Psyllid ID: psy189

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-
Protein Sequence
MSWIGSLEGSAFAMFPRDQQTLPNHFYFTDYERHNSEIATFHLDRISMLLKKQWIGFFFLLILHQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQFDTHQFVTLVEGTYVVCFSNEFSTYSSALEVISTHAAVAVESES
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccccEEEEEEcccccEEEEEEEEEEcccccEEEEEEcccccEEEEEEEccccEEEEEEEccEEEEEEEEccccccccEEEEEEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccEEEcccccHHHccccccccccccEEEccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccHcEHcEcccccEEEEEEEEEEcccEEEEEEEEcccccEEEEEEEEEccEEEEEEEEcEEEEEEEcccccccccccccccccEEEEEcccc
Coil and Loop (DISEMBL)
mswigslegsafamfprdqqtlpnhfyftdyerhnseiATFHLDRISMLLKKQWIGFFFLLILHQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVvtggkydvdvsieaptKEIIYRQVKSQFDTHQFVTLVEGTYVVCFSNEFSTYSSALEVISTHAAVAVESES
Flexible Loop (DISEMBL)
mswigsleGSAFAMFPRDQQTLPNHFYFTDYERHNSEIATFHLDRISMLLKKQWIGFFFLLILHQIVQAVELTFELADNARECFFEDIKRNTSVILEFqvvtggkydvdvSIEAPTKEIIYRQVKSQFDTHQFVTLVEGTYVVCFSNEFSTYSSALEVISTHAAVAVESES
Low Complexity Region (SEG)
MSWIGSLEGSAFAMFPRDQQTLPNHFYFTDYERHNSEIATFHLDRISMLLKKQWIGFFFLLILHQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQFDTHQFVTLVEGTYVVCFSNEFSTYSSALEVISTHAAVAVESES
Disordered region (IsUnstruct)
**********AFAMFPRDQQTLPNHFYFTDYERHNSEIATFHLDRISMLLKKQWIGFFFLLILHQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQFDTHQFVTLVEGTYVVCFSNEFSTYSSALEVISTHAAV******
Disordered Region (DISOPRED)
*****************DQQTLPNHFYFTDYERHNSEIATFHLDRISMLLKKQWIGFFFLLILHQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQFDTHQFVTLVEGTYVVCFSNEFSTYSSALEVISTHAAVAVE***
Disordered Region (DISEMBL)
MSWIGSLEGSAFAMFPRDQQTLPNHFYFTDYERHNSEIATFHLDRISMLLKKQWIGFFFLLILHQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQFDTHQFVTLVEGTYVVCFSNEFSTYSSALEVISTHAAVAVESES
Disordered Region (DISPRO)
*SWI*SLEGSAFAMFPRDQQTLPNHFYFTDYERHNSEIATFHLDRISMLLKKQWIGFFFLLILHQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQFDTHQFVTLVEGTYVVCFSNEFSTYSSALEVISTHAAVAVE***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSWIGSLEGSAFAMFPRDQQTLPNHFYFTDYERHNSEIATFHLDRISMLLKKQWIGFFFLLILHQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQFDTHQFVTLVEGTYVVCFSNEFSTYSSALEVISTHAAVAVESES
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	171	2.2.26 [Sep-21-2011]
Q9Y3B3	224	Transmembrane emp24 domai	no	N/A	0.497	0.379	0.529	6e-23
D3ZTX0	226	Transmembrane emp24 domai	yes	N/A	0.485	0.367	0.530	1e-22
Q6AY25	221	Transmembrane emp24 domai	no	N/A	0.508	0.393	0.505	2e-21
Q78IS1	221	Transmembrane emp24 domai	no	N/A	0.520	0.402	0.471	7e-21
Q9Y3Q3	217	Transmembrane emp24 domai	no	N/A	0.497	0.391	0.494	6e-20
Q28BQ6	220	Transmembrane emp24 domai	no	N/A	0.520	0.404	0.348	3e-09
Q63524	201	Transmembrane emp24 domai	no	N/A	0.456	0.388	0.371	3e-09
Q15363	201	Transmembrane emp24 domai	no	N/A	0.456	0.388	0.371	3e-09
Q9R0Q3	201	Transmembrane emp24 domai	no	N/A	0.456	0.388	0.371	3e-09
P49020	196	Transmembrane emp24 domai	no	N/A	0.456	0.397	0.371	3e-09

>sp|Q9Y3B3|TMED7_HUMAN Transmembrane emp24 domain-containing protein 7 OS=Homo sapiens GN=TMED7 PE=1 SV=2

 Score =  106 bits (265), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 45/85 (52%), Positives = 62/85 (72%)

Query: 69  AVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQF 128
           A E+TFEL DNA++CF+EDI + T   LEFQV+TGG YDVD  +E P  +++Y+++K Q+
Sbjct: 34  ASEITFELPDNAKQCFYEDIAQGTKCTLEFQVITGGHYDVDCRLEDPDGKVLYKEMKKQY 93

Query: 129 DTHQFVTLVEGTYVVCFSNEFSTYS 153
           D+  F     GTY  CFSNEFST++
Sbjct: 94  DSFTFTASKNGTYKFCFSNEFSTFT 118

Potential role in vesicular protein trafficking, mainly in the early secretory pathway. Appears to play a role in the biosynthesis of secreted cargo including processing and post-translational modifications.
Homo sapiens (taxid: 9606)

>sp|D3ZTX0|TMED7_RAT Transmembrane emp24 domain-containing protein 7 OS=Rattus norvegicus GN=Tmed7 PE=1 SV=1

 Score =  105 bits (262), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 44/83 (53%), Positives = 61/83 (73%)

Query: 71  ELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQFDT 130
           E+TFEL DNA++CF+EDI + T   LEFQV+TGG YDVD  +E P  +++Y+++K Q+D+
Sbjct: 38  EITFELPDNAKQCFYEDITQGTKCTLEFQVITGGHYDVDCRLEDPDGKVLYKEMKKQYDS 97

Query: 131 HQFVTLVEGTYVVCFSNEFSTYS 153
             F     GTY  CFSNEFST++
Sbjct: 98  FTFTASKNGTYKFCFSNEFSTFT 120

Potential role in vesicular protein trafficking, mainly in the early secretory pathway. Appears to play a role in the biosynthesis of secreted cargo including processing and post-translational modifications.

Rattus norvegicus (taxid: 10116)

>sp|Q6AY25|TMED3_RAT Transmembrane emp24 domain-containing protein 3 OS=Rattus norvegicus GN=Tmed3 PE=1 SV=1

 Score =  101 bits (252), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 44/87 (50%), Positives = 62/87 (71%)

Query: 67  VQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKS 126
           ++  ELTFEL DNA++CF E++++     L++QV+TGG YDVD  +E P   IIYR+ K 
Sbjct: 28  LRGAELTFELPDNAKQCFHEEVEQGVKFSLDYQVITGGHYDVDCYVEDPMGNIIYRETKK 87

Query: 127 QFDTHQFVTLVEGTYVVCFSNEFSTYS 153
           Q+D+  + T V+G Y  CFSNEFST+S
Sbjct: 88  QYDSFTYKTEVKGVYRFCFSNEFSTFS 114

Potential role in vesicular protein trafficking, mainly in the early secretory pathway. Contributes to the coupled localization of TMED2 and TMED10 in the cis-Golgi network.

Rattus norvegicus (taxid: 10116)

>sp|Q78IS1|TMED3_MOUSE Transmembrane emp24 domain-containing protein 3 OS=Mus musculus GN=Tmed3 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 42/89 (47%), Positives = 63/89 (70%)

Query: 65  QIVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQV 124
           + +++ ELTFEL DNA++CF E++++     L++QV+TGG YDVD  +E P   +IYR+ 
Sbjct: 26  EPLRSAELTFELPDNAKQCFHEEVEQGVKFSLDYQVITGGHYDVDCYVEDPRGNVIYRET 85

Query: 125 KSQFDTHQFVTLVEGTYVVCFSNEFSTYS 153
           K Q+D+  + T  +G Y  CFSNEFST+S
Sbjct: 86  KKQYDSFTYKTEAKGVYRFCFSNEFSTFS 114

Potential role in vesicular protein trafficking, mainly in the early secretory pathway. Contributes to the coupled localization of TMED2 and TMED10 in the cis-Golgi network.

Mus musculus (taxid: 10090)

>sp|Q9Y3Q3|TMED3_HUMAN Transmembrane emp24 domain-containing protein 3 OS=Homo sapiens GN=TMED3 PE=1 SV=1

 Score = 97.1 bits (240), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 42/85 (49%), Positives = 58/85 (68%)

Query: 69  AVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQF 128
             ELTFEL DNA++CF E++++     L++QV+TGG YDVD  +E P    IYR+ K Q+
Sbjct: 26  GAELTFELPDNAKQCFHEEVEQGVKFSLDYQVITGGHYDVDCYVEDPQGNTIYRETKKQY 85

Query: 129 DTHQFVTLVEGTYVVCFSNEFSTYS 153
           D+  +   V+G Y  CFSNEFST+S
Sbjct: 86  DSFTYRAEVKGVYQFCFSNEFSTFS 110

Potential role in vesicular protein trafficking, mainly in the early secretory pathway. Contributes to the coupled localization of TMED2 and TMED10 in the cis-Golgi network.

Homo sapiens (taxid: 9606)

>sp|Q28BQ6|TMED1_XENTR Transmembrane emp24 domain-containing protein 1 OS=Xenopus tropicalis GN=tmed1 PE=2 SV=1

 Score = 61.6 bits (148), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 46/89 (51%)

Query: 68  QAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQ 127
           Q  ELTF L    +ECF++    N S+ +E+QV+ G   DVD S+  P+  ++  + +  
Sbjct: 23  QDTELTFLLPAGRQECFYQTTLYNGSMEIEYQVIGGAGLDVDFSVTTPSGILLIMERRRS 82

Query: 128 FDTHQFVTLVEGTYVVCFSNEFSTYSSAL 156
              H       G Y++CF N FST S  L
Sbjct: 83  DGVHTVEPTEAGDYMICFDNSFSTISEKL 111

Potential role in vesicular protein trafficking, mainly in the early secretory pathway. May act as a cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and may be involved in vesicle coat formation at the cytoplasmic side.

Xenopus tropicalis (taxid: 8364)

>sp|Q63524|TMED2_RAT Transmembrane emp24 domain-containing protein 2 OS=Rattus norvegicus GN=Tmed2 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 42/78 (53%)

Query: 79  NARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQFDTHQFVTLVE 138
           +A ECFFE +   T + L F+V  GG  D+DV I  P  + IY+  +     + F   ++
Sbjct: 28  HAEECFFERVTSGTKMGLIFEVAEGGFLDIDVEITGPDNKGIYKGDRESSGKYTFAAHMD 87

Query: 139 GTYVVCFSNEFSTYSSAL 156
           GTY  CFSN  ST +  +
Sbjct: 88  GTYKFCFSNRMSTMTPKI 105

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway but also in post-Golgi membranes. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side. In COPII vesicle-mediated anterograde transport involved in the transport of GPI-anchored proteins and proposed to act togther with TMED10 as their cargo receptor; the function specifically implies SEC24C and SEC24D of the COPII vesicle coat and lipid raft-like microdomains of the ER. Recognizes GPI anchors structural remodeled in the ER by PGAP1 and MPPE1. In COPI vesicle-mediated retrograde transport inhibits the GTPase-activating activity of ARFGAP1 towards ARF1 thus preventing immature uncoating and allowing cargo selection to take place. Involved in trafficking of G protein-coupled receptors (GPCRs). Regulates F2RL1, OPRM1 and P2RY4 exocytic trafficking from the Golgi to the plasma membrane thus contributing to receptor resensitization. Facilitates CASR maturation and stabilization in the early secretory pathway and increases CASR plasma membrane targeting. Proposed to be involved in organization of intracellular membranes such as the maintenance of the Golgi apparatus. May also play a role in the biosynthesis of secreted cargo such as eventual processing.

Rattus norvegicus (taxid: 10116)

>sp|Q15363|TMED2_HUMAN Transmembrane emp24 domain-containing protein 2 OS=Homo sapiens GN=TMED2 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 42/78 (53%)

Query: 79  NARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQFDTHQFVTLVE 138
           +A ECFFE +   T + L F+V  GG  D+DV I  P  + IY+  +     + F   ++
Sbjct: 28  HAEECFFERVTSGTKMGLIFEVAEGGFLDIDVEITGPDNKGIYKGDRESSGKYTFAAHMD 87

Query: 139 GTYVVCFSNEFSTYSSAL 156
           GTY  CFSN  ST +  +
Sbjct: 88  GTYKFCFSNRMSTMTPKI 105

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway but also in post-Golgi membranes. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side. In COPII vesicle-mediated anterograde transport involved in the transport of GPI-anchored proteins and proposed to act togther with TMED10 as their cargo receptor; the function specifically implies SEC24C and SEC24D of the COPII vesicle coat and lipid raft-like microdomains of the ER. Recognizes GPI anchors structural remodeled in the ER by PGAP1 and MPPE1. In COPI vesicle-mediated retrograde transport inhibits the GTPase-activating activity of ARFGAP1 towards ARF1 thus preventing immature uncoating and allowing cargo selection to take place. Involved in trafficking of G protein-coupled receptors (GPCRs). Regulates F2RL1, OPRM1 and P2RY4 exocytic trafficking from the Golgi to the plasma membrane thus contributing to receptor resensitization. Facilitates CASR maturation and stabilization in the early secretory pathway and increases CASR plasma membrane targeting. Proposed to be involved in organization of intracellular membranes such as the maintenance of the Golgi apparatus. May also play a role in the biosynthesis of secreted cargo such as eventual processing.

Homo sapiens (taxid: 9606)

>sp|Q9R0Q3|TMED2_MOUSE Transmembrane emp24 domain-containing protein 2 OS=Mus musculus GN=Tmed2 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 42/78 (53%)

Query: 79  NARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQFDTHQFVTLVE 138
           +A ECFFE +   T + L F+V  GG  D+DV I  P  + IY+  +     + F   ++
Sbjct: 28  HAEECFFERVTSGTKMGLIFEVAEGGFLDIDVEITGPDNKGIYKGDRESSGKYTFAAHMD 87

Query: 139 GTYVVCFSNEFSTYSSAL 156
           GTY  CFSN  ST +  +
Sbjct: 88  GTYKFCFSNRMSTMTPKI 105

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway but also in post-Golgi membranes. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side. In COPII vesicle-mediated anterograde transport involved in the transport of GPI-anchored proteins and proposed to act togther with TMED10 as their cargo receptor; the function specifically implies SEC24C and SEC24D of the COPII vesicle coat and lipid raft-like microdomains of the ER. Recognizes GPI anchors structural remodeled in the ER by PGAP1 and MPPE1. In COPI vesicle-mediated retrograde transport inhibits the GTPase-activating activity of ARFGAP1 towards ARF1 thus preventing immature uncoating and allowing cargo selection to take place. Involved in trafficking of G protein-coupled receptors (GPCRs). Regulates F2RL1, OPRM1 and P2RY4 exocytic trafficking from the Golgi to the plasma membrane thus contributing to receptor resensitization. Facilitates CASR maturation and stabilization in the early secretory pathway and increases CASR plasma membrane targeting. Proposed to be involved in organization of intracellular membranes such as the maintenance of the Golgi apparatus. May also play a role in the biosynthesis of secreted cargo such as eventual processing (By similarity). Required for morphogenesis of embryo and placenta.

Mus musculus (taxid: 10090)

>sp|P49020|TMED2_CRIGR Transmembrane emp24 domain-containing protein 2 (Fragment) OS=Cricetulus griseus GN=TMED2 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 42/78 (53%)

Query: 79  NARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQFDTHQFVTLVE 138
           +A ECFFE +   T + L F+V  GG  D+DV I  P  + IY+  +     + F   ++
Sbjct: 23  HAEECFFERVTSGTKMGLIFEVAEGGFLDIDVEITGPDNKGIYKGDRESSGKYTFAAHMD 82

Query: 139 GTYVVCFSNEFSTYSSAL 156
           GTY  CFSN  ST +  +
Sbjct: 83  GTYKFCFSNRMSTMTPKI 100

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway but also in post-Golgi membranes. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side. In COPII vesicle-mediated anterograde transport involved in the transport of GPI-anchored proteins and proposed to act togther with TMED10 as their cargo receptor; the function specifically implies SEC24C and SEC24D of the COPII vesicle coat and lipid raft-like microdomains of the ER. Recognizes GPI anchors structural remodeled in the ER by PGAP1 and MPPE1. In COPI vesicle-mediated retrograde transport inhibits the GTPase-activating activity of ARFGAP1 towards ARF1 thus preventing immature uncoating and allowing cargo selection to take place. Involved in trafficking of G protein-coupled receptors (GPCRs). Regulates F2RL1, OPRM1 and P2RY4 exocytic trafficking from the Golgi to the plasma membrane thus contributing to receptor resensitization. Facilitates CASR maturation and stabilization in the early secretory pathway and increases CASR plasma membrane targeting. Proposed to be involved in organization of intracellular membranes such as the maintenance of the Golgi apparatus. May also play a role in the biosynthesis of secreted cargo such as eventual processing.

Cricetulus griseus (taxid: 10029)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
193683384	216	PREDICTED: transmembrane emp24 domain-co	0.596	0.472	0.627	4e-32
328723942	216	PREDICTED: transmembrane emp24 domain-co	0.672	0.532	0.564	8e-32
170047167	216	transmembrane emp24 domain-containing pr	0.631	0.5	0.585	1e-31
94469222	219	membrane trafficking protein emp24/gp25/	0.590	0.461	0.621	3e-30
157130343	219	integral membrane protein, Tmp21-I (p23)	0.590	0.461	0.621	3e-30
307209893	682	CDK5 regulatory subunit-associated prote	0.514	0.129	0.681	7e-30
332030699	209	Transmembrane emp24 domain-containing pr	0.532	0.435	0.659	7e-30
118779227	224	AGAP000949-PA [Anopheles gambiae str. PE	0.538	0.410	0.638	1e-29
322795430	227	hypothetical protein SINV_05458 [Solenop	0.514	0.387	0.681	1e-29
380015045	674	PREDICTED: CDK5 regulatory subunit-assoc	0.596	0.151	0.567	3e-29

>gi|193683384|ref|XP_001943186.1| PREDICTED: transmembrane emp24 domain-containing protein 3-like [Acyrthosiphon pisum]

 Score =  142 bits (359), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 64/102 (62%), Positives = 82/102 (80%)

Query: 55  IGFFFLLILHQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEA 114
           IG  FL     +V+++ELTFEL D A++C++E+I++NTS  LE+QVVTGG+YDVDV IE+
Sbjct: 10  IGLLFLSYCICLVKSIELTFELQDKAKDCYYENIQKNTSTTLEYQVVTGGQYDVDVIIES 69

Query: 115 PTKEIIYRQVKSQFDTHQFVTLVEGTYVVCFSNEFSTYSSAL 156
           PTKEI+YRQVKSQFD+H FV  V G Y +CFSNEFST+S  L
Sbjct: 70  PTKEILYRQVKSQFDSHTFVAAVSGPYAICFSNEFSTFSHKL 111

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328723942|ref|XP_001949553.2| PREDICTED: transmembrane emp24 domain-containing protein 7-like [Acyrthosiphon pisum]

 Score =  141 bits (356), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 66/117 (56%), Positives = 87/117 (74%), Gaps = 2/117 (1%)

Query: 52  KQWIGFFFLLILHQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVS 111
           K  IG  FL     +V+ +ELTFEL D A++C++E+I++NTS  LE+QVVTGG+YDVDV 
Sbjct: 7   KSLIGLLFLSYGICLVKPIELTFELQDKAKDCYYENIQKNTSTTLEYQVVTGGQYDVDVI 66

Query: 112 IEAPTKEIIYRQVKSQFDTHQFVTLVEGTYVVCFSNEFSTYSSALEVISTHAAVAVE 168
           IE+PT+EI+YRQVKSQ D+H FV  V G Y +CFSNEFST+S   +++  H  V VE
Sbjct: 67  IESPTREILYRQVKSQLDSHTFVAAVSGPYAICFSNEFSTFSH--KIVYMHLQVGVE 121

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170047167|ref|XP_001851105.1| transmembrane emp24 domain-containing protein 7 [Culex quinquefasciatus] gi|167869668|gb|EDS33051.1| transmembrane emp24 domain-containing protein 7 [Culex quinquefasciatus]

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 65/111 (58%), Positives = 83/111 (74%), Gaps = 3/111 (2%)

Query: 49  LLKKQWIGFFFLLILHQ---IVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGK 105
           +++K   G F LL       +VQ+VEL+FEL DNARECF+E+IK+N +  LE+QVVTGG+
Sbjct: 1   MMEKLASGIFLLLFFGGPRILVQSVELSFELPDNARECFYEEIKKNQTATLEYQVVTGGQ 60

Query: 106 YDVDVSIEAPTKEIIYRQVKSQFDTHQFVTLVEGTYVVCFSNEFSTYSSAL 156
           YDVDV +E PTKEI+YRQ+K+QFD+HQF     G Y  CFSNEFST+S  L
Sbjct: 61  YDVDVVLEGPTKEILYRQIKTQFDSHQFTAQATGVYAACFSNEFSTFSHKL 111

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|94469222|gb|ABF18460.1| membrane trafficking protein emp24/gp25/p24 family member [Aedes aegypti]

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 64/103 (62%), Positives = 77/103 (74%), Gaps = 2/103 (1%)

Query: 56  GFFFLLIL--HQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIE 113
           G F L  L     V +VELTFEL DNARECFFE+IK+N +  LEFQVVTGG+YDVDV + 
Sbjct: 12  GVFLLAFLGHRSAVNSVELTFELPDNARECFFEEIKKNQTATLEFQVVTGGQYDVDVQLV 71

Query: 114 APTKEIIYRQVKSQFDTHQFVTLVEGTYVVCFSNEFSTYSSAL 156
           +PT+EI+Y+QVK+QFD+HQF     G Y  CFSNEFST+S  L
Sbjct: 72  SPTQEILYKQVKTQFDSHQFTAQATGVYAACFSNEFSTFSHKL 114

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157130343|ref|XP_001655671.1| integral membrane protein, Tmp21-I (p23), putative [Aedes aegypti] gi|157130345|ref|XP_001655672.1| integral membrane protein, Tmp21-I (p23), putative [Aedes aegypti] gi|108871923|gb|EAT36148.1| AAEL011755-PA [Aedes aegypti] gi|108871924|gb|EAT36149.1| AAEL011755-PB [Aedes aegypti]

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 64/103 (62%), Positives = 77/103 (74%), Gaps = 2/103 (1%)

Query: 56  GFFFLLIL--HQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIE 113
           G F L  L     V +VELTFEL DNARECFFE+IK+N +  LEFQVVTGG+YDVDV + 
Sbjct: 12  GVFLLAFLGHRSAVNSVELTFELPDNARECFFEEIKKNQTATLEFQVVTGGQYDVDVQLV 71

Query: 114 APTKEIIYRQVKSQFDTHQFVTLVEGTYVVCFSNEFSTYSSAL 156
           +PT+EI+Y+QVK+QFD+HQF     G Y  CFSNEFST+S  L
Sbjct: 72  SPTQEILYKQVKTQFDSHQFTAQATGIYAACFSNEFSTFSHKL 114

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307209893|gb|EFN86672.1| CDK5 regulatory subunit-associated protein 3 [Harpegnathos saltator]

 Score =  135 bits (339), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 60/88 (68%), Positives = 74/88 (84%)

Query: 69  AVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQF 128
            VELTFEL+D+A+ECF+++I++N S  LEFQVVTGG+YDVDV++EAP KEIIYRQVK+QF
Sbjct: 22  GVELTFELSDSAKECFYQEIEKNVSSTLEFQVVTGGQYDVDVTLEAPNKEIIYRQVKTQF 81

Query: 129 DTHQFVTLVEGTYVVCFSNEFSTYSSAL 156
           D+H FV  + G Y  CFSNEFSTYS  L
Sbjct: 82  DSHSFVPAMSGVYKACFSNEFSTYSHKL 109

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030699|gb|EGI70376.1| Transmembrane emp24 domain-containing protein 7 [Acromyrmex echinatior]

 Score =  135 bits (339), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 60/91 (65%), Positives = 74/91 (81%)

Query: 66  IVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVK 125
           +   VELTFELADNA+ECF+++I++N S  LEFQVVTGG+YDVDV++EAP KEIIY QVK
Sbjct: 19  LTDGVELTFELADNAKECFYQEIEKNVSSTLEFQVVTGGQYDVDVTLEAPNKEIIYSQVK 78

Query: 126 SQFDTHQFVTLVEGTYVVCFSNEFSTYSSAL 156
           +QFD+H F+  + G Y  CFSNEFSTYS  L
Sbjct: 79  TQFDSHSFIPTISGIYKACFSNEFSTYSHKL 109

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118779227|ref|XP_309138.3| AGAP000949-PA [Anopheles gambiae str. PEST] gi|116131830|gb|EAA04928.3| AGAP000949-PA [Anopheles gambiae str. PEST]

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 60/94 (63%), Positives = 77/94 (81%), Gaps = 2/94 (2%)

Query: 62  ILHQI--VQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEI 119
           + HQI   Q VELTFEL DNA+ECF E+I++N +  LEFQVV+GG+YDVDV++E+PT E+
Sbjct: 23  LCHQIPVAQCVELTFELPDNAKECFHEEIQKNQTAALEFQVVSGGRYDVDVTLESPTGEV 82

Query: 120 IYRQVKSQFDTHQFVTLVEGTYVVCFSNEFSTYS 153
           IYRQ+K+QFD++QFV    G YV CFSNEFST+S
Sbjct: 83  IYRQIKTQFDSYQFVAAATGIYVACFSNEFSTFS 116

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322795430|gb|EFZ18187.1| hypothetical protein SINV_05458 [Solenopsis invicta]

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 60/88 (68%), Positives = 73/88 (82%)

Query: 69  AVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQF 128
            VELTFELADNA+ECF+++I++N S  LEFQVVTGG+YDVDV++EAP KEIIY QVK+QF
Sbjct: 40  GVELTFELADNAKECFYQEIEKNVSSTLEFQVVTGGQYDVDVTLEAPNKEIIYSQVKTQF 99

Query: 129 DTHQFVTLVEGTYVVCFSNEFSTYSSAL 156
           D+H F+  + G Y  CFSNEFSTYS  L
Sbjct: 100 DSHSFIPTMSGIYKACFSNEFSTYSHKL 127

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380015045|ref|XP_003691522.1| PREDICTED: CDK5 regulatory subunit-associated protein 3-like [Apis florea]

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 59/104 (56%), Positives = 81/104 (77%), Gaps = 2/104 (1%)

Query: 55  IGFFFLLILHQIVQ--AVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSI 112
           I   F+ +L  I++   VEL+FEL DNA++CF++DI++N + + EFQVVTGG+YDVDV +
Sbjct: 6   ICLLFISLLGTILRTGGVELSFELPDNAKQCFYQDIEKNATALFEFQVVTGGQYDVDVIL 65

Query: 113 EAPTKEIIYRQVKSQFDTHQFVTLVEGTYVVCFSNEFSTYSSAL 156
           EAP KEIIY+Q+K+QFD+HQF+  + G Y  CFSNEFST+S  L
Sbjct: 66  EAPNKEIIYKQIKTQFDSHQFIASMTGAYKACFSNEFSTFSHKL 109

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
WB|WBGene00019003	203	F57B10.5 [Caenorhabditis elega	0.538	0.453	0.543	3.3e-24
FB|FBgn0030341	210	p24-1 "p24-related-1" [Drosoph	0.602	0.490	0.471	7.8e-23
UNIPROTKB|J9PB00	190	TMED7 "Uncharacterized protein	0.578	0.521	0.484	1.3e-22
UNIPROTKB|A4IFT6	225	TMED7 "TMED7 protein" [Bos tau	0.497	0.377	0.529	1.6e-22
UNIPROTKB|E2R3T9	410	TMED7 "Uncharacterized protein	0.578	0.241	0.484	2.1e-22
RGD|727954	226	Tmed7 "transmembrane emp24 pro	0.578	0.438	0.474	2.1e-22
UNIPROTKB|Q9Y3B3	224	TMED7 "Transmembrane emp24 dom	0.497	0.379	0.529	2.6e-22
UNIPROTKB|F1RLE5	225	TMED7 "Uncharacterized protein	0.584	0.444	0.476	2.6e-22
UNIPROTKB|Q6JUT2	404	TIRAP3 "TIR domain-containing	0.497	0.210	0.529	4.1e-22
RGD|1303327	221	Tmed3 "transmembrane emp24 pro	0.549	0.425	0.489	9e-22

WB|WBGene00019003 F57B10.5 [Caenorhabditis elegans (taxid:6239)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 50/92 (54%), Positives = 67/92 (72%)

Query:    62 ILHQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIY 121
             IL  +  ++ELTFEL DNA +CF+ED+K++   + EFQVVTGG YDVD+ IE P  +++Y
Sbjct:    10 ILVALGLSIELTFELPDNANQCFYEDLKKDVDTVFEFQVVTGGHYDVDLIIEDPNGKVLY 69

Query:   122 RQVKSQFDTHQFVTLVEGTYVVCFSNEFSTYS 153
             +  K Q+D+  F   VEGTY  CFSNEFST+S
Sbjct:    70 KDTKKQYDSINFKAEVEGTYKACFSNEFSTFS 101

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0030341 p24-1 "p24-related-1" [Drosophila melanogaster (taxid:7227)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 49/104 (47%), Positives = 70/104 (67%)

Query:    50 LKKQWIGFFFLLILHQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVD 109
             +  Q + F   L++H  + AVE TF+LADNA +CF+E+IK+N+S   EFQV  GG+ DVD
Sbjct:     1 MNTQIVVFAVALMMH-CISAVEFTFDLADNAVDCFYEEIKKNSSAYFEFQVSAGGQLDVD 59

Query:   110 VSIEAPTKEIIYRQVKSQFDTHQFVTLVEGTYVVCFSNEFSTYS 153
             V+++ P  ++IY   K+ FD+HQFV    G Y  CF N+FS +S
Sbjct:    60 VTLKDPQGKVIYSLEKATFDSHQFVAETTGVYTACFGNQFSAFS 103

GO:0030135 "coated vesicle" evidence=ISS

GO:0006892 "post-Golgi vesicle-mediated transport" evidence=ISS

GO:0005215 "transporter activity" evidence=ISS

GO:0030133 "transport vesicle" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022008 "neurogenesis" evidence=IMP

GO:0061357 "positive regulation of Wnt protein secretion" evidence=IMP

GO:0048042 "regulation of post-mating oviposition" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

UNIPROTKB|J9PB00 TMED7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 48/99 (48%), Positives = 66/99 (66%)

Query:    55 IGFFFLLILHQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEA 114
             +    LL+L     A E+TFEL DNA++CF+EDI + T   LEFQV+TGG YDVD  +E 
Sbjct:    22 LALLLLLLLPGPGGASEITFELPDNAKQCFYEDITQGTKCTLEFQVITGGHYDVDCRLED 81

Query:   115 PTKEIIYRQVKSQFDTHQFVTLVEGTYVVCFSNEFSTYS 153
             P   ++Y+++K Q+D+  F     GTY  CFSNEFST++
Sbjct:    82 PDGNVLYKEMKKQYDSFTFTASKNGTYKFCFSNEFSTFT 120

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|A4IFT6 TMED7 "TMED7 protein" [Bos taurus (taxid:9913)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 45/85 (52%), Positives = 62/85 (72%)

Query:    69 AVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQF 128
             A E+TFEL DNA++CF+EDI + T   LEFQV+TGG YDVD  +E P   ++Y+++K Q+
Sbjct:    35 ASEITFELPDNAKQCFYEDITQGTKCTLEFQVITGGHYDVDCRLEDPDGNVLYKEMKKQY 94

Query:   129 DTHQFVTLVEGTYVVCFSNEFSTYS 153
             D++ F     GTY  CFSNEFST++
Sbjct:    95 DSYTFTASKNGTYKFCFSNEFSTFT 119

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|E2R3T9 TMED7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 262 (97.3 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 48/99 (48%), Positives = 66/99 (66%)

Query:    55 IGFFFLLILHQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEA 114
             +    LL+L     A E+TFEL DNA++CF+EDI + T   LEFQV+TGG YDVD  +E 
Sbjct:    22 LALLLLLLLPGPGGASEITFELPDNAKQCFYEDITQGTKCTLEFQVITGGHYDVDCRLED 81

Query:   115 PTKEIIYRQVKSQFDTHQFVTLVEGTYVVCFSNEFSTYS 153
             P   ++Y+++K Q+D+  F     GTY  CFSNEFST++
Sbjct:    82 PDGNVLYKEMKKQYDSFTFTASKNGTYKFCFSNEFSTFT 120

GO:0001817 "regulation of cytokine production" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0006810 "transport" evidence=IEA

RGD|727954 Tmed7 "transmembrane emp24 protein transport domain containing 7" [Rattus norvegicus (taxid:10116)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 47/99 (47%), Positives = 66/99 (66%)

Query:    55 IGFFFLLILHQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEA 114
             +    LL+L       E+TFEL DNA++CF+EDI + T   LEFQV+TGG YDVD  +E 
Sbjct:    22 LALLLLLLLPGPSGGSEITFELPDNAKQCFYEDITQGTKCTLEFQVITGGHYDVDCRLED 81

Query:   115 PTKEIIYRQVKSQFDTHQFVTLVEGTYVVCFSNEFSTYS 153
             P  +++Y+++K Q+D+  F     GTY  CFSNEFST++
Sbjct:    82 PDGKVLYKEMKKQYDSFTFTASKNGTYKFCFSNEFSTFT 120

GO:0005783 "endoplasmic reticulum" evidence=ISO;ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=ISO;ISS

GO:0005794 "Golgi apparatus" evidence=ISO;ISS

GO:0012507 "ER to Golgi transport vesicle membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030663 "COPI-coated vesicle membrane" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

UNIPROTKB|Q9Y3B3 TMED7 "Transmembrane emp24 domain-containing protein 7" [Homo sapiens (taxid:9606)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 45/85 (52%), Positives = 62/85 (72%)

Query:    69 AVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQF 128
             A E+TFEL DNA++CF+EDI + T   LEFQV+TGG YDVD  +E P  +++Y+++K Q+
Sbjct:    34 ASEITFELPDNAKQCFYEDIAQGTKCTLEFQVITGGHYDVDCRLEDPDGKVLYKEMKKQY 93

Query:   129 DTHQFVTLVEGTYVVCFSNEFSTYS 153
             D+  F     GTY  CFSNEFST++
Sbjct:    94 DSFTFTASKNGTYKFCFSNEFSTFT 118

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0030127 "COPII vesicle coat" evidence=TAS

GO:0030126 "COPI vesicle coat" evidence=TAS

UNIPROTKB|F1RLE5 TMED7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 50/105 (47%), Positives = 70/105 (66%)

Query:    53 QWIGFFFLLILHQIVQ----AVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDV 108
             +W G   L++L  +V     A E+TFEL DNA++CF+EDI + T   LEFQV+TGG YDV
Sbjct:    16 RW-GHRLLVLLLLLVPGPGGASEITFELPDNAKQCFYEDITQGTKCTLEFQVITGGHYDV 74

Query:   109 DVSIEAPTKEIIYRQVKSQFDTHQFVTLVEGTYVVCFSNEFSTYS 153
             D  +E P   ++Y+++K Q+D+  F     GTY  CFSNEFST++
Sbjct:    75 DCRLEDPDGNVLYKEMKKQYDSFTFTASKNGTYKFCFSNEFSTFT 119

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|Q6JUT2 TIRAP3 "TIR domain-containing adapter molecule 2" [Homo sapiens (taxid:9606)]

 Score = 259 (96.2 bits), Expect = 4.1e-22, P = 4.1e-22
 Identities = 45/85 (52%), Positives = 62/85 (72%)

Query:    69 AVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQF 128
             A E+TFEL DNA++CF+EDI + T   LEFQV+TGG YDVD  +E P  +++Y+++K Q+
Sbjct:    34 ASEITFELPDNAKQCFYEDIAQGTKCTLEFQVITGGHYDVDCRLEDPDGKVLYKEMKKQY 93

Query:   129 DTHQFVTLVEGTYVVCFSNEFSTYS 153
             D+  F     GTY  CFSNEFST++
Sbjct:    94 DSFTFTASKNGTYKFCFSNEFSTFT 118

GO:0006810 "transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1303327 Tmed3 "transmembrane emp24 protein transport domain containing 3" [Rattus norvegicus (taxid:10116)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 46/94 (48%), Positives = 66/94 (70%)

Query:    60 LLILHQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEI 119
             LL+  + ++  ELTFEL DNA++CF E++++     L++QV+TGG YDVD  +E P   I
Sbjct:    21 LLLRAERLRGAELTFELPDNAKQCFHEEVEQGVKFSLDYQVITGGHYDVDCYVEDPMGNI 80

Query:   120 IYRQVKSQFDTHQFVTLVEGTYVVCFSNEFSTYS 153
             IYR+ K Q+D+  + T V+G Y  CFSNEFST+S
Sbjct:    81 IYRETKKQYDSFTYKTEVKGVYRFCFSNEFSTFS 114

GO:0005783 "endoplasmic reticulum" evidence=ISO;ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=ISO;ISS

GO:0005794 "Golgi apparatus" evidence=ISO;IDA

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IDA

GO:0032580 "Golgi cisterna membrane" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
D3ZTX0	TMED7_RAT	No assigned EC number	0.5301	0.4853	0.3672	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	171
pfam01105	178	pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOL	9e-20

>gnl|CDD|216301 pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOLD

 Score = 81.2 bits (201), Expect = 9e-20
 Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 3/87 (3%)

Query: 71  ELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPT---KEIIYRQVKSQ 127
            LTFEL    +ECF+E++ + T V   +QV++GG  D+D +I  P      I  ++ +  
Sbjct: 1   ALTFELPAGEKECFYEEVPKGTLVTGSYQVISGGNLDIDFTITDPDGNGNVIYSKEDRKS 60

Query: 128 FDTHQFVTLVEGTYVVCFSNEFSTYSS 154
                F     G Y  CFSN FST+SS
Sbjct: 61  GGKFSFTATESGEYKFCFSNSFSTFSS 87

Members of this family are implicated in bringing cargo forward from the ER and binding to coat proteins by their cytoplasmic domains. This domain corresponds closely to the beta-strand rich GOLD domain described in. The GOLD domain is always found combined with lipid- or membrane-association domains. Length = 178

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	171
KOG1692|consensus	201		99.92
KOG1693|consensus	209		99.91
KOG3829|consensus	486		99.91
KOG3287|consensus	236		99.82
PF01105	183	EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro	99.72
KOG1691|consensus	210		99.71
KOG1690|consensus	215		99.6
PF15051	326	FAM198: FAM198 protein	95.75
PF13897	136	GOLD_2: Golgi-dynamics membrane-trafficking	94.56
PF04151	70	PPC: Bacterial pre-peptidase C-terminal domain; In	94.32
PF01835	99	A2M_N: MG2 domain; InterPro: IPR002890 The protein	93.0
smart00557	93	IG_FLMN Filamin-type immunoglobulin domains. These	92.91
PF06702	221	DUF1193: Protein of unknown function (DUF1193); In	91.2
PF13860	81	FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.	89.03
PF11589	106	DUF3244: Domain of unknown function (DUF3244); Int	88.48
PF00630	101	Filamin: Filamin/ABP280 repeat; InterPro: IPR01786	85.27
PF05738	70	Cna_B: Cna protein B-type domain; InterPro: IPR008	83.2
PF09315	179	DUF1973: Domain of unknown function (DUF1973); Int	82.36
PRK14081	667	triple tyrosine motif-containing protein; Provisio	82.13

>KOG1692|consensus

Probab=99.92  E-value=3.3e-25  Score=175.49  Aligned_cols=101  Identities=30%  Similarity=0.541  Sum_probs=96.4

Q ss_pred             ceEEEEEEcCCCcceEEEeccCCcEEEEEEEEEeCCeeeEEEEEEcCCCcEEEEeeecceeeEEEEeccceeEEEEeecC
Q psy189           69 AVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQFDTHQFVTLVEGTYVVCFSNE  148 (171)
Q Consensus        69 ~~~ltf~l~~~~~~CFye~~~~~~~v~~~y~V~~gg~~dI~v~V~dP~g~~v~~~~~~s~G~f~Fta~~~G~Y~~CF~N~  148 (171)
                      +..+.+.+++.+++||||++..|++++++|+|..||..+||+.|++|+|++|++.++.++|+|+|+|+.+|.|++||+|.
T Consensus        18 ~~~~~is~~ah~eeCf~e~~~~gd~~~vsF~v~~gg~~~vd~~I~gP~~~~i~~~~~~ssgk~tF~a~~~G~Y~fCF~N~   97 (201)
T KOG1692|consen   18 AAGYGISLDAHEEECFFENLEEGDKLSVSFEVIDGGFLGVDVEITGPDGKIIHKGKRESSGKYTFTAPKKGTYTFCFSNK   97 (201)
T ss_pred             hhheeEEEccchhhhHhhhhccCCEEEEEEEEecCCccceeEEEECCCCchhhhcccccCceEEEEecCCceEEEEecCC
Confidence            66778888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcceEEEEEEEEEEEeec
Q psy189          149 FSTYSSALEVISTHAAVAVES  169 (171)
Q Consensus       149 ~s~~~~K~V~F~i~~~i~~~~  169 (171)
                      .|+.++|+|.|+||+|.+.+.
T Consensus        98 ~s~mtpk~V~F~ihvg~~~~~  118 (201)
T KOG1692|consen   98 MSTMTPKTVMFTIHVGHAPQR  118 (201)
T ss_pred             CCCCCceEEEEEEEEeecccc
Confidence            999999999999999998753

>KOG1693|consensus

Probab=99.91  E-value=3.7e-24  Score=170.40  Aligned_cols=97  Identities=46%  Similarity=0.839  Sum_probs=92.5

Q ss_pred             ceEEEEEEcCCCcceEEEeccCCc-EEEEEEEEEeCCeeeEEEEEEcCCCcEEEEeeecceeeEEEEeccceeEEEEeec
Q psy189           69 AVELTFELADNARECFFEDIKRNT-SVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQFDTHQFVTLVEGTYVVCFSN  147 (171)
Q Consensus        69 ~~~ltf~l~~~~~~CFye~~~~~~-~v~~~y~V~~gg~~dI~v~V~dP~g~~v~~~~~~s~G~f~Fta~~~G~Y~~CF~N  147 (171)
                      +..+||+||++.++|||+++++++ ..++.|+|+.||+.|||+.|.+|+|++|++..+++.++|.|++...|+|+|||+|
T Consensus        21 a~elTfeLp~~aKqC~Y~d~~~~~~~~~~~fqV~tGG~fDVD~~I~aPdgkvI~~~~kk~~~~~~f~ae~~G~Y~fCFsN  100 (209)
T KOG1693|consen   21 ASELTFELPDNAKQCFYEDLKKDDDTTSFEFQVQTGGHFDVDYDIEAPDGKVIYSEKKKRYDSFLFKAEGKGEYTFCFSN  100 (209)
T ss_pred             cccEEEEcCCcchhheeeecccCCceEEEEEEEEeCCceeeEEEEECCCCCEEeeccccccccEEEEEecceEEEEEecC
Confidence            678999999999999999999865 4999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcceEEEEEEEEEE
Q psy189          148 EFSTYSSALEVISTHAAV  165 (171)
Q Consensus       148 ~~s~~~~K~V~F~i~~~i  165 (171)
                      ++|++++|+|.++++.+-
T Consensus       101 ~fstf~~Kiv~~~~q~~~  118 (209)
T KOG1693|consen  101 EFSTFSHKIVYMDFQVGE  118 (209)
T ss_pred             ccccccceEeeehhhhcc
Confidence            999999999999998763

>KOG3829|consensus

Probab=99.91  E-value=1e-25  Score=195.09  Aligned_cols=113  Identities=21%  Similarity=0.275  Sum_probs=92.7

Q ss_pred             ceEEecCceeeeec-----cCcccCCceeeEeeeccccceeEEeechhhhHhhhhhhHHHHHHHhhhhc----c-cceEE
Q psy189            3 WIGSLEGSAFAMFP-----RDQQTLPNHFYFTDYERHNSEIATFHLDRISMLLKKQWIGFFFLLILHQI----V-QAVEL   72 (171)
Q Consensus         3 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~h~~ei~~~~l~~~~~~~~~~~~~~~~~~~l~~~----~-~~~~l   72 (171)
                      .++.|++.||||||     ||++++|+  ||+||||||||||||||||||+|||.||++ +|++++...    + ....-
T Consensus       179 lll~~~~~~KavfKPmR~~Rd~~~~~~--yfs~~dRHnAEiAAFHLDRiL~FrRappvV-GRvvNlttEI~~~a~~~Llq  255 (486)
T KOG3829|consen  179 LLLRLSHQQKVVFKPMRYPRDEVIDGM--YYSGFDRHNAEVAAFHLDRVLDFRRAPPVV-GRVVNLTTEIYEKAEEELLQ  255 (486)
T ss_pred             EEEEecCCceeeeccccCCccccCCCc--ccccccccchhhhhhhhhhhhcccccCccc-ceeeeeehHHHHhhHHHHHh
Confidence            47899999999999     99999999  789999999999999999999999999884 988887542    2 22333


Q ss_pred             EEEEcCCCcceEEEeccCCcEEEEEEEEEeCC-eeeEEEEEEcCCCcEE
Q psy189           73 TFELADNARECFFEDIKRNTSVILEFQVVTGG-KYDVDVSIEAPTKEII  120 (171)
Q Consensus        73 tf~l~~~~~~CFye~~~~~~~v~~~y~V~~gg-~~dI~v~V~dP~g~~v  120 (171)
                      ||+++|+++.|||++|++  ++.-++.|++-+ ..+-++.+.-|+-+.+
T Consensus       256 tfFvsp~~N~CF~gKC~Y--yC~t~~avCg~pdmlEGS~~~fLP~~~~~  302 (486)
T KOG3829|consen  256 TFFVSPAENYCFFGKCDY--YCDTEEAVCGDPDMLEGSLIAFLPDESTL  302 (486)
T ss_pred             heeeccCcceEEeecccc--ccCCcccccCCcccccceEEEEcCCcccc
Confidence            899999999999999987  455568888533 3466788888875544

>KOG3287|consensus

Probab=99.82  E-value=8e-20  Score=147.33  Aligned_cols=94  Identities=27%  Similarity=0.570  Sum_probs=90.3

Q ss_pred             cceEEEEEEcCCCcceEEEeccCCcEEEEEEEEEeC-CeeeEEEEEEcCCCcEEEEeeecceeeEEEEeccceeEEEEee
Q psy189           68 QAVELTFELADNARECFFEDIKRNTSVILEFQVVTG-GKYDVDVSIEAPTKEIIYRQVKSQFDTHQFVTLVEGTYVVCFS  146 (171)
Q Consensus        68 ~~~~ltf~l~~~~~~CFye~~~~~~~v~~~y~V~~g-g~~dI~v~V~dP~g~~v~~~~~~s~G~f~Fta~~~G~Y~~CF~  146 (171)
                      ....+|++||+|+++|||..++.+.++.++|+|+.| |+.+|++++.+|.|.+|.+..++..|.+++...+.|.|++||+
T Consensus        32 ~d~dftv~ipAGk~eCf~Q~v~~~~tle~eyQVi~G~GDl~i~Ftl~~P~G~~lv~~q~k~dg~ht~e~~e~GdY~~CfD  111 (236)
T KOG3287|consen   32 DDYDFTVMIPAGKTECFYQPVPQGATLEVEYQVIDGAGDLDIDFTLLNPAGEVLVSDQRKVDGVHTVEVTETGDYQVCFD  111 (236)
T ss_pred             cccceEEEecCCCceeeeeeccCCeEEEEEEEEEecCCccceeeEEeCCCccEEeecccccCceeEeeccCCcceEEEEc
Confidence            356799999999999999999999999999999999 7889999999999999999999999999999999999999999


Q ss_pred             cCCCCCcceEEEEEE
Q psy189          147 NEFSTYSSALEVIST  161 (171)
Q Consensus       147 N~~s~~~~K~V~F~i  161 (171)
                      |++|+++.|+|.|++
T Consensus       112 NsFS~fs~K~Vffel  126 (236)
T KOG3287|consen  112 NSFSTFSRKLVFFEL  126 (236)
T ss_pred             CccccccceEEEEEE
Confidence            999999999999997

>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins

Probab=99.72  E-value=5.7e-19  Score=136.58  Aligned_cols=96  Identities=31%  Similarity=0.623  Sum_probs=0.0

Q ss_pred             EEEEEEcCCCcceEEEeccCCcEEEEEEEEEeCC-eeeEEEEEE--cCCCcEEEEeeec-ceeeEEEEeccceeEEEEee
Q psy189           71 ELTFELADNARECFFEDIKRNTSVILEFQVVTGG-KYDVDVSIE--APTKEIIYRQVKS-QFDTHQFVTLVEGTYVVCFS  146 (171)
Q Consensus        71 ~ltf~l~~~~~~CFye~~~~~~~v~~~y~V~~gg-~~dI~v~V~--dP~g~~v~~~~~~-s~G~f~Fta~~~G~Y~~CF~  146 (171)
                      |++|.|+||+++||++++++|+.+.++|.|.+++ ..+|++.|+  +|+|+.++++... ++|+|+|+++++|+|++||+
T Consensus         1 a~~f~l~~g~~~Cf~e~v~~~~~i~~~y~v~~~~~~~~v~~~i~~~~~~~~~i~~~~~~~~~~~f~f~~~~~G~y~iCf~   80 (183)
T PF01105_consen    1 ALTFELEPGETECFYEEVPKGTTIRGSYRVTDGGGAYDVDFTIRDPDPNGEVIYSKSDKESEGSFSFTAKESGEYQICFD   80 (183)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEEEECCCCcEEEEEEcCCCcEEEEEEEEeeccccceEEEEEEecccCCceeeeecccccCCcEEEEeccCCCEEEEEE
Confidence            5899999999999999999999999999999888 789999999  6666999987555 45799999999999999999


Q ss_pred             cCCCCCcc-eEEEEEEEEEEE
Q psy189          147 NEFSTYSS-ALEVISTHAAVA  166 (171)
Q Consensus       147 N~~s~~~~-K~V~F~i~~~i~  166 (171)
                      |..+..++ +.|.|+++++..
T Consensus        81 n~~~~~~~~~~v~~~~~~~~~  101 (183)
T PF01105_consen   81 NSSSSFSPSKRVSFDIDVGNE  101 (183)
T ss_dssp             ---------------------
T ss_pred             cCCCCccccEEEEEEEEEeec
Confidence            99998777 999999998853

It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.

>KOG1691|consensus

Probab=99.71  E-value=1.5e-16  Score=128.11  Aligned_cols=107  Identities=15%  Similarity=0.304  Sum_probs=92.3

Q ss_pred             hhhcccceEEEEEEcCCCcceEEEeccCCcEEEEEEEEEeCCe---eeEEEEEEcCCCcEEEEeeecceeeEEEEeccce
Q psy189           63 LHQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVVTGGK---YDVDVSIEAPTKEIIYRQVKSQFDTHQFVTLVEG  139 (171)
Q Consensus        63 l~~~~~~~~ltf~l~~~~~~CFye~~~~~~~v~~~y~V~~gg~---~dI~v~V~dP~g~~v~~~~~~s~G~f~Fta~~~G  139 (171)
                      ++......++.|.++++.++|+.|++.+|..+.++|.+.+...   +.+++.|+||.|+.+++.++..+|+|+|++.+.|
T Consensus        14 ~~~~~~~~a~~f~v~~~~~kCi~EeI~~n~lv~g~y~i~~~~~~~~~~~~~~Vts~~G~~~~~~env~~gqFaFta~e~~   93 (210)
T KOG1691|consen   14 LLLLPLVHALRFDVPSKTTKCISEEIHENVLVVGDYEIINPNGDHSHKLSVKVTSPYGNNLHSKENVTKGQFAFTAEESG   93 (210)
T ss_pred             HHHhhhhheEEEEecCCCCEeehhhhccCeEEEEEEEEecCCCCccceEEEEEEcCCCceeehhhccccceEEEEeccCC
Confidence            3444667899999999999999999999999999999985322   4699999999999999999999999999999999


Q ss_pred             eEEEEeecCCCCC---cceEEEEEEEEEEEeec
Q psy189          140 TYVVCFSNEFSTY---SSALEVISTHAAVAVES  169 (171)
Q Consensus       140 ~Y~~CF~N~~s~~---~~K~V~F~i~~~i~~~~  169 (171)
                      .|.+||.|.-...   ....|.|||++|+...+
T Consensus        94 ~y~~Cf~~~~~~~~p~~~~~I~ld~k~Gv~akd  126 (210)
T KOG1691|consen   94 MYEACFTADVPGHKPETKRSIDLDWKTGVEAKD  126 (210)
T ss_pred             cEEEEEecccCCCCCCcceEEEEEeeccccccc
Confidence            9999999944332   24789999999997643

>KOG1690|consensus

Probab=99.60  E-value=1.2e-14  Score=116.12  Aligned_cols=102  Identities=17%  Similarity=0.317  Sum_probs=81.1

Q ss_pred             hhhcccceEEEEEEcCCCcceEEEeccCCcEEEEEEEEE----------eCCeeeEEEEEEcCCCc--EEEEeeecceee
Q psy189           63 LHQIVQAVELTFELADNARECFFEDIKRNTSVILEFQVV----------TGGKYDVDVSIEAPTKE--IIYRQVKSQFDT  130 (171)
Q Consensus        63 l~~~~~~~~ltf~l~~~~~~CFye~~~~~~~v~~~y~V~----------~gg~~dI~v~V~dP~g~--~v~~~~~~s~G~  130 (171)
                      +..+..+.++.|.+..++++||++++++|++++++|.++          +..+..+.+.|.+|..+  .|++++..++|+
T Consensus        12 ~~l~~~~~a~yFy~~~~e~KCF~eelpk~tmv~G~yk~qlyd~~~~~y~~~p~~gm~VeV~e~fdnnh~Vl~q~~ss~G~   91 (215)
T KOG1690|consen   12 LLLATQVQALYFYIAGTEKKCFIEELPKGTMVTGNYKAQLYDDQLKGYGSYPNIGMHVEVKETFDNNHVVLSQQYSSEGD   91 (215)
T ss_pred             HHHHhhccEEEEEecCCcccchhhhCCCCcEEEeeeeeeeecchhcccccCCCceEEEEeecCCCCceEEEeecCCCCCc
Confidence            344567889999999999999999999999999999987          11234577888888655  999999999999


Q ss_pred             EEEEeccceeEEEEeecCCCC-Ccc--eEEEEEEEEE
Q psy189          131 HQFVTLVEGTYVVCFSNEFST-YSS--ALEVISTHAA  164 (171)
Q Consensus       131 f~Fta~~~G~Y~~CF~N~~s~-~~~--K~V~F~i~~~  164 (171)
                      |+|++..+|+|+||+....+. ++.  -.|.+++.+|
T Consensus        92 ftFta~~~GeH~IC~~s~s~awf~~aklRvhld~qvG  128 (215)
T KOG1690|consen   92 FTFTALTPGEHRICIQSNSTAWFNGAKLRVHLDIQVG  128 (215)
T ss_pred             eEEEccCCCceEEEEecccchhhccceEEEEEEEeeC
Confidence            999999999999999766552 222  2355555444

>PF15051 FAM198: FAM198 protein

Probab=95.75  E-value=0.0014  Score=56.16  Aligned_cols=39  Identities=21%  Similarity=0.059  Sum_probs=29.6

Q ss_pred             ceeeEeeeccccceeEEeechhhhHhhhhhhHHHHHHHhh
Q psy189           24 NHFYFTDYERHNSEIATFHLDRISMLLKKQWIGFFFLLIL   63 (171)
Q Consensus        24 ~~~~~~~~~~h~~ei~~~~l~~~~~~~~~~~~~~~~~~~l   63 (171)
                      ..-....-...++||.||||||||++.|.-|.+ .|.+..
T Consensus        65 ~~CGLiKrp~D~~EVfAFHLDRVLGLNRTLPaV-sRkf~~  103 (326)
T PF15051_consen   65 GLCGLIKRPLDMSEVFAFHLDRVLGLNRTLPAV-SRKFEF  103 (326)
T ss_pred             CceeeECCCCcHHHHHHHHHHHHhcccccchHh-Hhhhcc
Confidence            334556778899999999999999999866663 555544

>PF13897 GOLD_2: Golgi-dynamics membrane-trafficking

Probab=94.56  E-value=0.051  Score=41.51  Aligned_cols=30  Identities=23%  Similarity=0.284  Sum_probs=27.3

Q ss_pred             EEEeccceeEEEEeecCCCCCcceEEEEEE
Q psy189          132 QFVTLVEGTYVVCFSNEFSTYSSALEVIST  161 (171)
Q Consensus       132 ~Fta~~~G~Y~~CF~N~~s~~~~K~V~F~i  161 (171)
                      +++.+.+|.|-++|+|.+|.+.+|+|.+.|
T Consensus       104 s~~c~~~GvYvLkFDNSYS~~rsK~l~Y~V  133 (136)
T PF13897_consen  104 SHTCPGPGVYVLKFDNSYSWFRSKKLYYRV  133 (136)
T ss_pred             EEECCCCeEEEEEeeCcceeEEeeEEEEEE
Confidence            567889999999999999999999999886

>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.32  E-value=0.21  Score=33.02  Aligned_cols=60  Identities=12%  Similarity=0.210  Sum_probs=40.9

Q ss_pred             ceEEEeccCCcEEEEEEEEEeCCeeeEEEEEEcCCCcEEEEeee-----cceeeEEEEeccceeEEEE
Q psy189           82 ECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVK-----SQFDTHQFVTLVEGTYVVC  144 (171)
Q Consensus        82 ~CFye~~~~~~~v~~~y~V~~gg~~dI~v~V~dP~g~~v~~~~~-----~s~G~f~Fta~~~G~Y~~C  144 (171)
                      ..|.-++++|..+.++  +.+ ...+.++.+.+++|..+.....     .......|+++.+|+|.+=
T Consensus         3 D~y~f~v~ag~~l~i~--l~~-~~~d~dl~l~~~~g~~~~~~d~~~~~~~~~~~i~~~~~~~GtYyi~   67 (70)
T PF04151_consen    3 DYYSFTVPAGGTLTID--LSG-GSGDADLYLYDSNGNSLASYDDSSQSGGNDESITFTAPAAGTYYIR   67 (70)
T ss_dssp             EEEEEEESTTEEEEEE--ECE-TTSSEEEEEEETTSSSCEECCCCTCETTSEEEEEEEESSSEEEEEE
T ss_pred             EEEEEEEcCCCEEEEE--EcC-CCCCeEEEEEcCCCCchhhheecCCCCCCccEEEEEcCCCEEEEEE
Confidence            3566677777775544  333 3337789999999887776322     2345678899999999763

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....

>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white

Probab=93.00  E-value=2.2  Score=29.74  Aligned_cols=62  Identities=16%  Similarity=0.127  Sum_probs=40.5

Q ss_pred             CCcEEEEEEEEEeCC-------eeeEEEEEEcCCCcEEEEeee---cceeeEEEE--ec---cceeEEEEeecCCCC
Q psy189           90 RNTSVILEFQVVTGG-------KYDVDVSIEAPTKEIIYRQVK---SQFDTHQFV--TL---VEGTYVVCFSNEFST  151 (171)
Q Consensus        90 ~~~~v~~~y~V~~gg-------~~dI~v~V~dP~g~~v~~~~~---~s~G~f~Ft--a~---~~G~Y~~CF~N~~s~  151 (171)
                      .|+.|.+.--+....       ...+.+.|.||+|+.+.+...   ...|.+.++  .+   ..|.|++=.....+.
T Consensus        13 PGetV~~~~~~~~~~~~~~~~~~~~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~~~~~   89 (99)
T PF01835_consen   13 PGETVHFRAIVRDLDNDFKPPANSPVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKTDDDG   89 (99)
T ss_dssp             TTSEEEEEEEEEEECTTCSCESSEEEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEETTTT
T ss_pred             CCCEEEEEEEEeccccccccccCCceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEEccCC
Confidence            477777766554322       247999999999999988755   345655544  33   369999998875443

A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....

>smart00557 IG_FLMN Filamin-type immunoglobulin domains

Probab=92.91  E-value=0.76  Score=32.13  Aligned_cols=44  Identities=16%  Similarity=0.254  Sum_probs=32.2

Q ss_pred             CeeeEEEEEEcCCCcEEEEe-eecceeeE--EEEeccceeEEEEeec
Q psy189          104 GKYDVDVSIEAPTKEIIYRQ-VKSQFDTH--QFVTLVEGTYVVCFSN  147 (171)
Q Consensus       104 g~~dI~v~V~dP~g~~v~~~-~~~s~G~f--~Fta~~~G~Y~~CF~N  147 (171)
                      |..++.+.|.+|+|+.+--+ .+...|.|  +|+.+..|.|.+...-
T Consensus        30 G~~~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~P~~~G~~~i~V~~   76 (93)
T smart00557       30 GGGELEVEVTGPSGKKVPVEVKDNGDGTYTVSYTPTEPGDYTVTVKF   76 (93)
T ss_pred             CCCcEEEEEECCCCCeeEeEEEeCCCCEEEEEEEeCCCEeEEEEEEE
Confidence            44579999999999655443 34445544  7889999999988853

These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).

>PF06702 DUF1193: Protein of unknown function (DUF1193); InterPro: IPR009581 This family is baesd on the C terminus of several hypothetical eukaryotic proteins of unknown function

Probab=91.20  E-value=0.14  Score=42.29  Aligned_cols=41  Identities=15%  Similarity=0.248  Sum_probs=32.4

Q ss_pred             EEEcCCCcceEEEeccCCcEEEEEEEEEeC-CeeeEEEEEEcCC
Q psy189           74 FELADNARECFFEDIKRNTSVILEFQVVTG-GKYDVDVSIEAPT  116 (171)
Q Consensus        74 f~l~~~~~~CFye~~~~~~~v~~~y~V~~g-g~~dI~v~V~dP~  116 (171)
                      |+++|+++.|||++|.+  ...-++.|.+. +..+.++.++-|+
T Consensus         1 ff~s~~~n~Cf~g~C~y--yC~~~~avCg~~d~lEgs~~~~LP~   42 (221)
T PF06702_consen    1 FFISPANNTCFYGKCSY--YCKTEHAVCGNPDMLEGSLAAFLPD   42 (221)
T ss_pred             CccCCCCCEEEeecCcc--ccCCcccccCCCCceeeeeeeecCC
Confidence            67899999999999976  56667888853 4457788888887

Proteins in this entry contain two conserved motifs: DRHHYE and QCC, as well as a number of conserved cysteine residues.

>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A

Probab=89.03  E-value=4.4  Score=27.59  Aligned_cols=44  Identities=16%  Similarity=0.184  Sum_probs=28.7

Q ss_pred             cEEEEEEEEEeCCeeeEEEEEEcCCCcEEEEee--ecceeeEEEEec
Q psy189           92 TSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQV--KSQFDTHQFVTL  136 (171)
Q Consensus        92 ~~v~~~y~V~~gg~~dI~v~V~dP~g~~v~~~~--~~s~G~f~Fta~  136 (171)
                      ....+.|.+... ...+.+.|+|.+|++|.+..  ..+.|.+.|+-.
T Consensus        12 ~~~~~~~~l~~~-a~~v~v~I~d~~G~~V~t~~~~~~~~G~~~~~Wd   57 (81)
T PF13860_consen   12 TKGSIEYTLPED-ADNVTVTIYDSNGQVVRTISLGSQSAGEHSFTWD   57 (81)
T ss_dssp             CEEEEEEEECSS-CEEEEEEEEETTS-EEEEEEEEECSSEEEEEEE-
T ss_pred             EEEEEEEeCCCc-ccEEEEEEEcCCCCEEEEEEcCCcCCceEEEEEC
Confidence            467777766643 44689999999999998753  344565555543

>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes

Probab=88.48  E-value=3.9  Score=29.35  Aligned_cols=57  Identities=19%  Similarity=0.292  Sum_probs=38.2

Q ss_pred             CcEEEEEEEEEeCCeeeEEEEEEcCCCcEEEEeeecc--eeeEEEEec--cceeEEEEeecCCC
Q psy189           91 NTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQ--FDTHQFVTL--VEGTYVVCFSNEFS  150 (171)
Q Consensus        91 ~~~v~~~y~V~~gg~~dI~v~V~dP~g~~v~~~~~~s--~G~f~Fta~--~~G~Y~~CF~N~~s  150 (171)
                      |..+.+.|.   ....++.++|+|.+|++||++.-..  ....++...  ..|+|.+=+.+...
T Consensus        36 ~~~l~I~F~---~~~~~vtI~I~d~~G~vVy~~~~~~~~~~~~~I~L~~~~~G~Y~l~i~~~~g   96 (106)
T PF11589_consen   36 GNNLSIEFE---SPIGDVTITIKDSTGNVVYSETVSNSAGQSITIDLNGLPSGEYTLEITNGNG   96 (106)
T ss_dssp             TTEEEEEES---S--SEEEEEEEETT--EEEEEEESCGGTTEEEEE-TTS-SEEEEEEEEECTC
T ss_pred             CCEEEEEEc---CCCCCEEEEEEeCCCCEEEEEEccCCCCcEEEEEeCCCCCccEEEEEEeCCC
Confidence            456777773   2334689999999999999985433  334677765  69999999998776

The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.

>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod

Probab=85.27  E-value=5.9  Score=27.33  Aligned_cols=40  Identities=15%  Similarity=0.292  Sum_probs=28.7

Q ss_pred             eEEEEEEcCCCc----EEE-EeeecceeeE--EEEeccceeEEEEee
Q psy189          107 DVDVSIEAPTKE----IIY-RQVKSQFDTH--QFVTLVEGTYVVCFS  146 (171)
Q Consensus       107 dI~v~V~dP~g~----~v~-~~~~~s~G~f--~Fta~~~G~Y~~CF~  146 (171)
                      ++.+.|.+|++.    .+. .-.....|.|  +|+.+..|.|++...
T Consensus        43 ~~~v~i~~p~~~~~~~~~~~~v~~~~~G~y~v~y~p~~~G~y~i~V~   89 (101)
T PF00630_consen   43 EFQVTITSPDGKEEPVPVPVEVIDNGDGTYTVSYTPTEPGKYKISVK   89 (101)
T ss_dssp             EEEEEEESSSSESS--EEEEEEEEESSSEEEEEEEESSSEEEEEEEE
T ss_pred             eeEEEEeCCCCCccccccceEEEECCCCEEEEEEEeCccEeEEEEEE
Confidence            578899999987    332 2234455555  788999999998874

Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....

>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains

Probab=83.20  E-value=4.2  Score=26.34  Aligned_cols=44  Identities=11%  Similarity=0.098  Sum_probs=35.9

Q ss_pred             EEEEEEcCCCcEEEE--eeecceeeEEEEeccceeEEEEeecCCCC
Q psy189          108 VDVSIEAPTKEIIYR--QVKSQFDTHQFVTLVEGTYVVCFSNEFST  151 (171)
Q Consensus       108 I~v~V~dP~g~~v~~--~~~~s~G~f~Fta~~~G~Y~~CF~N~~s~  151 (171)
                      +.|.+++.++..+..  ....+.|.+.|.-...|.|.+=....-..
T Consensus         4 a~f~L~~~~~~~~~~~~~~Td~~G~~~f~~L~~G~Y~l~E~~aP~G   49 (70)
T PF05738_consen    4 ATFELYDEDGNEVIEVTVTTDENGKYTFKNLPPGTYTLKETKAPDG   49 (70)
T ss_dssp             EEEEEEETTSEEEEEEEEEGGTTSEEEEEEEESEEEEEEEEETTTT
T ss_pred             eEEEEEECCCCEEEEEEEEECCCCEEEEeecCCeEEEEEEEECCCC
Confidence            678889999888876  56678999999999999999988774433

The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....

>PF09315 DUF1973: Domain of unknown function (DUF1973); InterPro: IPR015394 These functionally uncharacterised domains are found in various eukaryotic calcium-dependent chloride channels

Probab=82.36  E-value=23  Score=28.12  Aligned_cols=75  Identities=16%  Similarity=0.207  Sum_probs=45.8

Q ss_pred             cceEEEecc--CCcEEEEEEEEEeCCeeeEEEEEEcCCCcEEEE-eeecceeeEEEEe---ccceeEEEEeecCCCCCcc
Q psy189           81 RECFFEDIK--RNTSVILEFQVVTGGKYDVDVSIEAPTKEIIYR-QVKSQFDTHQFVT---LVEGTYVVCFSNEFSTYSS  154 (171)
Q Consensus        81 ~~CFye~~~--~~~~v~~~y~V~~gg~~dI~v~V~dP~g~~v~~-~~~~s~G~f~Fta---~~~G~Y~~CF~N~~s~~~~  154 (171)
                      +.+|+-+-.  .++.+.+.+.-.    ....+.+++|+|+.+.. ..+.......+..   .+.|.+++.+.|..+.  +
T Consensus        18 ~gtv~ID~tvG~~T~f~v~w~~~----~~p~i~L~~P~G~~~~~~~~d~~~~~~~i~ipg~ae~G~W~y~i~~~~~~--~   91 (179)
T PF09315_consen   18 TGTVYIDSTVGNNTVFTVTWQNS----SPPSITLTDPSGTVYTTFTTDSNSKTARIQIPGTAEVGTWTYSITNTSSS--S   91 (179)
T ss_pred             EeEEEECCCCCCCeEEEEEECCC----CCceEEEECCCCCEEeeeEEcccccEEEEECCCCcccccEEEEEecCCCC--c
Confidence            355555443  344444444322    34678899999999866 2333444444444   4699999999887766  4


Q ss_pred             eEEEEEE
Q psy189          155 ALEVIST  161 (171)
Q Consensus       155 K~V~F~i  161 (171)
                      +.+.+.+
T Consensus        92 q~v~vtV   98 (179)
T PF09315_consen   92 QTVTVTV   98 (179)
T ss_pred             ceEEEEE
Confidence            5555554

>PRK14081 triple tyrosine motif-containing protein; Provisional

Probab=82.13  E-value=16  Score=34.82  Aligned_cols=72  Identities=11%  Similarity=0.147  Sum_probs=48.1

Q ss_pred             CcEEEEEEEEEeCCeeeEEEEEEcCCCcEEEEeeecceeeEEEEeccceeEEE--EeecCCCC---CcceEEEEEEEE
Q psy189           91 NTSVILEFQVVTGGKYDVDVSIEAPTKEIIYRQVKSQFDTHQFVTLVEGTYVV--CFSNEFST---YSSALEVISTHA  163 (171)
Q Consensus        91 ~~~v~~~y~V~~gg~~dI~v~V~dP~g~~v~~~~~~s~G~f~Fta~~~G~Y~~--CF~N~~s~---~~~K~V~F~i~~  163 (171)
                      |+.+.++-...+|.+.-..+.|+. +|+.+...+-..+..+.|+...+|.|++  ...|..|.   -..+.|.|.++-
T Consensus       401 G~~i~i~v~a~gg~~~lY~f~ik~-ng~~ve~~~Y~~~~~~~f~P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~e  477 (667)
T PRK14081        401 GEEIKIRVIAEGGTNLRYSFIIKK-DGKEEEKIDYGKNNWVNFIPEEKGNYELEVRVKDKYSDKEYDAHTIVYIKVHE  477 (667)
T ss_pred             CCeEEEEEEecCCCeEEEEEEEEE-CCEEEEEeecccccEEEEEECCCeeEEEEEEEecccCchhcccceEEEEEEec
Confidence            333333333333434445555555 7888877777889999999999999965  45666664   236888888753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	171
1olm_A	403	SEC14-like protein 2; lipid-binding protein, chole	97.45
3sd2_A	101	Putative member of DUF3244 protein family; immunog	89.85
2d7n_A	93	Filamin-C; beta-sandwich, immunoglobulin-like fold	88.93
2ee9_A	95	Filamin-B; beta-sandwich, immunoglobulin-like fold	87.96
2d7m_A	115	Filamin-C; beta-sandwich, immunoglobulin-like fold	86.25
4dzg_A	114	PLIG; lysozyme inhibitor, G-type lysozyme binding,	85.98
3rgh_A	100	Filamin-A; cell adhesion, cytoskeleton-complex, di	85.35
2dj4_A	108	Filamin-B; beta-sandwich, immunoglobulin-like fold	84.73
2p9r_A	102	Alpha-2-M, alpha-2-macroglobulin; human alpha2-mac	84.54
2dmb_A	124	Filamin-B; beta-sandwich, immunoglobulin-like fold	84.45
3d33_A	108	Domain of unknown function with AN immunoglobulin	84.42
2dlg_A	102	Filamin-B; beta-sandwich, immunoglobulin-like fold	83.39
3c12_A	138	FLGD, flagellar protein; HOOK capping, IG-like dom	80.96
2d7p_A	112	Filamin-C; beta-sandwich, immunoglobulin-like fold	80.52

>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*

Probab=97.45  E-value=0.002  Score=55.15  Aligned_cols=88  Identities=13%  Similarity=0.117  Sum_probs=62.0

Q ss_pred             EEEEcCCCcceEEEecc-CCcEEEEEEEEEeCCeeeEEEEEEcC-----C-----CcEEEEeeecc----eeeEEEEecc
Q psy189           73 TFELADNARECFFEDIK-RNTSVILEFQVVTGGKYDVDVSIEAP-----T-----KEIIYRQVKSQ----FDTHQFVTLV  137 (171)
Q Consensus        73 tf~l~~~~~~CFye~~~-~~~~v~~~y~V~~gg~~dI~v~V~dP-----~-----g~~v~~~~~~s----~G~f~Fta~~  137 (171)
                      ++.|++|+....--.+. +|..+...|.+.+   .||.|.|+--     +     ...|....+.+    --.-+|.+++
T Consensus       281 ~~~V~~g~~~~v~~~v~~~g~~l~W~f~~~~---~DI~F~v~~~~~~~~~~~~~~~~~v~p~~r~~~~~~~~~G~~~~~~  357 (403)
T 1olm_A          281 SVQISRGSSHQVEYEILFPGCVLRWQFMSDG---ADVGFGIFLKTKMGERQRAGEMTEVLPNQRYNSHLVPEDGTLTCSD  357 (403)
T ss_dssp             EEEECTTCEEEEEEEECSTTCEEEEEEEESS---SCEEEEEEEC----CCCCGGGSEEEEEEEEECTTTSCEEEEEECCS
T ss_pred             EEEEcCCCEEEEEEEEcCCCCEEEEEEEecC---CcEEEEEEEecccccccCCCcceEEeeeeeecCccccccCEEEcCC
Confidence            47888888888777776 6888888888832   3677766621     1     12344332211    1233467999


Q ss_pred             ceeEEEEeecCCCCCcceEEEEEEEE
Q psy189          138 EGTYVVCFSNEFSTYSSALEVISTHA  163 (171)
Q Consensus       138 ~G~Y~~CF~N~~s~~~~K~V~F~i~~  163 (171)
                      +|.|.++|+|.+|.+.+|.|.+.+.+
T Consensus       358 ~G~y~l~fdNs~S~~~~k~l~y~v~v  383 (403)
T 1olm_A          358 PGIYVLRFDNTYSFIHAKKVNFTVEV  383 (403)
T ss_dssp             CEEEEEEEECTTCCCCSEEEEEEEEE
T ss_pred             CeEEEEEEeccccceeceEEEEEEEE
Confidence            99999999999999889999998754

>3sd2_A Putative member of DUF3244 protein family; immunoglobulin-like beta-sandwich, structural genomics, JOIN for structural genomics; HET: MSE; 1.40A {Bacteroides thetaiotaomicron}

Probab=89.85  E-value=1  Score=31.83  Aligned_cols=75  Identities=12%  Similarity=0.123  Sum_probs=52.9

Q ss_pred             ceEEEEEEcCCCcceEEEeccCCcEEEEEEEEEeCCeeeEEEEEEcC-CCcEEEEeeecceeeEEEEec--cceeEEEEe
Q psy189           69 AVELTFELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAP-TKEIIYRQVKSQFDTHQFVTL--VEGTYVVCF  145 (171)
Q Consensus        69 ~~~ltf~l~~~~~~CFye~~~~~~~v~~~y~V~~gg~~dI~v~V~dP-~g~~v~~~~~~s~G~f~Fta~--~~G~Y~~CF  145 (171)
                      .....+.+.|..+.|-|-+   | .+.++|.   ....++.++|++. +|++||+....+-...++...  .+|+|.+=+
T Consensus        15 ~~~rsI~i~P~~~~~A~I~---n-vlsV~F~---~~~~~vTItItNe~TG~~VYs~~~s~p~~i~IdLnge~sG~Y~IeI   87 (101)
T 3sd2_A           15 SNPMGIPIQPTYEKCAILS---N-ILNVSFG---RAKDYAIITVTNKATGEIVHSKTYHNTSIVMIDMSSCEKGEYTIHI   87 (101)
T ss_dssp             -CCCCCCCCCSSEEEEEET---T-EEEEEES---SCCSCEEEEEEETTTCCEEEEEEESSCSEEEEECTTSCSEEEEEEE
T ss_pred             cccceeeecccccccEEEe---C-EEEEEec---cCCCcEEEEEEECCCCcEEEEEeccCCcEEEEEcCCCcCceEEEEE
Confidence            3445566777777888854   5 8888883   3334689999997 799999986666555666654  489998877


Q ss_pred             ecCCC
Q psy189          146 SNEFS  150 (171)
Q Consensus       146 ~N~~s  150 (171)
                      .-...
T Consensus        88 ~~~~~   92 (101)
T 3sd2_A           88 ILNDC   92 (101)
T ss_dssp             EETTE
T ss_pred             EeCCc
Confidence            65443

>2d7n_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=88.93  E-value=0.65  Score=31.93  Aligned_cols=44  Identities=9%  Similarity=0.100  Sum_probs=31.3

Q ss_pred             CeeeEEEEEEcCCCcEEEEe-eeccee--eEEEEeccceeEEEEeec
Q psy189          104 GKYDVDVSIEAPTKEIIYRQ-VKSQFD--THQFVTLVEGTYVVCFSN  147 (171)
Q Consensus       104 g~~dI~v~V~dP~g~~v~~~-~~~s~G--~f~Fta~~~G~Y~~CF~N  147 (171)
                      +..++.+.|.+|+|+.+.-. .+...|  ..+|+.++.|.|.++..=
T Consensus        20 g~~~l~v~V~~PsG~~~~~~v~d~~dGtY~v~ytP~e~G~h~v~V~~   66 (93)
T 2d7n_A           20 QKGELTGEVRMPSGKTARPNITDNKDGTITVRYAPTEKGLHQMGIKY   66 (93)
T ss_dssp             SSSCEEEEEECTTSCEECCEEEECSSSCEEEEECCSSCEEEEEEEEE
T ss_pred             CCCCEEEEEECCCCCccceEEEECCCCEEEEEEEccCCEEEEEEEEE
Confidence            34468999999999865322 233445  446789999999988863

>2ee9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.96  E-value=0.56  Score=32.52  Aligned_cols=45  Identities=11%  Similarity=0.094  Sum_probs=31.9

Q ss_pred             CCeeeEEEEEEcCCCcEEEEe-eecceeeE--EEEeccceeEEEEeec
Q psy189          103 GGKYDVDVSIEAPTKEIIYRQ-VKSQFDTH--QFVTLVEGTYVVCFSN  147 (171)
Q Consensus       103 gg~~dI~v~V~dP~g~~v~~~-~~~s~G~f--~Fta~~~G~Y~~CF~N  147 (171)
                      .+..++.+.|++|+|+.+--. .+...|.|  +|+..+.|.|+++..=
T Consensus        27 ~g~~~ltv~V~~PsG~~~~~~v~d~~dGtY~v~ytP~e~G~h~v~V~~   74 (95)
T 2ee9_A           27 VRKGEITGEVHMPSGKTATPEIVDNKDGTVTVRYAPTEVGLHEMHIKY   74 (95)
T ss_dssp             CCTTSEEEEEECTTSCEECCEEEECSSSCEEEECCCCSSEEEEEEEEE
T ss_pred             CCCCCEEEEEECCCCCccccEEEeCCCCeEEEEEEecCCEeEEEEEEE
Confidence            344578999999999865332 23344544  6778999999998863

>2d7m_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=86.25  E-value=1.2  Score=31.35  Aligned_cols=44  Identities=16%  Similarity=0.175  Sum_probs=30.2

Q ss_pred             CeeeEEEEEEcCCCcEEEEe-eecceeeE--EEEeccceeEEEEeec
Q psy189          104 GKYDVDVSIEAPTKEIIYRQ-VKSQFDTH--QFVTLVEGTYVVCFSN  147 (171)
Q Consensus       104 g~~dI~v~V~dP~g~~v~~~-~~~s~G~f--~Fta~~~G~Y~~CF~N  147 (171)
                      |...+.+.|.+|+|+.+..+ .+...|.|  +|+.++.|.|.+...=
T Consensus        42 G~~~l~V~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~   88 (115)
T 2d7m_A           42 GEGLLTVQILDPEGKPKKANIRDNGDGTYTVSYLPDMSGRYTITIKY   88 (115)
T ss_dssp             CSSCEEEEEECTTSCBCCEEEEECSSSCEEEEECCCSCEEEEEEEEE
T ss_pred             CCCEEEEEEECCCCCeeeeEEEECCCCEEEEEEEeCCCceEEEEEEE
Confidence            33468899999998643222 23455555  5788999999988863

>4dzg_A PLIG; lysozyme inhibitor, G-type lysozyme binding, hydrolase inhib; HET: MLY; 2.02A {Aeromonas hydrophila subsp}

Probab=85.98  E-value=0.2  Score=35.91  Aligned_cols=71  Identities=7%  Similarity=-0.039  Sum_probs=47.9

Q ss_pred             EEEcCCCcceEEEeccCCcEEEEEEEEEeCCeeeEEEEEEcCCCcE---EEEeeecceeeEEEEeccceeEEEEeecC
Q psy189           74 FELADNARECFFEDIKRNTSVILEFQVVTGGKYDVDVSIEAPTKEI---IYRQVKSQFDTHQFVTLVEGTYVVCFSNE  148 (171)
Q Consensus        74 f~l~~~~~~CFye~~~~~~~v~~~y~V~~gg~~dI~v~V~dP~g~~---v~~~~~~s~G~f~Fta~~~G~Y~~CF~N~  148 (171)
                      =.|.++....+--.+.+|..+++..  ....  .+-+.|++|++..   +...+....++|+-+.|.+|.|++=....
T Consensus        22 G~I~g~~~~~Y~~~a~aGQ~l~V~l--s~~~--~~~f~I~~P~~~~~~~l~~g~~~~~~~~~g~LP~sG~Y~i~V~~~   95 (114)
T 4dzg_A           22 GSFTGYDTIHYTLVAXAGQTMTVXI--GGSS--NANFNVFAPGAQPGQAEAIGRNDGDGQWQGALPASGXYLIQVYQM   95 (114)
T ss_dssp             CCCBTTCCEEEECCC-CCCEEEC-C--EEST--TCEEEEECTTCCTTTSCCSEECCTTSCCEEECSSCC-CEEEEECC
T ss_pred             EEecCCCceEEEEEecCCCEEEEEe--CCCC--cEEEEEECCCCCcccceeccccCCcceEEEEecCCCcEEEEEEec
Confidence            3466777788887888888877766  3222  3567899999873   34333344568999999999999988654

>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation, immun like, cytoskeleton, actin-binding, cell junction, shape; HET: CME; 2.44A {Homo sapiens} SCOP: b.1.18.0

Probab=85.35  E-value=3  Score=28.50  Aligned_cols=42  Identities=14%  Similarity=0.150  Sum_probs=29.0

Q ss_pred             eeeEEEEEEcCCCcEEEEe-eecceee--EEEEeccceeEEEEee
Q psy189          105 KYDVDVSIEAPTKEIIYRQ-VKSQFDT--HQFVTLVEGTYVVCFS  146 (171)
Q Consensus       105 ~~dI~v~V~dP~g~~v~~~-~~~s~G~--f~Fta~~~G~Y~~CF~  146 (171)
                      ...+.+.|.+|+|..+.-+ .+...|.  .+|+.++.|.|.+...
T Consensus        38 ~~~l~v~i~~~~g~~~~~~v~d~~dGty~V~Y~p~~~G~y~i~V~   82 (100)
T 3rgh_A           38 SAELTIEICSEAGLPAEVYIQDHGDGTHTITYIPLCPGAYTVTIK   82 (100)
T ss_dssp             SCCEEEEEECTTSCBCEEEEEECSSSEEEEEEECCSSEEEEEEEE
T ss_pred             CceEEEEEECCCCCEeEEEEEeCCCCEEEEEEEeCCCeeEEEEEE
Confidence            3368889999988644332 3344554  4778899999988764

>2dj4_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=84.73  E-value=1.7  Score=30.17  Aligned_cols=44  Identities=23%  Similarity=0.313  Sum_probs=31.1

Q ss_pred             CeeeEEEEEEcCCCcEEEEe-eecceeeE--EEEeccceeEEEEeec
Q psy189          104 GKYDVDVSIEAPTKEIIYRQ-VKSQFDTH--QFVTLVEGTYVVCFSN  147 (171)
Q Consensus       104 g~~dI~v~V~dP~g~~v~~~-~~~s~G~f--~Fta~~~G~Y~~CF~N  147 (171)
                      |...+.+.|.+|+|..+.-+ .+...|.|  +|+.++.|.|.+...-
T Consensus        41 G~~~l~V~i~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~   87 (108)
T 2dj4_A           41 GLAPLEVRVLGPRGLVEPVNVVDNGDGTHTVTYTPSQEGPYMVSVKY   87 (108)
T ss_dssp             CSCCEEEEEECSSSCEECCCCEECSSSEEEEEECCSSCEEEEEEEEE
T ss_pred             CCceEEEEEECCCCCEeeeEEEECCCCEEEEEEEeCCCeeEEEEEEE
Confidence            34468889999999655333 34455655  5778899999988863

>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}

Probab=84.54  E-value=7.2  Score=26.24  Aligned_cols=60  Identities=15%  Similarity=0.119  Sum_probs=38.9

Q ss_pred             CCcEEEEEEEEEeCC-----eeeEEEEEEcCCCcEEEEeee--cceeeE--EEEec---cceeEEEEeecCC
Q psy189           90 RNTSVILEFQVVTGG-----KYDVDVSIEAPTKEIIYRQVK--SQFDTH--QFVTL---VEGTYVVCFSNEF  149 (171)
Q Consensus        90 ~~~~v~~~y~V~~gg-----~~dI~v~V~dP~g~~v~~~~~--~s~G~f--~Fta~---~~G~Y~~CF~N~~  149 (171)
                      .|++|.+..-+....     ...+.+.|.||+|+.+.+...  ...|.+  .|..+   ..|.|++-.....
T Consensus        15 PGetV~~~~~~~~~~~~p~~~~~~~v~l~dp~g~~v~~~~~~~~~~G~~~~~f~Lp~~~~~G~y~i~~~~~~   86 (102)
T 2p9r_A           15 PGQTVKFRVVSMDENFHPLNELIPLVYIQDPKGNRIAQWQSFQLEGGLKQFSFPLSSEPFQGSYKVVVQKKS   86 (102)
T ss_dssp             TTCEEEEEEEEECGGGCBCCCEEEEEEEECTTSCEEEEEEEEECBTTEEEEEEECCSSCCCEEEEEEEECTT
T ss_pred             CCCEEEEEEEEECCCCcCCCCCceEEEEECCCCCEEEEEEeecCCCCEEEEEEECCCCCCCeeEEEEEEECC
Confidence            477777666555321     223688999999999987522  234444  45543   4799999997643

>2dmb_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=84.45  E-value=1.6  Score=31.26  Aligned_cols=43  Identities=21%  Similarity=0.295  Sum_probs=29.7

Q ss_pred             CeeeEEEEEEcCCCcEEEEe-eecceeeE--EEEeccceeEEEEee
Q psy189          104 GKYDVDVSIEAPTKEIIYRQ-VKSQFDTH--QFVTLVEGTYVVCFS  146 (171)
Q Consensus       104 g~~dI~v~V~dP~g~~v~~~-~~~s~G~f--~Fta~~~G~Y~~CF~  146 (171)
                      |...+.+.|.+|+|..+..+ .+...|.|  +|+.++.|.|.+...
T Consensus        41 G~~~l~V~I~~p~g~~v~~~v~d~~dGty~V~Y~p~~~G~y~I~V~   86 (124)
T 2dmb_A           41 GKGKVTCTVLTPDGTEAEADVIENEDGTYDIFYTAAKPGTYVIYVR   86 (124)
T ss_dssp             CSCCEEEEEECTTSCBCCCEEEECTTSCEEEEEECSSCEEEEEEEE
T ss_pred             CCCcEEEEEECCCCCEEeeEEEeCCCCEEEEEEEcCCCEEEEEEEE
Confidence            33468889999998644322 23344544  688999999999886

>3d33_A Domain of unknown function with AN immunoglobulin beta-sandwich fold; structural genomics, joint center for structural genomics; HET: MSE; 1.70A {Bacteroides vulgatus atcc 8482}

Probab=84.42  E-value=6.7  Score=27.68  Aligned_cols=57  Identities=11%  Similarity=0.109  Sum_probs=41.4

Q ss_pred             CcEEEEEEEEEeCCeeeEEEEEE-cCCCcEEEEeeecce--eeEEEEec--cceeEEEEeecCCC
Q psy189           91 NTSVILEFQVVTGGKYDVDVSIE-APTKEIIYRQVKSQF--DTHQFVTL--VEGTYVVCFSNEFS  150 (171)
Q Consensus        91 ~~~v~~~y~V~~gg~~dI~v~V~-dP~g~~v~~~~~~s~--G~f~Fta~--~~G~Y~~CF~N~~s  150 (171)
                      |..+.++|   .....++.+.|+ +.+|++||++.-...  ..+.+...  .+|+|++=+.+...
T Consensus        37 ~~~L~I~F---~~~~~~vtItI~~~~tG~iVY~~~v~~~~~~~~~I~L~~~~~G~Y~L~i~~~~~   98 (108)
T 3d33_A           37 GYLLTLKN---ASPDRDMTIRITDMAKGGVVYENDIPEVQSAYITISIANFPAEEYKLEITGTPS   98 (108)
T ss_dssp             TTEEEEEE---SSCCSEEEEEEEETTTCCEEEEEEECGGGTTEEEEECTTSCSEEEEEEEEEESS
T ss_pred             CCEEEEEE---CCcCCCEEEEEEECCCCcEEEEEeecCCCCcEEEEEcCCccCceEEEEEEeCCC
Confidence            55677777   233447899999 899999999754332  46677766  68999999988733

>2dlg_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=83.39  E-value=0.72  Score=32.19  Aligned_cols=44  Identities=18%  Similarity=0.295  Sum_probs=31.6

Q ss_pred             CeeeEEEEEEcCCCcEEEEe-eecceeeE--EEEeccceeEEEEeec
Q psy189          104 GKYDVDVSIEAPTKEIIYRQ-VKSQFDTH--QFVTLVEGTYVVCFSN  147 (171)
Q Consensus       104 g~~dI~v~V~dP~g~~v~~~-~~~s~G~f--~Fta~~~G~Y~~CF~N  147 (171)
                      +..++.+.|.+|+|..+--. .+...|.|  +|+.++.|.|.+...-
T Consensus        29 g~~~l~v~v~~P~G~~~~~~v~d~~dGty~v~ytP~e~G~h~v~V~~   75 (102)
T 2dlg_A           29 NSSDMSAHVTSPSGRVTEAEIVPMGKNSHCVRFVPQEMGVHTVSVKY   75 (102)
T ss_dssp             CGGGCEEEEECTTSCEEECEEEECSSSEEEEEBCCCTTCEEEEEEES
T ss_pred             CCCCEEEEEECCCCCEeeeEEEECCCCEEEEEEEecCCEeEEEEEEE
Confidence            34468999999999865443 33445555  5788999999988863

>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV}

Probab=80.96  E-value=13  Score=26.72  Aligned_cols=53  Identities=11%  Similarity=0.021  Sum_probs=38.5

Q ss_pred             EEEEEEEEeCCeeeEEEEEEcCCCcEEEEee--ecceeeEEEEec---------cceeEEEEeecC
Q psy189           94 VILEFQVVTGGKYDVDVSIEAPTKEIIYRQV--KSQFDTHQFVTL---------VEGTYVVCFSNE  148 (171)
Q Consensus        94 v~~~y~V~~gg~~dI~v~V~dP~g~~v~~~~--~~s~G~f~Fta~---------~~G~Y~~CF~N~  148 (171)
                      ..+.|. . .....+.+.|+|.+|++|.+-+  ..+.|.+.|+-.         .+|.|++.+.-.
T Consensus        29 ~~~~~~-~-~~a~~v~v~I~d~~G~~V~t~~~~~~~aG~~~~~WDg~d~~G~~~~~G~Y~~~v~a~   92 (138)
T 3c12_A           29 AKGVVA-A-TSAGFVNFEITDANGTFVKQLSVPASAAGEVSFAWDGTDANGNRMAAGKYGITATQT   92 (138)
T ss_dssp             EEEEEE-E-SSSEEEEEEEECSSCCEEEEEEEEESSSEEEEEEECSBCTTSCBCCSEEEEEEEEEE
T ss_pred             EEEEEe-c-CCCCEEEEEEEeCCCCEEEEEEcCCcCCceEEEEECCcCCCCCCCCCceEEEEEEEE
Confidence            456666 3 4455799999999999998754  356777777743         369999999633

>2d7p_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10 PDB: 2eeb_A

Probab=80.52  E-value=2.6  Score=29.61  Aligned_cols=40  Identities=15%  Similarity=0.204  Sum_probs=28.5

Q ss_pred             eEEEEEEcCCCcEEEEe-eeccee--eEEEEeccceeEEEEee
Q psy189          107 DVDVSIEAPTKEIIYRQ-VKSQFD--THQFVTLVEGTYVVCFS  146 (171)
Q Consensus       107 dI~v~V~dP~g~~v~~~-~~~s~G--~f~Fta~~~G~Y~~CF~  146 (171)
                      ++.+.|.+|+|..+-.. .....|  ..+|+.++.|.|.+...
T Consensus        42 ~l~v~V~~P~g~~~~~~v~d~~~gty~v~ytP~~~G~h~v~V~   84 (112)
T 2d7p_A           42 VIDARVHTPSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVK   84 (112)
T ss_dssp             CEEEEEECSSSCBCCCEECSCBTTEEEEEECCSSCEEEEEEEE
T ss_pred             CEEEEEECCCCCeeeeEEEeCCCCeEEEEEEcCCCEeEEEEEE
Confidence            68899999999754332 223344  45788999999988775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	171
d1olma2	119	Supernatant protein factor (SPF), C-terminal domai	98.2
d2d7ma1	102	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	94.04
d2j3sa2	88	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	90.86
d2bp3a1	92	Filamin a {Human (Homo sapiens) [TaxId: 9606]}	90.34
d2dmba1	111	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	90.18
d2nqca1	97	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	89.94
d2diaa1	100	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	89.91
d2d7na1	80	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	89.83
d2w0pa1	92	Filamin a {Human (Homo sapiens) [TaxId: 9606]}	89.73
d1v05a_	96	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	89.73
d2dj4a1	101	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	88.35
d2d7pa1	99	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	88.34
d2dmca1	103	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	86.67
d2di8a1	98	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	85.25
d2dica1	98	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	85.21
d1qfha2	108	F-actin cross-linking gelation factor (ABP-120) re	85.04
d1qfha1	104	F-actin cross-linking gelation factor (ABP-120) re	81.36

>d1olma2 b.132.1.1 (A:275-393) Supernatant protein factor (SPF), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Supernatant protein factor (SPF), C-terminal domain
superfamily: Supernatant protein factor (SPF), C-terminal domain
family: Supernatant protein factor (SPF), C-terminal domain
domain: Supernatant protein factor (SPF), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=2e-05  Score=55.82  Aligned_cols=88  Identities=13%  Similarity=0.115  Sum_probs=60.4

Q ss_pred             EEEEcCCCcceEEEecc-CCcEEEEEEEEEeCCeeeEEEEEEcC--C--------CcEEEEeeecc----eeeEEEEecc
Q psy189           73 TFELADNARECFFEDIK-RNTSVILEFQVVTGGKYDVDVSIEAP--T--------KEIIYRQVKSQ----FDTHQFVTLV  137 (171)
Q Consensus        73 tf~l~~~~~~CFye~~~-~~~~v~~~y~V~~gg~~dI~v~V~dP--~--------g~~v~~~~~~s----~G~f~Fta~~  137 (171)
                      ++.|++|.....--.+. +|..+...|++.+   .||.|.|.-.  .        ...|....+..    --.=.|.+++
T Consensus         7 tvtV~~G~~~~v~~~v~~~Gs~l~WeF~t~~---~DI~Fgv~~~~~~~~~~~~~~~~~v~p~~r~~s~~~p~~g~~~~~~   83 (119)
T d1olma2           7 SVQISRGSSHQVEYEILFPGCVLRWQFMSDG---ADVGFGIFLKTKMGERQRAGEMTEVLPNQRYNSHLVPEDGTLTCSD   83 (119)
T ss_dssp             EEEECTTCEEEEEEEECSTTCEEEEEEEESS---SCEEEEEEEC----CCCCGGGSEEEEEEEEECTTTSCEEEEEECCS
T ss_pred             EEEECCCCEEEEEEEEeCCCcEEEEEEEeCC---ccEEEEEEEecccCCccccCceEEEeeeEEecCCceeEccEEEcCC
Confidence            56788888755555554 6899999997742   3677776532  1        12344332221    1123477889


Q ss_pred             ceeEEEEeecCCCCCcceEEEEEEEE
Q psy189          138 EGTYVVCFSNEFSTYSSALEVISTHA  163 (171)
Q Consensus       138 ~G~Y~~CF~N~~s~~~~K~V~F~i~~  163 (171)
                      +|.|.+||+|.+|.+.+|.|.+.+++
T Consensus        84 ~G~Y~l~FDNs~S~~~sK~l~Y~i~v  109 (119)
T d1olma2          84 PGIYVLRFDNTYSFIHAKKVNFTVEV  109 (119)
T ss_dssp             CEEEEEEEECTTCCCCSEEEEEEEEE
T ss_pred             CEEEEEEEeCCcceEEeeEEEEEEEE
Confidence            99999999999999999999999875

>d2d7ma1 b.1.18.10 (A:8-109) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.04  E-value=0.038  Score=36.89  Aligned_cols=44  Identities=16%  Similarity=0.189  Sum_probs=31.9

Q ss_pred             CCeeeEEEEEEcCCCcEEEEe-eecceeeE--EEEeccceeEEEEee
Q psy189          103 GGKYDVDVSIEAPTKEIIYRQ-VKSQFDTH--QFVTLVEGTYVVCFS  146 (171)
Q Consensus       103 gg~~dI~v~V~dP~g~~v~~~-~~~s~G~f--~Fta~~~G~Y~~CF~  146 (171)
                      .|..++.+.|.+|+|+.+-.+ .....|.|  +|+.++.|.|++...
T Consensus        34 aG~g~l~v~i~~p~g~~~~~~v~~~~dg~y~v~y~P~~~G~h~i~V~   80 (102)
T d2d7ma1          34 AGEGLLTVQILDPEGKPKKANIRDNGDGTYTVSYLPDMSGRYTITIK   80 (102)
T ss_dssp             SCSSCEEEEEECTTSCBCCEEEEECSSSCEEEEECCCSCEEEEEEEE
T ss_pred             CCCCcEEEEEEeCCCCEeeeEEEeCCCcEEEEEEEECCCEeEEEEEE
Confidence            344568999999998755332 33445655  899999999998875

>d2j3sa2 b.1.18.10 (A:2149-2236) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.86  E-value=0.053  Score=35.20  Aligned_cols=45  Identities=20%  Similarity=0.219  Sum_probs=28.8

Q ss_pred             eCCeeeEEEEEEcCCCcEEEEe-eecceeeE--EEEeccceeEEEEee
Q psy189          102 TGGKYDVDVSIEAPTKEIIYRQ-VKSQFDTH--QFVTLVEGTYVVCFS  146 (171)
Q Consensus       102 ~gg~~dI~v~V~dP~g~~v~~~-~~~s~G~f--~Fta~~~G~Y~~CF~  146 (171)
                      ..+..++.+.|++|+|+.+-.+ .....|.|  +|+..+.|+|.+-..
T Consensus        20 ~a~~g~l~v~v~~P~g~~~~~~v~~~~~g~y~v~y~P~~~G~h~i~V~   67 (88)
T d2j3sa2          20 EISIQDMTAQVTSPSGKTHEAEIVEGENHTYCIRFVPAEMGTHTVSVK   67 (88)
T ss_dssp             ---CCCEEEEEECTTCCEEEEBC-------CCCBCCCCSCEEEEEEEE
T ss_pred             CCCCCcEEEEEECCCCCEEeeEEEECCCCEEEEEEEECCceeEEEEEE
Confidence            3445579999999999987654 33455655  589999999988774

>d2bp3a1 b.1.18.10 (A:1863-1954) Filamin a {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.34  E-value=0.53  Score=30.26  Aligned_cols=41  Identities=24%  Similarity=0.432  Sum_probs=31.2

Q ss_pred             CeeeEEEEEEcCCCcEEEEeeecceeeE--EEEeccceeEEEEe
Q psy189          104 GKYDVDVSIEAPTKEIIYRQVKSQFDTH--QFVTLVEGTYVVCF  145 (171)
Q Consensus       104 g~~dI~v~V~dP~g~~v~~~~~~s~G~f--~Fta~~~G~Y~~CF  145 (171)
                      +..++.+.|.+|++..+.-. ....|.|  +|+.++.|.|++-.
T Consensus        32 G~g~l~v~v~~p~~~~~~v~-~~~dg~y~v~ytP~~~G~h~i~V   74 (92)
T d2bp3a1          32 GEGGLSLAIEGPSKAEISCT-DNQDGTCSVSYLPVLPGDYSILV   74 (92)
T ss_dssp             CSEEEEEEEEESSCCEEEEE-ECSSSEEEEEEECSSCEEEEEEE
T ss_pred             CCCceEEEEEeCCCceEEEE-ECCCCEEEEEEEECCCccEEEEE
Confidence            44578899999999876543 3455766  59999999998765

>d2dmba1 b.1.18.10 (A:8-118) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.18  E-value=0.25  Score=33.06  Aligned_cols=44  Identities=20%  Similarity=0.292  Sum_probs=32.3

Q ss_pred             CCeeeEEEEEEcCCCcEEEEe-eecceee--EEEEeccceeEEEEee
Q psy189          103 GGKYDVDVSIEAPTKEIIYRQ-VKSQFDT--HQFVTLVEGTYVVCFS  146 (171)
Q Consensus       103 gg~~dI~v~V~dP~g~~v~~~-~~~s~G~--f~Fta~~~G~Y~~CF~  146 (171)
                      .+...+.+.|.+|+|+.+--. .+...|.  .+|+..+.|.|++...
T Consensus        33 ag~g~l~v~v~~p~g~~~~~~v~d~~~G~y~v~f~P~~~G~h~i~V~   79 (111)
T d2dmba1          33 AGKGKVTCTVLTPDGTEAEADVIENEDGTYDIFYTAAKPGTYVIYVR   79 (111)
T ss_dssp             SCSCCEEEEEECTTSCBCCCEEEECTTSCEEEEEECSSCEEEEEEEE
T ss_pred             CCCCcEEEEEEECCCCEEEeEEEECCCCEEEEEEEECCCCCEEEEEE
Confidence            344568999999998765433 3345564  5789999999999885

>d2nqca1 b.1.18.10 (A:2482-2578) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.94  E-value=0.56  Score=30.37  Aligned_cols=43  Identities=16%  Similarity=0.344  Sum_probs=33.2

Q ss_pred             CeeeEEEEEEcCCCcEEEEeeecceeeEEEEeccceeEEEEee
Q psy189          104 GKYDVDVSIEAPTKEIIYRQVKSQFDTHQFVTLVEGTYVVCFS  146 (171)
Q Consensus       104 g~~dI~v~V~dP~g~~v~~~~~~s~G~f~Fta~~~G~Y~~CF~  146 (171)
                      +..++.+.|.+|++..+--+.+...-..+|+..+.|.|.+...
T Consensus        33 g~~~l~v~v~~p~~~~~~~~~~~~~y~v~y~P~~~G~h~i~V~   75 (97)
T d2nqca1          33 GSGALSVTIDGPSKVQLDCRECPEGHVVTYTPMAPGNYLIAIK   75 (97)
T ss_dssp             CSCCEEEEEESSSCCEEEEEEETTEEEEEEECCSCEEEEEEEE
T ss_pred             CCCceEEEEEcCCCceEEEEECCCcEEEEEEeCCCEeEEEEEE
Confidence            3446889999999987765554444567899999999999884

>d2diaa1 b.1.18.10 (A:8-107) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.91  E-value=0.27  Score=32.07  Aligned_cols=44  Identities=11%  Similarity=0.169  Sum_probs=32.1

Q ss_pred             CCeeeEEEEEEcCCCcEEEEe-eeccee--eEEEEeccceeEEEEee
Q psy189          103 GGKYDVDVSIEAPTKEIIYRQ-VKSQFD--THQFVTLVEGTYVVCFS  146 (171)
Q Consensus       103 gg~~dI~v~V~dP~g~~v~~~-~~~s~G--~f~Fta~~~G~Y~~CF~  146 (171)
                      .+..++.+.|.+|+|+.+-.+ .....|  ..+|+..+.|.|++...
T Consensus        32 ag~~~l~v~i~~~~g~~~~~~v~~~~dg~y~v~y~P~~~G~h~i~V~   78 (100)
T d2diaa1          32 AGPGALGLEAVSDSGTKAEVSIQNNKDGTYAVTYVPLTAGMYTLTMK   78 (100)
T ss_dssp             CCSCCEEEEEEETTTEECEEEEEECTTSEEEEEEECSSCEEEEEEEE
T ss_pred             CCCCcEEEEEEeCCCCEeeEEEEECCCCEEEEEEEeCcCccEEEEEE
Confidence            344568899999998865433 334444  55789999999999885

>d2d7na1 b.1.18.10 (A:8-87) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.83  E-value=0.28  Score=31.11  Aligned_cols=45  Identities=9%  Similarity=0.073  Sum_probs=31.8

Q ss_pred             CCeeeEEEEEEcCCCcEEEEe-eeccee--eEEEEeccceeEEEEeec
Q psy189          103 GGKYDVDVSIEAPTKEIIYRQ-VKSQFD--THQFVTLVEGTYVVCFSN  147 (171)
Q Consensus       103 gg~~dI~v~V~dP~g~~v~~~-~~~s~G--~f~Fta~~~G~Y~~CF~N  147 (171)
                      .+..++.+.|++|+|+.+-.. .....|  ..+|+..+.|.|++=..-
T Consensus        12 ~~~g~l~~~v~~P~G~~~~~~v~~~~dg~y~v~y~P~~~G~h~v~V~~   59 (80)
T d2d7na1          12 VQKGELTGEVRMPSGKTARPNITDNKDGTITVRYAPTEKGLHQMGIKY   59 (80)
T ss_dssp             CSSSCEEEEEECTTSCEECCEEEECSSSCEEEEECCSSCEEEEEEEEE
T ss_pred             CCCCcEEEEEECCCCCEeceEEEECCCCEEEEEEEECCcEEEEEEEEE
Confidence            345578999999999876433 233445  457889999999776543

>d2w0pa1 b.1.18.10 (A:2237-2328) Filamin a {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.73  E-value=0.35  Score=31.31  Aligned_cols=42  Identities=21%  Similarity=0.347  Sum_probs=31.3

Q ss_pred             CeeeEEEEEEcCCCcEEEEeeecceeeE--EEEeccceeEEEEee
Q psy189          104 GKYDVDVSIEAPTKEIIYRQVKSQFDTH--QFVTLVEGTYVVCFS  146 (171)
Q Consensus       104 g~~dI~v~V~dP~g~~v~~~~~~s~G~f--~Fta~~~G~Y~~CF~  146 (171)
                      +..++.+.|.+|++..+.-. +...|.|  +|+..+.|.|++...
T Consensus        31 g~g~l~v~v~gp~~~~v~v~-d~~dg~y~v~ytP~~~G~y~i~V~   74 (92)
T d2w0pa1          31 GAGGLAIAVEGPSKAEISFE-DRKDGSCGVAYVVQEPGDYEVSVK   74 (92)
T ss_dssp             CSCCEEEEEEESSCCEEEEE-ECTTSCEEEEEECSSCEEEEEEEE
T ss_pred             CCCceEEEEEeCCceEEEEE-ECCCCEEEEEEEECCCceEEEEEE
Confidence            34467888999998766443 3455655  899999999998874

>d1v05a_ b.1.18.10 (A:) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.73  E-value=0.28  Score=31.81  Aligned_cols=42  Identities=10%  Similarity=0.090  Sum_probs=30.0

Q ss_pred             eeeEEEEEEcCCCcEEEEe-eecceee--EEEEeccceeEEEEee
Q psy189          105 KYDVDVSIEAPTKEIIYRQ-VKSQFDT--HQFVTLVEGTYVVCFS  146 (171)
Q Consensus       105 ~~dI~v~V~dP~g~~v~~~-~~~s~G~--f~Fta~~~G~Y~~CF~  146 (171)
                      ..++.+.|.+|+|+.+--. .+...|.  .+|+.++.|+|++...
T Consensus        36 ~g~l~v~v~~p~g~~v~~~v~~~~~g~y~v~y~P~~~G~~~v~V~   80 (96)
T d1v05a_          36 TNMMMVGVHGPKTPCEEVYVKHMGNRVYNVTYTVKEKGDYILIVK   80 (96)
T ss_dssp             SCCEEEEEECSSSCCSEEEEEECSTTEEEEEEECSSCEEEEEEEE
T ss_pred             CCceEEEEEECCCCeeeeEEEECCCCEEEEEEEeCCCccEEEEEE
Confidence            3368899999998654322 3344454  5889999999999885

>d2dj4a1 b.1.18.10 (A:8-108) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.35  E-value=0.4  Score=31.36  Aligned_cols=43  Identities=21%  Similarity=0.269  Sum_probs=31.3

Q ss_pred             CeeeEEEEEEcCCCcEEEEe-eecceee--EEEEeccceeEEEEee
Q psy189          104 GKYDVDVSIEAPTKEIIYRQ-VKSQFDT--HQFVTLVEGTYVVCFS  146 (171)
Q Consensus       104 g~~dI~v~V~dP~g~~v~~~-~~~s~G~--f~Fta~~~G~Y~~CF~  146 (171)
                      |..++++.|.+|+|+.+--+ .+...|.  .+|+..+.|.|++-..
T Consensus        34 G~g~l~v~i~~p~g~~~~~~v~~~~dG~y~v~y~P~~~G~y~i~V~   79 (101)
T d2dj4a1          34 GLAPLEVRVLGPRGLVEPVNVVDNGDGTHTVTYTPSQEGPYMVSVK   79 (101)
T ss_dssp             CSCCEEEEEECSSSCEECCCCEECSSSEEEEEECCSSCEEEEEEEE
T ss_pred             CCCCEEEEEEECCCCEeEEEEEeCCCCEEEEEEEeCCCeeEEEEEE
Confidence            44468999999999876433 3444555  4788999999988774

>d2d7pa1 b.1.18.10 (A:8-106) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.34  E-value=0.3  Score=31.98  Aligned_cols=45  Identities=16%  Similarity=0.244  Sum_probs=32.0

Q ss_pred             CCeeeEEEEEEcCCCcEEEEe-eecceeeE--EEEeccceeEEEEeec
Q psy189          103 GGKYDVDVSIEAPTKEIIYRQ-VKSQFDTH--QFVTLVEGTYVVCFSN  147 (171)
Q Consensus       103 gg~~dI~v~V~dP~g~~v~~~-~~~s~G~f--~Fta~~~G~Y~~CF~N  147 (171)
                      ++..++++.|.+|+|..+-.. .....|.|  +|+..+.|.|++...-
T Consensus        31 ~~~g~l~v~v~~p~g~~v~~~v~~~~dg~y~v~y~P~~~G~~~i~V~~   78 (99)
T d2d7pa1          31 GARGVIDARVHTPSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVKF   78 (99)
T ss_dssp             TCCSCEEEEEECSSSCBCCCEECSCBTTEEEEEECCSSCEEEEEEEEE
T ss_pred             CCCCeEEEEEEcCCCCEeeeEEEeCCCCEEEEEEEECCCCcEEEEEEE
Confidence            344468999999998765433 23345555  6889999999888753

>d2dmca1 b.1.18.10 (A:8-110) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.67  E-value=0.088  Score=34.77  Aligned_cols=42  Identities=17%  Similarity=0.110  Sum_probs=29.6

Q ss_pred             CeeeEEEEEEcCCCcEEEEe-eecceeeE--EEEeccceeEEEEe
Q psy189          104 GKYDVDVSIEAPTKEIIYRQ-VKSQFDTH--QFVTLVEGTYVVCF  145 (171)
Q Consensus       104 g~~dI~v~V~dP~g~~v~~~-~~~s~G~f--~Fta~~~G~Y~~CF  145 (171)
                      +..++.+.|++|+|+.+-.+ .....|.|  +|+..+.|.|++=.
T Consensus        36 g~g~l~v~v~~P~g~~v~~~v~~~~dg~y~v~f~P~~~G~h~i~V   80 (103)
T d2dmca1          36 DLSSLTASIKAPSGRDEPCLLKRLPNNHIGISFIPREVGEHLVSI   80 (103)
T ss_dssp             CSTTBCCEEECTTSCBCCEEEEEETTTEEEEEECCCSCEEEEEEC
T ss_pred             CCCcEEEEEECCCCCEeccEEEECCCCEEEEEEEeCCceeEEEEE
Confidence            44468899999999765322 33445555  68999999998644

>d2di8a1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.25  E-value=0.52  Score=30.71  Aligned_cols=42  Identities=24%  Similarity=0.379  Sum_probs=30.9

Q ss_pred             CeeeEEEEEEcCCCcEEEEeeecceeeE--EEEeccceeEEEEee
Q psy189          104 GKYDVDVSIEAPTKEIIYRQVKSQFDTH--QFVTLVEGTYVVCFS  146 (171)
Q Consensus       104 g~~dI~v~V~dP~g~~v~~~~~~s~G~f--~Fta~~~G~Y~~CF~  146 (171)
                      |..++.+.|.+|++..+.-. ....|.|  +|+..+.|.|.+...
T Consensus        33 G~g~l~v~i~gp~~~~v~v~-~~~dg~y~v~y~P~~~G~y~i~V~   76 (98)
T d2di8a1          33 GYGGISLAVEGPSKVDIQTE-DLEDGTCKVSYFPTVPGVYIVSTK   76 (98)
T ss_dssp             CBCCEEEEEESSSCCCEECC-BCTTSCEEEEECCCSCSEEEEEEE
T ss_pred             CCCceEEEEEeCCCceEEEE-ECCCCEEEEEEEECCCceEEEEEE
Confidence            45578899999988766433 3345655  688999999988874

>d2dica1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.21  E-value=0.55  Score=30.45  Aligned_cols=41  Identities=15%  Similarity=0.358  Sum_probs=29.8

Q ss_pred             eeeEEEEEEcCCCcEEEEeeecceeeE--EEEeccceeEEEEee
Q psy189          105 KYDVDVSIEAPTKEIIYRQVKSQFDTH--QFVTLVEGTYVVCFS  146 (171)
Q Consensus       105 ~~dI~v~V~dP~g~~v~~~~~~s~G~f--~Fta~~~G~Y~~CF~  146 (171)
                      ..++.+.|.+|++..+--. ....|.|  +|+..+.|.|++...
T Consensus        34 ~g~l~v~v~~p~~~~~~v~-~~~dg~y~v~y~P~~~G~y~i~V~   76 (98)
T d2dica1          34 IGGLGITVEGPSESKINCR-DNKDGSCSAEYIPFAPGDYDVNIT   76 (98)
T ss_dssp             SSCEEEEEESSSCCCCEEE-ECSSSCEEEEECCSSCEEEEEEEE
T ss_pred             CCCcEEEEEeCCCcEEEEE-ECCCCEEEEEEEECCCceEEEEEE
Confidence            3468888999988765432 3345555  588999999999884

>d1qfha2 b.1.18.10 (A:750-857) F-actin cross-linking gelation factor (ABP-120) repeats {Dictyostelium discoideum [TaxId: 44689]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: F-actin cross-linking gelation factor (ABP-120) repeats
species: Dictyostelium discoideum [TaxId: 44689]

Probab=85.04  E-value=2.5  Score=27.80  Aligned_cols=40  Identities=23%  Similarity=0.360  Sum_probs=28.0

Q ss_pred             eEEEEEEcCCCcEEEEeeecceeeE--EEEeccceeEEEEee
Q psy189          107 DVDVSIEAPTKEIIYRQVKSQFDTH--QFVTLVEGTYVVCFS  146 (171)
Q Consensus       107 dI~v~V~dP~g~~v~~~~~~s~G~f--~Fta~~~G~Y~~CF~  146 (171)
                      .+.+.|.+|.+.+-..-.....|.|  +|+....|.|.+...
T Consensus        32 ~~~v~i~gp~~~~~~~v~d~~dGty~v~y~p~~~G~y~v~V~   73 (108)
T d1qfha2          32 KFEVSITGPAEEITLDAIDNQDGTYTAAYSLVGNGRFSTGVK   73 (108)
T ss_dssp             CEEEEEEECCSEEEEEEEECSSSEEEEEEEEESSEEEEEEEE
T ss_pred             eEEEEEECCCcccccEEEECCCCEEEEEEEECcceeEEEEEE
Confidence            5778889998764433334455555  678889999988774

>d1qfha1 b.1.18.10 (A:646-749) F-actin cross-linking gelation factor (ABP-120) repeats {Dictyostelium discoideum [TaxId: 44689]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: F-actin cross-linking gelation factor (ABP-120) repeats
species: Dictyostelium discoideum [TaxId: 44689]

Probab=81.36  E-value=0.84  Score=29.62  Aligned_cols=40  Identities=23%  Similarity=0.334  Sum_probs=30.1

Q ss_pred             eEEEEEEcCCCcEEEEe-eecceeeE--EEEeccceeEEEEee
Q psy189          107 DVDVSIEAPTKEIIYRQ-VKSQFDTH--QFVTLVEGTYVVCFS  146 (171)
Q Consensus       107 dI~v~V~dP~g~~v~~~-~~~s~G~f--~Fta~~~G~Y~~CF~  146 (171)
                      .+.+.|.+|+|..+-.. .+...|.|  +|++...|.|++-..
T Consensus        45 ~~~v~v~~p~g~~~~~~v~d~~dGtY~v~y~p~~~G~~~i~V~   87 (104)
T d1qfha1          45 PFEVAINGPDGLVVDAKVTDNNDGTYGVVYDAPVEGNYNVNVT   87 (104)
T ss_dssp             CEEEEEECGGGCEECCEEEECSSSEEEEEECCCSSEEEEEEEE
T ss_pred             eeEEEEECCCCCEEeeEEEECCCCEEEEEEEeCCCEeEEEEEE
Confidence            58899999998876433 33455666  788999999998774