Psyllid ID: psy1847

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80------
Protein Sequence
MEDESLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVKAETPLENAAKPLPQVNSEKG
Secondary Structure (PSIPRED)
cccccccHHccccccEEEEccccHHHHHHHHcEEEEEEEEEccccHHHHHHHHHHccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHccccccEEEEEcccHHHHHHHHHHHHccccEccHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHccc
Coil and Loop (DISEMBL)
medeslftehfdkhpiiilkdikfTELQSMIDYMYEgevnisqdqLPSFLKAAASIQLKgltqnvkaetplenaakplpqvnsekg
Flexible Loop (DISEMBL)
medeslftehfdkhpiiilkDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVKaetplenaakplpqvnsekg
Low Complexity Region (SEG)
MEDESLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVKAETPLENAAKPLPQVNSEKG
Disordered region (IsUnstruct)
******FTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLK***************************
Disordered Region (DISOPRED)
**DESLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKG**************************
Disordered Region (DISEMBL)
MEDESLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVKAETPLENAAKPL********
Disordered Region (DISPRO)
*EDESLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLT************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEDESLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVKAETPLENAAKPLPQVNSEKG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	86	2.2.26 [Sep-21-2011]
Q9V5M6	963	Longitudinals lacking pro	no	N/A	0.697	0.062	0.65	1e-18
P42283	891	Longitudinals lacking pro	no	N/A	0.697	0.067	0.65	1e-18
Q867Z4	970	Longitudinals lacking pro	no	N/A	0.697	0.061	0.65	2e-18
P42284	549	Longitudinals lacking pro	no	N/A	0.697	0.109	0.65	2e-18
Q9V5M3	878	Longitudinals lacking pro	no	N/A	0.697	0.068	0.65	2e-18
Q7KQZ4	787	Longitudinals lacking pro	no	N/A	0.697	0.076	0.65	2e-17
P42282	813	Protein tramtrack, alpha	no	N/A	0.686	0.072	0.474	6e-14
Q8IN81	955	Sex determination protein	no	N/A	0.709	0.063	0.508	7e-14
Q7KRI2	127	Longitudinals lacking pro	no	N/A	0.720	0.488	0.522	1e-13
P17789	643	Protein tramtrack, beta i	no	N/A	0.686	0.091	0.474	1e-12

>sp|Q9V5M6|LOLA5_DROME Longitudinals lacking protein, isoforms J/P/Q/S/Z OS=Drosophila melanogaster GN=lola PE=1 SV=4

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 39/60 (65%), Positives = 50/60 (83%)

Query: 5   SLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQN 64
           +L  E +DKHPI ILKD+K+ EL++M+DYMY GEVNISQDQL + LKAA S+Q+KGL+ N
Sbjct: 59  TLLQEQYDKHPIFILKDVKYQELRAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSDN 118

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.
Drosophila melanogaster (taxid: 7227)

>sp|P42283|LOLA1_DROME Longitudinals lacking protein, isoform G OS=Drosophila melanogaster GN=lola PE=1 SV=2

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 39/60 (65%), Positives = 50/60 (83%)

Query: 5   SLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQN 64
           +L  E +DKHPI ILKD+K+ EL++M+DYMY GEVNISQDQL + LKAA S+Q+KGL+ N
Sbjct: 59  TLLQEQYDKHPIFILKDVKYQELRAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSDN 118

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|Q867Z4|LOLA4_DROME Longitudinals lacking protein, isoforms F/I/K/T OS=Drosophila melanogaster GN=lola PE=1 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 39/60 (65%), Positives = 50/60 (83%)

Query: 5   SLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQN 64
           +L  E +DKHPI ILKD+K+ EL++M+DYMY GEVNISQDQL + LKAA S+Q+KGL+ N
Sbjct: 59  TLLQEQYDKHPIFILKDVKYQELRAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSDN 118

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|P42284|LOLA2_DROME Longitudinals lacking protein, isoforms H/M/V OS=Drosophila melanogaster GN=lola PE=1 SV=2

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 39/60 (65%), Positives = 50/60 (83%)

Query: 5   SLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQN 64
           +L  E +DKHPI ILKD+K+ EL++M+DYMY GEVNISQDQL + LKAA S+Q+KGL+ N
Sbjct: 59  TLLQEQYDKHPIFILKDVKYQELRAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSDN 118

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|Q9V5M3|LOLA6_DROME Longitudinals lacking protein, isoforms N/O/W/X/Y OS=Drosophila melanogaster GN=lola PE=1 SV=3

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 39/60 (65%), Positives = 50/60 (83%)

Query: 5   SLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQN 64
           +L  E +DKHPI ILKD+K+ EL++M+DYMY GEVNISQDQL + LKAA S+Q+KGL+ N
Sbjct: 59  TLLQEQYDKHPIFILKDVKYQELRAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSDN 118

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|Q7KQZ4|LOLA3_DROME Longitudinals lacking protein, isoforms A/B/D/L OS=Drosophila melanogaster GN=lola PE=1 SV=1

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/60 (65%), Positives = 50/60 (83%)

Query: 5   SLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQN 64
           +L  E +DKHPI ILKD+K+ EL++M+DYMY GEVNISQDQL + LKAA S+Q+KGL+ N
Sbjct: 59  TLLQEQYDKHPIFILKDVKYQELRAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSDN 118

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|P42282|TTKA_DROME Protein tramtrack, alpha isoform OS=Drosophila melanogaster GN=ttk PE=1 SV=3

 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 50/59 (84%)

Query: 5   SLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQ 63
           +LF  H +KHPI+ILKD+ +++++S++D+MY GEV++ Q++L +FL+ A S+++KGLT+
Sbjct: 60  TLFVSHPEKHPIVILKDVPYSDMKSLLDFMYRGEVSVDQERLTAFLRVAESLRIKGLTE 118

Binds to a number of sites in the transcriptional regulatory region of ftz. Isoform alpha is required to repress genes that promote the R7 cell fate. Probable repressor of the transcription of the segmentation genes ftz, eve, h, odd, run, and en. May bind to the region 5'-AGGG[CT]GG-3'. Degradation of ttk is directed by binding of sinah or sina, via the adapter molecule phyl which binds to the BTB domain of ttk.

Drosophila melanogaster (taxid: 7227)

>sp|Q8IN81|FRU_DROME Sex determination protein fruitless OS=Drosophila melanogaster GN=fru PE=1 SV=1

 Score = 75.9 bits (185), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 31/61 (50%), Positives = 49/61 (80%)

Query: 4   ESLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQ 63
           E++F ++   HPII LKD++++E++S++D+MY+GEVN+ Q  LP FLK A S+Q++GLT 
Sbjct: 157 ETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNVGQSSLPMFLKTAESLQVRGLTD 216

Query: 64  N 64
           N
Sbjct: 217 N 217

Probably acts as a transcriptional regulator. Part of the somatic sex determination hierarchy; sex determination genes transformer (tra) and transformer-2 (tra-2) switch fru splicing from the male-specific pattern to the female-specific pattern through activation of the female-specific fru 5'-splice site. Vital for the development of males and females. Controls the development of the male specific abdominal muscle of Lawrence. Plays a role in male courtship behavior and sexual orientation. Enhances male-specific expression of takeout in brain-associated fat body.

Drosophila melanogaster (taxid: 7227)

>sp|Q7KRI2|LOLAL_DROME Longitudinals lacking protein-like OS=Drosophila melanogaster GN=lolal PE=1 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 51/67 (76%), Gaps = 5/67 (7%)

Query: 4   ESLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQ 63
           ++L  E+  KHPIIILKD+ +  LQ+++++MY GEVN+SQ+QLP+FLK A  +++KGL  
Sbjct: 59  KALLEENPSKHPIIILKDVSYIHLQAILEFMYAGEVNVSQEQLPAFLKTADRLKVKGL-- 116

Query: 64  NVKAETP 70
              AETP
Sbjct: 117 ---AETP 120

Required, together with Trl, for maintaining the repressed state of target genes including homeotic genes Scr and Ubx. May also be involved in the activation of homeotic genes. Binds to a DNA Polycomb response element (PRE) at the bithorax complex. Also binds to polytene chromosomes at several hundred sites, many of which are shared with Trl and ph-p. Required during embryonic development.

Drosophila melanogaster (taxid: 7227)

>sp|P17789|TTKB_DROME Protein tramtrack, beta isoform OS=Drosophila melanogaster GN=ttk PE=1 SV=2

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 50/59 (84%)

Query: 5   SLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQ 63
           +LF  H +KHPI+ILKD+ +++++S++D+MY GEV++ Q++L +FL+ A S+++KGLT+
Sbjct: 60  TLFVSHPEKHPIVILKDVPYSDMKSLLDFMYRGEVSVDQERLTAFLRVAESLRIKGLTE 118

Binds to a number of sites in the transcriptional regulatory region of ftz. Isoform beta is required to repress inappropriate segmentation gene transcription and repress genes incompatible with development of photoreceptor cell fates. Probable repressor of the transcription of the segmentation genes ftz, eve, h, odd, run, and en. Inhibits Trl-dependent activation of eve. May bind to the region AGGGC/TGG. Degradation of ttk is directed by binding of sinah or sina, via the adapter molecule phyl which binds to the BTB domain of ttk. A second method of degradation exists that is phyl-independent, this is mediated by recognition of motifs in the C-terminus of ttk.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	86
255522799	468	longitudinals lacking isoform 3 [Triboli	0.744	0.136	0.671	2e-19
255522801	396	longitudinals lacking isoform 4 [Triboli	0.744	0.161	0.671	4e-19
255522795	411	longitudinals lacking isoform 1 [Triboli	0.744	0.155	0.671	4e-19
255522811	385	longitudinals lacking isoform 9 [Triboli	0.744	0.166	0.671	4e-19
255522803	402	longitudinals lacking isoform 5 [Triboli	0.744	0.159	0.671	4e-19
255522807	399	longitudinals lacking isoform 7 [Triboli	0.744	0.160	0.671	4e-19
255522809	444	longitudinals lacking isoform 8 [Triboli	0.744	0.144	0.671	4e-19
255522797	482	longitudinals lacking isoform 2 [Triboli	0.744	0.132	0.671	4e-19
255522805	405	longitudinals lacking isoform 6 [Triboli	0.744	0.158	0.671	6e-19
242018527	303	protein tramtrack, beta isoform, putativ	0.686	0.194	0.694	6e-19

>gi|255522799|ref|NP_001157312.1| longitudinals lacking isoform 3 [Tribolium castaneum]

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/64 (67%), Positives = 54/64 (84%)

Query: 4   ESLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQ 63
           ESL + H+DKHPI+ILKD+KF EL++M+DYMY GEVNISQDQL + LKAA S+Q+KGL+ 
Sbjct: 58  ESLLSRHYDKHPILILKDVKFQELKAMMDYMYRGEVNISQDQLGALLKAAESLQIKGLSD 117

Query: 64  NVKA 67
           N K 
Sbjct: 118 NRKG 121

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|255522801|ref|NP_001157313.1| longitudinals lacking isoform 4 [Tribolium castaneum]

 Score = 99.0 bits (245), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/64 (67%), Positives = 54/64 (84%)

Query: 4   ESLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQ 63
           ESL + H+DKHPI+ILKD+KF EL++M+DYMY GEVNISQDQL + LKAA S+Q+KGL+ 
Sbjct: 58  ESLLSRHYDKHPILILKDVKFQELKAMMDYMYRGEVNISQDQLGALLKAAESLQIKGLSD 117

Query: 64  NVKA 67
           N K 
Sbjct: 118 NRKG 121

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|255522795|ref|NP_001157310.1| longitudinals lacking isoform 1 [Tribolium castaneum]

 Score = 99.0 bits (245), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/64 (67%), Positives = 54/64 (84%)

Query: 4   ESLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQ 63
           ESL + H+DKHPI+ILKD+KF EL++M+DYMY GEVNISQDQL + LKAA S+Q+KGL+ 
Sbjct: 58  ESLLSRHYDKHPILILKDVKFQELKAMMDYMYRGEVNISQDQLGALLKAAESLQIKGLSD 117

Query: 64  NVKA 67
           N K 
Sbjct: 118 NRKG 121

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|255522811|ref|NP_001157318.1| longitudinals lacking isoform 9 [Tribolium castaneum]

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/64 (67%), Positives = 54/64 (84%)

Query: 4   ESLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQ 63
           ESL + H+DKHPI+ILKD+KF EL++M+DYMY GEVNISQDQL + LKAA S+Q+KGL+ 
Sbjct: 58  ESLLSRHYDKHPILILKDVKFQELKAMMDYMYRGEVNISQDQLGALLKAAESLQIKGLSD 117

Query: 64  NVKA 67
           N K 
Sbjct: 118 NRKG 121

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|255522803|ref|NP_001157314.1| longitudinals lacking isoform 5 [Tribolium castaneum]

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/64 (67%), Positives = 54/64 (84%)

Query: 4   ESLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQ 63
           ESL + H+DKHPI+ILKD+KF EL++M+DYMY GEVNISQDQL + LKAA S+Q+KGL+ 
Sbjct: 58  ESLLSRHYDKHPILILKDVKFQELKAMMDYMYRGEVNISQDQLGALLKAAESLQIKGLSD 117

Query: 64  NVKA 67
           N K 
Sbjct: 118 NRKG 121

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|255522807|ref|NP_001157316.1| longitudinals lacking isoform 7 [Tribolium castaneum]

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/64 (67%), Positives = 54/64 (84%)

Query: 4   ESLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQ 63
           ESL + H+DKHPI+ILKD+KF EL++M+DYMY GEVNISQDQL + LKAA S+Q+KGL+ 
Sbjct: 58  ESLLSRHYDKHPILILKDVKFQELKAMMDYMYRGEVNISQDQLGALLKAAESLQIKGLSD 117

Query: 64  NVKA 67
           N K 
Sbjct: 118 NRKG 121

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|255522809|ref|NP_001157317.1| longitudinals lacking isoform 8 [Tribolium castaneum]

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/64 (67%), Positives = 54/64 (84%)

Query: 4   ESLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQ 63
           ESL + H+DKHPI+ILKD+KF EL++M+DYMY GEVNISQDQL + LKAA S+Q+KGL+ 
Sbjct: 58  ESLLSRHYDKHPILILKDVKFQELKAMMDYMYRGEVNISQDQLGALLKAAESLQIKGLSD 117

Query: 64  NVKA 67
           N K 
Sbjct: 118 NRKG 121

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|255522797|ref|NP_001157311.1| longitudinals lacking isoform 2 [Tribolium castaneum]

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/64 (67%), Positives = 54/64 (84%)

Query: 4   ESLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQ 63
           ESL + H+DKHPI+ILKD+KF EL++M+DYMY GEVNISQDQL + LKAA S+Q+KGL+ 
Sbjct: 58  ESLLSRHYDKHPILILKDVKFQELKAMMDYMYRGEVNISQDQLGALLKAAESLQIKGLSD 117

Query: 64  NVKA 67
           N K 
Sbjct: 118 NRKG 121

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|255522805|ref|NP_001157315.1| longitudinals lacking isoform 6 [Tribolium castaneum]

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 43/64 (67%), Positives = 54/64 (84%)

Query: 4   ESLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQ 63
           ESL + H+DKHPI+ILKD+KF EL++M+DYMY GEVNISQDQL + LKAA S+Q+KGL+ 
Sbjct: 58  ESLLSRHYDKHPILILKDVKFQELKAMMDYMYRGEVNISQDQLGALLKAAESLQIKGLSD 117

Query: 64  NVKA 67
           N K 
Sbjct: 118 NRKG 121

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242018527|ref|XP_002429726.1| protein tramtrack, beta isoform, putative [Pediculus humanus corporis] gi|212514732|gb|EEB16988.1| protein tramtrack, beta isoform, putative [Pediculus humanus corporis]

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 41/59 (69%), Positives = 54/59 (91%)

Query: 4   ESLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLT 62
           E+L + H+DKHPI+ILKD+KF+EL++M+DYMY GEVNISQDQL +FLKAA S+Q+KGL+
Sbjct: 57  ETLLSRHYDKHPILILKDVKFSELKAMMDYMYRGEVNISQDQLGTFLKAAESLQIKGLS 115

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	86
FB|FBgn0005630	970	lola "longitudinals lacking" [	0.697	0.061	0.65	4e-16
FB|FBgn0022238	127	lolal "lola like" [Drosophila	0.720	0.488	0.522	7.9e-14
FB|FBgn0004652	955	fru "fruitless" [Drosophila me	0.709	0.063	0.508	2.4e-13
FB|FBgn0003870	813	ttk "tramtrack" [Drosophila me	0.813	0.086	0.450	4e-13
FB|FBgn0263108	798	BtbVII "BTB-protein-VII" [Dros	0.697	0.075	0.5	2.2e-12
FB|FBgn0264981	1089	mamo "maternal gene required f	0.965	0.076	0.397	3.3e-12
FB|FBgn0029822	553	CG12236 [Drosophila melanogast	0.767	0.119	0.462	2.8e-10
FB|FBgn0002781	610	mod(mdg4) "modifier of mdg4" [	0.930	0.131	0.373	3.3e-10
FB|FBgn0030710	514	CG8924 [Drosophila melanogaste	0.883	0.147	0.402	6.8e-10
FB|FBgn0025525	1067	bab2 "bric a brac 2" [Drosophi	0.860	0.069	0.368	9.1e-10

FB|FBgn0005630 lola "longitudinals lacking" [Drosophila melanogaster (taxid:7227)]

 Score = 213 (80.0 bits), Expect = 4.0e-16, P = 4.0e-16
 Identities = 39/60 (65%), Positives = 50/60 (83%)

Query:     5 SLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQN 64
             +L  E +DKHPI ILKD+K+ EL++M+DYMY GEVNISQDQL + LKAA S+Q+KGL+ N
Sbjct:    59 TLLQEQYDKHPIFILKDVKYQELRAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSDN 118

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0007411 "axon guidance" evidence=IGI;NAS;IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0007409 "axonogenesis" evidence=IMP

GO:0005634 "nucleus" evidence=NAS;IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0016199 "axon midline choice point recognition" evidence=IGI;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0019730 "antimicrobial humoral response" evidence=IMP

GO:0045476 "nurse cell apoptotic process" evidence=IMP

GO:0045467 "R7 cell development" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0007464 "R3/R4 cell fate commitment" evidence=IMP

GO:0048854 "brain morphogenesis" evidence=IMP

GO:0031987 "locomotion involved in locomotory behavior" evidence=IMP

GO:0001964 "startle response" evidence=IMP

GO:0002121 "inter-male aggressive behavior" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

FB|FBgn0022238 lolal "lola like" [Drosophila melanogaster (taxid:7227)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 35/67 (52%), Positives = 51/67 (76%)

Query:     4 ESLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQ 63
             ++L  E+  KHPIIILKD+ +  LQ+++++MY GEVN+SQ+QLP+FLK A  +++KGL  
Sbjct:    59 KALLEENPSKHPIIILKDVSYIHLQAILEFMYAGEVNVSQEQLPAFLKTADRLKVKGL-- 116

Query:    64 NVKAETP 70
                AETP
Sbjct:   117 ---AETP 120

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0006342 "chromatin silencing" evidence=IMP

GO:0016458 "gene silencing" evidence=IMP

GO:0031519 "PcG protein complex" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0007426 "tracheal outgrowth, open tracheal system" evidence=IMP

GO:0007435 "salivary gland morphogenesis" evidence=IMP

FB|FBgn0004652 fru "fruitless" [Drosophila melanogaster (taxid:7227)]

 Score = 187 (70.9 bits), Expect = 2.4e-13, P = 2.4e-13
 Identities = 31/61 (50%), Positives = 49/61 (80%)

Query:     4 ESLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQ 63
             E++F ++   HPII LKD++++E++S++D+MY+GEVN+ Q  LP FLK A S+Q++GLT 
Sbjct:   157 ETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNVGQSSLPMFLKTAESLQVRGLTD 216

Query:    64 N 64
             N
Sbjct:   217 N 217

GO:0016545 "male courtship behavior, veined wing vibration" evidence=IMP

GO:0008049 "male courtship behavior" evidence=NAS;IMP;TAS

GO:0007618 "mating" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS;TAS

GO:0045433 "male courtship behavior, veined wing generated song production" evidence=IMP;TAS

GO:0007517 "muscle organ development" evidence=IMP

GO:0007530 "sex determination" evidence=IMP;TAS

GO:0007275 "multicellular organismal development" evidence=IMP

GO:0005634 "nucleus" evidence=NAS

GO:0007617 "mating behavior" evidence=IMP

GO:0016543 "male courtship behavior, orientation prior to leg tapping and wing vibration" evidence=NAS

GO:0007620 "copulation" evidence=NAS;TAS

GO:0007417 "central nervous system development" evidence=IMP;TAS

GO:0046661 "male sex differentiation" evidence=TAS

GO:0048047 "mating behavior, sex discrimination" evidence=IGI;IMP;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0002118 "aggressive behavior" evidence=IMP

GO:0016199 "axon midline choice point recognition" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

FB|FBgn0003870 ttk "tramtrack" [Drosophila melanogaster (taxid:7227)]

 Score = 184 (69.8 bits), Expect = 4.0e-13, P = 4.0e-13
 Identities = 32/71 (45%), Positives = 55/71 (77%)

Query:     5 SLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQN 64
             +LF  H +KHPI+ILKD+ +++++S++D+MY GEV++ Q++L +FL+ A S+++KGLT+ 
Sbjct:    60 TLFVSHPEKHPIVILKDVPYSDMKSLLDFMYRGEVSVDQERLTAFLRVAESLRIKGLTE- 118

Query:    65 VKAETPLENAA 75
             V  + P   AA
Sbjct:   119 VNDDKPSPAAA 129

GO:0000978 "RNA polymerase II core promoter proximal region sequence-specific DNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=NAS;IDA

GO:0007422 "peripheral nervous system development" evidence=TAS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0000980 "RNA polymerase II distal enhancer sequence-specific DNA binding" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0045467 "R7 cell development" evidence=IMP;TAS

GO:0005700 "polytene chromosome" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0046843 "dorsal appendage formation" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0001709 "cell fate determination" evidence=TAS

GO:0017053 "transcriptional repressor complex" evidence=IPI

GO:0003682 "chromatin binding" evidence=IDA

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0030707 "ovarian follicle cell development" evidence=IMP

GO:0007298 "border follicle cell migration" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0048666 "neuron development" evidence=IMP

GO:0035001 "dorsal trunk growth, open tracheal system" evidence=IMP

GO:0060446 "branching involved in open tracheal system development" evidence=IMP

GO:0016476 "regulation of embryonic cell shape" evidence=IMP

GO:0035151 "regulation of tube size, open tracheal system" evidence=IMP

GO:0040003 "chitin-based cuticle development" evidence=IMP

GO:0035147 "branch fusion, open tracheal system" evidence=IMP

GO:0007426 "tracheal outgrowth, open tracheal system" evidence=IMP

GO:0001964 "startle response" evidence=IMP

GO:0031987 "locomotion involved in locomotory behavior" evidence=IMP

GO:0048854 "brain morphogenesis" evidence=IMP

GO:0002121 "inter-male aggressive behavior" evidence=IMP

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0042675 "compound eye cone cell differentiation" evidence=IMP

GO:0048053 "R1/R6 development" evidence=IMP

GO:0048750 "compound eye corneal lens morphogenesis" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

FB|FBgn0263108 BtbVII "BTB-protein-VII" [Drosophila melanogaster (taxid:7227)]

 Score = 177 (67.4 bits), Expect = 2.2e-12, P = 2.2e-12
 Identities = 30/60 (50%), Positives = 49/60 (81%)

Query:     4 ESLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQ 63
             ++LFT +  +HPI+ILKD+++ +L++M+D+MY GEVN+SQ+QLP  LK A  +++KGL +
Sbjct:    57 QALFTTNPCQHPIVILKDVQYDDLKTMVDFMYYGEVNVSQEQLPHILKTAEMLKIKGLAE 116

GO:0003677 "DNA binding" evidence=IEA;NAS

FB|FBgn0264981 mamo "maternal gene required for meiosis" [Drosophila melanogaster (taxid:7227)]

 Score = 177 (67.4 bits), Expect = 3.3e-12, P = 3.3e-12
 Identities = 33/83 (39%), Positives = 54/83 (65%)

Query:     4 ESLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQ 63
             +SLF EH + H I+ILKD++F ELQ+++++MY+GEVN+   QL + LK A S+++KGL +
Sbjct:    58 QSLFLEHPEGHLIVILKDVRFAELQTLVEFMYKGEVNVQYCQLSALLKTAESLKVKGLAE 117

Query:    64 NVKAETPLENAAKPLPQVNSEKG 86
                  T L    +   ++  + G
Sbjct:   118 MTNQNTTLREPEREPDRLRPQGG 140

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0035041 "sperm chromatin decondensation" evidence=IMP

GO:0007143 "female meiosis" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0007276 "gamete generation" evidence=IMP

FB|FBgn0029822 CG12236 [Drosophila melanogaster (taxid:7227)]

 Score = 155 (59.6 bits), Expect = 2.8e-10, P = 2.8e-10
 Identities = 31/67 (46%), Positives = 46/67 (68%)

Query:     4 ESLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQ 63
             + +F E+   HP+II K IKF +L S+I++MY+GEVN+ Q+ L SFL+ A  + ++GLT 
Sbjct:    58 KEIFKENPHPHPVIIFKFIKFEDLNSIIEFMYQGEVNVQQEALQSFLQTAELLAVQGLTA 117

Query:    64 NVKAETP 70
               K E P
Sbjct:   118 EEK-EKP 123

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

FB|FBgn0002781 mod(mdg4) "modifier of mdg4" [Drosophila melanogaster (taxid:7227)]

 Score = 155 (59.6 bits), Expect = 3.3e-10, P = 3.3e-10
 Identities = 31/83 (37%), Positives = 51/83 (61%)

Query:     6 LFTEH-FDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQN 64
             +FT+   + H I+ L ++  + L+ +I +MY GEVN+ QD LP+F+  A S+Q+KGLT N
Sbjct:    60 MFTQMPSNTHAIVFLNNVSHSALKDLIQFMYCGEVNVKQDALPAFISTAESLQIKGLTDN 119

Query:    65 VKAETPLENAAKP--LPQVNSEK 85
               A  P + ++ P   P V  ++
Sbjct:   120 DPAPQPPQESSPPPAAPHVQQQQ 142

GO:0005515 "protein binding" evidence=IPI

GO:0003682 "chromatin binding" evidence=IMP

GO:0000785 "chromatin" evidence=IMP

GO:0001672 "regulation of chromatin assembly or disassembly" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0042981 "regulation of apoptotic process" evidence=IMP

GO:0006917 "induction of apoptosis" evidence=IMP;TAS

GO:0005634 "nucleus" evidence=IDA;NAS

GO:0005700 "polytene chromosome" evidence=IDA

GO:0008354 "germ cell migration" evidence=IGI;IMP

GO:0008195 "phosphatidate phosphatase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0006997 "nucleus organization" evidence=TAS

GO:0006325 "chromatin organization" evidence=NAS

GO:0000794 "condensed nuclear chromosome" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0007060 "male meiosis chromosome segregation" evidence=IMP

GO:0007141 "male meiosis I" evidence=IMP

FB|FBgn0030710 CG8924 [Drosophila melanogaster (taxid:7227)]

 Score = 151 (58.2 bits), Expect = 6.8e-10, P = 6.8e-10
 Identities = 33/82 (40%), Positives = 53/82 (64%)

Query:     4 ESLFTEHFDKHPIIIL-KDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLT 62
             E++  EH  KHP+IIL ++IK  E+Q+++D+MY+GEVN++Q  L   L+ A  +Q++GL 
Sbjct:    59 EAILAEHPCKHPVIILPREIKLWEIQALVDFMYKGEVNVTQAGLGQLLRCAEQLQIRGL- 117

Query:    63 QNVKAETPLENAAKPLPQVNSE 84
                 +E P+    K L Q + E
Sbjct:   118 --YGSEAPINY--KKLQQASLE 135

GO:0003677 "DNA binding" evidence=IEA;NAS

FB|FBgn0025525 bab2 "bric a brac 2" [Drosophila melanogaster (taxid:7227)]

 Score = 154 (59.3 bits), Expect = 9.1e-10, P = 9.1e-10
 Identities = 28/76 (36%), Positives = 55/76 (72%)

Query:     4 ESLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQ 63
             ++LF ++  +HPIII++D+ +++L++++++MY+GE+N+ QDQ+   LK A +++++GL +
Sbjct:   249 QALFYDNPCQHPIIIMRDVSWSDLKALVEFMYKGEINVCQDQINPLLKVAETLKIRGLAE 308

Query:    64 NVKAETPLENAAKPLP 79
              V A    E  A  LP
Sbjct:   309 -VSAGRG-EGGASALP 322

GO:0005515 "protein binding" evidence=IPI

GO:0006351 "transcription, DNA-dependent" evidence=IEP

GO:0008585 "female gonad development" evidence=IGI;IMP

GO:0005634 "nucleus" evidence=IDA;TAS

GO:0007455 "eye-antennal disc morphogenesis" evidence=ISS

GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IGI;IMP

GO:0003677 "DNA binding" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005700 "polytene chromosome" evidence=IDA

GO:0003680 "AT DNA binding" evidence=IDA

GO:0005701 "polytene chromosome chromocenter" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	86
pfam00651	101	pfam00651, BTB, BTB/POZ domain	4e-09
smart00225	97	smart00225, BTB, Broad-Complex, Tramtrack and Bric	4e-09

>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain

 Score = 48.8 bits (117), Expect = 4e-09
 Identities = 13/59 (22%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 5  SLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQ 63
          +LFT + +    I L+D+   + +++++++Y G++ I+++ +   L  A  +Q+  L  
Sbjct: 38 ALFTGNKEVE--ITLEDVSPEDFEALLEFIYTGKLEITEENVDDLLALADKLQIPALID 94

The BTB (for BR-C, ttk and bab) or POZ (for Pox virus and Zinc finger) domain is present near the N-terminus of a fraction of zinc finger (pfam00096) proteins and in proteins that contain the pfam01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT. The POZ or BTB domain is also known as BR-C/Ttk or ZiN. Length = 101

>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac

 Score = 48.5 bits (116), Expect = 4e-09
 Identities = 13/62 (20%), Positives = 36/62 (58%), Gaps = 2/62 (3%)

Query: 4  ESLFTEHF--DKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGL 61
          ++LF+  F       I L D+   + +++++++Y G++++ ++ +   L+ A  +Q+ GL
Sbjct: 26 KALFSSDFKESDKSEIYLDDVSPEDFRALLNFLYTGKLDLPEENVEELLELADYLQIPGL 85

Query: 62 TQ 63
           +
Sbjct: 86 VE 87

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures. Length = 97

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	86
PHA02790	480	Kelch-like protein; Provisional	99.71
KOG4441|consensus	571		99.64
PHA02713	557	hypothetical protein; Provisional	99.58
PHA03098	534	kelch-like protein; Provisional	99.48
smart00225	90	BTB Broad-Complex, Tramtrack and Bric a brac. Doma	99.4
PF00651	111	BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (	99.35
KOG4682|consensus	488		98.59
KOG4350|consensus	620		98.36
KOG2075|consensus	521		98.1
KOG2716|consensus	230		97.51
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	97.23
smart00512	104	Skp1 Found in Skp1 protein family. Family of Skp1	97.01
KOG1724|consensus	162		96.96
PF11822	317	DUF3342: Domain of unknown function (DUF3342); Int	96.87
KOG4591|consensus	280		96.83
KOG0783|consensus	1267		96.79
KOG3473|consensus	112		96.63
KOG1665|consensus	302		95.49
KOG0511|consensus	516		94.73
PF03931	62	Skp1_POZ: Skp1 family, tetramerisation domain; Int	93.72
KOG2714|consensus	465		92.55
PF01466	78	Skp1: Skp1 family, dimerisation domain; InterPro:	92.21
KOG3840|consensus	438		86.04
COG5201	158	SKP1 SCF ubiquitin ligase, SKP1 component [Posttra	82.76

>PHA02790 Kelch-like protein; Provisional

Probab=99.71  E-value=1.5e-17  Score=125.37  Aligned_cols=71  Identities=17%  Similarity=0.219  Sum_probs=62.9

Q ss_pred             chhhhcCC--CCCCCCeEEe--cCCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhh----hcCCCCCC
Q psy1847           2 EDESLFTE--HFDKHPIIIL--KDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNV----KAETPLEN   73 (86)
Q Consensus         2 YFr~mF~~--~e~~~~~V~L--~~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c----~~~~~~~~   73 (86)
                      |||+||++  +|+++ .|.+  .|+++++|+.||+|+|||++.|+.+||++++.||++||++.++++|    .+.++.+|
T Consensus        46 YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~N  124 (480)
T PHA02790         46 YFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVYIDSHNVVNLLRASILTSVEFIIYTCINFILRDFRKEY  124 (480)
T ss_pred             HHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEEEecccHHHHHHHHHHhChHHHHHHHHHHHHhhCCcch
Confidence            99999998  56644 4554  4999999999999999999999999999999999999999999999    55666666

>KOG4441|consensus

Probab=99.64  E-value=2.1e-16  Score=121.84  Aligned_cols=66  Identities=26%  Similarity=0.420  Sum_probs=64.0

Q ss_pred             chhhhcCC--CCCCCCeEEecCCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhhhc
Q psy1847           2 EDESLFTE--HFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVKA   67 (86)
Q Consensus         2 YFr~mF~~--~e~~~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c~~   67 (86)
                      |||+||++  +|+.+.+|.|.++++.+++.+|+|+|||++.|+.+||++|+.+|++|||+.++++|++
T Consensus        61 YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i~i~~~nVq~ll~aA~~lQi~~v~~~C~~  128 (571)
T KOG4441|consen   61 YFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGKLEISEDNVQELLEAASLLQIPEVVDACCE  128 (571)
T ss_pred             HHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcceEEechHhHHHHHHHHHHhhhHHHHHHHHH
Confidence            99999998  7899999999999999999999999999999999999999999999999999999954

>PHA02713 hypothetical protein; Provisional

Probab=99.58  E-value=1.4e-15  Score=116.79  Aligned_cols=65  Identities=18%  Similarity=0.279  Sum_probs=59.4

Q ss_pred             CchhhhcCC--CCC-CCCeEEecCCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhhhc
Q psy1847           1 MEDESLFTE--HFD-KHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVKA   67 (86)
Q Consensus         1 ~YFr~mF~~--~e~-~~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c~~   67 (86)
                      .|||+||++  +|. .+.+|.|+++++++|+.||+|+|||+  |+.+|++++|.||++||++.++++|++
T Consensus        50 ~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~~--i~~~nv~~ll~aA~~lqi~~l~~~C~~  117 (557)
T PHA02713         50 KYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNRH--ISSMNVIDVLKCADYLLIDDLVTDCES  117 (557)
T ss_pred             HHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHCHHHHHHHHHH
Confidence            399999998  554 47889999999999999999999997  789999999999999999999999943

>PHA03098 kelch-like protein; Provisional

Probab=99.48  E-value=4.3e-14  Score=106.80  Aligned_cols=70  Identities=20%  Similarity=0.331  Sum_probs=62.9

Q ss_pred             chhhhcCCCCCCCCeEEecCCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhhhc----CCCCCC
Q psy1847           2 EDESLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVKA----ETPLEN   73 (86)
Q Consensus         2 YFr~mF~~~e~~~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c~~----~~~~~~   73 (86)
                      |||+||++... +..|.|++ ++++|+.+|+|+|||++.++.+++.+++.+|++||++.|++.|..    .++.+|
T Consensus        36 yF~~mf~~~~~-~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~~~n  109 (534)
T PHA03098         36 YFKKMFKNNFK-ENEINLNI-DYDSFNEVIKYIYTGKINITSNNVKDILSIANYLIIDFLINLCINYIIKIIDDNN  109 (534)
T ss_pred             HHHHHHhCCCC-CceEEecC-CHHHHHHHHHHhcCCceEEcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHhH
Confidence            99999998544 78899999 999999999999999999999999999999999999999999944    455555

>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac

Probab=99.40  E-value=6.4e-13  Score=76.97  Aligned_cols=65  Identities=22%  Similarity=0.540  Sum_probs=60.0

Q ss_pred             chhhhcCCCCC--CCCeEEecCCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhhh
Q psy1847           2 EDESLFTEHFD--KHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVK   66 (86)
Q Consensus         2 YFr~mF~~~e~--~~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c~   66 (86)
                      ||+.||.+...  ....+.++++++.+++.+++|+|+|++.++.+++..++.+|.+|+++++.+.|.
T Consensus        24 ~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~~~~~l~~~c~   90 (90)
T smart00225       24 YFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEELLELADYLQIPGLVELCE   90 (90)
T ss_pred             HHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHHCcHHHHhhhC
Confidence            89999998433  578899999999999999999999999999999999999999999999999984

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.

>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins

Probab=99.35  E-value=2.9e-12  Score=78.27  Aligned_cols=66  Identities=26%  Similarity=0.530  Sum_probs=59.9

Q ss_pred             chhhhcCCC-CCCC--CeEEecCCCHHHHHHHHHhhhcceEEec-CCcHHHHHHHHHhcCcccHHhhhhc
Q psy1847           2 EDESLFTEH-FDKH--PIIILKDIKFTELQSMIDYMYEGEVNIS-QDQLPSFLKAAASIQLKGLTQNVKA   67 (86)
Q Consensus         2 YFr~mF~~~-e~~~--~~V~L~~vs~~~l~~lL~f~YTG~l~i~-~~~v~~ll~aA~~Lqi~~l~~~c~~   67 (86)
                      ||+.||... ....  ..|.++++++++++.+++|+|+|++.++ .+++.+++.+|+.|+++.|++.|..
T Consensus        36 ~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~ll~lA~~~~~~~L~~~~~~  105 (111)
T PF00651_consen   36 YFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEINSDENVEELLELADKLQIPELKKACEK  105 (111)
T ss_dssp             HHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-TTTHHHHHHHHHHTTBHHHHHHHHH
T ss_pred             hhhhcccccccccccccccccccccccccccccccccCCcccCCHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            899999986 3333  4688999999999999999999999998 9999999999999999999999965

The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....

>KOG4682|consensus

Probab=98.59  E-value=5.5e-08  Score=73.04  Aligned_cols=74  Identities=28%  Similarity=0.338  Sum_probs=66.9

Q ss_pred             chhhhcCC--CCCCCCeEEe----cCCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhh----hcCCCC
Q psy1847           2 EDESLFTE--HFDKHPIIIL----KDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNV----KAETPL   71 (86)
Q Consensus         2 YFr~mF~~--~e~~~~~V~L----~~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c----~~~~~~   71 (86)
                      ||++||..  +|++...|.|    +.|+..++...+.=+|..++.|..+.|..++++|.+||++++.+.|    .++++.
T Consensus        93 yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l~dv~gvlAaA~~lqldgl~qrC~evMie~lsp  172 (488)
T KOG4682|consen   93 YFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIKLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSP  172 (488)
T ss_pred             HHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheeccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCh
Confidence            99999999  7888777665    5699999999999999999999999999999999999999999999    567777


Q ss_pred             CCCC
Q psy1847          72 ENAA   75 (86)
Q Consensus        72 ~~~~   75 (86)
                      +||.
T Consensus       173 kta~  176 (488)
T KOG4682|consen  173 KTAC  176 (488)
T ss_pred             hhhh
Confidence            7764

>KOG4350|consensus

Probab=98.36  E-value=3.6e-07  Score=69.22  Aligned_cols=64  Identities=17%  Similarity=0.360  Sum_probs=54.7

Q ss_pred             chhhhcCC--CCCCCCeEEecCCCHHHHHHHHHhhhcceEEecC---CcHHHHHHHHHhcCcccHHhhh
Q psy1847           2 EDESLFTE--HFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQ---DQLPSFLKAAASIQLKGLTQNV   65 (86)
Q Consensus         2 YFr~mF~~--~e~~~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~---~~v~~ll~aA~~Lqi~~l~~~c   65 (86)
                      |||+|+-.  .|+.+..|.|++-..++|+.+|.|||||++.++.   +-+.+.|..|..+++..|-.+-
T Consensus        69 yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~~l~~~~ed~lld~LslAh~Ygf~~Le~ai  137 (620)
T KOG4350|consen   69 YFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKIDLAGVEEDILLDYLSLAHRYGFIQLETAI  137 (620)
T ss_pred             HHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcceecccchHHHHHHHHHHHHhcCcHHHHHHH
Confidence            99999877  7888999999999999999999999999997754   5567788888888887776554

>KOG2075|consensus

Probab=98.10  E-value=1.5e-06  Score=66.43  Aligned_cols=78  Identities=22%  Similarity=0.279  Sum_probs=68.0

Q ss_pred             hhhhcCC--CCCCCCeEEecCCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhh----hcCCCCCCCCC
Q psy1847           3 DESLFTE--HFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNV----KAETPLENAAK   76 (86)
Q Consensus         3 Fr~mF~~--~e~~~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c----~~~~~~~~~~~   76 (86)
                      |.+||..  .+....+|.+++|.+.++..+|.|+|+-++.+..+++-.++.+|+.+-++.|.+.|    ..++-..|+=.
T Consensus       145 FdaMf~g~~a~~~s~ei~lpdvepaaFl~~L~flYsdev~~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~  224 (521)
T KOG2075|consen  145 FDAMFYGGLAEDASLEIRLPDVEPAAFLAFLRFLYSDEVKLAADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFL  224 (521)
T ss_pred             HHHHhccCcccccCceeecCCcChhHhHHHHHHHhcchhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHH
Confidence            7889988  45557899999999999999999999999999999999999999999999999999    55666666655


Q ss_pred             CCCC
Q psy1847          77 PLPQ   80 (86)
Q Consensus        77 ~~~~   80 (86)
                      -|+|
T Consensus       225 ~L~q  228 (521)
T KOG2075|consen  225 ELFQ  228 (521)
T ss_pred             HHHH
Confidence            5555

>KOG2716|consensus

Probab=97.51  E-value=0.00013  Score=51.45  Aligned_cols=70  Identities=16%  Similarity=0.298  Sum_probs=55.6

Q ss_pred             chhhhcCCC---CCCCCeEEecCCCHHHHHHHHHhhhcceEEecC--CcHHHHHHHHHhcCcccHHhhhhcCCCC
Q psy1847           2 EDESLFTEH---FDKHPIIILKDIKFTELQSMIDYMYEGEVNISQ--DQLPSFLKAAASIQLKGLTQNVKAETPL   71 (86)
Q Consensus         2 YFr~mF~~~---e~~~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~--~~v~~ll~aA~~Lqi~~l~~~c~~~~~~   71 (86)
                      ||++||..+   +.....-.+-|=||..|..||+||=-|.+.+++  .++.++++=|.++.+.+|++.|.++++.
T Consensus        29 ~fk~m~e~~i~~~~d~s~~IFIDRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~EA~fYlL~~Lv~~C~~~i~~  103 (230)
T KOG2716|consen   29 FFKTMLETDIPVEKDESGCIFIDRSPKHFDTILNFMRDGDVDLPESEKELKELLREAEFYLLDGLVELCQSAIAR  103 (230)
T ss_pred             HHHHHhhcCCccccCCcCcEEecCChhHHHHHHHhhhcccccCccchHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Confidence            789999883   233333344566899999999999999888755  5577999999999999999999886443

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=97.23  E-value=0.0005  Score=41.24  Aligned_cols=63  Identities=19%  Similarity=0.253  Sum_probs=45.3

Q ss_pred             chhhhcCCC-----CCCCCeEEecCCCHHHHHHHHHhhhc-ceEEec-CCcHHHHHHHHHhcCcccH-Hhhh
Q psy1847           2 EDESLFTEH-----FDKHPIIILKDIKFTELQSMIDYMYE-GEVNIS-QDQLPSFLKAAASIQLKGL-TQNV   65 (86)
Q Consensus         2 YFr~mF~~~-----e~~~~~V~L~~vs~~~l~~lL~f~YT-G~l~i~-~~~v~~ll~aA~~Lqi~~l-~~~c   65 (86)
                      +|..||...     ......+.| |=++..|+.||+|+-+ |++..+ ...+..+++-|.++++..+ ++.|
T Consensus        24 ~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~Ea~fy~l~~l~i~~c   94 (94)
T PF02214_consen   24 LLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPIPDEICLEELLEEAEFYGLDELFIEDC   94 (94)
T ss_dssp             TTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB---TTS-HHHHHHHHHHHT-HHHHBHHC
T ss_pred             hhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccCCCCchhHHHHHHHHHHcCCCccccCCC
Confidence            566666642     234456665 6799999999999999 788774 6789999999999999998 8877

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>smart00512 Skp1 Found in Skp1 protein family

Probab=97.01  E-value=0.00099  Score=40.95  Aligned_cols=44  Identities=23%  Similarity=0.279  Sum_probs=36.5

Q ss_pred             CeEEecCCCHHHHHHHHHhhhcceEE-------------------ecCCcHHHHHHHHHhcCc
Q psy1847          15 PIIILKDIKFTELQSMIDYMYEGEVN-------------------ISQDQLPSFLKAAASIQL   58 (86)
Q Consensus        15 ~~V~L~~vs~~~l~~lL~f~YTG~l~-------------------i~~~~v~~ll~aA~~Lqi   58 (86)
                      ..|.+++|+..+|+.+++|++-.+-.                   ++.+.+-+|+.||++|+|
T Consensus        42 ~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~~F~~~d~~~l~dLl~AAnyL~I  104 (104)
T smart00512       42 NPIPLPNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTWDAEFLKIDQETLFELILAANYLDI  104 (104)
T ss_pred             CCccCCCcCHHHHHHHHHHHHHcccCCCCccccccccHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            57999999999999999999865421                   455578899999999986

Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.

>KOG1724|consensus

Probab=96.96  E-value=0.00096  Score=44.77  Aligned_cols=53  Identities=21%  Similarity=0.271  Sum_probs=45.2

Q ss_pred             CeEEecCCCHHHHHHHHHhhhcceEE-------------------------ecCCcHHHHHHHHHhcCcccHHhhhhc
Q psy1847          15 PIIILKDIKFTELQSMIDYMYEGEVN-------------------------ISQDQLPSFLKAAASIQLKGLTQNVKA   67 (86)
Q Consensus        15 ~~V~L~~vs~~~l~~lL~f~YTG~l~-------------------------i~~~~v~~ll~aA~~Lqi~~l~~~c~~   67 (86)
                      ..|.|+.|...+|+.+|+|++..+-.                         +....+-+++.||++|.|++|.+.|+.
T Consensus        44 ~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck  121 (162)
T KOG1724|consen   44 DPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAEFLKVDQGTLFDLILAANYLDIKGLLDLTCK  121 (162)
T ss_pred             CccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHH
Confidence            36899999999999999999996532                         334578899999999999999999964

>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised

Probab=96.87  E-value=0.00037  Score=51.14  Aligned_cols=65  Identities=9%  Similarity=0.138  Sum_probs=55.5

Q ss_pred             CchhhhcCC---CCCCCCeEEe-cCCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhh
Q psy1847           1 MEDESLFTE---HFDKHPIIIL-KDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNV   65 (86)
Q Consensus         1 ~YFr~mF~~---~e~~~~~V~L-~~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c   65 (86)
                      .||+..+..   .....+.|.| ...+..+|+=|++|+......++.+||-.++-.|++|||++|++.|
T Consensus        28 ~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~Lve~c   96 (317)
T PF11822_consen   28 RYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQMESLVEEC   96 (317)
T ss_pred             HHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccHHHHHHH
Confidence            399999964   3334455666 4578889999999999999999999999999999999999999987

This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.

>KOG4591|consensus

Probab=96.83  E-value=0.00059  Score=47.90  Aligned_cols=60  Identities=23%  Similarity=0.391  Sum_probs=49.6

Q ss_pred             CCeEEecCCCHHHHHHHHHhhhcceEEecCCc--HHHHHHHHHhcCcccHHhhh----hcCCCCCC
Q psy1847          14 HPIIILKDIKFTELQSMIDYMYEGEVNISQDQ--LPSFLKAAASIQLKGLTQNV----KAETPLEN   73 (86)
Q Consensus        14 ~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~~--v~~ll~aA~~Lqi~~l~~~c----~~~~~~~~   73 (86)
                      .....+.|+.+++++..|.++||.++....+.  +.++.++|+.+|+.-+++.|    .+...++|
T Consensus       105 se~~~~dDad~Ea~~t~iRWIYTDEidfk~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~N  170 (280)
T KOG4591|consen  105 SEELDLDDADFEAFHTAIRWIYTDEIDFKEDDEFLLELCELANRFQLELLKERCEKGLGALLHVDN  170 (280)
T ss_pred             hhhhcccccCHHHHHHhheeeeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhh
Confidence            34566789999999999999999999887755  67799999999999999999    34444444

>KOG0783|consensus

Probab=96.79  E-value=0.00041  Score=56.70  Aligned_cols=68  Identities=16%  Similarity=0.247  Sum_probs=52.6

Q ss_pred             CchhhhcCC--CCCCCCeEEecCCCHHHHHHHHHhhh-cceEEe-----cCCcHHHHHHHHHhcCcccHHhhhhcC
Q psy1847           1 MEDESLFTE--HFDKHPIIILKDIKFTELQSMIDYMY-EGEVNI-----SQDQLPSFLKAAASIQLKGLTQNVKAE   68 (86)
Q Consensus         1 ~YFr~mF~~--~e~~~~~V~L~~vs~~~l~~lL~f~Y-TG~l~i-----~~~~v~~ll~aA~~Lqi~~l~~~c~~~   68 (86)
                      .||..||..  .|+..-.+.+.-+..+.|+.+|+|+| +-++.+     ..+-+.+++..|+.|-|.+|+..|...
T Consensus       735 EYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~~~il~iaDqlli~~Lk~Ice~~  810 (1267)
T KOG0783|consen  735 EYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDFMFEILSIADQLLILELKSICEQS  810 (1267)
T ss_pred             HHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            399999998  45544444455567999999999999 555543     235578899999999999999999654

>KOG3473|consensus

Probab=96.63  E-value=0.0035  Score=39.15  Aligned_cols=56  Identities=16%  Similarity=0.296  Sum_probs=46.4

Q ss_pred             hhhhcCC----CCCCCCeEEecCCCHHHHHHHHHhh-----hcce------EEecCCcHHHHHHHHHhcCc
Q psy1847           3 DESLFTE----HFDKHPIIILKDIKFTELQSMIDYM-----YEGE------VNISQDQLPSFLKAAASIQL   58 (86)
Q Consensus         3 Fr~mF~~----~e~~~~~V~L~~vs~~~l~~lL~f~-----YTG~------l~i~~~~v~~ll~aA~~Lqi   58 (86)
                      .|+||.+    .+....+|.++++.+..++.+.+|+     ||+.      ..|+++-+.+||.||++|.+
T Consensus        42 iraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~IppemaleLL~aAn~Lec  112 (112)
T KOG3473|consen   42 IRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMALELLMAANYLEC  112 (112)
T ss_pred             HHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCCHHHHHHHHHHhhhhcC
Confidence            4788886    3566788999999999999999987     7776      36677889999999999863

>KOG1665|consensus

Probab=95.49  E-value=0.049  Score=38.97  Aligned_cols=64  Identities=16%  Similarity=0.280  Sum_probs=51.3

Q ss_pred             hhhcCCC--CC--CCCeEEecCCCHHHHHHHHHhhhcceEEe-cCCcHHHHHHHHHhcCcccHHhhhhc
Q psy1847           4 ESLFTEH--FD--KHPIIILKDIKFTELQSMIDYMYEGEVNI-SQDQLPSFLKAAASIQLKGLTQNVKA   67 (86)
Q Consensus         4 r~mF~~~--e~--~~~~V~L~~vs~~~l~~lL~f~YTG~l~i-~~~~v~~ll~aA~~Lqi~~l~~~c~~   67 (86)
                      -+||..+  .+  .+.--++-|=++..|+.||+|+-.|++.. +.-++..+|+.|+++||-++++....
T Consensus        37 a~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~~s~i~~lgvLeeArff~i~sL~~hle~  105 (302)
T KOG1665|consen   37 AAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPSLSDIDCLGVLEEARFFQILSLKDHLED  105 (302)
T ss_pred             HHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCceeecCCccHHHHHHHhhHHhhHhHHhHHhh
Confidence            3678772  22  23445667789999999999999999855 66889999999999999999988744

>KOG0511|consensus

Probab=94.73  E-value=0.024  Score=43.12  Aligned_cols=58  Identities=17%  Similarity=0.153  Sum_probs=48.9

Q ss_pred             chhhhcCC--CC-C---CCCeEEecCCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcc
Q psy1847           2 EDESLFTE--HF-D---KHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLK   59 (86)
Q Consensus         2 YFr~mF~~--~e-~---~~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~   59 (86)
                      ||+.||.+  .+ +   ..+...++.+...+.+.++.|+|+.+..|.++-..+++-.|++|.+.
T Consensus       315 yfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal~  378 (516)
T KOG0511|consen  315 YFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLALA  378 (516)
T ss_pred             HHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhhh
Confidence            99999998  34 2   13445578888999999999999999999999999999999988765

>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []

Probab=93.72  E-value=0.13  Score=28.78  Aligned_cols=34  Identities=15%  Similarity=0.209  Sum_probs=24.6

Q ss_pred             hhhhcCCCCCCCCeEEecCCCHHHHHHHHHhhhc
Q psy1847           3 DESLFTEHFDKHPIIILKDIKFTELQSMIDYMYE   36 (86)
Q Consensus         3 Fr~mF~~~e~~~~~V~L~~vs~~~l~~lL~f~YT   36 (86)
                      ++.|+.+.......|.|++|+...|+.+++|++-
T Consensus        26 i~~ml~~~~~~~~~Ipl~~v~~~~L~kViewc~~   59 (62)
T PF03931_consen   26 IKNMLEDLGDEDEPIPLPNVSSRILKKVIEWCEH   59 (62)
T ss_dssp             HHHHHHCTCCCGTEEEETTS-HHHHHHHHHHHHH
T ss_pred             HHHHHhhhcccccccccCccCHHHHHHHHHHHHh
Confidence            4666665322222799999999999999999974

It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....

>KOG2714|consensus

Probab=92.55  E-value=0.24  Score=38.06  Aligned_cols=62  Identities=15%  Similarity=0.129  Sum_probs=49.2

Q ss_pred             chhhhcCCC---CCCCCeEEecCCCHHHHHHHHHhhhcceEEecCCcHHHHHH-HHHhcCcccHHh
Q psy1847           2 EDESLFTEH---FDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLK-AAASIQLKGLTQ   63 (86)
Q Consensus         2 YFr~mF~~~---e~~~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~-aA~~Lqi~~l~~   63 (86)
                      +|-+||+.+   ...+....+-|=+|+.|..||+|+=||++.++.-....++. =|.++++.+++.
T Consensus        37 ffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~~g~~~~~llhdEA~fYGl~~llr  102 (465)
T KOG2714|consen   37 FFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLDASGVFPERLLHDEAMFYGLTPLLR  102 (465)
T ss_pred             HHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCCCccCchhhhhhhhhhhcCcHHHHH
Confidence            477788752   33344445567789999999999999999998877777776 999999999988

>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []

Probab=92.21  E-value=0.063  Score=31.49  Aligned_cols=28  Identities=29%  Similarity=0.380  Sum_probs=22.7

Q ss_pred             ecCCcHHHHHHHHHhcCcccHHhhhhcC
Q psy1847          41 ISQDQLPSFLKAAASIQLKGLTQNVKAE   68 (86)
Q Consensus        41 i~~~~v~~ll~aA~~Lqi~~l~~~c~~~   68 (86)
                      ++.+.+.+++.||.+|+|++|.+.|+..
T Consensus        11 ~~~~~L~~l~~AA~yL~I~~L~~~~~~~   38 (78)
T PF01466_consen   11 VDNDELFDLLNAANYLDIKGLLDLCCKY   38 (78)
T ss_dssp             S-HHHHHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHcchHHHHHHHHH
Confidence            4667899999999999999999999643

It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....

>KOG3840|consensus

Probab=86.04  E-value=1.4  Score=32.97  Aligned_cols=47  Identities=11%  Similarity=0.226  Sum_probs=38.4

Q ss_pred             CCCeEEe-cCCCHHHHHHHHHhhhcceEEe-cCCcHHHHHHHHHhcCcc
Q psy1847          13 KHPIIIL-KDIKFTELQSMIDYMYEGEVNI-SQDQLPSFLKAAASIQLK   59 (86)
Q Consensus        13 ~~~~V~L-~~vs~~~l~~lL~f~YTG~l~i-~~~~v~~ll~aA~~Lqi~   59 (86)
                      ...+..+ .||+...|+.||+|--||.++- +.-.|.+|-+|+++|-|+
T Consensus       137 ErgEyeVAdGi~s~vFRAILdYYksG~iRCP~~vSvpELrEACDYLlip  185 (438)
T KOG3840|consen  137 ERDEFEVADGMTSSCFRAILDYYQSGTMRCPSSVSVSELREACDYLLVP  185 (438)
T ss_pred             cCCceehhcchhHHHHHHHHHHHhcCceeCCCCCchHHHHhhcceEEee
Confidence            3444454 6799999999999999999976 447899999999999775

>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]

Probab=82.76  E-value=2.9  Score=27.58  Aligned_cols=52  Identities=19%  Similarity=0.169  Sum_probs=40.5

Q ss_pred             eEEecCCCHHHHHHHHHhhhcceEEec-------------------------CCcHHHHHHHHHhcCcccHHhhhhc
Q psy1847          16 IIILKDIKFTELQSMIDYMYEGEVNIS-------------------------QDQLPSFLKAAASIQLKGLTQNVKA   67 (86)
Q Consensus        16 ~V~L~~vs~~~l~~lL~f~YTG~l~i~-------------------------~~~v~~ll~aA~~Lqi~~l~~~c~~   67 (86)
                      .+..+.|...++..+++||=..+-..+                         ++.+-++.-+|++|.++.|.+.||-
T Consensus        40 p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCK  116 (158)
T COG5201          40 PIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCK  116 (158)
T ss_pred             CCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHH
Confidence            356789999999999999976543332                         2335568889999999999999964

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	86
2vpk_A	116	Myoneurin; transcription regulation, transcription	8e-07
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	6e-06
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	6e-06
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	9e-06
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	1e-05
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	1e-05
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	1e-05
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	1e-05
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	4e-05
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	5e-05
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	6e-05
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	8e-05
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	8e-05
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	1e-04
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	1e-04

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116

 Score = 42.2 bits (100), Expect = 8e-07
 Identities = 7/54 (12%), Positives = 26/54 (48%)

Query: 5   SLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQL 58
           +++    + +  +    +K    Q +++++Y G +N+    +    +AA  +++
Sbjct: 50  AIYRSTSENNVFLDQSQVKADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKV 103

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135

 Score = 40.3 bits (95), Expect = 6e-06
 Identities = 7/57 (12%), Positives = 21/57 (36%), Gaps = 2/57 (3%)

Query: 5   SLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGL 61
            ++ +       ++L          ++D+ Y G + ++       L AA  +++   
Sbjct: 53  RIYGD--GTGGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAAKELRVPEA 107

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124

 Score = 40.3 bits (95), Expect = 6e-06
 Identities = 7/55 (12%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 5   SLFTEHFD-KHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQL 58
           S      D +  I + +++     + +I + Y  ++ +S++ +    K    + +
Sbjct: 57  SRIVGQADGELNITLPEEVTVKGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSV 111

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119

 Score = 39.5 bits (93), Expect = 9e-06
 Identities = 11/57 (19%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 5   SLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGL 61
            LF    D+  ++ L       L  ++++MY  ++++S + +   L  A  +Q++ +
Sbjct: 55  MLFV---DQKDVVHLDISNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDI 108

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119

 Score = 39.5 bits (93), Expect = 1e-05
 Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 5   SLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQL 58
           SL+ +       ++L          ++D+ Y G + ++       L AA  +++
Sbjct: 52  SLYGD--GSGGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAARELRV 103

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138

 Score = 39.6 bits (93), Expect = 1e-05
 Identities = 6/55 (10%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 5   SLFTEHFD-KHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQL 58
           S      D +  + + +++     + +I + Y  ++ +S+D +    +    + +
Sbjct: 64  SRIVGQTDAELTVTLPEEVTVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSV 118

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125

 Score = 39.5 bits (93), Expect = 1e-05
 Identities = 4/58 (6%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 5   SLFTEHF-DKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGL 61
                   +   + + +++       ++ + Y  ++ +S++ +   ++ A  +++  L
Sbjct: 60  QALVGQTKNDLVVSLPEEVTARGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHNL 117

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120

 Score = 39.1 bits (92), Expect = 1e-05
 Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 5   SLFTEHF--DKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGL 61
            LFT     D+  +  +  +    L +++D+ Y   + +S   +   L AA  +++  +
Sbjct: 53  KLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTATLTVSTANVGDILSAARLLEIPAV 111

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119

 Score = 38.0 bits (89), Expect = 4e-05
 Identities = 7/60 (11%), Positives = 23/60 (38%), Gaps = 7/60 (11%)

Query: 4   ESLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQ 63
                         + + I  +    +++++Y   V +   +L    +AA ++ ++ L +
Sbjct: 57  GRRGQW-------ALGEGISPSTFAQLLNFVYGESVELQPGELRPLQEAARALGVQSLEE 109

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121

 Score = 37.6 bits (88), Expect = 5e-05
 Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 3/54 (5%)

Query: 5   SLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQL 58
            LF  +        L  +     Q +++Y Y   +    + L   L AA  +++
Sbjct: 56  ILFHRNSQH---YTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEI 106

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129

 Score = 37.6 bits (88), Expect = 6e-05
 Identities = 7/57 (12%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 5   SLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGL 61
            LF        + +   ++    Q ++ + Y G ++++       +  A  +Q++ +
Sbjct: 61  DLFNNS-RSAVVELPAAVQPQSFQQILSFCYTGRLSMNVGDQDLLMYTAGFLQIQEI 116

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144

 Score = 37.7 bits (88), Expect = 8e-05
 Identities = 10/46 (21%), Positives = 26/46 (56%)

Query: 13  KHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQL 58
               I L+ I    ++ ++DY++ G++ +++D +   ++AA  + L
Sbjct: 87  STYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLL 132

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127

 Score = 37.2 bits (87), Expect = 8e-05
 Identities = 11/56 (19%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 5   SLFTEHF--DKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQL 58
           S+FT+    +   I +  +I       ++D+MY   +N+ +  + + +  A  +Q+
Sbjct: 57  SIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQM 112

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256

 Score = 38.0 bits (89), Expect = 1e-04
 Identities = 11/47 (23%), Positives = 27/47 (57%)

Query: 17  IILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQ 63
           I L+ I    ++ ++DY++ G++ +++D +   ++AA  + L  L  
Sbjct: 75  IELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKT 121

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109

 Score = 36.8 bits (86), Expect = 1e-04
 Identities = 11/45 (24%), Positives = 22/45 (48%)

Query: 17 IILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGL 61
          I + D++      ++ YMY  E+++  D + + L AA    +  L
Sbjct: 53 IHIPDVEPAAFLILLKYMYSDEIDLEADTVLATLYAAKKYIVPAL 97

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	86
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	99.67
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	99.66
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	99.64
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	99.64
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	99.63
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	99.63
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	99.62
2vpk_A	116	Myoneurin; transcription regulation, transcription	99.62
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	99.62
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	99.61
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	99.61
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	99.6
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	99.57
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	99.56
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	99.55
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	99.54
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	99.54
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	99.52
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	99.5
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	99.42
2ast_A	159	S-phase kinase-associated protein 1A; SCF-substrat	99.32
4ajy_C	97	Transcription elongation factor B polypeptide 1; E	99.06
1fs1_B	141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	99.0
2p1m_A	160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	98.96
3v7d_A	169	Suppressor of kinetochore protein 1; WD 40 domain,	98.26
2fnj_C	96	Transcription elongation factor B polypeptide 1; b	98.21
1hv2_A	99	Elongin C, ELC1; protein-peptide complex, signalin	98.04
3drz_A	107	BTB/POZ domain-containing protein KCTD5; potassium	97.9
1vcb_B	112	Protein (elongin C); tumor suppressor, cancer, ubi	97.69
3drx_A	202	BTB/POZ domain-containing protein KCTD5; golgi, gr	96.64
1s1g_A	124	Potassium voltage-gated channel subfamily D membe;	95.94
2nz0_B	140	Potassium voltage-gated channel subfamily D membe;	95.48
1nn7_A	105	Potassium channel KV4.2; teteramerization domain,	95.28
3kvt_A	115	Potassium channel protein SHAW; tetramerization do	94.44
1t1d_A	100	Protein (potassium channel KV1.1); potassium chann	93.37

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}

Probab=99.67  E-value=1.1e-16  Score=101.73  Aligned_cols=73  Identities=11%  Similarity=0.225  Sum_probs=64.9

Q ss_pred             chhhhcCCCCCCCCeEEec-CCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhh----hcCCCCCCC
Q psy1847           2 EDESLFTEHFDKHPIIILK-DIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNV----KAETPLENA   74 (86)
Q Consensus         2 YFr~mF~~~e~~~~~V~L~-~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c----~~~~~~~~~   74 (86)
                      |||+||.+.......|.++ ++++++++.+|+|+|||++.++.+++.+++.+|++|+++.|++.|    .+.++.+||
T Consensus        61 yF~~~f~~~~~e~~~i~l~~~v~~~~~~~lL~~~Ytg~~~i~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~l~~sna  138 (138)
T 2z8h_A           61 YFHSRIVGQTDAELTVTLPEEVTVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKFLDSTS  138 (138)
T ss_dssp             HHHHHHTTCCCTTEEEECCTTSCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHHTCGGGHHHHHHHTTCCCSCCCC
T ss_pred             HHHHHHhcCCCCCceEEeCCCCCHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccccC
Confidence            9999999865556789995 899999999999999999999999999999999999999999999    455555554

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A

Probab=99.66  E-value=1.5e-16  Score=99.27  Aligned_cols=66  Identities=8%  Similarity=0.241  Sum_probs=62.4

Q ss_pred             chhhhcCCCCCCCCeEEecC-CCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhhhc
Q psy1847           2 EDESLFTEHFDKHPIIILKD-IKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVKA   67 (86)
Q Consensus         2 YFr~mF~~~e~~~~~V~L~~-vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c~~   67 (86)
                      |||+||.+.......|.+++ +++++|+.+|+|+|||++.++.+++.+++.+|++|+++++++.|.+
T Consensus        57 yF~~~f~~~~~e~~~i~l~~~~~~~~f~~~l~~iYtg~~~~~~~~v~~ll~~A~~l~i~~L~~~C~~  123 (125)
T 3ohu_A           57 YFWQALVGQTKNDLVVSLPEEVTARGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHNLEDSCFS  123 (125)
T ss_dssp             HHHHHHTTCCCSSCEEECCTTCCHHHHHHHHHHHTTSEEEECTTTHHHHHHHHHHHTBSSCTTSSCC
T ss_pred             HHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhHcCCceEECHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            89999998655578899998 9999999999999999999999999999999999999999999975

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}

Probab=99.64  E-value=2.2e-16  Score=96.14  Aligned_cols=65  Identities=20%  Similarity=0.264  Sum_probs=58.9

Q ss_pred             chhhhcCC--CCCCCCeEEecCCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhhhc
Q psy1847           2 EDESLFTE--HFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVKA   67 (86)
Q Consensus         2 YFr~mF~~--~e~~~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c~~   67 (86)
                      ||++||.+  .++. ..|.|+++++++++.+|+|+|||++.++.+++.+++.+|++|+++.+++.|..
T Consensus        37 ~F~~~f~~~~~e~~-~~i~l~~~~~~~f~~~l~~iYt~~~~~~~~~~~~ll~~A~~~~~~~L~~~c~~  103 (109)
T 2vkp_A           37 VFYAMFYGDLAEVK-SEIHIPDVEPAAFLILLKYMYSDEIDLEADTVLATLYAAKKYIVPALAKACVN  103 (109)
T ss_dssp             HHHHHHC------C-CEEEETTSCHHHHHHHHHHHHHCCCCCCTTTHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHhcCCcccCC-CeEEeCCCCHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            89999998  4555 89999999999999999999999999999999999999999999999999964

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A

Probab=99.64  E-value=1.6e-16  Score=98.43  Aligned_cols=66  Identities=17%  Similarity=0.325  Sum_probs=60.7

Q ss_pred             chhhhcCC--CCCCCCeEEecCCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhhhc
Q psy1847           2 EDESLFTE--HFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVKA   67 (86)
Q Consensus         2 YFr~mF~~--~e~~~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c~~   67 (86)
                      ||++||.+  .++....|.|+++++++++.+|+|+|||++.++.+++.+++.+|++|+++++++.|..
T Consensus        50 ~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll~~~Yt~~~~~~~~~~~~ll~~A~~~~i~~L~~~C~~  117 (120)
T 2if5_A           50 YFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTATLTVSTANVGDILSAARLLEIPAVSHVCAD  117 (120)
T ss_dssp             HHHHHHHC-----CCSEEECCSSCHHHHHHHHHHHHHSCCCCCGGGHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHhcCCccccCCceEEeCCCCHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            89999998  4677889999999999999999999999999999999999999999999999999964

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}

Probab=99.63  E-value=2.8e-16  Score=97.68  Aligned_cols=66  Identities=14%  Similarity=0.182  Sum_probs=61.8

Q ss_pred             chhhhcCCCCCCCCeEEecCCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhhhcCC
Q psy1847           2 EDESLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVKAET   69 (86)
Q Consensus         2 YFr~mF~~~e~~~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c~~~~   69 (86)
                      |||+||.+..  ...|.|+++++++++.+|+|+|||++.++.+++.+++.+|++|+++++++.|..-+
T Consensus        49 yF~~~f~~~~--~~~i~l~~~~~~~f~~ll~~iYtg~~~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l  114 (119)
T 3b84_A           49 FFQSLYGDGS--GGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAARELRVPEAVELCQSFK  114 (119)
T ss_dssp             HHHHHHTTTT--CCCEEECGGGHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred             HHHHHHCCCC--CCeEEeCCCCHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            8999999754  67899999999999999999999999999999999999999999999999997654

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}

Probab=99.63  E-value=2.2e-16  Score=100.27  Aligned_cols=66  Identities=11%  Similarity=0.168  Sum_probs=58.9

Q ss_pred             chhhhcCCCCCCCCeEEecCCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhhhcCC
Q psy1847           2 EDESLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVKAET   69 (86)
Q Consensus         2 YFr~mF~~~e~~~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c~~~~   69 (86)
                      |||+||.+..  ...|.|+++++++|+.+|+|+|||++.++.+++.+++.+|++|+++.|++.|..-+
T Consensus        50 yF~~mf~~~~--~~~i~l~~~~~~~f~~lL~fiYtg~~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~l  115 (135)
T 2yy9_A           50 FFQRIYGDGT--GGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAAKELRVPEAVELCQSFQ  115 (135)
T ss_dssp             HHHHTCC------CCEEECGGGHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred             HHHHHHcCCC--CCeEEeCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            8999999754  56899999999999999999999999999999999999999999999999996544

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}

Probab=99.62  E-value=5.5e-16  Score=96.96  Aligned_cols=68  Identities=12%  Similarity=0.212  Sum_probs=60.7

Q ss_pred             chhhhcCCCCCCCCeEEe-cCCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhhhcCC
Q psy1847           2 EDESLFTEHFDKHPIIIL-KDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVKAET   69 (86)
Q Consensus         2 YFr~mF~~~e~~~~~V~L-~~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c~~~~   69 (86)
                      ||++||.+.......|.+ .++++++++.+|+|+|||++.++.+++.+++.+|++|+++++++.|..-+
T Consensus        54 yF~~mf~~~~~e~~~i~l~~~v~~~~f~~lL~~iYtg~~~i~~~~v~~ll~~A~~~~~~~L~~~C~~~l  122 (124)
T 2ihc_A           54 YFHSRIVGQADGELNITLPEEVTVKGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSVHNIEESCFQFL  122 (124)
T ss_dssp             HHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHSEEEEETTTHHHHHHHHHHHTBSSCCGGGGGTC
T ss_pred             HHHHHHcCCCCCCceEeecCCcCHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence            899999985555578899 49999999999999999999999999999999999999999999998754

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}

Probab=99.62  E-value=5.8e-16  Score=95.52  Aligned_cols=64  Identities=14%  Similarity=0.344  Sum_probs=60.0

Q ss_pred             chhhhcCCCCCCCCeEEec--CCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhhhc
Q psy1847           2 EDESLFTEHFDKHPIIILK--DIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVKA   67 (86)
Q Consensus         2 YFr~mF~~~e~~~~~V~L~--~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c~~   67 (86)
                      ||++||.+.  ....|.|+  ++++++++.+|+|+|||++.++.+++.+++.+|++|+++++++.|..
T Consensus        47 yF~~~f~~~--~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~~~~~~v~~ll~~A~~~~i~~L~~~C~~  112 (116)
T 2vpk_A           47 YFGAIYRST--SENNVFLDQSQVKADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEEVVTKCKI  112 (116)
T ss_dssp             HHHHHHTTC--CCSCEECCTTTCCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHcCC--CCCeEEeecCCCCHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            899999976  36678888  99999999999999999999999999999999999999999999975

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A

Probab=99.62  E-value=6.5e-16  Score=96.61  Aligned_cols=66  Identities=18%  Similarity=0.398  Sum_probs=61.3

Q ss_pred             chhhhcCCCCC-CCCeEEe-cCCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhhhc
Q psy1847           2 EDESLFTEHFD-KHPIIIL-KDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVKA   67 (86)
Q Consensus         2 YFr~mF~~~e~-~~~~V~L-~~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c~~   67 (86)
                      ||++||.+... ....|.| +++++++++.+|+|+|||++.++.+++.+++.+|++|+++.+++.|..
T Consensus        54 ~F~~~f~~~~~e~~~~i~l~~~~~~~~f~~ll~~~Ytg~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~  121 (127)
T 1r29_A           54 LFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRK  121 (127)
T ss_dssp             HHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHhcCCccCCCCEEEeCCCCCHHHHHHHHHHHcCCCcCcCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            89999998322 6788999 999999999999999999999999999999999999999999999965

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}

Probab=99.61  E-value=4.9e-16  Score=99.81  Aligned_cols=67  Identities=16%  Similarity=0.267  Sum_probs=61.4

Q ss_pred             chhhhcCCC----CCCCCeEEecCCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhhhcC
Q psy1847           2 EDESLFTEH----FDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVKAE   68 (86)
Q Consensus         2 YFr~mF~~~----e~~~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c~~~   68 (86)
                      |||+||.+.    ++....|.|+++++++++.+|+|+|||++.++.+++.+++.+|++|++++|++.|..-
T Consensus        72 yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg~~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~  142 (144)
T 2ppi_A           72 YIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEF  142 (144)
T ss_dssp             HHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHTTSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred             HHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            899999872    3567899999999999999999999999999999999999999999999999999764

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}

Probab=99.61  E-value=5.6e-16  Score=97.40  Aligned_cols=66  Identities=12%  Similarity=0.279  Sum_probs=58.4

Q ss_pred             chhhhcCCCCCCCCeEEec-CCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhhhcCC
Q psy1847           2 EDESLFTEHFDKHPIIILK-DIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVKAET   69 (86)
Q Consensus         2 YFr~mF~~~e~~~~~V~L~-~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c~~~~   69 (86)
                      |||+||.+.  ....|.|+ ++++++|+.+|+|+|||++.++.+++.+++.+|++|+++++++.|.+-+
T Consensus        58 ~F~~~f~~~--~~~~i~l~~~~~~~~f~~ll~~iYtg~~~i~~~~~~~ll~~A~~~~i~~l~~~C~~~L  124 (129)
T 3ga1_A           58 YFRDLFNNS--RSAVVELPAAVQPQSFQQILSFCYTGRLSMNVGDQDLLMYTAGFLQIQEIMEKGTEFF  124 (129)
T ss_dssp             HHHHHHHHC--CCSEEECCTTCCHHHHHHHHHHHHHSEEECCTTTHHHHHHHHHHTTBTTSSCC-----
T ss_pred             HHHHHHcCC--CCCEEEECCCCCHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            899999976  66789997 9999999999999999999999999999999999999999999997654

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A

Probab=99.60  E-value=1.1e-15  Score=95.17  Aligned_cols=63  Identities=19%  Similarity=0.293  Sum_probs=59.5

Q ss_pred             chhhhcCCCCCCCCeEEecCCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhhhc
Q psy1847           2 EDESLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVKA   67 (86)
Q Consensus         2 YFr~mF~~~e~~~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c~~   67 (86)
                      ||++||.+.   ...|.|+++++++++.+|+|+|||++.++.+++.+++.+|++|+++++++.|.+
T Consensus        53 yF~~~f~~~---~~~i~l~~~~~~~f~~ll~~~Ytg~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~  115 (121)
T 1buo_A           53 MFEILFHRN---SQHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLK  115 (121)
T ss_dssp             HHHHHTTSC---CSEEEECSSCHHHHHHHHHHHHHSCCCCCGGGHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHcCC---CcEEEeCCCCHHHHHHHHHhhcCCCcCCCHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence            899999863   568999999999999999999999999999999999999999999999999965

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A

Probab=99.57  E-value=6e-16  Score=96.17  Aligned_cols=65  Identities=17%  Similarity=0.343  Sum_probs=59.9

Q ss_pred             chhhhcCCCCCCCCeEEecCCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhhhcCC
Q psy1847           2 EDESLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVKAET   69 (86)
Q Consensus         2 YFr~mF~~~e~~~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c~~~~   69 (86)
                      ||++||.+   ....|.++++++++++.+|+|+|||++.++.+++.+++.+|++|+++++++.|.+-+
T Consensus        52 yF~~~f~~---~~~~i~l~~~~~~~f~~ll~~~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~C~~~l  116 (119)
T 2q81_A           52 YFKMLFVD---QKDVVHLDISNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITACHALK  116 (119)
T ss_dssp             HHHHHHHH---CCSGGGGGGCCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcC---CCCEEEeCCCCHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            89999996   345788999999999999999999999999999999999999999999999997643

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B

Probab=99.56  E-value=4.2e-15  Score=102.23  Aligned_cols=73  Identities=18%  Similarity=0.281  Sum_probs=60.2

Q ss_pred             chhhhcCCC----CCCCCeEEecCCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhhh----cCCCCCC
Q psy1847           2 EDESLFTEH----FDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVK----AETPLEN   73 (86)
Q Consensus         2 YFr~mF~~~----e~~~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c~----~~~~~~~   73 (86)
                      ||++||++.    ++....|.|+++++.+|+.+|+|+|||++.++.+++.+++.+|++|+++++++.|.    ..++.+|
T Consensus        56 yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~~~n  135 (256)
T 3hve_A           56 YIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAEN  135 (256)
T ss_dssp             HHHHTC-----------CEEECSSCCHHHHHHHHHHHHHSCCCCC-CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCCSST
T ss_pred             HHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccCCCCcccHhHHHHHHHHHHHHChHHHHHHHHHHHHhhCCHhh
Confidence            999999972    45678999999999999999999999999999999999999999999999999994    4556666


Q ss_pred             C
Q psy1847          74 A   74 (86)
Q Consensus        74 ~   74 (86)
                      .
T Consensus       136 ~  136 (256)
T 3hve_A          136 C  136 (256)
T ss_dssp             T
T ss_pred             H
Confidence            4

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A

Probab=99.55  E-value=7.8e-15  Score=102.06  Aligned_cols=74  Identities=18%  Similarity=0.262  Sum_probs=61.7

Q ss_pred             CchhhhcCC--CCCCCCeEEec------CCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhhh----cC
Q psy1847           1 MEDESLFTE--HFDKHPIIILK------DIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVK----AE   68 (86)
Q Consensus         1 ~YFr~mF~~--~e~~~~~V~L~------~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c~----~~   68 (86)
                      .|||+||++  +++....|.|+      ++++.+|+.+|+|+|||++.++.+++.+++.+|++|+++++++.|.    +.
T Consensus        59 ~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~  138 (279)
T 3i3n_A           59 EYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKK  138 (279)
T ss_dssp             TTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHSEEEEETTTHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcCCcccCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHc
Confidence            499999998  57778899998      9999999999999999999999999999999999999999999994    34


Q ss_pred             CCCCCC
Q psy1847          69 TPLENA   74 (86)
Q Consensus        69 ~~~~~~   74 (86)
                      ++.+|.
T Consensus       139 l~~~n~  144 (279)
T 3i3n_A          139 LHLSNC  144 (279)
T ss_dssp             CCTTTH
T ss_pred             CCcchH
Confidence            555553

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}

Probab=99.54  E-value=4.7e-15  Score=96.04  Aligned_cols=73  Identities=19%  Similarity=0.281  Sum_probs=65.9

Q ss_pred             chhhhcCC--CCCCCCeEEecCCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhhh----cCCCCCCC
Q psy1847           2 EDESLFTE--HFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVK----AETPLENA   74 (86)
Q Consensus         2 YFr~mF~~--~e~~~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c~----~~~~~~~~   74 (86)
                      |||+||.+  .++....|.|+++++++|+.+|+|+|||++.++.+++.+++.+|++|+++.+++.|.    +.++.+|.
T Consensus        59 ~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~  137 (172)
T 3htm_A           59 VFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENA  137 (172)
T ss_dssp             HHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHHHSCCTTGGGTHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTTH
T ss_pred             HHHHHHccCccccCCCeEEecCCCHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHHHH
Confidence            99999998  566778999999999999999999999999999999999999999999999999994    45555554

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0

Probab=99.54  E-value=4.4e-15  Score=92.93  Aligned_cols=57  Identities=12%  Similarity=0.286  Sum_probs=53.4

Q ss_pred             CCCeEEecCCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhhhcCC
Q psy1847          13 KHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVKAET   69 (86)
Q Consensus        13 ~~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c~~~~   69 (86)
                      ....|.|+++++++|+.+|+|+|||++.++.+++.+++.+|++||++.+++.|....
T Consensus        59 ~~~~i~l~~v~~~~f~~ll~fiYtg~~~i~~~~v~~ll~aA~~l~i~~l~~~C~~~~  115 (119)
T 3m5b_A           59 RGQWALGEGISPSTFAQLLNFVYGESVELQPGELRPLQEAARALGVQSLEEACWRAR  115 (119)
T ss_dssp             CEEEECCSSCCHHHHHHHHHHHTTCCEEECGGGHHHHHHHHHHTTCHHHHHHHHHHC
T ss_pred             CCCEEEeCCCCHHHHHHHHHHHcCCCcCcCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            346789999999999999999999999999999999999999999999999998754

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}

Probab=99.52  E-value=1.8e-15  Score=95.67  Aligned_cols=74  Identities=20%  Similarity=0.278  Sum_probs=61.9

Q ss_pred             chhhhcCC--CCCCCCeEEecCCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhhhcC----CCCCCCC
Q psy1847           2 EDESLFTE--HFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVKAE----TPLENAA   75 (86)
Q Consensus         2 YFr~mF~~--~e~~~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c~~~----~~~~~~~   75 (86)
                      ||++||.+  .++....|.++++++++++.+|+|+|||++.++.+++.+++.+|++|+++++++.|..-    ++.+|..
T Consensus        50 ~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~  129 (145)
T 4eoz_A           50 VFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAA  129 (145)
T ss_dssp             HHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHHSCCTTGGGTHHHHHHHHHHTTCHHHHHHHHCC-----------
T ss_pred             HHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhccCccCCcHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCHHHHH
Confidence            89999998  34556899999999999999999999999999999999999999999999999999654    4555544

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A

Probab=99.50  E-value=1.5e-14  Score=89.77  Aligned_cols=59  Identities=17%  Similarity=0.345  Sum_probs=55.5

Q ss_pred             chhhhcCCCCCCCCeEEecCCCHHHHHHHHHhhhcceE-EecCCcHHHHHHHHHhcCcccHHh
Q psy1847           2 EDESLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEV-NISQDQLPSFLKAAASIQLKGLTQ   63 (86)
Q Consensus         2 YFr~mF~~~e~~~~~V~L~~vs~~~l~~lL~f~YTG~l-~i~~~~v~~ll~aA~~Lqi~~l~~   63 (86)
                      ||++||.+.   ...|.++++++.+|+.+|+|+|||++ .++.+++.+++.+|++|+++++++
T Consensus        56 ~F~~~f~~~---~~~i~l~~~~~~~f~~~l~~~Ytg~~~~~~~~~~~~ll~~A~~l~i~~L~~  115 (116)
T 3fkc_A           56 YFHQLFSVA---GQVVELSFIRAEIFAEILNYIYSSKIVRVRSDLLDELIKSGQLLGVKFIAA  115 (116)
T ss_dssp             HHHHHTTSC---CSEEEECSSCHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHHTCHHHHT
T ss_pred             HHHHHHcCC---CCEEEeCCCCHHHHHHHHHhhcCCCcCCCCHHHHHHHHHHHHHhCccccCc
Confidence            899999975   56899999999999999999999999 799999999999999999999875

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=99.42  E-value=1.4e-13  Score=96.74  Aligned_cols=74  Identities=20%  Similarity=0.288  Sum_probs=64.8

Q ss_pred             chhhhcCC--CCCCCCeEEecCCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhhh----cCCCCCCCC
Q psy1847           2 EDESLFTE--HFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVK----AETPLENAA   75 (86)
Q Consensus         2 YFr~mF~~--~e~~~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c~----~~~~~~~~~   75 (86)
                      ||++||.+  .++....|.|+++++++|+.+|+|+|||++.++.+++.+++.+|+.|+++.|++.|.    +.++.+|..
T Consensus       199 ~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~  278 (312)
T 3hqi_A          199 VFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAA  278 (312)
T ss_dssp             HHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTTHH
T ss_pred             HHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHhCHHHHHHHHHHHHHccCCHHHHH
Confidence            89999998  577788999999999999999999999999999999999999999999999999994    455666654

>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*

Probab=99.06  E-value=1.9e-10  Score=69.60  Aligned_cols=57  Identities=14%  Similarity=0.175  Sum_probs=48.4

Q ss_pred             chhhhcCC----CCCCCCeEEecCCCHHHHHHHHHhhh-----c---ceEE---ecCCcHHHHHHHHHhcCc
Q psy1847           2 EDESLFTE----HFDKHPIIILKDIKFTELQSMIDYMY-----E---GEVN---ISQDQLPSFLKAAASIQL   58 (86)
Q Consensus         2 YFr~mF~~----~e~~~~~V~L~~vs~~~l~~lL~f~Y-----T---G~l~---i~~~~v~~ll~aA~~Lqi   58 (86)
                      |||+||.+    .+.....|.|++|++.+|+.+++|+|     +   +++.   |+++++.+|+.||++|+.
T Consensus        26 ~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i~~~~l~eLl~AAnyL~~   97 (97)
T 4ajy_C           26 TIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC   97 (97)
T ss_dssp             HHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCCCGGGHHHHHHHHHHHTC
T ss_pred             HHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCCCcCcCCHHHHHHHHHHHhhhCC
Confidence            89999986    34567889999999999999999999     5   7787   999999999999999973

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D

Probab=99.00  E-value=1.1e-10  Score=75.00  Aligned_cols=65  Identities=15%  Similarity=0.221  Sum_probs=57.8

Q ss_pred             chhhhcCCCCCCCCeEEecCCCHHHHHHHHHhhhcce--------------------------EEecCCcHHHHHHHHHh
Q psy1847           2 EDESLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGE--------------------------VNISQDQLPSFLKAAAS   55 (86)
Q Consensus         2 YFr~mF~~~e~~~~~V~L~~vs~~~l~~lL~f~YTG~--------------------------l~i~~~~v~~ll~aA~~   55 (86)
                      |||.||....  ...|.|++|++.+|+.+++|+|+++                          +.++.+++.+|+.||++
T Consensus        26 ~ik~ml~~~~--~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~vd~~~l~eLi~AAny  103 (141)
T 1fs1_B           26 TIKTMLEDLG--MDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANY  103 (141)
T ss_dssp             HHHHHHHHTC--CSSEECTTCCHHHHHHHHHHHHHHTTCC-----------------HHHHHHTCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcC--CCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhhhhHHHHHHHhCCHHHHHHHHHHHHH
Confidence            7889997632  5679999999999999999999988                          67889999999999999


Q ss_pred             cCcccHHhhhhcC
Q psy1847          56 IQLKGLTQNVKAE   68 (86)
Q Consensus        56 Lqi~~l~~~c~~~   68 (86)
                      |+|++|.+.|+.-
T Consensus       104 L~I~~Lldl~c~~  116 (141)
T 1fs1_B          104 LDIKGLLDVTCKT  116 (141)
T ss_dssp             HTCHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHH
Confidence            9999999999643

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*

Probab=98.96  E-value=1.9e-10  Score=75.31  Aligned_cols=66  Identities=17%  Similarity=0.165  Sum_probs=36.7

Q ss_pred             chhhhcCCCCCCCCeEEecCCCHHHHHHHHHhhhcce---------------------------EEecCCcHHHHHHHHH
Q psy1847           2 EDESLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGE---------------------------VNISQDQLPSFLKAAA   54 (86)
Q Consensus         2 YFr~mF~~~e~~~~~V~L~~vs~~~l~~lL~f~YTG~---------------------------l~i~~~~v~~ll~aA~   54 (86)
                      |||.||... +....|.|++|++.+|+.+++|+|+++                           +.++.+++.+|+.||+
T Consensus        28 ~ik~ml~~~-~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~~i~~wD~~Fl~vd~~~l~eLi~AAn  106 (160)
T 2p1m_A           28 TIAHMVEDD-CVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAAN  106 (160)
T ss_dssp             TTC-------------CCTTSCHHHHHHHHHC------------------------------------------CHHHHH
T ss_pred             HHHHHHHcc-CCCCceeCCcCcHHHHHHHHHHHHHcccCCCcccccccccccccchhhHHHHHHHcCCHHHHHHHHHHHH
Confidence            788899763 234579999999999999999999998                           5788999999999999


Q ss_pred             hcCcccHHhhhhcC
Q psy1847          55 SIQLKGLTQNVKAE   68 (86)
Q Consensus        55 ~Lqi~~l~~~c~~~   68 (86)
                      +|+|++|.++|+.-
T Consensus       107 yL~I~~Lldl~c~~  120 (160)
T 2p1m_A          107 YLNIKNLLDLTCQT  120 (160)
T ss_dssp             HTTCHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHH
Confidence            99999999999643

>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*

Probab=98.26  E-value=5.5e-07  Score=59.35  Aligned_cols=67  Identities=15%  Similarity=0.201  Sum_probs=52.7

Q ss_pred             chhhhcCCCC------CCCCeEEecCCCHHHHHHHHHhhhcce-------------------------EEecCCcHHHHH
Q psy1847           2 EDESLFTEHF------DKHPIIILKDIKFTELQSMIDYMYEGE-------------------------VNISQDQLPSFL   50 (86)
Q Consensus         2 YFr~mF~~~e------~~~~~V~L~~vs~~~l~~lL~f~YTG~-------------------------l~i~~~~v~~ll   50 (86)
                      ++|.|+....      .....|.|++|+..+|+.+++|++..+                         +.++.+.+-+|+
T Consensus        31 tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~i~~wD~~Fl~vd~~~LfeLi  110 (169)
T 3v7d_A           31 LLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEII  110 (169)
T ss_dssp             HHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC--------CCCCCHHHHHHTCSCHHHHHHHH
T ss_pred             HHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCcccccccccccccccHHHHHHHcCCHHHHHHHH
Confidence            4567776521      223689999999999999999998865                         246667889999


Q ss_pred             HHHHhcCcccHHhhhhcC
Q psy1847          51 KAAASIQLKGLTQNVKAE   68 (86)
Q Consensus        51 ~aA~~Lqi~~l~~~c~~~   68 (86)
                      .||++|+|++|.+.|+..
T Consensus       111 ~AAnyLdIk~Lldl~c~~  128 (169)
T 3v7d_A          111 LAANYLNIKPLLDAGCKV  128 (169)
T ss_dssp             HHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHhCcHHHHHHHHHH
Confidence            999999999999999653

>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B

Probab=98.21  E-value=1.5e-06  Score=52.35  Aligned_cols=57  Identities=12%  Similarity=0.110  Sum_probs=46.4

Q ss_pred             chhhhcCC----CCCCCCeEEecCCCHHHHHHHHHhhhcce-----------EEecCCcHHHHHHHHHhcCc
Q psy1847           2 EDESLFTE----HFDKHPIIILKDIKFTELQSMIDYMYEGE-----------VNISQDQLPSFLKAAASIQL   58 (86)
Q Consensus         2 YFr~mF~~----~e~~~~~V~L~~vs~~~l~~lL~f~YTG~-----------l~i~~~~v~~ll~aA~~Lqi   58 (86)
                      ++|.|+..    .+.....|.|++|+..+|+.+++|+|..+           -.++.+.+-+|+.||++|+|
T Consensus        25 ~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~i~~w~vd~~~l~eLi~AAnyLdI   96 (96)
T 2fnj_C           25 TIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC   96 (96)
T ss_dssp             HHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHSCCSCCCCCCCCTTTHHHHHHHHHHHTC
T ss_pred             HHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCCCcccCCCcccCHHHHHHHHHHHHHhCc
Confidence            57888876    23345689999999999999999999876           26888999999999999986

>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1

Probab=98.04  E-value=3.8e-06  Score=50.87  Aligned_cols=57  Identities=16%  Similarity=0.192  Sum_probs=47.1

Q ss_pred             chhhhcCC-CCCCCCeEEecCCCHHHHHHHHHhhhcce--------------EEecCCcHHHHHHHHHhcCc
Q psy1847           2 EDESLFTE-HFDKHPIIILKDIKFTELQSMIDYMYEGE--------------VNISQDQLPSFLKAAASIQL   58 (86)
Q Consensus         2 YFr~mF~~-~e~~~~~V~L~~vs~~~l~~lL~f~YTG~--------------l~i~~~~v~~ll~aA~~Lqi   58 (86)
                      ++|.||.. -+.....|.|++|+..+|+.+++|+|..+              -.++.+.+-+|+.||++|+|
T Consensus        28 ~ik~ml~~~~e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w~vd~~~lfeLi~AAnyLdI   99 (99)
T 1hv2_A           28 TLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYLSI   99 (99)
T ss_dssp             HHHHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCCCCCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHhcccccCCCceecCCcCHHHHHHHHHHHHHhcccCCCccccccCCCccCCHHHHHHHHHHHHHhCc
Confidence            57888876 22334689999999999999999999876              25677889999999999986

>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}

Probab=97.90  E-value=2.5e-05  Score=47.66  Aligned_cols=66  Identities=20%  Similarity=0.237  Sum_probs=52.2

Q ss_pred             chhhhcCCC------CCCCCeEEecCCCHHHHHHHHHhhhcceEEecCC-cHHHHHHHHHhcCcccHHhhhhcC
Q psy1847           2 EDESLFTEH------FDKHPIIILKDIKFTELQSMIDYMYEGEVNISQD-QLPSFLKAAASIQLKGLTQNVKAE   68 (86)
Q Consensus         2 YFr~mF~~~------e~~~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~-~v~~ll~aA~~Lqi~~l~~~c~~~   68 (86)
                      +|.+||...      ......+.| |-++..|+.||+|+.+|++.++.+ ....+++-|.++++++|++.|.+.
T Consensus        31 ~L~~~~~~~~~~~~~~d~~~~~fi-DRdp~~F~~IL~~lr~g~l~~p~~~~~~~l~~Ea~fy~l~~L~~~l~~~  103 (107)
T 3drz_A           31 FLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEFYNITSLIKLVKDK  103 (107)
T ss_dssp             HHHHHHTTCGGGGGGBCTTSCEEE-CSCHHHHHHHHHHHHHSCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             chhHHHhcCCCCCcCCCCCceEEe-cCChHHHHHHHHHhCCCeeCCCCCCCHHHHHHHHHHCCCHHHHHHHHHH
Confidence            466777652      113345665 789999999999999999988654 468899999999999999999753

>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1

Probab=97.69  E-value=3.2e-05  Score=47.81  Aligned_cols=57  Identities=12%  Similarity=0.096  Sum_probs=45.2

Q ss_pred             chhhhcCCC----CCCCCeEEecCCCHHHHHHHHHhhhcceE-----------EecCCcHHHHHHHHHhcCc
Q psy1847           2 EDESLFTEH----FDKHPIIILKDIKFTELQSMIDYMYEGEV-----------NISQDQLPSFLKAAASIQL   58 (86)
Q Consensus         2 YFr~mF~~~----e~~~~~V~L~~vs~~~l~~lL~f~YTG~l-----------~i~~~~v~~ll~aA~~Lqi   58 (86)
                      .+|.|+...    +.....|.|++|+..+|+.+++|++..+-           .++.+.+-+|+.||++|+|
T Consensus        41 tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~i~~w~vd~~~lfeLi~AAnyLdI  112 (112)
T 1vcb_B           41 TIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC  112 (112)
T ss_dssp             HHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHSSCSSCCCCCCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhccCCcCCCCCcccCHHHHHHHHHHHHHhCc
Confidence            467788752    23346899999999999999999988762           5778899999999999986

>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A

Probab=96.64  E-value=0.0024  Score=43.27  Aligned_cols=67  Identities=19%  Similarity=0.228  Sum_probs=51.4

Q ss_pred             chhhhcCCCC------CCCCeEEecCCCHHHHHHHHHhhhcceEEecCC-cHHHHHHHHHhcCcccHHhhhhcCC
Q psy1847           2 EDESLFTEHF------DKHPIIILKDIKFTELQSMIDYMYEGEVNISQD-QLPSFLKAAASIQLKGLTQNVKAET   69 (86)
Q Consensus         2 YFr~mF~~~e------~~~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~-~v~~ll~aA~~Lqi~~l~~~c~~~~   69 (86)
                      +|..||....      .....+.| |-++..|+.||+|+-+|++.++.+ ....+++-|.+++|.+|++.|.+.+
T Consensus        37 ~L~~lfs~~~~~~~~~De~geyFI-DRDP~~F~~ILnyLRtG~L~lP~~~~~~~l~eEA~FygL~~Lv~~l~~~i  110 (202)
T 3drx_A           37 FLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEFYNITSLIKLVKDKI  110 (202)
T ss_dssp             STHHHHSCCCC----BCTTCCEEE-CSCSTTHHHHHHHHHHSCCCCCTTSCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHhcCccccCcccCCCccEEe-cCChHHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHCCcHHHHHHHHHHH
Confidence            4566776521      12345555 678999999999999999988554 4578999999999999999995544

>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2

Probab=95.94  E-value=0.0089  Score=37.33  Aligned_cols=52  Identities=6%  Similarity=0.082  Sum_probs=42.6

Q ss_pred             CCeEEecCCCHHHHHHHHHhhhcceEEecCC-cHHHHHHHHHhcCcccH-Hhhhh
Q psy1847          14 HPIIILKDIKFTELQSMIDYMYEGEVNISQD-QLPSFLKAAASIQLKGL-TQNVK   66 (86)
Q Consensus        14 ~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~-~v~~ll~aA~~Lqi~~l-~~~c~   66 (86)
                      ...+.| |=++..|+.||+|+-+|++.++.+ .+..+++-|.+++|..+ .+.||
T Consensus        52 ~g~~Fi-DRdp~~F~~ILnflR~G~l~~p~~~~~~~l~~Ea~fy~i~~l~l~~cC  105 (124)
T 1s1g_A           52 TKEYFF-DRDPEVFRCVLNFYRTGKLHYPRYECISAYDDELAFYGILPEIIGDCC  105 (124)
T ss_dssp             SCSEEE-CSCHHHHHHHHHHHHHSCBCCCTTSCHHHHHHHHHHTTCCGGGBCHHH
T ss_pred             CCcEEE-cCChHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHcCCChHHHHHHH
Confidence            345555 559999999999999999987654 58999999999999887 46664

>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A

Probab=95.48  E-value=0.014  Score=37.20  Aligned_cols=52  Identities=6%  Similarity=0.082  Sum_probs=42.6

Q ss_pred             CCeEEecCCCHHHHHHHHHhhhcceEEecCC-cHHHHHHHHHhcCcccH-Hhhhh
Q psy1847          14 HPIIILKDIKFTELQSMIDYMYEGEVNISQD-QLPSFLKAAASIQLKGL-TQNVK   66 (86)
Q Consensus        14 ~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~-~v~~ll~aA~~Lqi~~l-~~~c~   66 (86)
                      ...+.| |=++..|+.||+|+-+|++.++.+ .+..+++-|.+++|..+ .+.|+
T Consensus        74 ~g~yFi-DRdp~~F~~ILnflR~G~l~~p~~~~~~~l~eEa~fy~i~~l~l~~CC  127 (140)
T 2nz0_B           74 TKEYFF-DRDPEVFRCVLNFYRTGKLHYPRYECISAYDDELAFYGILPEIIGDCC  127 (140)
T ss_dssp             TTEEEE-CSCHHHHHHHHHHHHHSSBCCCTTSCHHHHHHHHHHHTCCGGGBCTTT
T ss_pred             CCeEEE-eCCcHHHHHHHHHHhcCCcCCCCCcCHHHHHHHHHHcCCChHHHHHHH
Confidence            345555 559999999999999999987654 58999999999999887 56664

>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2

Probab=95.28  E-value=0.0077  Score=36.47  Aligned_cols=51  Identities=8%  Similarity=0.137  Sum_probs=41.5

Q ss_pred             CeEEecCCCHHHHHHHHHhhhcceEEecCC-cHHHHHHHHHhcCcccH-Hhhhh
Q psy1847          15 PIIILKDIKFTELQSMIDYMYEGEVNISQD-QLPSFLKAAASIQLKGL-TQNVK   66 (86)
Q Consensus        15 ~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~-~v~~ll~aA~~Lqi~~l-~~~c~   66 (86)
                      ..+.| |=++..|+.||+|+-+|++.++.+ .+..+++-|.+++|+.+ .+.|+
T Consensus        40 ~~~Fi-DRdp~~F~~ILnflR~g~l~~p~~~~~~~l~~Ea~fy~i~~l~~~~cc   92 (105)
T 1nn7_A           40 QQYFF-DRDPDIFRHILNFYRTGKLHYPRHECISAYDEELAFFGLIPEIIGDCC   92 (105)
T ss_dssp             TEEEE-CSCTTTHHHHHHHHHHSCBCCCTTSCHHHHHHHHHHHTCCSCCBCHHH
T ss_pred             CcEEE-eCCcHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHcCCCHHHHHHHH
Confidence            45555 458899999999999999987654 58899999999999886 46664

>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2

Probab=94.44  E-value=0.027  Score=34.60  Aligned_cols=52  Identities=15%  Similarity=0.143  Sum_probs=41.8

Q ss_pred             CCeEEecCCCHHHHHHHHHhhhcceEEecCC-cHHHHHHHHHhcCcccH-Hhhhh
Q psy1847          14 HPIIILKDIKFTELQSMIDYMYEGEVNISQD-QLPSFLKAAASIQLKGL-TQNVK   66 (86)
Q Consensus        14 ~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~-~v~~ll~aA~~Lqi~~l-~~~c~   66 (86)
                      ...+.| |=++..|+.||+|+-+|++.++.+ .+..+++-|.+++|... .+.||
T Consensus        45 ~g~~Fi-DRdp~~F~~ILnylR~G~l~~p~~~~~~~~~~Ea~fy~i~~~~l~~CC   98 (115)
T 3kvt_A           45 LNEYFF-DRHPGVFAQIINYYRSGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCC   98 (115)
T ss_dssp             TTEEEE-CSCTTTHHHHHHHHHHSCBCCCSSSCHHHHHHHHHHHTCCGGGBCGGG
T ss_pred             CCcEEE-ecChHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHhCCChHHHHHHH
Confidence            455665 578899999999999999988764 57899999999999665 34454

>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A

Probab=93.37  E-value=0.12  Score=30.92  Aligned_cols=52  Identities=10%  Similarity=0.086  Sum_probs=41.1

Q ss_pred             CCCeEEecCCCHHHHHHHHHhhhc-ceEEecC-CcHHHHHHHHHhcCcccH-Hhhh
Q psy1847          13 KHPIIILKDIKFTELQSMIDYMYE-GEVNISQ-DQLPSFLKAAASIQLKGL-TQNV   65 (86)
Q Consensus        13 ~~~~V~L~~vs~~~l~~lL~f~YT-G~l~i~~-~~v~~ll~aA~~Lqi~~l-~~~c   65 (86)
                      ....+.| |=++..|+.||+|+-| |++.++. -.+..+++-|.+++|..+ .+.|
T Consensus        40 ~~~eyFi-DRdp~~F~~ILnflR~~G~l~~p~~~~~~~~~~Ea~fy~i~~~~~~~~   94 (100)
T 1t1d_A           40 LRNEYFF-DRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEEIKFYELGENAFERY   94 (100)
T ss_dssp             TTTEEEE-CSCSTTHHHHHHHHHTTSCCCCCTTSCHHHHHHHHHHTTCCHHHHHHH
T ss_pred             CceeEEE-cCChHHHHHHHHHHhcCCcccCCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence            3456666 6689999999999999 9998754 457889999999999764 4444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	86
d1buoa_	121	d.42.1.1 (A:) Promyelocytic leukaemia zinc finger	2e-06
d1r29a_	122	d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB	6e-06

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (94), Expect = 2e-06
 Identities = 9/54 (16%), Positives = 20/54 (37%)

Query: 10  HFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQ 63
                    L  +     Q +++Y Y   +    + L   L AA  ++++ L +
Sbjct: 58  FHRNSQHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEE 111

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (91), Expect = 6e-06
 Identities = 11/63 (17%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 3   DESLFTEHFDKH--PIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKG 60
             S+FT+   ++   I +  +I       ++D+MY   +N+ +  + + +  A  +Q++ 
Sbjct: 51  FYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEH 110

Query: 61  LTQ 63
           +  
Sbjct: 111 VVD 113

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	86
d1r29a_	122	B-cell lymphoma 6 (Bcl6) protein BTB domain {Human	99.62
d1buoa_	121	Promyelocytic leukaemia zinc finger (PLZF) protein	99.6
d2c9wc1	96	Elongin C {Human (Homo sapiens) [TaxId: 9606]}	97.28
d1hv2a_	99	Elongin C {Baker's yeast (Saccharomyces cerevisiae	97.06
d3kvta_	103	akv3.1 voltage-gated potassium channel {California	96.49
d1nn7a_	105	Potassium channel kv4.2 {Rat (Rattus norvegicus) [	94.17
d1fs1b1	55	Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa	93.57
d1nexa1	70	Centromere DNA-binding protein complex Cbf3 subuni	92.59
d1nexa2	72	Centromere DNA-binding protein complex Cbf3 subuni	90.51
d1t1da_	100	Shaker potassium channel {California sea hare (Apl	89.29
d1fs1b2	61	Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa	85.73

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.9e-16  Score=97.79  Aligned_cols=66  Identities=17%  Similarity=0.318  Sum_probs=59.4

Q ss_pred             chhhhcCC--CCCCCCeEEecCCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhhhc
Q psy1847           2 EDESLFTE--HFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVKA   67 (86)
Q Consensus         2 YFr~mF~~--~e~~~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c~~   67 (86)
                      |||+||.+  .+.....+.++++++++++.+|+|+|||++.++.+++.+++.+|++|+++++++.|.+
T Consensus        50 ~F~~~f~~~~~e~~~~~~~~~~v~~~~f~~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~~L~~~C~~  117 (122)
T d1r29a_          50 LFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRK  117 (122)
T ss_dssp             HHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHhccchhhhcceeeeecccCHHHHHHHHhhhcCCeecCchhhHHHHHHHHHHHCcHHHHHHHHH
Confidence            89999988  3444455667899999999999999999999999999999999999999999999964

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=4.3e-16  Score=96.54  Aligned_cols=63  Identities=19%  Similarity=0.293  Sum_probs=59.1

Q ss_pred             chhhhcCCCCCCCCeEEecCCCHHHHHHHHHhhhcceEEecCCcHHHHHHHHHhcCcccHHhhhhc
Q psy1847           2 EDESLFTEHFDKHPIIILKDIKFTELQSMIDYMYEGEVNISQDQLPSFLKAAASIQLKGLTQNVKA   67 (86)
Q Consensus         2 YFr~mF~~~e~~~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~~v~~ll~aA~~Lqi~~l~~~c~~   67 (86)
                      ||++||.+.   ..++.++++++++++.+|+|+|||++.++.+++.+++.+|++|+++++++.|.+
T Consensus        53 ~F~~lf~~~---~~~i~~~~v~~~~f~~ll~~~Ytg~i~l~~~~v~~ll~~A~~l~~~~L~~~C~~  115 (121)
T d1buoa_          53 MFEILFHRN---SQHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLK  115 (121)
T ss_dssp             HHHHHTTSC---CSEEEECSSCHHHHHHHHHHHHHSCCCCCGGGHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             hhhhhccCc---cceeecCCCCHHHHHHHHHheEccccCCcHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            899999764   357999999999999999999999999999999999999999999999999965

>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=0.00012  Score=42.44  Aligned_cols=55  Identities=15%  Similarity=0.182  Sum_probs=38.0

Q ss_pred             hhhhcCC----CCCCCCeEEecCCCHHHHHHHHHhhh-----cc------eEEecCCcHHHHHHHHHhcC
Q psy1847           3 DESLFTE----HFDKHPIIILKDIKFTELQSMIDYMY-----EG------EVNISQDQLPSFLKAAASIQ   57 (86)
Q Consensus         3 Fr~mF~~----~e~~~~~V~L~~vs~~~l~~lL~f~Y-----TG------~l~i~~~~v~~ll~aA~~Lq   57 (86)
                      +|.||.+    .+.....|.|++|+...|+.+++|++     .+      ...|..+.+-+|+.||++|+
T Consensus        26 I~~ml~~~~~~~e~~~~~IpL~nV~s~iL~kViey~~~h~~~~~~~~~~~~fdi~~~~l~eLi~AAnyLd   95 (96)
T d2c9wc1          26 IKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLD   95 (96)
T ss_dssp             HHHC------------CEEECTTCCHHHHHHHHHHHHHHHHTC----CCCCCCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHhccCccccCCCCeeECCCCCHHHHHHHHHHHHhhccCcCCcCCCCCCcCCHHHHHHHHHHHhhhc
Confidence            5677755    23456789999999999999999995     22      12466677889999999986

>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.06  E-value=0.0004  Score=40.27  Aligned_cols=56  Identities=18%  Similarity=0.228  Sum_probs=41.9

Q ss_pred             hhhhcCCC-CCCCCeEEecCCCHHHHHHHHHhhhcc--------------eEEecCCcHHHHHHHHHhcCc
Q psy1847           3 DESLFTEH-FDKHPIIILKDIKFTELQSMIDYMYEG--------------EVNISQDQLPSFLKAAASIQL   58 (86)
Q Consensus         3 Fr~mF~~~-e~~~~~V~L~~vs~~~l~~lL~f~YTG--------------~l~i~~~~v~~ll~aA~~Lqi   58 (86)
                      +|.|+.+. ......|.+++|+...|+.+++|++-.              +-.+..+.+-+|+.||++|+|
T Consensus        29 I~~ml~~~~~e~~~~Ipl~~V~s~iL~kViey~~~h~~~~~~~~~~~~~~efdvd~~~l~eLi~AAnyLdI   99 (99)
T d1hv2a_          29 LKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYLSI   99 (99)
T ss_dssp             HHHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCCCCCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHccCCCCcCccccCCCChHHHHHHHHHHHHhhhCcCcccccccCCCCCCCHHHHHHHHHHHhhhCC
Confidence            45666552 234567999999999999999999622              234455668889999999986

>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: akv3.1 voltage-gated potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

Probab=96.49  E-value=0.0012  Score=38.53  Aligned_cols=53  Identities=15%  Similarity=0.127  Sum_probs=43.7

Q ss_pred             CCeEEecCCCHHHHHHHHHhhhcceEEecCC-cHHHHHHHHHhcCcc-cHHhhhhc
Q psy1847          14 HPIIILKDIKFTELQSMIDYMYEGEVNISQD-QLPSFLKAAASIQLK-GLTQNVKA   67 (86)
Q Consensus        14 ~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~-~v~~ll~aA~~Lqi~-~l~~~c~~   67 (86)
                      ...+.| |=++..|+.||+|+-+|++.++.+ .+..+++-|.+++|+ .+.+.|+.
T Consensus        42 ~~~~fi-DRdp~~F~~IL~ylR~g~l~~p~~~~~~~l~~Ea~yygi~~~~l~~Cc~   96 (103)
T d3kvta_          42 LNEYFF-DRHPGVFAQIINYYRSGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCW   96 (103)
T ss_dssp             TTEEEE-CSCTTTHHHHHHHHHHSCBCCCSSSCHHHHHHHHHHHTCCGGGBCGGGS
T ss_pred             CCcEEe-cCCHHHHHHHHHHHccCCcccccccCHHHHHHHHHHcCCCHHHHHHHhH
Confidence            445666 789999999999999999988654 577899999999996 56788864

>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Potassium channel kv4.2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.17  E-value=0.011  Score=34.26  Aligned_cols=52  Identities=6%  Similarity=0.105  Sum_probs=39.7

Q ss_pred             CCeEEecCCCHHHHHHHHHhhhcceEEecCC-cHHHHHHHHHhcCcccH-Hhhhh
Q psy1847          14 HPIIILKDIKFTELQSMIDYMYEGEVNISQD-QLPSFLKAAASIQLKGL-TQNVK   66 (86)
Q Consensus        14 ~~~V~L~~vs~~~l~~lL~f~YTG~l~i~~~-~v~~ll~aA~~Lqi~~l-~~~c~   66 (86)
                      ...+.|. =++..|+.||+|+-+|++.++++ ....+++-|.+++|+.+ .+.|+
T Consensus        39 ~~~~FiD-Rdp~~F~~IL~ylR~G~l~~p~~~~~~~l~~Ea~fygi~~~~l~~cc   92 (105)
T d1nn7a_          39 TQQYFFD-RDPDIFRHILNFYRTGKLHYPRHECISAYDEELAFFGLIPEIIGDCC   92 (105)
T ss_dssp             GTEEEEC-SCTTTHHHHHHHHHHSCBCCCTTSCHHHHHHHHHHHTCCSCCBCHHH
T ss_pred             CCcEEEe-CCHHHHHHHHHHHhcCccccCCCccHHHHHHHHHHcCCCHHHHHHHH
Confidence            3455544 48889999999999999987654 47889999999999653 44443

>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.57  E-value=0.0076  Score=31.46  Aligned_cols=30  Identities=23%  Similarity=0.305  Sum_probs=25.6

Q ss_pred             EecCCcHHHHHHHHHhcCcccHHhhhhcCC
Q psy1847          40 NISQDQLPSFLKAAASIQLKGLTQNVKAET   69 (86)
Q Consensus        40 ~i~~~~v~~ll~aA~~Lqi~~l~~~c~~~~   69 (86)
                      .+..+.+-+++.||++|+|++|.+.|+..+
T Consensus         9 ~~d~~~Lf~Li~AAnyL~I~~Lldl~c~~v   38 (55)
T d1fs1b1           9 KVDQGTLFELILAANYLDIKGLLDVTCKTV   38 (55)
T ss_dssp             CSCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HcCHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence            466778899999999999999999997543

>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.59  E-value=0.013  Score=31.91  Aligned_cols=30  Identities=20%  Similarity=0.191  Sum_probs=25.8

Q ss_pred             EecCCcHHHHHHHHHhcCcccHHhhhhcCC
Q psy1847          40 NISQDQLPSFLKAAASIQLKGLTQNVKAET   69 (86)
Q Consensus        40 ~i~~~~v~~ll~aA~~Lqi~~l~~~c~~~~   69 (86)
                      .+..+.+-+++.||++|+|++|.+.|+..+
T Consensus        10 ~~d~~~L~~li~AAnyL~I~~Ll~l~c~~v   39 (70)
T d1nexa1          10 KVDQEMLYEIILAANYLNIKPLLDAGCKVV   39 (70)
T ss_dssp             CSCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence            366788999999999999999999996543

>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.51  E-value=0.15  Score=27.28  Aligned_cols=24  Identities=13%  Similarity=0.328  Sum_probs=20.3

Q ss_pred             CCCeEEecCCCHHHHHHHHHhhhc
Q psy1847          13 KHPIIILKDIKFTELQSMIDYMYE   36 (86)
Q Consensus        13 ~~~~V~L~~vs~~~l~~lL~f~YT   36 (86)
                      ....|.|++|+..+|+.+++|++-
T Consensus        42 ~~~~Ipl~~V~s~iL~kVieyc~~   65 (72)
T d1nexa2          42 DEIVMPVPNVRSSVLQKVIEWAEH   65 (72)
T ss_dssp             --CEEECTTCCHHHHHHHHHHHHH
T ss_pred             CCCcccCCCcCHHHHHHHHHHHHH
Confidence            345799999999999999999975

>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Shaker potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

Probab=89.29  E-value=0.3  Score=27.67  Aligned_cols=48  Identities=10%  Similarity=0.101  Sum_probs=37.0

Q ss_pred             CCCeEEecCCCHHHHHHHHHhhhcc-eEEecC-CcHHHHHHHHHhcCcccH
Q psy1847          13 KHPIIILKDIKFTELQSMIDYMYEG-EVNISQ-DQLPSFLKAAASIQLKGL   61 (86)
Q Consensus        13 ~~~~V~L~~vs~~~l~~lL~f~YTG-~l~i~~-~~v~~ll~aA~~Lqi~~l   61 (86)
                      ....+.| |=++..|+.||+|+-|| .+..+. ..+..+++-|.+++|...
T Consensus        40 ~~g~~Fi-DRdp~~F~~IL~flR~~~~l~~~~~~~~~~l~~Ea~y~gi~~~   89 (100)
T d1t1da_          40 LRNEYFF-DRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEEIKFYELGEN   89 (100)
T ss_dssp             TTTEEEE-CSCSTTHHHHHHHHHTTSCCCCCTTSCHHHHHHHHHHTTCCHH
T ss_pred             CCCeEEE-ecCHHHHHHHHHHHhcCCCcCCCCcccHHHHHHHHHHcCCCHH
Confidence            4456777 55899999999999884 555544 447889999999999763

>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.73  E-value=0.34  Score=25.04  Aligned_cols=23  Identities=13%  Similarity=0.216  Sum_probs=20.4

Q ss_pred             CCeEEecCCCHHHHHHHHHhhhc
Q psy1847          14 HPIIILKDIKFTELQSMIDYMYE   36 (86)
Q Consensus        14 ~~~V~L~~vs~~~l~~lL~f~YT   36 (86)
                      ...|.|++|+...|+.+++|++-
T Consensus        35 ~~~Ipl~~V~s~iL~kVieyc~~   57 (61)
T d1fs1b2          35 MDPVPLPNVNAAILKKVIQWCTH   57 (61)
T ss_dssp             CSSEECTTCCHHHHHHHHHHHHH
T ss_pred             CCCcccCCcCHHHHHHHHHHHHH
Confidence            34699999999999999999975