEESSSSHHHHHHHHHHHHHHHHHHHSTTCCCGGGSHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEETTEEEEEE
T ss_pred EEEecCCCCcCHHHHHHHHHHHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHhCCCCCceEEEeecccCCcceEEE
Confidence 99999999999999999999999999998443226788899999999999999999999999999999999999999999
Q ss_pred EeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCc--c------cCCCCchhHH
Q psy18164 595 VTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVE--L------SKNLNTDEAA 666 (1212)
Q Consensus 595 itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~--i------~~~~n~deaV 666 (1212)
|||++|+++|+++++++..+|+++|+.+++...+|+.|+|+||+||+|+|++.|++.||.. + ...+||++||
T Consensus 311 itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~v~~P~~~~~~~~p~~av 390 (409)
T 4gni_A 311 INRLRYETIARTVFEGFNRLVESAVKKAGLDPLDVDEVIMSGGTSNTPRIAANFRYIFPESTRILAPSTDPSALNPSELQ 390 (409)
T ss_dssp EEHHHHHHHTHHHHHHHHHHHHHHHHHTTCCGGGCCEEEEESGGGGCHHHHHHHHHHSCTTSEEESTTTCTTCCCTTTHH
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCccccHHHHHHHHHHcCCccccccccccCCCcCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999953 4 6889999999
Q ss_pred HhhHHHHHHhhcCCc
Q psy18164 667 ALGAVYKAADLSTGF 681 (1212)
Q Consensus 667 A~GAa~~aa~ls~~f 681 (1212)
|+|||++|+.....+
T Consensus 391 a~GAa~~~~~~~~~~ 405 (409)
T 4gni_A 391 ARGAALQASLIQEHH 405 (409)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHhhhhhhhh
Confidence 999999999877653
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-56 Score=530.15 Aligned_cols=376 Identities=31% Similarity=0.450 Sum_probs=336.3
Q ss_pred eEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEe-cCcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCHH
Q psy18164 284 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 362 (1212)
Q Consensus 284 ~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~-~~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~~ 362 (1212)
.+||||||||||+||++.+| .++++.|..|++++||+|+|. +++++||..|..+..++|.++++++|++||+.++++.
T Consensus 3 ~~vGIDlGTt~s~va~~~~g-~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 81 (383)
T 1dkg_D 3 KIIGIDLGTTNSCVAIMDGT-TPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEE 81 (383)
T ss_dssp CCCEEECCSSEEEEEEEETT-EEEECCCTTSCSEEECEEEECTTSCEEESHHHHTTSTTCGGGEEECGGGTTTCBSCSHH
T ss_pred cEEEEEcCCCCEEEEEEECC-eeEEEECCCCCcccceEEEEECCCCEEECHHHHHhhhhCccceeehhHHhhCCCCCcHH
Confidence 47899999999999999988 678999999999999999995 5789999999999999999999999999999999999
Q ss_pred HHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHHH
Q psy18164 363 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 442 (1212)
Q Consensus 363 v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~Aa 442 (1212)
++...+.+||..+...+ +...+.++ +..++|+++++++|+++++.++.+++.++.++|||||++|++.||+++++|+
T Consensus 82 ~~~~~~~~p~~~~~~~~--~~~~~~~~-g~~~~~~~i~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~~~~a~ 158 (383)
T 1dkg_D 82 VQRDVSIMPFKIIAADN--GDAWVEVK-GQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAG 158 (383)
T ss_dssp HHHHTTTCSSEEEECSS--SBEEEEET-TEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEECBCTTCCHHHHHHHHHHH
T ss_pred HHHHhhcCCeEEEEcCC--CcEEEEEC-CEEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 99888889986554333 34455554 4689999999999999999999999988999999999999999999999999
Q ss_pred HHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCC
Q psy18164 443 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 522 (1212)
Q Consensus 443 ~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~ 522 (1212)
+.||++++.+++||+|||++|+..... . +..+||||+||||||++++++.... ..+.++++++.++.
T Consensus 159 ~~aGl~~~~li~Ep~Aaa~~~~~~~~~----~-~~~~lVvD~Gggttdvsv~~~~~~~--------~~~~~~v~~~~~~~ 225 (383)
T 1dkg_D 159 RIAGLEVKRIINEPTAAALAYGLDKGT----G-NRTIAVYDLGGGTFDISIIEIDEVD--------GEKTFEVLATNGDT 225 (383)
T ss_dssp HHTTCEESCCCBHHHHHHHHHTCCC-C----C-EEEEEEEEECSSCEEEEEEEEEC------------CCCEEEEEEEES
T ss_pred HHcCCceEEEeccHHHHHHHHHhccCC----C-CcEEEEEEcCCCeEEEEEEEEEecC--------CCCeEEEEEEeCCC
Confidence 999999999999999999999875431 2 6899999999999999999975211 12368899999999
Q ss_pred CCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeeccc----CcceEEEEeHH
Q psy18164 523 TLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLID----EIDFKLLVTRA 598 (1212)
Q Consensus 523 ~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~----~~d~~~~itR~ 598 (1212)
.+||.+||+.|++++.++|.. +++.++..+++++.+|+.+||++|+.||.+.+..+.++.+.+ +.++.++|+|+
T Consensus 226 ~lGG~~id~~l~~~l~~~~~~--~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~i~i~~~~~~~~G~~~~~~~it~~ 303 (383)
T 1dkg_D 226 HLGGEDFDSRLINYLVEEFKK--DQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRA 303 (383)
T ss_dssp SCSHHHHHHHHHHHHHHHHHH--HHCCCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH--HhCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEecccccCCCCeeEEEEEeHH
Confidence 999999999999999999987 445577788999999999999999999999888888887664 25677899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhc
Q psy18164 599 EFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 678 (1212)
Q Consensus 599 efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls 678 (1212)
+|+++|+|+++++..+|+++|+.+++...+|+.|+|+||+||+|.|++.|++.||.++..+.||++|||+|||++|+++|
T Consensus 304 ~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~IvL~GG~s~~p~l~~~l~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~ 383 (383)
T 1dkg_D 304 KLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLT 383 (383)
T ss_dssp HHHHHSHHHHHHHHHHHHHHHHTTTCCTTTCCEEEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCEEEEecCccccHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999889999999999999999999999999998888999999999999999999875
|
| >1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=370.17 Aligned_cols=310 Identities=20% Similarity=0.248 Sum_probs=244.1
Q ss_pred eEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEecC--cE-eecHHHHHhhhhCCCchHhHhHHhcCCCCCC
Q psy18164 284 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG--ER-TFGEDAQIIGTRFPSNSYGYFLDLLGKSIDS 360 (1212)
Q Consensus 284 ~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~~--~r-~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~ 360 (1212)
.++||||||+||+|++..+| ++. .+||+|+|..+ .+ ++|++|..+..++|.++..
T Consensus 4 ~~igIDlGT~~s~v~~~~~~----~~~------~~PS~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~------------ 61 (344)
T 1jce_A 4 KDIGIDLGTANTLVFLRGKG----IVV------NEPSVIAIDSTTGEILKVGLEAKNMIGKTPATIKA------------ 61 (344)
T ss_dssp CEEEEEECSSEEEEEETTTE----EEE------EEESCEEEETTTCCEEEESHHHHTTTTCCCTTEEE------------
T ss_pred ceEEEEcCcCcEEEEECCCC----EEE------eeCcEEEEecCCCcEEEEcHHHHHhcccCCCCeEE------------
Confidence 58999999999999875433 222 28999999754 44 7999999887777776531
Q ss_pred HHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHH
Q psy18164 361 PVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLK 440 (1212)
Q Consensus 361 ~~v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~ 440 (1212)
.+|+. ++.+ . ....++++++++|++++.. ..++ ...+|||||++|++.||+++++
T Consensus 62 --------~~p~~-------~g~i----~--~~~~~~~i~~~~l~~~~~~--~~~~--~~~~vitvP~~~~~~~r~~~~~ 116 (344)
T 1jce_A 62 --------IRPMR-------DGVI----A--DYTVALVMLRYFINKAKGG--MNLF--KPRVVIGVPIGITDVERRAILD 116 (344)
T ss_dssp --------ECCEE-------TTEE----S--SHHHHHHHHHHHHHHHHTS--CCSC--CCEEEEEECTTCCHHHHHHHHH
T ss_pred --------EecCC-------CCee----C--ChHHHHHHHHHHHHHHhhc--cccC--CCeEEEEECCCCCHHHHHHHHH
Confidence 12221 1111 0 1124677777777776553 1223 4789999999999999999999
Q ss_pred HHHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEec
Q psy18164 441 AGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGY 520 (1212)
Q Consensus 441 Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~ 520 (1212)
|++.||++++.+++||+|||++|+.... . +..+||||+||||||+++++.. .+ + ..+
T Consensus 117 a~~~aG~~~~~li~ep~Aaa~~~~~~~~-----~-~~~~lVvDiGggttdvsv~~~~--------------~~--~-~~~ 173 (344)
T 1jce_A 117 AGLEAGASKVFLIEEPMAAAIGSNLNVE-----E-PSGNMVVDIGGGTTEVAVISLG--------------SI--V-TWE 173 (344)
T ss_dssp HHHHTTCSEEEEEEHHHHHHHHTTCCTT-----S-SSCEEEEEECSSCEEEEEEETT--------------EE--E-EEE
T ss_pred HHHHcCCCeEeccCCHHHHHHhcCCCCC-----C-CceEEEEEeCCCeEEEEEEEcC--------------CE--E-eeC
Confidence 9999999999999999999999987532 1 5789999999999999999842 11 1 245
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCce------eEEEE--eecccCcceE
Q psy18164 521 DRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNE------HFAQI--EGLIDEIDFK 592 (1212)
Q Consensus 521 d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~------~~i~i--e~l~~~~d~~ 592 (1212)
+..+||++||+.|++++.++|.. ++. ...||++|+.|+.... ..+.+ ..+.++.++.
T Consensus 174 ~~~lGG~~id~~l~~~l~~~~~~------~~~---------~~~ae~~K~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 238 (344)
T 1jce_A 174 SIRIAGDEMDEAIVQYVRETYRV------AIG---------ERTAERVKIEIGNVFPSKENDELETTVSGIDLSTGLPRK 238 (344)
T ss_dssp EESCSHHHHHHHHHHHHHHHHCE------ECC---------HHHHHHHHHHHCBCSCCHHHHHCEEEEEEEETTTTEEEE
T ss_pred CCCccChhHHHHHHHHHHHHhCc------ccC---------HHHHHHHHHHHhccCccccCCcceEEEeccccCCCCcee
Confidence 67899999999999999988753 121 4679999999997642 23444 3456777889
Q ss_pred EEEeHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCc-cEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhh
Q psy18164 593 LLVTRAEFEALNEDLFDRVGYPVEQALKSSAVP--MDVI-SQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALG 669 (1212)
Q Consensus 593 ~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~--~~~i-~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~G 669 (1212)
++|+|++|+++++|+++++.++|+++|+.++.. .+.+ +.|+|+||+|++|.|++.|++.|+.++....||++|||+|
T Consensus 239 ~~i~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~~~~~v~~~~~p~~ava~G 318 (344)
T 1jce_A 239 LTLKGGEVREALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGISVIRSEEPLTAVAKG 318 (344)
T ss_dssp EEEEHHHHHHHTHHHHHHHHHHHHHHHHTSCHHHHHHHHHHCEEEESGGGCSBTHHHHHHHHHSSCEEECSSTTTHHHHH
T ss_pred EEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCchhccchhhCcEEEECccccchHHHHHHHHHHCCCccccCChHHHHHHH
Confidence 999999999999999999999999999988632 2234 6899999999999999999999998888889999999999
Q ss_pred HHHHHHhhc
Q psy18164 670 AVYKAADLS 678 (1212)
Q Consensus 670 Aa~~aa~ls 678 (1212)
|+++|+.++
T Consensus 319 aa~~a~~~~ 327 (344)
T 1jce_A 319 AGMVLDKVN 327 (344)
T ss_dssp HHHGGGCHH
T ss_pred HHHHHhChH
Confidence 999998766
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-35 Score=363.53 Aligned_cols=220 Identities=25% Similarity=0.401 Sum_probs=193.1
Q ss_pred ceEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEecCceeEccchhhhhccCCCChHHHHHHHhCCCCCCHH
Q psy18164 36 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 115 (1212)
Q Consensus 36 ~~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~~ 115 (1212)
|++||||||||||+||++.+| .+++++|..|++.+||+|+|.++.++||..|+.++..+|.++++++||+||+.++++.
T Consensus 2 m~~iGIDlGTtns~va~~~~g-~~~ii~n~~g~r~tPS~Vaf~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~ 80 (675)
T 3d2f_A 2 STPFGLDLGNNNSVLAVARNR-GIDIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTSNIKNTVANLKRIIGLDYHHPD 80 (675)
T ss_dssp CCCEEEECCSSEEEEEEEETT-EEEEECCTTSCSSEECCEEECSSSEEETHHHHHHHTTCGGGEECCHHHHTTCBTTCTT
T ss_pred CcEEEEEcCCCcEEEEEEECC-eeEEEECCCCCcccceEEEECCCcEEecHHHHHhhhhChHhHHHHHHHHhCCCCCcHH
Confidence 568999999999999999887 5789999999999999999998899999999999999999999999999999999999
Q ss_pred HHHHHhcCCceeeeccCCCceEEEEc--CC-cceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHH
Q psy18164 116 VQLFKSRFPYYDIVADEERGTIVFKT--ND-NELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSML 192 (1212)
Q Consensus 116 ~~~~~~~~~~~~v~~~~~~~~~~~~~--~~-~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~ 192 (1212)
++...+++||. ++.. .++.+.+.+ .+ .+.++|+++++++|++|++.|+.++|.++.++|||||++|++.||++++
T Consensus 81 v~~~~~~~p~~-v~~~-~~g~~~~~~~~~g~~~~~speei~a~~L~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~ 158 (675)
T 3d2f_A 81 FEQESKHFTSK-LVEL-DDKKTGAEVRFAGEKHVFSATQLAAMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIA 158 (675)
T ss_dssp HHHHHTTCCSE-EEEC-TTSBEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHCSCCCEEEEEECTTCCHHHHHHHH
T ss_pred HHHHHhhCCee-EEEc-CCCceEEEEEeCCCCceEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHH
Confidence 99999999985 4432 234444433 22 4689999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceEEEecchhHHHHHhhhhcccCCC--CCCCeEEEEEecCCceEEEEEEEEEeeccccccc
Q psy18164 193 KAGELAGLKVLQLMNDYTAVALNYGIFKRKDFN--ETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGM 259 (1212)
Q Consensus 193 ~Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~--~~~~~~vlV~D~GggT~Dvsvv~~~~~~~~~~~~ 259 (1212)
+||+.||++++++++||+|||++|++.+.. +. ...+.++||||+||||||+||+++..|...+++.
T Consensus 159 ~Aa~~AGl~~~~li~EP~AAAlaygl~~~~-~~~~~~~~~~vlV~DlGGGT~Dvsv~~~~~g~~~V~a~ 226 (675)
T 3d2f_A 159 DAARIAGLNPVRIVNDVTAAGVSYGIFKTD-LPEGEEKPRIVAFVDIGHSSYTCSIMAFKKGQLKVLGT 226 (675)
T ss_dssp HHHHHTTCEEEEEEEHHHHHHHHHHHHCSC-CCCSSSCCEEEEEEEECSSCEEEEEEEEETTEEEEEEE
T ss_pred HHHHHcCCceEEEEcchHHHHHHHhhhccc-cccccCCCcEEEEEEcCCCcEEEEEEEecCCeEEEEEE
Confidence 999999999999999999999999876531 11 1346799999999999999999999877765544
|
| >4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-34 Score=354.67 Aligned_cols=214 Identities=29% Similarity=0.411 Sum_probs=191.5
Q ss_pred eEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEe-cCceeEccchhhhhccCCCChHHHHHHHhCCCCCCHH
Q psy18164 37 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 115 (1212)
Q Consensus 37 ~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~-~~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~~ 115 (1212)
.+|||||||||||||++.+| .++++.|..|.+.+||+|+|. ++.+++|..|+.++..+|.++++++|||||+.++++.
T Consensus 3 ~viGIDlGTT~S~Va~~~~g-~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~ 81 (605)
T 4b9q_A 3 KIIGIDLGTTNSCVAIMDGT-TPRVLENAEGDRTTPSIIAYTQDGCTLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEE 81 (605)
T ss_dssp CEEEEECCSSEEEEEEEETT-EEEECCCTTSCSSEECCEEECTTSCEEESHHHHHTTTTCGGGEECCGGGTTTCBTTSHH
T ss_pred cEEEEEcCCCcEEEEEEECC-EEEEEECCCCCcccceEEEEeCCCcEEecHHHHHHHHhCCCcEehhhHHhhCCCCCCHH
Confidence 48999999999999999877 478999999999999999996 5689999999999999999999999999999999999
Q ss_pred HHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHHH
Q psy18164 116 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 195 (1212)
Q Consensus 116 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~Aa 195 (1212)
++...+++||..+.. .++.+.+.+ .++.++|+++++++|++|++.++.++|.++.++|||||++|++.||+++++||
T Consensus 82 v~~~~~~~p~~~~~~--~~g~~~~~~-~~~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qr~a~~~Aa 158 (605)
T 4b9q_A 82 VQRDVSIMPFKIIAA--DNGDAWVEV-KGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAG 158 (605)
T ss_dssp HHHHHTTCSSEEEEC--TTSBEEEEE-TTEEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHH
T ss_pred HHHHhhcCCeEEEEc--CCCceEEEE-CCEEECHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 999999999864333 345555554 46789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEe----eccccccc
Q psy18164 196 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQV----VKTKERGM 259 (1212)
Q Consensus 196 ~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~----~~~~~~~~ 259 (1212)
+.|||+++++++||+|||++|++.... .+.++||||+||||||+|++++.. +...+++.
T Consensus 159 ~~AGl~v~~li~EP~AAAlaygl~~~~-----~~~~vlV~DlGGGT~Dvsi~~~~~~~~~~~~evla~ 221 (605)
T 4b9q_A 159 RIAGLEVKRIINEPTAAALAYGLDKGT-----GNRTIAVYDLGGGAFDISIIEIDEVDGEKTFEVLAT 221 (605)
T ss_dssp HHTTCEEEEEEEHHHHHHHHHHTTSCC-----SSEEEEEEEECSSCEEEEEEEEEESSSCEEEEEEEE
T ss_pred HHcCCceEEEeCcHHHHHHHhhhhccC-----CCCEEEEEECCCCeEEEEEEEEecCCCCceEEEEEe
Confidence 999999999999999999999876532 256899999999999999999998 65555443
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-34 Score=350.30 Aligned_cols=216 Identities=31% Similarity=0.501 Sum_probs=190.8
Q ss_pred eEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEecCceeEccchhhhhccCCCChHHHHHHHhCCCCCCHHH
Q psy18164 37 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVV 116 (1212)
Q Consensus 37 ~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~~~ 116 (1212)
.+||||||||||+||++.+| .++++.|..|++++||+|+|.++.++||..|+.++..+|.++++++|||||++++++.+
T Consensus 5 ~~iGIDlGTt~s~va~~~~g-~~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~v 83 (554)
T 1yuw_A 5 PAVGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVV 83 (554)
T ss_dssp CCEEEEECSSEEEEEEECSS-SEEECCCTTSCSEEECCEEECSSCEEETHHHHTTTTTCGGGEECCGGGTTTCCSSCSHH
T ss_pred CEEEEEeCcccEEEEEEECC-EEEEEECCCCCeecceEEEEcCCcEEEcHHHHHhhhhChhhehHhhHHhcCCCCCcHHH
Confidence 47999999999999999877 58999999999999999999988999999999999999999999999999999999999
Q ss_pred HHHHhcCCceeeeccCCCceEEEEcCC-cceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHHH
Q psy18164 117 QLFKSRFPYYDIVADEERGTIVFKTND-NELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 195 (1212)
Q Consensus 117 ~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~Aa 195 (1212)
+..++++||. ++..++...+.+...+ .+.++|+++++++|++|++.++.++|.++.++|||||++|++.||+++++||
T Consensus 84 ~~~~~~~p~~-v~~~~g~~~~~v~~~~~~~~~sp~ei~a~~L~~lk~~ae~~lg~~v~~~VitVPa~f~~~qr~a~~~A~ 162 (554)
T 1yuw_A 84 QSDMKHWPFM-VVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAG 162 (554)
T ss_dssp HHHHTTCSSE-EEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEECTTCCHHHHHHHHHHH
T ss_pred HHHhhcCCeE-EEecCCceEEEEEECCCceEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 9999999985 4444444444443333 4789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEeecccccc
Q psy18164 196 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERG 258 (1212)
Q Consensus 196 ~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~~~~~~~~ 258 (1212)
+.||++++++++||+|||++|+..... ..+..+||||+||||||+|++++..+...+++
T Consensus 163 ~~AGl~~~~li~EP~AAAlay~~~~~~----~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a 221 (554)
T 1yuw_A 163 TIAGLNVLRIINEPTAAAIAYGLDKKV----GAERNVLIFDLGGGTFDVSILTIAAGIFEVKS 221 (554)
T ss_dssp HTTTCEEEEEEEHHHHHHHHTTCSTTC----SSCEEEEEEEECSSCEEEEEEEEETTEEEEEE
T ss_pred HHcCCCeEEEeCcHHHHHHHHHhhccC----CCCcEEEEEEcCCCeEEEEEEEEcCCcEEEEE
Confidence 999999999999999999999875432 12568999999999999999999877655443
|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=348.43 Aligned_cols=205 Identities=31% Similarity=0.458 Sum_probs=184.0
Q ss_pred eEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEe-cCceeEccchhhhhccCCCChHHHHHHHhCCCCCCHH
Q psy18164 37 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 115 (1212)
Q Consensus 37 ~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~-~~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~~ 115 (1212)
.+|||||||||||||++.+| .++++.|..|.+.+||+|+|. ++.++||..|+..+..+|.++++++||+||+.++++.
T Consensus 3 ~viGIDlGTt~s~va~~~~g-~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~t~~~~Kr~iG~~~~d~~ 81 (605)
T 2kho_A 3 KIIGIDLGTTNSCVAIMDGT-TPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEE 81 (605)
T ss_dssp -CEEEECCSSEEEEEEEETT-EEEECCCTTSCSSEECEEEECTTSCEEESHHHHTTTTTCGGGEEECGGGTTTCBSSSTT
T ss_pred CEEEEEcCCcCEEEEEEECC-EEEEEECCCCCcccceEEEEECCCcEEECHHHHHHhhhCCCCEeehhhHhhCCCCCcHH
Confidence 47999999999999999887 578999999999999999994 5789999999999999999999999999999999998
Q ss_pred HHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHHH
Q psy18164 116 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 195 (1212)
Q Consensus 116 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~Aa 195 (1212)
++...+.+||..+... ++.+.+.+ +++.++|+++++++|++|++.|+.++|.++.++|||||++|++.||+++++||
T Consensus 82 v~~~~~~~p~~~~~~~--~g~~~i~~-~g~~~~~~ei~a~~L~~l~~~ae~~l~~~v~~~VitVPa~f~d~qr~a~~~A~ 158 (605)
T 2kho_A 82 VQRDVSIMPFKIIAAD--NGDAWVEV-KGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAG 158 (605)
T ss_dssp HHHHHHHCSSCEEECT--TSBEEEEE-TTEEECHHHHHHHHHHHHHHHHHHHHCSCCCEEEEEECTTCCHHHHHHHHHHH
T ss_pred HHHHhhcCCeEEEECC--CCceEEEE-CCEEEcHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEECCCCCHHHHHHHHHHH
Confidence 9988889998533233 34555555 46789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEE
Q psy18164 196 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQ 250 (1212)
Q Consensus 196 ~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~ 250 (1212)
+.||++++++++||+|||++|++.... .+.++||||+||||||+|++++.
T Consensus 159 ~~AGl~v~~li~EP~AAAlay~l~~~~-----~~~~vlV~DlGGGT~Dvsi~~~~ 208 (605)
T 2kho_A 159 RIAGLEVKRIINEPTAAALAYGLDKGT-----GNRTIAVYDLGGGTFDISIIEID 208 (605)
T ss_dssp HTTTCEEEEEEEHHHHHHHHTTTTSSS-----SEEEEEEEEECSSCEEEEEEEEE
T ss_pred HHcCCceEEEecCHHHHHHHhhhcccC-----CCCEEEEEECCCCeEEEEEEEEE
Confidence 999999999999999999999875431 35689999999999999999998
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=325.38 Aligned_cols=220 Identities=29% Similarity=0.477 Sum_probs=194.4
Q ss_pred CceEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEecCceeEccchhhhhccCCCChHHHHHHHhCCCCCCH
Q psy18164 35 GIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 114 (1212)
Q Consensus 35 ~~~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~ 114 (1212)
.|.+||||||||||+||++.+| .++++.+..|.+++||+|+|.++.++||..|...+..+|.++++++||++|+.++++
T Consensus 22 ~~~viGID~GTt~s~va~~~~g-~~~ii~~~~g~~~~PS~v~~~~~~~~vG~~A~~~~~~~~~~~~~~~Kr~lg~~~~~~ 100 (404)
T 3i33_A 22 SMPAIGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTIFDAKRLIGRKFEDA 100 (404)
T ss_dssp -CCCEEEEECSSEEEEEEEETT-EEEECCCTTSCSSEECCEEECSSCEEETHHHHHTTTTCSTTEECCGGGTTTCCTTSH
T ss_pred cCCEEEEEcCCccEEEEEEECC-eeEEEECCCCCcccceEEEECCCCEEecHHHHHhhHhChhhhHHHHHHHhCCCCCcH
Confidence 4789999999999999999987 478999999999999999999889999999999999999999999999999999999
Q ss_pred HHHHHHhcCCceeeeccCCCceEEEEcCC-cceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHH
Q psy18164 115 VVQLFKSRFPYYDIVADEERGTIVFKTND-NELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLK 193 (1212)
Q Consensus 115 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~ 193 (1212)
.++...+.+||. ++..++...+.+...+ ...++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++
T Consensus 101 ~~~~~~~~~p~~-~~~~~g~~~~~v~~~~~~~~~~~~ei~a~~L~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~~~~ 179 (404)
T 3i33_A 101 TVQSDMKHWPFR-VVSEGGKPKVQVEYKGETKTFFPEEISSMVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKD 179 (404)
T ss_dssp HHHHHHTTCSSE-EEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEECTTCCHHHHHHHHH
T ss_pred HHHHHHhhCCce-EEccCCceEEEEEeCCCceEEcHHHHHHHHHHHHHHHHHHHhccCCCcEEEEECCCCCHHHHHHHHH
Confidence 999999999985 4455555555555433 37899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEeecccccc
Q psy18164 194 AGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERG 258 (1212)
Q Consensus 194 Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~~~~~~~~ 258 (1212)
||+.||++++.+++||+|||++|+...... ...+..+||||+||||+|++++++..+...+++
T Consensus 180 a~~~AGl~~~~li~Ep~AAa~~~~~~~~~~--~~~~~~vlV~D~GgGT~dvsv~~~~~~~~~v~~ 242 (404)
T 3i33_A 180 AGTITGLNVLRIINEPTAAAIAYGLDKKGC--AGGEKNVLIFDLGGGTFDVSILTIEDGIFEVKS 242 (404)
T ss_dssp HHHHHTCEEEEEEEHHHHHHHHTTTTSSCS--SSSCCEEEEEEECSSCEEEEEEEEETTEEEEEE
T ss_pred HHHHcCCCeEEEeccHHHHHHHHHhhcccc--cCCCceEEEEECCCCcEEEEEEEEeCCeEEEEE
Confidence 999999999999999999999998765422 113568999999999999999999877655443
|
| >4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-31 Score=316.70 Aligned_cols=216 Identities=21% Similarity=0.330 Sum_probs=182.6
Q ss_pred CceEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEecCceeEccchhhhhccCCCChHHHHHHHhCCCCCCH
Q psy18164 35 GIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 114 (1212)
Q Consensus 35 ~~~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~ 114 (1212)
.+.+||||||||||+||++.+| .++++.+..|.+++||+|+|.++.++||..|......+|.++++++||++|+.++++
T Consensus 12 ~~~vvGIDlGTt~s~va~~~~g-~~~ii~~~~g~~~~PS~v~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~llg~~~~~~ 90 (409)
T 4gni_A 12 ERVVIGITFGNSNSSIAHTVDD-KAEVIANEDGDRQIPTILSYVDGDEYYGQQAKNFLVRNPKNTVAYFRDILGQDFKSV 90 (409)
T ss_dssp -CCEEEEEECSSEEEEEEEETT-EEEEECCTTSCSSEECEEEEETTEEEEHHHHHHHHHHCGGGEEESCGGGTTCCGGGC
T ss_pred CCcEEEEEcCCCeEEEEEEeCC-ceEEEECCCCCccCceEEEECCCcEEEcHHHHHhhHhChHhhHHHHHHHhCCCccch
Confidence 4679999999999999999655 689999999999999999999999999999999999999999999999999998876
Q ss_pred HHHHHHhcCCceeeeccCCCceEEEEcC-------CcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHH
Q psy18164 115 VVQLFKSRFPYYDIVADEERGTIVFKTN-------DNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIE 187 (1212)
Q Consensus 115 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~-------~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~q 187 (1212)
.++... .++. +.. .++.+.+.+. .++.++|+++++++|++|++.++.+++.++.++|||||++|++.|
T Consensus 91 ~~~~~~--~~~~-~~~--~~g~~~~~v~~~~~~~~~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~vitvPa~~~~~~ 165 (409)
T 4gni_A 91 DPTHNH--ASAH-PQE--AGDNVVFTIKDKAEEDAEPSTLTVSEIATRYLRRLVGAASEYLGKKVTSAVITIPTNFTEKQ 165 (409)
T ss_dssp CCGGGT--TSCC-CEE--ETTEEEEEECCSSCSSCCCEEEEHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHH
T ss_pred hhhhhc--cccc-eec--CCCcEEEEEecCCCCCCcceEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHH
Confidence 544432 2222 222 3455555543 246899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEeeccccccc
Q psy18164 188 RQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGM 259 (1212)
Q Consensus 188 r~~l~~Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~~~~~~~~~ 259 (1212)
|+++++||+.|||+++.+++||+|||++|+.... ....+..+||||+||||+|++++++..+...+++.
T Consensus 166 r~~~~~a~~~AGl~~~~li~Ep~AAa~~~~~~~~---~~~~~~~vlv~D~GgGT~dvsv~~~~~~~~~v~~~ 234 (409)
T 4gni_A 166 KAALIAAAAAADLEVLQLISEPAAAVLAYDARPE---ATISDKIIVVADLGGSRSDVTVLASRSGMYTILAT 234 (409)
T ss_dssp HHHHHHHHHHTTCEEEEEEEHHHHHHHHTTC---------CCEEEEEEEECSSCEEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHcCCCeEEEEcCHHHHHHHHhcccc---cCCCCCEEEEEECCCCceEEEEEEEeCCeEEEEEe
Confidence 9999999999999999999999999999987542 11235789999999999999999999876666543
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=307.94 Aligned_cols=205 Identities=31% Similarity=0.462 Sum_probs=181.3
Q ss_pred eEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEe-cCceeEccchhhhhccCCCChHHHHHHHhCCCCCCHH
Q psy18164 37 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 115 (1212)
Q Consensus 37 ~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~-~~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~~ 115 (1212)
.+||||||||||+||++.+| .++++.+..|.+++||+|+|. ++.++||..|+.....+|.++++++||+||+.++++.
T Consensus 3 ~~vGIDlGTt~s~va~~~~g-~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 81 (383)
T 1dkg_D 3 KIIGIDLGTTNSCVAIMDGT-TPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEE 81 (383)
T ss_dssp CCCEEECCSSEEEEEEEETT-EEEECCCTTSCSEEECEEEECTTSCEEESHHHHTTSTTCGGGEEECGGGTTTCBSCSHH
T ss_pred cEEEEEcCCCCEEEEEEECC-eeEEEECCCCCcccceEEEEECCCCEEECHHHHHhhhhCccceeehhHHhhCCCCCcHH
Confidence 46899999999999999877 578988999999999999995 5788999999999999999999999999999999988
Q ss_pred HHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHHH
Q psy18164 116 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 195 (1212)
Q Consensus 116 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~Aa 195 (1212)
++...+.+|+..+... ++...+.+ +++.++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++|+
T Consensus 82 ~~~~~~~~p~~~~~~~--~~~~~~~~-~g~~~~~~~i~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~~~~a~ 158 (383)
T 1dkg_D 82 VQRDVSIMPFKIIAAD--NGDAWVEV-KGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAG 158 (383)
T ss_dssp HHHHTTTCSSEEEECS--SSBEEEEE-TTEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEECBCTTCCHHHHHHHHHHH
T ss_pred HHHHhhcCCeEEEEcC--CCcEEEEE-CCEEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 8888888898533333 34444444 45789999999999999999999999988899999999999999999999999
Q ss_pred HHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEE
Q psy18164 196 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQ 250 (1212)
Q Consensus 196 ~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~ 250 (1212)
+.||++++.+++||+|||++|+.... ..+..+||||+||||+|++++++.
T Consensus 159 ~~aGl~~~~li~Ep~Aaa~~~~~~~~-----~~~~~~lVvD~Gggttdvsv~~~~ 208 (383)
T 1dkg_D 159 RIAGLEVKRIINEPTAAALAYGLDKG-----TGNRTIAVYDLGGGTFDISIIEID 208 (383)
T ss_dssp HHTTCEESCCCBHHHHHHHHHTCCC------CCEEEEEEEEECSSCEEEEEEEEE
T ss_pred HHcCCceEEEeccHHHHHHHHHhccC-----CCCcEEEEEEcCCCeEEEEEEEEE
Confidence 99999999999999999999986542 135689999999999999999998
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-29 Score=306.92 Aligned_cols=186 Identities=32% Similarity=0.519 Sum_probs=166.5
Q ss_pred eEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEecCceeEccchhhhhccCCCChHHHHHHHhCCCCCCHHH
Q psy18164 37 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVV 116 (1212)
Q Consensus 37 ~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~~~ 116 (1212)
.+||||||||||+||++.+| .+++++|..|.+.+||+|+|.++.++||..|+.....+| ++++++||+||+.+.
T Consensus 3 ~~iGIDlGTt~s~va~~~~g-~~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~p-~~~~~~Kr~lg~p~~---- 76 (509)
T 2v7y_A 3 KIIGIDLGTTNSCVAVLEGG-EVKVIPNPEGNRTTPSVVAFKNGERLVGEVAKRQAITNP-NTIISIKRHMGTDYK---- 76 (509)
T ss_dssp CEEEEEECSSEEEEEEEETT-EEEECCCTTSCSSEECEEEESSSSEEESHHHHTTTTTCS-SEEECGGGTTTSCCC----
T ss_pred CEEEEEcCCceEEEEEEECC-EEEEEECCCCCcccceEEEECCCcEEECHHHHHhHHhCC-CcHHHHHHhcCCCcE----
Confidence 48999999999999999887 478999999999999999998888999999999999999 999999999997322
Q ss_pred HHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHHHH
Q psy18164 117 QLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGE 196 (1212)
Q Consensus 117 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~Aa~ 196 (1212)
+ .+ ++..++|+++.+++|++|++.++.+++.++.++|||||++|++.||+++++|++
T Consensus 77 --------------------~--~~-~g~~~~~~ei~a~~L~~l~~~ae~~l~~~~~~~VitvPa~~~~~qr~a~~~a~~ 133 (509)
T 2v7y_A 77 --------------------V--EI-EGKQYTPQEISAIILQYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGR 133 (509)
T ss_dssp --------------------E--EE-TTEEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred --------------------E--EE-CCEEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 1 11 345789999999999999999999999999999999999999999999999999
Q ss_pred HcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEeeccccc
Q psy18164 197 LAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKER 257 (1212)
Q Consensus 197 ~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~~~~~~~ 257 (1212)
.||++++++++||+|||++|+.... .+.++||||+||||||++++++..+...++
T Consensus 134 ~AGl~~~~li~Ep~AAAlay~~~~~------~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~ 188 (509)
T 2v7y_A 134 IAGLEVERIINEPTAAALAYGLDKE------EDQTILVYDLGGGTFDVSILELGDGVFEVK 188 (509)
T ss_dssp HTTCEEEEEEEHHHHHHHHTTGGGS------CSEEEEEEEECSSCEEEEEEEEETTEEEEE
T ss_pred HcCCCeEEEecCHHHHHHHHhhccC------CCCEEEEEECCCCeEEEEEEEEcCCeEEEE
Confidence 9999999999999999999987543 357999999999999999999987655544
|
| >4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A | Back alignment and structure |
|---|
Probab=99.95 E-value=7.7e-27 Score=249.68 Aligned_cols=212 Identities=18% Similarity=0.292 Sum_probs=178.4
Q ss_pred EEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccCc---eEEEEEeccCcccCChhhhhccCcee
Q psy18164 687 ITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQIAMLGTKQ 763 (1212)
Q Consensus 687 ~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~~~~~~~~~ 763 (1212)
++.|++||++||++. |+ .+.+||++|+++|++++.+|++..++ +.|.||+| ++... . .+..
T Consensus 2 ~l~DV~p~slGie~~-----gg---~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqG-e~~~~--~-----dn~~ 65 (219)
T 4e81_A 2 LLLDVTPLSLGIETM-----GG---VMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQG-ERKRA--A-----DNKS 65 (219)
T ss_dssp CCCCBCSSCEEEEET-----TT---EEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEES-SCSBG--G-----GSEE
T ss_pred eEEEecCcEEEEEEe-----CC---EEEEEEeCcCcccEeEEEEEEeCCCCCceEEEEEEEc-CCccc--c-----cCCE
Confidence 578999999999997 33 37899999999999999999987553 99999999 76532 2 3566
Q ss_pred eeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccccCCCCCCCCCCc
Q psy18164 764 ISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKTDENEKPI 843 (1212)
Q Consensus 764 i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~~~~~~~~~~~~ 843 (1212)
|++|.|.|+++++++. +.|+|+|.+|.||+|+|++.+ .+|.
T Consensus 66 Lg~f~l~gipp~p~G~-------~~IeVtf~iD~nGiL~V~a~d---------~~tg----------------------- 106 (219)
T 4e81_A 66 LGQFNLDGINPAPRGM-------PQIEVTFDIDADGILHVSAKD---------KNSG----------------------- 106 (219)
T ss_dssp EEEEEEECCCCCSTTC-------SCEEEEEEECTTCCEEEEEEE---------TTTC-----------------------
T ss_pred EEEEEEeCCCCCCCCC-------ceEEEEEEeCCCCCEeeeeec---------cccC-----------------------
Confidence 8899999999886665 789999999999999999884 1110
Q ss_pred ccccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHHHHHHHHHHHHh
Q psy18164 844 NEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKLDS 923 (1212)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~eel~~~~~~l~~ 923 (1212)
++. .+.++ ...+||++|++++++.+++
T Consensus 107 ---------------------------------------------~~~----~i~I~----~~~~Ls~eeI~~m~~~a~~ 133 (219)
T 4e81_A 107 ---------------------------------------------KEQ----KITIK----ASSGLNEDEIQKMVRDAEA 133 (219)
T ss_dssp ---------------------------------------------CEE----EEEEC----TTCSCCHHHHHHHHHHHHH
T ss_pred ---------------------------------------------ccc----eEeee----ccccccHHHHHHHHHHHHH
Confidence 000 12221 1246999999999999999
Q ss_pred HhHHHHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhh
Q psy18164 924 LNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLV 1003 (1212)
Q Consensus 924 l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~~~Kl~eL~~~~ 1003 (1212)
+...|+.++++.+++|.||+|+|++|..|. ++..++++++|+.|...|+++++||+++ ++++|++++++|++++
T Consensus 134 ~~~eD~~~r~~~e~kn~le~~i~~~~~~l~--~~~~~l~~~~k~~i~~~l~~~~~~L~~~----~~~~i~~~~~~L~~~~ 207 (219)
T 4e81_A 134 NAEADRKFEELVQTRNQGDHLLHSTRKQVE--EAGDKLPADDKTAIESALTALETALKGE----DKAAIEAKMQELAQVS 207 (219)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHGGGSCHHHHHHHHHHHHHHHHHHHSS----CHHHHHHHHHHHHHHT
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999995 3888999999999999999999999965 7999999999999999
Q ss_pred HHHHHHHHh
Q psy18164 1004 VPIWERHRE 1012 (1212)
Q Consensus 1004 ~pi~~R~~e 1012 (1212)
+||..|++.
T Consensus 208 ~~i~~~~~~ 216 (219)
T 4e81_A 208 QKLMEIAQQ 216 (219)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHhc
Confidence 999998875
|
| >1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-26 Score=246.85 Aligned_cols=210 Identities=15% Similarity=0.233 Sum_probs=175.3
Q ss_pred EeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccCc---eEEEEEeccCcccCChhhhhccCceeee
Q psy18164 689 KDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQIAMLGTKQIS 765 (1212)
Q Consensus 689 ~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~~~~~~~~~i~ 765 (1212)
.|++||+|||++. |+ .+.+||++|+++|++++.+|++..++ |.|.|||| +... + -.+..|+
T Consensus 1 ~Dv~p~slGie~~-----~g---~~~~li~rnt~iP~~k~~~f~t~~d~Q~~v~i~v~qG-e~~~-~------~~n~~Lg 64 (227)
T 1u00_A 1 MDVIPLSLGLETM-----GG---LVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQG-EREL-V------QDCRSLA 64 (227)
T ss_dssp CCBCSSCEEEEET-----TT---EEEEEECTTCBSSEEEEEEEECSSTTCCCEEEEEEEC-SSSB-G------GGSEEEE
T ss_pred CCcccceEEEEEe-----CC---EEEEEEeCcCccCceEEEEEEecCCCceEEEEEEEec-CCcc-C------CCCCEEE
Confidence 3899999999986 33 37899999999999999999987554 99999999 7643 2 1356788
Q ss_pred eEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccccCCCCCCCCCCccc
Q psy18164 766 KFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKTDENEKPINE 845 (1212)
Q Consensus 766 ~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~~~~~~~~~~~~~~ 845 (1212)
+|.|.|+++++++. ++|+|+|++|.||+|+|++.+ ..+.
T Consensus 65 ~f~l~gi~~~p~G~-------~~I~Vtf~iD~nGiL~V~a~d---------~~tg------------------------- 103 (227)
T 1u00_A 65 RFALRGIPALPAGG-------AHIRVTFQVDADGLLSVTAME---------KSTG------------------------- 103 (227)
T ss_dssp EEEECCCCCCSTTC-------SCEEEEEEECTTCCEEEEEEE---------TTTC-------------------------
T ss_pred EEEEeCCCCCCCCc-------eEEEEEEEECCCCcEEEEeec---------cccc-------------------------
Confidence 99999999875554 689999999999999998873 0000
Q ss_pred ccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHHHHHHHHHHHHhHh
Q psy18164 846 AVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKLDSLN 925 (1212)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~eel~~~~~~l~~l~ 925 (1212)
+.. .++++ ...+||.++++++++++.+|.
T Consensus 104 -------------------------------------------~~~----~i~i~----~~~~Ls~eei~~~~~~~~~~~ 132 (227)
T 1u00_A 104 -------------------------------------------VEA----SIQVK----PSYGLTDSEIASMIKDSMSYA 132 (227)
T ss_dssp -------------------------------------------CEE----EEEEC----CCSCCCHHHHHHHHHHHHHTH
T ss_pred -------------------------------------------ccc----eEEEE----eccCCCHHHHHHHHHHHHhhh
Confidence 000 12222 114599999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhHH
Q psy18164 926 QIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLVVP 1005 (1212)
Q Consensus 926 ~~D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~~~Kl~eL~~~~~p 1005 (1212)
..|+.++++.+++|+||+|||++|++|++ +..++++++|++|...|+++++|||++ ++++|++|+++|+++++|
T Consensus 133 ~~D~~~~e~~e~kn~le~~i~~~~~~l~~--~~~~~~~~~k~~i~~~l~~~~~wl~~~----d~~~~~~~~~~L~~~~~~ 206 (227)
T 1u00_A 133 EQDVKARMLAEQKVEAARVLESLHGALAA--DAALLSAAERQVIDDAAAHLSEVAQGD----DVDAIEQAIKNVDKQTQD 206 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HGGGSCHHHHHHHHHHHHHHHHHTTSS----CHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHh--hhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999953 788999999999999999999999943 589999999999999999
Q ss_pred HHHHHHh
Q psy18164 1006 IWERHRE 1012 (1212)
Q Consensus 1006 i~~R~~e 1012 (1212)
|..|++.
T Consensus 207 i~~r~~~ 213 (227)
T 1u00_A 207 FAARRMD 213 (227)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998753
|
| >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-25 Score=260.89 Aligned_cols=231 Identities=17% Similarity=0.161 Sum_probs=168.7
Q ss_pred eeeHHHHHHHHHHHHHHHHHHHcCCccceEE--EecCCCCCHHHHHHHHHHHHHc--------C------CCeeeeechh
Q psy18164 393 LYHVEELVAMLLHKAREYASVSAGQVINEAV--IIVPGYFNQIERQSMLKAGELA--------G------LKVLQLMNDY 456 (1212)
Q Consensus 393 ~~~~eel~a~~L~~lk~~a~~~~~~~i~~~V--ItVP~~f~~~qR~al~~Aa~~A--------G------l~~~~li~Ep 456 (1212)
.+.+++..+|++..|+..++.....+ .++| |+||++|+..||+++++|+..+ | ++.+.+++||
T Consensus 94 ~~~~~~~~~ll~~~l~~~~~~~~~~~-~~vvL~i~vP~~~~~~er~a~~~~~~~~~~~v~~~~G~~~~i~v~~v~li~Ep 172 (346)
T 2fsj_A 94 RLASKEAFPLIAAALWESGIHNDGSP-VDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQG 172 (346)
T ss_dssp CTTSTTTHHHHHHHHHHHCCCC---C-EEEEEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEEETT
T ss_pred cccChhHHHHHHHHHHHhhhccCCCc-eEEEEcccCCHHHHHHHHHHHHHHHcCCCcEEEeCCCceEEEEEEEEEEEccH
Confidence 34457778888888887653222333 4699 9999999999999999998776 4 3558899999
Q ss_pred HHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHH
Q psy18164 457 TAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDF 536 (1212)
Q Consensus 457 tAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~ 536 (1212)
+|||++| ... ..+.+. ..+++|||+||||||++++++. .| . .+....++..+||.+|++.|+++
T Consensus 173 ~AAa~~~-l~~-~~~~~~-~~~vlVvDIGgGTtDv~vi~~~------~g------~-~v~~~s~~~~lGg~~i~~~I~~~ 236 (346)
T 2fsj_A 173 VGAALYL-LNQ-GIIEQQ-PGYGVVIDVGSRTTDVLTINLM------DM------E-PVVELSFSLQIGVGDAISALSRK 236 (346)
T ss_dssp HHHHHHH-HHH-TSSCCC-SSEEEEEEECSSCEEEEEEETT------TT------E-ECGGGCEEESCCHHHHHHHHHHH
T ss_pred HHHHHHh-hcc-cccccc-CCcEEEEECCCCcEEEEEEEec------CC------E-EEeecCCCcchhHHHHHHHHHHH
Confidence 9999998 221 112212 4789999999999999999853 12 3 34444566789999999999999
Q ss_pred HHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEEEeecccCcceEEEEeHHHH-HHHHHHHHHHHHHHH
Q psy18164 537 LGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEF-EALNEDLFDRVGYPV 615 (1212)
Q Consensus 537 l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~~d~~~~itR~ef-e~l~~~l~~~i~~~i 615 (1212)
+.+++... . ++. ...++ ... .+.+ .+. .++++++ +++++++++++.+.|
T Consensus 237 i~~~~g~~--~--~i~---------~~~~e-------~~~--~~~~----~g~----~~~~~~i~~~~i~~~~~~i~~~i 286 (346)
T 2fsj_A 237 IAKETGFV--V--PFD---------LAQEA-------LSH--PVMF----RQK----QVGGPEVSGPILEDLANRIIENI 286 (346)
T ss_dssp HHHHHCCC--C--CHH---------HHHHH-------TTS--CEEE----TTE----EECSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCC--c--CCC---------HHHHh-------cCC--eEeE----CCc----cCCHHHHHHHHHHHHHHHHHHHH
Confidence 88877430 0 111 11122 011 1222 222 3569999 999999999999999
Q ss_pred HHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCc-c-cCCCCchhHHHhhHHHHHH
Q psy18164 616 EQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVE-L-SKNLNTDEAAALGAVYKAA 675 (1212)
Q Consensus 616 ~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~-i-~~~~n~deaVA~GAa~~aa 675 (1212)
+++|+++ .++++.|+|+||++++ +++.|++.|+.. + ....||++|+|+|+..++.
T Consensus 287 ~~~l~~~---~~~i~~IvL~GGga~l--l~~~l~~~~~~~~i~~~~~~P~~ava~G~~~~~~ 343 (346)
T 2fsj_A 287 RLNLRGE---VDRVTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFANALGYRDAAE 343 (346)
T ss_dssp HHHHGGG---GGGEEEEEEESTTHHH--HGGGGGGGSTTCBCCCCTTTTTTHHHHHHHHHHH
T ss_pred HHHHHhh---hhcccEEEEECCcHHH--HHHHHHHHCcCcEEeccCCCcHHHHHHHHHHHHh
Confidence 9999876 5678999999999999 999999999832 1 2267999999999998764
|
| >2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-24 Score=254.31 Aligned_cols=318 Identities=18% Similarity=0.122 Sum_probs=204.7
Q ss_pred ceEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEecCcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCHH
Q psy18164 283 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 362 (1212)
Q Consensus 283 ~~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~~ 362 (1212)
-.++|||+||+++++++++.| .+.+ +..|.+.+|+.+ +.++ ...++..+...+|+++++. .
T Consensus 13 ~~~vgiDiGt~~i~~~~~~~~-~~~i--~~~g~~~~ps~~-~~~g-----------~i~d~~~~~~~ik~~~~~~-~--- 73 (377)
T 2ych_A 13 VEALGLEIGASALKLVEVSGN-PPAL--KALASRPTPPGL-LMEG-----------MVAEPAALAQEIKELLLEA-R--- 73 (377)
T ss_dssp CCCEEEEECSSEEEEEEEETT-TTEE--EEEEEEECCTTS-EETT-----------EESCHHHHHHHHHHHHHHH-T---
T ss_pred CceEEEEeCCCeEEEEEEeCC-ceEE--EEEEeEECCCCc-ccCC-----------CcCCHHHHHHHHHHHHHHc-C---
Confidence 358999999999999999866 4433 344555666643 2222 2356677888888888751 0
Q ss_pred HHhhhhcCCceeeecCC-CcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHH-------
Q psy18164 363 VQLFKSRFPYYDIVADE-ERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIE------- 434 (1212)
Q Consensus 363 v~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~q------- 434 (1212)
. ......+.-.+ ..-...+.. ..++++++-..+ +..++.+.+.++.++||.+|. .+.+
T Consensus 74 ---~--~~~~v~~~i~~~~~~~~~~~~---~~v~~~el~~~i----~~ea~~~~~~~~~~~vid~~~--~~~~~~~~~~~ 139 (377)
T 2ych_A 74 ---T--RKRYVVTALSNLAVILRPIQV---PKMPLKEMEEAV----RWEAERYIPFPIDEVVLDFAP--LTPLSEVQEGE 139 (377)
T ss_dssp ---C--CCCEEEEEECGGGCEEEEEEE---ECCCHHHHHHHH----HHHHGGGCSSCC-CEEEEEEE--SSCGGGSCTTS
T ss_pred ---C--CcceEEEEecCCcEEEEEEEC---CCCCHHHHHHHH----HHHHhhcCCCChhHceEEEEE--eCCCCCCCCcc
Confidence 0 00000011111 010111111 357788876543 446777888899999999973 3222
Q ss_pred -------------HHHHHHHHHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeec
Q psy18164 435 -------------RQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKT 501 (1212)
Q Consensus 435 -------------R~al~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~ 501 (1212)
.+++++|++.|||++..++.||+|||++|+..... +. +..++|||+||||||+++++-
T Consensus 140 ~~~v~~va~~~~~v~~~~~~~~~aGl~~~~i~~ep~Aaa~~~~~~~~~---~~-~~~~~vvDiGggttdi~i~~~----- 210 (377)
T 2ych_A 140 QVQVMVAAARQEAVAGVLEALRGAGLVPVVLDVKPFAGLYPLEARLAE---EP-DRVFLVLDIGAESTSLVLLRG----- 210 (377)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHHTTCEEEEEEEHHHHTTGGGHHHHHT---ST-TCEEEEEEECSSCEEEEEEET-----
T ss_pred eeEEEEEEecHHHHHHHHHHHHHCCCceEEEecchHHHHHHHHhhccc---cc-CCeEEEEEECCCcEEEEEEEC-----
Confidence 38999999999999999999999999999754321 12 578999999999999999972
Q ss_pred ccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCceeEEE
Q psy18164 502 KERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQ 581 (1212)
Q Consensus 502 ~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~~~i~ 581 (1212)
| .+ ...++..+||.+||..|++. +.- + +.+||++|+.++........
T Consensus 211 ---g------~~---~~~~~~~~GG~~i~~~i~~~----~~~------~-----------~~~aE~~K~~~~~~~~~~~~ 257 (377)
T 2ych_A 211 ---D------KP---LAVRVLTLSGKDFTEAIARS----FNL------D-----------LLAAEEVKRTYGMATLPTED 257 (377)
T ss_dssp ---T------EE---EEEEEESCSHHHHHHHHHHH----TTC------C-----------HHHHHHHHHHTC--------
T ss_pred ---C------EE---EEEEeeechHHHHHHHHHHH----hCC------C-----------HHHHHHHHhhcccccccccc
Confidence 3 22 12355789999999999873 211 1 45799999988754321111
Q ss_pred EeecccCcceEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCC
Q psy18164 582 IEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSS--AVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKN 659 (1212)
Q Consensus 582 ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a--~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~ 659 (1212)
.+..++-.+....++|++|++++++.++++...|++.|+.. +.....++.|+|+||++++|.+++.|++.||.++...
T Consensus 258 ~~~~i~~~~~~~~i~~~~~~~~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~l~~~v~~~ 337 (377)
T 2ych_A 258 EELLLDFDAERERYSPGRIYDAIRPVLVELTQELRRSLEFFRIQLEEASPEVGYLLGGGSKLRGLASLLTDTLGVNLEPV 337 (377)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCSEEEEESGGGGSTTHHHHHHHHHTSEEEEC
T ss_pred cccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCEEEEECccccchhHHHHHHHHhCCCeEec
Confidence 11111111244689999999999999999999999999863 5666789999999999999999999999999533221
Q ss_pred --------------------CCchhHHHhhHHHHHH
Q psy18164 660 --------------------LNTDEAAALGAVYKAA 675 (1212)
Q Consensus 660 --------------------~n~deaVA~GAa~~aa 675 (1212)
.+|..++|.|+|+++.
T Consensus 338 ~P~~~v~~~~~~~~~~~l~~~~p~~a~a~Glal~~~ 373 (377)
T 2ych_A 338 NPWEAVAVDPKRFESEQLQEIGPEFAVALGLALRGV 373 (377)
T ss_dssp CGGGGSBCCTTTSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CchhhcccCcccCCHHHHHhhhHHHHHHHHHHHcCC
Confidence 1344567888888764
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.9e-23 Score=232.98 Aligned_cols=203 Identities=17% Similarity=0.246 Sum_probs=173.6
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHHHHHcCCCeeeeechhHHHHHhhcccccccCCCCCC
Q psy18164 397 EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNP 476 (1212)
Q Consensus 397 eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~ 476 (1212)
.+....+|+++++.++...+..+..+|+++|++|+..+|+++.++++.+|+++..++.||+|++++|+..
T Consensus 70 ~~~~~~~l~~~~~~~~~~~~~~~~~~v~tvp~~~~~~~~~~~~~~~~~~g~~~~~i~~e~~A~a~~~~~~---------- 139 (272)
T 3h1q_A 70 YIGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPVAAARALGIN---------- 139 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCCEEEEECCSCC---CTTHHHHHHHHTTCEEEEEECHHHHHHHHHTCS----------
T ss_pred HHHHHHHHHHHHHHHHHhcCCccCeEEEEcCCCCCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHHcCC----------
Confidence 3556788999999998888888899999999999999999999999999999999999999999988652
Q ss_pred eEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHH
Q psy18164 477 VHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPR 556 (1212)
Q Consensus 477 ~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~r 556 (1212)
..+|+|+|||||+++++.- | .+. ...+..+||.+||..|.+++. . +
T Consensus 140 -~~~viDiGggst~~~~~~~--------g------~~~---~~~~~~~Gg~~~~~~l~~~l~----~------~------ 185 (272)
T 3h1q_A 140 -DGIVVDIGGGTTGIAVIEK--------G------KIT---ATFDEPTGGTHLSLVLAGSYK----I------P------ 185 (272)
T ss_dssp -SEEEEEECSSCEEEEEEET--------T------EEE---EECCBSCCHHHHHHHHHHHHT----C------C------
T ss_pred -CEEEEEECCCcEEEEEEEC--------C------EEE---EEecCCCcHHHHHHHHHHHhC----C------C------
Confidence 1599999999999999861 3 221 346778999999999988763 0 1
Q ss_pred HHHHHHHHHHHhhhhccCCceeEEEEeecccCcceEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEc
Q psy18164 557 AVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVG 636 (1212)
Q Consensus 557 a~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvG 636 (1212)
...|+++|+.++ ++++|++++.++++++...+.+.++..+ +++.|+|+|
T Consensus 186 -----~~~ae~~k~~~~----------------------~~~~~~~~~~~~~~~i~~~i~~~l~~~~----~~~~ivL~G 234 (272)
T 3h1q_A 186 -----FEEAETIKKDFS----------------------RHREIMRVVRPVIEKMALIVKEVIKNYD----QTLPVYVVG 234 (272)
T ss_dssp -----HHHHHHHHHSST----------------------THHHHHHHHHHHHHHHHHHHHHHTTTSC----SSCCEEEES
T ss_pred -----HHHHHHHHHhcC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCEEEEEC
Confidence 356888888876 6899999999999999999999998764 478999999
Q ss_pred CCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHH
Q psy18164 637 AGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKA 674 (1212)
Q Consensus 637 GssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~a 674 (1212)
|++++|.+++.|++.||.++..+.||++++|+|||++|
T Consensus 235 G~a~~~~l~~~l~~~l~~~v~~~~~p~~a~a~Gaal~a 272 (272)
T 3h1q_A 235 GTAYLTGFSEEFSRFLGKEVQVPIHPLLVTPLGIALFG 272 (272)
T ss_dssp GGGGSTTHHHHHHHHHSSCCBCCSSGGGHHHHHHHTTC
T ss_pred CccchhhHHHHHHHHhCCCccccCChHHHHHHHHHhcC
Confidence 99999999999999999988889999999999999865
|
| >1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.8e-23 Score=245.73 Aligned_cols=227 Identities=13% Similarity=0.071 Sum_probs=165.1
Q ss_pred cceEEEecCCCCCHHHHHHHHHHH-HHcCCCeeeeechhHHHHHh-hcccccccCCCCCCeEEEEEEcCCCceeEEEEEE
Q psy18164 419 INEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALN-YGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSY 496 (1212)
Q Consensus 419 i~~~VItVP~~f~~~qR~al~~Aa-~~AGl~~~~li~EptAaAl~-y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~ 496 (1212)
...+|||+|++|+..+|+++.+++ +.+|++.+.+++||+|||++ |... .+... ..+.||||+|+|+||++++.
T Consensus 107 ~~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~l~~ep~aa~~a~~~~~---~~~~~-~~~glVvDiG~gtt~v~~v~- 181 (418)
T 1k8k_A 107 DHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSR---QVGER-TLTGTVIDSGDGVTHVIPVA- 181 (418)
T ss_dssp GCCEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGST---TCCSC-CCCEEEEEESSSCEEEEEEE-
T ss_pred CCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCEEEEechHHHHhhhhhccc---ccCCC-CCeEEEEEcCCCceEEEEeE-
Confidence 357999999999999999999999 88999999999999999987 5221 11111 22679999999999999985
Q ss_pred EeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCc
Q psy18164 497 QVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANN 576 (1212)
Q Consensus 497 ~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~ 576 (1212)
.| ..+.....+..+||++||..|.++|.+++.. ..... -...++++|+.++...
T Consensus 182 -------~G-------~~~~~~~~~~~lGG~~lt~~l~~~l~~~~~~-----~~~~~-------~~~~~e~iK~~~~~v~ 235 (418)
T 1k8k_A 182 -------EG-------YVIGSCIKHIPIAGRDITYFIQQLLRDREVG-----IPPEQ-------SLETAKAVKERYSYVC 235 (418)
T ss_dssp -------TT-------EECGGGCEEESCSHHHHHHHHHHHHHTTCCC-----CCGGG-------HHHHHHHHHHHHCCCC
T ss_pred -------CC-------EEcccceEEEeCcHHHHHHHHHHHHHhcCCC-----CCCHH-------HHHHHHHHHHhhchhc
Confidence 24 1122222456899999999999999866432 11111 1245677777665321
Q ss_pred -----------------eeEEEEeecccCcceEEEEeHHHH---HHHHHHH------HHHHHHHHHHHHHhcC--CCCCC
Q psy18164 577 -----------------EHFAQIEGLIDEIDFKLLVTRAEF---EALNEDL------FDRVGYPVEQALKSSA--VPMDV 628 (1212)
Q Consensus 577 -----------------~~~i~ie~l~~~~d~~~~itR~ef---e~l~~~l------~~~i~~~i~~~L~~a~--~~~~~ 628 (1212)
...+.++....+..+.++|++++| |.+++|. +..+.++|.++|..+. +..+.
T Consensus 236 ~~~~~e~~~~~~~~~~~~~~~~lpd~~~~~~~~i~l~~erf~~~E~lF~P~~~~~~~~~~i~~~i~~si~~~~~~~~~~l 315 (418)
T 1k8k_A 236 PDLVKEFNKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPL 315 (418)
T ss_dssp SCHHHHHHHHHHSGGGTCEEEEEECTTTCCEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCGGGTTHH
T ss_pred ccHHHHHHhhcccccccceeEECCCCCCCcccEEEeChHHhhCcHhhCCCccCCCCCCCCHHHHHHHHHHcCCHHHHHHH
Confidence 134556555555667899999999 5555553 2568899999998875 44556
Q ss_pred ccEEEEEcCCcCCHHHHHHHHHHhCC------------------------cccCCCCchhHHHhhHHHHHHh
Q psy18164 629 ISQVILVGAGTRVPKVQEKITKVVGV------------------------ELSKNLNTDEAAALGAVYKAAD 676 (1212)
Q Consensus 629 i~~ViLvGGssriP~Vq~~l~~~fg~------------------------~i~~~~n~deaVA~GAa~~aa~ 676 (1212)
++.|+|+||+|++|.+++.|++.++. ++..+.++..++.+||+++|..
T Consensus 316 ~~~IvL~GG~s~~pg~~~rl~~el~~~~~~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilasl 387 (418)
T 1k8k_A 316 YKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLAST 387 (418)
T ss_dssp HHCEEEESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTCTTHHHHHHHHHTTS
T ss_pred HhceEEeCCccccccHHHHHHHHHHHhhccccccccccccccCCCCceeEEEeCCCccccceeHhHHHHHcC
Confidence 78999999999999999999877652 1223456789999999999973
|
| >2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-22 Score=237.63 Aligned_cols=306 Identities=12% Similarity=0.131 Sum_probs=194.3
Q ss_pred ceEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceE-EEEEecCcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCH
Q psy18164 283 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPT-LVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 361 (1212)
Q Consensus 283 ~~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS-~V~f~~~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~ 361 (1212)
...|+||+||.++++++...+.|.-++.+..+..+.++ .+.+..+..++|++|... +.. ..+
T Consensus 5 ~~~ivID~Gs~~~k~G~~~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~vG~~a~~~----~~~--~~~----------- 67 (375)
T 2fxu_A 5 TTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK----RGI--LTL----------- 67 (375)
T ss_dssp CCCEEEEECSSEEEEEETTCSSCSEEEECCEEEECTTTC-------CCEEHHHHHHH----TTS--EEE-----------
T ss_pred CceEEEECCCCeEEEEECCCCCCceeeccccccccccccccCCCCCCeEechhHhhc----Ccc--cce-----------
Confidence 35689999999999999876656545433333322222 122223456788888653 100 000
Q ss_pred HHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCc--cceEEEecCCCCCHHHHHHHH
Q psy18164 362 VVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQV--INEAVIIVPGYFNQIERQSML 439 (1212)
Q Consensus 362 ~v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~--i~~~VItVP~~f~~~qR~al~ 439 (1212)
.+|. .+|..... +.+..+++|+.. ..++.. -..+|||+|++++..+|+++.
T Consensus 68 -------~~Pi----------------~~G~i~d~-d~~e~i~~~~~~---~~L~~~~~~~~vvit~p~~~~~~~r~~~~ 120 (375)
T 2fxu_A 68 -------KYPI----------------EHGIITNW-DDMEKIWHHTFY---NELRVAPEEHPTLLTEAPLNPKANREKMT 120 (375)
T ss_dssp -------ECSE----------------ETTEECCH-HHHHHHHHHHHH---TTSCCCGGGSCEEEEECTTCCHHHHHHHH
T ss_pred -------eccc----------------cCCcccCH-HHHHHHHHHHHH---HhcCCCCcCCcEEEEeCCCCcHHHHHHHH
Confidence 1121 11111111 233444454442 223322 245999999999999999888
Q ss_pred HHH-HHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEE
Q psy18164 440 KAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGV 518 (1212)
Q Consensus 440 ~Aa-~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~ 518 (1212)
+++ +.+|++.+.+++||+|||++|+. ...||||+|+|||+++.+. .| ..+...
T Consensus 121 e~~fe~~g~~~~~~~~e~~aaa~a~g~-----------~~~lVvDiG~gtt~v~~v~--------~G-------~~~~~~ 174 (375)
T 2fxu_A 121 QIMFETFNVPAMYVAIQAVLSLYASGR-----------TTGIVLDSGDGVTHNVPIY--------EG-------YALPHA 174 (375)
T ss_dssp HHHHHTTCCSEEEEEEHHHHHHHHTTC-----------SSEEEEEECSSCEEEEEEE--------TT-------EECGGG
T ss_pred HHHHHhcCcceEEEccchheeeeecCC-----------CeEEEEEcCCCceEEeEeE--------CC-------EEeccc
Confidence 765 88899999999999999999874 2379999999999998774 24 122222
Q ss_pred ecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhc----------------cCCceeEEEE
Q psy18164 519 GYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVL----------------SANNEHFAQI 582 (1212)
Q Consensus 519 ~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~L----------------S~n~~~~i~i 582 (1212)
.....+||++||..|.+++..+... . ....+. ..++++|+.+ +......+.+
T Consensus 175 ~~~~~~GG~~lt~~l~~~l~~~~~~---~--~~~~~~-------~~~e~iK~~~~~v~~~~~~e~~~~~~~~~~~~~~~l 242 (375)
T 2fxu_A 175 IMRLDLAGRDLTDYLMKILTERGYS---F--VTTAER-------EIVRDIKEKLCYVALDFENEMATAASSSSLEKSYEL 242 (375)
T ss_dssp CEEESCCHHHHHHHHHHHHHHHTCC---C--CSHHHH-------HHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEEC
T ss_pred eEEeccCHHHHHHHHHHHHHhcCCC---C--CcHHHH-------HHHHHHHHHHHhhcccHHHHHHhhcccCccCeEEEC
Confidence 3456899999999999999876211 0 100011 2234444433 2222222322
Q ss_pred eecccCcceEEEEeHHHH---HHHHHHH-----HHHHHHHHHHHHHhcC--CCCCCccEEEEEcCCcCCHHHHHHHHHHh
Q psy18164 583 EGLIDEIDFKLLVTRAEF---EALNEDL-----FDRVGYPVEQALKSSA--VPMDVISQVILVGAGTRVPKVQEKITKVV 652 (1212)
Q Consensus 583 e~l~~~~d~~~~itR~ef---e~l~~~l-----~~~i~~~i~~~L~~a~--~~~~~i~~ViLvGGssriP~Vq~~l~~~f 652 (1212)
+ ++ ..+.|+++.| |.+++|. ...+.++|.++|..+. +....++.|+|+||+|++|.++++|.+.+
T Consensus 243 p---dg--~~i~i~~erf~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~IvLtGG~s~~pG~~~rl~~el 317 (375)
T 2fxu_A 243 P---DG--QVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEI 317 (375)
T ss_dssp T---TS--CEEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCSTTHHHHHHHHH
T ss_pred C---CC--CEEEEChhheechHhhCCCccCCCCCCCHHHHHHHHHHhCCHHHHHHHHhCcEeeCCCCCCccHHHHHHHHH
Confidence 2 22 2578899988 3444442 2457888888888763 23344678999999999999999999988
Q ss_pred C--------CcccCCCCchhHHHhhHHHHHH
Q psy18164 653 G--------VELSKNLNTDEAAALGAVYKAA 675 (1212)
Q Consensus 653 g--------~~i~~~~n~deaVA~GAa~~aa 675 (1212)
+ .++....||+.+|++||+++|.
T Consensus 318 ~~~~p~~~~v~v~~~~~p~~~~w~G~si~a~ 348 (375)
T 2fxu_A 318 TALAPSTMKIKIIAPPERKYSVWIGGSILAS 348 (375)
T ss_dssp HHHSCTTCCCCEECCTTTTSHHHHHHHHHHH
T ss_pred HHhCCCCeeEEEEcCCCCCccEEcchHHhhC
Confidence 6 2344567999999999999998
|
| >4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-21 Score=231.14 Aligned_cols=199 Identities=16% Similarity=0.126 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCe
Q psy18164 433 IERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQ 512 (1212)
Q Consensus 433 ~qR~al~~Aa~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~ 512 (1212)
...+.+.+|++.|||++..++.||+|||++|...... ...+++||+||||||++|++ .| .
T Consensus 168 ~~v~n~~~~~~~AGL~v~~lv~ep~Aaa~a~l~~~~~------~~gv~vvDiGggttdisi~~--------~g------~ 227 (419)
T 4a2a_A 168 KVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLTTPEK------DRGVVVVNLGYNFTGLIAYK--------NG------V 227 (419)
T ss_dssp HHHHHHHHHHHTTSCSCEEEEEHHHHHHHHHCCHHHH------HHCEEEEEECSSSEEEEEEE--------TT------E
T ss_pred HHHHHHHHHHHHcCCcEEEEEEHHHHHHHHhhccccc------cCCEEEEEECCCcEEEEEEE--------CC------E
Confidence 4567899999999999999999999999998653322 46799999999999999987 23 3
Q ss_pred EEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccC-----CceeEEEEeeccc
Q psy18164 513 VSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSA-----NNEHFAQIEGLID 587 (1212)
Q Consensus 513 ~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~-----n~~~~i~ie~l~~ 587 (1212)
+. +..+..+||++||+.|+..+. . .+.+||++|+.++. ..+..+.++++.+
T Consensus 228 ~~---~~~~i~~GG~~it~dIa~~l~----~-----------------~~~~AE~iK~~~g~a~~~~~~~~~i~v~~~~~ 283 (419)
T 4a2a_A 228 PI---KISYVPVGMKHVIKDVSAVLD----T-----------------SFEESERLIITHGNAVYNDLKEEEIQYRGLDG 283 (419)
T ss_dssp EE---EEEEESCCHHHHHHHHHHHHT----C-----------------CHHHHHHHHHHHCCSCCTTCCCCEEEEECTTS
T ss_pred EE---EEEecccHHHHHHHHHHHHHC----C-----------------CHHHHHHHHHHhccCcccCCCCceEEEeecCC
Confidence 32 234578999999999987541 1 24679999998864 2344677776543
Q ss_pred CcceEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CCCCccEEEEEcCCcCCHHHHHHHHHHhCCcc--cC-
Q psy18164 588 EIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAV------PMDVISQVILVGAGTRVPKVQEKITKVVGVEL--SK- 658 (1212)
Q Consensus 588 ~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~------~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i--~~- 658 (1212)
+....|+|++|+++++|.++++...|++.|+.++. ....++.|+|+||+|++|.|++.+++.||.++ ..
T Consensus 284 --~~~~~is~~~l~~ii~p~veei~~~V~~~L~~~~~~~p~~~~~~~~~~IvLtGG~s~lpgl~e~~~~~~g~~vri~~~ 361 (419)
T 4a2a_A 284 --NTIKTTTAKKLSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVFKSPVRTGCY 361 (419)
T ss_dssp --CSEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--------TTCEEEESGGGGSTTHHHHHHHHHTSCEEECCG
T ss_pred --ccceEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCEEEEECchhchhhHHHHHHHHHCCCeEEEec
Confidence 46789999999999999999999999999999997 35568999999999999999999999999533 22
Q ss_pred ----C----------CCchhHHHhhHHHHHHhh
Q psy18164 659 ----N----------LNTDEAAALGAVYKAADL 677 (1212)
Q Consensus 659 ----~----------~n~deaVA~GAa~~aa~l 677 (1212)
+ -+|..++|.|.+++++..
T Consensus 362 ~~~~p~~~~~~~~~~~~P~~~t~~Gl~~~~~~~ 394 (419)
T 4a2a_A 362 ANSDRPSIINADEVANDPSFAAAFGNVFAVSEN 394 (419)
T ss_dssp GGSSSCCCBTCHHHHTCGGGHHHHHTTCC----
T ss_pred CCCCchhccCcccccCCchHHHHHHHHHHHhhc
Confidence 1 478999999999988643
|
| >3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=4e-20 Score=191.03 Aligned_cols=162 Identities=19% Similarity=0.295 Sum_probs=127.1
Q ss_pred cceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccCc---eEEEEEeccCcccCChhhhhcc
Q psy18164 683 VKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQIAML 759 (1212)
Q Consensus 683 v~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~~~~~ 759 (1212)
...|.+.|++||+|||++. |+ .+.+||++|+++|++++.+|++..++ +.|.||+| +... + .
T Consensus 17 ~~~f~l~DV~P~slGie~~-----gg---~~~~lI~rnt~iP~~k~~~f~T~~DnQ~~v~I~VyqG-E~~~-~-~----- 80 (182)
T 3n8e_A 17 NLYFQSMDVTPLSLGIETL-----GG---VFTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQG-EREM-A-G----- 80 (182)
T ss_dssp -------CBCSSCEEEECT-----TS---BEEEEECTTCBSSEEEEEEECCSSTTCCCEEEEEEES-SCSB-G-G-----
T ss_pred CCCEEEEEecCCEEEEEEe-----CC---EEEEEEeCCCccCEEEEEEEEECCCCccEEEEEEEEc-Cccc-c-c-----
Confidence 3568899999999999986 33 37899999999999999999987554 99999999 7653 2 2
Q ss_pred CceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccccCCCCCCC
Q psy18164 760 GTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKTDEN 839 (1212)
Q Consensus 760 ~~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~~~~~~~~ 839 (1212)
.+..|++|.|.|+++++++. ++|+|+|++|.||+|+|++.+ .+|.
T Consensus 81 dn~~LG~f~l~gipp~p~G~-------~~IeVtf~iD~nGiL~VsA~d---------~~tg------------------- 125 (182)
T 3n8e_A 81 DNKLLGQFTLIGIPPAPRGV-------PQIEVTFDIDANGIVHVSAKD---------KGTG------------------- 125 (182)
T ss_dssp GSEEEEEEEECCCCCCCTTC-------SCEEEEEEECTTCCEEEEEEE---------TTTC-------------------
T ss_pred cCceEEEEEEcCCCCCCCCC-------eeEEEEEEEecCCEEEEEEEE---------cCCC-------------------
Confidence 35668899999999886654 789999999999999998874 1100
Q ss_pred CCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHHHHHHHHH
Q psy18164 840 EKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLS 919 (1212)
Q Consensus 840 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~eel~~~~~ 919 (1212)
++. .+.++ .. ..||++|++++++
T Consensus 126 -------------------------------------------------~~~----~i~I~---~~-~~Ls~eei~~mi~ 148 (182)
T 3n8e_A 126 -------------------------------------------------REQ----QIVIQ---SS-GGLSKDDIENMVK 148 (182)
T ss_dssp -------------------------------------------------CEE----EEEES---CC-CCCCHHHHHHHHH
T ss_pred -------------------------------------------------CEe----eEEEe---cC-ccCCHHHHHHHHH
Confidence 000 12221 12 5799999999999
Q ss_pred HHHhHhHHHHHHHHHHHHHhhHHHHHHHHHhcc
Q psy18164 920 KLDSLNQIEHAKVRKEKALNSLESLLFDAKSKL 952 (1212)
Q Consensus 920 ~l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL 952 (1212)
+++++..+|++++++.++||+||+|+|++|++|
T Consensus 149 ~a~~~~~eD~~~~~~~e~kn~le~~iy~~~~~l 181 (182)
T 3n8e_A 149 NAEKYAEEDRRKKERVEAVNMAEGIIHDTETKM 181 (182)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999987
|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3.5e-20 Score=212.83 Aligned_cols=226 Identities=13% Similarity=0.112 Sum_probs=147.7
Q ss_pred eeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCC-CCHH--HH--HHHHHH------------HHHcCCCeeeeec
Q psy18164 392 ELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGY-FNQI--ER--QSMLKA------------GELAGLKVLQLMN 454 (1212)
Q Consensus 392 ~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~-f~~~--qR--~al~~A------------a~~AGl~~~~li~ 454 (1212)
..+++..+++.+ ..|+. +.. .+.++ ++|+++|.. |... || .++.+- ++.+++..+.++.
T Consensus 72 ~~~~~~~l~~i~-~aL~~-~~~-~~~~~-~lv~glP~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~ 147 (320)
T 2zgy_A 72 WQYSDVNVVAVH-HALLT-SGL-PVSEV-DIVCTLPLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMP 147 (320)
T ss_dssp GGGSHHHHHHHH-HHHHH-HSC-CSCEE-EEEEEECHHHHBCTTSSBCHHHHHHHHHHTTSCEEETTBCCCEEEEEEEEE
T ss_pred ccchHHHHHHHH-HHHHH-cCC-CCceE-EEEEcCCHHHHccCCCcccHHHHHHHHHhhcCcEecCCCcEEEEEEEEEec
Confidence 467788777654 44443 211 22233 699999987 6531 21 222211 2344567788999
Q ss_pred hhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHH
Q psy18164 455 DYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLR 534 (1212)
Q Consensus 455 EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~ 534 (1212)
||.||+++|+.... . +..++|+|+||||||+++++ .| .+.+..+.++..+||.+||+.|+
T Consensus 148 e~~aa~~~~~~~~~-----~-~~~~~vvDiGggttd~~v~~--------~g------~~~v~~~~~~~~lGg~~~~~~I~ 207 (320)
T 2zgy_A 148 ESIPAGYEVLQELD-----E-LDSLLIIDLGGTTLDISQVM--------GK------LSGISKIYGDSSLGVSLVTSAVK 207 (320)
T ss_dssp SSHHHHHHHHHHSC-----T-TCEEEEEEECSSCEEEEEEE--------GG------GCCEEEEEEECSCCTHHHHHHHH
T ss_pred CcHHHHHhhhcccc-----C-CCCEEEEEcCCCeEEEEEEe--------CC------eeEEeeecCCccccHHHHHHHHH
Confidence 99999998863211 2 57899999999999999997 13 34566667788999999999999
Q ss_pred HHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHh-hhh-ccCCceeEEEEeecccCcceEEEEeHHHHHHHHHHHHHHHH
Q psy18164 535 DFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRL-KNV-LSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVG 612 (1212)
Q Consensus 535 ~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~-K~~-LS~n~~~~i~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~ 612 (1212)
+++.++ +.++. . ..|+++ |.. +..... ...+ . .-.++++.+++++.++.+.
T Consensus 208 ~~l~~~-------~~~i~--~-------~~ae~~lk~~~~~~~~~------~~i~---~--~~~~~~~~~~i~~~~~~~~ 260 (320)
T 2zgy_A 208 DALSLA-------RTKGS--S-------YLADDIIIHRKDNNYLK------QRIN---D--ENKISIVTEAMNEALRKLE 260 (320)
T ss_dssp HHTTCC-------SBGGG--H-------HHHHHHHHTTTCHHHHH------HHSS---S--SCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHc-------CCCCC--H-------HHHHHHHHHhhhhhccc------ceec---C--chhhHHHHHHHHHHHHHHH
Confidence 888642 12221 1 123333 221 000000 0000 0 0134555566666666666
Q ss_pred HHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCC---cccCCCCchhHHHhhHHHHH
Q psy18164 613 YPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGV---ELSKNLNTDEAAALGAVYKA 674 (1212)
Q Consensus 613 ~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~---~i~~~~n~deaVA~GAa~~a 674 (1212)
+.|.+.++. ..+++.|+|+||+|++ +++.|++.|+. ++....||++|+|+||+++|
T Consensus 261 ~~i~~~i~~----~~~~~~vvl~GGga~l--l~~~l~~~~~~~~~~~~~~~~P~~a~A~G~~~~~ 319 (320)
T 2zgy_A 261 QRVLNTLNE----FSGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG 319 (320)
T ss_dssp HHHHHHHTT----CCCCCEEEEESTTHHH--HHHHHHHTSCCCGGGEECCSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHh----hcCCCeEEEECChHHH--HHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHhc
Confidence 666666654 2578999999999998 99999999996 57888999999999999876
|
| >1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A | Back alignment and structure |
|---|
Probab=99.78 E-value=5.1e-19 Score=205.36 Aligned_cols=162 Identities=22% Similarity=0.282 Sum_probs=117.7
Q ss_pred eEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEecC--c-eeEccchhhhhccCCCChHHHHHHHhCCCCCC
Q psy18164 37 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG--E-RTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDS 113 (1212)
Q Consensus 37 ~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~~--~-~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~ 113 (1212)
.+|||||||+||++++..+ . .++ .+||+|+|.++ . .++|.+|+....++|.++..
T Consensus 4 ~~igIDlGT~~s~v~~~~~--~-~~~-------~~PS~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~------------ 61 (344)
T 1jce_A 4 KDIGIDLGTANTLVFLRGK--G-IVV-------NEPSVIAIDSTTGEILKVGLEAKNMIGKTPATIKA------------ 61 (344)
T ss_dssp CEEEEEECSSEEEEEETTT--E-EEE-------EEESCEEEETTTCCEEEESHHHHTTTTCCCTTEEE------------
T ss_pred ceEEEEcCcCcEEEEECCC--C-EEE-------eeCcEEEEecCCCcEEEEcHHHHHhcccCCCCeEE------------
Confidence 5799999999999987532 2 232 27999999754 3 47999998877777765421
Q ss_pred HHHHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHH
Q psy18164 114 PVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLK 193 (1212)
Q Consensus 114 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~ 193 (1212)
..|+. ++.+ ..-..++++++++|++++.. ..++ ...+|||||++|++.||+++++
T Consensus 62 --------~~p~~-------~g~i------~~~~~~~~i~~~~l~~~~~~--~~~~--~~~~vitvP~~~~~~~r~~~~~ 116 (344)
T 1jce_A 62 --------IRPMR-------DGVI------ADYTVALVMLRYFINKAKGG--MNLF--KPRVVIGVPIGITDVERRAILD 116 (344)
T ss_dssp --------ECCEE-------TTEE------SSHHHHHHHHHHHHHHHHTS--CCSC--CCEEEEEECTTCCHHHHHHHHH
T ss_pred --------EecCC-------CCee------CChHHHHHHHHHHHHHHhhc--cccC--CCeEEEEECCCCCHHHHHHHHH
Confidence 11221 1111 00113455555555554432 1233 3689999999999999999999
Q ss_pred HHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEe
Q psy18164 194 AGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQV 251 (1212)
Q Consensus 194 Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~ 251 (1212)
|++.||++++.+++||+|||++|+.... .+..+||||+||||+|++++....
T Consensus 117 a~~~aG~~~~~li~ep~Aaa~~~~~~~~------~~~~~lVvDiGggttdvsv~~~~~ 168 (344)
T 1jce_A 117 AGLEAGASKVFLIEEPMAAAIGSNLNVE------EPSGNMVVDIGGGTTEVAVISLGS 168 (344)
T ss_dssp HHHHTTCSEEEEEEHHHHHHHHTTCCTT------SSSCEEEEEECSSCEEEEEEETTE
T ss_pred HHHHcCCCeEeccCCHHHHHHhcCCCCC------CCceEEEEEeCCCeEEEEEEEcCC
Confidence 9999999999999999999999986432 245799999999999999998743
|
| >3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A | Back alignment and structure |
|---|
Probab=99.72 E-value=8e-17 Score=162.22 Aligned_cols=148 Identities=20% Similarity=0.311 Sum_probs=118.6
Q ss_pred EEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccCc---eEEEEEeccCcccCChhhhhccCceee
Q psy18164 688 TKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQIAMLGTKQI 764 (1212)
Q Consensus 688 ~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~~~~~~~~~i 764 (1212)
+.|++||+|||++. |+ .+.+||++|+++|++++.+|++..++ +.|.||+| +... + . .+..|
T Consensus 2 ~~Dv~p~slGi~~~-----gg---~~~~lI~rnt~iP~~k~~~f~t~~d~Q~~v~i~VyqG-e~~~-~-~-----dn~~L 65 (152)
T 3h0x_A 2 NADVNALTLGIETT-----GG---VMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEG-ERAM-S-K-----DNNLL 65 (152)
T ss_dssp -CCBCSSCEEEEET-----TT---EEEEEECTTCBSSEEEEEEECCSSTTCCCEEEEEEES-SCSB-G-G-----GSEEE
T ss_pred ccceeccEEEEEEc-----CC---EEEEEEECcCccCEEEEEEEEeCCCCcceeeeeEEEc-Cccc-c-c-----cCcEE
Confidence 57999999999996 33 37899999999999999999987554 89999999 7653 2 2 35668
Q ss_pred eeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccccCCCCCCCCCCcc
Q psy18164 765 SKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKTDENEKPIN 844 (1212)
Q Consensus 765 ~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~~~~~~~~~~~~~ 844 (1212)
++|.|.|+++++++. ++|+|+|++|.||+|+|++.+ .+|.
T Consensus 66 G~f~l~gipp~p~G~-------~~I~Vtf~iD~nGiL~V~a~d---------~~tg------------------------ 105 (152)
T 3h0x_A 66 GKFELTGIPPAPRGV-------PQIEVTFALDANGILKVSATD---------KGTG------------------------ 105 (152)
T ss_dssp EEEEECCCCCCCTTC-------SCEEEEEEECTTSEEEEEEEE---------TTTC------------------------
T ss_pred EEEEEeCCCCCCCCC-------ceEEEEEEEcCCCEEEEEEEE---------cCCC------------------------
Confidence 899999999886554 789999999999999999884 1100
Q ss_pred cccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHHHHHHHHHHHHhH
Q psy18164 845 EAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKLDSL 924 (1212)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~eel~~~~~~l~~l 924 (1212)
++. .+.++ .+...||+++++++++.++++
T Consensus 106 --------------------------------------------~~~----~i~I~---~~~~~ls~~ei~~~~~~a~~~ 134 (152)
T 3h0x_A 106 --------------------------------------------KSE----SITIT---NDKGRLTQEEIDRMVEEAEKF 134 (152)
T ss_dssp --------------------------------------------CEE----EEEEE---CCTTCCCHHHHHHHHHHHHHT
T ss_pred --------------------------------------------cEe----EEEEe---cCCCCCCHHHHHHHHHHHHHH
Confidence 000 12221 233579999999999999999
Q ss_pred hHHHHHHHHHHHHHhhHH
Q psy18164 925 NQIEHAKVRKEKALNSLE 942 (1212)
Q Consensus 925 ~~~D~~~~~~~eakN~LE 942 (1212)
..+|++.+++.++||+||
T Consensus 135 ~~~D~~~~~~~~~~n~le 152 (152)
T 3h0x_A 135 ASEDASIKAKVESRNKLE 152 (152)
T ss_dssp HHHHHHHHHHHHCSCCCC
T ss_pred HHhhHHHHHHHHHHhhcC
Confidence 999999999999999987
|
| >3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-16 Score=161.15 Aligned_cols=148 Identities=20% Similarity=0.325 Sum_probs=115.1
Q ss_pred EEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccCc---eEEEEEeccCcccCChhhhhccCceee
Q psy18164 688 TKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQIAMLGTKQI 764 (1212)
Q Consensus 688 ~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~~~~~~~~~i 764 (1212)
+.|++||+|||++. |+ .+.+||++|+++|++++.+|++..++ +.|.||+| +... + . .+..|
T Consensus 2 ~~Dv~p~slGie~~-----gg---~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqG-e~~~-~-~-----dn~~L 65 (152)
T 3dob_A 2 NADVAPLSLGIETA-----GG---VMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEG-ERAM-T-R-----DNHRL 65 (152)
T ss_dssp --CBCSSCEEEEET-----TT---EEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEES-SCSB-G-G-----GSEEE
T ss_pred ceeeecceEEEEEc-----CC---EEEEEEECcCccCEEEEEEEEECCCCceEEEEEEEEc-Cccc-c-c-----cCcee
Confidence 67999999999996 33 37899999999999999999987665 89999999 7653 2 2 35668
Q ss_pred eeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccccCCCCCCCCCCcc
Q psy18164 765 SKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKTDENEKPIN 844 (1212)
Q Consensus 765 ~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~~~~~~~~~~~~~ 844 (1212)
++|.|.|+++++++. ++|+|+|++|.||+|+|++.+ .+|.
T Consensus 66 G~f~l~gipp~p~G~-------~~IeVtf~iD~nGiL~Vsa~d---------~~tg------------------------ 105 (152)
T 3dob_A 66 GTFELSGIPPAPRGV-------PQIEVTFNIDANGILNVSAED---------KSTG------------------------ 105 (152)
T ss_dssp EEEEEECCCCCCTTC-------CCEEEEEEECTTCCEEEEEEE---------TTTC------------------------
T ss_pred EEEEEeCCCCCCCCC-------ceEEEEEEeCCCCeEEEEEEE---------cCCC------------------------
Confidence 899999999886654 789999999999999999884 1110
Q ss_pred cccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHHHHHHHHHHHHhH
Q psy18164 845 EAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKLDSL 924 (1212)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~eel~~~~~~l~~l 924 (1212)
++. .+.++ .+...||+++++++++..+++
T Consensus 106 --------------------------------------------~~~----~i~I~---~~~~~Ls~~ei~~~~~~a~~~ 134 (152)
T 3dob_A 106 --------------------------------------------KSN----RITIQ---NEKGRLTQSDIDRMVHEAKQF 134 (152)
T ss_dssp --------------------------------------------CEE----EEEEC---CC----CHHHHHHHHHHHHHT
T ss_pred --------------------------------------------CEE----EEEEE---cCCCCCCHHHHHHHHHHHHHH
Confidence 000 01111 123459999999999999999
Q ss_pred hHHHHHHHHHHHHHhhHH
Q psy18164 925 NQIEHAKVRKEKALNSLE 942 (1212)
Q Consensus 925 ~~~D~~~~~~~eakN~LE 942 (1212)
..+|++.+++.++||+||
T Consensus 135 ~~~D~~~~~~~~~~n~le 152 (152)
T 3dob_A 135 EKEDGEQRERVQARNQLE 152 (152)
T ss_dssp HHHHHHHHHTCCCCSEEC
T ss_pred HHhhHHHHHHHHHHhhcC
Confidence 999999999999999986
|
| >3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-16 Score=160.57 Aligned_cols=147 Identities=19% Similarity=0.265 Sum_probs=117.3
Q ss_pred EEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccCc---eEEEEEeccCcccCChhhhhccCceee
Q psy18164 688 TKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQIAMLGTKQI 764 (1212)
Q Consensus 688 ~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~~~~~~~~~i 764 (1212)
+.|++||+|||++. |+ .+.+||++|+++|++++.+|++..++ +.|.||+| +... + . .+..|
T Consensus 2 ~~DV~p~slGie~~-----gg---~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~i~VyqG-e~~~-~-~-----dn~~L 65 (151)
T 3dqg_A 2 NADVTPLSLGIETL-----GG---IMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQG-EREM-A-T-----SNKLL 65 (151)
T ss_dssp --CBCSSCEEEEET-----TT---EEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEES-SCSB-G-G-----GSEEE
T ss_pred cceeeeeEEEEEEc-----CC---EEEEEEECcCccCEEEEEEEEECCCCcceEEEEEEEc-CCcc-c-c-----cCcEE
Confidence 67999999999997 33 37899999999999999999987554 99999999 7653 2 2 35668
Q ss_pred eeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccccCCCCCCCCCCcc
Q psy18164 765 SKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKTDENEKPIN 844 (1212)
Q Consensus 765 ~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~~~~~~~~~~~~~ 844 (1212)
++|.|.|+++++++. ++|+|+|++|.||+|+|++.+ .+|.
T Consensus 66 G~f~l~gipp~p~G~-------~~IeVtf~iD~nGiL~Vsa~d---------~~tg------------------------ 105 (151)
T 3dqg_A 66 GQFSLVGIPPAPRGV-------PQVEVTFDIDANGIVNVSARD---------RGTG------------------------ 105 (151)
T ss_dssp EEEEEECCCCCCTTC-------SCEEEEEEECTTSEEEEEEEE---------TTTC------------------------
T ss_pred EEEEEeCCCCCCCCC-------cEEEEEEEeccCcEEEEEEEE---------ccCC------------------------
Confidence 899999999886654 789999999999999999874 1110
Q ss_pred cccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHHHHHHHHHHHHhH
Q psy18164 845 EAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKLDSL 924 (1212)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~eel~~~~~~l~~l 924 (1212)
++. .+.++ .+ ..||+++++++++..+++
T Consensus 106 --------------------------------------------~~~----~i~I~---~~-~~Ls~~ei~~~~~~a~~~ 133 (151)
T 3dqg_A 106 --------------------------------------------KEQ----QIVIQ---SS-GGLSKDQIENMIKEAEKN 133 (151)
T ss_dssp --------------------------------------------CEE----EEEEE---CS-SSSCHHHHHHHHHHHHHH
T ss_pred --------------------------------------------CEe----EEEEe---cC-CCCCHHHHHHHHHHHHHH
Confidence 000 12222 23 579999999999999999
Q ss_pred hHHHHHHHHHHHHHhhHH
Q psy18164 925 NQIEHAKVRKEKALNSLE 942 (1212)
Q Consensus 925 ~~~D~~~~~~~eakN~LE 942 (1212)
..+|++.+++.++||+||
T Consensus 134 ~~~D~~~~~~~~~~n~~e 151 (151)
T 3dqg_A 134 AAEDAKRKELVEVINQAE 151 (151)
T ss_dssp HHHHTTCCCEEECBCCCC
T ss_pred HHHhHHHHHHHHHHhhcC
Confidence 999999999999999986
|
| >1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-17 Score=196.76 Aligned_cols=215 Identities=14% Similarity=0.124 Sum_probs=88.7
Q ss_pred ceEEEecCCCCCHHHHHHHHHHH-HHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEe
Q psy18164 420 NEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQV 498 (1212)
Q Consensus 420 ~~~VItVP~~f~~~qR~al~~Aa-~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~ 498 (1212)
..++||+|++++..+|+++.+++ +.+|++.+.++++|.|||++++. ...+|+|+|+|+|+++.+.
T Consensus 105 ~~vllt~p~~~~~~~r~~~~e~~fe~~~~~~~~~~~~~~~a~~a~g~-----------~~~lVVDiG~g~T~v~pv~--- 170 (394)
T 1k8k_B 105 CKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGL-----------LTGVVVDSGDGVTHICPVY--- 170 (394)
T ss_dssp ------------------------------------------------------------CCEEEECSSCEEEECEE---
T ss_pred CcEEEEECCCCCHHHHHHHHHHhhhccCCCeEEEEhhHHHHHHhCCC-----------ceEEEEEcCCCceEeeeeE---
Confidence 35999999999999999999865 77899999999999999988864 2469999999999998775
Q ss_pred eecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCc--
Q psy18164 499 VKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANN-- 576 (1212)
Q Consensus 499 ~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~-- 576 (1212)
.|. + +........+||+++|..|.++|..+... .....+. ..++++|+.+..-.
T Consensus 171 -----~G~------~-~~~~~~~~~~GG~~lt~~l~~~l~~~~~~-----~~~~~~~-------~~ae~iK~~~~~v~~d 226 (394)
T 1k8k_B 171 -----EGF------S-LPHLTRRLDIAGRDITRYLIKLLLLRGYA-----FNHSADF-------ETVRMIKEKLCYVGYN 226 (394)
T ss_dssp -----TTE------E-CSTTCEEESCCHHHHHHHHHHHHHHTTCC-----CCTTTTH-------HHHHHHHHHHCCCCSS
T ss_pred -----CCE------E-cccceEEeeccHHHHHHHHHHHHHhcCCC-----CCcHHHH-------HHHHHHHHhheeEecC
Confidence 241 1 11112235799999999999999765211 1111122 23444454432111
Q ss_pred ------------eeEEEEeecccCcceEEEEeHHHHH---HHHHHH-----HHHHHHHHHHHHHhcCCC--CCCccEEEE
Q psy18164 577 ------------EHFAQIEGLIDEIDFKLLVTRAEFE---ALNEDL-----FDRVGYPVEQALKSSAVP--MDVISQVIL 634 (1212)
Q Consensus 577 ------------~~~i~ie~l~~~~d~~~~itR~efe---~l~~~l-----~~~i~~~i~~~L~~a~~~--~~~i~~ViL 634 (1212)
.....++ +-++ ..++|+++.|+ .|++|- ...+.+.|.++|..+... .+-++.|+|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~-lpdg--~~i~i~~erf~~~E~Lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvL 303 (394)
T 1k8k_B 227 IEQEQKLALETTVLVESYT-LPDG--RIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVL 303 (394)
T ss_dssp HHHHHHHHHHCSTTCEEEE-CTTS--CEEEECTHHHHTGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTCEE
T ss_pred HHHHHHhhccCCcCceEEE-CCCC--CEEEECchhhcChHhhCCchhccCCCCCHHHHHHHHHHhCCHHHHHHHHhCEEE
Confidence 0001111 2222 25678888883 233331 235778888888877432 334577999
Q ss_pred EcCCcCCHHHHHHHHHHhCC-----------------cc--cCCCCchhHHHhhHHHHHH
Q psy18164 635 VGAGTRVPKVQEKITKVVGV-----------------EL--SKNLNTDEAAALGAVYKAA 675 (1212)
Q Consensus 635 vGGssriP~Vq~~l~~~fg~-----------------~i--~~~~n~deaVA~GAa~~aa 675 (1212)
+||+|++|.+.++|.+.++. ++ ..+.++..++.+||+++|.
T Consensus 304 tGG~s~~~G~~~rl~~el~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilas 363 (394)
T 1k8k_B 304 SGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLAD 363 (394)
T ss_dssp ESGGGCSTTHHHHHHHHHHHHHHHHTCSSCCCTTCCCCC---------------------
T ss_pred eCcccccccHHHHHHHHHHHHHhhhhcccccCCCCceEEEEecCCCcceeEEhhhHHhhC
Confidence 99999999999999877752 12 2245677899999999886
|
| >4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.5e-15 Score=168.69 Aligned_cols=184 Identities=16% Similarity=0.163 Sum_probs=124.3
Q ss_pred HcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCC
Q psy18164 444 LAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 523 (1212)
Q Consensus 444 ~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~ 523 (1212)
+++...+..|||++|+|+++..... ....|+|+|||+++++++.. ++.+++...+++..
T Consensus 68 ~a~~~~~~~Vne~~aha~a~~~~~~--------~~~~vl~lgG~~~~~~~~~~-------------~g~~~~~~~~~~~~ 126 (276)
T 4ehu_A 68 MNYSDADKQISELSCHARGVNFIIP--------ETRTIIDIGGQDAKVLKLDN-------------NGRLLNFLMNDKCA 126 (276)
T ss_dssp GGCCSCSEECCHHHHHHHHHHHHST--------TCCEEEEECSSCEEEEEECT-------------TSCEEEEEEECSCS
T ss_pred HHhhCCCcccchHHHHHHHHHHhCC--------CCCeEEEEcCCCceEEEEEe-------------cCceEEEEeCCCcC
Confidence 4677888999999999988755432 23478999999999988852 33688888889999
Q ss_pred CChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhh--ccCCceeEEE---EeecccCcceEEEEeHH
Q psy18164 524 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNV--LSANNEHFAQ---IEGLIDEIDFKLLVTRA 598 (1212)
Q Consensus 524 lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~--LS~n~~~~i~---ie~l~~~~d~~~~itR~ 598 (1212)
.||.+|+..+++++.-.|.... .+ +.+++.. ++........ +..+..+ .
T Consensus 127 ~g~G~f~d~~a~~l~~~~~~~~--------------~~---~~~a~~~~~i~~~~~~f~~s~~~~~~~~~---------~ 180 (276)
T 4ehu_A 127 AGTGRFLDVMAKIIEVDVSELG--------------SI---SMNSQNEVSISSTCTVFAESEVISHLSEN---------A 180 (276)
T ss_dssp TTSHHHHHHHHHHHTCCGGGHH--------------HH---HTTCSSCCCCCCCSHHHHHHHHHHHHHTT---------C
T ss_pred cchhhHHHHHHHHhccChhhhH--------------HH---HhcCCCCCCcCCccchhhhhHHHHhhhcc---------c
Confidence 9999999999988865544310 00 0111110 1100000000 0000001 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhc
Q psy18164 599 EFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 678 (1212)
Q Consensus 599 efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls 678 (1212)
..++++..+.+.+.+.+....... ..++.|+|+||.++.|.|++.|++.||.++..+.||++++|+|||++|....
T Consensus 181 ~~~di~a~~~~~v~~~l~~~~~~~----~~~~~vvl~GGva~n~~lr~~l~~~~g~~~~~p~~p~~~~A~GAAl~A~~~~ 256 (276)
T 4ehu_A 181 KIEDIVAGIHTSVAKRVSSLVKRI----GVQRNVVMVGGVARNSGIVRAMAREINTEIIVPDIPQLTGALGAALYAFDEA 256 (276)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH----CCCSSEEEESGGGGCHHHHHHHHHHHTSCEECCSSGGGHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhc----ccCCeEEEecCccchHHHHHHHHHHHCCCeeeCCCcchHHHHHHHHHHHHHH
Confidence 124556666655555554444433 3567899999999999999999999999999999999999999999997654
|
| >2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-15 Score=153.96 Aligned_cols=148 Identities=20% Similarity=0.290 Sum_probs=116.7
Q ss_pred EEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccCc---eEEEEEeccCcccCChhhhhccCceee
Q psy18164 688 TKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQIAMLGTKQI 764 (1212)
Q Consensus 688 ~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~~~~~~~~~i 764 (1212)
+.|++||+|||++. ++ .+.+||++|+++|++++.+|++..++ +.|.|||| +... + . .+..|
T Consensus 2 v~Dv~p~slGi~~~-----~g---~~~~li~rnt~iP~~k~~~f~t~~d~Q~~v~i~v~qG-e~~~-~-~-----~n~~l 65 (152)
T 2op6_A 2 NADVNPLTLGIETV-----GG---VMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEG-ERPM-V-M-----DNHKL 65 (152)
T ss_dssp -CCBCSSCEEEEET-----TT---EEEEEECTTCBSSEEEEEEEEESSTTCCCEEEEEEES-SCSB-G-G-----GSEEE
T ss_pred ceEeecccEEEEEe-----CC---EEEEEEeCCCcccEeEEEEEEeCCCCCcEEEEEEEEe-CCcc-C-c-----cCCEe
Confidence 57999999999986 33 37899999999999999999987554 99999999 7542 2 1 35568
Q ss_pred eeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccccCCCCCCCCCCcc
Q psy18164 765 SKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKTDENEKPIN 844 (1212)
Q Consensus 765 ~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~~~~~~~~~~~~~ 844 (1212)
++|.|.|+++++++. ++|+|+|++|.||+|+|++.+. .+.
T Consensus 66 g~~~l~gipp~p~G~-------~~I~V~f~id~nGiL~V~a~d~---------~tg------------------------ 105 (152)
T 2op6_A 66 GNFDVTGIPPAPRGV-------PQIEVTFEIDVNGILHVSAEDK---------GTG------------------------ 105 (152)
T ss_dssp EEEEECCCCCCCTTC-------SCEEEEEEECTTSCEEEEEEET---------TTC------------------------
T ss_pred EEEEEECCCCCCCCC-------ceEEEEEEECCCcEEEEEEEEe---------cCC------------------------
Confidence 899999999875544 6899999999999999998731 000
Q ss_pred cccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHHHHHHHHHHHHhH
Q psy18164 845 EAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKLDSL 924 (1212)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~eel~~~~~~l~~l 924 (1212)
++. .+.++ .....||+++++++++++.+|
T Consensus 106 --------------------------------------------~~~----~i~i~---~~~~~ls~eei~~~~~~~~~~ 134 (152)
T 2op6_A 106 --------------------------------------------NKN----KLTIT---NDHNRLSPEDIERMINDADKF 134 (152)
T ss_dssp --------------------------------------------CEE----EEEEC---SSSSCCCHHHHHHHHHHHHHT
T ss_pred --------------------------------------------cEE----EEEee---ccccCCCHHHHHHHHHHHHHh
Confidence 000 12221 123469999999999999999
Q ss_pred hHHHHHHHHHHHHHhhHH
Q psy18164 925 NQIEHAKVRKEKALNSLE 942 (1212)
Q Consensus 925 ~~~D~~~~~~~eakN~LE 942 (1212)
..+|+..+++.++||+||
T Consensus 135 ~~~d~~~~~~~~~kn~~e 152 (152)
T 2op6_A 135 AADDQAQKEKVESRNELE 152 (152)
T ss_dssp HHHHHHHHHHSCCCSEEC
T ss_pred HhccHHHHHHHHHHhhcC
Confidence 999999999999999986
|
| >3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.3e-15 Score=172.84 Aligned_cols=210 Identities=14% Similarity=0.131 Sum_probs=140.9
Q ss_pred eEEEecCCCCCHHHH-HHHHHHHHHcCC------------CeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCC
Q psy18164 421 EAVIIVPGYFNQIER-QSMLKAGELAGL------------KVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAW 487 (1212)
Q Consensus 421 ~~VItVP~~f~~~qR-~al~~Aa~~AGl------------~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Ggg 487 (1212)
.+|+.+|..+...+| +++++++...+- ..+.++.||.||+++|+.........-.+..++|+|+|||
T Consensus 115 ~lvvGLP~~~~~~~k~~~l~~~l~~~~~v~~~g~~~~i~I~~V~v~pE~~~a~~~~~~~~~~~~~~~~~~~~~vvDiGgg 194 (355)
T 3js6_A 115 VIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINVKGVKIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSG 194 (355)
T ss_dssp EEEEEECGGGTTSHHHHHHHHHHSSCEEEEETTEEEEEEEEEEEEEEHHHHHHHHTTEETTEECHHHHTCEEEEEEECSS
T ss_pred EEEEeCCHHHHhHHHHHHHHHHhCCCeEEEECCEEEEEEEEEEEEEeCcHHHHHHHHHccCccccccccCcEEEEEeCCC
Confidence 789999999998887 589999885543 4567899999999998764311000001688999999999
Q ss_pred ceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHH
Q psy18164 488 STTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGR 567 (1212)
Q Consensus 488 t~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek 567 (1212)
|||++++. .| .+ +....+...+||..++..|.+++.+++.. ..+. .+ ..++
T Consensus 195 Ttd~~v~~--------~~------~~-~~~~s~s~~~G~~~~~~~i~~~l~~~~~g-----~~l~--~~-------~i~~ 245 (355)
T 3js6_A 195 TTIIDTYQ--------NM------KR-VEEESFVINKGTIDFYKRIASHVSKKSEG-----ASIT--PR-------MIEK 245 (355)
T ss_dssp CEEEEEEE--------TT------EE-CGGGCEEESCCHHHHHHHHHHHTC-------------C--HH-------HHHS
T ss_pred cEEEEEEc--------CC------EE-ccccccCcchHHHHHHHHHHHHHHHhcCC-----CcCC--HH-------HHhc
Confidence 99999984 13 11 11112235799999999999999877521 1222 11 1122
Q ss_pred hhhhccCCceeEEEEeecccCcceEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHH--HH
Q psy18164 568 LKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPK--VQ 645 (1212)
Q Consensus 568 ~K~~LS~n~~~~i~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~--Vq 645 (1212)
.+... ... . +..-.+.+ .+.+++.++++++++...|++.+.+ ++.++.|+|+||++.++. ++
T Consensus 246 g~~~~---------~~~-~-~~~k~~di-~~~i~~a~~~~~~~I~~~i~~~l~~----~~~~~~Ivl~GGGa~l~~~~l~ 309 (355)
T 3js6_A 246 GLEYK---------QCK-L-NQKTVIDF-KDEFYKEQDSLIEEVMSNFEITVGN----INSIDRIIVTGGGANIHFDSLS 309 (355)
T ss_dssp CCC------------------------C-HHHHHHHHHHHHHHHHHHHHHHTCC----TTSCSEEEEESTTHHHHHHHHH
T ss_pred CCccc---------ccc-c-cccccccH-HHHHHHHHHHHHHHHHHHHHHHhhc----hhhccEEEEECcchhcchhhHH
Confidence 21100 000 0 00001122 3567788888888888888888754 467899999999999998 88
Q ss_pred HHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcC
Q psy18164 646 EKITKVVGVELSKNLNTDEAAALGAVYKAADLST 679 (1212)
Q Consensus 646 ~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~ 679 (1212)
+.|++.|+.. .||..|+|+|+..++..+..
T Consensus 310 ~~i~~~~~~~----~~p~~anA~G~~~~~~~~~~ 339 (355)
T 3js6_A 310 HYYSDVFEKA----DDSQFSNVRGYEKLGELLKN 339 (355)
T ss_dssp HHSSSCEECC----SSGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCC----CCcHHHHHHHHHHHHHHHHh
Confidence 9999888532 89999999999999987763
|
| >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-13 Score=160.06 Aligned_cols=101 Identities=18% Similarity=0.091 Sum_probs=72.0
Q ss_pred eHHHHHHHHHHHHHHHHHHhcCCccccEE--EccCCCCCHHHHHHHHHHHHHc--------C------CceEEEecchhH
Q psy18164 148 HVEELVAMLLHKAREYASVSAGQVINEAV--IIVPGYFNQIERQSMLKAGELA--------G------LKVLQLMNDYTA 211 (1212)
Q Consensus 148 s~~ev~~~~L~~l~~~a~~~~~~~~~~~V--itVPa~f~~~qr~~l~~Aa~~A--------G------l~~~~li~EP~A 211 (1212)
..+....+++..|+..++...+.+ .++| ++||++|+..||+++++|+..+ | ++.+.+++||.|
T Consensus 96 ~~~~~~~ll~~~l~~~~~~~~~~~-~~vvL~i~vP~~~~~~er~a~~~~~~~~~~~v~~~~G~~~~i~v~~v~li~Ep~A 174 (346)
T 2fsj_A 96 ASKEAFPLIAAALWESGIHNDGSP-VDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQGVG 174 (346)
T ss_dssp TSTTTHHHHHHHHHHHCCCC---C-EEEEEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEEETTHH
T ss_pred cChhHHHHHHHHHHHhhhccCCCc-eEEEEcccCCHHHHHHHHHHHHHHHcCCCcEEEeCCCceEEEEEEEEEEEccHHH
Confidence 334455556665655442223333 4699 9999999999999999998776 4 456889999999
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEee
Q psy18164 212 VALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVV 252 (1212)
Q Consensus 212 Aal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~~ 252 (1212)
||++|. ... .. .....++||||+||||||++++++..+
T Consensus 175 Aa~~~l-~~~-~~-~~~~~~vlVvDIGgGTtDv~vi~~~~g 212 (346)
T 2fsj_A 175 AALYLL-NQG-II-EQQPGYGVVIDVGSRTTDVLTINLMDM 212 (346)
T ss_dssp HHHHHH-HHT-SS-CCCSSEEEEEEECSSCEEEEEEETTTT
T ss_pred HHHHhh-ccc-cc-cccCCcEEEEECCCCcEEEEEEEecCC
Confidence 999883 221 11 112358999999999999999997554
|
| >4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-13 Score=158.24 Aligned_cols=203 Identities=14% Similarity=0.113 Sum_probs=139.8
Q ss_pred ceEEEecCCCCCH--HHHHHHHHHHHHc--------C------CCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEE
Q psy18164 420 NEAVIIVPGYFNQ--IERQSMLKAGELA--------G------LKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYD 483 (1212)
Q Consensus 420 ~~~VItVP~~f~~--~qR~al~~Aa~~A--------G------l~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D 483 (1212)
..+|+++|..+.. .+|+.+++....- | +..+.++.|+.+|.+.+. ..+ . ...++|+|
T Consensus 106 v~lv~gLP~~~~~~~~~k~~~~~~l~~~~~v~~~~~g~~~~i~I~~v~v~pe~~ga~~~~~----~~~--~-~~~v~vvD 178 (329)
T 4apw_A 106 VQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDITIKAEGSGVLFLEQ----ENF--K-NKNVAVID 178 (329)
T ss_dssp EEEEEEECGGGTTSSTTTTHHHHHHSSCEEECSSTTCCCEEEEEEEEEEEEHHHHHHHHSC----CCC--T-TCEEEEEE
T ss_pred EEEEEcCCHHHhcchhHHHHHHHHhcCCceEEEEECCEEEEEEEeEEEEEeccHHHHhhcc----hhh--c-cCCEEEEE
Confidence 3789999988764 3677777765521 1 123667899988887652 111 2 68899999
Q ss_pred cCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHH-HHhhcccCCCCCCCCHHHHHHHH
Q psy18164 484 MGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGK-KFNEMKKTTKDVFENPRAVAKLF 562 (1212)
Q Consensus 484 ~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~-~~~~~~~~~~d~~~~~ra~~kL~ 562 (1212)
+||||||+++++- | .+ +....+...+||..++..|++++.+ ++.. .+..
T Consensus 179 iGggTtd~~v~~~--------g------~~-~~~~~~~~~~G~~~~~~~i~~~l~~~~~g~------~i~~--------- 228 (329)
T 4apw_A 179 FGGLNMGFSLYRN--------C------VV-NPSERFIEEHGVKDLIIRVGDALTDLNNGN------LITN--------- 228 (329)
T ss_dssp ECSSCEEEEEEET--------T------EE-CGGGCEEESCCHHHHHHHHHTSSSSCSSCS------CTTS---------
T ss_pred eCCCcEEEEEEEC--------C------EE-eeccccchhhHHHHHHHHHHHHHHhhccCC------CCCH---------
Confidence 9999999999982 3 22 2222234579999999999988876 4432 2211
Q ss_pred HHHHHhhhhccCCceeEEEEeecccCcceEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCH
Q psy18164 563 KEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVP 642 (1212)
Q Consensus 563 ~~aek~K~~LS~n~~~~i~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP 642 (1212)
..++++|+. .. . ..+.+. ..+..+++++.+++++++|.+.|++. +..++.++.|+|+||++.+
T Consensus 229 ~~~e~i~~~--g~--~-------~~g~~~-~~~~~~~i~~~~~e~~~~I~~~i~~~----~~~~~~~~~IvltGGGA~l- 291 (329)
T 4apw_A 229 EQAESALNN--GY--M-------KKGGEI-DTESSTVIKKVKEKFLKDAIKLIEKR----GFKLDQLDSLIFIGGTTQK- 291 (329)
T ss_dssp BTTTTCSSS--CS--S-------CEECTT-CCSTTHHHHHHHHHHHHHHHHHHHHH----TCCTTSCSEEEEESTTHHH-
T ss_pred HHHHHHHhc--CC--c-------ccCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHc----CCCHHHccEEEEECChHHH-
Confidence 123444442 11 0 001121 13457788888888888888777766 3556668999999999998
Q ss_pred HHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhh
Q psy18164 643 KVQEKITKVVGVELSKNLNTDEAAALGAVYKAADL 677 (1212)
Q Consensus 643 ~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~l 677 (1212)
+.+.|++.|+..+...-||..|+|+|+..++...
T Consensus 292 -~~~~l~~~~~~~v~v~~~P~~a~a~G~~~~~~~k 325 (329)
T 4apw_A 292 -LKEQISKTYPNNSIITNNSQWTTCEGLYKVAVAK 325 (329)
T ss_dssp -HHHHHHHHSTTCEECCSSGGGHHHHHHHHHHHHH
T ss_pred -HHHHHHHHcCCCCEecCCChhhHHHHHHHHHhhh
Confidence 6799999999667778899999999999887643
|
| >1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A | Back alignment and structure |
|---|
Probab=99.25 E-value=3.8e-11 Score=142.77 Aligned_cols=90 Identities=12% Similarity=-0.021 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHhcCCc--cccEEEccCCCCCHHHHHHHHHHH-HHcCCceEEEecchhHHHHH-hhhhcccCCCCC
Q psy18164 152 LVAMLLHKAREYASVSAGQV--INEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALN-YGIFKRKDFNET 227 (1212)
Q Consensus 152 v~~~~L~~l~~~a~~~~~~~--~~~~VitVPa~f~~~qr~~l~~Aa-~~AGl~~~~li~EP~AAal~-y~~~~~~~~~~~ 227 (1212)
....+++|+.. ..++.. ...+|||+|++|+..+|+++.+++ +.+|++.+.+++||+||+++ |.... ....
T Consensus 88 ~~e~i~~~~~~---~~L~~~~~~~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~l~~ep~aa~~a~~~~~~---~~~~ 161 (418)
T 1k8k_A 88 LMERFMEQVIF---KYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQ---VGER 161 (418)
T ss_dssp HHHHHHHHHHH---TTTCCCGGGCCEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGSTT---CCSC
T ss_pred HHHHHHHHHHH---hccCCCCCCCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCEEEEechHHHHhhhhhcccc---cCCC
Confidence 34445555542 234322 357999999999999999999999 99999999999999999987 43211 1111
Q ss_pred CCeEEEEEecCCceEEEEEEE
Q psy18164 228 NPVHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 228 ~~~~vlV~D~GggT~Dvsvv~ 248 (1212)
.. +.||||+||||||++++.
T Consensus 162 ~~-~glVvDiG~gtt~v~~v~ 181 (418)
T 1k8k_A 162 TL-TGTVIDSGDGVTHVIPVA 181 (418)
T ss_dssp CC-CEEEEEESSSCEEEEEEE
T ss_pred CC-eEEEEEcCCCceEEEEeE
Confidence 12 679999999999999985
|
| >1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.3e-11 Score=121.60 Aligned_cols=102 Identities=20% Similarity=0.315 Sum_probs=79.7
Q ss_pred cceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccCc---eEEEEEeccCcccCChhhhhcc
Q psy18164 683 VKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQIAML 759 (1212)
Q Consensus 683 v~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~~~~~ 759 (1212)
++++.+.|++||+|||++. ++ .+.+||++|+++|++++.+|++..++ +.|.|||| +.....
T Consensus 14 ~~d~~l~Dv~p~slGIe~~-----~g---~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqG-e~~~~~------- 77 (135)
T 1q5l_A 14 PRGSHMVDVTPLSLGIETM-----GG---VMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQG-ERKRAA------- 77 (135)
T ss_dssp -------CCCSSCCCEEET-----TT---EECCSSCSSSCSSBCCEEEECCCSSSCSSCEEEEEEC-CSSSCS-------
T ss_pred eCcEEEEEeecCcEEEEEE-----CC---EEEEEEcCCCeEeEeEeEEEEeccCCceEEEEEEEEe-CCcccc-------
Confidence 5789999999999999986 33 37789999999999999999987553 99999999 765321
Q ss_pred CceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEE
Q psy18164 760 GTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIE 807 (1212)
Q Consensus 760 ~~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e 807 (1212)
.+..|+++.+.|+++++++. ++|+|+|++|.||+|+|++.+
T Consensus 78 ~n~~Lg~f~l~gipp~p~G~-------~~IeVtf~iD~nGiL~V~a~d 118 (135)
T 1q5l_A 78 DNKSLGQFNLDGINPAPRGM-------PQIEVTFDIDADGILHVSAKD 118 (135)
T ss_dssp SSEEEEEEECCCCCSCCSSS-------CCEEEEEEECTTSEEEEEEEE
T ss_pred cCcEEEEEEEeCCCCCCCce-------eEEEEEEEECCCCEEEEEEEE
Confidence 35678899999999875554 689999999999999999874
|
| >3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A | Back alignment and structure |
|---|
Probab=99.21 E-value=5.1e-11 Score=114.01 Aligned_cols=83 Identities=30% Similarity=0.416 Sum_probs=77.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhHHHHHH
Q psy18164 930 AKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLVVPIWER 1009 (1212)
Q Consensus 930 ~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~~~Kl~eL~~~~~pi~~R 1009 (1212)
+++++.++||.||+|||++|..|.++.|..++++++++.|...|+++.+||++ +.++++++|+.|+++|+.++.||..|
T Consensus 3 ~~re~ieakN~lEs~iy~~e~~l~e~~~~~kl~~eek~~i~~~i~e~~~wL~~-~~~a~~e~i~~k~~eL~~~~~~i~~k 81 (113)
T 3lof_A 3 AAAERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDA-NTLAEKDEFEHKRKELEQVCNPIISG 81 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCGGGBTTBCHHHHHHHHHHHHHHHHHHHH-CTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHHHHHc-CCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999766799999999999999999999999996 57789999999999999999999999
Q ss_pred HHhh
Q psy18164 1010 HREH 1013 (1212)
Q Consensus 1010 ~~e~ 1013 (1212)
++..
T Consensus 82 ~y~~ 85 (113)
T 3lof_A 82 LYQG 85 (113)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 9864
|
| >2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... | Back alignment and structure |
|---|
Probab=99.21 E-value=2.9e-11 Score=141.56 Aligned_cols=157 Identities=13% Similarity=0.145 Sum_probs=98.3
Q ss_pred ceEEEEEcCCcceEEEEEECCCceEEecCCCCCcccce-EEEEecCceeEccchhhhhccCCCChHHHHHHHhCCCCCCH
Q psy18164 36 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPT-LVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 114 (1212)
Q Consensus 36 ~~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS-~V~~~~~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~ 114 (1212)
+..|+||+||+++++++..++.+.-++++..|....++ .+.+.....++|.+|.... ..
T Consensus 5 ~~~ivID~Gs~~~k~G~~~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~vG~~a~~~~----~~---------------- 64 (375)
T 2fxu_A 5 TTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR----GI---------------- 64 (375)
T ss_dssp CCCEEEEECSSEEEEEETTCSSCSEEEECCEEEECTTTC-------CCEEHHHHHHHT----TS----------------
T ss_pred CceEEEECCCCeEEEEECCCCCCceeeccccccccccccccCCCCCCeEechhHhhcC----cc----------------
Confidence 46789999999999999866655444433222222221 1112223456777765431 00
Q ss_pred HHHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCc--cccEEEccCCCCCHHHHHHHH
Q psy18164 115 VVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQV--INEAVIIVPGYFNQIERQSML 192 (1212)
Q Consensus 115 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~--~~~~VitVPa~f~~~qr~~l~ 192 (1212)
..-..|. .+|.+ ... +.+..+++|+.. ..++.. ...+|||+|++++..+|+++.
T Consensus 65 ----~~~~~Pi-------~~G~i---------~d~-d~~e~i~~~~~~---~~L~~~~~~~~vvit~p~~~~~~~r~~~~ 120 (375)
T 2fxu_A 65 ----LTLKYPI-------EHGII---------TNW-DDMEKIWHHTFY---NELRVAPEEHPTLLTEAPLNPKANREKMT 120 (375)
T ss_dssp ----EEEECSE-------ETTEE---------CCH-HHHHHHHHHHHH---TTSCCCGGGSCEEEEECTTCCHHHHHHHH
T ss_pred ----cceeccc-------cCCcc---------cCH-HHHHHHHHHHHH---HhcCCCCcCCcEEEEeCCCCcHHHHHHHH
Confidence 0001111 11221 111 344555555542 234432 245999999999999999888
Q ss_pred HHH-HHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEE
Q psy18164 193 KAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIV 247 (1212)
Q Consensus 193 ~Aa-~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv 247 (1212)
+++ +.+|++.+.+++||+|||++|+. .+.||+|+||||||++.+
T Consensus 121 e~~fe~~g~~~~~~~~e~~aaa~a~g~-----------~~~lVvDiG~gtt~v~~v 165 (375)
T 2fxu_A 121 QIMFETFNVPAMYVAIQAVLSLYASGR-----------TTGIVLDSGDGVTHNVPI 165 (375)
T ss_dssp HHHHHTTCCSEEEEEEHHHHHHHHTTC-----------SSEEEEEECSSCEEEEEE
T ss_pred HHHHHhcCcceEEEccchheeeeecCC-----------CeEEEEEcCCCceEEeEe
Confidence 775 88899999999999999998874 257999999999998766
|
| >3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.7e-10 Score=137.58 Aligned_cols=179 Identities=14% Similarity=0.088 Sum_probs=119.2
Q ss_pred ceEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEec----CcEeecHHHHHhhhhCCCchHhHhHHhcCCCC
Q psy18164 283 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK----GERTFGEDAQIIGTRFPSNSYGYFLDLLGKSI 358 (1212)
Q Consensus 283 ~~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~----~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~ 358 (1212)
...|+||+||.++++++...+.|.- .+||+|+... ...+||.+|.... +.
T Consensus 23 ~~~iVID~GS~~~kaG~ag~~~P~~---------v~PSvVg~~~~~~~~~~~vG~e~~~~~---r~-------------- 76 (498)
T 3qb0_A 23 VSAVVIDPGSYTTNIGYSGSDFPQS---------ILPSVYGKYTADEGNKKIFSEQSIGIP---RK-------------- 76 (498)
T ss_dssp BSCEEEECCSSEEEEEETTCSSCSE---------EEESEEEEESSCSSCCEECCTTGGGSC---CT--------------
T ss_pred CCeEEEECCCcEEEEEECCCCCeee---------ecCceeEEeccCCCccEEEecHHHhcC---cC--------------
Confidence 4568999999999999987664432 3699999843 2467787642210 00
Q ss_pred CCHHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCc--cc-eEEEecCCCCCHHHH
Q psy18164 359 DSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQV--IN-EAVIIVPGYFNQIER 435 (1212)
Q Consensus 359 ~~~~v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~--i~-~~VItVP~~f~~~qR 435 (1212)
.-.+...+.+|. +.--+.+..+++|+... .++.. -. .++||.|+......|
T Consensus 77 ----------------------~l~l~~Pi~~Gv-I~dwd~~E~iw~~~f~~---~L~v~p~~~~pvlltep~~n~~~~R 130 (498)
T 3qb0_A 77 ----------------------DYELKPIIENGL-VIDWDTAQEQWQWALQN---ELYLNSNSGIPALLTEPVWNSTENR 130 (498)
T ss_dssp ----------------------TEEEEESEETTE-ESCHHHHHHHHHHHHHH---TSCCSCCTTCCEEEEECTTCCHHHH
T ss_pred ----------------------ceEEeccCcCCE-EccHHHHHHHHHHHHHh---hhCCCcccCCceEEEeCCCCcHHHH
Confidence 001111122232 22233445566665532 23321 22 589999999999999
Q ss_pred HHHHHHH-HHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEE
Q psy18164 436 QSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVS 514 (1212)
Q Consensus 436 ~al~~Aa-~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~ 514 (1212)
+.+.+.+ +..|+.-+.++.++.||++++|.. . -||+|+|+|+|+++.|. .|..
T Consensus 131 e~~~eilFE~f~vpav~l~~~~vlalya~G~~----------t-glVVDiG~g~T~vvPI~--------~G~~------- 184 (498)
T 3qb0_A 131 KKSLEVLLEGMQFEACYLAPTSTCVSFAAGRP----------N-CLVVDIGHDTCSVSPIV--------DGMT------- 184 (498)
T ss_dssp HHHHHHHHTTSCCSEEEEEEHHHHHHHHHTCS----------S-EEEEEECSSCEEEEEEE--------TTEE-------
T ss_pred HHHHHHHHhhcCCCeEeecchHHHHHHHcCCC----------e-EEEEEcCCCcEEEEEEe--------CCEE-------
Confidence 9999975 778999999999999999887651 1 39999999999999885 2411
Q ss_pred EEEEecCCCCChHHHHHHHHHHHHH
Q psy18164 515 VLGVGYDRTLGGLEMQIRLRDFLGK 539 (1212)
Q Consensus 515 vl~~~~d~~lGG~~~D~~l~~~l~~ 539 (1212)
+........+||+++|..|.++|..
T Consensus 185 l~~ai~rl~vgG~~lt~~L~~lL~~ 209 (498)
T 3qb0_A 185 LSKSTRRNFIAGKFINHLIKKALEP 209 (498)
T ss_dssp CGGGCEEESCSHHHHHHHHHHHTTT
T ss_pred ccccceeccccHHHHHHHHHHHHHh
Confidence 1111112479999999999999864
|
| >2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.7e-11 Score=143.79 Aligned_cols=176 Identities=18% Similarity=0.050 Sum_probs=115.6
Q ss_pred eEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEecCceeEccchhhhhccCCCChHHHHHHHhCCCCCCHHH
Q psy18164 37 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVV 116 (1212)
Q Consensus 37 ~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~~~ 116 (1212)
.++|||+||+++++++..+|+ +.+ +..|...+||.+ .+.....++..+...+|+++++.
T Consensus 14 ~~vgiDiGt~~i~~~~~~~~~-~~i--~~~g~~~~ps~~------------~~~g~i~d~~~~~~~ik~~~~~~------ 72 (377)
T 2ych_A 14 EALGLEIGASALKLVEVSGNP-PAL--KALASRPTPPGL------------LMEGMVAEPAALAQEIKELLLEA------ 72 (377)
T ss_dssp CCEEEEECSSEEEEEEEETTT-TEE--EEEEEEECCTTS------------EETTEESCHHHHHHHHHHHHHHH------
T ss_pred ceEEEEeCCCeEEEEEEeCCc-eEE--EEEEeEECCCCc------------ccCCCcCCHHHHHHHHHHHHHHc------
Confidence 579999999999999987553 333 233555566632 12334567778888999988641
Q ss_pred HHHHhcCCceee-eccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHH--------
Q psy18164 117 QLFKSRFPYYDI-VADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIE-------- 187 (1212)
Q Consensus 117 ~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~q-------- 187 (1212)
......+ +.-.+........ ....++++++-.. ++..++.+++.++.++||.+|. .+.+
T Consensus 73 -----~~~~~~v~~~i~~~~~~~~~~-~~~~v~~~el~~~----i~~ea~~~~~~~~~~~vid~~~--~~~~~~~~~~~~ 140 (377)
T 2ych_A 73 -----RTRKRYVVTALSNLAVILRPI-QVPKMPLKEMEEA----VRWEAERYIPFPIDEVVLDFAP--LTPLSEVQEGEQ 140 (377)
T ss_dssp -----TCCCCEEEEEECGGGCEEEEE-EEECCCHHHHHHH----HHHHHGGGCSSCC-CEEEEEEE--SSCGGGSCTTSE
T ss_pred -----CCCcceEEEEecCCcEEEEEE-ECCCCCHHHHHHH----HHHHHhhcCCCChhHceEEEEE--eCCCCCCCCcce
Confidence 0111111 1111111111111 1235778776653 3446777888889999999873 2222
Q ss_pred ------------HHHHHHHHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEE
Q psy18164 188 ------------RQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSY 249 (1212)
Q Consensus 188 ------------r~~l~~Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~ 249 (1212)
.+.+++|++.||+++..++.||.|||++|+..... ..+..++|+|+||||||+++++-
T Consensus 141 ~~v~~va~~~~~v~~~~~~~~~aGl~~~~i~~ep~Aaa~~~~~~~~~----~~~~~~~vvDiGggttdi~i~~~ 210 (377)
T 2ych_A 141 VQVMVAAARQEAVAGVLEALRGAGLVPVVLDVKPFAGLYPLEARLAE----EPDRVFLVLDIGAESTSLVLLRG 210 (377)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHHTTCEEEEEEEHHHHTTGGGHHHHHT----STTCEEEEEEECSSCEEEEEEET
T ss_pred eEEEEEEecHHHHHHHHHHHHHCCCceEEEecchHHHHHHHHhhccc----ccCCeEEEEEECCCcEEEEEEEC
Confidence 48899999999999999999999999988653321 12357999999999999999863
|
| >3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.3e-11 Score=141.50 Aligned_cols=223 Identities=14% Similarity=0.105 Sum_probs=140.4
Q ss_pred ceEEEecCCCCCHHHHHHHHHHH-HHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEe
Q psy18164 420 NEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQV 498 (1212)
Q Consensus 420 ~~~VItVP~~f~~~qR~al~~Aa-~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~ 498 (1212)
..++||.|+..+...|+.+.+.+ +..|+..+.++.++.+|+++.+.... ..+. ...-||+|+|+|+|+++.+.
T Consensus 124 ~pvlltep~~~~~~~re~~~ei~FE~~~~p~v~l~~~~vla~~a~G~~~~--~~~~-~~tglVVDiG~g~T~v~PV~--- 197 (427)
T 3dwl_A 124 HYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSK--VTDR-SLTGTVVDSGDGVTHIIPVA--- 197 (427)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTTTCCSEEEEEEHHHHHHHGGGGSTT--TCSC-CCCEEEEEESSSCEEEEEEE---
T ss_pred CcEEEEcCCCCCHHHHHHHHHHHHHhccCceeeecchHHHHHHhcCCccc--ccCC-CceEEEEECCCCceEEEEEE---
Confidence 46999999999999999999988 77899999999999999988875321 1111 34579999999999999984
Q ss_pred eecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCce-
Q psy18164 499 VKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNE- 577 (1212)
Q Consensus 499 ~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~~- 577 (1212)
.|.. +........+||+++|..|.++|..+... ... ...++.+|+.+..-..
T Consensus 198 -----~G~~-------l~~~~~rl~~gG~~lt~~L~~lL~~~~~~--------~~~-------~~~~~~IKe~~cyv~~d 250 (427)
T 3dwl_A 198 -----EGYV-------IGSSIKTMPLAGRDVTYFVQSLLRDRNEP--------DSS-------LKTAERIKEECCYVCPD 250 (427)
T ss_dssp -----TTEE-------CGGGCEEESCCHHHHHHHHHHTTC-----------------------CHHHHHHHHHHCCCCSC
T ss_pred -----CCEE-------ehhhheeccccHHHHHHHHHHHHHHcCCC--------chh-------HHHHHHHHHhcCcccCC
Confidence 2421 11111124799999999999888655321 000 1234445544332110
Q ss_pred ----------eEEEEee--c--ccCcceEEEEeHHHH---HHHHHHH------HHHHHHHHHHHHHhcCCC--CCCccEE
Q psy18164 578 ----------HFAQIEG--L--IDEIDFKLLVTRAEF---EALNEDL------FDRVGYPVEQALKSSAVP--MDVISQV 632 (1212)
Q Consensus 578 ----------~~i~ie~--l--~~~~d~~~~itR~ef---e~l~~~l------~~~i~~~i~~~L~~a~~~--~~~i~~V 632 (1212)
....+.. + .++....+.|..+.| |-|++|- ...|.++|.++|..+... .+-...|
T Consensus 251 ~~~e~~~~~~~~~~~~~~~l~~~~g~~~~i~ig~erf~~pE~LF~P~~~g~~~~~gI~~~i~~sI~~c~~dlr~~L~~nI 330 (427)
T 3dwl_A 251 IVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNI 330 (427)
T ss_dssp HHHHHHHTTC-----CCBCC---------CBCCTHHHHSGGGGTCGGGTCSSCCSCHHHHHHHHHHTSCHHHHHHHHHCE
T ss_pred HHHHHHHhhcCccccceeEeeCCCCCeeEEEEChHhhhChhhccCchhcCCccCCCccHHHHHHHHhCCHHHHHHHhCCE
Confidence 0000111 1 233334567777776 3344441 235778888888776432 1223569
Q ss_pred EEEcCCcCCHHHHHHHHHHhC----------------------CcccCCCCchhHHHhhHHHHHH
Q psy18164 633 ILVGAGTRVPKVQEKITKVVG----------------------VELSKNLNTDEAAALGAVYKAA 675 (1212)
Q Consensus 633 iLvGGssriP~Vq~~l~~~fg----------------------~~i~~~~n~deaVA~GAa~~aa 675 (1212)
+|+||+|.+|.+.++|.+.+. .++..+.++..++=+|++++|.
T Consensus 331 vLtGG~sl~~G~~~RL~~El~~l~~~~~~~~~~~~~~~p~~~~vkv~~~~~r~~s~WiGGSilas 395 (427)
T 3dwl_A 331 VLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQ 395 (427)
T ss_dssp EEESGGGCSTTTTHHHHHHHHHHHTTC-------------CCCCCEECCTTCTTHHHHHHHHHHH
T ss_pred EEEccCcCCCChHHHHHHHHHHhhhhhccccccccccCCCceeEEEecCCccccceecCceeecc
Confidence 999999999999988876552 1233345677899999999986
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} | Back alignment and structure |
|---|
Probab=99.02 E-value=8.8e-10 Score=122.98 Aligned_cols=87 Identities=16% Similarity=0.174 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHHHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCe
Q psy18164 151 ELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPV 230 (1212)
Q Consensus 151 ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~ 230 (1212)
+....+|+++++.+....+..+..+|+++|++|...+|+.++++++.+|++...++.||+|++++|+..
T Consensus 71 ~~~~~~l~~~~~~~~~~~~~~~~~~v~tvp~~~~~~~~~~~~~~~~~~g~~~~~i~~e~~A~a~~~~~~----------- 139 (272)
T 3h1q_A 71 IGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPVAAARALGIN----------- 139 (272)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCCCEEEEECCSCC---CTTHHHHHHHHTTCEEEEEECHHHHHHHHHTCS-----------
T ss_pred HHHHHHHHHHHHHHHHhcCCccCeEEEEcCCCCCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHHcCC-----------
Confidence 566788899999998888888889999999999999999999999999999999999999999988742
Q ss_pred EEEEEecCCceEEEEEEE
Q psy18164 231 HVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 231 ~vlV~D~GggT~Dvsvv~ 248 (1212)
..+|+|+||||+|++++.
T Consensus 140 ~~~viDiGggst~~~~~~ 157 (272)
T 3h1q_A 140 DGIVVDIGGGTTGIAVIE 157 (272)
T ss_dssp SEEEEEECSSCEEEEEEE
T ss_pred CEEEEEECCCcEEEEEEE
Confidence 259999999999999986
|
| >4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.96 E-value=7e-08 Score=119.95 Aligned_cols=102 Identities=12% Similarity=0.245 Sum_probs=78.3
Q ss_pred HHcCCccc-----eEEEecCCCCCHHHHHHHHHHH-HHcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCC
Q psy18164 413 VSAGQVIN-----EAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGA 486 (1212)
Q Consensus 413 ~~~~~~i~-----~~VItVP~~f~~~qR~al~~Aa-~~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gg 486 (1212)
..++.... .+++|.|..++...|+.|.+-+ +..|+..+.++.++.+|++++|. .+-+|+|+|+
T Consensus 187 ~~L~i~~~d~~~~pvlltep~~~~~~~re~~~eilFE~f~~pa~~~~~~~vla~ya~G~-----------~tglVVDiG~ 255 (593)
T 4fo0_A 187 KYLEIPLKDLKYYRCILLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGL-----------SSTCIVDVGD 255 (593)
T ss_dssp HTSCCCGGGGGGCEEEEEECSSCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHHTC-----------SEEEEEEECS
T ss_pred HhcCCCchhccCCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEeechHHHHHHHCCC-----------CceEEEEeCC
Confidence 45664443 3999999999999998887665 45699999999999999988754 3458999999
Q ss_pred CceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHH
Q psy18164 487 WSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKK 540 (1212)
Q Consensus 487 gt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~ 540 (1212)
+.|.|+-|. .|+.-.+.... ..+||++++..|.++|..+
T Consensus 256 ~~T~v~PV~--------dG~~l~~~~~r-------l~~GG~~lt~~L~~lL~~~ 294 (593)
T 4fo0_A 256 QKTSVCCVE--------DGVSHRNTRLC-------LAYGGSDVSRCFYWLMQRA 294 (593)
T ss_dssp SCEEEEEEE--------SSCBCGGGCEE-------ESCCHHHHHHHHHHHHHHT
T ss_pred CceeeeeeE--------CCEEehhheEE-------ecccHHHHHHHHHHHHHhc
Confidence 999998875 35332222322 3699999999999988765
|
| >2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.91 E-value=1e-09 Score=105.98 Aligned_cols=82 Identities=28% Similarity=0.449 Sum_probs=73.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhHHHHHH
Q psy18164 930 AKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLVVPIWER 1009 (1212)
Q Consensus 930 ~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~~~Kl~eL~~~~~pi~~R 1009 (1212)
-++++.++||.||+|||++|..|.++.+...+++++|++|...|+++.+||++ +.++++++|+.++++|++++.||..|
T Consensus 12 ~~re~iEarN~aEsliy~~e~~L~e~~~~dkl~~eek~~I~~~i~el~~~L~~-~~~ad~e~ik~k~~eL~~~~~~i~~k 90 (120)
T 2p32_A 12 SGLVPRGSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDS-NQTAEKEEFEHQQKDLEGLANPIISK 90 (120)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHTCTTTGGGSCHHHHHHHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhhhccCCHHHHHHHHHHHHHHHHHHHc-CCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999755588899999999999999999999985 46789999999999999999999998
Q ss_pred HHh
Q psy18164 1010 HRE 1012 (1212)
Q Consensus 1010 ~~e 1012 (1212)
++.
T Consensus 91 ~y~ 93 (120)
T 2p32_A 91 LYQ 93 (120)
T ss_dssp HCC
T ss_pred HHH
Confidence 864
|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1.7e-09 Score=123.65 Aligned_cols=95 Identities=14% Similarity=0.157 Sum_probs=62.5
Q ss_pred cceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCC-CCHH--HH--HHHHH--------H----HHHcCCceEEEe
Q psy18164 144 NELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGY-FNQI--ER--QSMLK--------A----GELAGLKVLQLM 206 (1212)
Q Consensus 144 ~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~-f~~~--qr--~~l~~--------A----a~~AGl~~~~li 206 (1212)
+..+++..+++.+ ..|+. +.. .+.++ ++|+++|+. |... || .++.+ + ++.+++..+.++
T Consensus 71 ~~~~~~~~l~~i~-~aL~~-~~~-~~~~~-~lv~glP~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~v~~~ 146 (320)
T 2zgy_A 71 AWQYSDVNVVAVH-HALLT-SGL-PVSEV-DIVCTLPLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVM 146 (320)
T ss_dssp GGGGSHHHHHHHH-HHHHH-HSC-CSCEE-EEEEEECHHHHBCTTSSBCHHHHHHHHHHTTSCEEETTBCCCEEEEEEEE
T ss_pred CccchHHHHHHHH-HHHHH-cCC-CCceE-EEEEcCCHHHHccCCCcccHHHHHHHHHhhcCcEecCCCcEEEEEEEEEe
Confidence 3457777777654 44443 211 23333 699999987 6531 21 11111 1 345567789999
Q ss_pred cchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEE
Q psy18164 207 NDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 207 ~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~ 248 (1212)
.||.||+++|..... ....++|+|+||||+|+++++
T Consensus 147 ~e~~aa~~~~~~~~~------~~~~~~vvDiGggttd~~v~~ 182 (320)
T 2zgy_A 147 PESIPAGYEVLQELD------ELDSLLIIDLGGTTLDISQVM 182 (320)
T ss_dssp ESSHHHHHHHHHHSC------TTCEEEEEEECSSCEEEEEEE
T ss_pred cCcHHHHHhhhcccc------CCCCEEEEEcCCCeEEEEEEe
Confidence 999999998863211 235899999999999999997
|
| >1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.9e-09 Score=103.11 Aligned_cols=79 Identities=25% Similarity=0.435 Sum_probs=69.9
Q ss_pred HHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhHHHHHHHHhh
Q psy18164 934 KEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLVVPIWERHREH 1013 (1212)
Q Consensus 934 ~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~~~Kl~eL~~~~~pi~~R~~e~ 1013 (1212)
+.++||.||+|||++|..|.++++...+++++|++|...|.++.+||++ +.++++++|++++++|++++.||..|+++.
T Consensus 2 l~EarN~aE~~iy~~e~~L~~~e~~~kl~~~ek~~i~~~i~~l~~~L~~-~~~ad~~~i~~~~~~L~~~~~~i~~~~~~~ 80 (113)
T 1ud0_A 2 VPRGSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDK-NQTAEKEEFEHQQKELEKVCNPIITKLYQS 80 (113)
T ss_dssp --CCHHHHHHHHHHHHHHHTSGGGTTTSCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHHHHHc-CCccCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5689999999999999999755788999999999999999999999973 455678999999999999999999998753
|
| >1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-09 Score=128.82 Aligned_cols=65 Identities=12% Similarity=0.092 Sum_probs=15.2
Q ss_pred ccEEEccCCCCCHHHHHHHHHHH-HHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEE
Q psy18164 173 NEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 173 ~~~VitVPa~f~~~qr~~l~~Aa-~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~ 248 (1212)
..++||+|+.++..+|+.+.+++ +.+|++.+.+++||.||+++++. ...||+|+|+|||+++.+.
T Consensus 105 ~~vllt~p~~~~~~~r~~~~e~~fe~~~~~~~~~~~~~~~a~~a~g~-----------~~~lVVDiG~g~T~v~pv~ 170 (394)
T 1k8k_B 105 CKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGL-----------LTGVVVDSGDGVTHICPVY 170 (394)
T ss_dssp ------------------------------------------------------------CCEEEECSSCEEEECEE
T ss_pred CcEEEEECCCCCHHHHHHHHHHhhhccCCCeEEEEhhHHHHHHhCCC-----------ceEEEEEcCCCceEeeeeE
Confidence 35999999999999999998866 78899999999999999998874 2569999999999998763
|
| >2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A | Back alignment and structure |
|---|
Probab=98.70 E-value=6.9e-08 Score=112.21 Aligned_cols=197 Identities=18% Similarity=0.121 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHc-CC--CeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCcccc
Q psy18164 433 IERQSMLKAGELA-GL--KVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVET 509 (1212)
Q Consensus 433 ~qR~al~~Aa~~A-Gl--~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~ 509 (1212)
.+-+.+.+|.+.+ |+ ++-. -||.||+++....... +..++++||||||||++|+. .|
T Consensus 368 ~~m~NI~~cVer~~gL~veV~g--~ep~AAglaaLTeDE~------eLGvaiIDmGGGTTd~sVf~--------~G---- 427 (610)
T 2d0o_A 368 LQMAMIAREIEQKLNIDVQIGG--AEAEAAILGALTTPGT------TRPLAILDLGAGSTDASIIN--------PK---- 427 (610)
T ss_dssp CCHHHHHHHHHHHHCCEEEEEE--EHHHHHHHHHTTSTTC------CSSEEEEEECSSEEEEEEEC--------TT----
T ss_pred HHHHHHHHHHHhccCCcceecc--ccHHHhhhhhcCCCCC------cCCeEEEEeCCCcceEEEEc--------CC----
Confidence 3567788888999 99 7767 8999999877554322 56799999999999999996 22
Q ss_pred CCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCc---------eeEE
Q psy18164 510 HPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANN---------EHFA 580 (1212)
Q Consensus 510 ~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~---------~~~i 580 (1212)
.+ -+......||+.++..|+.-|.-. | +..||++|.-=++.. .-.+
T Consensus 428 --~l---v~a~~ip~gG~~VT~DIA~~Lgt~---------d-----------~~~AErIK~YG~A~ve~lf~~~dede~I 482 (610)
T 2d0o_A 428 --GD---IIATHLAGAGDMVTMIIARELGLE---------D-----------RYLAEEIKKYPLAKVESLFHLRHEDGSV 482 (610)
T ss_dssp --CC---EEEEEEECSHHHHHHHHHHHHTCC---------C-----------HHHHHHHHHSCEEEECSSSEEEETTSCE
T ss_pred --cE---EEEEEeccchHHHHHHHHHHhCCC---------C-----------HHHHHHhcccCceeecccccccCCCCeE
Confidence 11 111224589999998887555211 0 235788887211111 1134
Q ss_pred EE--eecc----cC-----cceEEEEeHHH--HHHHHHHHHHHHHHH--HHHHHHhcCC-----CCCCccEEEEEcCCcC
Q psy18164 581 QI--EGLI----DE-----IDFKLLVTRAE--FEALNEDLFDRVGYP--VEQALKSSAV-----PMDVISQVILVGAGTR 640 (1212)
Q Consensus 581 ~i--e~l~----~~-----~d~~~~itR~e--fe~l~~~l~~~i~~~--i~~~L~~a~~-----~~~~i~~ViLvGGssr 640 (1212)
.+ +.+- .- .+--..| |.. +|+ ++-+-+++.+. +.++|+..+. +..+|..|+|+||+|.
T Consensus 483 ev~~~~lgp~~~~Rv~~~~~~~L~~I-~pR~~vEE-lelVR~~ak~~vfv~n~Lralg~~~~~g~~r~i~~VVLTGGsSq 560 (610)
T 2d0o_A 483 QFFSTPLPPAVFARVCVVKADELVPL-PGDLALEK-VRAIRRSAKERVFVTNALRALRQVSPTGNIRDIPFVVLVGGSSL 560 (610)
T ss_dssp EECSSCCCGGGTTCEEEECSSCEEEC-CTTCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHSSSSCGGGCCEEEEESGGGG
T ss_pred EEecCCCCcceeeeeecccccceeee-CCCcchHH-HHHHHHHHhhhhhhHHHHHhcCCccCCCcccccCCEEEeCchhh
Confidence 44 2221 11 0112355 666 777 66555555544 3344555332 3567899999999999
Q ss_pred CHHHHHHHHHHhCC-cc-------cCCCCchhHHHhhHHHHHHh
Q psy18164 641 VPKVQEKITKVVGV-EL-------SKNLNTDEAAALGAVYKAAD 676 (1212)
Q Consensus 641 iP~Vq~~l~~~fg~-~i-------~~~~n~deaVA~GAa~~aa~ 676 (1212)
+|.+.++..+.|+. .+ ...-+|..|+|.|.+++.+.
T Consensus 561 l~GI~ElA~~iL~~y~VRiGrP~~~gv~gP~fAtAvGLlly~~~ 604 (610)
T 2d0o_A 561 DFEVPQLVTDALAHYRLVAGRGNIRGSEGPRNAVATGLILSWHK 604 (610)
T ss_dssp CSSHHHHHHHHTTTSSCEEEECCGGGTSTTSCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHhCcCCeEEecCCccccCCCcHHHHHHHHHHHhh
Confidence 99999999999985 33 22458999999999977653
|
| >1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 | Back alignment and structure |
|---|
Probab=98.69 E-value=4.6e-08 Score=114.15 Aligned_cols=202 Identities=15% Similarity=0.085 Sum_probs=130.2
Q ss_pred EEecCCCCCHHHHHHHHHHHHHc-CC--CeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEee
Q psy18164 423 VIIVPGYFNQIERQSMLKAGELA-GL--KVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVV 499 (1212)
Q Consensus 423 VItVP~~f~~~qR~al~~Aa~~A-Gl--~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~ 499 (1212)
+|+....+ -+.+.+|.+.+ |+ ++-. -||.||+++....... +..++++||||||||++++.
T Consensus 364 mVt~~~~~----m~NI~~~Ver~~gL~veV~g--~ep~AA~laaLTedE~------elGvaiIDmGgGTTd~sVf~---- 427 (607)
T 1nbw_A 364 MVKADRLQ----MQVIARELSARLQTEVVVGG--VEANMAIAGALTTPGC------AAPLAILDLGAGSTDAAIVN---- 427 (607)
T ss_dssp EEECCCCC----SCCHHHHHHHHHTSEEEECS--CHHHHHHHHHTTSTTC------CSSEEEEEECSSEEEEEEEC----
T ss_pred eeecCHHH----HHHHHHHHHhccCCcceecc--ccHHHhhhhhcCCCCC------cCCeEEEEeCCCcceEEEEc----
Confidence 44444443 34577778888 88 6656 8999999877554322 56799999999999999996
Q ss_pred ecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHhhhhccCCc---
Q psy18164 500 KTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANN--- 576 (1212)
Q Consensus 500 ~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~kL~~~aek~K~~LS~n~--- 576 (1212)
.| .+ -+......||+.++..|+.-|.-. | +..||++|.-=++..
T Consensus 428 ----~g------~l---v~a~~ip~gG~~VT~DIA~~Lg~~---------d-----------~~~AErIK~YG~A~~e~l 474 (607)
T 1nbw_A 428 ----AE------GQ---ITAVHLAGAGNMVSLLIKTELGLE---------D-----------LSLAEAIKKYPLAKVESL 474 (607)
T ss_dssp ----SS------SC---EEEEEEECCHHHHHHHHHHHHTCS---------C-----------HHHHHHHHHSCEEEECSS
T ss_pred ----CC------cE---EEEEEeccchHHHHHHHHHHhCCC---------C-----------HHHHHHhcccCceeeccc
Confidence 12 11 111224589999998887555211 0 235788887211111
Q ss_pred ------eeEEEE--eecc----cC-----cceEEEEeHHH--HHHHHHHHHHHHHHH--HHHHHHhcCC-----CCCCcc
Q psy18164 577 ------EHFAQI--EGLI----DE-----IDFKLLVTRAE--FEALNEDLFDRVGYP--VEQALKSSAV-----PMDVIS 630 (1212)
Q Consensus 577 ------~~~i~i--e~l~----~~-----~d~~~~itR~e--fe~l~~~l~~~i~~~--i~~~L~~a~~-----~~~~i~ 630 (1212)
.-.+.+ +.+- .- .+--..| |.. +|+ ++-+-+++.+. +.++|+..+. +..+|.
T Consensus 475 f~~~dede~Iev~~~~lgp~~~~R~~~~~~~~L~~I-~~R~~vEE-lelVR~~ak~~vfv~n~Lralg~~~~~g~~r~i~ 552 (607)
T 1nbw_A 475 FSIRHENGAVEFFREALSPAVFAKVVYIKEGELVPI-DNASPLEK-IRLVRRQAKEKVFVTNCLRALRQVSPGGSIRDIA 552 (607)
T ss_dssp SEEEETTSCEEECSSCCCGGGTTCEEEEETTEEEEE-CCSSCHHH-HHHHHHHHHHHHHHHHHHHHHSSSSTTCCSTTCC
T ss_pred ccccCCCCeEEEecCCCCcceeeeeecccccceeee-CCCcchHH-HHHHHHHHhhhhhhHHHHHhcCCcccCCcccccC
Confidence 113444 2221 11 0112355 566 776 55555555544 4555777654 346789
Q ss_pred EEEEEcCCcCCHHHHHHHHHHhCC-cc-------cCCCCchhHHHhhHHHHHH
Q psy18164 631 QVILVGAGTRVPKVQEKITKVVGV-EL-------SKNLNTDEAAALGAVYKAA 675 (1212)
Q Consensus 631 ~ViLvGGssriP~Vq~~l~~~fg~-~i-------~~~~n~deaVA~GAa~~aa 675 (1212)
.|+|+||+|.+|.+.++..+.|+. .+ ...-+|..|+|.|.+++.+
T Consensus 553 ~VVLTGGsSql~gI~elA~~iL~~~~VRiGrP~~~g~~gP~fAtAvGLlly~~ 605 (607)
T 1nbw_A 553 FVVLVGGSSLDFEIPQLITEALSHYGVVAGQGNIRGTEGPRNAVATGLLLAGQ 605 (607)
T ss_dssp EEEEESGGGGSSSHHHHHHHHHHTTTCEEEECCGGGTSCSCCHHHHHHHHHHH
T ss_pred CEEEeCchhhcccHHHHHHHHhCcCCeEEecCCccccCCchHHHHHHHHHhhh
Confidence 999999999999999999999975 32 2245899999999997653
|
| >4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=9.9e-08 Score=112.63 Aligned_cols=57 Identities=12% Similarity=-0.065 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEE
Q psy18164 186 IERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 186 ~qr~~l~~Aa~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~ 248 (1212)
...+.+.+|++.|||++..++.||.|||++|...... ...++|+|+||||||+++++
T Consensus 168 ~~v~n~~~~~~~AGL~v~~lv~ep~Aaa~a~l~~~~~------~~gv~vvDiGggttdisi~~ 224 (419)
T 4a2a_A 168 KVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLTTPEK------DRGVVVVNLGYNFTGLIAYK 224 (419)
T ss_dssp HHHHHHHHHHHTTSCSCEEEEEHHHHHHHHHCCHHHH------HHCEEEEEECSSSEEEEEEE
T ss_pred HHHHHHHHHHHHcCCcEEEEEEHHHHHHHHhhccccc------cCCEEEEEECCCcEEEEEEE
Confidence 4567899999999999999999999999988653322 24699999999999999987
|
| >3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.38 E-value=3.2e-07 Score=105.86 Aligned_cols=75 Identities=13% Similarity=0.089 Sum_probs=57.3
Q ss_pred ccEEEccCCCCCHHHH-HHHHHHHHHcCC------------ceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCC
Q psy18164 173 NEAVIIVPGYFNQIER-QSMLKAGELAGL------------KVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGA 239 (1212)
Q Consensus 173 ~~~VitVPa~f~~~qr-~~l~~Aa~~AGl------------~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~Gg 239 (1212)
..+|+++|..+...+| +++++++...+- ..+.+++||.||++++..........-.+..+||+|+||
T Consensus 114 ~~lvvGLP~~~~~~~k~~~l~~~l~~~~~v~~~g~~~~i~I~~V~v~pE~~~a~~~~~~~~~~~~~~~~~~~~~vvDiGg 193 (355)
T 3js6_A 114 VVIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINVKGVKIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGS 193 (355)
T ss_dssp EEEEEEECGGGTTSHHHHHHHHHHSSCEEEEETTEEEEEEEEEEEEEEHHHHHHHHTTEETTEECHHHHTCEEEEEEECS
T ss_pred EEEEEeCCHHHHhHHHHHHHHHHhCCCeEEEECCEEEEEEEEEEEEEeCcHHHHHHHHHccCccccccccCcEEEEEeCC
Confidence 3789999999888887 589999885543 577899999999999875431100000246899999999
Q ss_pred ceEEEEEE
Q psy18164 240 WSTTVSIV 247 (1212)
Q Consensus 240 gT~Dvsvv 247 (1212)
||+|++++
T Consensus 194 gTtd~~v~ 201 (355)
T 3js6_A 194 GTTIIDTY 201 (355)
T ss_dssp SCEEEEEE
T ss_pred CcEEEEEE
Confidence 99999998
|
| >3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.3e-06 Score=104.25 Aligned_cols=151 Identities=17% Similarity=0.166 Sum_probs=101.5
Q ss_pred CceEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEec----CceeEccchhhhhccCCCChHHHHHHHhCCC
Q psy18164 35 GIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK----GERTFGEDAQIIGTRFPSNSYGYFLDLLGKS 110 (1212)
Q Consensus 35 ~~~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~----~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~ 110 (1212)
.+..|+||+||.++.+++...+.+.-+ +||+|+... ...++|.+|.... +.+
T Consensus 22 e~~~iVID~GS~~~kaG~ag~~~P~~v---------~PSvVg~~~~~~~~~~~vG~e~~~~~---r~~------------ 77 (498)
T 3qb0_A 22 EVSAVVIDPGSYTTNIGYSGSDFPQSI---------LPSVYGKYTADEGNKKIFSEQSIGIP---RKD------------ 77 (498)
T ss_dssp CBSCEEEECCSSEEEEEETTCSSCSEE---------EESEEEEESSCSSCCEECCTTGGGSC---CTT------------
T ss_pred CCCeEEEECCCcEEEEEECCCCCeeee---------cCceeEEeccCCCccEEEecHHHhcC---cCc------------
Confidence 356789999999999998765544333 599999853 2467787632211 000
Q ss_pred CCCHHHHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCc--cc-cEEEccCCCCCHHH
Q psy18164 111 IDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQV--IN-EAVIIVPGYFNQIE 187 (1212)
Q Consensus 111 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~--~~-~~VitVPa~f~~~q 187 (1212)
..-..|. .+|.+ .. -+.+..+++|+... .++.. -. .++||.|...+...
T Consensus 78 --------l~l~~Pi-------~~GvI---------~d-wd~~E~iw~~~f~~---~L~v~p~~~~pvlltep~~n~~~~ 129 (498)
T 3qb0_A 78 --------YELKPII-------ENGLV---------ID-WDTAQEQWQWALQN---ELYLNSNSGIPALLTEPVWNSTEN 129 (498)
T ss_dssp --------EEEEESE-------ETTEE---------SC-HHHHHHHHHHHHHH---TSCCSCCTTCCEEEEECTTCCHHH
T ss_pred --------eEEeccC-------cCCEE---------cc-HHHHHHHHHHHHHh---hhCCCcccCCceEEEeCCCCcHHH
Confidence 0001111 11211 11 24556666665532 23321 22 58999999999999
Q ss_pred HHHHHHHH-HHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEE
Q psy18164 188 RQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 188 r~~l~~Aa-~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~ 248 (1212)
|+.|.+.+ +.+|++.+.++.+|.||+++++.. +-||+|+|+|+++++.|-
T Consensus 130 Re~~~eilFE~f~vpav~l~~~~vlalya~G~~-----------tglVVDiG~g~T~vvPI~ 180 (498)
T 3qb0_A 130 RKKSLEVLLEGMQFEACYLAPTSTCVSFAAGRP-----------NCLVVDIGHDTCSVSPIV 180 (498)
T ss_dssp HHHHHHHHHTTSCCSEEEEEEHHHHHHHHHTCS-----------SEEEEEECSSCEEEEEEE
T ss_pred HHHHHHHHHhhcCCCeEeecchHHHHHHHcCCC-----------eEEEEEcCCCcEEEEEEe
Confidence 99999976 889999999999999999887641 249999999999999884
|
| >1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5 | Back alignment and structure |
|---|
Probab=98.28 E-value=1.8e-05 Score=87.78 Aligned_cols=71 Identities=18% Similarity=0.218 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhh
Q psy18164 603 LNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADL 677 (1212)
Q Consensus 603 l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~l 677 (1212)
++..+++.+..-+.+.++..++ .+.|+++||.++.|.+++.+.+.+|.++..+.+++.+.|+|||+.|+..
T Consensus 187 i~~av~e~Va~~i~~~~~~~~~----~~~i~~~GG~a~n~~~~~~~~~~lg~~v~~p~~~~~~~AlGAAl~A~~~ 257 (270)
T 1hux_A 187 IIAGIHRSVASRVIGLANRVGI----VKDVVMTGGVAQNYGVRGALEEGLGVEIKTSPLAQYNGALGAALYAYKK 257 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC----CSSEEEESGGGGCHHHHHHHHHHHCSCEECCGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCC----CCeEEEeCccccCHHHHHHHHHHHCCCeEeCCCcchHhHHHHHHHHHHh
Confidence 3334444444434444443321 3679999999999999999999999888888888889999999999753
|
| >4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A | Back alignment and structure |
|---|
Probab=97.93 E-value=1e-05 Score=90.09 Aligned_cols=50 Identities=8% Similarity=0.025 Sum_probs=37.3
Q ss_pred cCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEEEEeecccc
Q psy18164 198 AGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKE 256 (1212)
Q Consensus 198 AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~~~~~~~~~ 256 (1212)
++...+..|+||+|+++++.+.... ...|+|+|||+++++++. ..|...+
T Consensus 69 a~~~~~~~Vne~~aha~a~~~~~~~--------~~~vl~lgG~~~~~~~~~-~~g~~~~ 118 (276)
T 4ehu_A 69 NYSDADKQISELSCHARGVNFIIPE--------TRTIIDIGGQDAKVLKLD-NNGRLLN 118 (276)
T ss_dssp GCCSCSEECCHHHHHHHHHHHHSTT--------CCEEEEECSSCEEEEEEC-TTSCEEE
T ss_pred HhhCCCcccchHHHHHHHHHHhCCC--------CCeEEEEcCCCceEEEEE-ecCceEE
Confidence 5666778999999999887664432 347899999999999884 3444443
|
| >3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.86 E-value=1.5e-05 Score=94.09 Aligned_cols=91 Identities=9% Similarity=-0.085 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCc--cccEEEccCCCCCHHHHHHHHHHH-HHcCCceEEEecchhHHHHHhhhhcccCCCCC
Q psy18164 151 ELVAMLLHKAREYASVSAGQV--INEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNET 227 (1212)
Q Consensus 151 ev~~~~L~~l~~~a~~~~~~~--~~~~VitVPa~f~~~qr~~l~~Aa-~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~ 227 (1212)
+.+..+++|+.. ..++.. -..+++|.|...+...|+.+.+.+ +.+|++.+.++.+|.+|+++.+...... .
T Consensus 103 d~~e~iw~~~~~---~~L~v~~~~~pvlltep~~~~~~~re~~~ei~FE~~~~p~v~l~~~~vla~~a~G~~~~~~---~ 176 (427)
T 3dwl_A 103 DHMERFWQQSLF---KYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVT---D 176 (427)
T ss_dssp HHHHHHHHHHHH---TTSCCCGGGCEEEEEECTTCCHHHHHHHHHHHTTTTCCSEEEEEEHHHHHHHGGGGSTTTC---S
T ss_pred HHHHHHHHHHHh---HhhCCCCcCCcEEEEcCCCCCHHHHHHHHHHHHHhccCceeeecchHHHHHHhcCCccccc---C
Confidence 455556665543 234422 246999999999999999999988 7899999999999999998877432100 0
Q ss_pred CCeEEEEEecCCceEEEEEE
Q psy18164 228 NPVHVMFYDMGAWSTTVSIV 247 (1212)
Q Consensus 228 ~~~~vlV~D~GggT~Dvsvv 247 (1212)
...+-||+|+|+|+++++.|
T Consensus 177 ~~~tglVVDiG~g~T~v~PV 196 (427)
T 3dwl_A 177 RSLTGTVVDSGDGVTHIIPV 196 (427)
T ss_dssp CCCCEEEEEESSSCEEEEEE
T ss_pred CCceEEEEECCCCceEEEEE
Confidence 01357999999999999988
|
| >4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} | Back alignment and structure |
|---|
Probab=97.79 E-value=7.4e-06 Score=93.60 Aligned_cols=69 Identities=10% Similarity=0.073 Sum_probs=50.5
Q ss_pred ccEEEccCCCCCH--HHHHHHHHHHHHc--------C------CceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEe
Q psy18164 173 NEAVIIVPGYFNQ--IERQSMLKAGELA--------G------LKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYD 236 (1212)
Q Consensus 173 ~~~VitVPa~f~~--~qr~~l~~Aa~~A--------G------l~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D 236 (1212)
..+|++.|..+.. .+|+.+++....- | +..+.+++||.+|.+.+. .. .....++|+|
T Consensus 106 v~lv~gLP~~~~~~~~~k~~~~~~l~~~~~v~~~~~g~~~~i~I~~v~v~pe~~ga~~~~~----~~---~~~~~v~vvD 178 (329)
T 4apw_A 106 VQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDITIKAEGSGVLFLEQ----EN---FKNKNVAVID 178 (329)
T ss_dssp EEEEEEECGGGTTSSTTTTHHHHHHSSCEEECSSTTCCCEEEEEEEEEEEEHHHHHHHHSC----CC---CTTCEEEEEE
T ss_pred EEEEEcCCHHHhcchhHHHHHHHHhcCCceEEEEECCEEEEEEEeEEEEEeccHHHHhhcc----hh---hccCCEEEEE
Confidence 4689999988764 3677777776621 2 235678889988887542 11 1246899999
Q ss_pred cCCceEEEEEEE
Q psy18164 237 MGAWSTTVSIVS 248 (1212)
Q Consensus 237 ~GggT~Dvsvv~ 248 (1212)
+||||+|+++++
T Consensus 179 iGggTtd~~v~~ 190 (329)
T 4apw_A 179 FGGLNMGFSLYR 190 (329)
T ss_dssp ECSSCEEEEEEE
T ss_pred eCCCcEEEEEEE
Confidence 999999999998
|
| >4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00069 Score=83.89 Aligned_cols=79 Identities=13% Similarity=0.206 Sum_probs=62.0
Q ss_pred HHHHHHHH-HhcCCccc-----cEEEccCCCCCHHHHHHHHHHH-HHcCCceEEEecchhHHHHHhhhhcccCCCCCCCe
Q psy18164 158 HKAREYAS-VSAGQVIN-----EAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPV 230 (1212)
Q Consensus 158 ~~l~~~a~-~~~~~~~~-----~~VitVPa~f~~~qr~~l~~Aa-~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~ 230 (1212)
..|++++- ..++.... .+++|.|..|+...|+.|.+.+ +..|++.+.++.++.+|+++++. .
T Consensus 178 e~iw~~~~~~~L~i~~~d~~~~pvlltep~~~~~~~re~~~eilFE~f~~pa~~~~~~~vla~ya~G~-----------~ 246 (593)
T 4fo0_A 178 EVIWSHAIQKYLEIPLKDLKYYRCILLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGL-----------S 246 (593)
T ss_dssp HHHHHHHHHHTSCCCGGGGGGCEEEEEECSSCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHHTC-----------S
T ss_pred HHHHHHHHHHhcCCCchhccCCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEeechHHHHHHHCCC-----------C
Confidence 34444443 45664433 3999999999999999887776 67799999999999999988764 2
Q ss_pred EEEEEecCCceEEEEEE
Q psy18164 231 HVMFYDMGAWSTTVSIV 247 (1212)
Q Consensus 231 ~vlV~D~GggT~Dvsvv 247 (1212)
+-+|||+|++.++|+-|
T Consensus 247 tglVVDiG~~~T~v~PV 263 (593)
T 4fo0_A 247 STCIVDVGDQKTSVCCV 263 (593)
T ss_dssp EEEEEEECSSCEEEEEE
T ss_pred ceEEEEeCCCceeeeee
Confidence 56999999999987765
|
| >4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00061 Score=82.25 Aligned_cols=96 Identities=18% Similarity=0.306 Sum_probs=76.6
Q ss_pred ceEEEecCCCCCHHHHHHHHHHHH-HcCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEEEEe
Q psy18164 420 NEAVIIVPGYFNQIERQSMLKAGE-LAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQV 498 (1212)
Q Consensus 420 ~~~VItVP~~f~~~qR~al~~Aa~-~AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~ 498 (1212)
..++||.|+.++...|+.|.+.+- ..|+.-+.++.++.||++++|. ...-||+|+|+|+|+++.|.
T Consensus 222 ~pVLLTEPplnp~~~REkm~EIlFE~fgvpavyl~~qavlAlyasGl----------~ttGLVVDiG~g~T~VvPV~--- 288 (655)
T 4am6_A 222 YKVVLVIPDIFKKSHVETFIRVLLTELQFQAVAIIQESLATCYGAGI----------STSTCVVNIGAAETRIACVD--- 288 (655)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHSCC----------SSCEEEEEECSSCEEEEEEE---
T ss_pred CcEEEEeCCCCCHHHHHHHHHHHHhhcCCCeeeeccHHHHHHHhCCC----------CCceEEEcCCCceEEEEEEe---
Confidence 369999999999999999998884 5899999999999999988764 13469999999999999885
Q ss_pred eecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHH
Q psy18164 499 VKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKK 540 (1212)
Q Consensus 499 ~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~ 540 (1212)
.|..-.+.. ....+||+++|..|.++|..+
T Consensus 289 -----eG~vl~~ai-------~rL~iGG~dLT~yL~kLL~~r 318 (655)
T 4am6_A 289 -----EGTVLEHSA-------ITLDYGGDDITRLFALFLLQS 318 (655)
T ss_dssp -----TTEECGGGC-------EEESCCHHHHHHHHHHHHHHT
T ss_pred -----CCEEEhhhe-------eeecchHHHHHHHHHHHHHHc
Confidence 242111111 124799999999999998875
|
| >4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.014 Score=70.47 Aligned_cols=66 Identities=15% Similarity=0.337 Sum_probs=57.3
Q ss_pred ccEEEccCCCCCHHHHHHHHHHH-HHcCCceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEE
Q psy18164 173 NEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 173 ~~~VitVPa~f~~~qr~~l~~Aa-~~AGl~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~ 248 (1212)
..+++|.|..++...|+.|.+.+ +..|++.+.++.+|.||+++++. ...-||+|+|+|+++|+.|-
T Consensus 222 ~pVLLTEPplnp~~~REkm~EIlFE~fgvpavyl~~qavlAlyasGl----------~ttGLVVDiG~g~T~VvPV~ 288 (655)
T 4am6_A 222 YKVVLVIPDIFKKSHVETFIRVLLTELQFQAVAIIQESLATCYGAGI----------STSTCVVNIGAAETRIACVD 288 (655)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHSCC----------SSCEEEEEECSSCEEEEEEE
T ss_pred CcEEEEeCCCCCHHHHHHHHHHHHhhcCCCeeeeccHHHHHHHhCCC----------CCceEEEcCCCceEEEEEEe
Confidence 36999999999999999999988 56899999999999999987764 12469999999999999873
|
| >2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.047 Score=61.94 Aligned_cols=76 Identities=11% Similarity=0.099 Sum_probs=51.5
Q ss_pred EeHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcC-CcCCHHHHHHHHHHhC------CcccCCCCchhHH
Q psy18164 595 VTRAEFEA-LNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGA-GTRVPKVQEKITKVVG------VELSKNLNTDEAA 666 (1212)
Q Consensus 595 itR~efe~-l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGG-ssriP~Vq~~l~~~fg------~~i~~~~n~deaV 666 (1212)
++|+++-. ++.-+.+++..+..-+.+..+ ++.|+++|| .++.|.+++.|++.++ .++....++.-+-
T Consensus 276 ~~~eDIa~gll~sVa~~I~~lA~l~A~~~~-----i~~IvftGgfla~n~~~~~~L~~~l~~ws~g~~~~~~~~~~~y~G 350 (360)
T 2i7n_A 276 ISKEDLARATLVTITNNIGSIARMCALNEN-----IDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFG 350 (360)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----CCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCeEEEeCcccccCHHHHHHHHHHHhhhhcCCeeEEEcCCccHHH
Confidence 34544433 233344444444332223334 345999999 8999999999999973 5677778899999
Q ss_pred HhhHHHHHH
Q psy18164 667 ALGAVYKAA 675 (1212)
Q Consensus 667 A~GAa~~aa 675 (1212)
|+|||+.+.
T Consensus 351 AlGAaL~~~ 359 (360)
T 2i7n_A 351 AVGALLELF 359 (360)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999999863
|
| >2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14 | Back alignment and structure |
|---|
Probab=95.75 E-value=0.058 Score=59.53 Aligned_cols=75 Identities=13% Similarity=0.083 Sum_probs=55.5
Q ss_pred EeHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcC-CcCCHHHHHHHHHHh---CCcccCCCCchhHHHhh
Q psy18164 595 VTRAEFEA-LNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGA-GTRVPKVQEKITKVV---GVELSKNLNTDEAAALG 669 (1212)
Q Consensus 595 itR~efe~-l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGG-ssriP~Vq~~l~~~f---g~~i~~~~n~deaVA~G 669 (1212)
++++++-. ++.-+.+++..+...+.+..+ +..|+++|| .+..|.+++.|.+++ +.++..+.++..+.|+|
T Consensus 207 ~~~eDIaasl~~sV~~~I~~la~~~a~~~~-----i~~Vvf~Gg~l~~n~~l~~~l~~~~~~~~~~~~~p~~~~~~gAlG 281 (287)
T 2ews_A 207 FTPSNKLAAVIGVVGEVVTTMAITVAREFK-----TENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIG 281 (287)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----CCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGGHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCeEEEeCCchhcCHHHHHHHHHHHhhCCceEEECCCccHHHHHH
Confidence 45666543 444555555555554444444 446999999 899999999999985 47788889999999999
Q ss_pred HHHHH
Q psy18164 670 AVYKA 674 (1212)
Q Consensus 670 Aa~~a 674 (1212)
||+.|
T Consensus 282 AaL~~ 286 (287)
T 2ews_A 282 ALYLE 286 (287)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 99864
|
| >2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=5 Score=45.07 Aligned_cols=65 Identities=17% Similarity=0.187 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHh---CCcccCCC---CchhHHHhhHHHHHHh
Q psy18164 607 LFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVV---GVELSKNL---NTDEAAALGAVYKAAD 676 (1212)
Q Consensus 607 l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~f---g~~i~~~~---n~deaVA~GAa~~aa~ 676 (1212)
+.+.+...+.++.+..+ ++.|+|.||.+.-..+++.|.+.+ |.++..+. -.|.+++.|+|.+...
T Consensus 228 l~~~l~~~~~~~~~~~~-----~~~vvlsGGVa~N~~l~~~l~~~l~~~g~~v~~p~~~~~~D~G~~iG~a~~~~~ 298 (330)
T 2ivn_A 228 AFAALVEVTERAVAHTE-----KDEVVLVGGVAANNRLREMLRIMTEDRGIKFFVPPYDLCRDNGAMIAYTGLRMY 298 (330)
T ss_dssp HHHHHHHHHHHHHHHHC-----CSEEEEESGGGGCHHHHHHHHHHHHHHTCEEECCCHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC-----CCeEEEEccHHHHHHHHHHHHHHHHHcCCEEEecCCCCCChhHHHHHHHHHHHH
Confidence 44455555555555443 568999999999999999999877 44554444 3478899999876543
|
| >3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.047 Score=66.62 Aligned_cols=83 Identities=14% Similarity=0.214 Sum_probs=59.6
Q ss_pred EeHHHHHHHHHHHHHHHHHHHHH---HHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHH
Q psy18164 595 VTRAEFEALNEDLFDRVGYPVEQ---ALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAV 671 (1212)
Q Consensus 595 itR~efe~l~~~l~~~i~~~i~~---~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa 671 (1212)
-+|.+|-.++.-+++-+.--++. +|+..+. .++.|.++||++|.|.+.+++.++||.++... ...|+.|+|||
T Consensus 409 ~~~~~l~r~~rAvlEgia~~~r~~~e~l~~~g~---~~~~i~~~GG~aks~~~~Qi~ADv~g~pV~~~-~~~e~~alGAA 484 (554)
T 3l0q_A 409 TTPEDMALRYLATIQALALGTRHIIETMNQNGY---NIDTMMASGGGTKNPIFVQEHANATGCAMLLP-EESEAMLLGSA 484 (554)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC---CCCEEEEESGGGGCHHHHHHHHHHHCCEEEEE-SCSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CCCEEEEeCccccCHHHHHHHHHhhCCeEEec-CCCcchHHHHH
Confidence 47888744344444444333333 3444443 47889999999999999999999999877654 35689999999
Q ss_pred HHHHhhcCCc
Q psy18164 672 YKAADLSTGF 681 (1212)
Q Consensus 672 ~~aa~ls~~f 681 (1212)
+.|+.-.+.|
T Consensus 485 ~lA~~a~G~~ 494 (554)
T 3l0q_A 485 MMGTVAAGVF 494 (554)
T ss_dssp HHHHHHTTSS
T ss_pred HHHHHHcCCc
Confidence 9999766654
|
| >3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A* | Back alignment and structure |
|---|
Probab=94.53 E-value=0.061 Score=64.94 Aligned_cols=53 Identities=19% Similarity=0.090 Sum_probs=45.7
Q ss_pred ccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcCCc
Q psy18164 629 ISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGF 681 (1212)
Q Consensus 629 i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~~f 681 (1212)
++.|.++||++|.|.+.+++.+++|.++.....+.|+.|+|||+.|+.-.+.+
T Consensus 403 ~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~~~e~~alGaA~lA~~a~G~~ 455 (511)
T 3hz6_A 403 VGLLKVVGGGARSEAWLRMIADNLNVSLLVKPDAHLHPLRGLAALAAVELEWS 455 (511)
T ss_dssp CCEEEEESGGGGCHHHHHHHHHHHTCEEEECCCGGGHHHHHHHHHHHHHTTSC
T ss_pred CCEEEEeCchhcCHHHHHHHHHHHCCeeEEecCCCCchHHHHHHHHHHHhCCc
Confidence 78999999999999999999999998872334588999999999998766544
|
| >4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.063 Score=65.26 Aligned_cols=77 Identities=10% Similarity=0.119 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcC
Q psy18164 602 ALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLST 679 (1212)
Q Consensus 602 ~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~ 679 (1212)
.++.-+++.+.--++..++..+.....++.|.++||++|.|.+.+++.++||.++... ...|+.|+|||+.|+.-.+
T Consensus 408 ~l~RAvlEgia~~~r~~~~~l~~~g~~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~-~~~e~~alGaA~lA~~a~G 484 (538)
T 4bc3_A 408 VEVRALIEGQFMAKRIHAEGLGYRVMSKTKILATGGASHNREILQVLADVFDAPVYVI-DTANSACVGSAYRAFHGLA 484 (538)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCTTCCEEEEEGGGGCHHHHHHHHHHHTSCEEEC-CCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEcchhcCHHHHHHHHHHhCCceEec-CCCCchHHHHHHHHHHHhC
Confidence 3444455555544555555544444467889999999999999999999999877554 4578999999999986443
|
| >1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.21 Score=56.03 Aligned_cols=58 Identities=14% Similarity=0.066 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHcCCceEEEec-chhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEE
Q psy18164 186 IERQSMLKAGELAGLKVLQLMN-DYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 186 ~qr~~l~~Aa~~AGl~~~~li~-EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~ 248 (1212)
++...+.++-+..|+++ .+|+ |.+|...+.+...... .....+|+|+|||++.+++++
T Consensus 98 N~~~fl~~v~~~~G~~i-~vIsg~eEA~l~~~gv~~~l~----~~~~~lvvDIGGGStEl~~~~ 156 (315)
T 1t6c_A 98 NAEEFLERVKREVGLVV-EVITPEQEGRYAYLAVAYSLK----PEGEVCVVDQGGGSTEYVFGK 156 (315)
T ss_dssp THHHHHHHHHHHTCCCE-EECCHHHHHHHHHHHHHHHTC----CCSEEEEEEEETTEEEEEEEE
T ss_pred CHHHHHHHHHHHHCCCE-EEcCHHHHHHHHHHHHHhhcc----cCCCEEEEEeCCCcEEEEEEe
Confidence 34556666666789976 5666 5555544444333221 134699999999999999974
|
| >3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.069 Score=64.37 Aligned_cols=81 Identities=11% Similarity=0.075 Sum_probs=56.5
Q ss_pred eHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHH
Q psy18164 596 TRAEFEA-LNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKA 674 (1212)
Q Consensus 596 tR~efe~-l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~a 674 (1212)
+|.+|-. +++-+.-.+...+ +.|+..+. .++.|.++||++|.|.+.+++.+++|.++... ...|+.|+|||+.|
T Consensus 364 ~~~~l~RAvlEgia~~~r~~~-~~l~~~g~---~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~-~~~e~~alGaA~lA 438 (504)
T 3ll3_A 364 QKPEMARAVIEGIIFNLYDAA-SNLIKNTK---KPVAINATGGFLKSDFVRQLCANIFNVPIVTM-KEQQSGTLAAMFLA 438 (504)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-HHHHTTSC---CCSEEEEESGGGCSHHHHHHHHHHHTSCEEEE-SCSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HHHHHcCC---CCCEEEEeCchhcCHHHHHHHHHhhCCeEEec-CCCCchhHHHHHHH
Confidence 5655533 2233333333333 33444442 57899999999999999999999999877653 45679999999999
Q ss_pred HhhcCCc
Q psy18164 675 ADLSTGF 681 (1212)
Q Consensus 675 a~ls~~f 681 (1212)
+.-.+.+
T Consensus 439 ~~a~G~~ 445 (504)
T 3ll3_A 439 RQALGLN 445 (504)
T ss_dssp HHHTTSC
T ss_pred HHHcCcc
Confidence 8766543
|
| >2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A | Back alignment and structure |
|---|
Probab=94.15 E-value=0.057 Score=63.43 Aligned_cols=56 Identities=18% Similarity=0.169 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHc-CC--ceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEE
Q psy18164 185 QIERQSMLKAGELA-GL--KVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 185 ~~qr~~l~~Aa~~A-Gl--~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~ 248 (1212)
..+-+.+.+|.+.+ |+ .+-. -||.||+++.......+ --++++||||||+|+|++.
T Consensus 367 ~~~m~NI~~cVer~~gL~veV~g--~ep~AAglaaLTeDE~e------LGvaiIDmGGGTTd~sVf~ 425 (610)
T 2d0o_A 367 RLQMAMIAREIEQKLNIDVQIGG--AEAEAAILGALTTPGTT------RPLAILDLGAGSTDASIIN 425 (610)
T ss_dssp CCCHHHHHHHHHHHHCCEEEEEE--EHHHHHHHHHTTSTTCC------SSEEEEEECSSEEEEEEEC
T ss_pred HHHHHHHHHHHHhccCCcceecc--ccHHHhhhhhcCCCCCc------CCeEEEEeCCCcceEEEEc
Confidence 44567899999999 99 6655 89999999887655443 3589999999999999975
|
| >2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=94.09 E-value=0.081 Score=63.63 Aligned_cols=81 Identities=15% Similarity=0.220 Sum_probs=55.7
Q ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHH
Q psy18164 596 TRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAA 675 (1212)
Q Consensus 596 tR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa 675 (1212)
+|.++ +.-+++.+.--++..++...-.. .++.|.++||+++.+.+.+++.+++|.++...- ..|+.|+|||+.|+
T Consensus 365 ~~~~l---~rAvlEgia~~~~~~l~~l~~~~-~~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~~-~~e~~alGaA~lA~ 439 (497)
T 2zf5_O 365 GREHL---ARATLEAIAYLTRDVVDEMEKLV-QIKELRVDGGATANDFLMQFQADILNRKVIRPV-VKETTALGAAYLAG 439 (497)
T ss_dssp CHHHH---HHHHHHHHHHHHHHHHHHHTTTS-CCCCEEEESGGGGCHHHHHHHHHHHTSCEEEES-CSCHHHHHHHHHHH
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHhcC-CcceEEEeCccccCHHHHHHHHhhcCCeEEEcC-CCcchHHHHHHHHH
Confidence 45544 33344444444444444332222 578899999999999999999999998776543 45699999999998
Q ss_pred hhcCCc
Q psy18164 676 DLSTGF 681 (1212)
Q Consensus 676 ~ls~~f 681 (1212)
.-.+.|
T Consensus 440 ~~~g~~ 445 (497)
T 2zf5_O 440 LAVDYW 445 (497)
T ss_dssp HHTTSS
T ss_pred HHhCcc
Confidence 765543
|
| >2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A | Back alignment and structure |
|---|
Probab=94.07 E-value=0.063 Score=64.41 Aligned_cols=82 Identities=18% Similarity=0.207 Sum_probs=56.0
Q ss_pred eHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHH
Q psy18164 596 TRAEFEA-LNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKA 674 (1212)
Q Consensus 596 tR~efe~-l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~a 674 (1212)
+|.++-. +++-+.-.+...++ .|+..+. .++.|.++||+++.+.+.+++.+++|.++......+.+.|+|||+.|
T Consensus 357 ~~~~~~rAvlEgia~~~~~~~~-~l~~~g~---~~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~~~~e~~~alGAA~lA 432 (484)
T 2itm_A 357 GPNELARAVLEGVGYALADGMD-VVHACGI---KPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARLA 432 (484)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH-HHHTTTC---CCSCEEEESGGGCCHHHHHHHHHHHCCCEEEESCTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHcCC---CcceEEEEeccccCHHHHHHHHHHhCCeEEeCCCCCcccHHHHHHHH
Confidence 4555432 33333333333333 3343343 46789999999999999999999999887765555545899999999
Q ss_pred HhhcCCc
Q psy18164 675 ADLSTGF 681 (1212)
Q Consensus 675 a~ls~~f 681 (1212)
+.-.+.+
T Consensus 433 ~~~~g~~ 439 (484)
T 2itm_A 433 QIAANPE 439 (484)
T ss_dssp HHHHCTT
T ss_pred HHHcCCc
Confidence 8765543
|
| >3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.91 E-value=3.1 Score=46.17 Aligned_cols=47 Identities=23% Similarity=0.164 Sum_probs=31.0
Q ss_pred ccEEEEEcCCc-CC-HHHHHHHHHHhC--------CcccCCCCchhHHHhhHHHHHH
Q psy18164 629 ISQVILVGAGT-RV-PKVQEKITKVVG--------VELSKNLNTDEAAALGAVYKAA 675 (1212)
Q Consensus 629 i~~ViLvGGss-ri-P~Vq~~l~~~fg--------~~i~~~~n~deaVA~GAa~~aa 675 (1212)
.+.|+|-||.+ +. |.+.+.|++.+. ..+....-.+.+.++|||+.+.
T Consensus 238 p~~ivlgG~i~~~~~~~l~~~l~~~l~~~~~~~~~~~i~~s~lg~~a~~~GAa~l~~ 294 (302)
T 3vov_A 238 PGVVVLGGGVALNAPEGYWEALLEAYRRYLQGWEAPPLRRARLGAEAGLLGAALTAY 294 (302)
T ss_dssp CSEEEEESHHHHTSCHHHHHHHHHHHHHTTTTSCCCCEEECSSGGGHHHHHHHHHHH
T ss_pred CCEEEEeChhHhhhhHHHHHHHHHHHHHhcchhcCCcEEEcCCCCcHHHHHHHHHHH
Confidence 56788888877 54 555555554442 1244445567899999998875
|
| >2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A* | Back alignment and structure |
|---|
Probab=93.88 E-value=2.8 Score=46.33 Aligned_cols=48 Identities=21% Similarity=0.167 Sum_probs=36.2
Q ss_pred CccEEEEEcCCcCCHHHHHHHHHHhC-CcccCCCCchhHHHhhHHHHHHh
Q psy18164 628 VISQVILVGAGTRVPKVQEKITKVVG-VELSKNLNTDEAAALGAVYKAAD 676 (1212)
Q Consensus 628 ~i~~ViLvGGssriP~Vq~~l~~~fg-~~i~~~~n~deaVA~GAa~~aa~ 676 (1212)
+.+.|+|.||.++.+.+.+.|++.+. .++.... .+.+.+.||++.+..
T Consensus 239 ~p~~IvlgGgv~~~~~~~~~l~~~~~~~~i~~~~-~~~~~~~GAa~la~~ 287 (299)
T 2e2o_A 239 GTNKVYLKGGMFRSNIYHKFFTLYLEKEGIISDL-GKRSPEIGAVILAYK 287 (299)
T ss_dssp TCSEEEEESGGGGSHHHHHHHHHHHHHTTCEEEC-CSCCHHHHHHHHHHH
T ss_pred CCCEEEEECCccCcHHHHHHHHHHCCCCeEeccC-CCCChHHHHHHHHHH
Confidence 35679999988877888888888776 3455444 667899999988754
|
| >3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A* | Back alignment and structure |
|---|
Probab=93.84 E-value=2.8 Score=46.91 Aligned_cols=45 Identities=22% Similarity=0.175 Sum_probs=30.0
Q ss_pred cCCCeeeeechhHHHHHhhcccccccCCCCCCeEEEEEEcCCCceeEEEEE
Q psy18164 445 AGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 495 (1212)
Q Consensus 445 AGl~~~~li~EptAaAl~y~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~ 495 (1212)
.|++ +.+.|+..|+|++-....... . ..+++++-+|.| .-.+++.
T Consensus 96 ~~~p-v~v~NDa~aaal~E~~~g~~~---~-~~~~~~l~~GtG-iG~gii~ 140 (321)
T 3vgl_A 96 VGLP-VVVENDANAAAWGEYRFGAGQ---G-HDDVICITLGTG-LGGGIII 140 (321)
T ss_dssp HCSC-EEEEEHHHHHHHHHHHHSTTT---T-CSSEEEEEESSS-EEEEEEE
T ss_pred hCCC-EEEEehhhhHHHHHHHhCCCC---C-CCCEEEEEeCcc-eEEEEEE
Confidence 3776 589999999998754432211 1 466888888887 5555553
|
| >3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} | Back alignment and structure |
|---|
Probab=93.78 E-value=0.064 Score=64.76 Aligned_cols=80 Identities=25% Similarity=0.435 Sum_probs=56.2
Q ss_pred eHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHH
Q psy18164 596 TRAEFEA-LNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKA 674 (1212)
Q Consensus 596 tR~efe~-l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~a 674 (1212)
+|.++-. +++-+.-.+...++ .|++.+. .++.|.++||++|.|.+.+++.+++|.++... ...|+.|+|||+.|
T Consensus 395 ~~~~l~RAvlEgia~~~r~~l~-~l~~~g~---~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~-~~~e~~alGAA~lA 469 (515)
T 3i8b_A 395 TRENLARAFVEGLLCSQRDCLE-LIRSLGA---SITRILLIGGGAKSEAIRTLAPSILGMDVTRP-ATDEYVAIGAARQA 469 (515)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH-HHHHTTC---CCCEEEEESGGGGCHHHHHHHHHHHTSCEEEE-CCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHcCC---CCCEEEEECchhcCHHHHHHHHHHhCCceEec-CCcccHHHHHHHHH
Confidence 5665533 33333334444443 3444554 46789999999999999999999999777553 45679999999999
Q ss_pred HhhcCC
Q psy18164 675 ADLSTG 680 (1212)
Q Consensus 675 a~ls~~ 680 (1212)
+.-.+.
T Consensus 470 ~~a~G~ 475 (515)
T 3i8b_A 470 AWVLSG 475 (515)
T ss_dssp HHHHHC
T ss_pred HHHcCC
Confidence 865543
|
| >4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=93.77 E-value=5 Score=44.99 Aligned_cols=46 Identities=22% Similarity=0.218 Sum_probs=32.7
Q ss_pred ccEEEEEcCCcCCHHHHHHHHHHhCC---------cccCCCCchhHHHhhHHHHH
Q psy18164 629 ISQVILVGAGTRVPKVQEKITKVVGV---------ELSKNLNTDEAAALGAVYKA 674 (1212)
Q Consensus 629 i~~ViLvGGssriP~Vq~~l~~~fg~---------~i~~~~n~deaVA~GAa~~a 674 (1212)
.+.|+|-||.+..+.+.+.|++.+.. ++....-.+.+.++|||+.+
T Consensus 270 p~~IvlgGgi~~~~~l~~~l~~~l~~~~~~~~~~~~i~~s~lg~~a~~~GAa~l~ 324 (327)
T 4db3_A 270 PHVVALGGGLSNFELIYEEMPKRVPKYLLSVAKCPKIIKAKHGDSGGVRGAAFLN 324 (327)
T ss_dssp CSEEEEESGGGGCTHHHHHHHHHGGGGSCTTCCCCEEEECSCGGGHHHHHHHHTT
T ss_pred CCEEEEeCcccchHHHHHHHHHHHHHHhccccCCCEEEECCCCCcHHHHHHHHHH
Confidence 56888988888887777777766642 22333445789999999765
|
| >3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y* | Back alignment and structure |
|---|
Probab=93.66 E-value=0.11 Score=62.85 Aligned_cols=82 Identities=15% Similarity=0.146 Sum_probs=57.8
Q ss_pred eHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHH
Q psy18164 596 TRAEFEA-LNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKA 674 (1212)
Q Consensus 596 tR~efe~-l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~a 674 (1212)
+|.++-. +++-+.-.+...++..-+.+|.. ++.|.++||+++.|.+.+++.++||.++... ...|+.|+|||+.|
T Consensus 372 ~~~~i~RAvlEgia~~~r~~le~l~~~~g~~---~~~i~v~GGgaks~~~~Qi~ADvlg~pV~~~-~~~E~~alGAA~lA 447 (526)
T 3ezw_A 372 NANHIIRATLESIAYQTRDVLEAMQADSGIR---LHALRVDGGAVANNFLMQFQSDILGTRVERP-EVREVTALGAAYLA 447 (526)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CSEEEEESGGGGCHHHHHHHHHHHTSEEEEE-SCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CCEEEEECchhhCHHHHHHHHHHHCCEEEeC-CCCchHHHHHHHHH
Confidence 4555533 23333334444444433445644 6789999999999999999999999877654 34679999999999
Q ss_pred HhhcCCc
Q psy18164 675 ADLSTGF 681 (1212)
Q Consensus 675 a~ls~~f 681 (1212)
+.-.+.|
T Consensus 448 ~~a~G~~ 454 (526)
T 3ezw_A 448 GLAVGFW 454 (526)
T ss_dssp HHHTTSS
T ss_pred HHHhCCC
Confidence 9777654
|
| >1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 | Back alignment and structure |
|---|
Probab=93.24 E-value=0.075 Score=62.66 Aligned_cols=54 Identities=17% Similarity=0.027 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHc-CC--ceEEEecchhHHHHHhhhhcccCCCCCCCeEEEEEecCCceEEEEEEE
Q psy18164 187 ERQSMLKAGELA-GL--KVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 187 qr~~l~~Aa~~A-Gl--~~~~li~EP~AAal~y~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~ 248 (1212)
+-+.+.+|.+.+ |+ .+-. -||.||+++.......+ --++++||||||+|+|++.
T Consensus 371 ~m~NI~~~Ver~~gL~veV~g--~ep~AA~laaLTedE~e------lGvaiIDmGgGTTd~sVf~ 427 (607)
T 1nbw_A 371 QMQVIARELSARLQTEVVVGG--VEANMAIAGALTTPGCA------APLAILDLGAGSTDAAIVN 427 (607)
T ss_dssp CSCCHHHHHHHHHTSEEEECS--CHHHHHHHHHTTSTTCC------SSEEEEEECSSEEEEEEEC
T ss_pred HHHHHHHHHHhccCCcceecc--ccHHHhhhhhcCCCCCc------CCeEEEEeCCCcceEEEEc
Confidence 345688899999 99 5544 89999999887655443 3589999999999999975
|
| >3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A* | Back alignment and structure |
|---|
Probab=93.22 E-value=0.099 Score=62.95 Aligned_cols=82 Identities=17% Similarity=0.191 Sum_probs=57.8
Q ss_pred eHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHH
Q psy18164 596 TRAEFEA-LNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKA 674 (1212)
Q Consensus 596 tR~efe~-l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~a 674 (1212)
+|.+|-. +++-+.-.+...++..-+..+. .++.|.++||++|.+.+.+++.+++|.++... ...|+.|+|||+.|
T Consensus 374 ~~~~l~RAvlEgia~~~~~~~~~l~~~~g~---~~~~i~~~GG~aks~~~~Qi~Adv~g~pV~~~-~~~e~~alGaA~la 449 (501)
T 3g25_A 374 EKEHFIRATLESLCYQTRDVMEAMSKDSGI---DVQSLRVDGGAVKNNFIMQFQADIVNTSVERP-EIQETTALGAAFLA 449 (501)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHSSC---CCSEEEEESGGGGCHHHHHHHHHHHTSEEEEE-SCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEecchhcCHHHHHHHHHHhCCceEec-CCCcchHHHHHHHH
Confidence 4655543 3333444444444433333454 37789999999999999999999999877543 46689999999999
Q ss_pred HhhcCCc
Q psy18164 675 ADLSTGF 681 (1212)
Q Consensus 675 a~ls~~f 681 (1212)
+.-.+.|
T Consensus 450 ~~a~G~~ 456 (501)
T 3g25_A 450 GLAVGFW 456 (501)
T ss_dssp HHHTTSS
T ss_pred HHHhCcc
Confidence 9766654
|
| >3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O | Back alignment and structure |
|---|
Probab=93.05 E-value=0.1 Score=62.93 Aligned_cols=82 Identities=16% Similarity=0.196 Sum_probs=57.4
Q ss_pred eHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHH
Q psy18164 596 TRAEFEA-LNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKA 674 (1212)
Q Consensus 596 tR~efe~-l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~a 674 (1212)
+|.+|-. +++-+.-.+...++..-+..+. .++.|.++||++|.+.+.+++.+++|.++... ...|+.|+|||+.|
T Consensus 373 ~~~~l~RAvlEgia~~~r~~~~~l~~~~g~---~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~-~~~e~~alGaA~lA 448 (506)
T 3h3n_X 373 TKEDFVRATLQAVAYQSKDVIDTMKKDSGI---DIPLLKVDGGAAKNDLLMQFQADILDIDVQRA-ANLETTALGAAYLA 448 (506)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCS---CCCEEEEESGGGGCHHHHHHHHHHHTSEEEEC-SSSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCEEEEecccccCHHHHHHHHHHhCCeEEec-CCCcchhHHHHHHH
Confidence 5665543 3333434444444433222454 46789999999999999999999999877553 46679999999999
Q ss_pred HhhcCCc
Q psy18164 675 ADLSTGF 681 (1212)
Q Consensus 675 a~ls~~f 681 (1212)
+.-.+.|
T Consensus 449 ~~a~G~~ 455 (506)
T 3h3n_X 449 GLAVGFW 455 (506)
T ss_dssp HHHTTSS
T ss_pred HHHhCcc
Confidence 8766654
|
| >4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.98 E-value=0.075 Score=64.25 Aligned_cols=53 Identities=11% Similarity=0.130 Sum_probs=44.2
Q ss_pred CccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcCCc
Q psy18164 628 VISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGF 681 (1212)
Q Consensus 628 ~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~~f 681 (1212)
.++.|.++||++|.|.+.+++.+++|.++... ...|+.|+|||+.|+.-.+.|
T Consensus 425 ~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~-~~~e~~alGAA~lA~~a~G~~ 477 (520)
T 4e1j_A 425 NDTVLRVDGGMVASDWTMQRLSDLLDAPVDRP-VILETTALGVAWLAGSRAGVW 477 (520)
T ss_dssp --CCEEEESGGGGCHHHHHHHHHHHTSCEEEE-SCCCHHHHHHHHHHHHHHTSS
T ss_pred CcceEEEeCccccCHHHHHHHHHHhCCeEEec-CCCccHHHHHHHHHHHHcCCc
Confidence 47789999999999999999999999877653 456799999999999776654
|
| >3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum} | Back alignment and structure |
|---|
Probab=92.79 E-value=0.1 Score=63.01 Aligned_cols=81 Identities=20% Similarity=0.076 Sum_probs=56.6
Q ss_pred eHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHH
Q psy18164 596 TRAEFEA-LNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKA 674 (1212)
Q Consensus 596 tR~efe~-l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~a 674 (1212)
+|.+|-. +++-+.-.+...++ .|+..+. .++.|.++||++|.|.+.+++.+++|.++....+ .|+.|+|||+.|
T Consensus 371 ~~~~l~rAvlEgia~~~~~~~~-~l~~~g~---~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~-~e~~alGaA~lA 445 (508)
T 3ifr_A 371 TRGHLWRALLEAVALAFRHHVA-VLDDIGH---APQRFFASDGGTRSRVWMGIMADVLQRPVQLLAN-PLGSAVGAAWVA 445 (508)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH-HHHHHTC---CCCEEEEESGGGGCHHHHHHHHHHHTSCEEEEEC-CSTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHhcCC---CCCEEEEeCCcccCHHHHHHHHHHhCCeEEecCC-CCchHHHHHHHH
Confidence 5665533 33333334444443 3444454 3788999999999999999999999987765543 568999999999
Q ss_pred HhhcCCc
Q psy18164 675 ADLSTGF 681 (1212)
Q Consensus 675 a~ls~~f 681 (1212)
+.-.+.|
T Consensus 446 ~~a~G~~ 452 (508)
T 3ifr_A 446 AIGGGDD 452 (508)
T ss_dssp HHHTCSS
T ss_pred HHHhCCC
Confidence 8766544
|
| >4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=92.74 E-value=4.2 Score=44.93 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=36.5
Q ss_pred CccEEEEEcCCcCCHHHHHHHHHHhCC------cccCCCCchhHHHhhHHHHHHh
Q psy18164 628 VISQVILVGAGTRVPKVQEKITKVVGV------ELSKNLNTDEAAALGAVYKAAD 676 (1212)
Q Consensus 628 ~i~~ViLvGGssriP~Vq~~l~~~fg~------~i~~~~n~deaVA~GAa~~aa~ 676 (1212)
+.+.|+|-||.++.|.+.+.|++.+.. ++......+.+.++|||+.+..
T Consensus 237 ~p~~IvlgGgi~~~~~~~~~l~~~l~~~~~~~~~i~~s~lg~~a~~~GAa~l~~~ 291 (297)
T 4htl_A 237 DPTHIFIGGGITSRPTFIAELKHHMESFGLRDTIIETATHKNQAGLLGAVYHFLQ 291 (297)
T ss_dssp CCSEEEEESGGGGSTTHHHHHHHHHTTTCCTTCEEEECSCTTTHHHHHHHHHHHH
T ss_pred CCCEEEEeCcccccHHHHHHHHHHHHHhccCCCeEEECCcCChHHHHhHHHHHHH
Confidence 356899999999888777888877752 3334455678999999988764
|
| >2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.48 E-value=0.19 Score=60.42 Aligned_cols=81 Identities=20% Similarity=0.134 Sum_probs=56.0
Q ss_pred eHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHH
Q psy18164 596 TRAEFE-ALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKA 674 (1212)
Q Consensus 596 tR~efe-~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~a 674 (1212)
+|.++- .+++-+.-++...++..-+..+. .++.|.++||++|.+.+.+++.+++|.++... ...|+.|+|||+.|
T Consensus 368 ~~~~~~rAvlEgia~~~~~~~~~l~~~~g~---~~~~i~~~GG~a~n~~~~q~~Adv~g~pV~~~-~~~e~~alGaA~la 443 (495)
T 2dpn_A 368 SRAHLARAALEGVAFQVRDVVLAMEEEAGV---RLKVLKADGGMAQNRLFLKIQADLLGVPVAVP-EVTETTALGAALMA 443 (495)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTTSC---CCCCEEEESGGGGCHHHHHHHHHHHTSCEEEE-SCSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEecccccCHHHHHHHHHHhCCeeEec-CCcccHHHHHHHHH
Confidence 465543 34444444444444433222343 35779999999999999999999999877643 45569999999999
Q ss_pred HhhcCC
Q psy18164 675 ADLSTG 680 (1212)
Q Consensus 675 a~ls~~ 680 (1212)
+.-.+.
T Consensus 444 ~~a~G~ 449 (495)
T 2dpn_A 444 GVGAGA 449 (495)
T ss_dssp HHHHTS
T ss_pred HhhcCc
Confidence 865543
|
| >3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=92.35 E-value=0.95 Score=50.82 Aligned_cols=47 Identities=17% Similarity=0.189 Sum_probs=32.8
Q ss_pred ccEEEEEcCCcCC-HHHHHHHHHHhC----------CcccCCCCchhHHHhhHHHHHH
Q psy18164 629 ISQVILVGAGTRV-PKVQEKITKVVG----------VELSKNLNTDEAAALGAVYKAA 675 (1212)
Q Consensus 629 i~~ViLvGGssri-P~Vq~~l~~~fg----------~~i~~~~n~deaVA~GAa~~aa 675 (1212)
.+.|+|-||.++. +.+.+.|++.+. .++......+.+.++|||+.+.
T Consensus 261 P~~IvlgG~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~i~~s~l~~~a~~~GAa~l~~ 318 (321)
T 3r8e_A 261 LNNILLGGGISGAFDYFVPNLKKAMLEHLPTYYTDDMYIGKATLENDAGLLGAAGLIM 318 (321)
T ss_dssp CCEEEEESGGGGGHHHHHHHHHHHHHHHSCHHHHTTCEEEECSSGGGHHHHHHHHHHH
T ss_pred CCEEEEeChhcccchHHHHHHHHHHHHhcccccCCCCEEEEcCCCCcHHHHHHHHHHH
Confidence 5788999998886 555555554432 2445556677899999998874
|
| >2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP} | Back alignment and structure |
|---|
Probab=91.87 E-value=0.29 Score=58.91 Aligned_cols=82 Identities=18% Similarity=0.149 Sum_probs=57.8
Q ss_pred eHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHH
Q psy18164 596 TRAEFEA-LNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKA 674 (1212)
Q Consensus 596 tR~efe~-l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~a 674 (1212)
+|.++-. +++-+.-.+...++..-+..+. .++.|.++||++|.+.+.+++.+++|.++... ...|+.|+|||+.|
T Consensus 373 ~~~~l~rAvlEgia~~~~~~~~~l~~~~g~---~~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~-~~~e~~alGaA~lA 448 (504)
T 2d4w_A 373 NRNHIARAALEATAFQSREVVDAMNADSGV---DLTELRVDGGMVANELLMQFQADQLGVDVVRP-KVAETTALGAAYAA 448 (504)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHSC---CCCEEEEESGGGGCHHHHHHHHHHHTSCEEEE-SCSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CcceEEEeCCcccCHHHHHHHHHHhCCeEEeC-CCCcchHHHHHHHH
Confidence 5655543 3444444455555443333453 36789999999999999999999999877643 44679999999999
Q ss_pred HhhcCCc
Q psy18164 675 ADLSTGF 681 (1212)
Q Consensus 675 a~ls~~f 681 (1212)
+.-.+.|
T Consensus 449 ~~~~G~~ 455 (504)
T 2d4w_A 449 GIAVGFW 455 (504)
T ss_dssp HHHHTSS
T ss_pred HhhcCcc
Confidence 8766543
|
| >3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705} | Back alignment and structure |
|---|
Probab=91.80 E-value=0.9 Score=51.51 Aligned_cols=60 Identities=13% Similarity=0.167 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHcCCceEEEecchhHHHHHhh-hhcccCCCCCCCeEEEEEecCCceEEEEEEE
Q psy18164 187 ERQSMLKAGELAGLKVLQLMNDYTAVALNYG-IFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 187 qr~~l~~Aa~~AGl~~~~li~EP~AAal~y~-~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~ 248 (1212)
...++.++-+..|++. .+|+-.+=|.+.|. ....... ......++|+|+|||+++++++.
T Consensus 104 ~~~fl~~v~~~tGi~i-eVIsG~eEA~l~~~gv~~~~~~-~~~~~~~lviDIGGGStel~~~~ 164 (343)
T 3cer_A 104 REEFEDEIERILGVRP-EVIPGTEEADLSFLGATSVVNR-DDLPAPYLVVDLGGGSTELVIGG 164 (343)
T ss_dssp HHHHHHHHHHHHSSCC-EECCHHHHHHHHHHHHHSSCCT-TTCCSSEEEEEECSSCEEEEECC
T ss_pred HHHHHHHHHHHHCCCE-EEeCHHHHHHHHHHHHHhhCcc-ccccCCEEEEEeCCCceEEEEee
Confidence 3456666667779975 78887666666553 3222111 01124699999999999999864
|
| >2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A* | Back alignment and structure |
|---|
Probab=91.22 E-value=0.38 Score=57.85 Aligned_cols=82 Identities=13% Similarity=0.111 Sum_probs=56.7
Q ss_pred eHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCCCCc-cEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHH
Q psy18164 596 TRAEFEA-LNEDLFDRVGYPVEQALKSSAVPMDVI-SQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYK 673 (1212)
Q Consensus 596 tR~efe~-l~~~l~~~i~~~i~~~L~~a~~~~~~i-~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~ 673 (1212)
+|.++-. +++-+.-.+...++..-+..+.. + +.|.++||++|.|.+.+++.+++|.++... ...|+.|+|||+.
T Consensus 376 ~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~---~~~~i~~~GG~a~s~~~~Q~~Adv~g~pV~~~-~~~e~~alGaA~l 451 (503)
T 2w40_A 376 ERSHIVRALLEGIAFQLNEIVDSLTSDMGIE---MLHVLRCDGGMTKNKPFMQFNSDIINTKIEVS-KYKEVTSLGAAVL 451 (503)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS---CCSCEEEESGGGGCHHHHHHHHHHHTSCEEEE-SCSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---ccceEEEeCccccCHHHHHHHHHHHCCeEEec-CCCcchHHHHHHH
Confidence 4555543 34444444444444332324533 5 679999999999999999999999877643 4556999999999
Q ss_pred HHhhcCCc
Q psy18164 674 AADLSTGF 681 (1212)
Q Consensus 674 aa~ls~~f 681 (1212)
|+.-.+.|
T Consensus 452 a~~~~G~~ 459 (503)
T 2w40_A 452 AGLEVKIW 459 (503)
T ss_dssp HHHHTTCS
T ss_pred HHHHhCcc
Confidence 98765543
|
| >2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A* | Back alignment and structure |
|---|
Probab=91.07 E-value=0.22 Score=59.69 Aligned_cols=78 Identities=17% Similarity=0.147 Sum_probs=52.2
Q ss_pred EEeHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHH
Q psy18164 594 LVTRAEFEA-LNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVY 672 (1212)
Q Consensus 594 ~itR~efe~-l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~ 672 (1212)
.-+|.+|-. +++-+.-.+...++..-+..+. .++.|.++||++|.+.+.+++.+++|.++.... .|+.|+|||+
T Consensus 361 ~~t~~~l~RAvlEgia~~~r~~~~~l~~~~g~---~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~~--~e~~alGaa~ 435 (489)
T 2uyt_A 361 PESDAELARCIFDSLALLYADVLHELAQLRGE---DFSQLHIVGGGCQNTLLNQLCADACGIRVIAGP--VEASTLGNIG 435 (489)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---CCSEEEEESGGGGCHHHHHHHHHHHTSEEEECC--TTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCCEEEEeCChhhhHHHHHHHHHHHCCeeecCC--ccHhHHHHHH
Confidence 345665543 3333444444444333222443 367899999999999999999999998776443 5899999965
Q ss_pred HHHh
Q psy18164 673 KAAD 676 (1212)
Q Consensus 673 ~aa~ 676 (1212)
.|+.
T Consensus 436 ~A~~ 439 (489)
T 2uyt_A 436 IQLM 439 (489)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
|
| >1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A* | Back alignment and structure |
|---|
Probab=90.37 E-value=0.7 Score=51.76 Aligned_cols=76 Identities=14% Similarity=0.094 Sum_probs=47.4
Q ss_pred HHHHHHHHHcCCCeeeeechhHHHHHhh-cccccccCCCCCCeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEE
Q psy18164 436 QSMLKAGELAGLKVLQLMNDYTAVALNY-GIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVS 514 (1212)
Q Consensus 436 ~al~~Aa~~AGl~~~~li~EptAaAl~y-~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~ 514 (1212)
..+..+-+..|+++ .+|+...=|.+.| |...... . ....+|+|+|||||.+++++ .| .+
T Consensus 101 ~fl~~v~~~~G~~i-~vIsg~eEA~l~~~gv~~~l~---~-~~~~lvvDIGGGStEl~~~~--------~~------~~- 160 (315)
T 1t6c_A 101 EFLERVKREVGLVV-EVITPEQEGRYAYLAVAYSLK---P-EGEVCVVDQGGGSTEYVFGK--------GY------KV- 160 (315)
T ss_dssp HHHHHHHHHTCCCE-EECCHHHHHHHHHHHHHHHTC---C-CSEEEEEEEETTEEEEEEEE--------TT------EE-
T ss_pred HHHHHHHHHHCCCE-EEcCHHHHHHHHHHHHHhhcc---c-CCCEEEEEeCCCcEEEEEEe--------CC------ce-
Confidence 44555555789997 5665554444444 4433221 1 46799999999999999975 12 22
Q ss_pred EEEEecCCCCChHHHHHHH
Q psy18164 515 VLGVGYDRTLGGLEMQIRL 533 (1212)
Q Consensus 515 vl~~~~d~~lGG~~~D~~l 533 (1212)
....+..+|+..+.+.+
T Consensus 161 --~~~~Sl~~G~v~l~e~~ 177 (315)
T 1t6c_A 161 --REVISLPIGIVNLTETF 177 (315)
T ss_dssp --EEEEEECCCHHHHHHHH
T ss_pred --eeEEEEeccHHHHHHHh
Confidence 12334679998886654
|
| >3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A | Back alignment and structure |
|---|
Probab=89.52 E-value=1.2 Score=41.76 Aligned_cols=78 Identities=14% Similarity=0.052 Sum_probs=56.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhccccCcCCcccCCCCCHhhhhhhccccchhhhccccccccccccchhhHHHHHHH
Q psy18164 1014 QERPEALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLSMVWFRVCWGFFFLLFKQDKGLDTLINET 1093 (1212)
Q Consensus 1014 ~~rp~a~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 1093 (1212)
+.+-++-.+|..++..+++.|.. +. ....+++++++.+ ...|+++
T Consensus 5 re~ieakN~lEs~iy~~e~~l~e-----~~-----~~~kl~~eek~~i-------------------------~~~i~e~ 49 (113)
T 3lof_A 5 AERVSAKNALESYAFNMKSAVED-----EG-----LKGKISEADKKKV-------------------------LDKCQEV 49 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC-----GG-----GBTTBCHHHHHHH-------------------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc-----hh-----hhccCCHHHHHHH-------------------------HHHHHHH
Confidence 34445556666666666654432 01 1268999999999 9999999
Q ss_pred HHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHHHHHHHHHhcc
Q psy18164 1094 KVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKS 1138 (1212)
Q Consensus 1094 ~~W~~~~~~~q~~l~~~~dp~~~~~~i~~k~~~l~~~~~~~~~k~ 1138 (1212)
..||+.. .+ ....+|+.|++.|+..+.+|+.++
T Consensus 50 ~~wL~~~----------~~--a~~e~i~~k~~eL~~~~~~i~~k~ 82 (113)
T 3lof_A 50 ISWLDAN----------TL--AEKDEFEHKRKELEQVCNPIISGL 82 (113)
T ss_dssp HHHHHHC----------TT--CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcC----------Cc--CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999751 11 146899999999999999999877
|
| >2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A* | Back alignment and structure |
|---|
Probab=87.79 E-value=39 Score=37.70 Aligned_cols=68 Identities=4% Similarity=-0.057 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHc--CC-ccceEEEecCCCCCHHHHHHHHHHHHHc-C--CCeeeeechhHHHHHhh
Q psy18164 396 VEELVAMLLHKAREYASVSA--GQ-VINEAVIIVPGYFNQIERQSMLKAGELA-G--LKVLQLMNDYTAVALNY 463 (1212)
Q Consensus 396 ~eel~a~~L~~lk~~a~~~~--~~-~i~~~VItVP~~f~~~qR~al~~Aa~~A-G--l~~~~li~EptAaAl~y 463 (1212)
+++++..+...+.+...... .. ++..+.|++|...+......+.+..+.. | .-.+.+.|+..|+|+++
T Consensus 45 ~~~~~~~i~~~i~~~~~~~~~~~~~~i~gigi~~pG~vd~~~~~~l~~~l~~~~~~~~~pv~v~NDa~aaa~a~ 118 (347)
T 2ch5_A 45 TDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIATA 118 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCTTCCBSEEEEEETTTTCHHHHHHHHHHHHHHCTTSBSCEEEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccceeEEEEeccCCCchHHHHHHHHHHHHhcCCCCceEEEECcHHHHHHhh
Confidence 44455555555555443321 12 5778999999999877655666655543 4 12458999999999884
|
| >3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=84.91 E-value=1.5 Score=49.07 Aligned_cols=59 Identities=12% Similarity=0.162 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHcCCceEEEecchhHHHHHh-hhhcccCCCCCCCeEEEEEecCCceEEEEEEE
Q psy18164 186 IERQSMLKAGELAGLKVLQLMNDYTAVALNY-GIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 186 ~qr~~l~~Aa~~AGl~~~~li~EP~AAal~y-~~~~~~~~~~~~~~~vlV~D~GggT~Dvsvv~ 248 (1212)
++...+.++-+..|+++ .+|+-.+=|.+.| +....... .....||+|+|||++.+++++
T Consensus 90 N~~~fl~~i~~~tG~~i-~vIsG~eEA~l~~~gv~~~~~~---~~~~~lviDIGGGStEl~~~~ 149 (315)
T 3mdq_A 90 NKQVLIDRIKKEVNIDV-EVIDGAREAELIFRGVQQAVPM---EDHISLAMDIGGGSVEFIIGN 149 (315)
T ss_dssp THHHHHHHHHHHHCCCE-EECCHHHHHHHHHHHHHHHSCC---TTCCEEEEEECSSCEEEEEEC
T ss_pred CHHHHHHHHHHHHCCCe-EEeCHHHHHHHHHHHHHhcCCC---CCCCEEEEEeCCCceEEEEEE
Confidence 33456667777789975 6777555554444 33332221 124689999999999999986
|
| >3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=84.62 E-value=0.93 Score=53.99 Aligned_cols=71 Identities=7% Similarity=0.042 Sum_probs=50.9
Q ss_pred HHHHHHHHH--HHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHH-hCCcccCCCCchhHHHhhHHHHHHhh
Q psy18164 602 ALNEDLFDR--VGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKV-VGVELSKNLNTDEAAALGAVYKAADL 677 (1212)
Q Consensus 602 ~l~~~l~~~--i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~-fg~~i~~~~n~deaVA~GAa~~aa~l 677 (1212)
.++.-+++- +.--++.+++... ..+.|.++||++|.|...+++.++ ||.++...- ..|+.|+|||+.|+.-
T Consensus 363 ~l~RA~lE~~Gia~~~r~~l~~~~----~~~~i~~~GG~a~s~~w~Qi~ADv~~g~pV~~~~-~~e~~alGAA~lA~~a 436 (482)
T 3h6e_A 363 WFERRAAACLYAALVADTALDLIG----STGRILVEGRFAEADVFVRALASLRPDCAVYTAN-AHNDVSFGALRLIDPG 436 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT----CCSEEEEESGGGGCHHHHHHHHHHSTTSEEEEES-SCCCTTGGGHHHHCTT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhc----CCCeEEEeCCcccCHHHHHHHhhhcCCCeEEEcC-CCchHHHHHHHHhCcc
Confidence 444444442 3334444444432 127899999999999999999999 998776554 4568899999999854
|
| >3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A | Back alignment and structure |
|---|
Probab=84.55 E-value=5.8 Score=42.62 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=18.2
Q ss_pred eEEEEEcCCcceEEEEEECCC
Q psy18164 37 AVMSVDLGSEWMKVAIVSPGV 57 (1212)
Q Consensus 37 ~vvGIDfGTt~s~va~~~~g~ 57 (1212)
..++||.|+|++.++++++++
T Consensus 4 M~L~IDIGNT~ik~gl~~~~~ 24 (249)
T 3bex_A 4 MYLLVDVGNTHSVFSITEDGK 24 (249)
T ss_dssp EEEEEEECSSEEEEEEESSSS
T ss_pred eEEEEEECCCeEEEEEEECCE
Confidence 468999999999999998653
|
| >4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A | Back alignment and structure |
|---|
Probab=83.62 E-value=5.8 Score=41.73 Aligned_cols=69 Identities=7% Similarity=0.068 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCcCCcccCCCCCHhhhhhhccccchhhhccccccccccccchhhHHHHHHHHHHH
Q psy18164 1018 EALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLSMVWFRVCWGFFFLLFKQDKGLDTLINETKVWK 1097 (1212)
Q Consensus 1018 ~a~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~W~ 1097 (1212)
++..++..++..++..+..+. +.++.++++.+ ...+++++.||
T Consensus 146 e~kn~le~~i~~~~~~l~~~~------------~~l~~~~k~~i-------------------------~~~l~~~~~~L 188 (219)
T 4e81_A 146 QTRNQGDHLLHSTRKQVEEAG------------DKLPADDKTAI-------------------------ESALTALETAL 188 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHG------------GGSCHHHHHHH-------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh------------hhCCHHHHHHH-------------------------HHHHHHHHHHH
Confidence 444566666766666665421 46788899999 99999999999
Q ss_pred HHHHHHHhhcCCCCCccccHHHHHHHHHHHHHHHHHHHhcc
Q psy18164 1098 EKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKS 1138 (1212)
Q Consensus 1098 ~~~~~~q~~l~~~~dp~~~~~~i~~k~~~l~~~~~~~~~k~ 1138 (1212)
+.. ...+|+.+++.|+..++++..+.
T Consensus 189 ~~~---------------~~~~i~~~~~~L~~~~~~i~~~~ 214 (219)
T 4e81_A 189 KGE---------------DKAAIEAKMQELAQVSQKLMEIA 214 (219)
T ss_dssp HSS---------------CHHHHHHHHHHHHHHTHHHHHHC
T ss_pred hcC---------------CHHHHHHHHHHHHHHHHHHHHHH
Confidence 752 35899999999999999998754
|
| >3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=81.75 E-value=2.2 Score=47.68 Aligned_cols=56 Identities=13% Similarity=0.144 Sum_probs=37.3
Q ss_pred HHHHHHHHHcCCCeeeeechhHHHHHhh-cccccccCCCCCCeEEEEEEcCCCceeEEEEE
Q psy18164 436 QSMLKAGELAGLKVLQLMNDYTAVALNY-GIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 495 (1212)
Q Consensus 436 ~al~~Aa~~AGl~~~~li~EptAaAl~y-~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~ 495 (1212)
..+..+-+..|+++ .+|+...=|.+.| |...... .. ....+|+|+|||||.+++++
T Consensus 93 ~fl~~i~~~tG~~i-~vIsG~eEA~l~~~gv~~~~~--~~-~~~~lviDIGGGStEl~~~~ 149 (315)
T 3mdq_A 93 VLIDRIKKEVNIDV-EVIDGAREAELIFRGVQQAVP--ME-DHISLAMDIGGGSVEFIIGN 149 (315)
T ss_dssp HHHHHHHHHHCCCE-EECCHHHHHHHHHHHHHHHSC--CT-TCCEEEEEECSSCEEEEEEC
T ss_pred HHHHHHHHHHCCCe-EEeCHHHHHHHHHHHHHhcCC--CC-CCCEEEEEeCCCceEEEEEE
Confidence 34555555679987 6776655555544 3333222 12 35699999999999999986
|
| >3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=80.72 E-value=75 Score=35.43 Aligned_cols=67 Identities=15% Similarity=0.157 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHh---CCcccCCC---CchhHHHhhHHHHHHhhc
Q psy18164 607 LFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVV---GVELSKNL---NTDEAAALGAVYKAADLS 678 (1212)
Q Consensus 607 l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~f---g~~i~~~~---n~deaVA~GAa~~aa~ls 678 (1212)
+.+.+...+.++++..+ ++.|+|.||-+.-..+++.|.+.+ |.++..+. -.|.++++|+|.+.....
T Consensus 233 l~~~l~~~~~~a~~~~g-----~~~vvlsGGVa~N~~L~~~L~~~l~~~g~~v~~p~~~~~~D~G~~iG~a~~~~~~~ 305 (334)
T 3eno_A 233 AFAMLVEVLERALYVSG-----KDEILMAGGVALNRRLRDMVTNMAREAGIRSYLTDREYCMDNGIMIAQAALLMYKS 305 (334)
T ss_dssp HHHHHHHHHHHHHHHHT-----CSEEEEESSGGGCHHHHHHHHHHHHHHTSEEECCCTTTTSCCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcC-----CCeEEEcCCHHHHHHHHHHHHHHHHHcCCEEEecCCCCCChHHHHHHHHHHHHHHc
Confidence 45555666666666655 578999999999999999999887 54444333 468899999987655433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1212 | ||||
| d1dkgd2 | 198 | c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATP | 6e-43 | |
| d1bupa1 | 185 | c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPas | 7e-43 | |
| d1bupa1 | 185 | c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPas | 7e-43 | |
| d1bupa2 | 193 | c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATP | 2e-39 | |
| d1dkgd1 | 183 | c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPas | 4e-39 | |
| d1dkgd1 | 183 | c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPas | 4e-39 | |
| d1jcea2 | 196 | c.55.1.1 (A:141-336) Prokaryotic actin homolog Mre | 2e-12 | |
| d1ud0a_ | 84 | a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: | 5e-12 | |
| d1jcea1 | 137 | c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB | 6e-09 | |
| d1jcea1 | 137 | c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB | 6e-09 |
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Score = 153 bits (387), Expect = 6e-43
Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 14/205 (6%)
Query: 478 HVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFL 537
+ YD+G + +SI+ V + VL D LGG + RL ++L
Sbjct: 4 TIAVYDLGGGTFDISIIEIDEVDGE--------KTFEVLATNGDTHLGGEDFDSRLINYL 55
Query: 538 GKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEI----DFKL 593
++F K D+ +P A+ +L + A + K LS+ + + + + +
Sbjct: 56 VEEFK--KDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNI 113
Query: 594 LVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG 653
VTRA+ E+L EDL +R ++ AL+ + + + I VILVG TR+P VQ+K+ + G
Sbjct: 114 KVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFG 173
Query: 654 VELSKNLNTDEAAALGAVYKAADLS 678
E K++N DEA A+GA + L+
Sbjct: 174 KEPRKDVNPDEAVAIGAAVQGGVLT 198
|
| >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Score = 152 bits (385), Expect = 7e-43
Identities = 60/184 (32%), Positives = 96/184 (52%), Gaps = 1/184 (0%)
Query: 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 97
+ +DLGS + V + G EI N + R TP+ VAF ER G+ A+ P+
Sbjct: 3 AVGIDLGSTYSCVGVFQHGKV-EIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPT 61
Query: 98 NSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLL 157
N+ L+G+ D VVQ +P+ + V + + ++ EE+ +M+L
Sbjct: 62 NTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVL 121
Query: 158 HKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYG 217
K +E A G+ + AV+ VP YFN +RQ+ AG +AGL VL+++N+ TA A+ YG
Sbjct: 122 TKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG 181
Query: 218 IFKR 221
+ K+
Sbjct: 182 LDKK 185
|
| >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Score = 152 bits (385), Expect = 7e-43
Identities = 60/184 (32%), Positives = 96/184 (52%), Gaps = 1/184 (0%)
Query: 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 344
+ +DLGS + V + G EI N + R TP+ VAF ER G+ A+ P+
Sbjct: 3 AVGIDLGSTYSCVGVFQHGKV-EIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPT 61
Query: 345 NSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLL 404
N+ L+G+ D VVQ +P+ + V + + ++ EE+ +M+L
Sbjct: 62 NTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVL 121
Query: 405 HKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYG 464
K +E A G+ + AV+ VP YFN +RQ+ AG +AGL VL+++N+ TA A+ YG
Sbjct: 122 TKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG 181
Query: 465 IFKR 468
+ K+
Sbjct: 182 LDKK 185
|
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 193 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Score = 143 bits (361), Expect = 2e-39
Identities = 73/202 (36%), Positives = 108/202 (53%), Gaps = 15/202 (7%)
Query: 478 HVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFL 537
+V+ +D+G + VSI++ E G E V D LGG + R+ +
Sbjct: 6 NVLIFDLGGGTFDVSILTI------EDGIFE------VKSTAGDTHLGGEDFDNRMVNHF 53
Query: 538 GKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTR 597
+F +K KD+ EN RAV +L R K LS++ + +I+ L + IDF +TR
Sbjct: 54 IAEF--KRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITR 111
Query: 598 AEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVV-GVEL 656
A FE LN DLF PVE+AL+ + + I ++LVG TR+PK+Q+ + G EL
Sbjct: 112 ARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKEL 171
Query: 657 SKNLNTDEAAALGAVYKAADLS 678
+K++N DEA A GA +AA LS
Sbjct: 172 NKSINPDEAVAYGAAVQAAILS 193
|
| >d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Score = 141 bits (357), Expect = 4e-39
Identities = 56/184 (30%), Positives = 93/184 (50%), Gaps = 5/184 (2%)
Query: 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFP 96
++ +DLG+ VAI+ P + N E R TP+++A+ + GE G+ A+ P
Sbjct: 2 IIGIDLGTTNSCVAIMDGTTP-RVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNP 60
Query: 97 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAML 156
N+ L+G+ VQ S P+ + + G + + ++ A +
Sbjct: 61 QNTLFAIKRLIGRRFQDEEVQRDVSIMPFK--IIAADNGDAWVEVKGQK-MAPPQISAEV 117
Query: 157 LHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNY 216
L K ++ A G+ + EAVI VP YFN +RQ+ AG +AGL+V +++N+ TA AL Y
Sbjct: 118 LKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAY 177
Query: 217 GIFK 220
G+ K
Sbjct: 178 GLDK 181
|
| >d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Score = 141 bits (357), Expect = 4e-39
Identities = 56/184 (30%), Positives = 93/184 (50%), Gaps = 5/184 (2%)
Query: 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFP 343
++ +DLG+ VAI+ P + N E R TP+++A+ + GE G+ A+ P
Sbjct: 2 IIGIDLGTTNSCVAIMDGTTP-RVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNP 60
Query: 344 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAML 403
N+ L+G+ VQ S P+ + + G + + ++ A +
Sbjct: 61 QNTLFAIKRLIGRRFQDEEVQRDVSIMPFK--IIAADNGDAWVEVKGQK-MAPPQISAEV 117
Query: 404 LHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNY 463
L K ++ A G+ + EAVI VP YFN +RQ+ AG +AGL+V +++N+ TA AL Y
Sbjct: 118 LKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAY 177
Query: 464 GIFK 467
G+ K
Sbjct: 178 GLDK 181
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Score = 65.3 bits (158), Expect = 2e-12
Identities = 25/202 (12%), Positives = 57/202 (28%), Gaps = 27/202 (13%)
Query: 472 NETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQI 531
N P M D+G +T V+++S + ++ ++
Sbjct: 2 NVEEPSGNMVVDIGGGTTEVAVISLG-------------------SIVTWESIRIAGDEM 42
Query: 532 RLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDF 591
+ + E + + + E L +
Sbjct: 43 DEAIVQYVRETYRVAIGERTAERVKIEIGNVFPSKE-----NDELETTVSGIDLSTGLPR 97
Query: 592 KLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPM---DVISQVILVGAGTRVPKVQEKI 648
KL + E + + V L+ + + + + L G G+ + + +
Sbjct: 98 KLTLKGGEVREALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLL 157
Query: 649 TKVVGVELSKNLNTDEAAALGA 670
K G+ + ++ A A GA
Sbjct: 158 QKETGISVIRSEEPLTAVAKGA 179
|
| >d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 84 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 60.6 bits (147), Expect = 5e-12
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 936 KALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENK 995
+ + LES F+ K+ +E E+ + + I+DK +EI +WL+++ AE + E++
Sbjct: 1 RGSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQ-TAEKEEFEHQ 59
Query: 996 LNEINSLVVPI 1006
E+ + PI
Sbjct: 60 QKELEKVCNPI 70
|
| >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Score = 53.6 bits (128), Expect = 6e-09
Identities = 16/77 (20%), Positives = 30/77 (38%)
Query: 138 VFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGEL 197
+ + + + ++L A VI VP +ER+++L AG
Sbjct: 58 AIRPMRDGVIADYTVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLE 117
Query: 198 AGLKVLQLMNDYTAVAL 214
AG + L+ + A A+
Sbjct: 118 AGASKVFLIEEPMAAAI 134
|
| >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Score = 53.6 bits (128), Expect = 6e-09
Identities = 16/77 (20%), Positives = 30/77 (38%)
Query: 385 VFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGEL 444
+ + + + ++L A VI VP +ER+++L AG
Sbjct: 58 AIRPMRDGVIADYTVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLE 117
Query: 445 AGLKVLQLMNDYTAVAL 461
AG + L+ + A A+
Sbjct: 118 AGASKVFLIEEPMAAAI 134
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1212 | |||
| d1dkgd2 | 198 | Heat shock protein 70kDa, ATPase fragment {Escheri | 100.0 | |
| d1bupa2 | 193 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 100.0 | |
| d1bupa1 | 185 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 100.0 | |
| d1dkgd1 | 183 | Heat shock protein 70kDa, ATPase fragment {Escheri | 100.0 | |
| d1bupa1 | 185 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 100.0 | |
| d1dkgd1 | 183 | Heat shock protein 70kDa, ATPase fragment {Escheri | 99.98 | |
| d1jcea2 | 196 | Prokaryotic actin homolog MreB {Thermotoga maritim | 99.81 | |
| d1jcea1 | 137 | Prokaryotic actin homolog MreB {Thermotoga maritim | 99.79 | |
| d1jcea1 | 137 | Prokaryotic actin homolog MreB {Thermotoga maritim | 99.77 | |
| d1yuwa1 | 159 | DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.7 | |
| d1ud0a_ | 84 | DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.43 | |
| d1dkza2 | 118 | DnaK {Escherichia coli [TaxId: 562]} | 99.33 | |
| d2zgya2 | 163 | Plasmid segregation protein ParM {Escherichia coli | 99.32 | |
| d1u00a2 | 115 | Chaperone protein hscA (Hsc66) {Escherichia coli [ | 99.28 | |
| d1e4ft2 | 191 | Cell division protein FtsA {Thermotoga maritima [T | 99.19 | |
| d2fsja1 | 161 | Hypothetical protein Ta0583 {Archaeon Thermoplasma | 98.84 | |
| d1dkza1 | 97 | DnaK {Escherichia coli [TaxId: 562]} | 98.82 | |
| d1u00a1 | 112 | Chaperone protein hscA (Hsc66) {Escherichia coli [ | 98.75 | |
| d1huxa_ | 259 | Hydroxyglutaryl-CoA dehydratase component A {Acida | 98.36 | |
| d1k8ka2 | 258 | Actin-related protein 3, Arp3 {Cow (Bos taurus) [T | 97.47 | |
| d2fxua2 | 225 | Actin {Cow (Bos taurus) [TaxId: 9913]} | 97.17 | |
| d1nbwa3 | 202 | ATPase domain of the glycerol dehydratase reactiva | 97.03 | |
| d2d0oa3 | 203 | Diol dehydratase-reactivating factor large subunit | 96.97 | |
| d1bupa2 | 193 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 96.83 | |
| d1k8kb1 | 190 | Actin-related protein 2, Arp2 {Cow (Bos taurus) [T | 96.67 | |
| d1dkgd2 | 198 | Heat shock protein 70kDa, ATPase fragment {Escheri | 96.07 | |
| d1jcea2 | 196 | Prokaryotic actin homolog MreB {Thermotoga maritim | 95.35 | |
| d2p3ra2 | 247 | Glycerol kinase {Escherichia coli [TaxId: 562]} | 94.68 | |
| d1r59o2 | 235 | Glycerol kinase {Enterococcus casseliflavus [TaxId | 94.12 | |
| d2fxua1 | 140 | Actin {Cow (Bos taurus) [TaxId: 9913]} | 93.7 | |
| d1k8ka1 | 158 | Actin-related protein 3, Arp3 {Cow (Bos taurus) [T | 93.28 | |
| d1ud0a_ | 84 | DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.16 | |
| d2zgya2 | 163 | Plasmid segregation protein ParM {Escherichia coli | 93.08 | |
| d2fxua1 | 140 | Actin {Cow (Bos taurus) [TaxId: 9913]} | 92.99 | |
| d2fsja1 | 161 | Hypothetical protein Ta0583 {Archaeon Thermoplasma | 92.53 | |
| d2fsja2 | 164 | Hypothetical protein Ta0583 {Archaeon Thermoplasma | 90.84 | |
| d1e4ft1 | 193 | Cell division protein FtsA {Thermotoga maritima [T | 90.02 | |
| d2i7na2 | 212 | Pantothenate kinase 1, PANK1 {Human (Homo sapiens) | 89.67 | |
| d1k8ka1 | 158 | Actin-related protein 3, Arp3 {Cow (Bos taurus) [T | 88.83 | |
| d1e4ft1 | 193 | Cell division protein FtsA {Thermotoga maritima [T | 85.87 | |
| d2ewsa1 | 267 | Type II pantothenate kinase, CoaW {Staphylococcus | 83.69 | |
| d2fsja2 | 164 | Hypothetical protein Ta0583 {Archaeon Thermoplasma | 83.61 |
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=100.00 E-value=1.3e-36 Score=321.23 Aligned_cols=193 Identities=31% Similarity=0.449 Sum_probs=177.5
Q ss_pred CeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCH
Q psy18164 476 PVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENP 555 (1212)
Q Consensus 476 ~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ 555 (1212)
+++||||||||||||+||+++.... ....+++++++++..+||++||++|++|+.++|.+ +++.++..++
T Consensus 2 ~~~vlV~D~GggT~Dvsv~~~~~~~--------~~~~~~vl~~~~~~~lGG~~~D~~l~~~~~~~~~~--~~~~~~~~~~ 71 (198)
T d1dkgd2 2 NRTIAVYDLGGGTFDISIIEIDEVD--------GEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKK--DQGIDLRNDP 71 (198)
T ss_dssp EEEEEEEEECSSCEEEEEEEEEC------------CCCEEEEEEEESSCSHHHHHHHHHHHHHHHHHH--HHCCCSTTCH
T ss_pred CeEEEEEEcCCCcEEEEEEEEEccC--------CCcEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHH--HhCCCCccCH
Confidence 4789999999999999999997221 14478999999999999999999999999999988 4556888999
Q ss_pred HHHHHHHHHHHHhhhhccCCceeEEEEeecccC----cceEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccE
Q psy18164 556 RAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDE----IDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQ 631 (1212)
Q Consensus 556 ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~----~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ 631 (1212)
+++.||+++||++|+.||.+.++.+.++.+.++ .+++++|||++|+++|+|+++++.++|.++|++++++..+|+.
T Consensus 72 ~~~~rL~~~~e~~K~~Ls~~~~~~i~~~~~~~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~a~~~~~~Id~ 151 (198)
T d1dkgd2 72 LAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDD 151 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHSHHHHHHHHHHHHHHHHTTTCCTTTCCE
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEEEeeeecCCCCCceEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHCcE
Confidence 999999999999999999999999999877655 4788999999999999999999999999999999999999999
Q ss_pred EEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhc
Q psy18164 632 VILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 678 (1212)
Q Consensus 632 ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls 678 (1212)
|+|+||+||+|+|++.|+++||.++..++||++|||+|||++||+||
T Consensus 152 v~lvGG~sr~p~l~~~i~~~f~~~~~~~~~p~~aVa~GAa~~aa~lS 198 (198)
T d1dkgd2 152 VILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLT 198 (198)
T ss_dssp EEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHTTTTC
T ss_pred EEEEcCccCCHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHHHHhcC
Confidence 99999999999999999999998899999999999999999999886
|
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=4.8e-36 Score=316.37 Aligned_cols=189 Identities=37% Similarity=0.531 Sum_probs=179.8
Q ss_pred CeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCH
Q psy18164 476 PVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENP 555 (1212)
Q Consensus 476 ~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ 555 (1212)
.++||||||||||||+||+++. +..+++++++++..+||++||++|++|+.++|.. +.+.++..++
T Consensus 4 e~~VlV~D~GggT~Dvsv~~~~------------~~~~~v~~~~g~~~lGG~~~D~~l~~~~~~~~~~--~~~~~~~~~~ 69 (193)
T d1bupa2 4 ERNVLIFDLGGGTFDVSILTIE------------DGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKR--KHKKDISENK 69 (193)
T ss_dssp CEEEEEEEECSSCEEEEEEEEE------------TTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHH--HHSCCCTTCH
T ss_pred CcEEEEEEeCCCeEEEEEEEEe------------CCEEEEEEecCCCCcchhHHHHHHHHHHHHHHHH--HhCCCCccCH
Confidence 6899999999999999999986 3478999999999999999999999999999988 4456888999
Q ss_pred HHHHHHHHHHHHhhhhccCCceeEEEEeecccCcceEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEE
Q psy18164 556 RAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILV 635 (1212)
Q Consensus 556 ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLv 635 (1212)
+++.+|+.+||++|+.||.+.++.+.++.++.+.++.++|||++|+++++|+++++..+|+++|+++++...+|+.|+|+
T Consensus 70 ~~~~~l~~~~e~~K~~ls~~~~~~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lv 149 (193)
T d1bupa2 70 RAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLV 149 (193)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSEEEEEEEEEETTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHHHHTCCGGGCCEEEEE
T ss_pred HHHHHHHHHHHHHhhccCCCceEEEEEecccCCCccceEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCCHHHHHHHHHHhC-CcccCCCCchhHHHhhHHHHHHhhc
Q psy18164 636 GAGTRVPKVQEKITKVVG-VELSKNLNTDEAAALGAVYKAADLS 678 (1212)
Q Consensus 636 GGssriP~Vq~~l~~~fg-~~i~~~~n~deaVA~GAa~~aa~ls 678 (1212)
||+||+|+||+.|+++|+ .++..++||++|||+|||++||++|
T Consensus 150 GG~sr~p~v~~~i~~~f~~~~i~~~~~p~~aVa~GaA~~aa~ls 193 (193)
T d1bupa2 150 GGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILS 193 (193)
T ss_dssp SGGGGCHHHHHHHHHHTTTCCCBCSSCGGGHHHHHHHHHHHHHC
T ss_pred CCccccHHHHHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHhhC
Confidence 999999999999999997 7888899999999999999999986
|
| >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=4.5e-35 Score=306.43 Aligned_cols=182 Identities=33% Similarity=0.524 Sum_probs=166.6
Q ss_pred eEEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEecCcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCHHH
Q psy18164 284 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVV 363 (1212)
Q Consensus 284 ~vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~~~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~~v 363 (1212)
.|||||||||||+||++.+| .++++.|.+|+|++||+|+|.++++++|..|..+..++|.++++++|||||+.++++.+
T Consensus 2 ~vvGIDfGTt~s~va~~~~g-~~~ii~~~~~~r~~Ps~i~~~~~~~~vG~~a~~~~~~~p~~~i~~~KrllG~~~~~~~~ 80 (185)
T d1bupa1 2 PAVGIDLGSTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVV 80 (185)
T ss_dssp CCEEEEECSSEEEEEEEETT-EEEECCCTTSCSSEECCEEECSSCEEETHHHHTTTTTCGGGEECCHHHHTTCCTTCHHH
T ss_pred CEEEEEcChhcEEEEEEECC-EEEEEECCCCCccceeEEEECCCcEEEeechHHHhhcCcccchhHHHHHhCCCCccHHH
Confidence 58999999999999999999 68999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCCceeeecCCCcceEEEEc-CCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHHH
Q psy18164 364 QLFKSRFPYYDIVADEERGTIVFKT-NDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 442 (1212)
Q Consensus 364 ~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~Aa 442 (1212)
+...+.+|+...... ++....+.. +....++|++|++++|++|++.++.+++.++.++|||||++|++.||++|++||
T Consensus 81 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~el~a~~l~~l~~~a~~~~~~~~~~~VitvPa~f~~~qr~~~~~Aa 159 (185)
T d1bupa1 81 QSDMKHWPFMVVNDA-GRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAG 159 (185)
T ss_dssp HHHHTTCSSEEEEET-TEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHH
T ss_pred HHHhhcCCceEEcCC-CCccEEEEEcCCceEEcHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCHHHHHHHHHHH
Confidence 999999998655433 344444443 344789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeeeeechhHHHHHhhcccc
Q psy18164 443 ELAGLKVLQLMNDYTAVALNYGIFK 467 (1212)
Q Consensus 443 ~~AGl~~~~li~EptAaAl~y~~~~ 467 (1212)
++|||++++||+||+|||++|++++
T Consensus 160 ~~AGl~~~~li~EP~AAAl~Ygldk 184 (185)
T d1bupa1 160 TIAGLNVLRIINEPTAAAIAYGLDK 184 (185)
T ss_dssp HHTTCEEEEEEEHHHHHHHHTTTTS
T ss_pred HHcCCCeEEEEcCHHHHHHHhcccC
Confidence 9999999999999999999999864
|
| >d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=100.00 E-value=2.2e-34 Score=300.72 Aligned_cols=180 Identities=32% Similarity=0.467 Sum_probs=166.0
Q ss_pred EEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEe-cCcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCHHH
Q psy18164 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVV 363 (1212)
Q Consensus 285 vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~-~~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~~v 363 (1212)
|||||||||||+||++.+| .++++.|.+|+|++||+|+|. ++++++|..|..+..++|+++++++|||||+.+.++.+
T Consensus 2 VvGIDfGTt~s~va~~~~~-~~~ii~n~~~~~~~ps~v~~~~~~~~~~G~~A~~~~~~~p~~~i~~~KrllG~~~~~~~~ 80 (183)
T d1dkgd1 2 IIGIDLGTTNSCVAIMDGT-TPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEV 80 (183)
T ss_dssp CCEEECCSSEEEEEEEETT-EEEECCCTTSCSEEECEEEECTTSCEEESHHHHTTSTTCGGGEEECGGGTTTCBSCSHHH
T ss_pred EEEEEcChhcEEEEEEECC-EEEEEEcCCCcccccceeeecCCCCEEccHHHHHhhhcCCccEEeeeHHHcCCCCCcHHH
Confidence 6899999999999999988 679999999999999999996 46899999999999999999999999999999999999
Q ss_pred HhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHHHH
Q psy18164 364 QLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGE 443 (1212)
Q Consensus 364 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~Aa~ 443 (1212)
+.....+||..+..++ +...+...+ ..++|++|++++|++|++.++.+++.++.++|||||++|++.||++|++||+
T Consensus 81 ~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~s~~~l~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~~r~~l~~Aa~ 157 (183)
T d1dkgd1 81 QRDVSIMPFKIIAADN--GDAWVEVKG-QKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGR 157 (183)
T ss_dssp HHHTTTCSSEEEECSS--SBEEEEETT-EEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEECBCTTCCHHHHHHHHHHHH
T ss_pred HhhhhcCCEEEEEcCC--CcEEEEECC-EEECHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 9999999997765543 455666655 6899999999999999999999999999999999999999999999999999
Q ss_pred HcCCCeeeeechhHHHHHhhccccc
Q psy18164 444 LAGLKVLQLMNDYTAVALNYGIFKR 468 (1212)
Q Consensus 444 ~AGl~~~~li~EptAaAl~y~~~~~ 468 (1212)
+|||++++||+||+|||++|++++.
T Consensus 158 ~AG~~~~~li~EP~AAAl~Ygl~k~ 182 (183)
T d1dkgd1 158 IAGLEVKRIINEPTAAALAYGLDKG 182 (183)
T ss_dssp HTTCEESCCCBHHHHHHHHHTCCC-
T ss_pred HcCCCEEEEecCHHHHHHHhcccCC
Confidence 9999999999999999999998653
|
| >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.9e-33 Score=291.64 Aligned_cols=182 Identities=34% Similarity=0.547 Sum_probs=165.5
Q ss_pred eEEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEecCceeEccchhhhhccCCCChHHHHHHHhCCCCCCHHH
Q psy18164 37 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVV 116 (1212)
Q Consensus 37 ~vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~~~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~~~ 116 (1212)
+|||||||||||+||++.+|+ ++++.+..|++.+||+|+|.++++++|..|...+..+|.++++++|||||+.++++.+
T Consensus 2 ~vvGIDfGTt~s~va~~~~g~-~~ii~~~~~~r~~Ps~i~~~~~~~~vG~~a~~~~~~~p~~~i~~~KrllG~~~~~~~~ 80 (185)
T d1bupa1 2 PAVGIDLGSTYSCVGVFQHGK-VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVV 80 (185)
T ss_dssp CCEEEEECSSEEEEEEEETTE-EEECCCTTSCSSEECCEEECSSCEEETHHHHTTTTTCGGGEECCHHHHTTCCTTCHHH
T ss_pred CEEEEEcChhcEEEEEEECCE-EEEEECCCCCccceeEEEECCCcEEEeechHHHhhcCcccchhHHHHHhCCCCccHHH
Confidence 579999999999999999884 7999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCceeeeccCCCceEEEEc-CCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHHH
Q psy18164 117 QLFKSRFPYYDIVADEERGTIVFKT-NDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 195 (1212)
Q Consensus 117 ~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~Aa 195 (1212)
+...+.+++. ++.+++.....+.. +..+.++|++|++++|++|++.++.+++.++.++|||||++|++.||+++++||
T Consensus 81 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~el~a~~l~~l~~~a~~~~~~~~~~~VitvPa~f~~~qr~~~~~Aa 159 (185)
T d1bupa1 81 QSDMKHWPFM-VVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAG 159 (185)
T ss_dssp HHHHTTCSSE-EEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHH
T ss_pred HHHhhcCCce-EEcCCCCccEEEEEcCCceEEcHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCHHHHHHHHHHH
Confidence 9999999875 44444444444443 345789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceEEEecchhHHHHHhhhhc
Q psy18164 196 ELAGLKVLQLMNDYTAVALNYGIFK 220 (1212)
Q Consensus 196 ~~AGl~~~~li~EP~AAal~y~~~~ 220 (1212)
+.|||++++||+||+|||++|++.+
T Consensus 160 ~~AGl~~~~li~EP~AAAl~Ygldk 184 (185)
T d1bupa1 160 TIAGLNVLRIINEPTAAAIAYGLDK 184 (185)
T ss_dssp HHTTCEEEEEEEHHHHHHHHTTTTS
T ss_pred HHcCCCeEEEEcCHHHHHHHhcccC
Confidence 9999999999999999999998754
|
| >d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=99.98 E-value=1.1e-32 Score=287.81 Aligned_cols=179 Identities=32% Similarity=0.467 Sum_probs=163.0
Q ss_pred EEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEe-cCceeEccchhhhhccCCCChHHHHHHHhCCCCCCHHH
Q psy18164 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVV 116 (1212)
Q Consensus 38 vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~-~~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~~~ 116 (1212)
|||||||||||+||++.+|+ ++++++..|.+.+||+|+|. ++.+++|..|..+..++|.++++++|||||+.+.++.+
T Consensus 2 VvGIDfGTt~s~va~~~~~~-~~ii~n~~~~~~~ps~v~~~~~~~~~~G~~A~~~~~~~p~~~i~~~KrllG~~~~~~~~ 80 (183)
T d1dkgd1 2 IIGIDLGTTNSCVAIMDGTT-PRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEV 80 (183)
T ss_dssp CCEEECCSSEEEEEEEETTE-EEECCCTTSCSEEECEEEECTTSCEEESHHHHTTSTTCGGGEEECGGGTTTCBSCSHHH
T ss_pred EEEEEcChhcEEEEEEECCE-EEEEEcCCCcccccceeeecCCCCEEccHHHHHhhhcCCccEEeeeHHHcCCCCCcHHH
Confidence 68999999999999998774 78999999999999999996 56899999999999999999999999999999999999
Q ss_pred HHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHHHH
Q psy18164 117 QLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGE 196 (1212)
Q Consensus 117 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~Aa~ 196 (1212)
+.....+||..+.. +++...+.. .++.++|++|++++|++|++.++.++|.++.++|||||++|++.||++|++||+
T Consensus 81 ~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~s~~~l~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~~r~~l~~Aa~ 157 (183)
T d1dkgd1 81 QRDVSIMPFKIIAA--DNGDAWVEV-KGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGR 157 (183)
T ss_dssp HHHTTTCSSEEEEC--SSSBEEEEE-TTEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEECBCTTCCHHHHHHHHHHHH
T ss_pred HhhhhcCCEEEEEc--CCCcEEEEE-CCEEECHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 99999999864443 344555544 467899999999999999999999999999999999999999999999999999
Q ss_pred HcCCceEEEecchhHHHHHhhhhc
Q psy18164 197 LAGLKVLQLMNDYTAVALNYGIFK 220 (1212)
Q Consensus 197 ~AGl~~~~li~EP~AAal~y~~~~ 220 (1212)
.|||++++||+||+|||++|++.+
T Consensus 158 ~AG~~~~~li~EP~AAAl~Ygl~k 181 (183)
T d1dkgd1 158 IAGLEVKRIINEPTAAALAYGLDK 181 (183)
T ss_dssp HTTCEESCCCBHHHHHHHHHTCCC
T ss_pred HcCCCEEEEecCHHHHHHHhcccC
Confidence 999999999999999999999754
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=99.81 E-value=1.8e-20 Score=196.68 Aligned_cols=179 Identities=17% Similarity=0.201 Sum_probs=137.6
Q ss_pred CeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCH
Q psy18164 476 PVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENP 555 (1212)
Q Consensus 476 ~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ 555 (1212)
+..+|||||||||||+||++. | . +.+.+....||.+++..+..++...+... . ..
T Consensus 6 ~~gvlV~DiGGGT~Dvsi~~~--------g------~---~~~~~~~~~gg~~~~~~~~~~~~~~~~~~--~------~~ 60 (196)
T d1jcea2 6 PSGNMVVDIGGGTTEVAVISL--------G------S---IVTWESIRIAGDEMDEAIVQYVRETYRVA--I------GE 60 (196)
T ss_dssp SSCEEEEEECSSCEEEEEEET--------T------E---EEEEEEESCSHHHHHHHHHHHHHHHHCEE--C------CH
T ss_pred CCceEEEEcCCCcEEEEEEEc--------C------C---EeEEeeecCCCcccccchhhhhhhhhccc--c------cc
Confidence 788999999999999999974 2 1 22334457899999999999999888651 1 12
Q ss_pred HHHHHHHHHHHHhhh-hccCCceeEEEEeecccCcceEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC---CccE
Q psy18164 556 RAVAKLFKEAGRLKN-VLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMD---VISQ 631 (1212)
Q Consensus 556 ra~~kL~~~aek~K~-~LS~n~~~~i~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~---~i~~ 631 (1212)
............++. ..+......+....+.++.+....++|.+|++++.+++.++..++.++++.+..... .++.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 140 (196)
T d1jcea2 61 RTAERVKIEIGNVFPSKENDELETTVSGIDLSTGLPRKLTLKGGEVREALRSVVVAIVESVRTTLEKTPPELVSDIIERG 140 (196)
T ss_dssp HHHHHHHHHHCBCSCCHHHHHCEEEEEEEETTTTEEEEEEEEHHHHHHHTHHHHHHHHHHHHHHHHTSCHHHHHHHHHHC
T ss_pred hhHHHHHHHHhhhhhhhhccccceeeeeeeccCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc
Confidence 222222222222211 112223345666777788888999999999999999999999999999998765432 2567
Q ss_pred EEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhhcC
Q psy18164 632 VILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLST 679 (1212)
Q Consensus 632 ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~ls~ 679 (1212)
|+||||+||+|.|+++|++.||.++..+.||++|||+|||+++..++.
T Consensus 141 IvLvGGsS~ip~v~~~l~~~fg~~v~~~~~P~~aVA~GAai~~~~~~~ 188 (196)
T d1jcea2 141 IFLTGGGSLLRGLDTLLQKETGISVIRSEEPLTAVAKGAGMVLDKVNI 188 (196)
T ss_dssp EEEESGGGCSBTHHHHHHHHHSSCEEECSSTTTHHHHHHHHGGGCHHH
T ss_pred eEEeCchhcchhHHHHHHHHHCcCCccCCChHHHHHHHHHHHHHCHHH
Confidence 999999999999999999999999999999999999999998876654
|
| >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=99.79 E-value=9e-20 Score=179.77 Aligned_cols=132 Identities=21% Similarity=0.234 Sum_probs=100.8
Q ss_pred EEEEecCceeEEEEEEeCCCCeEEecCCCCCccceEEEEEe---cCcEeecHHHHHhhhhCCCchHhHhHHhcCCCCCCH
Q psy18164 285 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH---KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 361 (1212)
Q Consensus 285 vvGID~Gtt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~f~---~~~r~~G~~A~~~~~~~p~~t~~~~k~llG~~~~~~ 361 (1212)
.||||||||||+||+...| ++.+ .|+.+++. +....+|..|..+..++|.+.. ..|
T Consensus 2 ~iGIDlGTtns~va~~~~~----~v~~------~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~-~~k---------- 60 (137)
T d1jcea1 2 DIGIDLGTANTLVFLRGKG----IVVN------EPSVIAIDSTTGEILKVGLEAKNMIGKTPATIK-AIR---------- 60 (137)
T ss_dssp EEEEEECSSEEEEEETTTE----EEEE------EESCEEEETTTCCEEEESHHHHTTTTCCCTTEE-EEC----------
T ss_pred eEEEEcChhhEEEEEeCCC----EEee------cCCcceEecCCCeEEEEehHHhhhhhhccccce-eEE----------
Confidence 5899999999999875433 3333 36666663 2334577777655444333321 000
Q ss_pred HHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHHHcCCccceEEEecCCCCCHHHHHHHHHH
Q psy18164 362 VVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 441 (1212)
Q Consensus 362 ~v~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~i~~~VItVP~~f~~~qR~al~~A 441 (1212)
... +..+.+.++.++++.+++..++...+..+.++|||||++|++.||+++++|
T Consensus 61 -------------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VItVPa~f~~~qR~at~~A 114 (137)
T d1jcea1 61 -------------------------PMR-DGVIADYTVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDA 114 (137)
T ss_dssp -------------------------CEE-TTEESSHHHHHHHHHHHHHHHHTSCCSCCCEEEEEECTTCCHHHHHHHHHH
T ss_pred -------------------------ecc-CCccCcHHHHHHHHHHHHHHHHhhcCccccceEEEeecccCHHHHHHHHHH
Confidence 111 135778899999999999999999999999999999999999999999999
Q ss_pred HHHcCCCeeeeechhHHHHHhh
Q psy18164 442 GELAGLKVLQLMNDYTAVALNY 463 (1212)
Q Consensus 442 a~~AGl~~~~li~EptAaAl~y 463 (1212)
|++|||++++||+||+||||.+
T Consensus 115 a~~AGl~vv~li~EPtAAAiGa 136 (137)
T d1jcea1 115 GLEAGASKVFLIEEPMAAAIGS 136 (137)
T ss_dssp HHHTTCSEEEEEEHHHHHHHHT
T ss_pred HHHcCCCEEEEeCCHHHHHhCC
Confidence 9999999999999999999854
|
| >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=99.77 E-value=1.3e-19 Score=178.64 Aligned_cols=132 Identities=20% Similarity=0.236 Sum_probs=99.8
Q ss_pred EEEEEcCCcceEEEEEECCCceEEecCCCCCcccceEEEEe---cCceeEccchhhhhccCCCChHHHHHHHhCCCCCCH
Q psy18164 38 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH---KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 114 (1212)
Q Consensus 38 vvGIDfGTt~s~va~~~~g~~~~ii~~~~g~~~~PS~V~~~---~~~~~iG~~A~~~~~~~p~~~~~~~KrllG~~~~~~ 114 (1212)
.||||||||||+||+...| .++ + .|+.+++. +....+|..|......++.+... .
T Consensus 2 ~iGIDlGTtns~va~~~~~---~v~-~------~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~-~----------- 59 (137)
T d1jcea1 2 DIGIDLGTANTLVFLRGKG---IVV-N------EPSVIAIDSTTGEILKVGLEAKNMIGKTPATIKA-I----------- 59 (137)
T ss_dssp EEEEEECSSEEEEEETTTE---EEE-E------EESCEEEETTTCCEEEESHHHHTTTTCCCTTEEE-E-----------
T ss_pred eEEEEcChhhEEEEEeCCC---EEe-e------cCCcceEecCCCeEEEEehHHhhhhhhcccccee-E-----------
Confidence 5899999999999874333 222 2 26666663 23444666666554444433110 0
Q ss_pred HHHHHHhcCCceeeeccCCCceEEEEcCCcceeeHHHHHHHHHHHHHHHHHHhcCCccccEEEccCCCCCHHHHHHHHHH
Q psy18164 115 VVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 194 (1212)
Q Consensus 115 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~s~~ev~~~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~qr~~l~~A 194 (1212)
....+..+.+.+...+++.+++..++...+..+.++|||||++|++.||+++++|
T Consensus 60 -------------------------k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VItVPa~f~~~qR~at~~A 114 (137)
T d1jcea1 60 -------------------------RPMRDGVIADYTVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDA 114 (137)
T ss_dssp -------------------------CCEETTEESSHHHHHHHHHHHHHHHHTSCCSCCCEEEEEECTTCCHHHHHHHHHH
T ss_pred -------------------------EeccCCccCcHHHHHHHHHHHHHHHHhhcCccccceEEEeecccCHHHHHHHHHH
Confidence 0012334667789999999999999999999999999999999999999999999
Q ss_pred HHHcCCceEEEecchhHHHHHh
Q psy18164 195 GELAGLKVLQLMNDYTAVALNY 216 (1212)
Q Consensus 195 a~~AGl~~~~li~EP~AAal~y 216 (1212)
|+.|||++++||+||+|||+++
T Consensus 115 a~~AGl~vv~li~EPtAAAiGa 136 (137)
T d1jcea1 115 GLEAGASKVFLIEEPMAAAIGS 136 (137)
T ss_dssp HHHTTCSEEEEEEHHHHHHHHT
T ss_pred HHHcCCCEEEEeCCHHHHHhCC
Confidence 9999999999999999999864
|
| >d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.70 E-value=3.2e-17 Score=162.99 Aligned_cols=154 Identities=21% Similarity=0.347 Sum_probs=125.2
Q ss_pred ccceeEEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccCc---eEEEEEeccCcccCChhhhhc
Q psy18164 682 KVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQIAM 758 (1212)
Q Consensus 682 kv~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~~~~ 758 (1212)
.++++.+.|++||++||++. |+ .+.+||++|+++|++++..|++..++ +.|.||+| +.....
T Consensus 3 ~v~~~~l~DV~p~slGie~~-----gg---~~~~iI~rnt~iP~~~~~~f~T~~d~Q~~v~i~i~qG-e~~~~~------ 67 (159)
T d1yuwa1 3 NVQDLLLLDVTPLSLGIETA-----GG---VMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEG-ERAMTK------ 67 (159)
T ss_dssp CTTSSCCCCBCSSCEEEEET-----TT---EEEEEECTTCBSSEEEEEEEEESSTTCSEEEEEEEES-SSSBGG------
T ss_pred ccceEEEEEecCCceEEEEc-----CC---EEEEEEcCCcccceeeeEEEeeccCCCcEEEEEEEcC-chhhcc------
Confidence 47899999999999999986 43 47899999999999999999987665 89999999 776432
Q ss_pred cCceeeeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEEeeeeccccccCccccccccccccccCCCCCC
Q psy18164 759 LGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKTDE 838 (1212)
Q Consensus 759 ~~~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e~~~e~~~~~e~t~~~~~~~~~~~f~~~~~~~ 838 (1212)
.+..||+|.|.|+++++++. +.|.|+|.+|.||+|+|++.+ ..|.
T Consensus 68 -~n~~lg~f~l~~ip~~~~G~-------~~I~Vtf~id~nGil~V~A~d---------~~Tg------------------ 112 (159)
T d1yuwa1 68 -DNNLLGKFELTGIPPAPRGV-------PQIEVTFDIDANGILNVSAVD---------KSTG------------------ 112 (159)
T ss_dssp -GSEEEEEEEEECCCCCSTTC-------CCEEEEEEECTTCCEEEEEEE---------TTTC------------------
T ss_pred -CccEEEEEEECCCCcCCCCC-------ceEEEEEEEcCCCeEEEEEEE---------cCCC------------------
Confidence 36678899999999997765 789999999999999999884 1110
Q ss_pred CCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhcccCCCCCCCCCCCceeeeeecceeeEeecCCCCCCHHHHHHHH
Q psy18164 839 NEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSL 918 (1212)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~ls~eel~~~~ 918 (1212)
++.. +.+ ......|+.++++++.
T Consensus 113 --------------------------------------------------~~~~----i~I---~~~~~~Ls~eEIek~i 135 (159)
T d1yuwa1 113 --------------------------------------------------KENK----ITI---TNDKGRLSKEDIERMV 135 (159)
T ss_dssp --------------------------------------------------CEEE----EEE---CCCSSCSCHHHHHHHH
T ss_pred --------------------------------------------------CeEE----EEE---ecCCCCCCHHHHHHHH
Confidence 0001 111 1123459999999999
Q ss_pred HHHHhHhHHHHHHHHHHHHHhhHH
Q psy18164 919 SKLDSLNQIEHAKVRKEKALNSLE 942 (1212)
Q Consensus 919 ~~l~~l~~~D~~~~~~~eakN~LE 942 (1212)
++++++...|+..+++.++||.||
T Consensus 136 ~eae~~~~eDe~~r~~ieakn~lE 159 (159)
T d1yuwa1 136 QEAEKYKAEDEKQRDKVSSKNSLE 159 (159)
T ss_dssp HHHHHTTTHHHHHTTSSCSCEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999987
|
| >d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.43 E-value=4.2e-14 Score=124.92 Aligned_cols=76 Identities=26% Similarity=0.458 Sum_probs=71.2
Q ss_pred HHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHhhHHHHHHHHhh
Q psy18164 937 ALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLVVPIWERHREH 1013 (1212)
Q Consensus 937 akN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~~~~~~~Kl~eL~~~~~pi~~R~~e~ 1013 (1212)
++|.||+|||.+|+.|+++.+..++++++++.|...|+++++|||++ .++++++|++|+++|+.+++||..|+++.
T Consensus 2 ~~N~LEsyiy~~r~~l~d~~~~~kl~~~dk~~i~~~l~e~~~WL~~n-~~a~~ee~~~k~~eLe~~~~PI~~k~y~~ 77 (84)
T d1ud0a_ 2 GSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKN-QTAEKEEFEHQQKELEKVCNPIITKLYQS 77 (84)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGTTTSCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTHHHHHHHHHHHHHHTTS
T ss_pred chhhHHHHHHHHHHHhcchhhccccCHHHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 58999999999999999888999999999999999999999999975 68999999999999999999999997543
|
| >d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=3.3e-12 Score=119.72 Aligned_cols=98 Identities=20% Similarity=0.352 Sum_probs=83.2
Q ss_pred EEEeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccCc---eEEEEEeccCcccCChhhhhccCcee
Q psy18164 687 ITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQIAMLGTKQ 763 (1212)
Q Consensus 687 ~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~~~~~~~~~ 763 (1212)
.+.|++||++||+.. ++ .+.+|+++|+++|++++..|++..|+ +.|.||+| +..... .+..
T Consensus 2 ~l~DV~p~slGIe~~-----~g---~~~~iI~rnt~iP~~~t~~f~T~~dnQ~~i~i~v~qG-e~~~~~-------~n~~ 65 (118)
T d1dkza2 2 LLLDVTPLSLGIETM-----GG---VMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQG-ERKRAA-------DNKS 65 (118)
T ss_dssp CCCCBCSSCEEEEET-----TT---EEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEES-SCSBGG-------GSEE
T ss_pred EEEeecCCceeEEEc-----CC---EEEEEEeccccCCCcceEEEEcccCCCceEEEEEeee-eecccc-------CceE
Confidence 568999999999876 33 37899999999999999999987555 89999999 765322 3567
Q ss_pred eeeEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEE
Q psy18164 764 ISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIE 807 (1212)
Q Consensus 764 i~~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e 807 (1212)
|+.+.|+|+++++++. +.|+++|++|.||+|+|++.+
T Consensus 66 lg~~~i~~ip~~p~G~-------~~I~Vtf~iD~nGiL~V~a~d 102 (118)
T d1dkza2 66 LGQFNLDGINPAPRGM-------PQIEVTFDIDADGILHVSAKD 102 (118)
T ss_dssp EEEEEEECCCSCCTTC-------SCEEEEEEECTTCCEEEEEEE
T ss_pred EEEEEEcCCccCCCCC-------cEEEEEEEecCCCeEEEEEEE
Confidence 8899999999887665 689999999999999999985
|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Probab=99.32 E-value=4.1e-13 Score=135.42 Aligned_cols=154 Identities=12% Similarity=0.083 Sum_probs=99.9
Q ss_pred CeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCH
Q psy18164 476 PVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENP 555 (1212)
Q Consensus 476 ~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ 555 (1212)
..++||||+||||||+++++- + ...+....++..+||.+|+..|++++...+... ..
T Consensus 6 ~~~ilViDiGggTtDi~v~~~--------~------~~~~~~~~~~~~~G~~~i~~~i~~~l~~~~~~~---------~~ 62 (163)
T d2zgya2 6 LDSLLIIDLGGTTLDISQVMG--------K------LSGISKIYGDSSLGVSLVTSAVKDALSLARTKG---------SS 62 (163)
T ss_dssp TCEEEEEEECSSCEEEEEEEG--------G------GCCEEEEEEECSCCTHHHHHHHHHHTTCCSBGG---------GH
T ss_pred CCCEEEEECCCCcEEEEEEcC--------C------eEEEEEeeccccccchHHHHHHHHhhHHhhchh---------hh
Confidence 578999999999999999861 2 344555667789999999999988775443320 01
Q ss_pred HHHHHHHHHHHHhhhhccCCceeEEEEeecccCcceEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEE
Q psy18164 556 RAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILV 635 (1212)
Q Consensus 556 ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLv 635 (1212)
.....+ +...+..- +..........++.+++++.+.+.++.+.+.+.+. ...+++.|+|+
T Consensus 63 ~~~~~~---~~~~~~~~-------------~~~~~~~~~~~~~~i~~~i~~~~~~i~~~i~~~~~----~~~~~~~iil~ 122 (163)
T d2zgya2 63 YLADDI---IIHRKDNN-------------YLKQRINDENKISIVTEAMNEALRKLEQRVLNTLN----EFSGYTHVMVI 122 (163)
T ss_dssp HHHHHH---HHTTTCHH-------------HHHHHSSSSCTHHHHHHHHHHHHHHHHHHHHHHHT----TCCCCCEEEEE
T ss_pred hhHHHH---HHhhcccc-------------cccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhc----cccccceEEEE
Confidence 000001 00000000 00000111234555666666666666555555543 45689999999
Q ss_pred cCCcCCHHHHHHHHHHhCC---cccCCCCchhHHHhhHHHHH
Q psy18164 636 GAGTRVPKVQEKITKVVGV---ELSKNLNTDEAAALGAVYKA 674 (1212)
Q Consensus 636 GGssriP~Vq~~l~~~fg~---~i~~~~n~deaVA~GAa~~a 674 (1212)
||+|+ .+++.|+++|+. .+...-||..|+|+|+..+|
T Consensus 123 GGGs~--ll~~~lk~~~~~~~~~v~i~~~P~~A~a~G~~~~g 162 (163)
T d2zgya2 123 GGGAE--LICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG 162 (163)
T ss_dssp STTHH--HHHHHHHHTSCCCGGGEECCSCGGGHHHHHHHHHH
T ss_pred CchHH--HHHHHHHHHhCCCCCCeEECCCcHhHHHHHHHHhc
Confidence 99996 599999999982 56678899999999998876
|
| >d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=1.2e-11 Score=115.50 Aligned_cols=96 Identities=19% Similarity=0.387 Sum_probs=81.3
Q ss_pred EeeccccEEEEEeeecCCCcceEEEEEEecCCCCcCceEEEEEEeccCc---eEEEEEeccCcccCChhhhhccCceeee
Q psy18164 689 KDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQIAMLGTKQIS 765 (1212)
Q Consensus 689 ~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~~~~~~~~~i~ 765 (1212)
.|++||++||+.. |+ .+.+||++|+++|++++..|++..++ +.|.||+| +..... .+..|+
T Consensus 1 lDV~p~slGIe~~-----gg---~~~~iI~rnt~iP~~~t~~f~T~~d~Q~~v~i~V~qG-e~~~~~-------~N~~lg 64 (115)
T d1u00a2 1 MDVIPLSLGLETM-----GG---LVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQG-ERELVQ-------DCRSLA 64 (115)
T ss_dssp CCBCSSCEEEEET-----TT---EEEEEECTTCBSSEEEEEEEECSSTTCCCEEEEEEEC-SSSBGG-------GSEEEE
T ss_pred CCccCcceeEEEc-----CC---EEEEEEcCCCCCCceeeeeEEcCCCCceEEEEEEhhc-cCcccc-------cceEee
Confidence 3899999999876 33 37899999999999999999987554 89999999 765321 366788
Q ss_pred eEEecCccccccCCCcccccCCceEEEEEeCCCccEEEEEEE
Q psy18164 766 KFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIE 807 (1212)
Q Consensus 766 ~~~i~gi~~~~~~~~~~~~~~~~i~~~f~ld~~Gil~v~~~e 807 (1212)
.+.+.|+++++++. +.|+|+|++|.||+|+|++.+
T Consensus 65 ~~~l~~ip~~p~G~-------~~I~Vtf~id~nGiL~V~A~d 99 (115)
T d1u00a2 65 RFALRGIPALPAGG-------AHIRVTFQVDADGLLSVTAME 99 (115)
T ss_dssp EEEECCCCCCSTTC-------SCEEEEEEECTTCCEEEEEEE
T ss_pred EEEEeCcccCcccc-------ccEEEEEEccCCceEEEEEEE
Confidence 99999999987765 689999999999999999985
|
| >d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Probab=99.19 E-value=3.5e-11 Score=124.21 Aligned_cols=157 Identities=17% Similarity=0.188 Sum_probs=109.8
Q ss_pred CeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCH
Q psy18164 476 PVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENP 555 (1212)
Q Consensus 476 ~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ 555 (1212)
...++++|||+|||+++++. .| .+... ....+||++|+..|++.+. +
T Consensus 6 ~~Gv~vvDiG~~tt~i~i~~--------~G------~l~~~---~~i~~GG~~iT~~Ia~~l~------------i---- 52 (191)
T d1e4ft2 6 DRGVVVVNLGYNFTGLIAYK--------NG------VPIKI---SYVPVGMKHVIKDVSAVLD------------T---- 52 (191)
T ss_dssp HHCEEEEEECSSCEEEEEEE--------TT------EEEEE---EEESCCHHHHHHHHHHHHT------------C----
T ss_pred hCCEEEEEeCCCcEEEEEEE--------CC------eEEEE---EEEeeChHHHHHHHHHHhc------------c----
Confidence 35699999999999999986 23 23222 2246999999999986552 1
Q ss_pred HHHHHHHHHHHHhhhhccC-----CceeEEEEeecccCcceEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhcCC------
Q psy18164 556 RAVAKLFKEAGRLKNVLSA-----NNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAV------ 624 (1212)
Q Consensus 556 ra~~kL~~~aek~K~~LS~-----n~~~~i~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~------ 624 (1212)
-+.+||++|+.+.. .....+.+.. .+......+++..+.+++.+.++++...+.+.++....
T Consensus 53 -----~~~~AE~iK~~~g~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~l~~ii~~~~~ei~~~i~~~~~~~~~~~~~~~ 125 (191)
T d1e4ft2 53 -----SFEESERLIITHGNAVYNDLKEEEIQYRG--LDGNTIKTTTAKKLSVIIHARLREIMSKSKKFFREVEAKIVEEG 125 (191)
T ss_dssp -----CHHHHHHHHHHHCCSCCTTCCCCEEEEEC--TTSSCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred -----cHHHHHHHHhhccccccccccchhccccc--ccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhc
Confidence 13568999986531 1222233333 23445567999999999999999998888888865321
Q ss_pred CCCCccEEEEEcCCcCCHHHHHHHHHHhCCccc--C---------------CCCchhHHHhhHHH
Q psy18164 625 PMDVISQVILVGAGTRVPKVQEKITKVVGVELS--K---------------NLNTDEAAALGAVY 672 (1212)
Q Consensus 625 ~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~--~---------------~~n~deaVA~GAa~ 672 (1212)
....+..|+|+||+|++|.+.+.+++.||.++. . .-+|..|+|.|.+|
T Consensus 126 ~~~~~~~IvLtGGgs~l~gl~~~l~~~l~~~Vri~~~~~~~~~~~~~~~~~~~~P~~ata~Gl~l 190 (191)
T d1e4ft2 126 EIGIPGGVVLTGGGAKIPRINELATEVFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVF 190 (191)
T ss_dssp --CGGGCEEEESGGGGSTTHHHHHHHHHCSCEEECCGGGSSSCCEETCHHHHTCGGGHHHHHHHT
T ss_pred ccccCceEEEecchhhhhhHHHHHHHHHCCCeEEeCCccccccccCCcHHhhcCcHHHHHHHHHh
Confidence 112355699999999999999999999984431 1 12467788888875
|
| >d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.84 E-value=2.4e-09 Score=106.98 Aligned_cols=152 Identities=18% Similarity=0.180 Sum_probs=99.7
Q ss_pred CeEEEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCH
Q psy18164 476 PVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENP 555 (1212)
Q Consensus 476 ~~~vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ 555 (1212)
+.++||+|+||||||++++... +..+ +....+....|+.+++..|++++..+|.. .. ..
T Consensus 5 ~g~~lviDIG~gTtDi~v~~~~------------~~~~-~~~~~~~~~~g~~~i~~~i~~~i~~~~~~------~~--~~ 63 (161)
T d2fsja1 5 PGYGVVIDVGSRTTDVLTINLM------------DMEP-VVELSFSLQIGVGDAISALSRKIAKETGF------VV--PF 63 (161)
T ss_dssp SSEEEEEEECSSCEEEEEEETT------------TTEE-CGGGCEEESCCHHHHHHHHHHHHHHHHCC------CC--CH
T ss_pred CCcEEEEEcCcCeEEEEEEECC------------CeEE-EEEEeccHhHHHHHHHHHHHHHHHHHHHh------hh--hH
Confidence 7889999999999999999731 1111 11122335789999999999999888754 11 11
Q ss_pred HHHHHHHHHHHHhhhhccCCceeEEEEeecccCcceEEEEeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEEE
Q psy18164 556 RAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILV 635 (1212)
Q Consensus 556 ra~~kL~~~aek~K~~LS~n~~~~i~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLv 635 (1212)
.. ++.+.. .. ..+. + .-.--++.+.++++++++.+...+...+.. ..+.++.|+|+
T Consensus 64 ~~-------~~~~~~----~~---~~~~----g---~~~~~~~~i~~~~~~~~~~i~~~i~~~~~~---~~~~i~~iil~ 119 (161)
T d2fsja1 64 DL-------AQEALS----HP---VMFR----Q---KQVGGPEVSGPILEDLANRIIENIRLNLRG---EVDRVTSLIPV 119 (161)
T ss_dssp HH-------HHHHTT----SC---EEET----T---EEECSHHHHHHHHHHHHHHHHHHHHHHHGG---GGGGEEEEEEE
T ss_pred HH-------HHHHHh----cc---cccc----c---ccchHHHHHHHHHHHHHHHHHHHHHHHHhh---ccccccEEEEE
Confidence 11 111111 11 1111 1 111124566777777777777777766643 24579999999
Q ss_pred cCCcCCHHHHHHHHHHhCC--cccCCCCchhHHHhhHHHHH
Q psy18164 636 GAGTRVPKVQEKITKVVGV--ELSKNLNTDEAAALGAVYKA 674 (1212)
Q Consensus 636 GGssriP~Vq~~l~~~fg~--~i~~~~n~deaVA~GAa~~a 674 (1212)
||+|++ +++.+++.|+. .+....||..|.|+|--..|
T Consensus 120 GGga~l--l~~~l~~~~~~~~~~~~~~~p~~ana~G~~~~~ 158 (161)
T d2fsja1 120 GGGSNL--IGDRFEEIAPGTLVKIKPEDLQFANALGYRDAA 158 (161)
T ss_dssp STTHHH--HGGGGGGGSTTCBCCCCTTTTTTHHHHHHHHHH
T ss_pred CCHHHH--HHHHHHHHccCCeeecCCCCccchHHHHHHHHH
Confidence 999987 78999999984 33456799999999986554
|
| >d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Escherichia coli [TaxId: 562]
Probab=98.82 E-value=1.5e-08 Score=91.48 Aligned_cols=94 Identities=16% Similarity=0.285 Sum_probs=87.3
Q ss_pred CCHHHHHHHHHHHHhHhHHHHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCC
Q psy18164 909 LNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAE 988 (1212)
Q Consensus 909 ls~eel~~~~~~l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~ 988 (1212)
||.++|++|++....+...|+.+|++.+++|.+|+|||.++..|. ++...++++++..|...+.++.+||..+ +
T Consensus 1 LS~~EIerMi~eAe~~a~eD~~~r~~ie~rn~ae~~i~~~e~~l~--e~~~~l~~~~k~~i~~~i~~l~~~l~~~----d 74 (97)
T d1dkza1 1 LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVE--EAGDKLPADDKTAIESALTALETALKGE----D 74 (97)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHGGGSCHHHHHHHHHHHHHHHHHHTSS----C
T ss_pred CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhccCCHHHHHHHHHHHHHHHHHHhcC----C
Confidence 789999999999999999999999999999999999999999994 5778899999999999999999999743 5
Q ss_pred HHHHHHHHHHHHHhhHHHHH
Q psy18164 989 ADVLENKLNEINSLVVPIWE 1008 (1212)
Q Consensus 989 ~~~~~~Kl~eL~~~~~pi~~ 1008 (1212)
.+.++.++.+|+..+.++..
T Consensus 75 ~~~i~~~~~~L~~~~~~l~e 94 (97)
T d1dkza1 75 KAAIEAKMQELAQVSQKLME 94 (97)
T ss_dssp HHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999865
|
| >d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Probab=98.75 E-value=3.2e-08 Score=91.66 Aligned_cols=98 Identities=11% Similarity=0.165 Sum_probs=90.7
Q ss_pred CCHHHHHHHHHHHHhHhHHHHHHHHHHHHHhhHHHHHHHHHhccccccccCCCCHhHHHHHHHHHHHHHHhhhhcCCCCC
Q psy18164 909 LNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAE 988 (1212)
Q Consensus 909 ls~eel~~~~~~l~~l~~~D~~~~~~~eakN~LEs~iy~~r~kL~~~~~~~~~t~eere~l~~~l~e~~~WL~edg~~a~ 988 (1212)
||.++|+++++....+...|..+|++.+++|.+|++||.++..|. ++...++++++..|...+.++..||.++ +
T Consensus 1 LS~eEIerMi~eA~~~a~eD~~~R~~ie~~n~ae~~i~~~e~~L~--e~~~~L~~~e~~~i~~~i~~l~~~l~~~----d 74 (112)
T d1u00a1 1 LTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALA--ADAALLSAAERQVIDDAAAHLSEVAQGD----D 74 (112)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHGGGSCHHHHHHHHHHHHHHHHHTTSS----C
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHhhCCHHHHHHHHHHHHHHHHHHHCC----C
Confidence 789999999999999999999999999999999999999999994 5677899999999999999999999754 5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHh
Q psy18164 989 ADVLENKLNEINSLVVPIWERHRE 1012 (1212)
Q Consensus 989 ~~~~~~Kl~eL~~~~~pi~~R~~e 1012 (1212)
...++..++.|+..+.|+..|..+
T Consensus 75 ~~~I~~~~~~L~~~~~~~a~~~m~ 98 (112)
T d1u00a1 75 VDAIEQAIKNVDKQTQDFAARRMD 98 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999998876544
|
| >d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Hydroxyglutaryl-CoA dehydratase component A species: Acidaminococcus fermentans [TaxId: 905]
Probab=98.36 E-value=2.6e-05 Score=82.69 Aligned_cols=70 Identities=19% Similarity=0.206 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHHHHhh
Q psy18164 604 NEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADL 677 (1212)
Q Consensus 604 ~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~aa~l 677 (1212)
+...+..+...+...+... .+.+.|++.||.++.|.+++.+++.++.++..+.+++++.|+|||++|..-
T Consensus 187 ~~~~~~~~~~~~~~~~~~~----~~~~~Iv~gGGv~~~~~~~~~l~~~l~~~i~~~~~~~~agaiGAA~lA~~~ 256 (259)
T d1huxa_ 187 IAGIHRSVASRVIGLANRV----GIVKDVVMTGGVAQNYGVRGALEEGLGVEIKTSPLAQYNGALGAALYAYKK 256 (259)
T ss_dssp HHHHHHHHHHHHHHHHHTT----CCCSSEEEESGGGGCHHHHHHHHHHHCSCEECCGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc----cCCCcEEEEccccccHHHHHHHHHHHCCCEEcCCCccHHHHHHHHHHHHHH
Confidence 3344444444444444332 245679999999999999999999999999999999999999999999754
|
| >d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 3, Arp3 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.47 E-value=0.00019 Score=76.36 Aligned_cols=177 Identities=12% Similarity=0.120 Sum_probs=97.6
Q ss_pred EEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHH
Q psy18164 479 VMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAV 558 (1212)
Q Consensus 479 vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~ 558 (1212)
=+|+|+|++.|+|+-|- .|. -+........+||.+++..|.++|.++- .......+....
T Consensus 5 GlVVDiG~~~T~v~PV~--------eG~-------~l~~~~~~~~~GG~~lt~~L~~~L~~~~-----~~~~~~~~~~~~ 64 (258)
T d1k8ka2 5 GTVIDSGDGVTHVIPVA--------EGY-------VIGSCIKHIPIAGRDITYFIQQLLRDRE-----VGIPPEQSLETA 64 (258)
T ss_dssp EEEEEESSSCEEEEEEE--------TTE-------ECGGGCEEESCSHHHHHHHHHHHHHTTC-----CCCCGGGHHHHH
T ss_pred EEEEEcCCCcEEEEEEE--------CCE-------EchhheEEEeCcHHHHHHHHHHHHHHcC-----CCCCcHHHHHHH
Confidence 48999999999998775 242 1112222357999999999988876421 100000011111
Q ss_pred HHHHH-----------HHHHhhhhccCCceeEEEEeecccCcceEEEEeHHHHHH---HHHH------HHHHHHHHHHHH
Q psy18164 559 AKLFK-----------EAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEA---LNED------LFDRVGYPVEQA 618 (1212)
Q Consensus 559 ~kL~~-----------~aek~K~~LS~n~~~~i~ie~l~~~~d~~~~itR~efe~---l~~~------l~~~i~~~i~~~ 618 (1212)
..+.. +.++....-+. .................+.+..+.|.- ++.| ....+.+.|.++
T Consensus 65 ~~~ke~~~~v~~d~~~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~er~~~~E~lF~p~~~~~~~~~~l~~~i~~s 143 (258)
T d1k8ka2 65 KAVKERYSYVCPDLVKEFNKYDTDGSK-WIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEV 143 (258)
T ss_dssp HHHHHHHCCCCSCHHHHHHHHHHSGGG-TCEEEEEECTTTCCEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHH
T ss_pred HhHHhhhcccccchHHHHHhhcccccc-cccccccccccCCCCeEEecCccceeccHHHhhhhhhcccccccchHHHHHH
Confidence 11100 11111111111 111223333333445567777776631 2222 112467788888
Q ss_pred HHhcCCCCC--CccEEEEEcCCcCCHHHHHHHHHHhC------------------------CcccCCCCchhHHHhhHHH
Q psy18164 619 LKSSAVPMD--VISQVILVGAGTRVPKVQEKITKVVG------------------------VELSKNLNTDEAAALGAVY 672 (1212)
Q Consensus 619 L~~a~~~~~--~i~~ViLvGGssriP~Vq~~l~~~fg------------------------~~i~~~~n~deaVA~GAa~ 672 (1212)
+..+..... -...|+|+||+|.+|.+.++|.+.+. .++..+.++..++=+||++
T Consensus 144 i~~~~~d~r~~L~~nIvl~GG~s~~~Gf~eRL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~r~~s~W~Ggsi 223 (258)
T d1k8ka2 144 IQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSM 223 (258)
T ss_dssp HHHSCGGGTTHHHHCEEEESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTCTTHHHHHHHH
T ss_pred HHhccHHhhHHHHhCEEEecCcccCCCHHHHHHHHHHhhcchhhhhhhhccccccCCCCceeeEecCCCCCceehHHHHH
Confidence 887754332 25779999999999999988865542 0122333566788889998
Q ss_pred HHHh
Q psy18164 673 KAAD 676 (1212)
Q Consensus 673 ~aa~ 676 (1212)
+|..
T Consensus 224 la~l 227 (258)
T d1k8ka2 224 LAST 227 (258)
T ss_dssp HTTS
T ss_pred HHcC
Confidence 8763
|
| >d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.17 E-value=0.00035 Score=72.50 Aligned_cols=166 Identities=14% Similarity=0.161 Sum_probs=94.9
Q ss_pred EEEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHH
Q psy18164 479 VMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAV 558 (1212)
Q Consensus 479 vlv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~ 558 (1212)
=||+|+|++.|.|+-|- .|. -+........+||++++..|.++|...-.. .. .+...
T Consensus 4 glVVDiG~~~t~v~PV~--------eG~-------~l~~~~~~~~~GG~~lt~~l~~~L~~~~~~-------~~-~~~~~ 60 (225)
T d2fxua2 4 GIVLDSGDGVTHNVPIY--------EGY-------ALPHAIMRLDLAGRDLTDYLMKILTERGYS-------FV-TTAER 60 (225)
T ss_dssp EEEEEECSSCEEEEEEE--------TTE-------ECGGGCEEESCCHHHHHHHHHHHHHHHTCC-------CC-SHHHH
T ss_pred EEEEEcCCCcEEEEEEE--------CCE-------EchhceEEEECcHHHHHHHHHHHHhhccCC-------cC-CHHHH
Confidence 38999999999988775 242 111222234699999999999988754321 11 11111
Q ss_pred HHHHHHHHHhhhhc----------------cCCceeEEEEeecccCcceEEEEeHHHHH---HHHHHH-----HHHHHHH
Q psy18164 559 AKLFKEAGRLKNVL----------------SANNEHFAQIEGLIDEIDFKLLVTRAEFE---ALNEDL-----FDRVGYP 614 (1212)
Q Consensus 559 ~kL~~~aek~K~~L----------------S~n~~~~i~ie~l~~~~d~~~~itR~efe---~l~~~l-----~~~i~~~ 614 (1212)
. + .+..|+.+ +........ +-|+ ..+.+..+.|. -++.|- ...+.++
T Consensus 61 ~-~---~~~~ke~~~~~~~d~~~e~~~~~~~~~~~~~~~---lpdg--~~i~i~~er~~~~E~lF~p~~~~~~~~gl~~~ 131 (225)
T d2fxua2 61 E-I---VRDIKEKLCYVALDFENEMATAASSSSLEKSYE---LPDG--QVITIGNERFRCPETLFQPSFIGMESAGIHET 131 (225)
T ss_dssp H-H---HHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEE---CTTS--CEEEESTHHHHHHHTTTCGGGGTCCSCCHHHH
T ss_pred H-H---HHHHHHHHhhcccchhHHHhhcccCcccceeEE---CCCC--CEEEEchHhccccHhhcCccccCCccCChhHH
Confidence 1 1 11222222 111111111 2223 24556655552 222221 1236666
Q ss_pred HHHHHHhcCCC--CCCccEEEEEcCCcCCHHHHHHHHHHhC--------CcccCCCCchhHHHhhHHHHHHh
Q psy18164 615 VEQALKSSAVP--MDVISQVILVGAGTRVPKVQEKITKVVG--------VELSKNLNTDEAAALGAVYKAAD 676 (1212)
Q Consensus 615 i~~~L~~a~~~--~~~i~~ViLvGGssriP~Vq~~l~~~fg--------~~i~~~~n~deaVA~GAa~~aa~ 676 (1212)
|.+++..+..+ ..-...|+|+||+|++|.+.++|.+.+. .++....++..++=.||+++|..
T Consensus 132 i~~sI~~~~~d~r~~l~~nIvl~GG~s~~~G~~~RL~~El~~~~~~~~~~~v~~~~~~~~~aW~Ggsilasl 203 (225)
T d2fxua2 132 TYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL 203 (225)
T ss_dssp HHHHHHTSCHHHHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHSCTTCCCCEECCTTTTSHHHHHHHHHHHC
T ss_pred HHHHhhcCCcchhhhhhcCEEEeCCcccCCchhHHHHhHHHHhhccccceEEecCCCCCeeEEeCHhhhhcC
Confidence 77777654321 1124579999999999999999987552 23444556778899999999863
|
| >d1nbwa3 c.55.1.6 (A:406-607) ATPase domain of the glycerol dehydratase reactivase alpha subunit {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ATPase domain of dehydratase reactivase alpha subunit domain: ATPase domain of the glycerol dehydratase reactivase alpha subunit species: Klebsiella pneumoniae [TaxId: 573]
Probab=97.03 E-value=0.0015 Score=61.85 Aligned_cols=59 Identities=20% Similarity=0.241 Sum_probs=42.1
Q ss_pred HHHHHHhc--CCCCCCccEEEEEcCCcCCHHHHHHHHHHhC--------CcccCCCCchhHHHhhHHHH
Q psy18164 615 VEQALKSS--AVPMDVISQVILVGAGTRVPKVQEKITKVVG--------VELSKNLNTDEAAALGAVYK 673 (1212)
Q Consensus 615 i~~~L~~a--~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg--------~~i~~~~n~deaVA~GAa~~ 673 (1212)
+.++|+.- +-+..+|..|+|+|||+-=.-|-+++.+.+. -++.-..-|..|||.|.++.
T Consensus 130 a~RaL~~vsp~gnir~i~fvVlvGGsalDfEip~~vtdaLs~y~vVaGRgNIrG~eGPRnAVAtGLvls 198 (202)
T d1nbwa3 130 CLRALRQVSPGGSIRDIAFVVLVGGSSLDFEIPQLITEALSHYGVVAGQGNIRGTEGPRNAVATGLLLA 198 (202)
T ss_dssp HHHHHSSSSTTCCSTTCCEEEEESGGGGSSSHHHHHHHHHHTTTCEEEECCGGGTSCSCCHHHHHHHHH
T ss_pred HHHHHhhcCCCCCcCCCceEEEecCchhhhhHHHHHHHHHhhCceeeeccccccccCcHHHHHHHHhhh
Confidence 34445443 2345789999999999987777777776652 35556667889999998764
|
| >d2d0oa3 c.55.1.6 (A:404-606) Diol dehydratase-reactivating factor large subunit DdrA {Klebsiella oxytoca [TaxId: 571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ATPase domain of dehydratase reactivase alpha subunit domain: Diol dehydratase-reactivating factor large subunit DdrA species: Klebsiella oxytoca [TaxId: 571]
Probab=96.97 E-value=0.0017 Score=61.24 Aligned_cols=61 Identities=20% Similarity=0.205 Sum_probs=45.0
Q ss_pred HHHHHHhc--CCCCCCccEEEEEcCCcCCHHHHHHHHHHhC--------CcccCCCCchhHHHhhHHHHHH
Q psy18164 615 VEQALKSS--AVPMDVISQVILVGAGTRVPKVQEKITKVVG--------VELSKNLNTDEAAALGAVYKAA 675 (1212)
Q Consensus 615 i~~~L~~a--~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg--------~~i~~~~n~deaVA~GAa~~aa 675 (1212)
+.++|+.- +-+..+|..|+|||||+-=.-|-+++.+.+. -++.-..-|..|||.|.++.-+
T Consensus 130 a~RaL~~vsP~gnir~i~fVVlvGGsalDfEip~~vtdaLs~y~iVaGrgNIrG~eGPRnAVAtGLvl~y~ 200 (203)
T d2d0oa3 130 ALRALRQVSPTGNIRDIPFVVLVGGSSLDFEVPQLVTDALAHYRLVAGRGNIRGSEGPRNAVATGLILSWH 200 (203)
T ss_dssp HHHHHHHHSSSSCGGGCCEEEEESGGGGCSSHHHHHHHHTTTSSCEEEECCGGGTSTTSCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCCCCeEEEecCchhhhhHHHHHHHHHhhCceeeeccccccccCchHHHHHHHHHHhh
Confidence 34455543 3356789999999999998888888888874 2555566788999999986543
|
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.83 E-value=0.00027 Score=71.54 Aligned_cols=32 Identities=19% Similarity=0.270 Sum_probs=27.2
Q ss_pred CCeEEEEEecCCceEEEEEEEEEeeccccccc
Q psy18164 228 NPVHVMFYDMGAWSTTVSIVSYQVVKTKERGM 259 (1212)
Q Consensus 228 ~~~~vlV~D~GggT~Dvsvv~~~~~~~~~~~~ 259 (1212)
.+++||||||||||+|+|++++..+..++++.
T Consensus 3 ~e~~VlV~D~GggT~Dvsv~~~~~~~~~v~~~ 34 (193)
T d1bupa2 3 AERNVLIFDLGGGTFDVSILTIEDGIFEVKST 34 (193)
T ss_dssp SCEEEEEEEECSSCEEEEEEEEETTEEEEEEE
T ss_pred CCcEEEEEEeCCCeEEEEEEEEeCCEEEEEEe
Confidence 36799999999999999999998877666544
|
| >d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 2, Arp2 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.67 E-value=0.00099 Score=67.01 Aligned_cols=147 Identities=16% Similarity=0.172 Sum_probs=80.8
Q ss_pred EEEEcCCCceeEEEEEEEeeecccCCccccCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHH
Q psy18164 480 MFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVA 559 (1212)
Q Consensus 480 lv~D~Gggt~dvsvv~~~~~~~~~~g~~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~~~~~~~d~~~~~ra~~ 559 (1212)
||+|+|++.|.++-|- .|. .+........+||++++..|.+.+.+.-.. .....+.....
T Consensus 2 lVVDiG~~~T~v~PV~--------dG~-------~l~~a~~~~~igG~~lt~~l~~~l~~~~~~-----~~~~~~~~~~~ 61 (190)
T d1k8kb1 2 VVVDSGDGVTHICPVY--------EGF-------SLPHLTRRLDIAGRDITRYLIKLLLLRGYA-----FNHSADFETVR 61 (190)
T ss_dssp CEEEECSSCEEEECEE--------TTE-------ECSTTCEEESCCHHHHHHHHHHHHHHTTCC-----CCTTTTHHHHH
T ss_pred EEEEcCCCcEEEEEeE--------CCE-------EcccceEEEeccHHHHHHHHHHHHHhcCCc-----ccchHHHHHHH
Confidence 6999999999987664 242 111222234699999999988887643211 01111111111
Q ss_pred HHHHHH---------HHhhhhccCCceeEEEEeecccCcceEEEEeHHHHHHHHHHHHH---------HHHHHHHHHHHh
Q psy18164 560 KLFKEA---------GRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFD---------RVGYPVEQALKS 621 (1212)
Q Consensus 560 kL~~~a---------ek~K~~LS~n~~~~i~ie~l~~~~d~~~~itR~efe~l~~~l~~---------~i~~~i~~~L~~ 621 (1212)
.+...+ +..+...+........ +.++ ..+.+..+.|. ..+.+|+ .+..+|.+++..
T Consensus 62 ~i~~~~~~v~~~~~~e~~~~~~~~~~~~~~~---lpdg--~~i~i~~er~~-~~E~lF~p~~~~~~~~~l~~~i~~si~~ 135 (190)
T d1k8kb1 62 MIKEKLCYVGYNIEQEQKLALETTVLVESYT---LPDG--RIIKVGGERFE-APEALFQPHLINVEGVGVAELLFNTIQA 135 (190)
T ss_dssp HHHHHHCCCCSSHHHHHHHHHHCSTTCEEEE---CTTS--CEEEECTHHHH-TGGGGTCGGGGTCCSCCHHHHHHHHHHH
T ss_pred HHHhhhhhhcccHHHHHHhhhcccceeeeee---cCCC--cEEEEChhhcc-ccccccChhhcCcccccHHHHHHHHHHh
Confidence 111110 0111111112211111 2222 24567777664 2333443 277788888887
Q ss_pred cCCCC--CCccEEEEEcCCcCCHHHHHHHHHHh
Q psy18164 622 SAVPM--DVISQVILVGAGTRVPKVQEKITKVV 652 (1212)
Q Consensus 622 a~~~~--~~i~~ViLvGGssriP~Vq~~l~~~f 652 (1212)
+..+. .-...|+|+||+|.+|.+.++|...+
T Consensus 136 c~~d~r~~L~~NIvl~GG~Sl~pGf~~RL~~EL 168 (190)
T d1k8kb1 136 ADIDTRSEFYKHIVLSGGSTMYPGLPSRLEREL 168 (190)
T ss_dssp SCTTTHHHHHTTCEEESGGGCSTTHHHHHHHHH
T ss_pred CCHhHHHHHHcCEEEECcccCCCCHHHHHHHHH
Confidence 75432 22567999999999999999997655
|
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=96.07 E-value=0.0013 Score=66.53 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=20.8
Q ss_pred eEEEEEecCCceEEEEEEEEEeec
Q psy18164 230 VHVMFYDMGAWSTTVSIVSYQVVK 253 (1212)
Q Consensus 230 ~~vlV~D~GggT~Dvsvv~~~~~~ 253 (1212)
++||||||||||+|+||+++.+..
T Consensus 3 ~~vlV~D~GggT~Dvsv~~~~~~~ 26 (198)
T d1dkgd2 3 RTIAVYDLGGGTFDISIIEIDEVD 26 (198)
T ss_dssp EEEEEEEECSSCEEEEEEEEEC--
T ss_pred eEEEEEEcCCCcEEEEEEEEEccC
Confidence 589999999999999999998543
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=95.35 E-value=0.0038 Score=62.38 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.5
Q ss_pred CCCeEEEEEecCCceEEEEEEE
Q psy18164 227 TNPVHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 227 ~~~~~vlV~D~GggT~Dvsvv~ 248 (1212)
.++..+|||||||||||+||++
T Consensus 4 ~~~~gvlV~DiGGGT~Dvsi~~ 25 (196)
T d1jcea2 4 EEPSGNMVVDIGGGTTEVAVIS 25 (196)
T ss_dssp TSSSCEEEEEECSSCEEEEEEE
T ss_pred CCCCceEEEEcCCCcEEEEEEE
Confidence 3467899999999999999986
|
| >d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glycerol kinase domain: Glycerol kinase species: Enterococcus casseliflavus [TaxId: 37734]
Probab=94.12 E-value=0.044 Score=56.35 Aligned_cols=83 Identities=17% Similarity=0.214 Sum_probs=58.0
Q ss_pred EeHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcccCCCCchhHHHhhHHHH
Q psy18164 595 VTRAEFEAL-NEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYK 673 (1212)
Q Consensus 595 itR~efe~l-~~~l~~~i~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~Vq~~l~~~fg~~i~~~~n~deaVA~GAa~~ 673 (1212)
-+|.++-.. ++-+.=.+...++..-+.++. .++.|.+.||+++.|.+.+.+.+++|.++....+. |+.++|||+.
T Consensus 116 ~~~~~l~rAvlEgiaf~~~~~~e~~~~~~g~---~~~~i~~~GG~s~s~~~~Qi~Advlg~~v~~~~~~-e~~alGaA~l 191 (235)
T d1r59o2 116 TTKEDFVRATLQAVAYQSKDVIDTMKKDSGI---DIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANL-ETTALGAAYL 191 (235)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEESTTSCHHHHHHHHHHHSSEEEEESCC-CTTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEecCcchhCHHHHhhhhhccceeeeecccc-chHHHHHHHH
Confidence 356655432 233333444444443334454 36789999999999999999999999877765444 6899999999
Q ss_pred HHhhcCCc
Q psy18164 674 AADLSTGF 681 (1212)
Q Consensus 674 aa~ls~~f 681 (1212)
|+.-.+.+
T Consensus 192 a~~~~G~~ 199 (235)
T d1r59o2 192 AGLAVGFW 199 (235)
T ss_dssp HHHHHTSS
T ss_pred HHHHcCCC
Confidence 99876654
|
| >d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.70 E-value=0.11 Score=48.41 Aligned_cols=64 Identities=8% Similarity=0.009 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCcc--ccEEEccCCCCCHHHHHHHHHHH-HHcCCceEEEecchhHHHHHhh
Q psy18164 151 ELVAMLLHKAREYASVSAGQVI--NEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYG 217 (1212)
Q Consensus 151 ev~~~~L~~l~~~a~~~~~~~~--~~~VitVPa~f~~~qr~~l~~Aa-~~AGl~~~~li~EP~AAal~y~ 217 (1212)
+....++.++.. ..++... ..+++|-|..-+...|+.+.+.+ +..+++.+.+...|.++++++|
T Consensus 74 d~~e~~~~~~~~---~~l~~~~~~~pvlltE~~~~~~~~r~~~~EilFE~~~vp~~~~~~~~~ls~ys~G 140 (140)
T d2fxua1 74 DDMEKIWHHTFY---NELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASG 140 (140)
T ss_dssp HHHHHHHHHHHH---TTSCCCGGGSCEEEEECTTCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHTT
T ss_pred HHHHHHHHHhhh---hhcccCCCCCcceeeccCCCCHHHHHHHHHHhhccCCCCEEEEEhhHHhHhhcCC
Confidence 456666666554 2333332 45999999999999999888877 7779999999999999987654
|
| >d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 3, Arp3 species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.28 E-value=0.2 Score=47.68 Aligned_cols=66 Identities=8% Similarity=-0.098 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHhcCC--ccccEEEccCCCCCHHHHHHHHHHH-HHcCCceEEEecchhHHHHHhhhh
Q psy18164 151 ELVAMLLHKAREYASVSAGQ--VINEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIF 219 (1212)
Q Consensus 151 ev~~~~L~~l~~~a~~~~~~--~~~~~VitVPa~f~~~qr~~l~~Aa-~~AGl~~~~li~EP~AAal~y~~~ 219 (1212)
+....++.++.. ..++. .-..+++|-|...+..+|+.+.+.+ +..+++.+.+...|..++++++..
T Consensus 85 d~~e~l~~~~~~---~~l~v~~~~~pvlltEp~~~~~~~Re~~~EilFE~~~vpa~~~~~~~~Lslya~g~~ 153 (158)
T d1k8ka1 85 DLMERFMEQVIF---KYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTS 153 (158)
T ss_dssp HHHHHHHHHHHH---TTTCCCGGGCCEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHH---HhcccCCCCCceeeeecCCCCHHHHHHHHHHHhhhcCCCEEEEEchhhhhheeCCCC
Confidence 455555554432 23332 2346999999999999999877766 777999999999999999887753
|
| >d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.16 E-value=0.14 Score=43.29 Aligned_cols=51 Identities=16% Similarity=0.209 Sum_probs=44.7
Q ss_pred CCCCHhhhhhhccccchhhhccccccccccccchhhHHHHHHHHHHHHHHHHHHhhcCCCCCccccHHHHHHHHHHHHHH
Q psy18164 1051 NLFSDIELKSLDTLSMVWFRVCWGFFFLLFKQDKGLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALERE 1130 (1212)
Q Consensus 1051 ~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~W~~~~~~~q~~l~~~~dp~~~~~~i~~k~~~l~~~ 1130 (1212)
..+++++++.+ .+.|+++..||++... . +..+++.|++.|+..
T Consensus 24 ~kl~~~dk~~i-------------------------~~~l~e~~~WL~~n~~---a---------~~ee~~~k~~eLe~~ 66 (84)
T d1ud0a_ 24 GKINDEDKQKI-------------------------LDKCNEIISWLDKNQT---A---------EKEEFEHQQKELEKV 66 (84)
T ss_dssp TTSCHHHHHHH-------------------------HHHHHHHHHHHHHHHH---H---------HHHHHHHHTHHHHHH
T ss_pred cccCHHHHHHH-------------------------HHHHHHHHHHHhcCCC---C---------CHHHHHHHHHHHHHH
Confidence 67999999999 9999999999986421 1 568999999999999
Q ss_pred HHHHHhcc
Q psy18164 1131 VRYLENKS 1138 (1212)
Q Consensus 1131 ~~~~~~k~ 1138 (1212)
+++|+.|+
T Consensus 67 ~~PI~~k~ 74 (84)
T d1ud0a_ 67 CNPIITKL 74 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999987
|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Probab=93.08 E-value=0.025 Score=54.39 Aligned_cols=20 Identities=20% Similarity=0.272 Sum_probs=18.0
Q ss_pred CeEEEEEecCCceEEEEEEE
Q psy18164 229 PVHVMFYDMGAWSTTVSIVS 248 (1212)
Q Consensus 229 ~~~vlV~D~GggT~Dvsvv~ 248 (1212)
..++||||+||||||+++++
T Consensus 6 ~~~ilViDiGggTtDi~v~~ 25 (163)
T d2zgya2 6 LDSLLIIDLGGTTLDISQVM 25 (163)
T ss_dssp TCEEEEEEECSSCEEEEEEE
T ss_pred CCCEEEEECCCCcEEEEEEc
Confidence 45899999999999999975
|
| >d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.99 E-value=0.24 Score=46.05 Aligned_cols=64 Identities=8% Similarity=0.009 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCcc--ceEEEecCCCCCHHHHHHHHHHH-HHcCCCeeeeechhHHHHHhhc
Q psy18164 398 ELVAMLLHKAREYASVSAGQVI--NEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYG 464 (1212)
Q Consensus 398 el~a~~L~~lk~~a~~~~~~~i--~~~VItVP~~f~~~qR~al~~Aa-~~AGl~~~~li~EptAaAl~y~ 464 (1212)
+....++.++.. ..++... ..++||-|.+-....|+.+.+.+ +..++.-+.+...|..+++++|
T Consensus 74 d~~e~~~~~~~~---~~l~~~~~~~pvlltE~~~~~~~~r~~~~EilFE~~~vp~~~~~~~~~ls~ys~G 140 (140)
T d2fxua1 74 DDMEKIWHHTFY---NELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASG 140 (140)
T ss_dssp HHHHHHHHHHHH---TTSCCCGGGSCEEEEECTTCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHTT
T ss_pred HHHHHHHHHhhh---hhcccCCCCCcceeeccCCCCHHHHHHHHHHhhccCCCCEEEEEhhHHhHhhcCC
Confidence 445556666554 2334333 35999999999999999887765 5559999999999999987764
|
| >d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=92.53 E-value=0.034 Score=53.38 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=19.3
Q ss_pred CCeEEEEEecCCceEEEEEEEE
Q psy18164 228 NPVHVMFYDMGAWSTTVSIVSY 249 (1212)
Q Consensus 228 ~~~~vlV~D~GggT~Dvsvv~~ 249 (1212)
+++.+||+|+||||+|++++..
T Consensus 4 ~~g~~lviDIG~gTtDi~v~~~ 25 (161)
T d2fsja1 4 QPGYGVVIDVGSRTTDVLTINL 25 (161)
T ss_dssp CSSEEEEEEECSSCEEEEEEET
T ss_pred CCCcEEEEEcCcCeEEEEEEEC
Confidence 3568999999999999999875
|
| >d2fsja2 c.55.1.12 (A:1-164) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=90.84 E-value=0.1 Score=50.20 Aligned_cols=43 Identities=19% Similarity=-0.053 Sum_probs=31.7
Q ss_pred cEEEccCCCCCHHHHHHHHHHHHHc--------CC------ceEEEecchhHHHHHh
Q psy18164 174 EAVIIVPGYFNQIERQSMLKAGELA--------GL------KVLQLMNDYTAVALNY 216 (1212)
Q Consensus 174 ~~VitVPa~f~~~qr~~l~~Aa~~A--------Gl------~~~~li~EP~AAal~y 216 (1212)
.+|++.|..+...+++.+++....- |. ..+.+++||.+|.++.
T Consensus 103 ~lv~GLP~~~~~~~ke~~~~~l~~~~~~~~~~~g~~~~i~I~~v~V~pQg~ga~~~~ 159 (164)
T d2fsja2 103 VIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQGVGAALYL 159 (164)
T ss_dssp EEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEEETTHHHHHHH
T ss_pred EEEecCCHHHHHHHHHHHHHHhcCCCceEEeeCCeEEEEEEeEEEEecCCHHHHHHH
Confidence 4788899998888899998877521 11 3556788999988743
|
| >d1e4ft1 c.55.1.1 (T:7-199) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Probab=90.02 E-value=0.15 Score=50.48 Aligned_cols=33 Identities=9% Similarity=-0.122 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHHHcCCceEEEecchhHHHHHh
Q psy18164 184 NQIERQSMLKAGELAGLKVLQLMNDYTAVALNY 216 (1212)
Q Consensus 184 ~~~qr~~l~~Aa~~AGl~~~~li~EP~AAal~y 216 (1212)
+....+.+.++.+.+|+++..++.+|.|+|.+.
T Consensus 160 ~~~~i~nl~~~~~~~~l~v~~~~~~~~asa~a~ 192 (193)
T d1e4ft1 160 PLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGV 192 (193)
T ss_dssp EHHHHHHHHHHHHHHSCSCEEEEEHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCcchhEEEhHHhhhhcc
Confidence 356688899999999999999999999999753
|
| >d2i7na2 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Fumble-like domain: Pantothenate kinase 1, PANK1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.67 E-value=1.4 Score=43.62 Aligned_cols=47 Identities=21% Similarity=0.200 Sum_probs=33.4
Q ss_pred CccEEEEEcCCcCCHHHHHHHH----HHhC---CcccCCCCchhHHHhhHHHHH
Q psy18164 628 VISQVILVGAGTRVPKVQEKIT----KVVG---VELSKNLNTDEAAALGAVYKA 674 (1212)
Q Consensus 628 ~i~~ViLvGGssriP~Vq~~l~----~~fg---~~i~~~~n~deaVA~GAa~~a 674 (1212)
.++.|+++||.+.--.+++.+. +++. .++....|..-+.|+||.+.-
T Consensus 157 ~~k~iv~~Ggv~aN~~lr~~l~~~~~~~~~~~~i~~~Fp~~~~y~galGA~l~~ 210 (212)
T d2i7na2 157 NIDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLEL 210 (212)
T ss_dssp TCCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCHHHHHHHHHH
T ss_pred CCCEEEEECcHhhCHHHHHHHHHHHHHHHhhCCceEEecCChhhhHHHHHHHHh
Confidence 3678999999776655555543 3443 455667788899999998764
|
| >d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 3, Arp3 species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.83 E-value=0.47 Score=44.97 Aligned_cols=49 Identities=8% Similarity=-0.109 Sum_probs=39.6
Q ss_pred cceEEEecCCCCCHHHHHHHHHHH-HHcCCCeeeeechhHHHHHhhcccc
Q psy18164 419 INEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFK 467 (1212)
Q Consensus 419 i~~~VItVP~~f~~~qR~al~~Aa-~~AGl~~~~li~EptAaAl~y~~~~ 467 (1212)
-..++||-|.+.+..+|+.+.+.+ +..++.-+.+...+..++++++..+
T Consensus 105 ~~pvlltEp~~~~~~~Re~~~EilFE~~~vpa~~~~~~~~Lslya~g~~~ 154 (158)
T d1k8ka1 105 DHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSR 154 (158)
T ss_dssp GCCEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGST
T ss_pred CCceeeeecCCCCHHHHHHHHHHHhhhcCCCEEEEEchhhhhheeCCCCC
Confidence 346999999999999998776654 5569998899999999988876543
|
| >d1e4ft1 c.55.1.1 (T:7-199) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Probab=85.87 E-value=0.99 Score=44.08 Aligned_cols=31 Identities=10% Similarity=-0.109 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHcCCCeeeeechhHHHHHh
Q psy18164 432 QIERQSMLKAGELAGLKVLQLMNDYTAVALN 462 (1212)
Q Consensus 432 ~~qR~al~~Aa~~AGl~~~~li~EptAaAl~ 462 (1212)
...-+.+.++.+.+|+++..++.+|.|+|.+
T Consensus 161 ~~~i~nl~~~~~~~~l~v~~~~~~~~asa~a 191 (193)
T d1e4ft1 161 LKVYEMFYNFLQDTVKSPFQLKSSLVSTAEG 191 (193)
T ss_dssp HHHHHHHHHHHHHHSCSCEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcchhEEEhHHhhhhc
Confidence 4677889999999999999999999999965
|
| >d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Fumble-like domain: Type II pantothenate kinase, CoaW species: Staphylococcus aureus [TaxId: 1280]
Probab=83.69 E-value=0.85 Score=46.26 Aligned_cols=47 Identities=13% Similarity=0.183 Sum_probs=38.9
Q ss_pred CccEEEEEcCC-cCCHHHHHHHHHHhC---CcccCCCCchhHHHhhHHHHH
Q psy18164 628 VISQVILVGAG-TRVPKVQEKITKVVG---VELSKNLNTDEAAALGAVYKA 674 (1212)
Q Consensus 628 ~i~~ViLvGGs-sriP~Vq~~l~~~fg---~~i~~~~n~deaVA~GAa~~a 674 (1212)
++..|++.||. +..|.+++.|++++. .++....+++.+-|+|||+.+
T Consensus 216 ~~~~Iv~~GG~~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~aGaiGA~~L~ 266 (267)
T d2ewsa1 216 KTENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIGALYLE 266 (267)
T ss_dssp TCCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGGHHHHHHHHTC
T ss_pred CCCCEEEECChhhcCHHHHHHHHHHHHhCCCEEEECCCccHHHHHHHHHhc
Confidence 35689999986 669999999999984 466778889999999998864
|
| >d2fsja2 c.55.1.12 (A:1-164) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=83.61 E-value=0.17 Score=48.47 Aligned_cols=42 Identities=19% Similarity=-0.054 Sum_probs=29.0
Q ss_pred eEEEecCCCCCHHHHHHHHHHHHHc--------CC------CeeeeechhHHHHHh
Q psy18164 421 EAVIIVPGYFNQIERQSMLKAGELA--------GL------KVLQLMNDYTAVALN 462 (1212)
Q Consensus 421 ~~VItVP~~f~~~qR~al~~Aa~~A--------Gl------~~~~li~EptAaAl~ 462 (1212)
.+|+..|..+...+++++++....- |- +.+.++.||.+|.++
T Consensus 103 ~lv~GLP~~~~~~~ke~~~~~l~~~~~~~~~~~g~~~~i~I~~v~V~pQg~ga~~~ 158 (164)
T d2fsja2 103 VIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQGVGAALY 158 (164)
T ss_dssp EEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEEETTHHHHHH
T ss_pred EEEecCCHHHHHHHHHHHHHHhcCCCceEEeeCCeEEEEEEeEEEEecCCHHHHHH
Confidence 3678899998888999998876421 11 234467888877663
|