Psyllid ID: psy1918

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-
Protein Sequence
MNVYWKFRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEERRGGGG
Secondary Structure (PSIPRED)
ccccccccccccccccEEcccccHHHHHHHHHHHHccccEEEEEcccEEEEEEEccccccccccccccEEEcccEEEEEEccHHHHHHHHHHHHHHHHHcHHHccccccHHHHHHHHHHHHHHHHcccccccccEEEEEEEEEccccEEEEEcccccccccEEEEEccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccccccEEEEEEEccccEEEccHHHHHHHHHHHHccHHccccc
Secondary Structure Prediction (SSPRO)
ccEEEEcHHHHcccccccccccccHHHHHHHHHHHccccEEEEEcccEEEEEEEcccccccEcccccEEEEEccEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccEcccccccEEEEEEEEEccEEEEEEEcccccEEEEcEEEEcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccEEEEEEcccccEEEccHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mnvywkfrnqydsdvtvwspqgrlhQVEYAMEAVKQgsatvglknKTHAVIIALKRAASELAAHQKKIIViddhmglsfagLTADARILARFMRMECLNykyahkdtlpVFRLISIVGNKMQVCtqrydkrpygvgllvagyddagphiyqtcpssnyydvkamaigSRSQSARTYLEKRladfpeasLEEIVKHGLRALRdtlpndselttknvsiglvgqnqkfktlderetghylsliegeerrgggg
Flexible Loop (DISEMBL)
mnvywkfrnqydsdvtvwspQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRdtlpndselttknvsiglvgqnqkfktlderetghylsliegeerrgggg
Low Complexity Region (SEG)
MNVYWKFRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIegeerrgggg
Disordered region (IsUnstruct)
**VYWKFRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGS******TYLEKRLADFPEASLEEIVKHGLRALRD**********KNVSIGLVGQNQKF**********Y**************
Disordered Region (DISOPRED)
**VYWKFRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASE**AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLS************
Disordered Region (DISEMBL)
MNVYWKFRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEG********
Disordered Region (DISPRO)
MNVYWKFRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGE*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNVYWKFRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEERRGGGG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	251	2.2.26 [Sep-21-2011]
Q9R1P4	263	Proteasome subunit alpha	yes	N/A	0.960	0.916	0.655	2e-96
Q3T0X5	263	Proteasome subunit alpha	yes	N/A	0.960	0.916	0.655	3e-96
P25786	263	Proteasome subunit alpha	yes	N/A	0.960	0.916	0.655	3e-96
Q5REN2	263	Proteasome subunit alpha	yes	N/A	0.960	0.916	0.655	5e-96
P18420	263	Proteasome subunit alpha	yes	N/A	0.960	0.916	0.647	7e-96
Q4R3H2	263	Proteasome subunit alpha	N/A	N/A	0.960	0.916	0.651	1e-95
O42265	260	Proteasome subunit alpha	yes	N/A	0.936	0.903	0.646	3e-92
Q27562	248	Proteasome subunit alpha	yes	N/A	0.952	0.963	0.604	2e-86
P12881	279	Proteasome subunit alpha	yes	N/A	0.932	0.838	0.603	5e-84
O14250	272	Probable proteasome subun	yes	N/A	0.924	0.852	0.556	2e-74

>sp|Q9R1P4|PSA1_MOUSE Proteasome subunit alpha type-1 OS=Mus musculus GN=Psma1 PE=1 SV=1

 Score =  352 bits (902), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 158/241 (65%), Positives = 205/241 (85%)

Query: 7   FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK 66
           FRNQYD+DVTVWSPQGR+HQ+EYAMEAVKQGSATVGLK+KTHAV++ALKRA SELAAHQK
Sbjct: 2   FRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQK 61

Query: 67  KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
           KI+ +D+H+G+S AGLTADAR+L  FMR ECL+ ++     LPV RL+S++G+K Q+ TQ
Sbjct: 62  KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQ 121

Query: 127 RYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 186
           RY +RPYGVGLL+AGYDD GPHI+QTCPS+NY+D +AM+IG+RSQSARTYLE+ +++F E
Sbjct: 122 RYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFME 181

Query: 187 ASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEER 246
            +L+E+VKHGLRALR+TLP + +LTTKNVSIG+VG++ +F   D+ +   +L  +E   +
Sbjct: 182 CNLDELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLDGLEERPQ 241

Query: 247 R 247
           R
Sbjct: 242 R 242

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. Mediates the lipopolysaccharide-induced signal macrophage proteasome. Might be involved in the anti-inflammatory response of macrophages during the interaction with C.albicans heat-inactivated cells.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 4EC: .EC: 2EC: 5EC: .EC: 1

>sp|Q3T0X5|PSA1_BOVIN Proteasome subunit alpha type-1 OS=Bos taurus GN=PSMA1 PE=1 SV=1

 Score =  351 bits (900), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 158/241 (65%), Positives = 204/241 (84%)

Query: 7   FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK 66
           FRNQYD+DVTVWSPQGR+HQ+EYAMEAVKQGSATVGLK+KTHAV++ALKRA SELAAHQK
Sbjct: 2   FRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQK 61

Query: 67  KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
           KI+ +D+H+G+S AGLTADAR+L  FMR ECL+ ++     LPV RL+S++G+K Q+ TQ
Sbjct: 62  KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQ 121

Query: 127 RYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 186
           RY +RPYGVGLL+AGYDD GPHI+QTCPS+NY+D +AM+IG+RSQSARTYLE+ +++F E
Sbjct: 122 RYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFME 181

Query: 187 ASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEER 246
            +L E+VKHGLRALR+TLP + +LTTKNVSIG+VG++ +F   D+ +   +L  +E   +
Sbjct: 182 CNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERPQ 241

Query: 247 R 247
           R
Sbjct: 242 R 242

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. Mediates the lipopolysaccharide-induced signal macrophage proteasome. Might be involved in the anti-inflammatory response of macrophages during the interaction with C.albicans heat-inactivated cells.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|P25786|PSA1_HUMAN Proteasome subunit alpha type-1 OS=Homo sapiens GN=PSMA1 PE=1 SV=1

 Score =  351 bits (900), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 158/241 (65%), Positives = 204/241 (84%)

Query: 7   FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK 66
           FRNQYD+DVTVWSPQGR+HQ+EYAMEAVKQGSATVGLK+KTHAV++ALKRA SELAAHQK
Sbjct: 2   FRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQK 61

Query: 67  KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
           KI+ +D+H+G+S AGLTADAR+L  FMR ECL+ ++     LPV RL+S++G+K Q+ TQ
Sbjct: 62  KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQ 121

Query: 127 RYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 186
           RY +RPYGVGLL+AGYDD GPHI+QTCPS+NY+D +AM+IG+RSQSARTYLE+ +++F E
Sbjct: 122 RYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFME 181

Query: 187 ASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEER 246
            +L E+VKHGLRALR+TLP + +LTTKNVSIG+VG++ +F   D+ +   +L  +E   +
Sbjct: 182 CNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERPQ 241

Query: 247 R 247
           R
Sbjct: 242 R 242

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. Mediates the lipopolysaccharide-induced signal transduction in the macrophage proteasome (By similarity). Might be involved in the anti-inflammatory response of macrophages during the interaction with C.albicans heat-inactivated cells.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|Q5REN2|PSA1_PONAB Proteasome subunit alpha type-1 OS=Pongo abelii GN=PSMA1 PE=2 SV=1

 Score =  350 bits (898), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 158/241 (65%), Positives = 204/241 (84%)

Query: 7   FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK 66
           FRNQYD+DVTVWSPQGR+HQ+EYAMEAVKQGSATVGLK+KTHAV++ALKRA SELAAHQK
Sbjct: 2   FRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQK 61

Query: 67  KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
           KI+ +D+H+G+S AGLTADAR+L  FMR ECL+ ++     LPV RL+S++G+K Q+ TQ
Sbjct: 62  KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQ 121

Query: 127 RYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 186
           RY +RPYGVGLL+AGYDD GPHI+QTCPS+NY+D +AM+IG+RSQSARTYLE+ +++F E
Sbjct: 122 RYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFME 181

Query: 187 ASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEER 246
            +L E+VKHGLRALR+TLP + +LTTKNVSIG+VG++ +F   D+ +   +L  +E   +
Sbjct: 182 CNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIHDDDDVSPFLEGLEERPQ 241

Query: 247 R 247
           R
Sbjct: 242 R 242

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. Mediates the lipopolysaccharide-induced signal macrophage proteasome. Might be involved in the anti-inflammatory response of macrophages during the interaction with C.albicans heat-inactivated cells.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|P18420|PSA1_RAT Proteasome subunit alpha type-1 OS=Rattus norvegicus GN=Psma1 PE=1 SV=2

 Score =  350 bits (897), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 156/241 (64%), Positives = 205/241 (85%)

Query: 7   FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK 66
           FRNQYD+DVTVWSPQGR+HQ+EYAMEAVKQGSATVGLK+KTHAV++ALKRA SELAAHQK
Sbjct: 2   FRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQK 61

Query: 67  KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
           KI+ +D+H+G+S AGLTADAR+L  FMR ECL+ ++     LPV RL+S++G+K Q+ TQ
Sbjct: 62  KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQ 121

Query: 127 RYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 186
           RY +RPYGVGLL+AGYDD GPH++QTCPS+NY+D +AM+IG+RSQSARTYLE+ +++F +
Sbjct: 122 RYGRRPYGVGLLIAGYDDMGPHVFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMQ 181

Query: 187 ASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEER 246
            +L+E+VKHGLRALR+TLP + +LTTKNVSIG+VG++ +F   D+ +   +L  +E   +
Sbjct: 182 CNLDELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLDGLEERPQ 241

Query: 247 R 247
           R
Sbjct: 242 R 242

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. Mediates the lipopolysaccharide-induced signal macrophage proteasome. Might be involved in the anti-inflammatory response of macrophages during the interaction with C.albicans heat-inactivated cells.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|Q4R3H2|PSA1_MACFA Proteasome subunit alpha type-1 OS=Macaca fascicularis GN=PSMA1 PE=2 SV=1

 Score =  349 bits (895), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 157/241 (65%), Positives = 204/241 (84%)

Query: 7   FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK 66
           FRNQYD+DVTVWSPQGR+HQ+EYAMEAVKQGSATVGLK+KTHAV++ALKRA SELAAH+K
Sbjct: 2   FRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHRK 61

Query: 67  KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
           KI+ +D+H+G+S AGLTADAR+L  FMR ECL+ ++     LPV RL+S++G+K Q+ TQ
Sbjct: 62  KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQ 121

Query: 127 RYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 186
           RY +RPYGVGLL+AGYDD GPHI+QTCPS+NY+D +AM+IG+RSQSARTYLE+ +++F E
Sbjct: 122 RYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFME 181

Query: 187 ASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEER 246
            +L E+VKHGLRALR+TLP + +LTTKNVSIG+VG++ +F   D+ +   +L  +E   +
Sbjct: 182 CNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERPQ 241

Query: 247 R 247
           R
Sbjct: 242 R 242

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. Mediates the lipopolysaccharide-induced signal macrophage proteasome. Might be involved in the anti-inflammatory response of macrophages during the interaction with C.albicans heat-inactivated cells.

Macaca fascicularis (taxid: 9541)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|O42265|PSA1_CHICK Proteasome subunit alpha type-1 OS=Gallus gallus GN=PSMA1 PE=2 SV=2

 Score =  338 bits (866), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 152/235 (64%), Positives = 196/235 (83%)

Query: 13  SDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKIIVID 72
           SDVTVWSPQGR+HQ+EYAMEAVKQGSATVGLK+KTHAV++ALKRA SELAAHQKKI+ +D
Sbjct: 7   SDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILYVD 66

Query: 73  DHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRP 132
           +H+G+S AGLTADAR+L  FMR ECL+ ++     LPV RL+S++G+K Q+ TQRY +RP
Sbjct: 67  NHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRP 126

Query: 133 YGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEI 192
           YGVGLL+AGYDD GPHI+QTCPS+NY+D KAM+IG+RSQSAR YLE+ + +F + +L E+
Sbjct: 127 YGVGLLIAGYDDMGPHIFQTCPSANYFDCKAMSIGARSQSARNYLERHMTEFTDCNLNEL 186

Query: 193 VKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEERR 247
           VKHGLRALR+TLP + +LTTKNVSIG+VG++ +F   D+ +   +L  +E   +R
Sbjct: 187 VKHGLRALRETLPAEQDLTTKNVSIGIVGKDMEFTIYDDDDVAPFLEGLEERPQR 241

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|Q27562|PSA1_DICDI Proteasome subunit alpha type-1 OS=Dictyostelium discoideum GN=psmA1 PE=3 SV=1

 Score =  318 bits (815), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 145/240 (60%), Positives = 191/240 (79%), Gaps = 1/240 (0%)

Query: 7   FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK 66
           +RNQYDSD+T +SP GR+HQ+EYAMEAVKQG A V LK+K  AV+++LKR++SEL ++QK
Sbjct: 2   YRNQYDSDITTFSPSGRIHQIEYAMEAVKQGGAAVALKSKQFAVLVSLKRSSSELGSYQK 61

Query: 67  KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
           KI V+DDH+G++ +GLTADAR+L  +MR EC NY Y ++  + V RL++ V +K QV TQ
Sbjct: 62  KIFVVDDHVGIAISGLTADARMLCNYMRNECSNYNYVYESQMRVERLVTKVADKHQVHTQ 121

Query: 127 RYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 186
           RY +RPYGVGLLVAGYD  G HIYQTCPS N+YD K+++IGSRSQSA+TYLEK    F E
Sbjct: 122 RYGRRPYGVGLLVAGYDQLGAHIYQTCPSGNFYDYKSISIGSRSQSAKTYLEKHFESFEE 181

Query: 187 ASLEEIVKHGLRALRDTLPN-DSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEE 245
            +LE+++ HGLRALR+T+PN D  L +KNVSIG+VG+ Q FK ++E +   YL+L+E EE
Sbjct: 182 CTLEQLITHGLRALRETIPNTDDTLNSKNVSIGIVGEGQPFKIIEEADAQPYLNLLENEE 241

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|P12881|PSA1_DROME Proteasome subunit alpha type-1 OS=Drosophila melanogaster GN=Pros35 PE=1 SV=1

 Score =  310 bits (795), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 143/237 (60%), Positives = 190/237 (80%), Gaps = 3/237 (1%)

Query: 7   FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK 66
           FRNQYDSDVTVWSPQGRLHQVEYAMEAVK G+ATVGLKNK +AV++AL +  SEL+  Q+
Sbjct: 2   FRNQYDSDVTVWSPQGRLHQVEYAMEAVKLGTATVGLKNKDYAVLVALCKPTSELSDTQR 61

Query: 67  KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
           KII IDDH+G+S AGLTADAR+L+R++R ECLNYK+++  T PV RLI+ +GNKMQ  TQ
Sbjct: 62  KIIPIDDHLGISIAGLTADARVLSRYLRSECLNYKHSYDTTYPVSRLITNLGNKMQTTTQ 121

Query: 127 RYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 186
           RYD+RPYGVGLLVAGYD+ GPHIYQ  PS+ +++ KA +IGSRSQSARTYLEK L  F +
Sbjct: 122 RYDRRPYGVGLLVAGYDERGPHIYQVTPSATFFNCKANSIGSRSQSARTYLEKNLNKFLD 181

Query: 187 ASLEEIVKHGLRALRDTLPNDSE---LTTKNVSIGLVGQNQKFKTLDERETGHYLSL 240
           +S +EI++HG+RA+  TLP D +       ++++ +VG++Q F  L  +++  ++++
Sbjct: 182 SSKDEIIRHGIRAILGTLPTDEQGKDAGQYDITVAIVGKDQPFTILSNKDSAKHVAI 238

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|O14250|PSA6_SCHPO Probable proteasome subunit alpha type-6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC6G10.04c PE=3 SV=1

 Score =  278 bits (712), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 129/232 (55%), Positives = 173/232 (74%)

Query: 7   FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK 66
           FRNQYD D T WSPQGRLHQVEYA+EA+KQGSATVGL +KTHAV++ALKR A EL+++QK
Sbjct: 2   FRNQYDGDATTWSPQGRLHQVEYALEAIKQGSATVGLVSKTHAVLVALKRNAEELSSYQK 61

Query: 67  KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
           K+I IDDH+G++ AGL  DAR+L+ +M+ E L+ K      +PV RL+S V  K Q+ TQ
Sbjct: 62  KLIRIDDHIGIAIAGLAPDARVLSNYMKQEALSSKTLFTRPIPVRRLMSKVAEKAQINTQ 121

Query: 127 RYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 186
            Y +RPYGVG LV GYD++GPH+ +  PS    +    ++GSRSQSARTY+E+ L  FP+
Sbjct: 122 EYGRRPYGVGFLVIGYDESGPHLLEFQPSGLVLEYLGTSMGSRSQSARTYIERNLDTFPD 181

Query: 187 ASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYL 238
           +S EE++   LRALRDTL  D ELT +NVSI ++G+++K+   D+ +T  +L
Sbjct: 182 SSREELILSALRALRDTLSKDQELTEENVSISVIGKDEKYTLYDQNDTKEWL 233

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
242003283	293	proteasome subunit alpha type, putative	0.988	0.846	0.766	1e-113
307180286	277	Proteasome subunit alpha type-1 [Campono	0.964	0.873	0.776	1e-110
91077950	277	PREDICTED: similar to proteasome subunit	0.972	0.880	0.762	1e-108
156545571	285	PREDICTED: proteasome subunit alpha type	0.964	0.849	0.747	1e-107
332023931	276	Proteasome subunit alpha type-1 [Acromyr	0.964	0.876	0.760	1e-107
332372686	281	unknown [Dendroctonus ponderosae]	0.972	0.868	0.754	1e-107
193674111	279	PREDICTED: proteasome subunit alpha type	0.964	0.867	0.747	1e-105
239799225	279	ACYPI005674 [Acyrthosiphon pisum]	0.964	0.867	0.747	1e-105
389610119	274	proteasome 35kD subunit [Papilio xuthus]	0.976	0.894	0.734	1e-105
346470357	277	hypothetical protein [Amblyomma maculatu	0.960	0.870	0.730	1e-104

>gi|242003283|ref|XP_002422679.1| proteasome subunit alpha type, putative [Pediculus humanus corporis] gi|212505501|gb|EEB09941.1| proteasome subunit alpha type, putative [Pediculus humanus corporis]

 Score =  412 bits (1058), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 190/248 (76%), Positives = 218/248 (87%)

Query: 2   NVYWKFRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASEL 61
           NV   FRNQYDSDVTVWSPQGRLHQVEYAMEAVK GSATVGLKNKTHAV+IALKRA+SEL
Sbjct: 10  NVVKTFRNQYDSDVTVWSPQGRLHQVEYAMEAVKLGSATVGLKNKTHAVLIALKRASSEL 69

Query: 62  AAHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKM 121
           +AHQKKII ID H+G+S +GLTADARIL+R+MR ECLN+KY H + LPV RLI+ +GNKM
Sbjct: 70  SAHQKKIIPIDSHIGISISGLTADARILSRYMRTECLNHKYVHDEELPVSRLITNIGNKM 129

Query: 122 QVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRL 181
           QVCTQRYDKRPYGVGLL+AG+DD GPHIYQTCPS+NY+D KAMAIGSRSQSARTYLEK L
Sbjct: 130 QVCTQRYDKRPYGVGLLIAGFDDQGPHIYQTCPSANYFDCKAMAIGSRSQSARTYLEKHL 189

Query: 182 ADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLI 241
            +F     +E++KHGLRALRDTLPN+ EL +KNVSIG+VG++ KF   DE+ TGHYLS++
Sbjct: 190 EEFASCGTDELIKHGLRALRDTLPNEVELNSKNVSIGVVGKDTKFDVFDEQLTGHYLSMV 249

Query: 242 EGEERRGG 249
           EGEERR G
Sbjct: 250 EGEERRAG 257

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307180286|gb|EFN68319.1| Proteasome subunit alpha type-1 [Camponotus floridanus]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 188/242 (77%), Positives = 214/242 (88%)

Query: 7   FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK 66
           FRNQYDSDVTVWSPQGRLHQVEYAMEAVK GSATVGLKNKTHAV+IALKRA+SEL+AHQK
Sbjct: 2   FRNQYDSDVTVWSPQGRLHQVEYAMEAVKLGSATVGLKNKTHAVLIALKRASSELSAHQK 61

Query: 67  KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
           KII ID HMG+S +GLTADARIL+R+MR ECLNYKYAH DTLPV RLI+ +GNKMQ CTQ
Sbjct: 62  KIIPIDKHMGISISGLTADARILSRYMRTECLNYKYAHDDTLPVSRLITSLGNKMQTCTQ 121

Query: 127 RYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 186
           RYD+RPYGVGLLV GYDD GPHIYQTCPS+N++D KAMAIGSRSQSARTYLEK L++F  
Sbjct: 122 RYDRRPYGVGLLVGGYDDQGPHIYQTCPSANFFDCKAMAIGSRSQSARTYLEKHLSEFLS 181

Query: 187 ASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEER 246
             L+E+VKHGLRALRDTLPN+ +L+ KNVSIG+VG++  F  LDE  T  YLS IEG+++
Sbjct: 182 CDLDELVKHGLRALRDTLPNEVDLSVKNVSIGIVGKDYNFTILDEATTATYLSQIEGDDK 241

Query: 247 RG 248
           RG
Sbjct: 242 RG 243

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91077950|ref|XP_966973.1| PREDICTED: similar to proteasome subunit alpha type [Tribolium castaneum] gi|270001429|gb|EEZ97876.1| hypothetical protein TcasGA2_TC000258 [Tribolium castaneum]

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 186/244 (76%), Positives = 215/244 (88%)

Query: 7   FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK 66
           FRNQYDSDVTVWSPQGRLHQVEYAMEAV  GSATVGLK+KTHAV+IALKRA+SEL+A+QK
Sbjct: 2   FRNQYDSDVTVWSPQGRLHQVEYAMEAVNLGSATVGLKSKTHAVLIALKRASSELSAYQK 61

Query: 67  KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
           KII IDDH+G++ +GLTADARIL+R+MR ECLNYKY+H   LP+ RLIS +GNKMQ+CTQ
Sbjct: 62  KIINIDDHIGITISGLTADARILSRYMRTECLNYKYSHDTHLPLNRLISQLGNKMQLCTQ 121

Query: 127 RYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 186
           RYD+RPYGVGLLVAGYDD G HIYQTCPS+NYYD KAM+IG+RSQSARTYLEK L +   
Sbjct: 122 RYDRRPYGVGLLVAGYDDQGAHIYQTCPSANYYDCKAMSIGARSQSARTYLEKHLEELSS 181

Query: 187 ASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEER 246
            SLEE++KHGLRALRDTLP + +LT KNVSIG VG+ Q FK L + ETG YL++I+GEER
Sbjct: 182 CSLEELIKHGLRALRDTLPPEVDLTIKNVSIGYVGKGQSFKILVDDETGPYLAMIQGEER 241

Query: 247 RGGG 250
           RGGG
Sbjct: 242 RGGG 245

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156545571|ref|XP_001607375.1| PREDICTED: proteasome subunit alpha type-1-like [Nasonia vitripennis]

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 181/242 (74%), Positives = 215/242 (88%)

Query: 7   FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK 66
           FRNQYDSDVTVWSPQGRLHQVEYAMEAVK GSATVGLKNKTHAVI+ALKRA SEL++HQK
Sbjct: 2   FRNQYDSDVTVWSPQGRLHQVEYAMEAVKLGSATVGLKNKTHAVIVALKRATSELSSHQK 61

Query: 67  KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
           KI  ID H+G++ +GLTADAR+L+R+MR ECLNYKY+H +TLPV RLI+ +GNKMQ CTQ
Sbjct: 62  KIFPIDKHVGIAMSGLTADARMLSRYMRTECLNYKYSHDNTLPVSRLITTLGNKMQTCTQ 121

Query: 127 RYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 186
           RYD+RPYGVGLLVAGYDD GPHIYQTCPS+NY+D KAMAIG+RSQSARTYLEK L++F  
Sbjct: 122 RYDRRPYGVGLLVAGYDDQGPHIYQTCPSANYFDCKAMAIGARSQSARTYLEKHLSEFLG 181

Query: 187 ASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEER 246
           + L+E++KHGLRALRDTLPN+++L+ KNVSIG+VG+  +F  LDE  T  YLS IEG+++
Sbjct: 182 SDLDELIKHGLRALRDTLPNEADLSIKNVSIGVVGRGTEFSILDETATQGYLSQIEGDDK 241

Query: 247 RG 248
           RG
Sbjct: 242 RG 243

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023931|gb|EGI64149.1| Proteasome subunit alpha type-1 [Acromyrmex echinatior]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 184/242 (76%), Positives = 212/242 (87%)

Query: 7   FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK 66
           FRNQYDSDVTVWSPQGRLHQVEYAMEAVK GSATVGLK+KTHAV+IALKRA+SEL+AHQK
Sbjct: 1   FRNQYDSDVTVWSPQGRLHQVEYAMEAVKLGSATVGLKSKTHAVLIALKRASSELSAHQK 60

Query: 67  KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
           KII ID HMG+S +GLTADARIL+R+MR ECLNYKYAH   LPV RLI+ +GNKMQ CTQ
Sbjct: 61  KIIPIDKHMGISISGLTADARILSRYMRTECLNYKYAHDHALPVSRLITSLGNKMQTCTQ 120

Query: 127 RYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 186
           RYD+RPYGVGLLVAGYDD GPHIYQTCPS+NY+D KAMAIG+RSQSARTYLEK L +F  
Sbjct: 121 RYDRRPYGVGLLVAGYDDKGPHIYQTCPSANYFDCKAMAIGARSQSARTYLEKHLNEFLS 180

Query: 187 ASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEER 246
             L+E+VKHGLRALRDTLPN+ +L+ KNVSIG+VG++  F  L+E  T  +LS IEG+++
Sbjct: 181 CDLDELVKHGLRALRDTLPNEVDLSVKNVSIGIVGKDYDFAILNETTTASFLSQIEGDDK 240

Query: 247 RG 248
           RG
Sbjct: 241 RG 242

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332372686|gb|AEE61485.1| unknown [Dendroctonus ponderosae]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 184/244 (75%), Positives = 212/244 (86%)

Query: 7   FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK 66
           FRNQYDSDVTVWSPQGRLHQVEYAMEAV  GSATVGLK+ +HAV+IALKRA+SEL+A+QK
Sbjct: 2   FRNQYDSDVTVWSPQGRLHQVEYAMEAVNLGSATVGLKSNSHAVLIALKRASSELSAYQK 61

Query: 67  KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
           KII IDDH+G++ +GLTADARIL R+MR ECLN+KY H   LP+ RLIS +GNKMQ+CTQ
Sbjct: 62  KIINIDDHIGITISGLTADARILTRYMRAECLNHKYTHDTYLPLNRLISTLGNKMQICTQ 121

Query: 127 RYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 186
           RYD+RPYGVGLLVAG+D+ G HIYQTCPS+NYYD KAM+IG+RSQSARTYLEK L     
Sbjct: 122 RYDRRPYGVGLLVAGFDEKGSHIYQTCPSANYYDCKAMSIGARSQSARTYLEKHLDQLVN 181

Query: 187 ASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEER 246
            SL+E+VKHGLRALRDTLP + +L+TKNVSIG VG+ Q+FK LDE ET  YL LIEGEER
Sbjct: 182 ISLDELVKHGLRALRDTLPPEVDLSTKNVSIGFVGKEQQFKILDEEETAPYLKLIEGEER 241

Query: 247 RGGG 250
           RGGG
Sbjct: 242 RGGG 245

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193674111|ref|XP_001946453.1| PREDICTED: proteasome subunit alpha type-1-like [Acyrthosiphon pisum]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 181/242 (74%), Positives = 209/242 (86%)

Query: 7   FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK 66
           FRNQYDSDVTVWSPQGRLHQVEYAMEAVK GSA V LKNKTHA I+ALKRA +EL+A+QK
Sbjct: 2   FRNQYDSDVTVWSPQGRLHQVEYAMEAVKLGSAVVALKNKTHAAIVALKRAPNELSAYQK 61

Query: 67  KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
           KII++DDH+G SF+GL ADARIL+++MR EC ++K+AH D LPV RL++ V N+MQ+CTQ
Sbjct: 62  KIILVDDHLGFSFSGLLADARILSKYMRSECSSHKFAHGDDLPVNRLMTKVSNRMQLCTQ 121

Query: 127 RYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 186
           RYDKRPYGVGLLVAGYDD GPHIYQTCPS+NY + KAMAIGSRSQSARTYLE+ L  F E
Sbjct: 122 RYDKRPYGVGLLVAGYDDNGPHIYQTCPSANYTNCKAMAIGSRSQSARTYLERNLEAFKE 181

Query: 187 ASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEER 246
           ASLEE++KHG+RALRDTLPND  LT+KNVSI +VG+NQ F+  DE  T   LSLIEGEER
Sbjct: 182 ASLEELLKHGMRALRDTLPNDVNLTSKNVSIAVVGKNQLFEIYDEETTQSKLSLIEGEER 241

Query: 247 RG 248
           R 
Sbjct: 242 RA 243

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239799225|dbj|BAH70545.1| ACYPI005674 [Acyrthosiphon pisum]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 181/242 (74%), Positives = 209/242 (86%)

Query: 7   FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK 66
           FRNQYDSDVTVWSPQGRLHQVEYAMEAVK GSA V LKNKTHA I+ALKRA +EL+A+QK
Sbjct: 2   FRNQYDSDVTVWSPQGRLHQVEYAMEAVKLGSAVVALKNKTHAAIVALKRAPNELSAYQK 61

Query: 67  KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
           KII++DDH+G SF+GL ADARIL+++MR EC ++K+AH D LPV RL++ V N+MQ+CTQ
Sbjct: 62  KIILVDDHLGFSFSGLLADARILSKYMRSECSSHKFAHGDDLPVNRLMTKVSNRMQLCTQ 121

Query: 127 RYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 186
           RYDKRPYGVGLLVAGYDD GPHIYQTCPS+NY + KAMAIGSRSQSARTYLE+ L  F E
Sbjct: 122 RYDKRPYGVGLLVAGYDDNGPHIYQTCPSANYTNCKAMAIGSRSQSARTYLERNLEAFKE 181

Query: 187 ASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEER 246
           ASLEE++KHG+RALRDTLPND  LT+KNVSI +VG+NQ F+  DE  T   LSLIEGEER
Sbjct: 182 ASLEELLKHGMRALRDTLPNDVNLTSKNVSIAVVGKNQLFEIYDEETTQSKLSLIEGEER 241

Query: 247 RG 248
           R 
Sbjct: 242 RA 243

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389610119|dbj|BAM18671.1| proteasome 35kD subunit [Papilio xuthus]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 180/245 (73%), Positives = 209/245 (85%)

Query: 7   FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK 66
           FRNQYDSDVTVWSPQGRLHQVEYAMEAVK GSATVGLK+K  AV+IALKRA SEL+A+QK
Sbjct: 2   FRNQYDSDVTVWSPQGRLHQVEYAMEAVKLGSATVGLKSKQFAVLIALKRAVSELSAYQK 61

Query: 67  KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
           KII IDDH+G+S +GLTADAR+L+RFMR ECLNY+Y+H   +PV RLI++VGNKMQ+CTQ
Sbjct: 62  KIIPIDDHIGISISGLTADARMLSRFMRTECLNYRYSHDAQMPVGRLIALVGNKMQICTQ 121

Query: 127 RYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 186
           RYDKRP GVGLLVAGYDD GPHIYQTCPS+N++D +AMAIG+RSQSARTYLEK L  F +
Sbjct: 122 RYDKRPLGVGLLVAGYDDQGPHIYQTCPSANFFDCRAMAIGARSQSARTYLEKHLNTFMD 181

Query: 187 ASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEER 246
             L+++V HGLRALRDTLPN+ EL TKNVSI +VG     +  DE E   +LSL+EGEER
Sbjct: 182 CDLQQLVAHGLRALRDTLPNEVELNTKNVSIAIVGPKTPLRVSDETELVRFLSLVEGEER 241

Query: 247 RGGGG 251
           RGG G
Sbjct: 242 RGGSG 246

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346470357|gb|AEO35023.1| hypothetical protein [Amblyomma maculatum]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 176/241 (73%), Positives = 208/241 (86%)

Query: 7   FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK 66
           +RNQYD+DVTVWSPQGRLHQVEYAMEAVKQGSAT+GLK+ THAV++ALKRA+SEL+AHQK
Sbjct: 2   YRNQYDNDVTVWSPQGRLHQVEYAMEAVKQGSATIGLKSNTHAVLLALKRASSELSAHQK 61

Query: 67  KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
           KII ID+H G+S AGLTADAR+L++FMR ECLN +YAH   LP+ RL++++GNKMQVCTQ
Sbjct: 62  KIIPIDNHCGVSIAGLTADARLLSKFMRTECLNNRYAHDTPLPISRLVTLLGNKMQVCTQ 121

Query: 127 RYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 186
           RYD+RPYGVGLLVAGYDD G HIYQTCPS+N++D KAMAIG+RSQSARTYLEK L +F  
Sbjct: 122 RYDRRPYGVGLLVAGYDDMGAHIYQTCPSANFFDCKAMAIGARSQSARTYLEKHLDEFKS 181

Query: 187 ASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEER 246
             LEE+VKHGLRALRD LPN+ EL+TKNVSI +VG+NQ F   D+     YL+ IEGEE 
Sbjct: 182 CDLEELVKHGLRALRDCLPNEVELSTKNVSIAIVGKNQDFTIYDDDRVAPYLASIEGEED 241

Query: 247 R 247
           R
Sbjct: 242 R 242

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
UNIPROTKB|F1NFI8	261	PSMA1 "Proteasome subunit alph	0.924	0.888	0.672	7.7e-87
MGI|MGI:1347005	263	Psma1 "proteasome (prosome, ma	0.924	0.882	0.672	1.3e-86
UNIPROTKB|Q3T0X5	263	PSMA1 "Proteasome subunit alph	0.924	0.882	0.672	2e-86
UNIPROTKB|P25786	263	PSMA1 "Proteasome subunit alph	0.924	0.882	0.672	2e-86
UNIPROTKB|F2Z5L7	263	LOC100516779 "Proteasome subun	0.924	0.882	0.672	2e-86
UNIPROTKB|Q5REN2	263	PSMA1 "Proteasome subunit alph	0.924	0.882	0.672	3.3e-86
RGD|61841	263	Psma1 "proteasome (prosome, ma	0.924	0.882	0.663	3.3e-86
UNIPROTKB|Q4R3H2	263	PSMA1 "Proteasome subunit alph	0.924	0.882	0.668	5.4e-86
ZFIN|ZDB-GENE-040801-15	262	psma1 "proteasome (prosome, ma	0.924	0.885	0.655	7.2e-84
UNIPROTKB|J9P9G4	263	PSMA1 "Proteasome subunit alph	0.924	0.882	0.655	3.1e-83

UNIPROTKB|F1NFI8 PSMA1 "Proteasome subunit alpha type" [Gallus gallus (taxid:9031)]

 Score = 868 (310.6 bits), Expect = 7.7e-87, P = 7.7e-87
 Identities = 156/232 (67%), Positives = 199/232 (85%)

Query:     7 FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK 66
             FRNQYD+DVTVWSPQGR+HQ+EYAMEAVKQGSATVGLK+KTHAV++ALKRA SELAAHQK
Sbjct:     2 FRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQK 61

Query:    67 KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
             KI+ +D+H+G+S AGLTADAR+L  FMR ECL+ ++     LPV RL+S++G+K Q+ TQ
Sbjct:    62 KILYVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQ 121

Query:   127 RYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 186
             RY +RPYGVGLL+AGYDD GPHI+QTCPS+NY+D KAM+IG+RSQSARTYLE+ + +F +
Sbjct:   122 RYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCKAMSIGARSQSARTYLERHMTEFTD 181

Query:   187 ASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYL 238
              +L E+VKHGLRALR+TLP + +LTTKNVSIG+VG++ +F   D+ +   +L
Sbjct:   182 CNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDMEFTIYDDDDVAPFL 233

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0019773 "proteasome core complex, alpha-subunit complex" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0001530 "lipopolysaccharide binding" evidence=IEA

GO:0002862 "negative regulation of inflammatory response to antigenic stimulus" evidence=IEA

MGI|MGI:1347005 Psma1 "proteasome (prosome, macropain) subunit, alpha type 1" [Mus musculus (taxid:10090)]

 Score = 866 (309.9 bits), Expect = 1.3e-86, P = 1.3e-86
 Identities = 156/232 (67%), Positives = 201/232 (86%)

Query:     7 FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK 66
             FRNQYD+DVTVWSPQGR+HQ+EYAMEAVKQGSATVGLK+KTHAV++ALKRA SELAAHQK
Sbjct:     2 FRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQK 61

Query:    67 KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
             KI+ +D+H+G+S AGLTADAR+L  FMR ECL+ ++     LPV RL+S++G+K Q+ TQ
Sbjct:    62 KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQ 121

Query:   127 RYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 186
             RY +RPYGVGLL+AGYDD GPHI+QTCPS+NY+D +AM+IG+RSQSARTYLE+ +++F E
Sbjct:   122 RYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFME 181

Query:   187 ASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYL 238
              +L+E+VKHGLRALR+TLP + +LTTKNVSIG+VG++ +F   D+ +   +L
Sbjct:   182 CNLDELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFL 233

GO:0000502 "proteasome complex" evidence=IEA

GO:0001530 "lipopolysaccharide binding" evidence=IDA

GO:0002862 "negative regulation of inflammatory response to antigenic stimulus" evidence=IMP;TAS

GO:0004175 "endopeptidase activity" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IDA

GO:0006508 "proteolysis" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0019773 "proteasome core complex, alpha-subunit complex" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

UNIPROTKB|Q3T0X5 PSMA1 "Proteasome subunit alpha type-1" [Bos taurus (taxid:9913)]

 Score = 864 (309.2 bits), Expect = 2.0e-86, P = 2.0e-86
 Identities = 156/232 (67%), Positives = 200/232 (86%)

Query:     7 FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK 66
             FRNQYD+DVTVWSPQGR+HQ+EYAMEAVKQGSATVGLK+KTHAV++ALKRA SELAAHQK
Sbjct:     2 FRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQK 61

Query:    67 KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
             KI+ +D+H+G+S AGLTADAR+L  FMR ECL+ ++     LPV RL+S++G+K Q+ TQ
Sbjct:    62 KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQ 121

Query:   127 RYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 186
             RY +RPYGVGLL+AGYDD GPHI+QTCPS+NY+D +AM+IG+RSQSARTYLE+ +++F E
Sbjct:   122 RYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFME 181

Query:   187 ASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYL 238
              +L E+VKHGLRALR+TLP + +LTTKNVSIG+VG++ +F   D+ +   +L
Sbjct:   182 CNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFL 233

GO:0005839 "proteasome core complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0002862 "negative regulation of inflammatory response to antigenic stimulus" evidence=IEA

GO:0001530 "lipopolysaccharide binding" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0019773 "proteasome core complex, alpha-subunit complex" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|P25786 PSMA1 "Proteasome subunit alpha type-1" [Homo sapiens (taxid:9606)]

 Score = 864 (309.2 bits), Expect = 2.0e-86, P = 2.0e-86
 Identities = 156/232 (67%), Positives = 200/232 (86%)

Query:     7 FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK 66
             FRNQYD+DVTVWSPQGR+HQ+EYAMEAVKQGSATVGLK+KTHAV++ALKRA SELAAHQK
Sbjct:     2 FRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQK 61

Query:    67 KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
             KI+ +D+H+G+S AGLTADAR+L  FMR ECL+ ++     LPV RL+S++G+K Q+ TQ
Sbjct:    62 KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQ 121

Query:   127 RYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 186
             RY +RPYGVGLL+AGYDD GPHI+QTCPS+NY+D +AM+IG+RSQSARTYLE+ +++F E
Sbjct:   122 RYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFME 181

Query:   187 ASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYL 238
              +L E+VKHGLRALR+TLP + +LTTKNVSIG+VG++ +F   D+ +   +L
Sbjct:   182 CNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFL 233

GO:0019773 "proteasome core complex, alpha-subunit complex" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005839 "proteasome core complex" evidence=ISS

GO:0003723 "RNA binding" evidence=TAS

GO:0000502 "proteasome complex" evidence=TAS

GO:0005844 "polysome" evidence=TAS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000209 "protein polyubiquitination" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0002479 "antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006977 "DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=TAS

GO:0042981 "regulation of apoptotic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

UNIPROTKB|F2Z5L7 LOC100516779 "Proteasome subunit alpha type" [Sus scrofa (taxid:9823)]

 Score = 864 (309.2 bits), Expect = 2.0e-86, P = 2.0e-86
 Identities = 156/232 (67%), Positives = 200/232 (86%)

Query:     7 FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK 66
             FRNQYD+DVTVWSPQGR+HQ+EYAMEAVKQGSATVGLK+KTHAV++ALKRA SELAAHQK
Sbjct:     2 FRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQK 61

Query:    67 KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
             KI+ +D+H+G+S AGLTADAR+L  FMR ECL+ ++     LPV RL+S++G+K Q+ TQ
Sbjct:    62 KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQ 121

Query:   127 RYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 186
             RY +RPYGVGLL+AGYDD GPHI+QTCPS+NY+D +AM+IG+RSQSARTYLE+ +++F E
Sbjct:   122 RYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFME 181

Query:   187 ASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYL 238
              +L E+VKHGLRALR+TLP + +LTTKNVSIG+VG++ +F   D+ +   +L
Sbjct:   182 CNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFL 233

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0019773 "proteasome core complex, alpha-subunit complex" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|Q5REN2 PSMA1 "Proteasome subunit alpha type-1" [Pongo abelii (taxid:9601)]

 Score = 862 (308.5 bits), Expect = 3.3e-86, P = 3.3e-86
 Identities = 156/232 (67%), Positives = 200/232 (86%)

Query:     7 FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK 66
             FRNQYD+DVTVWSPQGR+HQ+EYAMEAVKQGSATVGLK+KTHAV++ALKRA SELAAHQK
Sbjct:     2 FRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQK 61

Query:    67 KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
             KI+ +D+H+G+S AGLTADAR+L  FMR ECL+ ++     LPV RL+S++G+K Q+ TQ
Sbjct:    62 KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQ 121

Query:   127 RYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 186
             RY +RPYGVGLL+AGYDD GPHI+QTCPS+NY+D +AM+IG+RSQSARTYLE+ +++F E
Sbjct:   122 RYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFME 181

Query:   187 ASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYL 238
              +L E+VKHGLRALR+TLP + +LTTKNVSIG+VG++ +F   D+ +   +L
Sbjct:   182 CNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIHDDDDVSPFL 233

GO:0005839 "proteasome core complex" evidence=ISS

RGD|61841 Psma1 "proteasome (prosome, macropain) subunit, alpha type 1" [Rattus norvegicus (taxid:10116)]

 Score = 862 (308.5 bits), Expect = 3.3e-86, P = 3.3e-86
 Identities = 154/232 (66%), Positives = 201/232 (86%)

Query:     7 FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK 66
             FRNQYD+DVTVWSPQGR+HQ+EYAMEAVKQGSATVGLK+KTHAV++ALKRA SELAAHQK
Sbjct:     2 FRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQK 61

Query:    67 KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
             KI+ +D+H+G+S AGLTADAR+L  FMR ECL+ ++     LPV RL+S++G+K Q+ TQ
Sbjct:    62 KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQ 121

Query:   127 RYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 186
             RY +RPYGVGLL+AGYDD GPH++QTCPS+NY+D +AM+IG+RSQSARTYLE+ +++F +
Sbjct:   122 RYGRRPYGVGLLIAGYDDMGPHVFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMQ 181

Query:   187 ASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYL 238
              +L+E+VKHGLRALR+TLP + +LTTKNVSIG+VG++ +F   D+ +   +L
Sbjct:   182 CNLDELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFL 233

GO:0001530 "lipopolysaccharide binding" evidence=IEA;ISO

GO:0002862 "negative regulation of inflammatory response to antigenic stimulus" evidence=IEA;ISO

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=ISO

GO:0005839 "proteasome core complex" evidence=ISO;ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0019773 "proteasome core complex, alpha-subunit complex" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|Q4R3H2 PSMA1 "Proteasome subunit alpha type-1" [Macaca fascicularis (taxid:9541)]

 Score = 860 (307.8 bits), Expect = 5.4e-86, P = 5.4e-86
 Identities = 155/232 (66%), Positives = 200/232 (86%)

Query:     7 FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK 66
             FRNQYD+DVTVWSPQGR+HQ+EYAMEAVKQGSATVGLK+KTHAV++ALKRA SELAAH+K
Sbjct:     2 FRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHRK 61

Query:    67 KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
             KI+ +D+H+G+S AGLTADAR+L  FMR ECL+ ++     LPV RL+S++G+K Q+ TQ
Sbjct:    62 KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQ 121

Query:   127 RYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 186
             RY +RPYGVGLL+AGYDD GPHI+QTCPS+NY+D +AM+IG+RSQSARTYLE+ +++F E
Sbjct:   122 RYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFME 181

Query:   187 ASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYL 238
              +L E+VKHGLRALR+TLP + +LTTKNVSIG+VG++ +F   D+ +   +L
Sbjct:   182 CNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFL 233

GO:0005839 "proteasome core complex" evidence=ISS

ZFIN|ZDB-GENE-040801-15 psma1 "proteasome (prosome, macropain) subunit, alpha type, 1" [Danio rerio (taxid:7955)]

 Score = 840 (300.8 bits), Expect = 7.2e-84, P = 7.2e-84
 Identities = 152/232 (65%), Positives = 196/232 (84%)

Query:     7 FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK 66
             FRNQYD+DVTVWSPQGR+HQ+EYAMEAVKQGSATVGLK+ +HAV++ALKRA SELAAHQK
Sbjct:     2 FRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSHSHAVLVALKRAQSELAAHQK 61

Query:    67 KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
             KI+ +D+H+G+S AGLTADAR+L  FMR ECL+ ++     LPV RL+S++G+K Q+ TQ
Sbjct:    62 KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQ 121

Query:   127 RYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 186
             RY +RPYGVGLL+AGYDD GPHI+QTCPS+NY+D KAM+IG+RSQSARTYLE+ +  F +
Sbjct:   122 RYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCKAMSIGARSQSARTYLERHMEAFND 181

Query:   187 ASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYL 238
              +L  +V+HGLRALR+TLP + +LTTKNVSIG+VG++ +F   D+ +   +L
Sbjct:   182 CNLNALVQHGLRALRETLPAEQDLTTKNVSIGIVGKDMEFTIYDDDDVATFL 233

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0004175 "endopeptidase activity" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IEA

GO:0019773 "proteasome core complex, alpha-subunit complex" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000502 "proteasome complex" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

UNIPROTKB|J9P9G4 PSMA1 "Proteasome subunit alpha type" [Canis lupus familiaris (taxid:9615)]

 Score = 834 (298.6 bits), Expect = 3.1e-83, P = 3.1e-83
 Identities = 152/232 (65%), Positives = 195/232 (84%)

Query:     7 FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK 66
             FRNQYD+DVTVWSPQGR+HQ+EYAMEAVKQGSATVGLK+KTHAV++ALKRA SELAAHQK
Sbjct:     2 FRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQK 61

Query:    67 KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
             KI+ +D+H+G+S AGLTADAR+L  FMR ECL+ ++     LPV RL+S++G+K Q+  Q
Sbjct:    62 KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPIQ 121

Query:   127 RYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 186
             RY +RPYGVGLL+AGYDD GPHI+QTCPS+NY+D +AM+IG+RSQSARTYLE+ ++   E
Sbjct:   122 RYGRRPYGVGLLIAGYDDRGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSGLME 181

Query:   187 ASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYL 238
              +L E+VKHGL AL +TLP + +LTTKNVSIG+VG++ +F   D+ +   +L
Sbjct:   182 CNLNELVKHGLCALGETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFL 233

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0019773 "proteasome core complex, alpha-subunit complex" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
C3NHC6	PSA_SULIN	3, ., 4, ., 2, 5, ., 1	0.3593	0.9003	0.9377	yes	N/A
O44156	PSA1_CAEEL	3, ., 4, ., 2, 5, ., 1	0.5166	0.9561	0.9230	yes	N/A
O42265	PSA1_CHICK	3, ., 4, ., 2, 5, ., 1	0.6468	0.9362	0.9038	yes	N/A
Q3T0X5	PSA1_BOVIN	3, ., 4, ., 2, 5, ., 1	0.6556	0.9601	0.9163	yes	N/A
Q9UXC6	PSA_SULSO	3, ., 4, ., 2, 5, ., 1	0.3593	0.9003	0.9377	yes	N/A
P25156	PSA_THEAC	3, ., 4, ., 2, 5, ., 1	0.3593	0.8884	0.9570	yes	N/A
Q27562	PSA1_DICDI	3, ., 4, ., 2, 5, ., 1	0.6041	0.9521	0.9637	yes	N/A
P34066	PSA1A_ARATH	3, ., 4, ., 2, 5, ., 1	0.52	0.8924	0.8057	no	N/A
P40302	PSA6_YEAST	3, ., 4, ., 2, 5, ., 1	0.4700	0.9203	0.9871	yes	N/A
Q975G5	PSA_SULTO	3, ., 4, ., 2, 5, ., 1	0.3537	0.8247	0.8553	yes	N/A
P25786	PSA1_HUMAN	3, ., 4, ., 2, 5, ., 1	0.6556	0.9601	0.9163	yes	N/A
Q18K08	PSA_HALWD	3, ., 4, ., 2, 5, ., 1	0.3663	0.8964	0.9	yes	N/A
C3NEC6	PSA_SULIY	3, ., 4, ., 2, 5, ., 1	0.3593	0.9003	0.9377	yes	N/A
Q8U0L6	PSA_PYRFU	3, ., 4, ., 2, 5, ., 1	0.3706	0.8884	0.8576	yes	N/A
Q9R1P4	PSA1_MOUSE	3, ., 4, ., 2, 5, ., 1	0.6556	0.9601	0.9163	yes	N/A
P18420	PSA1_RAT	3, ., 4, ., 2, 5, ., 1	0.6473	0.9601	0.9163	yes	N/A
Q5REN2	PSA1_PONAB	3, ., 4, ., 2, 5, ., 1	0.6556	0.9601	0.9163	yes	N/A
P92188	PSA1_TRYCR	3, ., 4, ., 2, 5, ., 1	0.5021	0.9243	0.8754	N/A	N/A
P52428	PSA1_ORYSJ	3, ., 4, ., 2, 5, ., 1	0.5283	0.8884	0.8259	yes	N/A
C3MVG1	PSA_SULIM	3, ., 4, ., 2, 5, ., 1	0.3593	0.9003	0.9377	yes	N/A
Q4R3H2	PSA1_MACFA	3, ., 4, ., 2, 5, ., 1	0.6514	0.9601	0.9163	N/A	N/A
P12881	PSA1_DROME	3, ., 4, ., 2, 5, ., 1	0.6033	0.9322	0.8387	yes	N/A
C3MQ43	PSA_SULIL	3, ., 4, ., 2, 5, ., 1	0.3593	0.9003	0.9377	yes	N/A
O23712	PSA1B_ARATH	3, ., 4, ., 2, 5, ., 1	0.5	0.9362	0.8483	yes	N/A
A4YCU9	PSA_METS5	3, ., 4, ., 2, 5, ., 1	0.3605	0.9123	0.9541	yes	N/A
C3N5R0	PSA_SULIA	3, ., 4, ., 2, 5, ., 1	0.3593	0.9003	0.9377	yes	N/A
C4KHD9	PSA_SULIK	3, ., 4, ., 2, 5, ., 1	0.3593	0.9003	0.9377	yes	N/A
O96788	PSA1_TRYBR	3, ., 4, ., 2, 5, ., 1	0.5064	0.9243	0.8721	N/A	N/A
O14250	PSA6_SCHPO	3, ., 4, ., 2, 5, ., 1	0.5560	0.9243	0.8529	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.25.1	0.946
3rd Layer	3.4.25	0.963

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	251
cd03749	211	cd03749, proteasome_alpha_type_1, proteasome_alpha	1e-134
cd01911	209	cd01911, proteasome_alpha, proteasome alpha subuni	1e-95
COG0638	236	COG0638, PRE1, 20S proteasome, alpha and beta subu	2e-66
PRK03996	241	PRK03996, PRK03996, proteasome subunit alpha; Prov	7e-60
TIGR03633	224	TIGR03633, arc_protsome_A, proteasome endopeptidas	1e-57
pfam00227	188	pfam00227, Proteasome, Proteasome subunit	2e-56
cd03750	227	cd03750, proteasome_alpha_type_2, proteasome_alpha	1e-55
cd03756	211	cd03756, proteasome_alpha_archeal, proteasome_alph	2e-54
cd03755	207	cd03755, proteasome_alpha_type_7, proteasome_alpha	3e-50
cd01906	182	cd01906, proteasome_protease_HslV, proteasome_prot	1e-46
cd03753	213	cd03753, proteasome_alpha_type_5, proteasome_alpha	2e-44
cd03752	213	cd03752, proteasome_alpha_type_4, proteasome_alpha	1e-43
cd03751	212	cd03751, proteasome_alpha_type_3, proteasome_alpha	5e-41
PTZ00246	253	PTZ00246, PTZ00246, proteasome subunit alpha; Prov	3e-38
cd03754	215	cd03754, proteasome_alpha_type_6, proteasome_alpha	5e-37
cd01901	164	cd01901, Ntn_hydrolase, The Ntn hydrolases (N-term	1e-34
cd03764	188	cd03764, proteasome_beta_archeal, Archeal proteaso	6e-22
TIGR03634	185	TIGR03634, arc_protsome_B, proteasome endopeptidas	8e-19
cd01912	189	cd01912, proteasome_beta, proteasome beta subunit	7e-15
pfam10584	23	pfam10584, Proteasome_A_N, Proteasome subunit A N-	2e-10
smart00948	23	smart00948, Proteasome_A_N, Proteasome subunit A N	1e-09
cd03761	188	cd03761, proteasome_beta_type_5, proteasome beta t	3e-06
cd03763	189	cd03763, proteasome_beta_type_7, proteasome beta t	4e-04
PTZ00488	247	PTZ00488, PTZ00488, Proteasome subunit beta type-5	0.001
cd03759	195	cd03759, proteasome_beta_type_3, proteasome beta t	0.003

>gnl|CDD|239718 cd03749, proteasome_alpha_type_1, proteasome_alpha_type_1

 Score =  377 bits (970), Expect = e-134
 Identities = 142/211 (67%), Positives = 180/211 (85%)

Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKIIV 70
           YD+DVT WSPQGRL QVEYAMEAVKQGSATVGLK+KTHAV++ALKRA SEL+++QKKI  
Sbjct: 1   YDTDVTTWSPQGRLFQVEYAMEAVKQGSATVGLKSKTHAVLVALKRATSELSSYQKKIFK 60

Query: 71  IDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDK 130
           +DDH+G++ AGLTADAR+L+R+MR ECLNY++ +   +PV RL+S V  K Q+ TQRY +
Sbjct: 61  VDDHIGIAIAGLTADARVLSRYMRQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRYGR 120

Query: 131 RPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLE 190
           RPYGVGLL+AGYD++GPH++QTCPS NY++ KA +IG+RSQSARTYLE+   +F + SLE
Sbjct: 121 RPYGVGLLIAGYDESGPHLFQTCPSGNYFEYKATSIGARSQSARTYLERHFEEFEDCSLE 180

Query: 191 EIVKHGLRALRDTLPNDSELTTKNVSIGLVG 221
           E++KH LRALR+TLP + ELT KNVSI +VG
Sbjct: 181 ELIKHALRALRETLPGEQELTIKNVSIAIVG 211

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 211

>gnl|CDD|238892 cd01911, proteasome_alpha, proteasome alpha subunit

 Score =  278 bits (715), Expect = 1e-95
 Identities = 98/213 (46%), Positives = 135/213 (63%), Gaps = 7/213 (3%)

Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASEL--AAHQKKI 68
           YD  +T +SP+GRL QVEYA+EAVK GS  VG+K K   V+   K+  S+L   +  +KI
Sbjct: 1   YDRSITTFSPEGRLFQVEYALEAVKNGSTAVGIKGKDGVVLAVEKKVTSKLLDPSSVEKI 60

Query: 69  IVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY 128
             IDDH+G + AGLTADAR+L    R+E  NY+Y + + +PV  L+  + +  QV TQ  
Sbjct: 61  FKIDDHIGCAVAGLTADARVLVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYG 120

Query: 129 DKRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEA 187
             RP+GV LL+AGYD + GP +YQT PS  Y+  KA AIG  SQ A+T+LEKR       
Sbjct: 121 GVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAIGKGSQEAKTFLEKRYKKDL-- 178

Query: 188 SLEEIVKHGLRALRDTLPNDSELTTKNVSIGLV 220
           +LEE +K  L+AL++ L  + +   KN+ I +V
Sbjct: 179 TLEEAIKLALKALKEVL--EEDKKAKNIEIAVV 209

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each. Length = 209

>gnl|CDD|223711 COG0638, PRE1, 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]

 Score =  205 bits (523), Expect = 2e-66
 Identities = 97/229 (42%), Positives = 140/229 (61%), Gaps = 9/229 (3%)

Query: 9   NQYDSDVTVWSPQGRLHQVEYAMEAVKQGSAT-VGLKNKTHAVIIALKRAASELAA---H 64
             YD  +T++SP+GRL QVEYA+EAVK+G  T VG+K K   V+ A KRA S L     +
Sbjct: 1   AGYDRAITIFSPEGRLFQVEYALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSN 60

Query: 65  QKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVC 124
            +KI  IDDH+G++ AGL ADA++L R+ R E   Y+  + + + V  L  ++ N +Q  
Sbjct: 61  VEKIFKIDDHIGMAIAGLAADAQVLVRYARAEAQLYRLRYGEPISVEALAKLLSNILQEY 120

Query: 125 TQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADF 184
           TQ    RPYGV LLVAG DD GP +Y T PS +Y + KA AIGS SQ A  +LEK     
Sbjct: 121 TQSG--RPYGVSLLVAGVDDGGPRLYSTDPSGSYNEYKATAIGSGSQFAYGFLEKEYR-- 176

Query: 185 PEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERE 233
            + SLEE ++  ++ALR  +  D+  +   + + ++ +++ F+ LD  E
Sbjct: 177 EDLSLEEAIELAVKALRAAIERDAA-SGGGIEVAVITKDEGFRKLDGEE 224

Length = 236

>gnl|CDD|235192 PRK03996, PRK03996, proteasome subunit alpha; Provisional

 Score =  188 bits (481), Expect = 7e-60
 Identities = 91/236 (38%), Positives = 133/236 (56%), Gaps = 7/236 (2%)

Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASEL--AAHQKKI 68
           YD  +T++SP GRL+QVEYA EAVK+G+  VG+K K   V+   KR  S L   +  +KI
Sbjct: 10  YDRAITIFSPDGRLYQVEYAREAVKRGTTAVGVKTKDGVVLAVDKRITSPLIEPSSIEKI 69

Query: 69  IVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY 128
             IDDH+G + AGL ADAR+L    R+E    +  + + + V  L   + +  Q  TQ  
Sbjct: 70  FKIDDHIGAASAGLVADARVLIDRARVEAQINRLTYGEPIGVETLTKKICDHKQQYTQHG 129

Query: 129 DKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEAS 188
             RP+GV LL+AG DD GP +++T PS  Y + KA AIG+   +   +LEK   +  + S
Sbjct: 130 GVRPFGVALLIAGVDDGGPRLFETDPSGAYLEYKATAIGAGRDTVMEFLEKNYKE--DLS 187

Query: 189 LEEIVKHGLRALRDTLPNDSELTTKNVSIGLVG-QNQKFKTLDERETGHYLSLIEG 243
           LEE ++  L+AL     N+ +L  +NV I  +  + +KF+ L   E   YL  +  
Sbjct: 188 LEEAIELALKALAKA--NEGKLDPENVEIAYIDVETKKFRKLSVEEIEKYLEKLLK 241

Length = 241

>gnl|CDD|163366 TIGR03633, arc_protsome_A, proteasome endopeptidase complex, archaeal, alpha subunit

 Score =  182 bits (464), Expect = 1e-57
 Identities = 87/226 (38%), Positives = 132/226 (58%), Gaps = 7/226 (3%)

Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASEL--AAHQKKI 68
           YD  +TV+SP GRL+QVEYA EAVK+G+  VG+K K   V+   KR  S+L   +  +KI
Sbjct: 3   YDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKTKDGVVLAVDKRITSKLVEPSSIEKI 62

Query: 69  IVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY 128
             IDDH+G + +GL ADAR+L    R+E    +  + + + V  L   + +  Q  TQ  
Sbjct: 63  FKIDDHIGAATSGLVADARVLIDRARIEAQINRLTYGEPIDVETLAKKICDLKQQYTQHG 122

Query: 129 DKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEAS 188
             RP+GV LL+AG DD GP +++T PS    + KA AIG+  Q+   +LEK   +  + S
Sbjct: 123 GVRPFGVALLIAGVDDGGPRLFETDPSGALLEYKATAIGAGRQAVTEFLEKEYRE--DLS 180

Query: 189 LEEIVKHGLRALRDTLPNDSELTTKNVSIGLVG-QNQKFKTLDERE 233
           L+E ++  L+AL      + +LT +NV +  +  +++KF+ L   E
Sbjct: 181 LDEAIELALKALYSA--VEDKLTPENVEVAYITVEDKKFRKLSVEE 224

This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 224

>gnl|CDD|215805 pfam00227, Proteasome, Proteasome subunit

 Score =  178 bits (453), Expect = 2e-56
 Identities = 76/192 (39%), Positives = 113/192 (58%), Gaps = 9/192 (4%)

Query: 34  VKQGSATVGLKNKTHAVIIALKRA---ASELAAHQ-KKIIVIDDHMGLSFAGLTADARIL 89
           VK G+  VG+K K   V+ A KRA   +  L+    +KI  IDDH+G++FAGL ADA+ L
Sbjct: 1   VKTGTTIVGIKGKDGVVLAADKRATRGSKLLSKDTVEKIFKIDDHIGMAFAGLAADAQTL 60

Query: 90  ARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAG-PH 148
             + R E   Y+  +   + V  L   + +K+Q  TQ   +RPYGV LL+AGYD+ G PH
Sbjct: 61  VDYARAEAQLYRLRYGRPISV-ELAKRIADKLQAYTQYSGRRPYGVSLLIAGYDEDGGPH 119

Query: 149 IYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDS 208
           +Y   PS +  + KA AIGS SQ A  +LEK     P+ +LEE V+  ++AL++ +  D 
Sbjct: 120 LYSIDPSGSVIEYKATAIGSGSQYAYGFLEKLY--KPDMTLEEAVELAVKALKEAIERD- 176

Query: 209 ELTTKNVSIGLV 220
            L+  N+ + ++
Sbjct: 177 ALSGGNIEVAVI 188

The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria. The second is call beta-proteobacteria proteasome homologue (BPH). Length = 188

>gnl|CDD|239719 cd03750, proteasome_alpha_type_2, proteasome_alpha_type_2

 Score =  177 bits (451), Expect = 1e-55
 Identities = 78/231 (33%), Positives = 131/231 (56%), Gaps = 6/231 (2%)

Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKI 68
           Y   +T +SP G+L Q+EYA+ AV  G+ +VG+K     V+   K+  S L   +   K+
Sbjct: 1   YSFSLTTFSPSGKLVQIEYALAAVSSGAPSVGIKAANGVVLATEKKVPSPLIDESSVHKV 60

Query: 69  IVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY 128
             I  H+G+ ++G+  D R+L +  R     Y   + + +PV +L+  + + MQ  TQ  
Sbjct: 61  EQITPHIGMVYSGMGPDFRVLVKKARKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQSG 120

Query: 129 DKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEAS 188
             RP+GV LL+AG+D+ GP++YQ  PS +Y+  KA AIG    +A+T+LEKR  +  +  
Sbjct: 121 GVRPFGVSLLIAGWDEGGPYLYQVDPSGSYFTWKATAIGKNYSNAKTFLEKRYNE--DLE 178

Query: 189 LEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLS 239
           LE+ +   +  L++    + ++T KN+ IG+ G+ + F+ L   E   YL+
Sbjct: 179 LEDAIHTAILTLKEGF--EGQMTEKNIEIGICGETKGFRLLTPAEIKDYLA 227

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 227

>gnl|CDD|239725 cd03756, proteasome_alpha_archeal, proteasome_alpha_archeal

 Score =  174 bits (442), Expect = 2e-54
 Identities = 87/212 (41%), Positives = 125/212 (58%), Gaps = 6/212 (2%)

Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASEL--AAHQKKI 68
           YD  +TV+SP GRL+QVEYA EAVK+G+  +G+K K   V+   KR  S+L      +KI
Sbjct: 2   YDRAITVFSPDGRLYQVEYAREAVKRGTTALGIKCKEGVVLAVDKRITSKLVEPESIEKI 61

Query: 69  IVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY 128
             IDDH+G + +GL ADAR+L    R+E   ++  + + + V  L+  + +  Q  TQ  
Sbjct: 62  YKIDDHVGAATSGLVADARVLIDRARVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHG 121

Query: 129 DKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEAS 188
             RP+GV LL+AG DD GP +++T PS  Y + KA AIGS  Q+   +LEK   +  + S
Sbjct: 122 GVRPFGVALLIAGVDDGGPRLFETDPSGAYNEYKATAIGSGRQAVTEFLEKEYKE--DMS 179

Query: 189 LEEIVKHGLRALRDTLPNDSELTTKNVSIGLV 220
           LEE ++  L+AL   L  +   T +NV I  V
Sbjct: 180 LEEAIELALKALYAAL--EENETPENVEIAYV 209

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 211

>gnl|CDD|239724 cd03755, proteasome_alpha_type_7, proteasome_alpha_type_7

 Score =  163 bits (414), Expect = 3e-50
 Identities = 77/213 (36%), Positives = 126/213 (59%), Gaps = 9/213 (4%)

Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASEL--AAHQKKI 68
           YD  +TV+SP G L QVEYA EAV++G+  VG++ K   V+   K++ ++L      +KI
Sbjct: 1   YDRAITVFSPDGHLFQVEYAQEAVRKGTTAVGVRGKDCVVLGVEKKSVAKLQDPRTVRKI 60

Query: 69  IVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY 128
            ++DDH+ L+FAGLTADAR+L    R+EC +++   +D + V  +   +    Q  TQ  
Sbjct: 61  CMLDDHVCLAFAGLTADARVLINRARLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSG 120

Query: 129 DKRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEA 187
             RP+G+  L+ G+D D  P +YQT PS  Y   KA AIG  S++ R +LEK   +  E 
Sbjct: 121 GVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKANAIGRNSKTVREFLEKNYKE--EM 178

Query: 188 SLEEIVKHGLRALRDTLPNDSELTTKNVSIGLV 220
           + ++ +K  ++AL + +    +  +KN+ + ++
Sbjct: 179 TRDDTIKLAIKALLEVV----QSGSKNIELAVM 207

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 207

>gnl|CDD|238887 cd01906, proteasome_protease_HslV, proteasome_protease_HslV

 Score =  153 bits (388), Expect = 1e-46
 Identities = 72/187 (38%), Positives = 102/187 (54%), Gaps = 9/187 (4%)

Query: 38  SATVGLKNKTHAVIIALKRAASELAAH---QKKIIVIDDHMGLSFAGLTADARILARFMR 94
           +  VG+K K   V+ A KR  S L       +KI  IDDH+G +FAGL ADA+ L   +R
Sbjct: 1   TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLR 60

Query: 95  MECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA-GPHIYQTC 153
            E   Y+  + + +PV  L  ++ N +   TQ    RP GV LLVAG D+  GP +Y   
Sbjct: 61  KEAQLYRLRYGEPIPVEALAKLLANLLYEYTQSL--RPLGVSLLVAGVDEEGGPQLYSVD 118

Query: 154 PSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTK 213
           PS +Y + KA AIGS SQ A   LEK     P+ +LEE ++  L+AL+  L  D   +  
Sbjct: 119 PSGSYIEYKATAIGSGSQYALGILEKLY--KPDMTLEEAIELALKALKSALERDL-YSGG 175

Query: 214 NVSIGLV 220
           N+ + ++
Sbjct: 176 NIEVAVI 182

This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleophilic threonine that is exposed by post-translational processing of an inactive propeptide. Length = 182

>gnl|CDD|239722 cd03753, proteasome_alpha_type_5, proteasome_alpha_type_5

 Score =  148 bits (376), Expect = 2e-44
 Identities = 78/228 (34%), Positives = 122/228 (53%), Gaps = 33/228 (14%)

Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASEL--AAHQKKI 68
           YD  V  +SP+GRL QVEYA+EA+K GS  +G+K K   V+   KR  S L   +  +KI
Sbjct: 1   YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIKTKEGVVLAVEKRITSPLMEPSSVEKI 60

Query: 69  IVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ-- 126
           + IDDH+G + +GL ADAR L    R+E  N+++ + + + V           +  TQ  
Sbjct: 61  MEIDDHIGCAMSGLIADARTLIDHARVEAQNHRFTYNEPMTV-----------ESVTQAV 109

Query: 127 -----RYDK---------RPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQS 172
                ++ +         RP+GV LL+AG D+ GP ++ T PS  +    A AIGS S+ 
Sbjct: 110 SDLALQFGEGDDGKKAMSRPFGVALLIAGVDENGPQLFHTDPSGTFTRCDAKAIGSGSEG 169

Query: 173 ARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLV 220
           A++ L+++     + +LEE  K  L  L+  +  + +L + NV +  V
Sbjct: 170 AQSSLQEKYHK--DMTLEEAEKLALSILKQVM--EEKLNSTNVELATV 213

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 213

>gnl|CDD|239721 cd03752, proteasome_alpha_type_4, proteasome_alpha_type_4

 Score =  146 bits (370), Expect = 1e-43
 Identities = 78/206 (37%), Positives = 120/206 (58%), Gaps = 8/206 (3%)

Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK---K 67
           YDS  T++SP+GRL+QVEYAMEA+      +G+  K   V+ A K+  S+L        K
Sbjct: 3   YDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEK 62

Query: 68  IIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQR 127
           I  IDDH+  + AG+T+DA IL  + R+    Y Y++++ +PV +L+  + +  Q  TQ 
Sbjct: 63  IYKIDDHIACAVAGITSDANILINYARLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQY 122

Query: 128 YDKRPYGVGLLVAGYDDA-GPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 186
              RP+GV  L AG+D   G  +YQ+ PS NY   KA AIG+ +Q+A++ L++   D  +
Sbjct: 123 GGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWKATAIGNNNQAAQSLLKQDYKD--D 180

Query: 187 ASLEEIVKHGLRALRDTLPNDSELTT 212
            +LEE +   ++ L  T+  DS   T
Sbjct: 181 MTLEEALALAVKVLSKTM--DSTKLT 204

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 213

>gnl|CDD|239720 cd03751, proteasome_alpha_type_3, proteasome_alpha_type_3

 Score =  139 bits (353), Expect = 5e-41
 Identities = 68/186 (36%), Positives = 93/186 (50%), Gaps = 4/186 (2%)

Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASEL--AAHQKKI 68
           YD   + +SP GR+ QVEYA +AV+     +G++ K   V+   K   S+L      K+I
Sbjct: 4   YDLSASTFSPDGRVFQVEYANKAVENSGTAIGIRCKDGVVLAVEKLVTSKLYEPGSNKRI 63

Query: 69  IVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY 128
             +D H+G++ AGL AD R L    R E  NY+  +   +PV  L   V   M   T   
Sbjct: 64  FNVDRHIGIAVAGLLADGRHLVSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTLYS 123

Query: 129 DKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEAS 188
             RP+G  +L+ GYD  GP +Y   PS   Y     AIG   Q+A+T LEK    F E +
Sbjct: 124 SVRPFGCSVLLGGYDSDGPQLYMIEPSGVSYGYFGCAIGKGKQAAKTELEK--LKFSELT 181

Query: 189 LEEIVK 194
             E VK
Sbjct: 182 CREAVK 187

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 212

>gnl|CDD|173491 PTZ00246, PTZ00246, proteasome subunit alpha; Provisional

 Score =  133 bits (336), Expect = 3e-38
 Identities = 86/246 (34%), Positives = 128/246 (52%), Gaps = 16/246 (6%)

Query: 10  QYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASEL---AAHQK 66
           +YDS  T +SP+GRL+QVEYA+EA+   S TVG+  K   ++ A K  +S+L       +
Sbjct: 4   RYDSRTTTFSPEGRLYQVEYALEAINNASLTVGILCKEGVILGADKPISSKLLDPGKINE 63

Query: 67  KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
           KI  ID H+  + AGLTADA IL    R+    Y+Y + +  PV +L+  + +  Q  TQ
Sbjct: 64  KIYKIDSHIFCAVAGLTADANILINQCRLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQ 123

Query: 127 RYDKRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFP 185
               RP+GV  L AGYD + G  +Y T PS NY   KA AIG  +Q+A++ L++   +  
Sbjct: 124 FGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSGWKATAIGQNNQTAQSILKQEWKE-- 181

Query: 186 EASLEEIVKHGLRALRDTLPNDSELTTKN---VSIGLVGQNQKF----KTLDERETGHYL 238
           + +LE+ +    + L  ++  DS     +   V I L           K L E+E    L
Sbjct: 182 DLTLEQGLLLAAKVLTKSM--DSTSPKADKIEVGI-LSHGETDGEPIQKMLSEKEIAELL 238

Query: 239 SLIEGE 244
             +  E
Sbjct: 239 KKVTQE 244

Length = 253

>gnl|CDD|239723 cd03754, proteasome_alpha_type_6, proteasome_alpha_type_6

 Score =  129 bits (326), Expect = 5e-37
 Identities = 70/216 (32%), Positives = 112/216 (51%), Gaps = 8/216 (3%)

Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSAT-VGLKNKTHAVIIALKRAASEL--AAHQKK 67
           +D  +T++SP+GRL+QVEYA +AVK    T V ++ K  AV++  K+   +L   +    
Sbjct: 2   FDRHITIFSPEGRLYQVEYAFKAVKNAGLTSVAVRGKDCAVVVTQKKVPDKLIDPSTVTH 61

Query: 68  IIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQR 127
           +  I D +G    G+ AD+R   +  R E   +KY +   +PV  L   + +  QV TQ 
Sbjct: 62  LFRITDEIGCVMTGMIADSRSQVQRARYEAAEFKYKYGYEMPVDVLAKRIADINQVYTQH 121

Query: 128 YDKRPYGVGLLVAGYDDA-GPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 186
              RP GV +++ G D+  GP +Y+  P+  +   KA A G + Q A  +LEK+L   P+
Sbjct: 122 AYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYKATAAGVKEQEATNFLEKKLKKKPD 181

Query: 187 A--SLEEIVKHGLRALRDTLPNDSELTTKNVSIGLV 220
              S EE V+  +  L+  L  D       + +G+V
Sbjct: 182 LIESYEETVELAISCLQTVLSTD--FKATEIEVGVV 215

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 215

>gnl|CDD|238884 cd01901, Ntn_hydrolase, The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid

 Score =  121 bits (306), Expect = 1e-34
 Identities = 61/169 (36%), Positives = 89/169 (52%), Gaps = 9/169 (5%)

Query: 38  SATVGLKNKTHAVIIALKRAASELAAH---QKKIIVIDDHMGLSFAGLTADARILARFMR 94
           S +V +K K   V+ A KR +S L        KI   +D +    AGL ADA+ L R +R
Sbjct: 1   STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLR 60

Query: 95  MECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCP 154
                Y+  + + + V  L   +   +QV TQ    RP+GV L+VAG D+ G ++Y   P
Sbjct: 61  EALQLYRLRYGEPISVVALAKELAKLLQVYTQG---RPFGVNLIVAGVDEGGGNLYYIDP 117

Query: 155 SSNYY-DVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRD 202
           S     +  A+A GSRSQ A++ LEK     P+ +LEE V+  L+AL+ 
Sbjct: 118 SGPVIENPGAVATGSRSQRAKSLLEKLYK--PDMTLEEAVELALKALKS 164

N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either the nucleophilic hydroxyl in a Ser or Thr residue or the nucleophilic thiol in a Cys residue. The position of the N-terminal nucleophile in the active site and the mechanism of catalysis are conserved in this family, despite considerable variation in the protein sequences. Length = 164

>gnl|CDD|239733 cd03764, proteasome_beta_archeal, Archeal proteasome, beta subunit

 Score = 89.2 bits (222), Expect = 6e-22
 Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 9/172 (5%)

Query: 40  TVGLKNKTHAVIIALKRA-ASELAAHQ--KKIIVIDDHMGLSFAGLTADARILARFMRME 96
           TVG+  K   V+ A KRA      A +  KKI  IDD + ++ AG   DA+ L R ++ E
Sbjct: 3   TVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAE 62

Query: 97  CLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSS 156
              Y+      + +  L +++ N +          PY V LL+ G D+ GPH+Y   P  
Sbjct: 63  ARLYELRRGRPMSIKALATLLSNIL----NSSKYFPYIVQLLIGGVDEEGPHLYSLDPLG 118

Query: 157 NYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDS 208
           +  + K  A GS S  A   LE       + ++EE  K  +RA++  +  DS
Sbjct: 119 SIIEDKYTATGSGSPYAYGVLEDEYK--EDMTVEEAKKLAIRAIKSAIERDS 168

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 188

>gnl|CDD|234287 TIGR03634, arc_protsome_B, proteasome endopeptidase complex, archaeal, beta subunit

 Score = 80.7 bits (200), Expect = 8e-19
 Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 9/175 (5%)

Query: 37  GSATVGLKNKTHAVIIALKRAASE-LAAHQ--KKIIVIDDHMGLSFAGLTADARILARFM 93
           G+ TVG+K K   V+ A KRA+     A +  KK+  IDD++ ++ AG   DA+ L R +
Sbjct: 1   GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRIL 60

Query: 94  RMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTC 153
           + E   Y+      + V  L +++ N +   + R+   P+ V LLV G D+ GPH+Y   
Sbjct: 61  KAEAKLYELRRGRPMSVKALATLLSNILN--SNRF--FPFIVQLLVGGVDEEGPHLYSLD 116

Query: 154 PSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDS 208
           P+    +    A GS S  A   LE       + S+EE  K  +RA++  +  D 
Sbjct: 117 PAGGIIEDDYTATGSGSPVAYGVLEDEYR--EDMSVEEAKKLAVRAIKSAIERDV 169

This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 185

>gnl|CDD|238893 cd01912, proteasome_beta, proteasome beta subunit

 Score = 70.2 bits (173), Expect = 7e-15
 Identities = 51/168 (30%), Positives = 78/168 (46%), Gaps = 14/168 (8%)

Query: 40  TVGLKNKTHAVIIALKRA-ASELAAHQ--KKIIVIDDHMGLSFAGLTADARILARFMRME 96
            VG+K K   V+ A  RA A  L A +   KI  I D++ L  AG  AD + L R ++  
Sbjct: 3   IVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRN 62

Query: 97  CLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKR--PYGVGLLVAGYD-DAGPHIYQTC 153
              Y+  +   L V    +++ N +      Y  R  PY V L+V G D   GP +Y   
Sbjct: 63  LRLYELRNGRELSVKAAANLLSNIL------YSYRGFPYYVSLIVGGVDKGGGPFLYYVD 116

Query: 154 PSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALR 201
           P  +  +   +A GS S+ A   L++     P+ +LEE V+   +A+ 
Sbjct: 117 PLGSLIEAPFVATGSGSKYAYGILDRGYK--PDMTLEEAVELVKKAID 162

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 189

>gnl|CDD|204518 pfam10584, Proteasome_A_N, Proteasome subunit A N-terminal signature

 Score = 53.6 bits (130), Expect = 2e-10
 Identities = 15/23 (65%), Positives = 18/23 (78%)

Query: 11 YDSDVTVWSPQGRLHQVEYAMEA 33
          YD  +T +SP GRL QVEYAM+A
Sbjct: 1  YDRSLTTFSPDGRLFQVEYAMKA 23

This domain is conserved in the A subunits of the proteasome complex proteins. Length = 23

>gnl|CDD|198016 smart00948, Proteasome_A_N, Proteasome subunit A N-terminal signature Add an annotation

 Score = 51.7 bits (125), Expect = 1e-09
 Identities = 16/23 (69%), Positives = 18/23 (78%)

Query: 11 YDSDVTVWSPQGRLHQVEYAMEA 33
          YD  +T +SP GRL QVEYAMEA
Sbjct: 1  YDRSLTTFSPDGRLFQVEYAMEA 23

This domain is conserved in the A subunits of the proteasome complex proteins. Length = 23

>gnl|CDD|239730 cd03761, proteasome_beta_type_5, proteasome beta type-5 subunit

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 13/117 (11%)

Query: 40  TVGLKNKTHAVIIALKRAAS--ELAAHQ--KKIIVIDDHMGLSFAGLTADARILARFMRM 95
           T+    +   VI+A+   A+     A Q  KK+I I+ ++  + AG  AD +   R +  
Sbjct: 3   TLAFIFQ-GGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGR 61

Query: 96  ECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYG--VGLLVAGYDDAGPHIY 150
           EC  Y+  +K        IS+      +    Y  +  G  +G ++ G+D  GP +Y
Sbjct: 62  ECRLYELRNK------ERISVAAASKLLSNMLYQYKGMGLSMGTMICGWDKTGPGLY 112

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 188

>gnl|CDD|239732 cd03763, proteasome_beta_type_7, proteasome beta type-7 subunit

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 41/163 (25%), Positives = 66/163 (40%), Gaps = 22/163 (13%)

Query: 41  VGLKNKTHAVIIALKRA-ASELAA--HQKKIIVIDDHMGLSFAGLTADARILARFMR--M 95
           VG+  K   V+ A  RA    + A  + +KI  I  ++    AG  AD   +   +   +
Sbjct: 4   VGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNL 63

Query: 96  ECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ---RYDKRPY-GVGLLVAGYDDAGPHIYQ 151
           E        K           V   + +  Q   RY  + + G  L++ G D  GPH+Y 
Sbjct: 64  ELHRLNTGRK---------PRVVTALTMLKQHLFRY--QGHIGAALVLGGVDYTGPHLYS 112

Query: 152 TCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVK 194
             P  +   +  + +GS S +A + LE R    P+ + EE  K
Sbjct: 113 IYPHGSTDKLPFVTMGSGSLAAMSVLEDRY--KPDMTEEEAKK 153

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 189

>gnl|CDD|185666 PTZ00488, PTZ00488, Proteasome subunit beta type-5; Provisional

 Score = 39.2 bits (91), Expect = 0.001
 Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 13/123 (10%)

Query: 34  VKQGSATVGLKNKTHAVIIAL--KRAASELAAHQ--KKIIVIDDHMGLSFAGLTADARIL 89
              G+ T+  K     +IIA+  K  A    A Q  KK+I I+  +  + AG  AD    
Sbjct: 36  FAHGTTTLAFKYGG-GIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFW 94

Query: 90  ARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGV--GLLVAGYDDAGP 147
            R + M+C  Y+  + + + V     I+ N +      ++ +  G+  G ++ G+D  GP
Sbjct: 95  ERELAMQCRLYELRNGELISVAAASKILANIV------WNYKGMGLSMGTMICGWDKKGP 148

Query: 148 HIY 150
            ++
Sbjct: 149 GLF 151

Length = 247

>gnl|CDD|239728 cd03759, proteasome_beta_type_3, proteasome beta type-3 subunit

 Score = 37.2 bits (87), Expect = 0.003
 Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)

Query: 37  GSATVGLKNKTHAVIIALKRAASEL---AAHQKKIIVIDDHMGLSFAGLTADARILARFM 93
           G A V +  K    I +  R   +    +   +K+  I D + +  AGL  D + LA+ +
Sbjct: 3   GGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKL 62

Query: 94  RMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKR--PYGVGLLVAGYDDAG-PHI 149
           R     Y+   +  +      S++ + +      Y+KR  PY V  +VAG D  G P I
Sbjct: 63  RFRVNLYRLREEREIKPKTFSSLISSLL------YEKRFGPYFVEPVVAGLDPDGKPFI 115

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 195

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	251
cd03750	227	proteasome_alpha_type_2 proteasome_alpha_type_2. T	100.0
PTZ00246	253	proteasome subunit alpha; Provisional	100.0
KOG0176|consensus	241		100.0
PRK03996	241	proteasome subunit alpha; Provisional	100.0
cd03749	211	proteasome_alpha_type_1 proteasome_alpha_type_1. T	100.0
TIGR03633	224	arc_protsome_A proteasome endopeptidase complex, a	100.0
cd03751	212	proteasome_alpha_type_3 proteasome_alpha_type_3. T	100.0
cd03752	213	proteasome_alpha_type_4 proteasome_alpha_type_4. T	100.0
KOG0863|consensus	264		100.0
COG0638	236	PRE1 20S proteasome, alpha and beta subunits [Post	100.0
KOG0183|consensus	249		100.0
cd03756	211	proteasome_alpha_archeal proteasome_alpha_archeal.	100.0
cd03754	215	proteasome_alpha_type_6 proteasome_alpha_type_6. T	100.0
cd03755	207	proteasome_alpha_type_7 proteasome_alpha_type_7. T	100.0
cd03753	213	proteasome_alpha_type_5 proteasome_alpha_type_5. T	100.0
cd01911	209	proteasome_alpha proteasome alpha subunit. The 20S	100.0
KOG0181|consensus	233		100.0
KOG0178|consensus	249		100.0
KOG0182|consensus	246		100.0
KOG0184|consensus	254		100.0
PTZ00488	247	Proteasome subunit beta type-5; Provisional	100.0
TIGR03691	228	20S_bact_alpha proteasome, alpha subunit, bacteria	100.0
TIGR03690	219	20S_bact_beta proteasome, beta subunit, bacterial	100.0
cd03758	193	proteasome_beta_type_2 proteasome beta type-2 subu	100.0
cd03760	197	proteasome_beta_type_4 proteasome beta type-4 subu	100.0
cd03759	195	proteasome_beta_type_3 proteasome beta type-3 subu	100.0
cd03761	188	proteasome_beta_type_5 proteasome beta type-5 subu	100.0
cd03757	212	proteasome_beta_type_1 proteasome beta type-1 subu	100.0
TIGR03634	185	arc_protsome_B proteasome endopeptidase complex, a	100.0
cd03763	189	proteasome_beta_type_7 proteasome beta type-7 subu	100.0
cd03764	188	proteasome_beta_archeal Archeal proteasome, beta s	100.0
cd03762	188	proteasome_beta_type_6 proteasome beta type-6 subu	100.0
cd03765	236	proteasome_beta_bacterial Bacterial proteasome, be	100.0
PF00227	190	Proteasome: Proteasome subunit; InterPro: IPR00135	100.0
cd01912	189	proteasome_beta proteasome beta subunit. The 20S p	100.0
cd01906	182	proteasome_protease_HslV proteasome_protease_HslV.	100.0
KOG0175|consensus	285		100.0
KOG0185|consensus	256		100.0
KOG0179|consensus	235		100.0
KOG0177|consensus	200		100.0
KOG0173|consensus	271		100.0
KOG0174|consensus	224		100.0
KOG0180|consensus	204		99.97
PRK05456	172	ATP-dependent protease subunit HslV; Provisional	99.97
cd01901	164	Ntn_hydrolase The Ntn hydrolases (N-terminal nucle	99.97
cd01913	171	protease_HslV Protease HslV and the ATPase/chapero	99.97
TIGR03692	171	ATP_dep_HslV ATP-dependent protease HslVU, peptida	99.96
PF10584	23	Proteasome_A_N: Proteasome subunit A N-terminal si	99.53
COG5405	178	HslV ATP-dependent protease HslVU (ClpYQ), peptida	99.27
COG3484	255	Predicted proteasome-type protease [Posttranslatio	99.2
PF09894	194	DUF2121: Uncharacterized protein conserved in arch	96.75
COG4079	293	Uncharacterized protein conserved in archaea [Func	95.24

>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2

Probab=100.00  E-value=5.1e-62  Score=415.55  Aligned_cols=224  Identities=35%  Similarity=0.626  Sum_probs=215.9

Q ss_pred             CCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHHHHHH
Q psy1918          11 YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADARI   88 (251)
Q Consensus        11 yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~   88 (251)
                      ||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++++.  ++.+||++|++|++|++||+.+|++.
T Consensus         1 yd~~~t~fsp~Grl~QveyA~~av~~G~t~igik~~dgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~   80 (227)
T cd03750           1 YSFSLTTFSPSGKLVQIEYALAAVSSGAPSVGIKAANGVVLATEKKVPSPLIDESSVHKVEQITPHIGMVYSGMGPDFRV   80 (227)
T ss_pred             CCCCCceECCCCeEhHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecCCccccCCCCcceEEEEcCCEEEEEeEcHHhHHH
Confidence            8999999999999999999999999999999999999999999999987765  47899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEEcC
Q psy1918          89 LARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGS  168 (251)
Q Consensus        89 l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~G~  168 (251)
                      +.+.+|.+++.|++.+|++++++.++++|++.+|.|+++++.|||++++||+|||++||+||.+||+|++.+++++|+|+
T Consensus        81 l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~~g~~Ly~~d~~G~~~~~~~~a~G~  160 (227)
T cd03750          81 LVKKARKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEGGPYLYQVDPSGSYFTWKATAIGK  160 (227)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeCCCCEEEEECCCCCEEeeeEEEECC
Confidence            99999999999999999999999999999999999999999999999999999998899999999999999999999999


Q ss_pred             ChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHH
Q psy1918         169 RSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYL  238 (251)
Q Consensus       169 g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l  238 (251)
                      |++.++++|+++|+  ++|+++||++++++||+.+++||  +++++++|++|++++++++++++||+++|
T Consensus       161 g~~~~~~~Le~~~~--~~ms~eeai~l~~~~l~~~~~~~--l~~~~iev~iv~~~~~~~~~~~~ei~~~~  226 (227)
T cd03750         161 NYSNAKTFLEKRYN--EDLELEDAIHTAILTLKEGFEGQ--MTEKNIEIGICGETKGFRLLTPAEIKDYL  226 (227)
T ss_pred             CCHHHHHHHHhhcc--CCCCHHHHHHHHHHHHHHHhccc--CCCCcEEEEEEECCCCEEECCHHHHHHHh
Confidence            99999999999999  69999999999999999999886  58899999999987669999999999987

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>PTZ00246 proteasome subunit alpha; Provisional

Probab=100.00  E-value=1e-61  Score=419.90  Aligned_cols=235  Identities=35%  Similarity=0.512  Sum_probs=223.7

Q ss_pred             ccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHH
Q psy1918           9 NQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTAD   85 (251)
Q Consensus         9 ~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D   85 (251)
                      ++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++++.   ++.+|||+|+++++||++|+.+|
T Consensus         3 ~~yd~~~~~fsp~Grl~QvEYA~~av~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D   82 (253)
T PTZ00246          3 RRYDSRTTTFSPEGRLYQVEYALEAINNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTAD   82 (253)
T ss_pred             CccCCCCceECCCCEEhHHHHHHHHHHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHH
Confidence            489999999999999999999999999999999999999999999999999875   35799999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeEE
Q psy1918          86 ARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAM  164 (251)
Q Consensus        86 ~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~~  164 (251)
                      ++.+.+.+|.++..|++.++++++++.+++.++..+|.|+|+++.|||+|++||+|||+ +||+||.+||+|++.+++++
T Consensus        83 ~~~l~~~~r~~~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~~~~~~  162 (253)
T PTZ00246         83 ANILINQCRLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSGWKAT  162 (253)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCEecceEE
Confidence            99999999999999999999999999999999999999999999999999999999995 78999999999999999999


Q ss_pred             EEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCC-----ceEEecHHHHHHHHH
Q psy1918         165 AIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQ-----KFKTLDERETGHYLS  239 (251)
Q Consensus       165 a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~-----~~~~l~~~ei~~~l~  239 (251)
                      |+|+++..++++|++.|+  ++|+++||++++++||+.+..+|. .++.+++|++|+++|     .|++|+++||+++|+
T Consensus       163 a~G~gs~~~~~~Le~~~~--~~ms~eeai~l~~~al~~~~~~d~-~s~~~vev~ii~~~~~~~~~~~~~l~~~ei~~~l~  239 (253)
T PTZ00246        163 AIGQNNQTAQSILKQEWK--EDLTLEQGLLLAAKVLTKSMDSTS-PKADKIEVGILSHGETDGEPIQKMLSEKEIAELLK  239 (253)
T ss_pred             EECCCcHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHhccC-CCCCcEEEEEEecCCcCCCCCeEECCHHHHHHHHH
Confidence            999999999999999998  699999999999999999999986 788999999999864     389999999999999


Q ss_pred             Hhhhhhh
Q psy1918         240 LIEGEER  246 (251)
Q Consensus       240 ~~~~~~~  246 (251)
                      ++++++.
T Consensus       240 ~~~~~~~  246 (253)
T PTZ00246        240 KVTQEYA  246 (253)
T ss_pred             HHhhhhh
Confidence            9986653

>KOG0176|consensus

Probab=100.00  E-value=2.4e-61  Score=385.59  Aligned_cols=232  Identities=35%  Similarity=0.561  Sum_probs=219.9

Q ss_pred             cc--cccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeC
Q psy1918           6 KF--RNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAG   81 (251)
Q Consensus         6 ~~--~~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG   81 (251)
                      ||  |+.||+.+++|||||||||||||.+|++.|+|.|||+.++|||||+++|.+++|+  +...||++|++||+|++||
T Consensus         1 mfltrseydrgVNTfSpEGRlfQVEYaieAikLGsTaIGv~TkEgVvL~vEKritSpLm~p~sveKi~eid~HIgca~SG   80 (241)
T KOG0176|consen    1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLMEPSSVEKIVEIDDHIGCAMSG   80 (241)
T ss_pred             CcccHHHhcccccccCCCceeeehhhHHHHHhcCCceeeeeccceEEEEEeccccCcccCchhhhhheehhhceeeeccc
Confidence            55  9999999999999999999999999999999999999999999999999999987  5789999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcC-----CCCcceeeeeEEEEeCCCCeEEEECCCC
Q psy1918          82 LTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY-----DKRPYGVGLLVAGYDDAGPHIYQTCPSS  156 (251)
Q Consensus        82 ~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~-----~~rP~~v~~iv~G~d~~gp~ly~id~~G  156 (251)
                      +.+|++.+++..|.+|++|++.||++++++++++.++++..+|....     -.|||||++++||+|++||+||..||+|
T Consensus        81 l~aDarTlve~arv~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~~gpqL~h~dPSG  160 (241)
T KOG0176|consen   81 LIADARTLVERARVETQNHWFTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDETGPQLYHLDPSG  160 (241)
T ss_pred             cccchHHHHHHHHHHhhhceeecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccCCCceEEEeCCCC
Confidence            99999999999999999999999999999999999999987776442     2489999999999999999999999999


Q ss_pred             CeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHH
Q psy1918         157 NYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGH  236 (251)
Q Consensus       157 ~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~  236 (251)
                      ++.++++-|+|+|++-|++.|++.|+  ++++++||+.+++..|+.+++.  +++.+|+++++|++++.|++++++|+++
T Consensus       161 tf~~~~AKAIGSgsEga~~~L~~e~~--~~ltL~ea~~~~L~iLkqVMee--Kl~~~Nvev~~vt~e~~f~~~t~EE~~~  236 (241)
T KOG0176|consen  161 TFIRYKAKAIGSGSEGAESSLQEEYH--KDLTLKEAEKIVLKILKQVMEE--KLNSNNVEVAVVTPEGEFHIYTPEEVEQ  236 (241)
T ss_pred             ceEEecceeccccchHHHHHHHHHHh--hcccHHHHHHHHHHHHHHHHHH--hcCccceEEEEEcccCceEecCHHHHHH
Confidence            99999999999999999999999999  5999999999999999999964  4789999999999998899999999999


Q ss_pred             HHHHh
Q psy1918         237 YLSLI  241 (251)
Q Consensus       237 ~l~~~  241 (251)
                      ++.++
T Consensus       237 ~i~~~  241 (241)
T KOG0176|consen  237 VIKRL  241 (241)
T ss_pred             HHhcC
Confidence            98654

>PRK03996 proteasome subunit alpha; Provisional

Probab=100.00  E-value=7.4e-60  Score=405.66  Aligned_cols=232  Identities=39%  Similarity=0.577  Sum_probs=221.1

Q ss_pred             ccccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHH
Q psy1918           7 FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTA   84 (251)
Q Consensus         7 ~~~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~   84 (251)
                      ..++||.++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.+.++.  ++.+||++|+++++|++||+.+
T Consensus         6 ~~~~y~~~~~~fsp~Gr~~Q~eya~~av~~G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~   85 (241)
T PRK03996          6 QQMGYDRAITIFSPDGRLYQVEYAREAVKRGTTAVGVKTKDGVVLAVDKRITSPLIEPSSIEKIFKIDDHIGAASAGLVA   85 (241)
T ss_pred             cccccCCCCceECCCCeEhHHHHHHHHHHhCCCEEEEEeCCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEcccHH
Confidence            38999999999999999999999999999999999999999999999999987764  5789999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEE
Q psy1918          85 DARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAM  164 (251)
Q Consensus        85 D~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~  164 (251)
                      |++.++++++.++..|++.++++++++.+++++++.+|.|+++++.|||++++||||||++||+||.+||.|++.+++++
T Consensus        86 D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~~gp~Ly~id~~G~~~~~~~~  165 (241)
T PRK03996         86 DARVLIDRARVEAQINRLTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGAYLEYKAT  165 (241)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeCCcCEEEEECCCCCeecceEE
Confidence            99999999999999999999999999999999999999999999999999999999999889999999999999999999


Q ss_pred             EEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCC-ceEEecHHHHHHHHHHhh
Q psy1918         165 AIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQ-KFKTLDERETGHYLSLIE  242 (251)
Q Consensus       165 a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~-~~~~l~~~ei~~~l~~~~  242 (251)
                      |+|+++..++++|++.|+  ++|+++||++++++||+.+.+++  .++++++|++|+++| +|+.++++||+.++..+-
T Consensus       166 a~G~g~~~~~~~Le~~~~--~~~s~eeai~l~~~al~~~~~~~--~~~~~i~i~ii~~~~~~~~~~~~~ei~~~~~~~~  240 (241)
T PRK03996        166 AIGAGRDTVMEFLEKNYK--EDLSLEEAIELALKALAKANEGK--LDPENVEIAYIDVETKKFRKLSVEEIEKYLEKLL  240 (241)
T ss_pred             EECCCcHHHHHHHHHhcc--cCCCHHHHHHHHHHHHHHHhccC--CCCCcEEEEEEECCCCcEEECCHHHHHHHHHHhh
Confidence            999999999999999999  69999999999999999998753  688999999999986 499999999999998753

>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1

Probab=100.00  E-value=1.3e-59  Score=396.47  Aligned_cols=211  Identities=67%  Similarity=1.117  Sum_probs=203.5

Q ss_pred             CCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccccccCceEEEcCcEEEEEeCcHHHHHHHH
Q psy1918          11 YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTADARILA   90 (251)
Q Consensus        11 yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~   90 (251)
                      ||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++++.++.+|||+|+++++|++||+.+|++.+.
T Consensus         1 yd~~~t~fsp~Grl~Qveya~~av~~G~t~IgIk~~dgVvlaad~r~~~~l~~~~~KI~~I~~~i~~~~sG~~~D~~~l~   80 (211)
T cd03749           1 YDTDVTTWSPQGRLFQVEYAMEAVKQGSATVGLKSKTHAVLVALKRATSELSSYQKKIFKVDDHIGIAIAGLTADARVLS   80 (211)
T ss_pred             CCCCCceECCCCeEeHHHHHHHHHhcCCCEEEEEeCCEEEEEEeccCccccCCccccEEEeCCCEEEEEEeChHhHHHHH
Confidence            89999999999999999999999999999999999999999999999888877889999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEEcCCh
Q psy1918          91 RFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRS  170 (251)
Q Consensus        91 ~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~G~g~  170 (251)
                      +++|.+++.|+++++++++++.+++.+++.+|.|+++.+.|||+|++||+|||++||+||++||+|++.+++++|+|+++
T Consensus        81 ~~~r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~~gp~Ly~~Dp~G~~~~~~~~a~G~g~  160 (211)
T cd03749          81 RYMRQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDESGPHLFQTCPSGNYFEYKATSIGARS  160 (211)
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcCCCCeEEEECCCcCEeeeeEEEECCCc
Confidence            99999999999999999999999999999999999999999999999999999889999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEe
Q psy1918         171 QSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVG  221 (251)
Q Consensus       171 ~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~  221 (251)
                      +.++++||++|+++++|+++||+++|+++|+.++++|..++++++||++|+
T Consensus       161 ~~a~~~Le~~~~~~~~ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~  211 (211)
T cd03749         161 QSARTYLERHFEEFEDCSLEELIKHALRALRETLPGEQELTIKNVSIAIVG  211 (211)
T ss_pred             HHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence            999999999999767999999999999999999988743789999999984

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit

Probab=100.00  E-value=5.3e-59  Score=396.27  Aligned_cols=221  Identities=40%  Similarity=0.601  Sum_probs=211.0

Q ss_pred             ccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHHHH
Q psy1918           9 NQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADA   86 (251)
Q Consensus         9 ~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~   86 (251)
                      .+||.++|+|||+|||+|||||++|+++|+|+|||+++||||||+|++.+.++.  ++.+||++|+++++|++||+.+|+
T Consensus         1 ~~~~~~~~~f~p~Grl~Qieya~~av~~G~tvigi~~~dgvvlaad~r~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~   80 (224)
T TIGR03633         1 MGYDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKTKDGVVLAVDKRITSKLVEPSSIEKIFKIDDHIGAATSGLVADA   80 (224)
T ss_pred             CCCCCCCceECCCCeEeHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCccccCCCccceEEEECCCEEEEEeecHHhH
Confidence            489999999999999999999999999999999999999999999999987664  578999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEE
Q psy1918          87 RILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAI  166 (251)
Q Consensus        87 ~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~  166 (251)
                      +.+.+.++.++..|++.++++++++.++++|++.+|.|+++++.|||+|++||||+|++||+||.+||.|++.+++++|+
T Consensus        81 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~~~~~Ly~~D~~G~~~~~~~~a~  160 (224)
T TIGR03633        81 RVLIDRARIEAQINRLTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGALLEYKATAI  160 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeCCcCEEEEECCCCCeecceEEEE
Confidence            99999999999999999999999999999999999999999999999999999999988999999999999999999999


Q ss_pred             cCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCc-eEEecHHH
Q psy1918         167 GSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQK-FKTLDERE  233 (251)
Q Consensus       167 G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~-~~~l~~~e  233 (251)
                      |+++..++++|++.|+  |+|+++||++++++||+.+.+ |. .++++++|++|+++|+ |+.++++|
T Consensus       161 G~g~~~~~~~L~~~~~--~~~~~eeai~l~~~al~~~~~-d~-~~~~~i~i~ii~~~g~~~~~~~~~~  224 (224)
T TIGR03633       161 GAGRQAVTEFLEKEYR--EDLSLDEAIELALKALYSAVE-DK-LTPENVEVAYITVEDKKFRKLSVEE  224 (224)
T ss_pred             CCCCHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHHHhc-cc-CCCCcEEEEEEEcCCCcEEECCCCC
Confidence            9999999999999999  699999999999999999987 74 7899999999999874 99888775

This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.

>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3

Probab=100.00  E-value=7.8e-59  Score=391.80  Aligned_cols=209  Identities=33%  Similarity=0.464  Sum_probs=199.9

Q ss_pred             ccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHHHH
Q psy1918           9 NQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADA   86 (251)
Q Consensus         9 ~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~   86 (251)
                      ++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++.+.  ++.+|||+|++|++|++||+.+|+
T Consensus         2 ~~yd~~~t~fsp~Grl~Qveya~~a~~~G~tvIgik~kdgVvla~d~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~   81 (212)
T cd03751           2 TGYDLSASTFSPDGRVFQVEYANKAVENSGTAIGIRCKDGVVLAVEKLVTSKLYEPGSNKRIFNVDRHIGIAVAGLLADG   81 (212)
T ss_pred             CCccCCCceECCCCcchHHHHHHHHHhcCCCEEEEEeCCEEEEEEEccccccccCcchhcceeEecCcEEEEEEEChHhH
Confidence            689999999999999999999999999999999999999999999999988764  578999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEE
Q psy1918          87 RILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAI  166 (251)
Q Consensus        87 ~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~  166 (251)
                      +.+.+++|.+++.|++.++++++++.++++|++.+|.|++++++|||+|++||+|||++||+||.+||+|++.+++++|+
T Consensus        82 ~~l~~~~r~~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~~gp~Ly~~D~~Gs~~~~~~~a~  161 (212)
T cd03751          82 RHLVSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDSDGPQLYMIEPSGVSYGYFGCAI  161 (212)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeCCcCEEEEECCCCCEEeeEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999988999999999999999999999


Q ss_pred             cCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEE
Q psy1918         167 GSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLV  220 (251)
Q Consensus       167 G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii  220 (251)
                      |+|+..++++||+.|+  ++||++||+++++++|+.+++.+ .....++||+++
T Consensus       162 G~g~~~a~~~Lek~~~--~dms~eeai~l~~~~L~~~~~~~-~~~~~~iei~~~  212 (212)
T cd03751         162 GKGKQAAKTELEKLKF--SELTCREAVKEAAKIIYIVHDEI-KDKAFELELSWV  212 (212)
T ss_pred             CCCCHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHHHhhcc-CCCCccEEEEEC
Confidence            9999999999999998  69999999999999999999754 367889999874

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4

Probab=100.00  E-value=5.2e-58  Score=387.35  Aligned_cols=209  Identities=36%  Similarity=0.582  Sum_probs=201.0

Q ss_pred             ccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHH
Q psy1918           9 NQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTAD   85 (251)
Q Consensus         9 ~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D   85 (251)
                      ++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++++.   ++.+|||+|+++++|++||+.+|
T Consensus         1 ~~yd~~~~~fsp~Grl~Qveya~~a~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D   80 (213)
T cd03752           1 RRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSD   80 (213)
T ss_pred             CCcCCCCceECCCCEEhHHHhHHHHHhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHh
Confidence            479999999999999999999999999999999999999999999999998874   37899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeEE
Q psy1918          86 ARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAM  164 (251)
Q Consensus        86 ~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~~  164 (251)
                      ++.+.+++|.+++.|+++++++++++.+++.|+..+|.|+++++.|||+|++|++|||+ .||+||.+||+|++.+++++
T Consensus        81 ~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~~~~~  160 (213)
T cd03752          81 ANILINYARLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWKAT  160 (213)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCeeeeeEE
Confidence            99999999999999999999999999999999999999999999999999999999995 78999999999999999999


Q ss_pred             EEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEE
Q psy1918         165 AIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLV  220 (251)
Q Consensus       165 a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii  220 (251)
                      |+|+++..++++||+.|+  |+|+++||++++++||+.+.+||. ..+.+++|++|
T Consensus       161 a~G~gs~~~~~~Le~~y~--~~ms~eea~~l~~~al~~~~~r~~-~~~~~~ei~~~  213 (213)
T cd03752         161 AIGNNNQAAQSLLKQDYK--DDMTLEEALALAVKVLSKTMDSTK-LTSEKLEFATL  213 (213)
T ss_pred             EECCCcHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHhccC-CCCCcEEEEEC
Confidence            999999999999999998  799999999999999999999885 78889999875

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>KOG0863|consensus

Probab=100.00  E-value=3.3e-58  Score=375.40  Aligned_cols=240  Identities=63%  Similarity=1.054  Sum_probs=233.0

Q ss_pred             cccccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccccccCceEEEcCcEEEEEeCcHHH
Q psy1918           6 KFRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTAD   85 (251)
Q Consensus         6 ~~~~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~~~~~Ki~~i~~~i~~~~sG~~~D   85 (251)
                      |||++||.++|+|||+|||+|||||++|++.|+++||+|+++.+||++-++..+.|.+.++|||+||+|++++++|+.+|
T Consensus         1 Mfrnqyd~d~t~wsPqGrl~QvEya~EavkqGsatVGLks~thaVLvAl~r~~seLss~QkKi~~iD~h~g~siAGLt~D   80 (264)
T KOG0863|consen    1 MFRNQYDNDVTTWSPQGRLHQVEYAMEAVKQGSATVGLKSRTHAVLVALKRAQSELSSHQKKIFKIDDHIGISIAGLTAD   80 (264)
T ss_pred             CCcccccCceeEECCcceehHHHHHHHHHhcccceEeecccceEEEeeeccchhHHHHhhheeEecccccceEEeccCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEE
Q psy1918          86 ARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMA  165 (251)
Q Consensus        86 ~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a  165 (251)
                      ++.+.+++|.+|..+++.+++++++..+...|++.+|..||+.+.|||||.++++|+|+.|||||.++|+|++.+++..+
T Consensus        81 arvl~~Ylr~ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe~G~hl~e~~Psg~v~e~~g~s  160 (264)
T KOG0863|consen   81 ARVLSRYLRQECLNSRFIYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDESGPHLYEFCPSGNVFECKGMS  160 (264)
T ss_pred             hHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecCCCceeEEEcCCccEEEEeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHHhhhhh
Q psy1918         166 IGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEE  245 (251)
Q Consensus       166 ~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~~~~~~  245 (251)
                      +|+.++.++++||+++.+|++++.||++..++.||+..+..|..+.+.+++|+|+.++.+|+.++.+++.+++...++.+
T Consensus       161 IGsRSQsARTyLEr~~e~f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~pf~~~d~~~~~k~~~~~~~~~  240 (264)
T KOG0863|consen  161 IGSRSQSARTYLERNLEEFEDSSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDEPFTILDQKDVAKYVDLFKKVD  240 (264)
T ss_pred             cccchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCCceEeecHHHHHHHHHHhhcCC
Confidence            99999999999999999999999999999999999999987766899999999999999999999999999987766443

>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4e-57  Score=386.68  Aligned_cols=231  Identities=42%  Similarity=0.677  Sum_probs=219.5

Q ss_pred             ccCCCCceeecCCCcchhhchHHHHHhcC-CcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHH
Q psy1918           9 NQYDSDVTVWSPQGRLHQVEYAMEAVKQG-SATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTA   84 (251)
Q Consensus         9 ~~yd~~~t~fsp~G~l~QvEya~~a~~~G-~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~   84 (251)
                      .+||+.+|+|||+|+++|+|||.+++++| +|+|||+++||||||+|+|.++++.   ++.+|||+|+|||+|++||+.+
T Consensus         1 ~~~~~~~~~fsp~g~l~q~e~a~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~a   80 (236)
T COG0638           1 AGYDRAITIFSPEGRLFQVEYALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAA   80 (236)
T ss_pred             CCCcCcceeECCCCchHHHHHHHHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcH
Confidence            47999999999999999999999999886 9999999999999999999999964   4689999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEE
Q psy1918          85 DARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAM  164 (251)
Q Consensus        85 D~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~  164 (251)
                      |++.+++++|.+++.|++.++++++++.+++++++.+|.|+++  +|||+|+++|||+|+++|+||++||+|++.++++.
T Consensus        81 Da~~lv~~~r~~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~--~rP~gv~~iiaG~d~~~p~Ly~~Dp~G~~~~~~~~  158 (236)
T COG0638          81 DAQVLVRYARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQS--GRPYGVSLLVAGVDDGGPRLYSTDPSGSYNEYKAT  158 (236)
T ss_pred             hHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccC--cccceEEEEEEEEcCCCCeEEEECCCCceeecCEE
Confidence            9999999999999999999999999999999999999999987  79999999999999878999999999999999999


Q ss_pred             EEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHHhhhh
Q psy1918         165 AIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGE  244 (251)
Q Consensus       165 a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~~~~~  244 (251)
                      |+|+|++.++++||+.|+  ++|++|||++++++||+.+++||. .++++++|++|+++.+++.+++++++.++.++.++
T Consensus       159 a~Gsgs~~a~~~Le~~y~--~~m~~eeai~la~~al~~a~~rd~-~s~~~~~v~vi~~~~~~~~~~~~~~~~~~~~~~~~  235 (236)
T COG0638         159 AIGSGSQFAYGFLEKEYR--EDLSLEEAIELAVKALRAAIERDA-ASGGGIEVAVITKDEGFRKLDGEEIKKLLDDLSEK  235 (236)
T ss_pred             EEcCCcHHHHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHhccc-cCCCCeEEEEEEcCCCeEEcCHHHHHHHHHHHhhc
Confidence            999999999999999998  699999999999999999999996 67888899999996569999999999999888754

>KOG0183|consensus

Probab=100.00  E-value=2.9e-58  Score=372.14  Aligned_cols=234  Identities=37%  Similarity=0.588  Sum_probs=222.4

Q ss_pred             ccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHHHH
Q psy1918           9 NQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADA   86 (251)
Q Consensus         9 ~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~   86 (251)
                      ++||+-+|+|||||+|||||||++|+++|+|+||++++|+|||+.+++...+|.  +...||..+++|++|+++|+.+|+
T Consensus         2 srydraltvFSPDGhL~QVEYAqEAvrkGstaVgvrg~~~vvlgvEkkSv~~Lq~~r~~rkI~~ld~hV~mafaGl~aDA   81 (249)
T KOG0183|consen    2 SRYDRALTVFSPDGHLFQVEYAQEAVRKGSTAVGVRGNNCVVLGVEKKSVPKLQDERTVRKISMLDDHVVMAFAGLTADA   81 (249)
T ss_pred             CccccceEEECCCCCEEeeHhHHHHHhcCceEEEeccCceEEEEEeecchhhhhhhhhhhhheeecceeeEEecCCCccc
Confidence            579999999999999999999999999999999999999999999999988886  468999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCC-CeEEEECCCCCeeeeeEEE
Q psy1918          87 RILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAG-PHIYQTCPSSNYYDVKAMA  165 (251)
Q Consensus        87 ~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~g-p~ly~id~~G~~~~~~~~a  165 (251)
                      +.+++.+|.+|++|++..+.|++++.++++|+.+.|.|||..|.||||++.+|+|||++| |+||..||+|.+++|++.|
T Consensus        82 rilinrArvecqShrlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewka~a  161 (249)
T KOG0183|consen   82 RILINRARVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWKANA  161 (249)
T ss_pred             eeehhhHhHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcchhhhhccc
Confidence            999999999999999999999999999999999999999999999999999999999876 9999999999999999999


Q ss_pred             EcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHHhhhhh
Q psy1918         166 IGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEE  245 (251)
Q Consensus       166 ~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~~~~~~  245 (251)
                      +|.++..+..+|||+|++.+-.+..+++++++++|.++..    ..+.++|++++.+.+.++.|+.++|+.++..++++.
T Consensus       162 iGr~sk~VrEflEK~y~e~~~~~~~~~ikL~ir~LleVvq----s~~~nie~aVm~~~~~~~~l~~~~I~~~v~~ie~E~  237 (249)
T KOG0183|consen  162 IGRSSKTVREFLEKNYKEEAIATEGETIKLAIRALLEVVQ----SGGKNIEVAVMKRRKDLKMLESEEIDDIVKEIEQEE  237 (249)
T ss_pred             cccccHHHHHHHHHhcccccccccccHHHHHHHHHHHHhh----cCCCeeEEEEEecCCceeecCHHHHHHHHHHHHHHH
Confidence            9999999999999999875557889999999999999983    567899999999987799999999999999999765


Q ss_pred             h
Q psy1918         246 R  246 (251)
Q Consensus       246 ~  246 (251)
                      +
T Consensus       238 e  238 (249)
T KOG0183|consen  238 E  238 (249)
T ss_pred             H
Confidence            4

>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal

Probab=100.00  E-value=4.2e-57  Score=381.33  Aligned_cols=208  Identities=42%  Similarity=0.604  Sum_probs=200.5

Q ss_pred             cCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHHHHH
Q psy1918          10 QYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADAR   87 (251)
Q Consensus        10 ~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~~   87 (251)
                      +||+++|+|||+|||+|+|||++|+++|+|+|||+++||||||+|++.+.++.  ++.+||++|+++++|++||+.+|++
T Consensus         1 ~y~~~~~~fsp~G~l~Q~eya~~av~~G~t~igik~~dgvvla~d~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~   80 (211)
T cd03756           1 GYDRAITVFSPDGRLYQVEYAREAVKRGTTALGIKCKEGVVLAVDKRITSKLVEPESIEKIYKIDDHVGAATSGLVADAR   80 (211)
T ss_pred             CCCCCCceECCCCeEhHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEecCHHHHH
Confidence            69999999999999999999999999999999999999999999999987664  5789999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEEc
Q psy1918          88 ILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIG  167 (251)
Q Consensus        88 ~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~G  167 (251)
                      .+.+.++.+++.|+++++++++++.+++.|++.++.|+++++.|||+++++|+|||++||+||.+||.|++.+++++|+|
T Consensus        81 ~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~~~~ly~vd~~G~~~~~~~~a~G  160 (211)
T cd03756          81 VLIDRARVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGAYNEYKATAIG  160 (211)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeCCCCEEEEECCCCCeeeeEEEEEC
Confidence            99999999999999999999999999999999999999999999999999999999989999999999999999999999


Q ss_pred             CChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEe
Q psy1918         168 SRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVG  221 (251)
Q Consensus       168 ~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~  221 (251)
                      ++++.++++|++.|+  |+|+++||++++++||+.+.++|  .++++++|++|+
T Consensus       161 ~g~~~~~~~Le~~~~--~~m~~~ea~~l~~~~l~~~~~~~--~~~~~~~v~ii~  210 (211)
T cd03756         161 SGRQAVTEFLEKEYK--EDMSLEEAIELALKALYAALEEN--ETPENVEIAYVT  210 (211)
T ss_pred             CCCHHHHHHHHhhcc--CCCCHHHHHHHHHHHHHHHhccc--CCCCcEEEEEEe
Confidence            999999999999999  79999999999999999998876  489999999986

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6

Probab=100.00  E-value=3.7e-57  Score=382.56  Aligned_cols=209  Identities=33%  Similarity=0.578  Sum_probs=197.8

Q ss_pred             cCCCCceeecCCCcchhhchHHHHHhc-CCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHHHH
Q psy1918          10 QYDSDVTVWSPQGRLHQVEYAMEAVKQ-GSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADA   86 (251)
Q Consensus        10 ~yd~~~t~fsp~G~l~QvEya~~a~~~-G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~   86 (251)
                      +||+++|+|||||||+|||||++|+++ |+|+|||+++||||||+|++.+.++.  +..+|||+|+++++|++||+.+|+
T Consensus         1 ~yd~~~~~fsp~Grl~Qveya~~a~~~~g~t~igi~~~d~Vvlaad~r~~~~~i~~~~~~Ki~~I~~~i~~~~sG~~~D~   80 (215)
T cd03754           1 GFDRHITIFSPEGRLYQVEYAFKAVKNAGLTSVAVRGKDCAVVVTQKKVPDKLIDPSTVTHLFRITDEIGCVMTGMIADS   80 (215)
T ss_pred             CCCCCCeeECCCCeEeHHHhHHHHHhcCCccEEEEEeCCEEEEEEeccccccccCCcccCceEEEcCCEEEEEEechhhH
Confidence            699999999999999999999999975 78999999999999999999988764  478899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeEEE
Q psy1918          87 RILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMA  165 (251)
Q Consensus        87 ~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~~a  165 (251)
                      +.+.+++|.++..|++.++++++++.+|+.+++++|.|+++++.|||++++||||||+ +||+||++||+|++.+++++|
T Consensus        81 ~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~~~a  160 (215)
T cd03754          81 RSQVQRARYEAAEFKYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYKATA  160 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEeEEEEE
Confidence            9999999999999999999999999999999999999999999999999999999995 789999999999999999999


Q ss_pred             EcCChHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEE
Q psy1918         166 IGSRSQSARTYLEKRLADFPEA--SLEEIVKHGLRALRDTLPNDSELTTKNVSIGLV  220 (251)
Q Consensus       166 ~G~g~~~a~~~L~~~~~~~~~~--s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii  220 (251)
                      +|++++.++++||++|++..+|  |++||++++++||+.+.+||  .+++++||++|
T Consensus       161 ~G~gs~~~~~~Le~~~~~~~~~~~s~eeai~l~~~al~~~~~rd--~~~~~~ei~~~  215 (215)
T cd03754         161 AGVKEQEATNFLEKKLKKKPDLIESYEETVELAISCLQTVLSTD--FKATEIEVGVV  215 (215)
T ss_pred             ECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHhccc--CCCCcEEEEEC
Confidence            9999999999999999853357  99999999999999999998  46889999985

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7

Probab=100.00  E-value=3.5e-57  Score=380.72  Aligned_cols=204  Identities=37%  Similarity=0.624  Sum_probs=195.6

Q ss_pred             CCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHHHHHH
Q psy1918          11 YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADARI   88 (251)
Q Consensus        11 yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~   88 (251)
                      ||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.+..+.  +..+||++|++|++|++||+.+|++.
T Consensus         1 ~d~~~~~fsp~Gr~~Qveya~~av~~G~t~Igik~~dgVvlaad~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~   80 (207)
T cd03755           1 YDRAITVFSPDGHLFQVEYAQEAVRKGTTAVGVRGKDCVVLGVEKKSVAKLQDPRTVRKICMLDDHVCLAFAGLTADARV   80 (207)
T ss_pred             CCCCCceECCCCeEeHHHHHHHHHHcCCCEEEEEeCCEEEEEEecCCCCcccCCCccCcEEEECCCEEEEEecchhhHHH
Confidence            8999999999999999999999999999999999999999999999877764  36899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeEEEEc
Q psy1918          89 LARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIG  167 (251)
Q Consensus        89 l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~~a~G  167 (251)
                      +.+.+|.+++.|++.++++++++.+++.+++.+|.|+++++.|||+++++|+|||+ +||+||.+||+|++.+++++|+|
T Consensus        81 l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~a~G  160 (207)
T cd03755          81 LINRARLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKANAIG  160 (207)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEEcceEEEEC
Confidence            99999999999999999999999999999999999999999999999999999996 58999999999999999999999


Q ss_pred             CChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEE
Q psy1918         168 SRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLV  220 (251)
Q Consensus       168 ~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii  220 (251)
                      +|+..++++||++|+  |+|+++||++++++||+.+.+    .+++++||+++
T Consensus       161 ~gs~~~~~~Le~~~~--~~ms~eeai~l~~~~l~~~~~----~~~~~~e~~~~  207 (207)
T cd03755         161 RNSKTVREFLEKNYK--EEMTRDDTIKLAIKALLEVVQ----SGSKNIELAVM  207 (207)
T ss_pred             CCCHHHHHHHHhhcc--CCCCHHHHHHHHHHHHHHHhC----CCCCeEEEEEC
Confidence            999999999999998  699999999999999999984    47889999985

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5

Probab=100.00  E-value=1.6e-55  Score=372.16  Aligned_cols=206  Identities=37%  Similarity=0.606  Sum_probs=195.8

Q ss_pred             CCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHHHHHH
Q psy1918          11 YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADARI   88 (251)
Q Consensus        11 yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~   88 (251)
                      ||.++|+|||||||+|||||++++++|+|+|||+++||||||+|++.++++.  ++.+||++|+++++|++||+.+|++.
T Consensus         1 ~~~~~~~f~p~G~~~Q~eya~~a~~~G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~   80 (213)
T cd03753           1 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIKTKEGVVLAVEKRITSPLMEPSSVEKIMEIDDHIGCAMSGLIADART   80 (213)
T ss_pred             CCCCCccCCCCCeEhHHHHHHHHHhcCCCEEEEEeCCEEEEEEecccCCcCcCCCccceEEEEcCCEEEEEecCHHHHHH
Confidence            8999999999999999999999999999999999999999999999987764  56899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcC-----CCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeE
Q psy1918          89 LARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY-----DKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKA  163 (251)
Q Consensus        89 l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~-----~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~  163 (251)
                      +.+.+|.+++.|++.++++++++.+++.+++.++.|+++.     ..|||+|++||+|||++||+||.+||.|++.++++
T Consensus        81 l~~~~r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~~gp~Ly~vd~~G~~~~~~~  160 (213)
T cd03753          81 LIDHARVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDENGPQLFHTDPSGTFTRCDA  160 (213)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcCCCCEEEEECCCCCeecccE
Confidence            9999999999999999999999999999999999998754     46999999999999999999999999999999999


Q ss_pred             EEEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEE
Q psy1918         164 MAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLV  220 (251)
Q Consensus       164 ~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii  220 (251)
                      +|+|++++.++++|+++|+  ++|+++||++++++||+.+..++  ++++++||++|
T Consensus       161 ~a~G~~~~~~~~~L~~~~~--~~ls~eeai~l~~~~l~~~~~~~--~~~~~~ei~~~  213 (213)
T cd03753         161 KAIGSGSEGAQSSLQEKYH--KDMTLEEAEKLALSILKQVMEEK--LNSTNVELATV  213 (213)
T ss_pred             EEECCCcHHHHHHHHhhcc--CCCCHHHHHHHHHHHHHHHhccc--CCCCcEEEEEC
Confidence            9999999999999999999  69999999999999999988765  68899999985

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd01911 proteasome_alpha proteasome alpha subunit

Probab=100.00  E-value=1.4e-55  Score=371.49  Aligned_cols=206  Identities=48%  Similarity=0.772  Sum_probs=198.6

Q ss_pred             CCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHHHHHH
Q psy1918          11 YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADARI   88 (251)
Q Consensus        11 yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~   88 (251)
                      ||.++|+|||||||+|+|||++++++|+|+|||+++||||||+|++.+.++.  ++.+|||+|+++++|++||..+|++.
T Consensus         1 ~~~~~~~f~~~G~~~q~eya~~~~~~G~tvigi~~~dgVvlaaD~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~   80 (209)
T cd01911           1 YDRSITTFSPEGRLFQVEYALEAVKNGSTAVGIKGKDGVVLAVEKKVTSKLLDPSSVEKIFKIDDHIGCAVAGLTADARV   80 (209)
T ss_pred             CCCCCccCCCCCEEeHHHHHHHHHHcCCCEEEEEECCEEEEEEEecCCccccCCcccceEEEecCCeEEEeccCcHhHHH
Confidence            8999999999999999999999999999999999999999999999988764  57899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCC-CCeEEEECCCCCeeeeeEEEEc
Q psy1918          89 LARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA-GPHIYQTCPSSNYYDVKAMAIG  167 (251)
Q Consensus        89 l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~-gp~ly~id~~G~~~~~~~~a~G  167 (251)
                      +.+.++.++..|++.+|++++++.+|+++++.+|.|++++++|||+|+++|+|||++ ||+||.+||.|++.+++++++|
T Consensus        81 l~~~l~~~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~a~G  160 (209)
T cd01911          81 LVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAIG  160 (209)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCeeeeeEEEeC
Confidence            999999999999999999999999999999999999999999999999999999975 8999999999999999999999


Q ss_pred             CChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEE
Q psy1918         168 SRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLV  220 (251)
Q Consensus       168 ~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii  220 (251)
                      +|+..++++|++.|+  |+|+++||++++++||+.+.+||.  ++++++|+++
T Consensus       161 ~g~~~~~~~L~~~~~--~~ms~~ea~~l~~~~l~~~~~~d~--~~~~~~i~i~  209 (209)
T cd01911         161 KGSQEAKTFLEKRYK--KDLTLEEAIKLALKALKEVLEEDK--KAKNIEIAVV  209 (209)
T ss_pred             CCcHHHHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHhccC--CCCcEEEEEC
Confidence            999999999999999  799999999999999999999994  8889999875

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.

>KOG0181|consensus

Probab=100.00  E-value=9e-56  Score=352.88  Aligned_cols=231  Identities=33%  Similarity=0.580  Sum_probs=220.8

Q ss_pred             cccccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCcccccc--ccCceEEEcCcEEEEEeCcH
Q psy1918           6 KFRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAA--HQKKIIVIDDHMGLSFAGLT   83 (251)
Q Consensus         6 ~~~~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~~--~~~Ki~~i~~~i~~~~sG~~   83 (251)
                      |-..+|..++|+|||+|||.|+|||+.|+.+|.+.|||+-.||||||++++..+.|.+  ...|+++|.++|+|.+||..
T Consensus         1 m~d~~y~fslTtFSpsGKL~QieyAL~Av~~G~~SvGi~A~nGvVlatekk~~s~L~~~~sv~KV~~i~~~IG~vYSGmg   80 (233)
T KOG0181|consen    1 MGDFGYSFSLTTFSPSGKLVQIEYALTAVVNGQTSVGIKAANGVVLATEKKDVSPLVDEESVRKVEKITPHIGCVYSGMG   80 (233)
T ss_pred             CCCcccceeeEEEcCCCceehHHHHHHHHhCCCCceeeeecCceEEEeccCCCCccchhhhhhhHhhccCCcceEEecCC
Confidence            4567899999999999999999999999999999999999999999999998888864  67999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeE
Q psy1918          84 ADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKA  163 (251)
Q Consensus        84 ~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~  163 (251)
                      +|++.+++..|+.++.|+..|++++|+..+...++..+|+|||..|.||||+++++||||+++|.||++||+|++..|++
T Consensus        81 pD~RvlV~~~rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~~~p~LyQvdPSGsyf~wka  160 (233)
T KOG0181|consen   81 PDYRVLVHKSRKIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDEGGPLLYQVDPSGSYFAWKA  160 (233)
T ss_pred             CceeehhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecCCCceeEEEECCccceeehhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHHh
Q psy1918         164 MAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLI  241 (251)
Q Consensus       164 ~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~~  241 (251)
                      +|+|.+...++++||++|.  +++.+++++..|+-+|++.++-+  ...+++||+++..++ |++|++.||+.+|..+
T Consensus       161 tA~Gkn~v~aktFlEkR~~--edleldd~ihtailtlkE~fege--~~~~nieigv~~~~~-F~~lt~~eI~d~l~~l  233 (233)
T KOG0181|consen  161 TAMGKNYVNAKTFLEKRYN--EDLELDDAIHTAILTLKESFEGE--MTAKNIEIGVCGENG-FRRLTPAEIEDYLASL  233 (233)
T ss_pred             hhhccCcchHHHHHHHHhc--cccccchHHHHHHHHHHHHhccc--cccCceEEEEecCCc-eeecCHHHHHHHHhcC
Confidence            9999999999999999998  59999999999999999999765  688999999999775 9999999999998753

>KOG0178|consensus

Probab=100.00  E-value=4.9e-55  Score=352.54  Aligned_cols=238  Identities=33%  Similarity=0.531  Sum_probs=223.9

Q ss_pred             ccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHH
Q psy1918           9 NQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTAD   85 (251)
Q Consensus         9 ~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D   85 (251)
                      ..||+-.|+|||||||+|||||++++.+.+|+|||-++||||||++++.+++|.   ...+||++|+|+++|+.+|+.+|
T Consensus         3 r~ydsrttiFspEGRLyQVEyAmeais~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~D   82 (249)
T KOG0178|consen    3 RRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSD   82 (249)
T ss_pred             cCcCCcccccCCCcchHHHHHHHHHHhhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEeccccc
Confidence            469999999999999999999999999999999999999999999999999986   36799999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeEE
Q psy1918          86 ARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAM  164 (251)
Q Consensus        86 ~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~~  164 (251)
                      +..+++.+|..+++|.+.+|+++|++.|+..|++..|.|||+.|.||||||++.+|||+ .|.+||..||+|++..|++.
T Consensus        83 AnvL~n~aRi~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gWka~  162 (249)
T KOG0178|consen   83 ANVLKNYARIIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGWKAT  162 (249)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCcccccee
Confidence            99999999999999999999999999999999999999999999999999999999997 57999999999999999999


Q ss_pred             EEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCC---ceEEecHHHHHHHHHHh
Q psy1918         165 AIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQ---KFKTLDERETGHYLSLI  241 (251)
Q Consensus       165 a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~---~~~~l~~~ei~~~l~~~  241 (251)
                      ++|..+..|+..|+.-|++ ..++++||..+|++.|...++.+. +..+.+||+.++++.   .+++++++||.++|.++
T Consensus       163 ciG~N~~Aa~s~Lkqdykd-d~~~~~eA~~laikvL~kt~d~~~-lt~eklEia~~~k~~~k~v~~i~~~~ev~kll~k~  240 (249)
T KOG0178|consen  163 CIGANSGAAQSMLKQDYKD-DENDLEEAKALAIKVLSKTLDSGS-LTAEKLEIATITKDCNKTVLKILKKDEVLKLLEKY  240 (249)
T ss_pred             eeccchHHHHHHHHhhhcc-ccccHHHHHHHHHHHHHhhcccCC-CChhheEEEEEEecCCceEEEecCHHHHHHHHHHh
Confidence            9999999999999999986 456799999999999999998874 788999999999864   47899999999999998


Q ss_pred             hhhhhcc
Q psy1918         242 EGEERRG  248 (251)
Q Consensus       242 ~~~~~~~  248 (251)
                      .+.++.+
T Consensus       241 ~~~~~~~  247 (249)
T KOG0178|consen  241 HETQRQA  247 (249)
T ss_pred             hhhhhhc
Confidence            8766544

>KOG0182|consensus

Probab=100.00  E-value=7.8e-55  Score=351.63  Aligned_cols=237  Identities=31%  Similarity=0.521  Sum_probs=225.0

Q ss_pred             ccccCCCCceeecCCCcchhhchHHHHHhc-CCcEEEeeeCCeEEEEEeccCcccccc--ccCceEEEcCcEEEEEeCcH
Q psy1918           7 FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQ-GSATVGLKNKTHAVIIALKRAASELAA--HQKKIIVIDDHMGLSFAGLT   83 (251)
Q Consensus         7 ~~~~yd~~~t~fsp~G~l~QvEya~~a~~~-G~tvigi~~~dgVvla~d~~~~~~l~~--~~~Ki~~i~~~i~~~~sG~~   83 (251)
                      +..+||+++|||||||||+|||||+||+++ |-|+||++++|++|+++.++.+.+|.+  ....+|+|..+++|+++|..
T Consensus         5 s~agfDrhitIFspeGrLyQVEYafkAin~~gltsVavrgkDcavvvsqKkvpDKLld~~tvt~~f~itk~ig~v~tG~~   84 (246)
T KOG0182|consen    5 SSAGFDRHITIFSPEGRLYQVEYAFKAINQAGLTSVAVRGKDCAVVVTQKKVPDKLLDSSTVTHLFRITKKIGCVITGMI   84 (246)
T ss_pred             CcCCccceEEEECCCceEEeeehHHHHhhcCCCceEEEcCCceEEEEecccCcccccccccceeEEEeeccceEEEecCC
Confidence            478999999999999999999999999998 789999999999999999999999974  57999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeee
Q psy1918          84 ADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVK  162 (251)
Q Consensus        84 ~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~  162 (251)
                      +|++..+.++|.++.++++.||.+||++-|++.+++..|.|||+..|||+||.+++.|+|+ .||.||.+||.|.+..++
T Consensus        85 aDar~~v~rar~eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy~g~k  164 (246)
T KOG0182|consen   85 ADARSQVQRARYEAAEFRYKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAGYYYGFK  164 (246)
T ss_pred             cchHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCccccccce
Confidence            9999999999999999999999999999999999999999999999999999999999986 689999999999999999


Q ss_pred             EEEEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCc-eEEecHHHHHHHHHHh
Q psy1918         163 AMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQK-FKTLDERETGHYLSLI  241 (251)
Q Consensus       163 ~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~-~~~l~~~ei~~~l~~~  241 (251)
                      ++|.|.....+..+||++|++..++|.+|++++++.||..++.-|.  ..+++||++++.+.+ |++|+.+||+.+|+.|
T Consensus       165 AtaaG~Kq~e~tsfLEKk~Kk~~~~t~~e~ve~ai~al~~sl~~Df--k~se~EVgvv~~~~p~f~~Ls~~eie~hL~~I  242 (246)
T KOG0182|consen  165 ATAAGVKQQEATSFLEKKYKKDIDLTFEETVETAISALQSSLGIDF--KSSELEVGVVTVDNPEFRILSAEEIEEHLQAI  242 (246)
T ss_pred             eeecccchhhHHHHHHHhhccCccchHHHHHHHHHHHHHHHHhccc--CCcceEEEEEEcCCcceeeccHHHHHHHHHHh
Confidence            9999999999999999999965568899999999999999998884  677999999998765 9999999999999999


Q ss_pred             hhhh
Q psy1918         242 EGEE  245 (251)
Q Consensus       242 ~~~~  245 (251)
                      .+.|
T Consensus       243 AEkd  246 (246)
T KOG0182|consen  243 AEKD  246 (246)
T ss_pred             hhcC
Confidence            8764

>KOG0184|consensus

Probab=100.00  E-value=7.1e-54  Score=348.29  Aligned_cols=232  Identities=29%  Similarity=0.442  Sum_probs=209.0

Q ss_pred             cccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHHH
Q psy1918           8 RNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTAD   85 (251)
Q Consensus         8 ~~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D   85 (251)
                      -++||...++|||+||+||+|||+||+.+|+|+||||||||||+++|+..+++|+  ....|||.|++||+|+++|+.+|
T Consensus         5 GtGyDls~s~fSpdGrvfQveYA~KAven~~T~IGIk~kdGVVl~vEKli~SkLy~p~sn~ri~~V~r~iG~avaGl~~D   84 (254)
T KOG0184|consen    5 GTGYDLSASTFSPDGRVFQVEYAQKAVENSGTCIGIKCKDGVVLAVEKLITSKLYEPGSNERIFSVDRHIGMAVAGLIPD   84 (254)
T ss_pred             cccccccceeeCCCCceehHHHHHHHHhcCCcEEEEecCCeEEEEEeeeecccccccCCCCceEeecccccEEEeccccc
Confidence            5789999999999999999999999999999999999999999999999999986  47789999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEE
Q psy1918          86 ARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMA  165 (251)
Q Consensus        86 ~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a  165 (251)
                      .+.+..++|.++.+|+.+|+.++|...++..++.+.|.||.++..||||++.++++||++||+||.++|+|..+.++.+|
T Consensus        85 g~~l~~~ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~~g~~LymiepSG~~~~Y~~aa  164 (254)
T KOG0184|consen   85 GRHLVNRARDEAASWRKNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDDEGPQLYMIEPSGSSYGYKGAA  164 (254)
T ss_pred             hHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEEEeCCCceEEEEcCCCCccceeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecC-CceEEecHHHHHHHHHHhh
Q psy1918         166 IGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQN-QKFKTLDERETGHYLSLIE  242 (251)
Q Consensus       166 ~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~-~~~~~l~~~ei~~~l~~~~  242 (251)
                      +|.|.+.|++.|||+--  .+|+.+|+++.+.+.++.+.+.. +-..-.+||.++..+ ++.+..-|.|+.+...+.+
T Consensus       165 iGKgrq~aKtElEKL~~--~~mt~~e~VkeaakIiY~~HDe~-KdK~feiEm~wvg~eTnG~h~~vp~el~~ea~~~a  239 (254)
T KOG0184|consen  165 IGKGRQAAKTELEKLKI--DEMTCKELVKEAAKIIYKVHDEN-KDKEFEIEMGWVGEETNGLHEKVPSELLEEAEKYA  239 (254)
T ss_pred             ccchhHHHHHHHHhccc--ccccHHHHHHHHHheeEeecccc-cCcceEEEEEEEEeecCCccccCcHHHHHHHHHHH
Confidence            99999999999999843  58999999999999999887532 223336888999864 3344444556655544444

>PTZ00488 Proteasome subunit beta type-5; Provisional

Probab=100.00  E-value=2.6e-46  Score=321.67  Aligned_cols=206  Identities=19%  Similarity=0.262  Sum_probs=191.9

Q ss_pred             HHhcCCcEEEeeeCCeEEEEEeccCccc-cc--cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q psy1918          33 AVKQGSATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLP  109 (251)
Q Consensus        33 a~~~G~tvigi~~~dgVvla~d~~~~~~-l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~  109 (251)
                      .+.+|+|+|||+++||||||+|++.+++ +.  ++.+|||+|++|++|++||+.+|++.+.+++|.+++.|++.+|++++
T Consensus        35 ~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~is  114 (247)
T PTZ00488         35 EFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELIS  114 (247)
T ss_pred             ccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence            4578999999999999999999999875 33  57899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCcce--eeeeEEEEeCCCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCC
Q psy1918         110 VFRLISIVGNKMQVCTQRYDKRPYG--VGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEA  187 (251)
Q Consensus       110 ~~~la~~l~~~~~~yt~~~~~rP~~--v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~  187 (251)
                      ++.+|++|+++++.+      ||++  +++||||||++||+||++||+|++.+++++|+|+|+..++++||+.|+  ++|
T Consensus       115 v~~la~~ls~~l~~~------R~~~~~v~~iiaG~D~~gp~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~k--~dm  186 (247)
T PTZ00488        115 VAAASKILANIVWNY------KGMGLSMGTMICGWDKKGPGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFK--WDL  186 (247)
T ss_pred             HHHHHHHHHHHHHhc------CCCCeeEEEEEEEEeCCCCEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcCc--CCC
Confidence            999999999998544      5555  558999999989999999999999999999999999999999999999  699


Q ss_pred             CHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHHhhhhhhcc
Q psy1918         188 SLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEERRG  248 (251)
Q Consensus       188 s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~~~~~~~~~  248 (251)
                      |.+||++++++||+.+.+||. .++++++|++|+++| ++.++++||+++|+.+++++|..
T Consensus       187 s~eEai~l~~kal~~~~~Rd~-~sg~~~ei~iI~k~g-~~~l~~~ei~~~l~~~~~~~~~~  245 (247)
T PTZ00488        187 NDEEAQDLGRRAIYHATFRDA-YSGGAINLYHMQKDG-WKKISADDCFDLHQKYAAEKEIN  245 (247)
T ss_pred             CHHHHHHHHHHHHHHHHHhcc-ccCCCeEEEEEcCCc-cEECCHHHHHHHHHHHhhhcccC
Confidence            999999999999999999996 899999999999886 99999999999999999888764

>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type

Probab=100.00  E-value=1e-45  Score=314.47  Aligned_cols=203  Identities=16%  Similarity=0.222  Sum_probs=184.8

Q ss_pred             hchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccccccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcC-
Q psy1918          27 VEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHK-  105 (251)
Q Consensus        27 vEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~-  105 (251)
                      -|||++|+++|+|+|||+++||||||+|++.     +..+|||+|+||++|+++|+.+|++.+++.++.+++.|++.++ 
T Consensus        17 ~EYA~kav~~g~T~VGIk~kdgVVLaaek~~-----~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~~~~   91 (228)
T TIGR03691        17 AELARKGIARGRSVVVLTYADGILFVAENPS-----RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYSYDR   91 (228)
T ss_pred             HHHHHHHHHcCCcEEEEEeCCeEEEEEecCC-----CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCC
Confidence            4899999999999999999999999999962     4678999999999999999999999999999999999999998 


Q ss_pred             CCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC--CCCeEEEECCCCCeeeee-EEEEcCChHHHHHHHHHhhc
Q psy1918         106 DTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD--AGPHIYQTCPSSNYYDVK-AMAIGSRSQSARTYLEKRLA  182 (251)
Q Consensus       106 ~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~--~gp~ly~id~~G~~~~~~-~~a~G~g~~~a~~~L~~~~~  182 (251)
                      .+++++.+|+.+++.++.++ +++.|||+|++|++|||+  .||+||++||+|++.+++ ++|+|++++.++++||++|+
T Consensus        92 ~~~~v~~la~~~tq~~~~~~-~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~~Lek~y~  170 (228)
T TIGR03691        92 RDVTGRGLANAYAQTLGTIF-TEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTTEPIATALKESYR  170 (228)
T ss_pred             CCccHHHHHHHHHhhccccc-ccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCChHHHHHHHHHhcC
Confidence            68999999988877776666 556799999999999984  689999999999999976 89999999999999999998


Q ss_pred             CCCCCCHHHHHHHHHHHHHhhC--CCCCCCCCCeEEEEEEecCC---ceEEecHHHHHHHH
Q psy1918         183 DFPEASLEEIVKHGLRALRDTL--PNDSELTTKNVSIGLVGQNQ---KFKTLDERETGHYL  238 (251)
Q Consensus       183 ~~~~~s~~ea~~~~~~al~~~~--~~d~~~~~~~iei~ii~~~~---~~~~l~~~ei~~~l  238 (251)
                        ++|+++||++++++||+.++  +++. +++.++||++|++++   .|++|+++||+++|
T Consensus       171 --~~ms~eeai~la~~aL~~~~~~~r~~-~~~~~iEv~ii~k~~~~~~f~~l~~~ei~~~l  228 (228)
T TIGR03691       171 --DGLSLADALGLAVQALRAGGNGEKRE-LDAASLEVAVLDRSRPRRAFRRITGEALERLL  228 (228)
T ss_pred             --CCCCHHHHHHHHHHHHHHHhcccccc-CCccceEEEEEeCCCCccceEECCHHHHHhhC
Confidence              69999999999999999995  4553 789999999999653   49999999999875

Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.

>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type

Probab=100.00  E-value=1.4e-45  Score=312.59  Aligned_cols=205  Identities=20%  Similarity=0.220  Sum_probs=187.8

Q ss_pred             cCCcEEEeeeCCeEEEEEeccCccc-cc--cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHH
Q psy1918          36 QGSATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFR  112 (251)
Q Consensus        36 ~G~tvigi~~~dgVvla~d~~~~~~-l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~  112 (251)
                      +|+|+|||+++||||||+|++.+++ +.  ++.+|||+|++|++|++||..+|++.+.+++|.+++.|++.++++++++.
T Consensus         1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~   80 (219)
T TIGR03690         1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG   80 (219)
T ss_pred             CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence            4899999999999999999999984 43  47899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC--CCCeEEEECCCC-CeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCH
Q psy1918         113 LISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD--AGPHIYQTCPSS-NYYDVKAMAIGSRSQSARTYLEKRLADFPEASL  189 (251)
Q Consensus       113 la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~--~gp~ly~id~~G-~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~  189 (251)
                      ++++|++++|.++. ..+|||++++||||||+  ++|+||++||+| ++..++++|+|+|+..++++||++|+  ++||.
T Consensus        81 la~~ls~~~~~~~~-~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~--~~ms~  157 (219)
T TIGR03690        81 KANRLAAMVRGNLP-AAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYS--PDLDE  157 (219)
T ss_pred             HHHHHHHHHHhhhh-hccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCC--CCcCH
Confidence            99999999988774 45899999999999995  579999999999 57777999999999999999999998  69999


Q ss_pred             HHHHHHHHHHHHhhCCCCCCCCCCe-------EEEEEEecCCceEEecHHHHHHHHHHhhhhh
Q psy1918         190 EEIVKHGLRALRDTLPNDSELTTKN-------VSIGLVGQNQKFKTLDERETGHYLSLIEGEE  245 (251)
Q Consensus       190 ~ea~~~~~~al~~~~~~d~~~~~~~-------iei~ii~~~~~~~~l~~~ei~~~l~~~~~~~  245 (251)
                      +||++++++||+.+.+||. .+++.       ++|++|+++| |+.|+++||+.+++.+++.+
T Consensus       158 eeai~l~~~al~~~~~~d~-~s~~~~~~~~~~~ei~ii~~~g-~~~l~~~ei~~~~~~~~~~~  218 (219)
T TIGR03690       158 DDALRVAVEALYDAADDDS-ATGGPDLVRGIYPTVVVITADG-ARRVPESELEELARAIVESR  218 (219)
T ss_pred             HHHHHHHHHHHHHHHhccc-ccCCcccccccccEEEEEccCc-eEEcCHHHHHHHHHHHHhcc
Confidence            9999999999999999985 44543       3999998775 99999999999999988765

Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.

>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit

Probab=100.00  E-value=1.3e-44  Score=301.28  Aligned_cols=186  Identities=20%  Similarity=0.322  Sum_probs=175.2

Q ss_pred             CcEEEeeeCCeEEEEEeccCcccc-c--cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918          38 SATVGLKNKTHAVIIALKRAASEL-A--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI  114 (251)
Q Consensus        38 ~tvigi~~~dgVvla~d~~~~~~l-~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la  114 (251)
                      +|+|||+++||||||+|++.+++. .  ++.+|||+|+++++|++||..+|++.+.+++|.+++.|++.++++++++.++
T Consensus         2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la   81 (193)
T cd03758           2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA   81 (193)
T ss_pred             ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            689999999999999999998764 3  5789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHH
Q psy1918         115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIV  193 (251)
Q Consensus       115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~  193 (251)
                      +++++.+|.|+++.  |||++++||+|||+ .||+||++||+|++.+++++|+|+|+..++++||+.|+  |+||++||+
T Consensus        82 ~~l~~~~~~~~~~~--rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~--~~ms~eeai  157 (193)
T cd03758          82 NFTRRELAESLRSR--TPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYK--PDMTVEEAL  157 (193)
T ss_pred             HHHHHHHHHHhhcC--CCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccC--CCCCHHHHH
Confidence            99999999887653  89999999999996 78999999999999999999999999999999999998  799999999


Q ss_pred             HHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEe
Q psy1918         194 KHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTL  229 (251)
Q Consensus       194 ~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l  229 (251)
                      +++++||+.+.+||+ .++++++|++|+++| ++.+
T Consensus       158 ~l~~~a~~~~~~rd~-~~~~~i~i~ii~~~g-~~~~  191 (193)
T cd03758         158 ELMKKCIKELKKRFI-INLPNFTVKVVDKDG-IRDL  191 (193)
T ss_pred             HHHHHHHHHHHHhcc-ccCCceEEEEEcCCC-eEeC
Confidence            999999999999996 899999999999987 6653

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit

Probab=100.00  E-value=1.1e-44  Score=302.58  Aligned_cols=189  Identities=19%  Similarity=0.198  Sum_probs=175.0

Q ss_pred             cCCcEEEeeeCCeEEEEEeccCccc-cc--cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHH-HHhhhcCCCCCHH
Q psy1918          36 QGSATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECL-NYKYAHKDTLPVF  111 (251)
Q Consensus        36 ~G~tvigi~~~dgVvla~d~~~~~~-l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~-~~~~~~~~~i~~~  111 (251)
                      +|+|+|||+++||||||+|++.+++ +.  ++.+|||+|+++++|+++|+.+|++.+++++|.+++ .+++.++.+++++
T Consensus         1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~   80 (197)
T cd03760           1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK   80 (197)
T ss_pred             CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence            5899999999999999999999854 43  578999999999999999999999999999999987 4667899999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHH
Q psy1918         112 RLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLE  190 (251)
Q Consensus       112 ~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~  190 (251)
                      .+++++++.+  |+++++.|||++++|+||||+ +||+||++||.|++.+++++|+|+|+.+++++||+.|+++++||++
T Consensus        81 ~la~~i~~~~--y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~e  158 (197)
T cd03760          81 EIHSYLTRVL--YNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTEE  158 (197)
T ss_pred             HHHHHHHHHH--HHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCCHH
Confidence            9999999986  899988999999999999996 7899999999999999999999999999999999999833499999


Q ss_pred             HHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEE
Q psy1918         191 EIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKT  228 (251)
Q Consensus       191 ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~  228 (251)
                      ||++++++||+.+.+||. .++++++|++|+++| +++
T Consensus       159 ea~~l~~~~l~~~~~rd~-~~~~~~~i~ii~~~g-~~~  194 (197)
T cd03760         159 EARALIEECMKVLYYRDA-RSINKYQIAVVTKEG-VEI  194 (197)
T ss_pred             HHHHHHHHHHHHHHHhcc-ccCCceEEEEECCCC-EEe
Confidence            999999999999999996 799999999999986 554

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit

Probab=100.00  E-value=1.5e-44  Score=301.33  Aligned_cols=182  Identities=20%  Similarity=0.280  Sum_probs=172.0

Q ss_pred             cCCcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHH
Q psy1918          36 QGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFR  112 (251)
Q Consensus        36 ~G~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~  112 (251)
                      +|+|+|||+++||||||+|++.++++.   ++.+|||+|++|++|++||..+|++.+.+.+|.+++.|++.++++++++.
T Consensus         2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~   81 (195)
T cd03759           2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKT   81 (195)
T ss_pred             CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence            699999999999999999999999874   36799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeee-EEEEcCChHHHHHHHHHhhcCCCCCCHH
Q psy1918         113 LISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVK-AMAIGSRSQSARTYLEKRLADFPEASLE  190 (251)
Q Consensus       113 la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~-~~a~G~g~~~a~~~L~~~~~~~~~~s~~  190 (251)
                      +|++|++.+  |+++.  |||++++||||||+ +||+||++||+|++..++ ++|+|+|++.++++||+.|+  |+||++
T Consensus        82 la~~l~~~l--y~~r~--~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~--~~~s~~  155 (195)
T cd03759          82 FSSLISSLL--YEKRF--GPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWR--PDMEPD  155 (195)
T ss_pred             HHHHHHHHH--HHhcC--CCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccC--CCCCHH
Confidence            999999998  77763  79999999999995 569999999999998887 99999999999999999998  699999


Q ss_pred             HHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCC
Q psy1918         191 EIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQ  224 (251)
Q Consensus       191 ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~  224 (251)
                      ||++++++||+.+.+||. .++++++|++|+++|
T Consensus       156 ea~~l~~~~l~~~~~rd~-~~~~~~~i~ii~~~g  188 (195)
T cd03759         156 ELFETISQALLSAVDRDA-LSGWGAVVYIITKDK  188 (195)
T ss_pred             HHHHHHHHHHHHHHhhCc-ccCCceEEEEEcCCc
Confidence            999999999999999996 799999999999987

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit

Probab=100.00  E-value=3.2e-44  Score=297.71  Aligned_cols=184  Identities=21%  Similarity=0.300  Sum_probs=173.7

Q ss_pred             CcEEEeeeCCeEEEEEeccCcccc-c--cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918          38 SATVGLKNKTHAVIIALKRAASEL-A--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI  114 (251)
Q Consensus        38 ~tvigi~~~dgVvla~d~~~~~~l-~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la  114 (251)
                      +|+|||+++||||||+|++.+++. .  ++.+|||+|++|++|+++|+.+|++.+.+++|.+++.|++.++++++++.++
T Consensus         1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la   80 (188)
T cd03761           1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS   80 (188)
T ss_pred             CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence            589999999999999999999964 3  4789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHHH
Q psy1918         115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVK  194 (251)
Q Consensus       115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~  194 (251)
                      +++++.+|.|++    .||+++++|||||++||+||++||+|++.+++++|+|+|++.++++||+.|+  |+||.+||++
T Consensus        81 ~~ls~~l~~~~~----~~~~v~~li~G~D~~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~--~~~s~eea~~  154 (188)
T cd03761          81 KLLSNMLYQYKG----MGLSMGTMICGWDKTGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYR--YDLSVEEAYD  154 (188)
T ss_pred             HHHHHHHHhcCC----CCeEEEEEEEEEeCCCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCC--CCCCHHHHHH
Confidence            999999988754    3899999999999999999999999999999999999999999999999999  6999999999


Q ss_pred             HHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEe
Q psy1918         195 HGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTL  229 (251)
Q Consensus       195 ~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l  229 (251)
                      ++++||+.+.+||. .++++++|++|+++| ++.+
T Consensus       155 l~~~~l~~~~~rd~-~sg~~~~v~ii~~~g-~~~~  187 (188)
T cd03761         155 LARRAIYHATHRDA-YSGGNVNLYHVREDG-WRKI  187 (188)
T ss_pred             HHHHHHHHHHHhcc-cCCCCeEEEEEcCCc-eEEc
Confidence            99999999999996 899999999999886 6554

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit

Probab=100.00  E-value=1.6e-43  Score=298.70  Aligned_cols=186  Identities=22%  Similarity=0.314  Sum_probs=174.3

Q ss_pred             HhcCCcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCH
Q psy1918          34 VKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPV  110 (251)
Q Consensus        34 ~~~G~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~  110 (251)
                      +++|+|+|||+++||||||+|++.++++.   ++.+|||+|+++++||+||..+|++.+.+.+|.+++.|++.+|+++++
T Consensus         5 ~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~~   84 (212)
T cd03757           5 TDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMST   84 (212)
T ss_pred             cCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCCCH
Confidence            46899999999999999999999999873   478999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcC------
Q psy1918         111 FRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLAD------  183 (251)
Q Consensus       111 ~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~------  183 (251)
                      +.+++++++.+  |++|.  |||++++||||||+ ++|+||.+||.|++.+++++|+|+|+.+++++||+.|++      
T Consensus        85 ~~la~~ls~~l--y~~R~--~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~  160 (212)
T cd03757          85 EAIAQLLSTIL--YSRRF--FPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNNV  160 (212)
T ss_pred             HHHHHHHHHHH--HhhcC--CCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCcC
Confidence            99999999999  66553  79999999999996 469999999999999999999999999999999999851      


Q ss_pred             -CCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCC
Q psy1918         184 -FPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQ  224 (251)
Q Consensus       184 -~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~  224 (251)
                       .++||++||++++++||+.+.+||. .++++++|++|+++|
T Consensus       161 ~~~~ms~eea~~l~~~~l~~~~~rd~-~sg~~i~i~iit~~g  201 (212)
T cd03757         161 ERTPLSLEEAVSLVKDAFTSAAERDI-YTGDSLEIVIITKDG  201 (212)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhCc-ccCCCEEEEEEcCCC
Confidence             2699999999999999999999996 799999999999997

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit

Probab=100.00  E-value=3.2e-43  Score=290.92  Aligned_cols=181  Identities=29%  Similarity=0.447  Sum_probs=171.8

Q ss_pred             CCcEEEeeeCCeEEEEEeccCcccc-c--cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHH
Q psy1918          37 GSATVGLKNKTHAVIIALKRAASEL-A--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRL  113 (251)
Q Consensus        37 G~tvigi~~~dgVvla~d~~~~~~l-~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~l  113 (251)
                      |+|+|||+++||||||+|++.+++. .  ++.+|||+|+++++|++||..+|++.+.++++.+++.|+..++++++++.+
T Consensus         1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~   80 (185)
T TIGR03634         1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL   80 (185)
T ss_pred             CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence            7899999999999999999998653 2  578999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHH
Q psy1918         114 ISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIV  193 (251)
Q Consensus       114 a~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~  193 (251)
                      ++++++.+|.+    ..|||+++++|||||++||+||.+||.|++.+++++|+|+++..++++|++.|+  ++||++||+
T Consensus        81 a~~l~~~~~~~----~~rP~~v~~ivaG~d~~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~--~~~s~~ea~  154 (185)
T TIGR03634        81 ATLLSNILNSN----RFFPFIVQLLVGGVDEEGPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYR--EDMSVEEAK  154 (185)
T ss_pred             HHHHHHHHHhc----CCCCeEEEEEEEEEeCCCCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcCC--CCCCHHHHH
Confidence            99999999655    468999999999999999999999999999999999999999999999999998  699999999


Q ss_pred             HHHHHHHHhhCCCCCCCCCCeEEEEEEecCC
Q psy1918         194 KHGLRALRDTLPNDSELTTKNVSIGLVGQNQ  224 (251)
Q Consensus       194 ~~~~~al~~~~~~d~~~~~~~iei~ii~~~~  224 (251)
                      +++++||+.+.+||. .++++++|++|+++|
T Consensus       155 ~l~~~~l~~~~~r~~-~~~~~~~v~ii~~~g  184 (185)
T TIGR03634       155 KLAVRAIKSAIERDV-ASGNGIDVAVITKDG  184 (185)
T ss_pred             HHHHHHHHHHHHhcc-cCCCCEEEEEEcCCC
Confidence            999999999999996 799999999999886

This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.

>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit

Probab=100.00  E-value=1.1e-42  Score=288.78  Aligned_cols=184  Identities=22%  Similarity=0.271  Sum_probs=172.6

Q ss_pred             CcEEEeeeCCeEEEEEeccCcccc-c--cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918          38 SATVGLKNKTHAVIIALKRAASEL-A--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI  114 (251)
Q Consensus        38 ~tvigi~~~dgVvla~d~~~~~~l-~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la  114 (251)
                      +|+|||+++||||||+|++.+++. .  ++.+|||+|+++++|++||..+|++.+.+.++.+++.|+++++++++++.++
T Consensus         1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a   80 (189)
T cd03763           1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL   80 (189)
T ss_pred             CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            589999999999999999999974 2  4789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHHH
Q psy1918         115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVK  194 (251)
Q Consensus       115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~  194 (251)
                      +++++.++.|.     .||+|++||||||++||+||.+||.|++.+++++|+|+++..++++|+++|+  |+||++||++
T Consensus        81 ~~l~~~l~~~~-----~p~~v~~ivaG~d~~g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~--~~ls~~ea~~  153 (189)
T cd03763          81 TMLKQHLFRYQ-----GHIGAALVLGGVDYTGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYK--PDMTEEEAKK  153 (189)
T ss_pred             HHHHHHHHHcC-----CccceeEEEEeEcCCCCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcC--CCCCHHHHHH
Confidence            99999986552     3999999999999889999999999999999999999999999999999998  7999999999


Q ss_pred             HHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEec
Q psy1918         195 HGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLD  230 (251)
Q Consensus       195 ~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~  230 (251)
                      ++++||+.+.+||. .++++++|++|+++| +++..
T Consensus       154 l~~~~l~~~~~rd~-~~~~~~~v~ii~~~g-~~~~~  187 (189)
T cd03763         154 LVCEAIEAGIFNDL-GSGSNVDLCVITKDG-VEYLR  187 (189)
T ss_pred             HHHHHHHHHHHhcC-cCCCceEEEEEcCCc-EEEec
Confidence            99999999999996 789999999999987 66554

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit

Probab=100.00  E-value=1.5e-42  Score=287.63  Aligned_cols=185  Identities=29%  Similarity=0.455  Sum_probs=174.1

Q ss_pred             CcEEEeeeCCeEEEEEeccCcccc-c--cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918          38 SATVGLKNKTHAVIIALKRAASEL-A--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI  114 (251)
Q Consensus        38 ~tvigi~~~dgVvla~d~~~~~~l-~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la  114 (251)
                      +|+|||+++||||||+|++.+++. .  ++.+||++|+++++++++|..+|++.+.+.++.+++.|++.++++++++.++
T Consensus         1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~   80 (188)
T cd03764           1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA   80 (188)
T ss_pred             CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence            589999999999999999999864 3  5789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHHH
Q psy1918         115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVK  194 (251)
Q Consensus       115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~  194 (251)
                      +++++.++.+    ..|||++++||||||++||+||.+||.|++.+++++|+|+|++.++++|++.|+  ++|+++||++
T Consensus        81 ~~i~~~~~~~----~~~P~~~~~lvaG~d~~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~--~~~~~~ea~~  154 (188)
T cd03764          81 TLLSNILNSS----KYFPYIVQLLIGGVDEEGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYK--EDMTVEEAKK  154 (188)
T ss_pred             HHHHHHHHhc----CCCCcEEEEEEEEEeCCCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcCC--CCCCHHHHHH
Confidence            9999999654    358999999999999888999999999999999999999999999999999998  6999999999


Q ss_pred             HHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEec
Q psy1918         195 HGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLD  230 (251)
Q Consensus       195 ~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~  230 (251)
                      ++++||+.+.+||. .++++++|++|+++| +++|+
T Consensus       155 l~~~~l~~~~~rd~-~~~~~i~i~iv~~~g-~~~~~  188 (188)
T cd03764         155 LAIRAIKSAIERDS-ASGDGIDVVVITKDG-YKELE  188 (188)
T ss_pred             HHHHHHHHHHhhcC-CCCCcEEEEEECCCC-eEeCC
Confidence            99999999999996 799999999999987 88763

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit

Probab=100.00  E-value=1e-41  Score=282.56  Aligned_cols=179  Identities=18%  Similarity=0.206  Sum_probs=169.3

Q ss_pred             CcEEEeeeCCeEEEEEeccCcccc-c--cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918          38 SATVGLKNKTHAVIIALKRAASEL-A--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI  114 (251)
Q Consensus        38 ~tvigi~~~dgVvla~d~~~~~~l-~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la  114 (251)
                      +|+|||+++||||||+|++.+++. .  ++.+|||+|+++++|++||..+|++.+.+.++.+++.|++.++++++++.++
T Consensus         1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a   80 (188)
T cd03762           1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA   80 (188)
T ss_pred             CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence            589999999999999999999964 2  4789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHH
Q psy1918         115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIV  193 (251)
Q Consensus       115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~  193 (251)
                      +++++.++.++     |||++++||||||+ +||+||.+||.|++.+++++++|+++..++++|++.|+  ++|+++||+
T Consensus        81 ~~l~~~~~~~~-----~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~--~~~s~~ea~  153 (188)
T cd03762          81 SLFKNLCYNYK-----EMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYK--PGMTLEECI  153 (188)
T ss_pred             HHHHHHHHhcc-----ccceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcCC--CCCCHHHHH
Confidence            99999986553     69999999999996 78999999999999999999999999999999999998  699999999


Q ss_pred             HHHHHHHHhhCCCCCCCCCCeEEEEEEecCC
Q psy1918         194 KHGLRALRDTLPNDSELTTKNVSIGLVGQNQ  224 (251)
Q Consensus       194 ~~~~~al~~~~~~d~~~~~~~iei~ii~~~~  224 (251)
                      +++++||+.+.+||+ .++++++|++|+++|
T Consensus       154 ~l~~~al~~~~~rd~-~~~~~~~i~~i~~~g  183 (188)
T cd03762         154 KFVKNALSLAMSRDG-SSGGVIRLVIITKDG  183 (188)
T ss_pred             HHHHHHHHHHHHhcc-ccCCCEEEEEECCCC
Confidence            999999999999996 799999999999987

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit

Probab=100.00  E-value=9.1e-42  Score=290.80  Aligned_cols=182  Identities=16%  Similarity=0.289  Sum_probs=167.6

Q ss_pred             cEEEeeeCCeEEEEEeccCccccc--cccCceEEEc----CcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCC-CCCHH
Q psy1918          39 ATVGLKNKTHAVIIALKRAASELA--AHQKKIIVID----DHMGLSFAGLTADARILARFMRMECLNYKYAHKD-TLPVF  111 (251)
Q Consensus        39 tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~----~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~-~i~~~  111 (251)
                      =+|||+++||||||+|++.++++.  ++.+|||+|+    +|++|+.||+.+|++.+++++|.+++.|++.+|+ +++++
T Consensus         2 ~~vGIk~kdGVVLaadkr~~~~l~~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v~   81 (236)
T cd03765           2 YCLGIKLDAGLVFASDSRTNAGVDNISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPTMF   81 (236)
T ss_pred             eEEEEEeCCeEEEEEccCccCCCccccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCCHH
Confidence            479999999999999999998864  4689999998    8999999999999999999999999999999999 89999


Q ss_pred             HHHHHHHHHHH-HhhhcCC-----CCcceeeeeEEEEe-CCCCeEEEECCCCCeeee----eEEEEcCChHHHHHHHHHh
Q psy1918         112 RLISIVGNKMQ-VCTQRYD-----KRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDV----KAMAIGSRSQSARTYLEKR  180 (251)
Q Consensus       112 ~la~~l~~~~~-~yt~~~~-----~rP~~v~~iv~G~d-~~gp~ly~id~~G~~~~~----~~~a~G~g~~~a~~~L~~~  180 (251)
                      .+|+++++.++ .++++.+     .|||+|++||+||| ++||+||++||+|++.++    +++|+|. +..++++||++
T Consensus        82 ~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Lek~  160 (236)
T cd03765          82 DAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILDRV  160 (236)
T ss_pred             HHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHHHh
Confidence            99999999854 4555554     38999999999998 578999999999999999    4689996 79999999999


Q ss_pred             hcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCC
Q psy1918         181 LADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQ  224 (251)
Q Consensus       181 ~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~  224 (251)
                      |+  ++||++||++++++||..++.||. .++++|+|++|+++|
T Consensus       161 yk--~~ms~eeai~la~~al~~a~~rd~-~sg~~iev~vI~k~G  201 (236)
T cd03765         161 IT--PDTSLEDAAKCALVSMDSTMRSNL-SVGPPLDLLVYERDS  201 (236)
T ss_pred             cC--CCCCHHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEECCC
Confidence            99  699999999999999999999996 899999999999997

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins

Probab=100.00  E-value=2.4e-41  Score=280.12  Aligned_cols=184  Identities=37%  Similarity=0.609  Sum_probs=174.3

Q ss_pred             HhcCCcEEEeeeCCeEEEEEeccCccc--c-ccc-cCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q psy1918          34 VKQGSATVGLKNKTHAVIIALKRAASE--L-AAH-QKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLP  109 (251)
Q Consensus        34 ~~~G~tvigi~~~dgVvla~d~~~~~~--l-~~~-~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~  109 (251)
                      +++|+|+|||+++||||||+|++.+.+  + .++ .+|||+|++++++++||..+|++.+.++++.++..|++.++.+++
T Consensus         1 v~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~   80 (190)
T PF00227_consen    1 VNNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPIS   80 (190)
T ss_dssp             HHTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTC
T ss_pred             CCCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCcccc
Confidence            578999999999999999999999955  3 234 699999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCC-CeEEEECCCCCeeee-eEEEEcCChHHHHHHHHHhhcCCCCC
Q psy1918         110 VFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAG-PHIYQTCPSSNYYDV-KAMAIGSRSQSARTYLEKRLADFPEA  187 (251)
Q Consensus       110 ~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~g-p~ly~id~~G~~~~~-~~~a~G~g~~~a~~~L~~~~~~~~~~  187 (251)
                      ++.+++.+++.++.++++.++||+++++++||||+++ |+||.+||.|++.++ +++|+|+|++.++++|++.|+  ++|
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~--~~~  158 (190)
T PF00227_consen   81 PEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYK--PDL  158 (190)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHT--TTS
T ss_pred             chhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeeccccccccccccccchhcchhhhHHHHhhcc--CCC
Confidence            9999999999999999999999999999999999766 999999999999999 699999999999999999997  799


Q ss_pred             CHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEE
Q psy1918         188 SLEEIVKHGLRALRDTLPNDSELTTKNVSIGLV  220 (251)
Q Consensus       188 s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii  220 (251)
                      +++||++++++||+.+.++|. .++++++|++|
T Consensus       159 ~~~ea~~~~~~~l~~~~~~d~-~~~~~~~v~vi  190 (190)
T PF00227_consen  159 SLEEAIELALKALKEAIDRDI-LSGDNIEVAVI  190 (190)
T ss_dssp             SHHHHHHHHHHHHHHHHHHBT-TSTSEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHHHhhCC-ccCCeEEEEEC
Confidence            999999999999999999995 89999999987

They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....

>cd01912 proteasome_beta proteasome beta subunit

Probab=100.00  E-value=7.6e-41  Score=277.37  Aligned_cols=182  Identities=26%  Similarity=0.387  Sum_probs=172.0

Q ss_pred             CcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918          38 SATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI  114 (251)
Q Consensus        38 ~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la  114 (251)
                      +|+|||+++||||||+|++.++++.   +..+|||+|++++++++||+.+|++.+.++++.++..|++.++++++++.++
T Consensus         1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~   80 (189)
T cd01912           1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA   80 (189)
T ss_pred             CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            6899999999999999999999863   5789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHH
Q psy1918         115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIV  193 (251)
Q Consensus       115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~  193 (251)
                      +++++.++.+++    |||++++||||+|+ ++|+||.+||.|++.+++++|+|++++.++++|++.|+  |+|+++||+
T Consensus        81 ~~l~~~~~~~~~----~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~--~~~s~~ea~  154 (189)
T cd01912          81 NLLSNILYSYRG----FPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYK--PDMTLEEAV  154 (189)
T ss_pred             HHHHHHHHhcCC----CCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhccC--CCCCHHHHH
Confidence            999999966554    79999999999997 78999999999999999999999999999999999999  699999999


Q ss_pred             HHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceE
Q psy1918         194 KHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFK  227 (251)
Q Consensus       194 ~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~  227 (251)
                      +++++||+.+.+||. .++++++|++|+++| ++
T Consensus       155 ~~~~~~l~~~~~~d~-~~~~~~~v~vi~~~g-~~  186 (189)
T cd01912         155 ELVKKAIDSAIERDL-SSGGGVDVAVITKDG-VE  186 (189)
T ss_pred             HHHHHHHHHHHHhcC-ccCCcEEEEEECCCC-EE
Confidence            999999999999996 789999999999987 44

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd01906 proteasome_protease_HslV proteasome_protease_HslV

Probab=100.00  E-value=8.2e-40  Score=269.19  Aligned_cols=178  Identities=40%  Similarity=0.607  Sum_probs=169.5

Q ss_pred             CcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918          38 SATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI  114 (251)
Q Consensus        38 ~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la  114 (251)
                      +|+|||+++||||||+|++.++++.   ++.+|||+|+++++|+++|..+|++.+.+.+++++..|++.++++++++.++
T Consensus         1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~   80 (182)
T cd01906           1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA   80 (182)
T ss_pred             CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            6899999999999999999998864   5789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHH
Q psy1918         115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIV  193 (251)
Q Consensus       115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~  193 (251)
                      +.+++.++.++++  +|||++++++||+|+ +||+||.+||.|++.+++++|+|+++..++++|++.|+  ++||++||+
T Consensus        81 ~~l~~~~~~~~~~--~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~--~~~s~~ea~  156 (182)
T cd01906          81 KLLANLLYEYTQS--LRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYK--PDMTLEEAI  156 (182)
T ss_pred             HHHHHHHHHhCCC--ccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHcc--CCCCHHHHH
Confidence            9999999999876  799999999999997 78999999999999999999999999999999999998  699999999


Q ss_pred             HHHHHHHHhhCCCCCCCCCCeEEEEEE
Q psy1918         194 KHGLRALRDTLPNDSELTTKNVSIGLV  220 (251)
Q Consensus       194 ~~~~~al~~~~~~d~~~~~~~iei~ii  220 (251)
                      +++++||+.+.++|. .++.+++|++|
T Consensus       157 ~l~~~~l~~~~~~~~-~~~~~~~i~ii  182 (182)
T cd01906         157 ELALKALKSALERDL-YSGGNIEVAVI  182 (182)
T ss_pred             HHHHHHHHHHHcccC-CCCCCEEEEEC
Confidence            999999999999985 68889999875

This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo

>KOG0175|consensus

Probab=100.00  E-value=2.1e-37  Score=256.97  Aligned_cols=206  Identities=19%  Similarity=0.234  Sum_probs=191.8

Q ss_pred             HhcCCcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCH
Q psy1918          34 VKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPV  110 (251)
Q Consensus        34 ~~~G~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~  110 (251)
                      ..+|+|++|++++.|||+|+|+|++.+.+   ...+||++|+++++-+.+|-.+||+.+.+.+.++|+.|++++++.|+|
T Consensus        68 ~~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSV  147 (285)
T KOG0175|consen   68 FAHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISV  147 (285)
T ss_pred             ecCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceeh
Confidence            36899999999999999999999999864   578999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHH
Q psy1918         111 FRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLE  190 (251)
Q Consensus       111 ~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~  190 (251)
                      +..+++|++++.+|.-   + -+.+..+|||||+.||.||.||..|+..+.+-.++|+|+.+|.++|+..|+  ++|+.+
T Consensus       148 saASKllsN~~y~YkG---m-GLsmGtMi~G~Dk~GP~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr--~dls~e  221 (285)
T KOG0175|consen  148 SAASKLLSNMVYQYKG---M-GLSMGTMIAGWDKKGPGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGYR--YDLSDE  221 (285)
T ss_pred             HHHHHHHHHHHhhccC---c-chhheeeEeeccCCCCceEEEcCCCCEecCceEeecCCCceeEEeeccCCC--CCCCHH
Confidence            9999999999966642   2 467899999999999999999999999999999999999999999999999  799999


Q ss_pred             HHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHHhhhhhhc
Q psy1918         191 EIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEERR  247 (251)
Q Consensus       191 ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~~~~~~~~  247 (251)
                      ||.+++++|+..+..||. ++++.+.++.|+++| |.++++.++..++..+.+..+.
T Consensus       222 EA~~L~rrAI~hAThRDa-ySGG~vnlyHv~edG-W~~v~~~Dv~~L~~~~~e~~~~  276 (285)
T KOG0175|consen  222 EAYDLARRAIYHATHRDA-YSGGVVNLYHVKEDG-WVKVSNTDVSELHYHYYEVAPP  276 (285)
T ss_pred             HHHHHHHHHHHHHHhccc-ccCceEEEEEECCcc-ceecCCccHHHHHHHHHHhcCc
Confidence            999999999999999996 999999999999997 9999999999997766655443

>KOG0185|consensus

Probab=100.00  E-value=2.5e-36  Score=247.69  Aligned_cols=222  Identities=16%  Similarity=0.180  Sum_probs=195.8

Q ss_pred             ceeecCCCcch------hhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHH
Q psy1918          15 VTVWSPQGRLH------QVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTAD   85 (251)
Q Consensus        15 ~t~fsp~G~l~------QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D   85 (251)
                      +++|.|.|.+.      .+...+.++-+|++|||+|++||||+|+|+..+++..   .+.+|||+++||+++|+||..+|
T Consensus        13 ~~~f~~~~~~m~~a~~~~~qrt~~p~vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD   92 (256)
T KOG0185|consen   13 PGTFYPSGSLMENAGDYPIQRTLNPIVTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISD   92 (256)
T ss_pred             CCcCcCccchhhhccCCCcccccCceeccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHH
Confidence            45677776642      2223345567899999999999999999999999853   68999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh-hhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCC-CCeEEEECCCCCeeeeeE
Q psy1918          86 ARILARFMRMECLNYK-YAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA-GPHIYQTCPSSNYYDVKA  163 (251)
Q Consensus        86 ~~~l~~~l~~~~~~~~-~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~-gp~ly~id~~G~~~~~~~  163 (251)
                      .|.+.+.|.....+.. +..|+.+.|+.++++|.+.+  |.+|+.+.|++..++|||+|++ .|.|..+|-.|..++.+.
T Consensus        93 ~Q~i~r~L~~l~iedn~~~Dg~~l~Pk~ih~yltrvl--Y~rRsKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~~~~  170 (256)
T KOG0185|consen   93 FQYIQRVLEQLVIEDNRLDDGQSLGPKAIHSYLTRVL--YARRSKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYESPV  170 (256)
T ss_pred             HHHHHHHHHHHHhcccccccccccChHHHHHHHHHHH--HHhhhccCchhhheeEeeecCCCCeeEEEEeeccccccCch
Confidence            9999999998877754 55668999999999999999  9999999999999999999984 499999999999999999


Q ss_pred             EEEcCChHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHH
Q psy1918         164 MAIGSRSQSARTYLEKRLA-DFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSL  240 (251)
Q Consensus       164 ~a~G~g~~~a~~~L~~~~~-~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~  240 (251)
                      .|+|.|...|+++|++.|+ +.++++.+||..++.+||+..++||+ .+.++|++++|+++| +.+-.|..|+..+.-
T Consensus       171 vATGfg~hLa~P~lR~~~~~k~~~~s~eeA~~li~~cMrVL~YRD~-ra~n~fqva~v~~eG-v~i~~p~qv~~~W~f  246 (256)
T KOG0185|consen  171 VATGFGAHLALPLLRDEWEKKGEDLSREEAEALIEKCMRVLYYRDA-RASNEFQVATVDEEG-VTISKPYQVKTNWDF  246 (256)
T ss_pred             hhhhhHHHhhhHHHHHhhhccchhhHHHHHHHHHHHHHHHHhcccc-ccccceEEEEEcccc-eEecCceeeeecchh
Confidence            9999999999999999997 44789999999999999999999997 688899999999986 888777777665543

>KOG0179|consensus

Probab=100.00  E-value=2.1e-35  Score=238.57  Aligned_cols=187  Identities=22%  Similarity=0.358  Sum_probs=173.6

Q ss_pred             HhcCCcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCH
Q psy1918          34 VKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPV  110 (251)
Q Consensus        34 ~~~G~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~  110 (251)
                      ..+|+|+|||++.|++|+|+|+|.+++..   ++++|||+++|+++++.||.++|+..|...++...+.|+..++..|++
T Consensus        26 ~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~ms~  105 (235)
T KOG0179|consen   26 EDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNKKMSI  105 (235)
T ss_pred             ccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhcccccccH
Confidence            46899999999999999999999999863   689999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCC-CeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcC------
Q psy1918         111 FRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAG-PHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLAD------  183 (251)
Q Consensus       111 ~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~g-p~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~------  183 (251)
                      ..+|++|+..+  |.+|.  .||.+..+|+|+|+.| |.+|+.||.|++.+..+.|.|+++.+++++|+.....      
T Consensus       106 ~s~A~lls~~L--Y~kRF--FPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLDnQi~~kn~~~e  181 (235)
T KOG0179|consen  106 HSAAQLLSTIL--YSKRF--FPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLDNQIGHKNQNLE  181 (235)
T ss_pred             HHHHHHHHHHH--hhccc--ccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcchhhhhhhhhhhccCcCcccc
Confidence            99999999999  87765  6999999999999855 9999999999999999999999999999999975421      


Q ss_pred             ---CCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCc
Q psy1918         184 ---FPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQK  225 (251)
Q Consensus       184 ---~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~  225 (251)
                         .+.+++|+|+.++.+++..+.+||. ..+++++|+|++++|.
T Consensus       182 ~~~~~~Ls~e~ai~lv~d~F~SAaERdI-~tGD~l~i~I~tk~gV  225 (235)
T KOG0179|consen  182 NAERTPLSLERAIRLVKDAFTSAAERDI-YTGDKLEICIITKDGV  225 (235)
T ss_pred             cCcccccCHHHHHHHHHHHhhhhhhccc-ccCCcEEEEEEecCCE
Confidence               2467899999999999999999996 8999999999999984

>KOG0177|consensus

Probab=100.00  E-value=2.6e-34  Score=229.04  Aligned_cols=186  Identities=19%  Similarity=0.305  Sum_probs=173.2

Q ss_pred             cEEEeeeCCeEEEEEeccCcccc---ccccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHH
Q psy1918          39 ATVGLKNKTHAVIIALKRAASEL---AAHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLIS  115 (251)
Q Consensus        39 tvigi~~~dgVvla~d~~~~~~l---~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la~  115 (251)
                      +++||++.|+|++|+|+....+.   .++++|++.|++++.|+++|..+|+-++.+++++.++.|+.++|.++||+.+|+
T Consensus         3 ~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aah   82 (200)
T KOG0177|consen    3 TLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAAH   82 (200)
T ss_pred             eEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHHH
Confidence            68999999999999999988875   378999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHHH
Q psy1918         116 IVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVK  194 (251)
Q Consensus       116 ~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~  194 (251)
                      ++++.++++.+.  .+||-|++++||+|+ .||.||++|..|+..+.++++.|.++.++.++|++.|+  |+||.+||++
T Consensus        83 FtR~~La~~LRs--r~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~--pdmt~eea~~  158 (200)
T KOG0177|consen   83 FTRRELAESLRS--RTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYK--PDMTIEEALD  158 (200)
T ss_pred             HHHHHHHHHHhc--CCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhC--CCCCHHHHHH
Confidence            999999999874  379999999999996 67999999999999999999999999999999999999  7999999999


Q ss_pred             HHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEec
Q psy1918         195 HGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLD  230 (251)
Q Consensus       195 ~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~  230 (251)
                      +..+|+.+.-+|= .....+|.+.+|+++| .+.++
T Consensus       159 lmkKCv~El~kRl-vin~~~f~v~IVdkdG-ir~~~  192 (200)
T KOG0177|consen  159 LMKKCVLELKKRL-VINLPGFIVKIVDKDG-IRKLD  192 (200)
T ss_pred             HHHHHHHHHHHhc-ccCCCCcEEEEEcCCC-ceecc
Confidence            9999998887775 4678899999999997 66553

>KOG0173|consensus

Probab=100.00  E-value=2.8e-34  Score=237.87  Aligned_cols=184  Identities=24%  Similarity=0.304  Sum_probs=173.2

Q ss_pred             HHhcCCcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q psy1918          33 AVKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLP  109 (251)
Q Consensus        33 a~~~G~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~  109 (251)
                      +.+.|+|++|+.++||||+++|+|.+.+..   .+.+||+.|.++|+||.+|-.+|...+.+.+..+...|.+..++++.
T Consensus        33 ~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R~~r  112 (271)
T KOG0173|consen   33 ATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGRKPR  112 (271)
T ss_pred             ccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccCCCCc
Confidence            456799999999999999999999999864   58899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCH
Q psy1918         110 VFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASL  189 (251)
Q Consensus       110 ~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~  189 (251)
                      +-....++.+.+..|.-     -.++.+|++|+|..|||||++.|.|+.....|.+.|+|+..|+.+||..|+  |+|++
T Consensus       113 Vv~A~~mlkQ~LFrYqG-----~IgA~LiiGGvD~TGpHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~k--~dlt~  185 (271)
T KOG0173|consen  113 VVTALRMLKQHLFRYQG-----HIGAALILGGVDPTGPHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRWK--PDLTK  185 (271)
T ss_pred             eeeHHHHHHHHHHHhcC-----cccceeEEccccCCCCceEEEcCCCCcCccceeeeccchHHHHHHHHHhcC--cccCH
Confidence            99999999999977753     468999999999999999999999999999999999999999999999999  79999


Q ss_pred             HHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCC
Q psy1918         190 EEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQ  224 (251)
Q Consensus       190 ~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~  224 (251)
                      |||++++.+|+...+.+|. .|+.++++|+|++.+
T Consensus       186 eea~~Lv~eAi~AGi~nDL-gSGsnvdlcVI~~~~  219 (271)
T KOG0173|consen  186 EEAIKLVCEAIAAGIFNDL-GSGSNVDLCVITKKG  219 (271)
T ss_pred             HHHHHHHHHHHHhhhcccc-CCCCceeEEEEeCCC
Confidence            9999999999999999996 799999999999654

>KOG0174|consensus

Probab=100.00  E-value=5.9e-34  Score=227.64  Aligned_cols=198  Identities=18%  Similarity=0.223  Sum_probs=177.4

Q ss_pred             HHhcCCcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q psy1918          33 AVKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLP  109 (251)
Q Consensus        33 a~~~G~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~  109 (251)
                      .+..|+|++|+++++||||++|+|.+.+.+   +..+|+.+|.|+|+||-||..+|.|.+.+.++.++..|..+++.+++
T Consensus        15 evstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~   94 (224)
T KOG0174|consen   15 EVSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPL   94 (224)
T ss_pred             ccccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCch
Confidence            467899999999999999999999999964   57899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCC
Q psy1918         110 VFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEAS  188 (251)
Q Consensus       110 ~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s  188 (251)
                      +...|+.+++++.+|  +.   -+.+++||||||+ .|.++|.+---|+..+-.+..-|+||.++.++++.+||  |+|+
T Consensus        95 v~~aA~l~r~~~Y~~--re---~L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~r--~nMt  167 (224)
T KOG0174|consen   95 VHTAASLFREICYNY--RE---MLSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANWR--PNMT  167 (224)
T ss_pred             HHHHHHHHHHHHHhC--HH---hhhcceEEeecccccCceEEEeecCceEeecceeeccCCceeeeeeehhhcC--CCCC
Confidence            999999999999444  32   4789999999996 68999999555556666777778999999999999999  7999


Q ss_pred             HHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCc-eEEecHHHHHHHH
Q psy1918         189 LEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQK-FKTLDERETGHYL  238 (251)
Q Consensus       189 ~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~-~~~l~~~ei~~~l  238 (251)
                      +||++....+|+..++.||- .+++.|.+.+|+++|. .+.+.++++.++.
T Consensus       168 ~EE~~~fvk~Av~lAi~rDG-sSGGviR~~~I~~~Gver~~~~~d~~~~~~  217 (224)
T KOG0174|consen  168 LEECVRFVKNAVSLAIERDG-SSGGVIRLVIINKAGVERRFFPGDKLGQFA  217 (224)
T ss_pred             HHHHHHHHHHHHHHHHhccC-CCCCEEEEEEEccCCceEEEecCCcccccc
Confidence            99999999999999999995 7999999999999984 5667777776654

>KOG0180|consensus

Probab=99.97  E-value=1.2e-30  Score=205.01  Aligned_cols=183  Identities=20%  Similarity=0.272  Sum_probs=172.5

Q ss_pred             hcCCcEEEeeeCCeEEEEEeccCcccc---ccccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHH
Q psy1918          35 KQGSATVGLKNKTHAVIIALKRAASEL---AAHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVF  111 (251)
Q Consensus        35 ~~G~tvigi~~~dgVvla~d~~~~~~l---~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~  111 (251)
                      -+|+++||++++|+|.||+|.|....+   ..+.+|||+++|++++|.+|+..|++.+.++++...+.|+++.++.|.|+
T Consensus         6 ynGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~   85 (204)
T KOG0180|consen    6 YNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPE   85 (204)
T ss_pred             ecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcH
Confidence            379999999999999999999987764   36899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeee-eEEEEcCChHHHHHHHHHhhcCCCCCCH
Q psy1918         112 RLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDV-KAMAIGSRSQSARTYLEKRLADFPEASL  189 (251)
Q Consensus       112 ~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~-~~~a~G~g~~~a~~~L~~~~~~~~~~s~  189 (251)
                      .+++.++..+  |.+|.+  ||.+..+|||+|+ +.|+|..+|..|..... ++.+.|.+++...+.+|..|+  |||..
T Consensus        86 ~~s~mvS~~l--YekRfg--pYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~--pnmep  159 (204)
T KOG0180|consen   86 TFSSMVSSLL--YEKRFG--PYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYE--PNMEP  159 (204)
T ss_pred             HHHHHHHHHH--HHhhcC--CcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcC--CCCCH
Confidence            9999999999  888875  9999999999987 45999999999999854 899999999999999999999  89999


Q ss_pred             HHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCC
Q psy1918         190 EEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQ  224 (251)
Q Consensus       190 ~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~  224 (251)
                      |++.+.+.+||.++.+||+ ++|+...+++|+++.
T Consensus       160 d~LFetisQa~Lna~DRDa-lSGwGa~vyiI~kdk  193 (204)
T KOG0180|consen  160 DELFETISQALLNAVDRDA-LSGWGAVVYIITKDK  193 (204)
T ss_pred             HHHHHHHHHHHHhHhhhhh-hccCCeEEEEEccch
Confidence            9999999999999999996 899999999999986

>PRK05456 ATP-dependent protease subunit HslV; Provisional

Probab=99.97  E-value=9.2e-30  Score=207.24  Aligned_cols=165  Identities=18%  Similarity=0.143  Sum_probs=140.3

Q ss_pred             CCcEEEeeeCCeEEEEEeccCcccc---ccccCceEEE-cCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHH
Q psy1918          37 GSATVGLKNKTHAVIIALKRAASEL---AAHQKKIIVI-DDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFR  112 (251)
Q Consensus        37 G~tvigi~~~dgVvla~d~~~~~~l---~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~  112 (251)
                      |+|+|||+++||||||+|+|++.+.   .++.+||++| +++++||+||..+|++.+.+.++.+++.|+.  +  . ++.
T Consensus         1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~--~--~-~~~   75 (172)
T PRK05456          1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQG--N--L-LRA   75 (172)
T ss_pred             CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccC--c--c-HHH
Confidence            6899999999999999999999885   3688999999 9999999999999999999999999999883  2  2 466


Q ss_pred             HHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeee--eEEEEcCChHHHHHHHHHhhcCCCCCCHH
Q psy1918         113 LISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDV--KAMAIGSRSQSARTYLEKRLADFPEASLE  190 (251)
Q Consensus       113 la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~--~~~a~G~g~~~a~~~L~~~~~~~~~~s~~  190 (251)
                      +++.+..+. .+   ...+|+.+++|++  |.  |+||.+||.|+..+.  +++|+|+|+.++.++|++.|+. |+|   
T Consensus        76 ~a~l~~~l~-~~---~~~~~l~~~~lv~--d~--~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~-~~m---  143 (172)
T PRK05456         76 AVELAKDWR-TD---RYLRRLEAMLIVA--DK--EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLEN-TDL---  143 (172)
T ss_pred             HHHHHHHHH-hc---cCCCccEEEEEEE--cC--CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhc-CCC---
Confidence            665543321 11   1235888999994  33  799999999999766  7999999999999999999983 488   


Q ss_pred             HHHHHHHHHHHhhCCCCCCCCCCeEEEEE
Q psy1918         191 EIVKHGLRALRDTLPNDSELTTKNVSIGL  219 (251)
Q Consensus       191 ea~~~~~~al~~~~~~d~~~~~~~iei~i  219 (251)
                      ||++++++|++.+.+||. .+++++++-.
T Consensus       144 eA~~la~kai~~A~~Rd~-~sg~~i~v~~  171 (172)
T PRK05456        144 SAEEIAEKALKIAADICI-YTNHNITIEE  171 (172)
T ss_pred             CHHHHHHHHHHHHHHhCe-eCCCcEEEEE
Confidence            999999999999999996 8999988754

>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid

Probab=99.97  E-value=1e-28  Score=197.58  Aligned_cols=159  Identities=38%  Similarity=0.520  Sum_probs=151.8

Q ss_pred             CcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918          38 SATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI  114 (251)
Q Consensus        38 ~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la  114 (251)
                      +|+|||+++||||+|+|++.+.++.   ....|++.++++++++++|..+|++.+.++++.++..|++.++.++++..++
T Consensus         1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (164)
T cd01901           1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA   80 (164)
T ss_pred             CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence            5899999999999999999998874   4789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeee-eEEEEcCChHHHHHHHHHhhcCCCCCCHHHHH
Q psy1918         115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDV-KAMAIGSRSQSARTYLEKRLADFPEASLEEIV  193 (251)
Q Consensus       115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~-~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~  193 (251)
                      +.+++.++.+++   .||++++++++|+|+++|+||.+||.|++.+. .++++|.++..+.++|++.|+  ++++.+|++
T Consensus        81 ~~~~~~~~~~~~---~~p~~~~~iiag~~~~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~--~~~~~~~~~  155 (164)
T cd01901          81 KELAKLLQVYTQ---GRPFGVNLIVAGVDEGGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYK--PDMTLEEAV  155 (164)
T ss_pred             HHHHHHHHHhcC---CCCcceEEEEEEEcCCCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhc--CCCCHHHHH
Confidence            999999988877   68999999999999888999999999999999 999999999999999999998  689999999


Q ss_pred             HHHHHHHH
Q psy1918         194 KHGLRALR  201 (251)
Q Consensus       194 ~~~~~al~  201 (251)
                      +++.+||+
T Consensus       156 ~~~~~~l~  163 (164)
T cd01901         156 ELALKALK  163 (164)
T ss_pred             HHHHHHHh
Confidence            99999985

N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t

>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome

Probab=99.97  E-value=4e-29  Score=202.26  Aligned_cols=162  Identities=17%  Similarity=0.107  Sum_probs=136.7

Q ss_pred             CcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcC-cEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHH
Q psy1918          38 SATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDD-HMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRL  113 (251)
Q Consensus        38 ~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~l  113 (251)
                      +|+|||+++||||||+|+|++.+..   ++.+||++|++ |++||++|..+|++.|.++++.+++.|+.+.++     .+
T Consensus         1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~a   75 (171)
T cd01913           1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AA   75 (171)
T ss_pred             CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HH
Confidence            6899999999999999999999853   68899999999 999999999999999999999999999987663     44


Q ss_pred             HHHHHHHHHHhhhcCCCCcce-eeeeEEEEeCCCCeEEEECCCCCeeeee--EEEEcCChHHHHHHHHHhhcCCCC-CCH
Q psy1918         114 ISIVGNKMQVCTQRYDKRPYG-VGLLVAGYDDAGPHIYQTCPSSNYYDVK--AMAIGSRSQSARTYLEKRLADFPE-ASL  189 (251)
Q Consensus       114 a~~l~~~~~~yt~~~~~rP~~-v~~iv~G~d~~gp~ly~id~~G~~~~~~--~~a~G~g~~~a~~~L~~~~~~~~~-~s~  189 (251)
                      ++.+... +.|    ..+|+. +.++++++|    +||.+||.|+..+.+  +.|+|+|+.+|.++|+.+|+  ++ |+ 
T Consensus        76 a~l~~~l-~~~----~~~~~l~a~~iv~~~~----~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk--~~~ms-  143 (171)
T cd01913          76 VELAKDW-RTD----RYLRRLEAMLIVADKE----HTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLD--HTDLS-  143 (171)
T ss_pred             HHHHHHH-Hhc----cCcCceEEEEEEeCCC----cEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhc--cCCCC-
Confidence            4443332 212    224555 777776553    899999999999984  99999999999999999999  54 99 


Q ss_pred             HHHHHHHHHHHHhhCCCCCCCCCCeEEEEE
Q psy1918         190 EEIVKHGLRALRDTLPNDSELTTKNVSIGL  219 (251)
Q Consensus       190 ~ea~~~~~~al~~~~~~d~~~~~~~iei~i  219 (251)
                        +.++|++|++.+.+||. .++++|++-.
T Consensus       144 --~~~la~~Av~~A~~rd~-~tg~~i~~~~  170 (171)
T cd01913         144 --AEEIARKALKIAADICI-YTNHNITVEE  170 (171)
T ss_pred             --HHHHHHHHHHHHHhhCc-ccCCCEEEEe
Confidence              55999999999999996 8999988754

HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.

>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit

Probab=99.96  E-value=1.6e-28  Score=198.77  Aligned_cols=164  Identities=17%  Similarity=0.116  Sum_probs=136.9

Q ss_pred             CcEEEeeeCCeEEEEEeccCccccc---cccCceEEE-cCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHH
Q psy1918          38 SATVGLKNKTHAVIIALKRAASELA---AHQKKIIVI-DDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRL  113 (251)
Q Consensus        38 ~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~l  113 (251)
                      +|+|||+++||||||+|+|++.+..   ++.+||++| ++|++||++|..+|++.|.++++.+++.|+.+.     .+.+
T Consensus         1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~   75 (171)
T TIGR03692         1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA   75 (171)
T ss_pred             CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence            6899999999999999999999853   688999999 599999999999999999999999999987642     3666


Q ss_pred             HHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeee--eEEEEcCChHHHHHHHHHhhcCCCCCCHHH
Q psy1918         114 ISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDV--KAMAIGSRSQSARTYLEKRLADFPEASLEE  191 (251)
Q Consensus       114 a~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~--~~~a~G~g~~~a~~~L~~~~~~~~~~s~~e  191 (251)
                      ++.+++. +.|   ...+.+.+.+++++|    ++||.+||.|+..+.  ++.++|+|+.+|.++|+.+|+. ++|+   
T Consensus        76 a~l~~~~-~~~---~~~~~l~a~~iv~~~----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~-~~~s---  143 (171)
T TIGR03692        76 VELAKDW-RTD---RYLRRLEAMLIVADK----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRN-TDLS---  143 (171)
T ss_pred             HHHHHHH-hhc---ccccccEEEEEEEcC----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhc-CCCC---
Confidence            6665553 111   111234477777644    499999999999997  5999999999999999999964 5777   


Q ss_pred             HHHHHHHHHHhhCCCCCCCCCCeEEEEE
Q psy1918         192 IVKHGLRALRDTLPNDSELTTKNVSIGL  219 (251)
Q Consensus       192 a~~~~~~al~~~~~~d~~~~~~~iei~i  219 (251)
                      |+++|++|++.+++||. .++++|++-.
T Consensus       144 a~~la~~Av~~A~~rd~-~sg~~i~v~~  170 (171)
T TIGR03692       144 AEEIAREALKIAADICI-YTNHNITIEE  170 (171)
T ss_pred             HHHHHHHHHHHHHhhCc-cCCCCEEEEe
Confidence            99999999999999996 8999988754

The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.

>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3

Probab=99.53  E-value=3.5e-15  Score=79.53  Aligned_cols=23  Identities=65%  Similarity=1.096  Sum_probs=22.3

Q ss_pred             CCCCceeecCCCcchhhchHHHH
Q psy1918          11 YDSDVTVWSPQGRLHQVEYAMEA   33 (251)
Q Consensus        11 yd~~~t~fsp~G~l~QvEya~~a   33 (251)
                      ||+++|+|||+|||+|||||++|
T Consensus         1 YD~~~t~FSp~Grl~QVEYA~~A   23 (23)
T PF10584_consen    1 YDRSITTFSPDGRLFQVEYAMKA   23 (23)
T ss_dssp             TSSSTTSBBTTSSBHHHHHHHHH
T ss_pred             CCCCceeECCCCeEEeeEeeecC
Confidence            89999999999999999999986

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....

>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=9.9e-11  Score=92.09  Aligned_cols=166  Identities=20%  Similarity=0.190  Sum_probs=119.7

Q ss_pred             cCCcEEEeeeCCeEEEEEeccCcccc---ccc---cCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q psy1918          36 QGSATVGLKNKTHAVIIALKRAASEL---AAH---QKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLP  109 (251)
Q Consensus        36 ~G~tvigi~~~dgVvla~d~~~~~~l---~~~---~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~  109 (251)
                      +++|+++++-++-|++|.|.+++-+.   ..+   ..||+  +.+++.|++|..+|+..+.+.+..+++.|.-+      
T Consensus         3 h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~--~gkvlaGFAGstADaftLfe~fe~kle~~~g~------   74 (178)
T COG5405           3 HMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLY--NGKVLAGFAGSTADAFTLFERFEAKLEQYQGD------   74 (178)
T ss_pred             eeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHc--CCcEEEEecccchhHHHHHHHHHHHHHHccCc------
Confidence            57999999999999999999998874   234   45565  56899999999999999999999999887421      


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeee--eEEEEcCChHHHHHHHHHhhcCCCCC
Q psy1918         110 VFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDV--KAMAIGSRSQSARTYLEKRLADFPEA  187 (251)
Q Consensus       110 ~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~--~~~a~G~g~~~a~~~L~~~~~~~~~~  187 (251)
                      +...+-.+++-+  ++.+ ..|.+.+-++++  |+  -.++-+.-.|-..+.  ..+|+|||..+|.......++. +++
T Consensus        75 L~raavelaKdw--r~Dk-~lr~LEAmllVa--d~--~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~-~~l  146 (178)
T COG5405          75 LFRAAVELAKDW--RTDK-YLRKLEAMLLVA--DK--THILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMEN-TEL  146 (178)
T ss_pred             HHHHHHHHHHhh--hhhh-HHHHHhhheeEe--CC--CcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhc-cCC
Confidence            333455555555  3332 234566777776  43  357777788887754  5899999999999998888764 567


Q ss_pred             CHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEe
Q psy1918         188 SLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVG  221 (251)
Q Consensus       188 s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~  221 (251)
                      +   |.+++.++|..+-+-. .+++.++.|-.++
T Consensus       147 s---A~eIa~~sl~iA~eic-iyTN~ni~ve~l~  176 (178)
T COG5405         147 S---AREIAEKSLKIAGDIC-IYTNHNIVVEELR  176 (178)
T ss_pred             C---HHHHHHHHHhhhheEE-EecCCcEEEEEee
Confidence            7   5556666776655332 3555566555443

>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=2.7e-10  Score=92.78  Aligned_cols=182  Identities=18%  Similarity=0.255  Sum_probs=139.4

Q ss_pred             cEEEeeeCCeEEEEEeccCcccc--ccccCceEEE---cCc-EEEEEeCcHHHHHHHHHHHHHHHHHHhhh-cCCCCCHH
Q psy1918          39 ATVGLKNKTHAVIIALKRAASEL--AAHQKKIIVI---DDH-MGLSFAGLTADARILARFMRMECLNYKYA-HKDTLPVF  111 (251)
Q Consensus        39 tvigi~~~dgVvla~d~~~~~~l--~~~~~Ki~~i---~~~-i~~~~sG~~~D~~~l~~~l~~~~~~~~~~-~~~~i~~~  111 (251)
                      -|||++...|.|+++|+|...+.  ....+|+|-.   +++ ++++.+|..+-.|.+++.+.+..+...-. .-.-.++-
T Consensus         3 YCv~l~l~~GlVf~sDsRTNAGvD~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~sm~   82 (255)
T COG3484           3 YCVGLILDFGLVFGSDSRTNAGVDYISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIPSMY   82 (255)
T ss_pred             eEEEEEeccceEEecccccccCchHHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhcchhHH
Confidence            48999999999999999999886  3566776644   233 56789999999999999998777532111 11234566


Q ss_pred             HHHHHHHHHHHHhhhcCC------CCcceeeeeEEEEeCCC-CeEEEECCCCCeeee----eEEEEcCChHHHHHHHHHh
Q psy1918         112 RLISIVGNKMQVCTQRYD------KRPYGVGLLVAGYDDAG-PHIYQTCPSSNYYDV----KAMAIGSRSQSARTYLEKR  180 (251)
Q Consensus       112 ~la~~l~~~~~~yt~~~~------~rP~~v~~iv~G~d~~g-p~ly~id~~G~~~~~----~~~a~G~g~~~a~~~L~~~  180 (251)
                      +.+.+++....+-.-+..      ---|.|+++++|.=.++ |.||.+-|.|++.+.    .+.-+|. +.+-+++|++.
T Consensus        83 eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiGE-tKYGKPildR~  161 (255)
T COG3484          83 EATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGE-TKYGKPILDRT  161 (255)
T ss_pred             HHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEccc-cccCchhhhhh
Confidence            777777776655443331      01367999999986544 899999999999965    6888997 56678999999


Q ss_pred             hcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCC
Q psy1918         181 LADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQ  224 (251)
Q Consensus       181 ~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~  224 (251)
                      ++  -+++++|+.++++-++...++.+. ..|-.+++-++.++-
T Consensus       162 i~--~~~pLeea~kcaLvS~DSTlkSNi-SVGlPldLl~~e~ds  202 (255)
T COG3484         162 IT--YDTPLEEAAKCALVSFDSTLKSNI-SVGLPLDLLVYEADS  202 (255)
T ss_pred             hh--ccCCHHHHhhheEEecchhhhccc-cccCCceeEEEeccc
Confidence            98  499999999999999988888775 567789998888874

>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=96.75  E-value=0.044  Score=45.04  Aligned_cols=151  Identities=21%  Similarity=0.210  Sum_probs=92.5

Q ss_pred             CcEEEeeeCCeEEEEEeccCccccccccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCC-CHHHHHHH
Q psy1918          38 SATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTL-PVFRLISI  116 (251)
Q Consensus        38 ~tvigi~~~dgVvla~d~~~~~~l~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i-~~~~la~~  116 (251)
                      +.+||.-+++|+|+|.|+|-                   +++-|.-.....|-+.|          |+-.+ +-+.|.+.
T Consensus         2 SLII~y~GknGaViaGDkR~-------------------I~F~G~~~~re~LEeeL----------YsG~IktdeEL~kk   52 (194)
T PF09894_consen    2 SLIIAYYGKNGAVIAGDKRN-------------------IAFRGDEEKREKLEEEL----------YSGKIKTDEELLKK   52 (194)
T ss_pred             eEEEEEecCCCcEEecccee-------------------eeecCCHHHHHHHHHHH----------hCCccCCHHHHHHH
Confidence            46899999999999999972                   56778887777776655          44444 55556555


Q ss_pred             HHHHH---HHhhhcCCCCcceeeeeEEEE------eCCCCeEEEE-------CCCCCeeeeeEEEEcCCh----------
Q psy1918         117 VGNKM---QVCTQRYDKRPYGVGLLVAGY------DDAGPHIYQT-------CPSSNYYDVKAMAIGSRS----------  170 (251)
Q Consensus       117 l~~~~---~~yt~~~~~rP~~v~~iv~G~------d~~gp~ly~i-------d~~G~~~~~~~~a~G~g~----------  170 (251)
                      ...+=   +.--.+...|-.+- ++++-+      |...-++|..       |-.|.-..  -...|.++          
T Consensus        53 A~Elgv~i~I~D~r~KV~~~~~-vlvGEV~s~~g~~skRRRiY~t~g~~~Ivei~~~~i~--~~~~g~~sgiIVfGNk~~  129 (194)
T PF09894_consen   53 AEELGVKIKITDDREKVRKIGD-VLVGEVTSISGKDSKRRRIYATKGKYAIVEIENDEIT--NKSRGEGSGIIVFGNKFT  129 (194)
T ss_pred             HHHcCCEEEEecCchheEEeCC-EEEEEEEEEcCccceeeEEEecCCCEEEEEecCCeEE--EEecCCceeEEEECCHHH
Confidence            44321   10001111112222 333322      3233456643       22332222  22334443          


Q ss_pred             -HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecC
Q psy1918         171 -QSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQN  223 (251)
Q Consensus       171 -~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~  223 (251)
                       +.|..+|+++|+  |.|+++++..+..++|..+...- +..+..+++...++.
T Consensus       130 K~ia~~~lkk~~~--~k~~l~~i~~i~~~i~~~~a~~t-psvS~~~d~~~~~~~  180 (194)
T PF09894_consen  130 KEIANKELKKYWK--PKMSLKDIENIFEKIMEEVASKT-PSVSKEYDIYITTKK  180 (194)
T ss_pred             HHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHhhcC-CCccCcEEEEEeccc
Confidence             667888999998  79999999999999999886443 466778888887764

They do show distant similarity to NTPases and to nucleic acid binding enzymes.

>COG4079 Uncharacterized protein conserved in archaea [Function unknown]

Probab=95.24  E-value=1.3  Score=37.83  Aligned_cols=168  Identities=18%  Similarity=0.197  Sum_probs=100.4

Q ss_pred             CcEEEeeeCCeEEEEEeccCccccccccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHH
Q psy1918          38 SATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIV  117 (251)
Q Consensus        38 ~tvigi~~~dgVvla~d~~~~~~l~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l  117 (251)
                      +.+|+..++||+|+|.|+|.                   +.+-|.-.|...+.+.|         -.|.--+-+.|++.+
T Consensus         2 tLviay~gknGaviaGDrR~-------------------i~frgdee~re~lEekL---------YsGeIkteEEL~r~a   53 (293)
T COG4079           2 TLVIAYIGKNGAVIAGDRRE-------------------ITFRGDEEDREKLEEKL---------YSGEIKTEEELARKA   53 (293)
T ss_pred             eEEEEEecCCCcEEeccceE-------------------EEEecChhHHHHHHHHh---------hcCccccHHHHHHHH
Confidence            46889999999999999872                   46678888877776655         134444666777766


Q ss_pred             HHHHHHhhh---cCCCCcceeeeeEEEEeCCC------CeEEEECCCCCeee-------eeEEEEcC-------C----h
Q psy1918         118 GNKMQVCTQ---RYDKRPYGVGLLVAGYDDAG------PHIYQTCPSSNYYD-------VKAMAIGS-------R----S  170 (251)
Q Consensus       118 ~~~~~~yt~---~~~~rP~~v~~iv~G~d~~g------p~ly~id~~G~~~~-------~~~~a~G~-------g----~  170 (251)
                      ...--..+-   +...|...-+++++-+...+      -++|-.  .|.+.-       .-....|.       |    -
T Consensus        54 eel~Vki~vtDdr~KVrk~~d~VvvGEV~s~~~~~vkRRRvYAT--~Ga~aIvel~gs~vts~~~g~g~aiIv~Gnk~~K  131 (293)
T COG4079          54 EELGVKITVTDDRNKVRKRNDGVVVGEVSSVERGIVKRRRVYAT--AGAYAIVELRGSEVTSTSQGKGSAIIVFGNKFTK  131 (293)
T ss_pred             HHcCCEEEEEcchHhhhcccCcEEEEEeecccccceeeeEEeec--CCceEEEEecCCeeEeeecCCCceEEEECcHHHH
Confidence            543211110   11112232344444443221      244432  233221       11122222       2    2


Q ss_pred             HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCC-ceEEecHHHHHHHH
Q psy1918         171 QSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQ-KFKTLDERETGHYL  238 (251)
Q Consensus       171 ~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~-~~~~l~~~ei~~~l  238 (251)
                      +.++.+|.++|.  +.++++++.++..++|..+.... ++.+..++++.+.++- ++.+|-+.+|+.+.
T Consensus       132 e~aneflk~~l~--~k~~lqd~~dal~elfe~vss~t-psVskeydiy~vs~~~d~~~rl~kkDie~L~  197 (293)
T COG4079         132 EVANEFLKDNLT--KKSKLQDAVDALMELFETVSSKT-PSVSKEYDIYQVSSNVDPVLRLVKKDIETLR  197 (293)
T ss_pred             HHHHHHHHhhcc--CCCCHHHHHHHHHHHHHHhhcCC-CcccceeEEEEecCCcCHHHHHHHHHHHHHH
Confidence            446778888888  57889999998888887776444 4677799999998753 36667666665543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	251
3unb_E	263	Mouse Constitutive 20s Proteasome In Complex With P		5e-97
1iru_F	263	Crystal Structure Of The Mammalian 20s Proteasome A		8e-97
1ryp_F	233	Crystal Structure Of The 20s Proteasome From Yeast		3e-57
1fnt_F	234	Crystal Structure Of The 20s Proteasome From Yeast		3e-57
4g4s_F	235	Structure Of Proteasome-Pba1-Pba2 Complex Length =		3e-57
1g0u_E	234	A Gated Channel Into The Proteasome Core Particle L		2e-56
3sdi_E	233	Structure Of Yeast 20s Open-Gate Proteasome With Co		3e-56
3unb_C	248	Mouse Constitutive 20s Proteasome In Complex With P		2e-35
3une_C	248	Mouse Constitutive 20s Proteasome Length = 248		4e-35
1iru_D	248	Crystal Structure Of The Mammalian 20s Proteasome A		5e-35
3jrm_A	227	Crystal Structure Of Archaeal 20s Proteasome In Com		1e-33
1pma_A	233	Proteasome From Thermoplasma Acidophilum Length = 2		1e-33
2ku1_A	237	Dynamic Regulation Of Archaeal Proteasome Gate Open		1e-33
1yar_A	233	Structure Of Archeabacterial 20s Proteasome Mutant		7e-33
1yau_A	233	Structure Of Archeabacterial 20s Proteasome- Pa26 C		1e-32
2ku2_A	237	Dynamic Regulation Of Archaeal Proteasome Gate Open		2e-32
1ryp_D	241	Crystal Structure Of The 20s Proteasome From Yeast		3e-32
1g0u_C	243	A Gated Channel Into The Proteasome Core Particle L		3e-32
1fnt_D	254	Crystal Structure Of The 20s Proteasome From Yeast		3e-32
3unb_D	241	Mouse Constitutive 20s Proteasome In Complex With P		5e-30
1j2q_A	237	20s Proteasome In Complex With Calpain-inhibitor I		2e-29
1iru_E	241	Crystal Structure Of The Mammalian 20s Proteasome A		3e-29
1j2p_A	246	Alpha-Ring From The Proteasome From Archaeoglobus F		4e-29
1iru_B	233	Crystal Structure Of The Mammalian 20s Proteasome A		5e-29
3unb_A	234	Mouse Constitutive 20s Proteasome In Complex With P		7e-29
1ryp_B	250	Crystal Structure Of The 20s Proteasome From Yeast		2e-28
1vsy_D	227	Proteasome Activator Complex Length = 227		2e-28
1iru_A	246	Crystal Structure Of The Mammalian 20s Proteasome A		3e-28
3unb_G	246	Mouse Constitutive 20s Proteasome In Complex With P		4e-28
3h4p_A	264	Proteasome 20s Core Particle From Methanocaldococcu		3e-27
1z7q_C	258	Crystal Structure Of The 20s Proteasome From Yeast		2e-26
1g0u_B	245	A Gated Channel Into The Proteasome Core Particle L		2e-26
1ryp_C	244	Crystal Structure Of The 20s Proteasome From Yeast		2e-26
3oeu_F	242	Structure Of Yeast 20s Open-Gate Proteasome With Co		3e-26
1ryp_G	244	Crystal Structure Of The 20s Proteasome From Yeast		3e-26
4g4s_E	261	Structure Of Proteasome-Pba1-Pba2 Complex Length =		3e-26
1fnt_E	260	Crystal Structure Of The 20s Proteasome From Yeast		3e-26
1g0u_F	248	A Gated Channel Into The Proteasome Core Particle L		3e-26
1g0u_D	241	A Gated Channel Into The Proteasome Core Particle L		4e-26
1z7q_G	288	Crystal Structure Of The 20s Proteasome From Yeast		4e-26
2z5c_C	262	Crystal Structure Of A Novel Chaperone Complex For		4e-26
1fnt_G	287	Crystal Structure Of The 20s Proteasome From Yeast		4e-26
1vsy_E	250	Proteasome Activator Complex Length = 250		4e-26
1iru_C	261	Crystal Structure Of The Mammalian 20s Proteasome A		4e-25
3unb_B	261	Mouse Constitutive 20s Proteasome In Complex With P		7e-25
3oeu_B	235	Structure Of Yeast 20s Open-Gate Proteasome With Co		1e-24
1ryp_E	242	Crystal Structure Of The 20s Proteasome From Yeast		3e-24
1vsy_B	231	Proteasome Activator Complex Length = 231		3e-24
1vsy_C	232	Proteasome Activator Complex Length = 232		2e-23
1iru_G	254	Crystal Structure Of The Mammalian 20s Proteasome A		3e-20
3unb_F	255	Mouse Constitutive 20s Proteasome In Complex With P		6e-20
1g0u_G	252	A Gated Channel Into The Proteasome Core Particle L		8e-20
1ryp_A	243	Crystal Structure Of The 20s Proteasome From Yeast		9e-20
1j2q_H	202	20s Proteasome In Complex With Calpain-inhibitor I		6e-12
1ya7_H	217	Implications For Interactions Of Proteasome With Pa		1e-10
1pma_B	211	Proteasome From Thermoplasma Acidophilum Length = 2		1e-10
3c91_H	203	Thermoplasma Acidophilum 20s Proteasome With An Ope		1e-09
3h4p_a	219	Proteasome 20s Core Particle From Methanocaldococcu		3e-05
3unb_K	205	Mouse Constitutive 20s Proteasome In Complex With P		1e-04
1iru_L	204	Crystal Structure Of The Mammalian 20s Proteasome A		3e-04

>pdb|3UNB|E Chain E, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 263

Iteration: 1
 Score =  350 bits (898), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 156/232 (67%), Positives = 201/232 (86%)
Query: 7   FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK 66
           FRNQYD+DVTVWSPQGR+HQ+EYAMEAVKQGSATVGLK+KTHAV++ALKRA SELAAHQK
Sbjct: 2   FRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQK 61
Query: 67  KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
           KI+ +D+H+G+S AGLTADAR+L  FMR ECL+ ++     LPV RL+S++G+K Q+ TQ
Sbjct: 62  KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQ 121
Query: 127 RYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 186
           RY +RPYGVGLL+AGYDD GPHI+QTCPS+NY+D +AM+IG+RSQSARTYLE+ +++F E
Sbjct: 122 RYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFME 181
Query: 187 ASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYL 238
            +L+E+VKHGLRALR+TLP + +LTTKNVSIG+VG++ +F   D+ +   +L
Sbjct: 182 CNLDELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFL 233

>pdb|1IRU|F Chain F, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 263

Iteration: 1
 Score =  349 bits (896), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 156/232 (67%), Positives = 200/232 (86%)
Query: 7   FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK 66
           FRNQYD+DVTVWSPQGR+HQ+EYAMEAVKQGSATVGLK+KTHAV++ALKRA SELAAHQK
Sbjct: 2   FRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQK 61
Query: 67  KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
           KI+ +D+H+G+S AGLTADAR+L  FMR ECL+ ++     LPV RL+S++G+K Q+ TQ
Sbjct: 62  KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQ 121
Query: 127 RYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 186
           RY +RPYGVGLL+AGYDD GPHI+QTCPS+NY+D +AM+IG+RSQSARTYLE+ +++F E
Sbjct: 122 RYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFME 181
Query: 187 ASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYL 238
            +L E+VKHGLRALR+TLP + +LTTKNVSIG+VG++ +F   D+ +   +L
Sbjct: 182 CNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFL 233

>pdb|1RYP|F Chain F, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 233

Iteration: 1
 Score =  218 bits (555), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 110/234 (47%), Positives = 151/234 (64%), Gaps = 3/234 (1%)
Query: 7   FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK 66
           FRN YD D   +SP GRL QVEYA+EA+KQGS TVGL++ THAV++ALKR A EL+++QK
Sbjct: 1   FRNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELSSYQK 60
Query: 67  KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
           KII  D+HMGLS AGL  DAR+L+ ++R +C          L V R   ++ +K Q  TQ
Sbjct: 61  KIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQ 120
Query: 127 RYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADF-- 184
            Y  RPYGVGLL+ GYD +G H+ +  PS N  ++   AIG+RSQ A+TYLE+ L  F  
Sbjct: 121 SYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIK 180
Query: 185 PEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYL 238
            + + +E++K G+ A+  +L  D  LT  N+SI +VG++  F   D      Y+
Sbjct: 181 IDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDTPFTIYDGEAVAKYI 233

>pdb|1FNT|F Chain F, Crystal Structure Of The 20s Proteasome From Yeast In Complex With The Proteasome Activator Pa26 From Trypanosome Brucei At 3.2 Angstroms Resolution Length = 234

Iteration: 1
 Score =  218 bits (555), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 110/234 (47%), Positives = 151/234 (64%), Gaps = 3/234 (1%)
Query: 7   FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK 66
           FRN YD D   +SP GRL QVEYA+EA+KQGS TVGL++ THAV++ALKR A EL+++QK
Sbjct: 2   FRNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELSSYQK 61
Query: 67  KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
           KII  D+HMGLS AGL  DAR+L+ ++R +C          L V R   ++ +K Q  TQ
Sbjct: 62  KIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQ 121
Query: 127 RYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADF-- 184
            Y  RPYGVGLL+ GYD +G H+ +  PS N  ++   AIG+RSQ A+TYLE+ L  F  
Sbjct: 122 SYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIK 181
Query: 185 PEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYL 238
            + + +E++K G+ A+  +L  D  LT  N+SI +VG++  F   D      Y+
Sbjct: 182 IDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDTPFTIYDGEAVAKYI 234

>pdb|4G4S|F Chain F, Structure Of Proteasome-Pba1-Pba2 Complex Length = 235

Iteration: 1
 Score =  218 bits (555), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 110/234 (47%), Positives = 151/234 (64%), Gaps = 3/234 (1%)
Query: 7   FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK 66
           FRN YD D   +SP GRL QVEYA+EA+KQGS TVGL++ THAV++ALKR A EL+++QK
Sbjct: 3   FRNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELSSYQK 62
Query: 67  KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
           KII  D+HMGLS AGL  DAR+L+ ++R +C          L V R   ++ +K Q  TQ
Sbjct: 63  KIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQ 122
Query: 127 RYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADF-- 184
            Y  RPYGVGLL+ GYD +G H+ +  PS N  ++   AIG+RSQ A+TYLE+ L  F  
Sbjct: 123 SYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIK 182
Query: 185 PEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYL 238
            + + +E++K G+ A+  +L  D  LT  N+SI +VG++  F   D      Y+
Sbjct: 183 IDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDTPFTIYDGEAVAKYI 235

>pdb|1G0U|E Chain E, A Gated Channel Into The Proteasome Core Particle Length = 234

Iteration: 1
 Score =  215 bits (547), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 109/234 (46%), Positives = 150/234 (64%), Gaps = 3/234 (1%)
Query: 7   FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK 66
           FRN YD D   +SP GRL QVEYA+EA+KQGS TVGL++ THAV++ALKR A EL+++QK
Sbjct: 2   FRNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELSSYQK 61
Query: 67  KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
           KII  D+HMGLS AGL  DAR+L+ ++R +C          L V R   ++ +K Q  TQ
Sbjct: 62  KIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQ 121
Query: 127 RYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADF-- 184
               RPYGVGLL+ GYD +G H+ +  PS N  ++   AIG+RSQ A+TYLE+ L  F  
Sbjct: 122 SAGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIK 181
Query: 185 PEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYL 238
            + + +E++K G+ A+  +L  D  LT  N+SI +VG++  F   D      Y+
Sbjct: 182 IDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDTPFTIYDGEAVAKYI 234

>pdb|3SDI|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound 20 Length = 233

Iteration: 1
 Score =  214 bits (546), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 109/234 (46%), Positives = 150/234 (64%), Gaps = 3/234 (1%)
Query: 7   FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK 66
           FRN YD D   +SP GRL QVEYA+EA+KQGS TVGL++ THAV++ALKR A EL+++QK
Sbjct: 1   FRNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELSSYQK 60
Query: 67  KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
           KII  D+HMGLS AGL  DAR+L+ ++R +C          L V R   ++ +K Q  TQ
Sbjct: 61  KIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQ 120
Query: 127 RYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADF-- 184
               RPYGVGLL+ GYD +G H+ +  PS N  ++   AIG+RSQ A+TYLE+ L  F  
Sbjct: 121 SAGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIK 180
Query: 185 PEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYL 238
            + + +E++K G+ A+  +L  D  LT  N+SI +VG++  F   D      Y+
Sbjct: 181 IDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDTPFTIYDGEAVAKYI 233

>pdb|3UNB|C Chain C, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 248

Iteration: 1
 Score =  145 bits (365), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 82/232 (35%), Positives = 136/232 (58%), Gaps = 7/232 (3%)
Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ--KKI 68
           YD  +TV+SP G L QVEYA EAVK+GS  VG++ K   V+   K++ ++L   +  +KI
Sbjct: 3   YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVAKKSVAKLQDERTVRKI 62
Query: 69  IVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY 128
             +DD++ ++FAGLTADARI+    R+EC +++   +D + V  +   + +  Q  TQ  
Sbjct: 63  CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 122
Query: 129 DKRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEA 187
            +RP+G+  L+ G+D D  P +YQT PS  Y+  KA AIG  ++S R +LEK   D    
Sbjct: 123 GRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDDAIE 182
Query: 188 SLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLS 239
           + +  +K  ++AL + + +      KN+ + ++ ++Q  K L+  E   Y++
Sbjct: 183 TDDLTIKLVIKALLEVVQSGG----KNIELAVMRRDQPLKILNPEEIEKYVA 230

>pdb|3UNE|C Chain C, Mouse Constitutive 20s Proteasome Length = 248

Iteration: 1
 Score =  144 bits (364), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 82/232 (35%), Positives = 136/232 (58%), Gaps = 7/232 (3%)
Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ--KKI 68
           YD  +TV+SP G L QVEYA EAVK+GS  VG++ K   V+   K++ ++L   +  +KI
Sbjct: 3   YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKLQDERTVRKI 62
Query: 69  IVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY 128
             +DD++ ++FAGLTADARI+    R+EC +++   +D + V  +   + +  Q  TQ  
Sbjct: 63  CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 122
Query: 129 DKRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEA 187
            +RP+G+  L+ G+D D  P +YQT PS  Y+  KA AIG  ++S R +LEK   D    
Sbjct: 123 GRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDDAIE 182
Query: 188 SLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLS 239
           + +  +K  ++AL + + +      KN+ + ++ ++Q  K L+  E   Y++
Sbjct: 183 TDDLTIKLVIKALLEVVQSGG----KNIELAVMRRDQPLKILNPEEIEKYVA 230

>pdb|1IRU|D Chain D, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 248

Iteration: 1
 Score =  144 bits (363), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 81/232 (34%), Positives = 136/232 (58%), Gaps = 7/232 (3%)
Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ--KKI 68
           YD  +TV+SP G L QVEYA EAVK+GS  VG++ +   V+   K++ ++L   +  +KI
Sbjct: 3   YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKI 62
Query: 69  IVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY 128
             +DD++ ++FAGLTADARI+    R+EC +++   +D + V  +   + +  Q  TQ  
Sbjct: 63  CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 122
Query: 129 DKRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEA 187
            +RP+G+  L+ G+D D  P +YQT PS  Y+  KA AIG  ++S R +LEK   D    
Sbjct: 123 GRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIE 182
Query: 188 SLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLS 239
           + +  +K  ++AL + + +      KN+ + ++ ++Q  K L+  E   Y++
Sbjct: 183 TDDLTIKLVIKALLEVVQSGG----KNIELAVMRRDQSLKILNPEEIEKYVA 230

>pdb|3JRM|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex With Mutated P26 Activator Length = 227

Iteration: 1
 Score =  139 bits (351), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 83/231 (35%), Positives = 126/231 (54%), Gaps = 8/231 (3%)
Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ--KKI 68
           YD  +TV+SP GRL QVEYA EAVK+GS  +G+K     ++I+ K+  S L      +KI
Sbjct: 2   YDRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKI 61
Query: 69  IVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY 128
            +IDD++    +GL ADAR+L  F R+     K  +   + +  L+  V ++MQ  TQ  
Sbjct: 62  QLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYG 121
Query: 129 DKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLAD-FPEA 187
             RPYGV L+ AG D  GP ++   P+    + KA AIGS   +  ++LE+   +  PE 
Sbjct: 122 GVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPE- 180
Query: 188 SLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYL 238
             +E V  G++AL+ +L    EL    ++   VG   K++  D+ E   +L
Sbjct: 181 --KEAVTLGIKALKSSLEEGEELKAPEIASITVG--NKYRIYDQEEVKKFL 227

>pdb|1PMA|A Chain A, Proteasome From Thermoplasma Acidophilum Length = 233

Iteration: 1
 Score =  139 bits (351), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 83/231 (35%), Positives = 126/231 (54%), Gaps = 8/231 (3%)
Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ--KKI 68
           YD  +TV+SP GRL QVEYA EAVK+GS  +G+K     ++I+ K+  S L      +KI
Sbjct: 8   YDRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKI 67
Query: 69  IVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY 128
            +IDD++    +GL ADAR+L  F R+     K  +   + +  L+  V ++MQ  TQ  
Sbjct: 68  QLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYG 127
Query: 129 DKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLAD-FPEA 187
             RPYGV L+ AG D  GP ++   P+    + KA AIGS   +  ++LE+   +  PE 
Sbjct: 128 GVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPE- 186
Query: 188 SLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYL 238
             +E V  G++AL+ +L    EL    ++   VG   K++  D+ E   +L
Sbjct: 187 --KEAVTLGIKALKSSLEEGEELKAPEIASITVG--NKYRIYDQEEVKKFL 233

>pdb|2KU1|A Chain A, Dynamic Regulation Of Archaeal Proteasome Gate Opening As Studied By Trosy-Nmr Length = 237

Iteration: 1
 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 83/231 (35%), Positives = 126/231 (54%), Gaps = 8/231 (3%)
Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ--KKI 68
           YD  +TV+SP GRL QVEYA EAVK+GS  +G+K     ++I+ K+  S L      +KI
Sbjct: 12  YDRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKI 71
Query: 69  IVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY 128
            +IDD++    +GL ADAR+L  F R+     K  +   + +  L+  V ++MQ  TQ  
Sbjct: 72  QLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYG 131
Query: 129 DKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLAD-FPEA 187
             RPYGV L+ AG D  GP ++   P+    + KA AIGS   +  ++LE+   +  PE 
Sbjct: 132 GVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPE- 190
Query: 188 SLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYL 238
             +E V  G++AL+ +L    EL    ++   VG   K++  D+ E   +L
Sbjct: 191 --KEAVTLGIKALKSSLEEGEELKAPEIASITVG--NKYRIYDQEEVKKFL 237

>pdb|1YAR|A Chain A, Structure Of Archeabacterial 20s Proteasome Mutant D9s- Pa26 Complex Length = 233

Iteration: 1
 Score =  137 bits (344), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 82/231 (35%), Positives = 125/231 (54%), Gaps = 8/231 (3%)
Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ--KKI 68
           Y   +TV+SP GRL QVEYA EAVK+GS  +G+K     ++I+ K+  S L      +KI
Sbjct: 8   YSRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKI 67
Query: 69  IVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY 128
            +IDD++    +GL ADAR+L  F R+     K  +   + +  L+  V ++MQ  TQ  
Sbjct: 68  QLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYG 127
Query: 129 DKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLAD-FPEA 187
             RPYGV L+ AG D  GP ++   P+    + KA AIGS   +  ++LE+   +  PE 
Sbjct: 128 GVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPE- 186
Query: 188 SLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYL 238
             +E V  G++AL+ +L    EL    ++   VG   K++  D+ E   +L
Sbjct: 187 --KEAVTLGIKALKSSLEEGEELKAPEIASITVG--NKYRIYDQEEVKKFL 233

>pdb|1YAU|A Chain A, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex Length = 233

Iteration: 1
 Score =  135 bits (341), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 124/227 (54%), Gaps = 8/227 (3%)
Query: 15  VTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ--KKIIVID 72
           +TV+SP GRL QVEYA EAVK+GS  +G+K     ++I+ K+  S L      +KI +ID
Sbjct: 12  ITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLID 71
Query: 73  DHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRP 132
           D++    +GL ADAR+L  F R+     K  +   + +  L+  V ++MQ  TQ    RP
Sbjct: 72  DYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRP 131
Query: 133 YGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLAD-FPEASLEE 191
           YGV L+ AG D  GP ++   P+    + KA AIGS   +  ++LE+   +  PE   +E
Sbjct: 132 YGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPE---KE 188
Query: 192 IVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYL 238
            V  G++AL+ +L    EL    ++   VG   K++  D+ E   +L
Sbjct: 189 AVTLGIKALKSSLEEGEELKAPEIASITVG--NKYRIYDQEEVKKFL 233

>pdb|2KU2|A Chain A, Dynamic Regulation Of Archaeal Proteasome Gate Opening As Studied By Trosy-Nmr Length = 237

Iteration: 1
 Score =  135 bits (341), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 124/227 (54%), Gaps = 8/227 (3%)
Query: 15  VTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ--KKIIVID 72
           +TV+SP GRL QVEYA EAVK+GS  +G+K     ++I+ K+  S L      +KI +ID
Sbjct: 16  ITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLID 75
Query: 73  DHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRP 132
           D++    +GL ADAR+L  F R+     K  +   + +  L+  V ++MQ  TQ    RP
Sbjct: 76  DYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRP 135
Query: 133 YGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLAD-FPEASLEE 191
           YGV L+ AG D  GP ++   P+    + KA AIGS   +  ++LE+   +  PE   +E
Sbjct: 136 YGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPE---KE 192
Query: 192 IVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYL 238
            V  G++AL+ +L    EL    ++   VG   K++  D+ E   +L
Sbjct: 193 AVTLGIKALKSSLEEGEELKAPEIASITVG--NKYRIYDQEEVKKFL 237

>pdb|1RYP|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 241

Iteration: 1
 Score =  135 bits (339), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 85/237 (35%), Positives = 128/237 (54%), Gaps = 10/237 (4%)
Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ---KK 67
           YD  ++++SP G + QVEYA+EAVK+G+  VG+K K   V+   +R+  +L   +    K
Sbjct: 2   YDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSK 61
Query: 68  IIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQR 127
           +  ID H+ LSF+GL AD+RIL    R+E  +++   +D + V  L   V    Q  TQ 
Sbjct: 62  VSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQS 121
Query: 128 YDKRPYGVGLLVAGYD--DAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRL-ADF 184
              RP+GV  L+AG+D  D  P +YQT PS  Y    A  IG  S++ R +LEK      
Sbjct: 122 GGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKE 181
Query: 185 PEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLI 241
           P A++EE VK  +R+L + +    +   KN+ I +V  +     L   E   Y++ I
Sbjct: 182 PPATVEECVKLTVRSLLEVV----QTGAKNIEITVVKPDSDIVALSSEEINQYVTQI 234

>pdb|1G0U|C Chain C, A Gated Channel Into The Proteasome Core Particle Length = 243

Iteration: 1
 Score =  135 bits (339), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 85/237 (35%), Positives = 128/237 (54%), Gaps = 10/237 (4%)
Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ---KK 67
           YD  ++++SP G + QVEYA+EAVK+G+  VG+K K   V+   +R+  +L   +    K
Sbjct: 4   YDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSK 63
Query: 68  IIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQR 127
           +  ID H+ LSF+GL AD+RIL    R+E  +++   +D + V  L   V    Q  TQ 
Sbjct: 64  VSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQS 123
Query: 128 YDKRPYGVGLLVAGYD--DAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRL-ADF 184
              RP+GV  L+AG+D  D  P +YQT PS  Y    A  IG  S++ R +LEK      
Sbjct: 124 GGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKE 183
Query: 185 PEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLI 241
           P A++EE VK  +R+L + +    +   KN+ I +V  +     L   E   Y++ I
Sbjct: 184 PPATVEECVKLTVRSLLEVV----QTGAKNIEITVVKPDSDIVALSSEEINQYVTQI 236

>pdb|1FNT|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast In Complex With The Proteasome Activator Pa26 From Trypanosome Brucei At 3.2 Angstroms Resolution Length = 254

Iteration: 1
 Score =  135 bits (339), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 85/237 (35%), Positives = 128/237 (54%), Gaps = 10/237 (4%)
Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ---KK 67
           YD  ++++SP G + QVEYA+EAVK+G+  VG+K K   V+   +R+  +L   +    K
Sbjct: 4   YDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSK 63
Query: 68  IIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQR 127
           +  ID H+ LSF+GL AD+RIL    R+E  +++   +D + V  L   V    Q  TQ 
Sbjct: 64  VSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQS 123
Query: 128 YDKRPYGVGLLVAGYD--DAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRL-ADF 184
              RP+GV  L+AG+D  D  P +YQT PS  Y    A  IG  S++ R +LEK      
Sbjct: 124 GGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKE 183
Query: 185 PEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLI 241
           P A++EE VK  +R+L + +    +   KN+ I +V  +     L   E   Y++ I
Sbjct: 184 PPATVEECVKLTVRSLLEVV----QTGAKNIEITVVKPDSDIVALSSEEINQYVTQI 236

>pdb|3UNB|D Chain D, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 241

Iteration: 1
 Score =  127 bits (320), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 122/233 (52%), Gaps = 11/233 (4%)
Query: 8   RNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASEL--AAHQ 65
           R++YD  V  +SP+GRL QVEYA+EA+K GS  +G++      +   KR  S L   +  
Sbjct: 5   RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSI 64
Query: 66  KKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGN-KMQVC 124
           +KI+ ID H+G + +GL ADA+ L    R+E  N+ + + +T+ V  +   V N  +Q  
Sbjct: 65  EKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFG 124
Query: 125 TQRYD----KRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKR 180
            +  D     RP+GV LL  G D+ GP ++   PS  +    A AIGS S+ A++ L++ 
Sbjct: 125 EEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEV 184
Query: 181 LADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERE 233
                  +L+E +K  L  L+  +  + +L   N+ +  V   Q F    + E
Sbjct: 185 Y--HKSMTLKEAIKSSLIILKQVM--EEKLNATNIELATVQPGQNFHMFTKEE 233

>pdb|1J2Q|A Chain A, 20s Proteasome In Complex With Calpain-inhibitor I From Archaeoglobus Fulgidus Length = 237

Iteration: 1
 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/228 (36%), Positives = 126/228 (55%), Gaps = 8/228 (3%)
Query: 15  VTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASEL--AAHQKKIIVID 72
           +TV+SP GRL QVEYA EAVK+G+  +G+K K   ++IA KR  S+L  A   +KI  ID
Sbjct: 3   ITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADTIEKIYKID 62
Query: 73  DHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRP 132
           +H+  + +GL ADAR+L    R+E    +  + + + V  L   + +  Q  TQ    RP
Sbjct: 63  EHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRP 122
Query: 133 YGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEI 192
           +GV LL+AG D+  P +Y+T PS    + KA AIG    +   + EK   D  + S ++ 
Sbjct: 123 FGVSLLIAGVDEV-PKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRD--DLSFDDA 179
Query: 193 VKHGLRALRDTLPNDSELTTKNVSIGLVG-QNQKFKTLDERETGHYLS 239
           +  GL A+   L  +SEL  +N+ +G V   ++ FK +   E   Y+ 
Sbjct: 180 MVLGLVAM--GLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVE 225

>pdb|1IRU|E Chain E, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 241

Iteration: 1
 Score =  125 bits (313), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 121/233 (51%), Gaps = 11/233 (4%)
Query: 8   RNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASEL--AAHQ 65
           R++YD  V  +SP+GRL QVEY +EA+K GS  +G++      +   KR  S L   +  
Sbjct: 5   RSEYDRGVNTFSPEGRLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSI 64
Query: 66  KKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGN-KMQVC 124
           +KI+ ID H+G + +GL ADA+ L    R+E  N+ + + +T+ V  +   V N  +Q  
Sbjct: 65  EKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFG 124
Query: 125 TQRYD----KRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKR 180
            +  D     RP+GV LL  G D+ GP ++   PS  +    A AIGS S+ A++ L++ 
Sbjct: 125 EEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEL 184
Query: 181 LADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERE 233
                  +L+E +K  L  L+  +  + +L   N+ +  V   Q F    + E
Sbjct: 185 Y--HKSMTLKEAIKSSLIILKQVM--EEKLNATNIELATVQPGQNFHMFTKEE 233

>pdb|1J2P|A Chain A, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus Length = 246

Iteration: 1
 Score =  124 bits (312), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 83/232 (35%), Positives = 126/232 (54%), Gaps = 8/232 (3%)
Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ--KKI 68
           YD  +TV+SP GRL QVEYA EAVK+G+  +G+K K   ++IA KR  S+L      +KI
Sbjct: 8   YDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKI 67
Query: 69  IVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY 128
             ID+H+  + +GL ADAR+L    R+E    +  +   + V  L   + +  Q  TQ  
Sbjct: 68  YKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYG 127
Query: 129 DKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEAS 188
             RP+GV LL+AG ++  P +Y+T PS    + KA AIG    +   + EK   D  + S
Sbjct: 128 GVRPFGVSLLIAGVNEV-PKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRD--DLS 184
Query: 189 LEEIVKHGLRALRDTLPNDSELTTKNVSIGLVG-QNQKFKTLDERETGHYLS 239
            ++ +  GL A+   L  +SEL  +N+ +G V   ++ FK +   E   Y+ 
Sbjct: 185 FDDAMVLGLVAM--GLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVE 234

>pdb|1IRU|B Chain B, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 233

Iteration: 1
 Score =  124 bits (311), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 126/233 (54%), Gaps = 7/233 (3%)
Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK--KI 68
           Y   +T +SP G+L Q+EYA+ AV  G+ +VG+K     V+   K+  S L   +   K+
Sbjct: 5   YSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKV 64
Query: 69  IVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY 128
             I  H+GL ++G+  D R+L    R     Y   +++ +P  +L+  V + MQ  TQ  
Sbjct: 65  EPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSG 124
Query: 129 DKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEAS 188
             RP+GV LL+ G+++  P+++Q+ PS  Y+  KA A+G    + +T+LEKR  +  +  
Sbjct: 125 GVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNE--DLE 182
Query: 189 LEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLI 241
           LE+ +   +  L+++   + ++T  N+ +G+  +   F+ L   E   YL+ I
Sbjct: 183 LEDAIHTAILTLKESF--EGQMTEDNIEVGICNE-AGFRRLTPTEVKDYLAAI 232

>pdb|3UNB|A Chain A, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 234

Iteration: 1
 Score =  124 bits (310), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 126/233 (54%), Gaps = 7/233 (3%)
Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK--KI 68
           Y   +T +SP G+L Q+EYA+ AV  G+ +VG+K     V+   K+  S L   +   K+
Sbjct: 6   YSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKV 65
Query: 69  IVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY 128
             I  H+GL ++G+  D R+L    R     Y   +++ +P  +L+  V + MQ  TQ  
Sbjct: 66  EPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSG 125
Query: 129 DKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEAS 188
             RP+GV LL+ G+++  P+++Q+ PS  Y+  KA A+G    + +T+LEKR  +  +  
Sbjct: 126 GVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNE--DLE 183
Query: 189 LEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLI 241
           LE+ +   +  L+++   + ++T  N+ +G+  +   F+ L   E   YL+ I
Sbjct: 184 LEDAIHTAILTLKESF--EGQMTEDNIEVGICNE-AGFRRLTPTEVRDYLAAI 233

>pdb|1RYP|B Chain B, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 250

Iteration: 1
 Score =  122 bits (307), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/217 (33%), Positives = 124/217 (57%), Gaps = 8/217 (3%)
Query: 9   NQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ--K 66
           ++Y   +T +SP G+L Q++YA+ AVKQG  ++G+K     VI   K+++S LA  +   
Sbjct: 3   DRYSFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLS 62
Query: 67  KIIVIDDHMGLSFAGLTADARILA-RFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCT 125
           K+ ++   +G  ++G+  D R+L  +  ++   +YK  + +  P   L+S V   MQ  T
Sbjct: 63  KVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEAT 122
Query: 126 QRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADF 184
           Q    RP+GV LL+AG+D+  G  +YQ  PS +Y+  KA AIG  S +A+T+LEKR  D 
Sbjct: 123 QSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWND- 181
Query: 185 PEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVG 221
            E  LE+ +   L  L++++  + E     + + ++G
Sbjct: 182 -ELELEDAIHIALLTLKESV--EGEFNGDTIELAIIG 215

>pdb|1VSY|D Chain D, Proteasome Activator Complex Length = 227

Iteration: 1
 Score =  122 bits (306), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 119/224 (53%), Gaps = 10/224 (4%)
Query: 24  LHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ---KKIIVIDDHMGLSFA 80
           + QVEYA+EAVK+G+  VG+K K   V+   +R+  +L   +    K+  ID H+ LSF+
Sbjct: 1   IFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFS 60
Query: 81  GLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVA 140
           GL AD+RIL    R+E  +++   +D + V  L   V    Q  TQ    RP+GV  L+A
Sbjct: 61  GLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIA 120
Query: 141 GYD--DAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRL-ADFPEASLEEIVKHGL 197
           G+D  D  P +YQT PS  Y    A  IG  S++ R +LEK      P A++EE VK  +
Sbjct: 121 GFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTV 180
Query: 198 RALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLI 241
           R+L + +   +    KN+ I +V  +     L   E   Y++ I
Sbjct: 181 RSLLEVVQTGA----KNIEITVVKPDSDIVALSSEEINQYVTQI 220

>pdb|1IRU|A Chain A, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 246

Iteration: 1
 Score =  122 bits (305), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 125/233 (53%), Gaps = 7/233 (3%)
Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSAT-VGLKNKTHAVIIALKRAASEL--AAHQKK 67
           +D  +T++SP+GRL+QVEYA +A+ QG  T V ++ K  AVI+  K+   +L  ++    
Sbjct: 9   FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH 68
Query: 68  IIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQR 127
           +  I +++G    G+TAD+R   +  R E  N+KY +   +PV  L   + +  QV TQ 
Sbjct: 69  LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQN 128
Query: 128 YDKRPYGVGLLVAGYDDA-GPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 186
            + RP G  +++ G D+  GP +Y+  P+  Y   KA A G +   + ++LEK++    +
Sbjct: 129 AEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFD 188
Query: 187 ASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVG-QNQKFKTLDERETGHYL 238
            + E+ V+  +  L   L  D       + +G+V  +N KF+ L E E   +L
Sbjct: 189 WTFEQTVETAITCLSTVLSID--FKPSEIEVGVVTVENPKFRILTEAEIDAHL 239

>pdb|3UNB|G Chain G, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 246

Iteration: 1
 Score =  121 bits (303), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 124/233 (53%), Gaps = 7/233 (3%)
Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSAT-VGLKNKTHAVIIALKRAASEL--AAHQKK 67
           +D  +T++SP+GRL+QVEYA +A+ QG  T V ++ K  AVI+  K+   +L  ++    
Sbjct: 9   FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH 68
Query: 68  IIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQR 127
           +  I + +G    G+TAD+R   +  R E  N+KY +   +PV  L   + +  QV TQ 
Sbjct: 69  LFKITESIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQN 128
Query: 128 YDKRPYGVGLLVAGYDDA-GPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 186
            + RP G  +++ G D+  GP +Y+  P+  Y   KA A G +   + ++LEK++    +
Sbjct: 129 AEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFD 188
Query: 187 ASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVG-QNQKFKTLDERETGHYL 238
            + E+ V+  +  L   L  D       + +G+V  +N KF+ L E E   +L
Sbjct: 189 WTFEQTVETAITCLSTVLSID--FKPSEIEVGVVTVENPKFRILTEAEIDAHL 239

>pdb|3H4P|A Chain A, Proteasome 20s Core Particle From Methanocaldococcus Jannaschii Length = 264

Iteration: 1
 Score =  118 bits (296), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 126/224 (56%), Gaps = 8/224 (3%)
Query: 9   NQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ--K 66
           + YD  +TV+SP+GRL+QVEYA EAV++G+  +G+  K   V+   +R  S+L   +  +
Sbjct: 10  SAYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIE 69
Query: 67  KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
           KI  IDDH+  + +GL ADAR+L    R+E   Y+  + + + +  L   + +  Q  TQ
Sbjct: 70  KIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQ 129
Query: 127 RYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 186
               RP+GV LL+AG D     +++T PS    + KA AIGS        LEK   D  +
Sbjct: 130 HGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRD--D 187
Query: 187 ASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVG-QNQKFKTL 229
            +L+E ++  + AL  T  N+ ++  +NV + ++  ++ +FK +
Sbjct: 188 ITLDEGLELAITAL--TKANE-DIKPENVDVCIITVKDAQFKKI 228

>pdb|1Z7Q|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast In Complex With The Proteasome Activator Pa26 From Trypanosome Brucei At 3.2 Angstroms Resolution Length = 258

Iteration: 1
 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 115/206 (55%), Gaps = 7/206 (3%)
Query: 10  QYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ---K 66
           +YDS  T++SP+GRL+QVEYA+E++      +G+      V+ A ++  S L       +
Sbjct: 5   RYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTE 64
Query: 67  KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
           K+  ++D + ++ AGLTADA IL    R+   NY   + + +PV  L+  + +  Q  TQ
Sbjct: 65  KLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQ 124
Query: 127 RYDKRPYGVGLLVAGYDDA-GPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFP 185
               RP+GV  + AGYDD  G  +Y + PS NY   KA+++G+ + +A+T L+    D  
Sbjct: 125 HGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKD-- 182
Query: 186 EASLEEIVKHGLRALRDTLPNDSELT 211
           +  +++ ++  L+ L  T  + S LT
Sbjct: 183 DMKVDDAIELALKTLSKT-TDSSALT 207

>pdb|1G0U|B Chain B, A Gated Channel Into The Proteasome Core Particle Length = 245

Iteration: 1
 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 115/206 (55%), Gaps = 7/206 (3%)
Query: 10  QYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ---K 66
           +YDS  T++SP+GRL+QVEYA+E++      +G+      V+ A ++  S L       +
Sbjct: 5   RYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTE 64
Query: 67  KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
           K+  ++D + ++ AGLTADA IL    R+   NY   + + +PV  L+  + +  Q  TQ
Sbjct: 65  KLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQ 124
Query: 127 RYDKRPYGVGLLVAGYDDA-GPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFP 185
               RP+GV  + AGYDD  G  +Y + PS NY   KA+++G+ + +A+T L+    D  
Sbjct: 125 HGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKD-- 182
Query: 186 EASLEEIVKHGLRALRDTLPNDSELT 211
           +  +++ ++  L+ L  T  + S LT
Sbjct: 183 DMKVDDAIELALKTLSKT-TDSSALT 207

>pdb|1RYP|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 244

Iteration: 1
 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 115/206 (55%), Gaps = 7/206 (3%)
Query: 10  QYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ---K 66
           +YDS  T++SP+GRL+QVEYA+E++      +G+      V+ A ++  S L       +
Sbjct: 4   RYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTE 63
Query: 67  KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
           K+  ++D + ++ AGLTADA IL    R+   NY   + + +PV  L+  + +  Q  TQ
Sbjct: 64  KLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQ 123
Query: 127 RYDKRPYGVGLLVAGYDDA-GPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFP 185
               RP+GV  + AGYDD  G  +Y + PS NY   KA+++G+ + +A+T L+    D  
Sbjct: 124 HGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKD-- 181
Query: 186 EASLEEIVKHGLRALRDTLPNDSELT 211
           +  +++ ++  L+ L  T  + S LT
Sbjct: 182 DMKVDDAIELALKTLSKT-TDSSALT 206

>pdb|3OEU|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound 24 Length = 242

Iteration: 1
 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 107/223 (47%), Gaps = 7/223 (3%)
Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK--KI 68
           YD   +V+SP GR  QVEYA++AV+ G+ ++G+K     V    K   S+L   QK  KI
Sbjct: 2   YDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKI 61
Query: 69  IVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY 128
            V+D H+G  ++GL  D R L    R E  ++K  +K  +P+      +G  +Q  T   
Sbjct: 62  QVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYN 121
Query: 129 DKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEA- 187
             RP+GV  +  G D  G H+Y   PS +Y+  K  A G   QSA+  LEK +   PE  
Sbjct: 122 SVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGL 181
Query: 188 SLEEIVKHGLR----ALRDTLPNDSELTTKNVSIGLVGQNQKF 226
           S  E VK   +    A  D    D EL     S+       KF
Sbjct: 182 SAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKF 224

>pdb|1RYP|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 244

Iteration: 1
 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 107/223 (47%), Gaps = 7/223 (3%)
Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK--KI 68
           YD   +V+SP GR  QVEYA++AV+ G+ ++G+K     V    K   S+L   QK  KI
Sbjct: 4   YDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKI 63
Query: 69  IVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY 128
            V+D H+G  ++GL  D R L    R E  ++K  +K  +P+      +G  +Q  T   
Sbjct: 64  QVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYN 123
Query: 129 DKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEA- 187
             RP+GV  +  G D  G H+Y   PS +Y+  K  A G   QSA+  LEK +   PE  
Sbjct: 124 SVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGL 183
Query: 188 SLEEIVKHGLR----ALRDTLPNDSELTTKNVSIGLVGQNQKF 226
           S  E VK   +    A  D    D EL     S+       KF
Sbjct: 184 SAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKF 226

>pdb|4G4S|E Chain E, Structure Of Proteasome-Pba1-Pba2 Complex Length = 261

Iteration: 1
 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 125/241 (51%), Gaps = 15/241 (6%)
Query: 8   RNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ-- 65
           R++YD  V+ +SP+GRL QVEY++EA+K GS  +G+  K   V+   KRA S L      
Sbjct: 6   RSEYDRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSI 65
Query: 66  KKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGN------ 119
           +KI+ ID H+G + +GLTADAR +    R   + +   + + + V  L   V +      
Sbjct: 66  EKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFG 125
Query: 120 KMQVCTQRYDKRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLE 178
           +     +R   RP+GV LL+AG+D D G  ++   PS  +Y   A AIGS S+ A+  L 
Sbjct: 126 EGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAEL- 184
Query: 179 KRLADFPEA-SLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHY 237
             L ++  + +L+E     L+ L+  +  + +L   N  +  + +   FK  D  +T   
Sbjct: 185 --LNEWHSSLTLKEAELLVLKILKQVM--EEKLDENNAQLSCITKQDGFKIYDNEKTAEL 240
Query: 238 L 238
           +
Sbjct: 241 I 241

>pdb|1FNT|E Chain E, Crystal Structure Of The 20s Proteasome From Yeast In Complex With The Proteasome Activator Pa26 From Trypanosome Brucei At 3.2 Angstroms Resolution Length = 260

Iteration: 1
 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 125/241 (51%), Gaps = 15/241 (6%)
Query: 8   RNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ-- 65
           R++YD  V+ +SP+GRL QVEY++EA+K GS  +G+  K   V+   KRA S L      
Sbjct: 5   RSEYDRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSI 64
Query: 66  KKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGN------ 119
           +KI+ ID H+G + +GLTADAR +    R   + +   + + + V  L   V +      
Sbjct: 65  EKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFG 124
Query: 120 KMQVCTQRYDKRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLE 178
           +     +R   RP+GV LL+AG+D D G  ++   PS  +Y   A AIGS S+ A+  L 
Sbjct: 125 EGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAEL- 183
Query: 179 KRLADFPEA-SLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHY 237
             L ++  + +L+E     L+ L+  +  + +L   N  +  + +   FK  D  +T   
Sbjct: 184 --LNEWHSSLTLKEAELLVLKILKQVM--EEKLDENNAQLSCITKQDGFKIYDNEKTAEL 239
Query: 238 L 238
           +
Sbjct: 240 I 240

>pdb|1G0U|F Chain F, A Gated Channel Into The Proteasome Core Particle Length = 248

Iteration: 1
 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 107/223 (47%), Gaps = 7/223 (3%)
Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK--KI 68
           YD   +V+SP GR  QVEYA++AV+ G+ ++G+K     V    K   S+L   QK  KI
Sbjct: 8   YDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKI 67
Query: 69  IVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY 128
            V+D H+G  ++GL  D R L    R E  ++K  +K  +P+      +G  +Q  T   
Sbjct: 68  QVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYN 127
Query: 129 DKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEA- 187
             RP+GV  +  G D  G H+Y   PS +Y+  K  A G   QSA+  LEK +   PE  
Sbjct: 128 SVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGL 187
Query: 188 SLEEIVKHGLR----ALRDTLPNDSELTTKNVSIGLVGQNQKF 226
           S  E VK   +    A  D    D EL     S+       KF
Sbjct: 188 SAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKF 230

>pdb|1G0U|D Chain D, A Gated Channel Into The Proteasome Core Particle Length = 241

Iteration: 1
 Score =  114 bits (286), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 122/235 (51%), Gaps = 12/235 (5%)
Query: 8   RNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ-- 65
           R++YD  V+ +SP+GRL QVEY++EA+K GS  +G+  K   V+   KRA S L      
Sbjct: 5   RSEYDRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSI 64
Query: 66  KKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCT 125
           +KI+ ID H+G + +GLTADAR +    R   + +   + + + V  L   V +      
Sbjct: 65  EKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLAAAAA 124
Query: 126 QRYDKRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADF 184
                RP+GV LL+AG+D D G  ++   PS  +Y   A AIGS S+ A+  L   L ++
Sbjct: 125 M---SRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAEL---LNEW 178
Query: 185 PEA-SLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYL 238
             + +L+E     L+ L+  +  + +L   N  +  + +   FK  D  +T   +
Sbjct: 179 HSSLTLKEAELLVLKILKQVM--EEKLDENNAQLSCITKQDGFKIYDNEKTAELI 231

>pdb|1Z7Q|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast In Complex With The Proteasome Activator Pa26 From Trypanosome Brucei At 3.2 Angstroms Resolution Length = 288

Iteration: 1
 Score =  114 bits (286), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 107/223 (47%), Gaps = 7/223 (3%)
Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK--KI 68
           YD   +V+SP GR  QVEYA++AV+ G+ ++G+K     V    K   S+L   QK  KI
Sbjct: 8   YDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKI 67
Query: 69  IVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY 128
            V+D H+G  ++GL  D R L    R E  ++K  +K  +P+      +G  +Q  T   
Sbjct: 68  QVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYN 127
Query: 129 DKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEA- 187
             RP+GV  +  G D  G H+Y   PS +Y+  K  A G   QSA+  LEK +   PE  
Sbjct: 128 SVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGL 187
Query: 188 SLEEIVKHGLR----ALRDTLPNDSELTTKNVSIGLVGQNQKF 226
           S  E VK   +    A  D    D EL     S+       KF
Sbjct: 188 SAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKF 230

>pdb|2Z5C|C Chain C, Crystal Structure Of A Novel Chaperone Complex For Yeast 20s Proteasome Assembly Length = 262

Iteration: 1
 Score =  114 bits (286), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 125/241 (51%), Gaps = 15/241 (6%)
Query: 8   RNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ-- 65
           R++YD  V+ +SP+GRL QVEY++EA+K GS  +G+  K   V+   KRA S L      
Sbjct: 7   RSEYDRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSI 66
Query: 66  KKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGN------ 119
           +KI+ ID H+G + +GLTADAR +    R   + +   + + + V  L   V +      
Sbjct: 67  EKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFG 126
Query: 120 KMQVCTQRYDKRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLE 178
           +     +R   RP+GV LL+AG+D D G  ++   PS  +Y   A AIGS S+ A+  L 
Sbjct: 127 EGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAEL- 185
Query: 179 KRLADFPEA-SLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHY 237
             L ++  + +L+E     L+ L+  +  + +L   N  +  + +   FK  D  +T   
Sbjct: 186 --LNEWHSSLTLKEAELLVLKILKQVM--EEKLDENNAQLSCITKQDGFKIYDNEKTAEL 241
Query: 238 L 238
           +
Sbjct: 242 I 242

>pdb|1FNT|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast In Complex With The Proteasome Activator Pa26 From Trypanosome Brucei At 3.2 Angstroms Resolution Length = 287

Iteration: 1
 Score =  114 bits (286), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 107/223 (47%), Gaps = 7/223 (3%)
Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK--KI 68
           YD   +V+SP GR  QVEYA++AV+ G+ ++G+K     V    K   S+L   QK  KI
Sbjct: 7   YDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKI 66
Query: 69  IVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY 128
            V+D H+G  ++GL  D R L    R E  ++K  +K  +P+      +G  +Q  T   
Sbjct: 67  QVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYN 126
Query: 129 DKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEA- 187
             RP+GV  +  G D  G H+Y   PS +Y+  K  A G   QSA+  LEK +   PE  
Sbjct: 127 SVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGL 186
Query: 188 SLEEIVKHGLR----ALRDTLPNDSELTTKNVSIGLVGQNQKF 226
           S  E VK   +    A  D    D EL     S+       KF
Sbjct: 187 SAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKF 229

>pdb|1VSY|E Chain E, Proteasome Activator Complex Length = 250

Iteration: 1
 Score =  114 bits (286), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 125/241 (51%), Gaps = 15/241 (6%)
Query: 8   RNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ-- 65
           R++YD  V+ +SP+GRL QVEY++EA+K GS  +G+  K   V+   KRA S L      
Sbjct: 5   RSEYDRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSI 64
Query: 66  KKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGN------ 119
           +KI+ ID H+G + +GLTADAR +    R   + +   + + + V  L   V +      
Sbjct: 65  EKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFG 124
Query: 120 KMQVCTQRYDKRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLE 178
           +     +R   RP+GV LL+AG+D D G  ++   PS  +Y   A AIGS S+ A+  L 
Sbjct: 125 EGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAEL- 183
Query: 179 KRLADFPEA-SLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHY 237
             L ++  + +L+E     L+ L+  +  + +L   N  +  + +   FK  D  +T   
Sbjct: 184 --LNEWHSSLTLKEAELLVLKILKQVM--EEKLDENNAQLSCITKQDGFKIYDNEKTAEL 239
Query: 238 L 238
           +
Sbjct: 240 I 240

>pdb|1IRU|C Chain C, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 261

Iteration: 1
 Score =  111 bits (277), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 128/231 (55%), Gaps = 9/231 (3%)
Query: 10  QYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASEL---AAHQK 66
           +YDS  T++SP+GRL+QVEYAMEA+      +G+      ++ A +R   +L       +
Sbjct: 4   RYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSE 63
Query: 67  KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
           KI  +++ M  S AG+T+DA +L   +R+    Y   +++ +P  +L++ + +  Q  TQ
Sbjct: 64  KIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQ 123
Query: 127 RYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFP 185
              KRP+GV LL  G+D   G  +YQ+ PS NY   KA  IG+ S +A + L++   +  
Sbjct: 124 FGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKE-G 182
Query: 186 EASLEEIVKHGLRALRDTLPNDSELTTKNVSIG-LVGQNQK--FKTLDERE 233
           E +L+  +   ++ L  T+ + S+L+ + V I  L  +N K   + L ++E
Sbjct: 183 EMTLKSALALAIKVLNKTM-DVSKLSAEKVEIATLTRENGKTVIRVLKQKE 232

>pdb|3UNB|B Chain B, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 261

Iteration: 1
 Score =  110 bits (275), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 69/212 (32%), Positives = 119/212 (56%), Gaps = 6/212 (2%)
Query: 10  QYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASEL---AAHQK 66
           +YDS  T++SP+GRL+QVEYAMEA+      +G+      ++ A +R   +L       +
Sbjct: 4   RYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSE 63
Query: 67  KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
           KI  +++ M  S AG+T+DA +L   +R+    Y   +++ +P  +L++ + +  Q  TQ
Sbjct: 64  KIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQ 123
Query: 127 RYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFP 185
              KRP+GV LL  G+D   G  +YQ+ PS NY   KA  IG+ S +A + L++   +  
Sbjct: 124 FGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKE-G 182
Query: 186 EASLEEIVKHGLRALRDTLPNDSELTTKNVSI 217
           E +L+  +   ++ L  T+ + S+L+ + V I
Sbjct: 183 EMTLKSALALAVKVLNKTM-DVSKLSAEKVEI 213

>pdb|3OEU|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound 24 Length = 235

Iteration: 1
 Score =  110 bits (274), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 107/192 (55%), Gaps = 6/192 (3%)
Query: 16  TVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ---KKIIVID 72
           T++SP+GRL+QVEYA+E++      +G+      V+ A ++  S L       +K+  ++
Sbjct: 1   TIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLN 60
Query: 73  DHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRP 132
           D + ++ AGLTADA IL    R+   NY   + + +PV  L+  + +  Q  TQ    RP
Sbjct: 61  DKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRP 120
Query: 133 YGVGLLVAGYDDA-GPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEE 191
           +GV  + AGYDD  G  +Y + PS NY   KA+++G+ + +A+T L+    D  +  +++
Sbjct: 121 FGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKD--DMKVDD 178
Query: 192 IVKHGLRALRDT 203
            ++  L+ L  T
Sbjct: 179 AIELALKTLSKT 190

>pdb|1RYP|E Chain E, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 242

Iteration: 1
 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 121/237 (51%), Gaps = 15/237 (6%)
Query: 12  DSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ--KKII 69
           D  V+ +SP+GRL QVEY++EA+K GS  +G+  K   V+   KRA S L      +KI+
Sbjct: 1   DRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIV 60
Query: 70  VIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGN------KMQV 123
            ID H+G + +GLTADAR +    R   + +   + + + V  L   V +      +   
Sbjct: 61  EIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGAS 120
Query: 124 CTQRYDKRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLA 182
             +R   RP+GV LL+AG+D D G  ++   PS  +Y   A AIGS S+ A+  L   L 
Sbjct: 121 GEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAEL---LN 177
Query: 183 DFPEA-SLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYL 238
           ++  + +L+E     L+ L+  +  + +L   N  +  + +   FK  D  +T   +
Sbjct: 178 EWHSSLTLKEAELLVLKILKQVM--EEKLDENNAQLSCITKQDGFKIYDNEKTAELI 232

>pdb|1VSY|B Chain B, Proteasome Activator Complex Length = 231

Iteration: 1
 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 113/200 (56%), Gaps = 8/200 (4%)
Query: 26  QVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ--KKIIVIDDHMGLSFAGLT 83
           Q++YA+ AVKQG  ++G+K     VI   K+++S LA  +   K+ ++   +G  ++G+ 
Sbjct: 1   QIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMG 60
Query: 84  ADARILA-RFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGY 142
            D R+L  +  ++   +YK  + +  P   L+S V   MQ  TQ    RP+GV LL+AG+
Sbjct: 61  PDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGH 120
Query: 143 DD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALR 201
           D+  G  +YQ  PS +Y+  KA AIG  S +A+T+LEKR  D  E  LE+ +   L  L+
Sbjct: 121 DEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWND--ELELEDAIHIALLTLK 178
Query: 202 DTLPNDSELTTKNVSIGLVG 221
           +++  + E     + + ++G
Sbjct: 179 ESV--EGEFNGDTIELAIIG 196

>pdb|1VSY|C Chain C, Proteasome Activator Complex Length = 232

Iteration: 1
 Score =  106 bits (264), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 104/189 (55%), Gaps = 6/189 (3%)
Query: 19  SPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ---KKIIVIDDHM 75
           SP+GRL+QVEYA+E++      +G+      V+ A ++  S L       +K+  ++D +
Sbjct: 1   SPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKI 60
Query: 76  GLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGV 135
            ++ AGLTADA IL    R+   NY   + + +PV  L+  + +  Q  TQ    RP+GV
Sbjct: 61  AVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGV 120
Query: 136 GLLVAGYDDA-GPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVK 194
             + AGYDD  G  +Y + PS NY   KA+++G+ + +A+T L+    D  +  +++ ++
Sbjct: 121 SFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKD--DMKVDDAIE 178
Query: 195 HGLRALRDT 203
             L+ L  T
Sbjct: 179 LALKTLSKT 187

>pdb|1IRU|G Chain G, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 254

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 5/188 (2%)
Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASEL--AAHQKKI 68
           YD   + +SP GR+ QVEYAM+AV+  S  +G++ K   V    K   S+L      K++
Sbjct: 7   YDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRL 66
Query: 69  IVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY 128
             +D H+G++ AGL ADAR LA   R E  N++      +P+  L   V   +   T   
Sbjct: 67  FNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYS 126
Query: 129 DKRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEA 187
             RP+G   ++  Y  + G  +Y   PS   Y     AIG   Q+A+T +EK      E 
Sbjct: 127 AVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEK--LQMKEM 184
Query: 188 SLEEIVKH 195
           +  +IVK 
Sbjct: 185 TCRDIVKE 192

>pdb|3UNB|F Chain F, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 255

Iteration: 1
 Score = 94.4 bits (233), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 92/188 (48%), Gaps = 5/188 (2%)
Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASEL--AAHQKKI 68
           YD   + +SP GR+ QVEYAM+AV+  S  +G++ K   V    K   S+L      K++
Sbjct: 8   YDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRL 67
Query: 69  IVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY 128
             +D H+G++ AGL ADAR LA   R E  N++      +P+  L   V   +   T   
Sbjct: 68  FNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYS 127
Query: 129 DKRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEA 187
             RP+G   ++  Y  + G  +Y   PS   Y     AIG   Q+A+T +EK      E 
Sbjct: 128 AVRPFGCSFMLGSYSANDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEK--LQMKEM 185
Query: 188 SLEEIVKH 195
           +  ++VK 
Sbjct: 186 TCRDVVKE 193

>pdb|1G0U|G Chain G, A Gated Channel Into The Proteasome Core Particle Length = 252

Iteration: 1
 Score = 94.0 bits (232), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 111/228 (48%), Gaps = 12/228 (5%)
Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSA-TVGLKNKTHAVIIALKRAASEL--AAHQKK 67
           YD  +T++SP+GRL+QVEYA +A  Q +  ++ ++ K   V+I+ K+   +L        
Sbjct: 12  YDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSY 71
Query: 68  IIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQR 127
           I  I   +G+   G   DAR  A   + E   ++Y +   +P   L   + N  Q+ TQR
Sbjct: 72  IFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQR 131
Query: 128 YDKRPYGVGLLVAGYDDA-GPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEK-----RL 181
              RP GV L     D+  GP IY+T P+  Y   KA A G + Q   T LE      ++
Sbjct: 132 AYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKI 191
Query: 182 ADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTL 229
               E S E++V+  +  + D L   +E +  ++ +G V    KF TL
Sbjct: 192 DHINEESWEKVVEFAITHMIDAL--GTEFSKNDLEVG-VATKDKFFTL 236

>pdb|1RYP|A Chain A, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 243

Iteration: 1
 Score = 93.6 bits (231), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 111/228 (48%), Gaps = 12/228 (5%)
Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSA-TVGLKNKTHAVIIALKRAASEL--AAHQKK 67
           YD  +T++SP+GRL+QVEYA +A  Q +  ++ ++ K   V+I+ K+   +L        
Sbjct: 3   YDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSY 62
Query: 68  IIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQR 127
           I  I   +G+   G   DAR  A   + E   ++Y +   +P   L   + N  Q+ TQR
Sbjct: 63  IFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQR 122
Query: 128 YDKRPYGVGLLVAGYDDA-GPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEK-----RL 181
              RP GV L     D+  GP IY+T P+  Y   KA A G + Q   T LE      ++
Sbjct: 123 AYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKI 182
Query: 182 ADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTL 229
               E S E++V+  +  + D L   +E +  ++ +G V    KF TL
Sbjct: 183 DHINEESWEKVVEFAITHMIDAL--GTEFSKNDLEVG-VATKDKFFTL 227

>pdb|1J2Q|H Chain H, 20s Proteasome In Complex With Calpain-inhibitor I From Archaeoglobus Fulgidus Length = 202

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 88/178 (49%), Gaps = 16/178 (8%)
Query: 38  SATVGLKNKTHAVIIALKRA------ASELAAHQKKIIVIDDHMGLSFAGLTADARILAR 91
           + TVGL  K   V+   KRA      AS+ A   KKI  I D M ++ AG   DA+ LAR
Sbjct: 1   TTTVGLVCKDGVVMATEKRATMGNFIASKAA---KKIYQIADRMAMTTAGSVGDAQFLAR 57
Query: 92  FMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQ 151
            +++E   Y+   ++  P  R I+ + + + + + RY   PY V LL+ G D  G  IY 
Sbjct: 58  IIKIEANLYEI-RRERKPTVRAIATLTSNL-LNSYRY--FPYLVQLLIGGIDSEGKSIYS 113
Query: 152 TCPSSNYYDVK-AMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDS 208
             P     + K  +A GS S +A   LE R    PE  ++E V+  +RA+   +  DS
Sbjct: 114 IDPIGGAIEEKDIVATGSGSLTAYGVLEDRFT--PEIGVDEAVELAVRAIYSAMKRDS 169

>pdb|1YA7|H Chain H, Implications For Interactions Of Proteasome With Pan And Pa700 From The 1.9 A Structure Of A Proteasome-11s Activator Complex Length = 217

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 91/181 (50%), Gaps = 12/181 (6%)
Query: 32  EAVKQGSATVGLKNKTHAVIIALKRAAS--ELAAHQ--KKIIVIDDHMGLSFAGLTADAR 87
           + ++ G+ TVG+  K  AVI+A +R  +      H+  KK+  ID + G++ AGL  DA+
Sbjct: 3   QTLETGTTTVGITLK-DAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQ 61
Query: 88  ILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGP 147
           +L R+M+ E   Y+   +  +P+  + +++ N +     +    PY V LLV G D A P
Sbjct: 62  VLVRYMKAELELYRLQRRVNMPIEAVATLLSNML----NQVKYMPYMVQLLVGGIDTA-P 116
Query: 148 HIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPND 207
           H++    +    +    + GS S      LE + ++  + +++E V   +RA+      D
Sbjct: 117 HVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSE--KMTVDEGVDLVIRAISAAKQRD 174
Query: 208 S 208
           S
Sbjct: 175 S 175

>pdb|1PMA|B Chain B, Proteasome From Thermoplasma Acidophilum Length = 211

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 91/181 (50%), Gaps = 12/181 (6%)
Query: 32  EAVKQGSATVGLKNKTHAVIIALKRAAS--ELAAHQ--KKIIVIDDHMGLSFAGLTADAR 87
           + ++ G+ TVG+  K  AVI+A +R  +      H+  KK+  ID + G++ AGL  DA+
Sbjct: 3   QTLETGTTTVGITLK-DAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQ 61
Query: 88  ILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGP 147
           +L R+M+ E   Y+   +  +P+  + +++ N +     +    PY V LLV G D A P
Sbjct: 62  VLVRYMKAELELYRLQRRVNMPIEAVATLLSNML----NQVKYMPYMVQLLVGGIDTA-P 116
Query: 148 HIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPND 207
           H++    +    +    + GS S      LE + ++  + +++E V   +RA+      D
Sbjct: 117 HVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSE--KMTVDEGVDLVIRAISAAKQRD 174
Query: 208 S 208
           S
Sbjct: 175 S 175

>pdb|3C91|H Chain H, Thermoplasma Acidophilum 20s Proteasome With An Open Gate Length = 203

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 87/175 (49%), Gaps = 12/175 (6%)
Query: 38  SATVGLKNKTHAVIIALKRAAS--ELAAHQ--KKIIVIDDHMGLSFAGLTADARILARFM 93
           + TVG+  K  AVI+A +R  +      H+  KK+  ID + G++ AGL  DA++L R+M
Sbjct: 1   TTTVGITLK-DAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYM 59
Query: 94  RMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTC 153
           + E   Y+   +  +P+  + +++ N +     +    PY V LLV G D A PH++   
Sbjct: 60  KAELELYRLQRRVNMPIEAVATLLSNML----NQVKYMPYMVQLLVGGIDTA-PHVFSID 114
Query: 154 PSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDS 208
            +    +    + GS S      LE + ++  + +++E V   +RA+      DS
Sbjct: 115 AAGGSVEDIYASTGSGSPFVYGVLESQYSE--KMTVDEGVDLVIRAISAAKQRDS 167

>pdb|3H4P|AA Chain a, Proteasome 20s Core Particle From Methanocaldococcus Jannaschii Length = 219

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 90/192 (46%), Gaps = 14/192 (7%)
Query: 38  SATVGLKNKTHAVIIALKRAA-SELAAHQ--KKIIVIDDHMGLSFAGLTADARILARFMR 94
           + TVGL      ++   KRA+   L A +  KK+  IDD++ ++ AG   DA+ + R + 
Sbjct: 2   TTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLI 61
Query: 95  MECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYD-DAGPHIYQTC 153
            E   YK      +P     +++ N +   ++ +   P+   +++ GYD   G  ++   
Sbjct: 62  AEAKLYKMRTGRNIPPLACATLLSNILH-SSRMF---PFLTQIIIGGYDLLEGAKLFSLD 117
Query: 154 PSSNYYDVKAM-AIGSRSQSARTYLEKRLADFP-EASLEEIVKHGLRALRDTLPNDSELT 211
           P     + K   A GS S  A   LE   A +  + S+EE +K  L AL+  +  D+  +
Sbjct: 118 PLGGMNEEKTFTATGSGSPIAYGVLE---AGYDRDMSVEEGIKLALNALKSAMERDT-FS 173
Query: 212 TKNVSIGLVGQN 223
              +S+ ++ ++
Sbjct: 174 GNGISLAVITKD 185

>pdb|3UNB|K Chain K, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 205

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 8/136 (5%)
Query: 48  HAVIIALKRAASELA--AHQ--KKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYA 103
           H VI+A    A+  A  A Q  KK+I I+ ++  + AG  AD     R +  +C  Y+  
Sbjct: 10  HGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELR 69
Query: 104 HKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKA 163
           +K+ + V     ++ N +     +Y      +G ++ G+D  GP +Y      N     A
Sbjct: 70  NKERISVAAASKLLANMVY----QYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGTA 125
Query: 164 MAIGSRSQSARTYLEK 179
            ++GS S  A   +++
Sbjct: 126 FSVGSGSVYAYGVMDR 141

>pdb|1IRU|L Chain L, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 204

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 8/136 (5%)
Query: 48  HAVIIALKRAASELA--AHQ--KKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYA 103
           H VI+A    A+  A  A Q  KK+I I+ ++  + AG  AD     R +  +C  Y+  
Sbjct: 10  HGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELR 69
Query: 104 HKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKA 163
           +K+ + V     ++ N +     +Y      +G ++ G+D  GP +Y      N      
Sbjct: 70  NKERISVAAASKLLANMVY----QYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGAT 125
Query: 164 MAIGSRSQSARTYLEK 179
            ++GS S  A   +++
Sbjct: 126 FSVGSGSVYAYGVMDR 141

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	251
1iru_F	263	20S proteasome; cell cycle, immune response, prote	1e-125
1ryp_F	233	20S proteasome; multicatalytic proteinase, protein	1e-114
1iru_E	241	20S proteasome; cell cycle, immune response, prote	1e-111
1iru_D	248	20S proteasome; cell cycle, immune response, prote	1e-110
1iru_A	246	20S proteasome; cell cycle, immune response, prote	1e-109
1iru_B	233	20S proteasome; cell cycle, immune response, prote	1e-108
1ryp_A	243	20S proteasome; multicatalytic proteinase, protein	1e-106
1ryp_D	241	20S proteasome; multicatalytic proteinase, protein	1e-104
1ryp_B	250	20S proteasome; multicatalytic proteinase, protein	1e-103
1yar_A	233	Proteasome alpha subunit; proteasome 20S, PA26 pro	1e-102
1iru_C	261	20S proteasome; cell cycle, immune response, prote	1e-102
1ryp_G	244	20S proteasome; multicatalytic proteinase, protein	1e-101
3h4p_A	264	Proteasome subunit alpha; core particle, cytoplasm	1e-101
1ryp_E	242	20S proteasome; multicatalytic proteinase, protein	1e-101
3nzj_F	288	Proteasome component C1; ubiquitin, protein degrad	1e-101
1j2p_A	246	Alpha-ring, proteasome alpha subunit; hydrolase; 2	2e-99
1ryp_C	244	20S proteasome; multicatalytic proteinase, protein	3e-98
1iru_G	254	20S proteasome; cell cycle, immune response, prote	7e-96
3mi0_A	248	Proteasome subunit alpha; enzyme inhibitors, lacto	7e-54
1q5q_A	259	Proteasome alpha-type subunit 1; proteasome assemb	2e-47
3nzj_H	261	Proteasome component PUP1; ubiquitin, protein degr	2e-33
1yar_H	217	Proteasome beta subunit; proteasome 20S, PA26 prot	4e-32
3unf_H	234	Proteasome subunit beta type-10; antigen presentat	1e-30
1ryp_I	222	20S proteasome; multicatalytic proteinase, protein	5e-29
1iru_I	234	20S proteasome; cell cycle, immune response, prote	3e-27
1q5r_H	294	Proteasome beta-type subunit 1; proteasome assembl	3e-25
3nzj_K	287	Proteasome component PRE2; ubiquitin, protein degr	3e-24
1iru_L	204	20S proteasome; cell cycle, immune response, prote	5e-24
1j2q_H	202	Proteasome beta subunit; ubiquitin, CP, hydrolase;	2e-22
1ryp_L	212	20S proteasome; multicatalytic proteinase, protein	3e-22
2jay_A	291	Proteasome; hydrolase; 1.99A {Mycobacterium tuberc	4e-22
1q5q_H	235	Proteasome beta-type subunit 1; proteasome assembl	2e-21
1q5q_H	235	Proteasome beta-type subunit 1; proteasome assembl	5e-20
1iru_N	219	20S proteasome; cell cycle, immune response, prote	4e-19
3unf_N	199	Proteasome subunit beta type-9; antigen presentati	1e-18
1iru_H	205	20S proteasome; cell cycle, immune response, prote	2e-18
1ryp_K	198	20S proteasome; multicatalytic proteinase, protein	4e-18
1ryp_H	205	20S proteasome; multicatalytic proteinase, protein	3e-17
1iru_K	201	20S proteasome; cell cycle, immune response, prote	5e-17
1iru_M	213	20S proteasome; cell cycle, immune response, prote	2e-16
1g0u_M	266	Proteasome component PRE4; ubiquitin, degradation,	2e-16
1ryp_N	233	20S proteasome; multicatalytic proteinase, protein	4e-16
1ryp_M	222	20S proteasome; multicatalytic proteinase, protein	8e-16
1iru_J	205	20S proteasome; cell cycle, immune response, prote	9e-16
1ryp_J	204	20S proteasome; multicatalytic proteinase, protein	2e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06

>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E Length = 263

 Score =  356 bits (915), Expect = e-125
 Identities = 158/241 (65%), Positives = 204/241 (84%)

Query: 7   FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK 66
           FRNQYD+DVTVWSPQGR+HQ+EYAMEAVKQGSATVGLK+KTHAV++ALKRA SELAAHQK
Sbjct: 2   FRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQK 61

Query: 67  KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
           KI+ +D+H+G+S AGLTADAR+L  FMR ECL+ ++     LPV RL+S++G+K Q+ TQ
Sbjct: 62  KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQ 121

Query: 127 RYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 186
           RY +RPYGVGLL+AGYDD GPHI+QTCPS+NY+D +AM+IG+RSQSARTYLE+ +++F E
Sbjct: 122 RYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFME 181

Query: 187 ASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEER 246
            +L E+VKHGLRALR+TLP + +LTTKNVSIG+VG++ +F   D+ +   +L  +E   +
Sbjct: 182 CNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERPQ 241

Query: 247 R 247
           R
Sbjct: 242 R 242

>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ... Length = 233

 Score =  325 bits (835), Expect = e-114
 Identities = 110/234 (47%), Positives = 151/234 (64%), Gaps = 3/234 (1%)

Query: 7   FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK 66
           FRN YD D   +SP GRL QVEYA+EA+KQGS TVGL++ THAV++ALKR A EL+++QK
Sbjct: 1   FRNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELSSYQK 60

Query: 67  KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
           KII  D+HMGLS AGL  DAR+L+ ++R +C          L V R   ++ +K Q  TQ
Sbjct: 61  KIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQ 120

Query: 127 RYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADF-- 184
            Y  RPYGVGLL+ GYD +G H+ +  PS N  ++   AIG+RSQ A+TYLE+ L  F  
Sbjct: 121 SYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIK 180

Query: 185 PEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYL 238
            + + +E++K G+ A+  +L  D  LT  N+SI +VG++  F   D      Y+
Sbjct: 181 IDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDTPFTIYDGEAVAKYI 233

>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D Length = 241

 Score =  320 bits (822), Expect = e-111
 Identities = 74/242 (30%), Positives = 120/242 (49%), Gaps = 11/242 (4%)

Query: 7   FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASEL--AAH 64
            R++YD  V  +SP+GRL QVEY +EA+K GS  +G++      +   KR  S L   + 
Sbjct: 4   TRSEYDRGVNTFSPEGRLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSS 63

Query: 65  QKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVC 124
            +KI+ ID H+G + +GL ADA+ L    R+E  N+ + + +T+ V  +   V N     
Sbjct: 64  IEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQF 123

Query: 125 TQRYDK-----RPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEK 179
            +         RP+GV LL  G D+ GP ++   PS  +    A AIGS S+ A++ L++
Sbjct: 124 GEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQE 183

Query: 180 RLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLS 239
                   +L+E +K  L  L+  +  + +L   N+ +  V   Q F    + E    + 
Sbjct: 184 LY--HKSMTLKEAIKSSLIILKQVM--EEKLNATNIELATVQPGQNFHMFTKEELEEVIK 239

Query: 240 LI 241
            I
Sbjct: 240 DI 241

>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C* Length = 248

 Score =  316 bits (811), Expect = e-110
 Identities = 84/240 (35%), Positives = 140/240 (58%), Gaps = 7/240 (2%)

Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ--KKI 68
           YD  +TV+SP G L QVEYA EAVK+GS  VG++ +   V+   K++ ++L   +  +KI
Sbjct: 3   YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKI 62

Query: 69  IVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY 128
             +DD++ ++FAGLTADARI+    R+EC +++   +D + V  +   + +  Q  TQ  
Sbjct: 63  CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 122

Query: 129 DKRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEA 187
            +RP+G+  L+ G+D D  P +YQT PS  Y+  KA AIG  ++S R +LEK   D    
Sbjct: 123 GRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIE 182

Query: 188 SLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEERR 247
           + +  +K  ++AL + +    +   KN+ + ++ ++Q  K L+  E   Y++ IE E+  
Sbjct: 183 TDDLTIKLVIKALLEVV----QSGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKEKEE 238

>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G Length = 246

 Score =  312 bits (803), Expect = e-109
 Identities = 72/247 (29%), Positives = 126/247 (51%), Gaps = 10/247 (4%)

Query: 7   FRNQ---YDSDVTVWSPQGRLHQVEYAMEAVKQGSAT-VGLKNKTHAVIIALKRAASEL- 61
            R     +D  +T++SP+GRL+QVEYA +A+ QG  T V ++ K  AVI+  K+   +L 
Sbjct: 2   SRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLL 61

Query: 62  -AAHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNK 120
            ++    +  I +++G    G+TAD+R   +  R E  N+KY +   +PV  L   + + 
Sbjct: 62  DSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADI 121

Query: 121 MQVCTQRYDKRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEK 179
            QV TQ  + RP G  +++ G D + GP +Y+  P+  Y   KA A G +   + ++LEK
Sbjct: 122 SQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEK 181

Query: 180 RLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQ-KFKTLDERETGHYL 238
           ++    + + E+ V+  +  L   L    +     + +G+V     KF+ L E E   +L
Sbjct: 182 KVKKKFDWTFEQTVETAITCLSTVL--SIDFKPSEIEVGVVTVENPKFRILTEAEIDAHL 239

Query: 239 SLIEGEE 245
             +   +
Sbjct: 240 VALAERD 246

>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A Length = 233

 Score =  311 bits (800), Expect = e-108
 Identities = 71/236 (30%), Positives = 125/236 (52%), Gaps = 7/236 (2%)

Query: 8   RNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ-- 65
              Y   +T +SP G+L Q+EYA+ AV  G+ +VG+K     V+   K+  S L   +  
Sbjct: 2   ERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSV 61

Query: 66  KKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCT 125
            K+  I  H+GL ++G+  D R+L    R     Y   +++ +P  +L+  V + MQ  T
Sbjct: 62  HKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYT 121

Query: 126 QRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFP 185
           Q    RP+GV LL+ G+++  P+++Q+ PS  Y+  KA A+G    + +T+LEKR     
Sbjct: 122 QSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRY--NE 179

Query: 186 EASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLI 241
           +  LE+ +   +  L+++   + ++T  N+ +G+  +   F+ L   E   YL+ I
Sbjct: 180 DLELEDAIHTAILTLKESF--EGQMTEDNIEVGICNEA-GFRRLTPTEVKDYLAAI 232

>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ... Length = 243

 Score =  305 bits (783), Expect = e-106
 Identities = 72/244 (29%), Positives = 114/244 (46%), Gaps = 12/244 (4%)

Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSAT-VGLKNKTHAVIIALKRAASEL--AAHQKK 67
           YD  +T++SP+GRL+QVEYA +A  Q +   + ++ K   V+I+ K+   +L        
Sbjct: 3   YDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSY 62

Query: 68  IIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQR 127
           I  I   +G+   G   DAR  A   + E   ++Y +   +P   L   + N  Q+ TQR
Sbjct: 63  IFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQR 122

Query: 128 YDKRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRL----- 181
              RP GV L     D + GP IY+T P+  Y   KA A G + Q   T LE        
Sbjct: 123 AYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKI 182

Query: 182 ADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLI 241
               E S E++V+  +  + D L   +E +  ++ +G+  ++ KF TL        L  I
Sbjct: 183 DHINEESWEKVVEFAITHMIDAL--GTEFSKNDLEVGVATKD-KFFTLSAENIEERLVAI 239

Query: 242 EGEE 245
             ++
Sbjct: 240 AEQD 243

>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ... Length = 241

 Score =  301 bits (774), Expect = e-104
 Identities = 87/243 (35%), Positives = 132/243 (54%), Gaps = 10/243 (4%)

Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ---KK 67
           YD  ++++SP G + QVEYA+EAVK+G+  VG+K K   V+   +R+  +L   +    K
Sbjct: 2   YDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSK 61

Query: 68  IIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQR 127
           +  ID H+ LSF+GL AD+RIL    R+E  +++   +D + V  L   V    Q  TQ 
Sbjct: 62  VSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQS 121

Query: 128 YDKRPYGVGLLVAGYD--DAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRL-ADF 184
              RP+GV  L+AG+D  D  P +YQT PS  Y    A  IG  S++ R +LEK      
Sbjct: 122 GGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKE 181

Query: 185 PEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGE 244
           P A++EE VK  +R+L + +    +   KN+ I +V  +     L   E   Y++ IE E
Sbjct: 182 PPATVEECVKLTVRSLLEVV----QTGAKNIEITVVKPDSDIVALSSEEINQYVTQIEQE 237

Query: 245 ERR 247
           ++ 
Sbjct: 238 KQE 240

>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ... Length = 250

 Score =  298 bits (766), Expect = e-103
 Identities = 76/252 (30%), Positives = 128/252 (50%), Gaps = 23/252 (9%)

Query: 9   NQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASEL--AAHQK 66
           ++Y   +T +SP G+L Q++YA+ AVKQG  ++G+K     VI   K+++S L  +    
Sbjct: 3   DRYSFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLS 62

Query: 67  KIIVIDDHMGLSFAGLTADARILARFMRMEC-LNYKYAHKDTLPVFRLISIVGNKMQVCT 125
           K+ ++   +G  ++G+  D R+L    R     +YK  + +  P   L+S V   MQ  T
Sbjct: 63  KVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEAT 122

Query: 126 QRYDKRPYGVGLLVAGYDDA-GPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADF 184
           Q    RP+GV LL+AG+D+  G  +YQ  PS +Y+  KA AIG  S +A+T+LEKR    
Sbjct: 123 QSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRW--N 180

Query: 185 PEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQ---------------KFKTL 229
            E  LE+ +   L  L++++  + E     + + ++G                  +F+ L
Sbjct: 181 DELELEDAIHIALLTLKESV--EGEFNGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKL 238

Query: 230 DERETGHYLSLI 241
             +E    L  +
Sbjct: 239 TSQEINDRLEAL 250

>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A Length = 233

 Score =  296 bits (759), Expect = e-102
 Identities = 78/233 (33%), Positives = 121/233 (51%), Gaps = 6/233 (2%)

Query: 8   RNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ-- 65
           +  Y   +TV+SP GRL QVEYA EAVK+GS  +G+K     ++I+ K+  S L      
Sbjct: 5   QMAYSRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSI 64

Query: 66  KKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCT 125
           +KI +IDD++    +GL ADAR+L  F R+     K  +   + +  L+  V ++MQ  T
Sbjct: 65  EKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYT 124

Query: 126 QRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFP 185
           Q    RPYGV L+ AG D  GP ++   P+    + KA AIGS   +  ++LE+      
Sbjct: 125 QYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREY--KE 182

Query: 186 EASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYL 238
               +E V  G++AL+ +L  +     K   I  +    K++  D+ E   +L
Sbjct: 183 NLPEKEAVTLGIKALKSSL--EEGEELKAPEIASITVGNKYRIYDQEEVKKFL 233

>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B Length = 261

 Score =  296 bits (759), Expect = e-102
 Identities = 74/246 (30%), Positives = 130/246 (52%), Gaps = 9/246 (3%)

Query: 9   NQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASEL---AAHQ 65
            +YDS  T++SP+GRL+QVEYAMEA+      +G+      ++ A +R   +L       
Sbjct: 3   RRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFS 62

Query: 66  KKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCT 125
           +KI  +++ M  S AG+T+DA +L   +R+    Y   +++ +P  +L++ + +  Q  T
Sbjct: 63  EKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYT 122

Query: 126 QRYDKRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADF 184
           Q   KRP+GV LL  G+D   G  +YQ+ PS NY   KA  IG+ S +A + L++     
Sbjct: 123 QFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDY-KE 181

Query: 185 PEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQK---FKTLDERETGHYLSLI 241
            E +L+  +   ++ L  T+ + S+L+ + V I  + +       + L ++E    +   
Sbjct: 182 GEMTLKSALALAIKVLNKTM-DVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKKH 240

Query: 242 EGEERR 247
           E EE +
Sbjct: 241 EEEEAK 246

>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ... Length = 244

 Score =  294 bits (755), Expect = e-101
 Identities = 76/241 (31%), Positives = 109/241 (45%), Gaps = 9/241 (3%)

Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ--KKI 68
           YD   +V+SP GR  QVEYA++AV+ G+ ++G+K     V    K   S+L   Q   KI
Sbjct: 4   YDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKI 63

Query: 69  IVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY 128
            V+D H+G  ++GL  D R L    R E  ++K  +K  +P+      +G  +Q  T   
Sbjct: 64  QVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYN 123

Query: 129 DKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEA- 187
             RP+GV  +  G D  G H+Y   PS +Y+  K  A G   QSA+  LEK +   PE  
Sbjct: 124 SVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGL 183

Query: 188 SLEEIVKHGLRA----LRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEG 243
           S  E VK   +       D    D EL     S+     N   K +        +   + 
Sbjct: 184 SAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLS--ETNGLHKFVKGDLLQEAIDFAQK 241

Query: 244 E 244
           E
Sbjct: 242 E 242

>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii} Length = 264

 Score =  295 bits (757), Expect = e-101
 Identities = 74/243 (30%), Positives = 127/243 (52%), Gaps = 8/243 (3%)

Query: 7   FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ- 65
             + YD  +TV+SP+GRL+QVEYA EAV++G+  +G+  K   V+   +R  S+L   + 
Sbjct: 8   PPSAYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRS 67

Query: 66  -KKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVC 124
            +KI  IDDH+  + +GL ADAR+L    R+E   Y+  + + + +  L   + +  Q  
Sbjct: 68  IEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAY 127

Query: 125 TQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADF 184
           TQ    RP+GV LL+AG D     +++T PS    + KA AIGS        LEK     
Sbjct: 128 TQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEY--R 185

Query: 185 PEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQ-NQKFKTLDERETGHYLSLIEG 243
            + +L+E ++  + AL      + ++  +NV + ++   + +FK +   E    +  ++ 
Sbjct: 186 DDITLDEGLELAITALTKA---NEDIKPENVDVCIITVKDAQFKKIPVEEIKKLIEKVKK 242

Query: 244 EER 246
           +  
Sbjct: 243 KLN 245

>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ... Length = 242

 Score =  293 bits (753), Expect = e-101
 Identities = 75/243 (30%), Positives = 121/243 (49%), Gaps = 13/243 (5%)

Query: 12  DSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASEL--AAHQKKII 69
           D  V+ +SP+GRL QVEY++EA+K GS  +G+  K   V+   KRA S L  +   +KI+
Sbjct: 1   DRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIV 60

Query: 70  VIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ--- 126
            ID H+G + +GLTADAR +    R   + +   + + + V  L   V +      +   
Sbjct: 61  EIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGAS 120

Query: 127 ---RYDKRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLA 182
              R   RP+GV LL+AG+D D G  ++   PS  +Y   A AIGS S+ A+  L     
Sbjct: 121 GEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEW- 179

Query: 183 DFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIE 242
                +L+E     L+ L+  +  + +L   N  +  + +   FK  D  +T   +  ++
Sbjct: 180 -HSSLTLKEAELLVLKILKQVM--EEKLDENNAQLSCITKQDGFKIYDNEKTAELIKELK 236

Query: 243 GEE 245
            +E
Sbjct: 237 EKE 239

>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F* Length = 288

 Score =  295 bits (757), Expect = e-101
 Identities = 77/241 (31%), Positives = 111/241 (46%), Gaps = 9/241 (3%)

Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK--KI 68
           YD   +V+SP GR  QVEYA++AV+ G+ ++G+K     V    K   S+L   QK  KI
Sbjct: 8   YDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKI 67

Query: 69  IVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY 128
            V+D H+G  ++GL  D R L    R E  ++K  +K  +P+      +G  +Q  T   
Sbjct: 68  QVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYN 127

Query: 129 DKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEA- 187
             RP+GV  +  G D  G H+Y   PS +Y+  K  A G   QSA+  LEK +   PE  
Sbjct: 128 SVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGL 187

Query: 188 SLEEIVKHGLRAL----RDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEG 243
           S  E VK   + +     D    D EL     S+     N   K +        +   + 
Sbjct: 188 SAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSET--NGLHKFVKGDLLQEAIDFAQK 245

Query: 244 E 244
           E
Sbjct: 246 E 246

>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A* Length = 246

 Score =  289 bits (741), Expect = 2e-99
 Identities = 82/242 (33%), Positives = 128/242 (52%), Gaps = 8/242 (3%)

Query: 8   RNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ-- 65
           +  YD  +TV+SP GRL QVEYA EAVK+G+  +G+K K   ++IA KR  S+L      
Sbjct: 5   QMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTI 64

Query: 66  KKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCT 125
           +KI  ID+H+  + +GL ADAR+L    R+E    +  +   + V  L   + +  Q  T
Sbjct: 65  EKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYT 124

Query: 126 QRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFP 185
           Q    RP+GV LL+AG ++  P +Y+T PS    + KA AIG    +   + EK      
Sbjct: 125 QYGGVRPFGVSLLIAGVNE-VPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEY--RD 181

Query: 186 EASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVG-QNQKFKTLDERETGHYLSLIEGE 244
           + S ++ +  GL A+  ++  +SEL  +N+ +G V   ++ FK +   E   Y+      
Sbjct: 182 DLSFDDAMVLGLVAMGLSI--ESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANER 239

Query: 245 ER 246
            R
Sbjct: 240 IR 241

>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ... Length = 244

 Score =  286 bits (733), Expect = 3e-98
 Identities = 70/239 (29%), Positives = 121/239 (50%), Gaps = 12/239 (5%)

Query: 9   NQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASEL---AAHQ 65
            +YDS  T++SP+GRL+QVEYA+E++      +G+      V+ A ++  S L       
Sbjct: 3   RRYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTST 62

Query: 66  KKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCT 125
           +K+  ++D + ++ AGLTADA IL    R+   NY   + + +PV  L+  + +  Q  T
Sbjct: 63  EKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYT 122

Query: 126 QRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADF 184
           Q    RP+GV  + AGYDD  G  +Y + PS NY   KA+++G+ + +A+T L+      
Sbjct: 123 QHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDY--K 180

Query: 185 PEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQ-----KFKTLDERETGHYL 238
            +  +++ ++  L+ L  T  + S LT   +    + +         K    +E    L
Sbjct: 181 DDMKVDDAIELALKTLSKTT-DSSALTYDRLEFATIRKGANDGEVYQKIFKPQEIKDIL 238

>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F Length = 254

 Score =  280 bits (718), Expect = 7e-96
 Identities = 64/232 (27%), Positives = 104/232 (44%), Gaps = 7/232 (3%)

Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASEL--AAHQKKI 68
           YD   + +SP GR+ QVEYAM+AV+  S  +G++ K   V    K   S+L      K++
Sbjct: 7   YDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRL 66

Query: 69  IVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY 128
             +D H+G++ AGL ADAR LA   R E  N++      +P+  L   V   +   T   
Sbjct: 67  FNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYS 126

Query: 129 DKRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEA 187
             RP+G   ++  Y  + G  +Y   PS   Y     AIG   Q+A+T +EK      E 
Sbjct: 127 AVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQ--MKEM 184

Query: 188 SLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVG-QNQKFKTLDERETGHYL 238
           +  +IVK   + +     ++ +     + +  VG        +  ++     
Sbjct: 185 TCRDIVKEVAKIIYIVH-DEVKDKAFELELSWVGELTNGRHEIVPKDIREEA 235

>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D Length = 248

 Score =  173 bits (439), Expect = 7e-54
 Identities = 45/244 (18%), Positives = 89/244 (36%), Gaps = 21/244 (8%)

Query: 19  SPQGRLHQ-VEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGL 77
           SP+  + +  E A + + +  + V L      + +A   + S      +KI  + D +G 
Sbjct: 8   SPEQAMRERSELARKGIARAKSVVALAYAGGVLFVAENPSRS-----LQKISELYDRVGF 62

Query: 78  SFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGL 137
           + AG   +   L R          YA+       R ++ V  +          +PY V L
Sbjct: 63  AAAGKFNEFDNLRRGGIQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFTEQAKPYEVEL 122

Query: 138 LVAGY----DDAGPHIYQTCPSSNYYDV-KAMAIGSRSQSARTYLEKRLADFPEASLEEI 192
            VA      +   P +Y+     +  D    + +G  ++     L++  A    ASL + 
Sbjct: 123 CVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIANALKESYA--ENASLTDA 180

Query: 193 VKHGLRALRDTLPNDS-----ELTTKNVSIGLVGQNQ---KFKTLDERETGHYLSLIEGE 244
           ++  + ALR    + S      L   ++ + ++  N+    F+ +        L   E  
Sbjct: 181 LRIAVAALRAGSADTSGGDQPTLGVASLEVAVLDANRPRRAFRRITGSALQALLVDQESP 240

Query: 245 ERRG 248
           +  G
Sbjct: 241 QSDG 244

>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A Length = 259

 Score =  157 bits (398), Expect = 2e-47
 Identities = 34/247 (13%), Positives = 86/247 (34%), Gaps = 23/247 (9%)

Query: 19  SPQGRLHQ-VEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGL 77
           S +  +    E A + + +G + V L  +   + +A   + +       K+  + D +G 
Sbjct: 8   SAEQIMRDRSELARKGIARGRSVVVLTFRDGVLFVAENPSTA-----LHKVSELYDRLGF 62

Query: 78  SFAGLTADARILARFMRMECLNYKYAH-KDTLPVFRLISIVGNKM-QVCTQRYDKRPYGV 135
           +  G   +   L R   +      Y++ +  +    L +     +  + T++   +PY V
Sbjct: 63  AAVGKYNEFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQP--KPYEV 120

Query: 136 GLLVAG----YDDAGPHIYQTCPSSNYYDVK-AMAIGSRSQSARTYLEKRLADFPEASLE 190
            + VA          P +Y+     +  D +  + +G  ++   T + +      +  LE
Sbjct: 121 EICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYR--ADLDLE 178

Query: 191 EIVKHGLRALRDTLPNDS---ELTTKNVSIGLVGQNQ---KFKTLDERETGHYLSLIEGE 244
             V   + ALR     +     +   ++ + ++ Q++    F+ +        +      
Sbjct: 179 AAVGIAVNALRQGGAGEGEKRNVDVASLEVAVLDQSRPRRAFRRIAGTALEQLVPAEPAA 238

Query: 245 ERRGGGG 251
                  
Sbjct: 239 ASESAPE 245

>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* Length = 261

 Score =  120 bits (304), Expect = 2e-33
 Identities = 43/220 (19%), Positives = 84/220 (38%), Gaps = 12/220 (5%)

Query: 19  SPQGRLHQVEYAM-EAVKQGSATVGLKNKTHAVIIALKRA-ASELAAHQ--KKIIVIDDH 74
                L +  +   +A   G+  VG+K     VI A  R+    + A +   K+  I   
Sbjct: 10  QRNNFLAENSHTQPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPK 69

Query: 75  MGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYG 134
           +  + AG  AD   + + +      +         V   + ++   +     +Y +   G
Sbjct: 70  IWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLF----KY-QGHIG 124

Query: 135 VGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVK 194
             L+VAG D  G H++      +      +++GS S +A   LE       + + EE +K
Sbjct: 125 AYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWK--QDLTKEEAIK 182

Query: 195 HGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERET 234
               A++  + ND   +  NV + ++   +  + L    T
Sbjct: 183 LASDAIQAGIWNDL-GSGSNVDVCVMEIGKDAEYLRNYLT 221

>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H Length = 217

 Score =  116 bits (292), Expect = 4e-32
 Identities = 50/211 (23%), Positives = 98/211 (46%), Gaps = 13/211 (6%)

Query: 32  EAVKQGSATVGLKNKTHAVIIAL-KRA-ASELAAHQ--KKIIVIDDHMGLSFAGLTADAR 87
           + ++ G+ TVG+  K  AVI+A  +R        H+  KK+  ID + G++ AGL  DA+
Sbjct: 3   QTLETGTTTVGITLK-DAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQ 61

Query: 88  ILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGP 147
           +L R+M+ E   Y+   +  +P+  + +++ N +     +    PY V LLV G D   P
Sbjct: 62  VLVRYMKAELELYRLQRRVNMPIEAVATLLSNML----NQVKYMPYMVQLLVGGIDT-AP 116

Query: 148 HIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPND 207
           H++    +    +    + GS S      LE + +   + +++E V   +RA+      D
Sbjct: 117 HVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYS--EKMTVDEGVDLVIRAISAAKQRD 174

Query: 208 SELTTKNVSIGLVGQNQKFKTLDERETGHYL 238
           S  +   + + ++ +   +  L   +    +
Sbjct: 175 S-ASGGMIDVAVITRKDGYVQLPTDQIESRI 204

>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H Length = 234

 Score =  112 bits (283), Expect = 1e-30
 Identities = 41/173 (23%), Positives = 70/173 (40%), Gaps = 12/173 (6%)

Query: 40  TVGLKNKTHAVIIAL-KRAAS-ELAAHQ--KKIIVIDDHMGLSFAGLTADARILARFMRM 95
             GL  +   VI+    RA +  + A +  +KI  I   +    AG+ AD  +  R    
Sbjct: 3   IAGLVFR-DGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAAS 61

Query: 96  ECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPS 155
           +   +  +      V  +  I+   +     RY +   G  L+V G D  GP +Y+  P 
Sbjct: 62  KMELHALSTGREPRVATVTRILRQTLF----RY-QGHVGASLVVGGVDLNGPQLYEVHPH 116

Query: 156 SNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDS 208
            +Y  +   A+GS   +A   LE R    P  +LE   +  + A+   + +D 
Sbjct: 117 GSYSRLPFTALGSGQGAAVALLEDRFQ--PNMTLEAAQELLVEAITAGILSDL 167

>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ... Length = 222

 Score =  108 bits (272), Expect = 5e-29
 Identities = 36/172 (20%), Positives = 67/172 (38%), Gaps = 10/172 (5%)

Query: 40  TVGLKNKTHAVIIALKRA-ASELAAHQ--KKIIVIDDHMGLSFAGLTADARILARFMRME 96
            VG+K     VI A  R+    + A +   K+  I   +  + AG  AD   + + +   
Sbjct: 3   IVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSN 62

Query: 97  CLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSS 156
              +         V   + ++   +     +Y +   G  L+VAG D  G H++      
Sbjct: 63  IELHSLYTSREPRVVSALQMLKQHLF----KY-QGHIGAYLIVAGVDPTGSHLFSIHAHG 117

Query: 157 NYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDS 208
           +      +++GS S +A   LE       + + EE +K    A++  + ND 
Sbjct: 118 STDVGYYLSLGSGSLAAMAVLESHWK--QDLTKEEAIKLASDAIQAGIWNDL 167

>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H Length = 234

 Score =  103 bits (260), Expect = 3e-27
 Identities = 35/173 (20%), Positives = 64/173 (36%), Gaps = 12/173 (6%)

Query: 40  TVGLKNKTHAVIIAL-KRAAS-ELAAHQ--KKIIVIDDHMGLSFAGLTADARILARFMRM 95
             G+  K   +++    RA    + A +   KI  I  ++    AG  AD  +  + +  
Sbjct: 3   IAGVVYK-DGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISS 61

Query: 96  ECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPS 155
               +  +      V     ++   +     RY +   G  L++ G D  GPH+Y   P 
Sbjct: 62  NLELHSLSTGRLPRVVTANRMLKQMLF----RY-RGYIGAALVLGGVDVTGPHLYSIYPH 116

Query: 156 SNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDS 208
            +   +  + +GS S +A    E +    P+   EE       A+   + ND 
Sbjct: 117 GSTDKLPYVTMGSGSLAAMAVFEDKFR--PDMEEEEAKNLVSEAIAAGIFNDL 167

>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H Length = 294

 Score =  100 bits (249), Expect = 3e-25
 Identities = 44/250 (17%), Positives = 86/250 (34%), Gaps = 20/250 (8%)

Query: 19  SPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA-AHQ--KKIIVIDDHM 75
           S   R      + +    G+  V L  K   ++   +RA      A +  + + V D++ 
Sbjct: 47  SHSTRGGDGMESGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYS 106

Query: 76  GLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGV 135
               AG    A  L R   +E  +Y+      L      + + + ++        +   V
Sbjct: 107 AAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVR-GNLGAAMQGLAV 165

Query: 136 GLLVAGYDDA------GPHIYQTCPSSNYYDVKA--MAIGSRSQSARTYLEKRLADFPEA 187
             L+ GYD           I         Y+ +A   A+GS S  A++ L+K  +  P++
Sbjct: 166 VPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYS--PDS 223

Query: 188 SLEEIVKHGLRALRDTLPNDS------ELTTKNVSIGLVGQNQKFKTLDERETGHYLSLI 241
             E  ++  + +L D   +DS             +   + Q       +E  +     ++
Sbjct: 224 DEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVHVSEETTSELARRIV 283

Query: 242 EGEERRGGGG 251
                +GG  
Sbjct: 284 AERTEQGGSA 293

>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* Length = 287

 Score = 97.1 bits (242), Expect = 3e-24
 Identities = 39/182 (21%), Positives = 74/182 (40%), Gaps = 12/182 (6%)

Query: 32  EAVKQGSATVGLKNKTHAVIIAL-KRA-ASELAAHQ--KKIIVIDDHMGLSFAGLTADAR 87
             +  G+ T+  + +   +I+A+  RA A    A Q  KK+I I+  +  + AG  AD +
Sbjct: 70  IKIAHGTTTLAFRFQ-GGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQ 128

Query: 88  ILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AG 146
               ++  +C  ++   K+ + V     I+ N +     +Y      +G ++ GY    G
Sbjct: 129 FWETWLGSQCRLHELREKERISVAAASKILSNLV----YQYKGAGLSMGTMICGYTRKEG 184

Query: 147 PHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPN 206
           P IY               +GS    A   L+       + S+E+ +  G R++      
Sbjct: 185 PTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYK--WDLSVEDALYLGKRSILAAAHR 242

Query: 207 DS 208
           D+
Sbjct: 243 DA 244

>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K Length = 204

 Score = 94.6 bits (236), Expect = 5e-24
 Identities = 38/172 (22%), Positives = 73/172 (42%), Gaps = 9/172 (5%)

Query: 40  TVGLKNKTHAVIIALKRA-ASELAAHQ--KKIIVIDDHMGLSFAGLTADARILARFMRME 96
           T+  K +   ++ A  RA A    A Q  KK+I I+ ++  + AG  AD     R +  +
Sbjct: 3   TLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQ 62

Query: 97  CLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSS 156
           C  Y+  +K+ + V     ++ N +     +Y      +G ++ G+D  GP +Y      
Sbjct: 63  CRIYELRNKERISVAAASKLLANMVY----QYKGMGLSMGTMICGWDKRGPGLYYVDSEG 118

Query: 157 NYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDS 208
           N       ++GS S  A   +++  +   +  +E+      RA+      D+
Sbjct: 119 NRISGATFSVGSGSVYAYGVMDRGYS--YDLEVEQAYDLARRAIYQATYRDA 168

>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4 Length = 202

 Score = 90.3 bits (225), Expect = 2e-22
 Identities = 56/174 (32%), Positives = 81/174 (46%), Gaps = 12/174 (6%)

Query: 40  TVGLKNKTHAVIIAL-KRA-ASELAAHQ--KKIIVIDDHMGLSFAGLTADARILARFMRM 95
           TVGL  K   V++A  KRA      A +  KKI  I D M ++ AG   DA+ LAR +++
Sbjct: 3   TVGLVCK-DGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKI 61

Query: 96  ECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPS 155
           E   Y+   +    V  + ++  N +      Y   PY V LL+ G D  G  IY   P 
Sbjct: 62  EANLYEIRRERKPTVRAIATLTSNLL----NSYRYFPYLVQLLIGGIDSEGKSIYSIDPI 117

Query: 156 -SNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDS 208
                +   +A GS S +A   LE R    PE  ++E V+  +RA+   +  DS
Sbjct: 118 GGAIEEKDIVATGSGSLTAYGVLEDRFT--PEIGVDEAVELAVRAIYSAMKRDS 169

>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ... Length = 212

 Score = 90.0 bits (224), Expect = 3e-22
 Identities = 37/174 (21%), Positives = 71/174 (40%), Gaps = 12/174 (6%)

Query: 40  TVGLKNKTHAVIIAL-KRA-ASELAAHQ--KKIIVIDDHMGLSFAGLTADARILARFMRM 95
           T+  + +   +I+A+  RA A    A Q  K++I I+  +  + AG  AD +    ++  
Sbjct: 3   TLAFRFQ-GGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGS 61

Query: 96  ECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA-GPHIYQTCP 154
           +C  ++   K+ + V     I+ N +     +Y      +G ++ GY    GP IY    
Sbjct: 62  QCRLHELREKERISVAAASKILSNLV----YQYKGAGLSMGTMICGYTRKEGPTIYYVDS 117

Query: 155 SSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDS 208
                      +GS    A   L+       + S+E+ +  G R++      D+
Sbjct: 118 DGTRLKGDIFCVGSGQTFAYGVLDSNYK--WDLSVEDALYLGKRSILAAAHRDA 169

>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H Length = 291

 Score = 91.5 bits (227), Expect = 4e-22
 Identities = 36/188 (19%), Positives = 72/188 (38%), Gaps = 14/188 (7%)

Query: 32  EAVKQGSATVGLKNKTHAVIIALKRAAS-ELAAHQ--KKIIVIDDHMGLSFAGLTADARI 88
             +  G+  V LK     V+   +R+    + + +  +K+ + DD+     AG  A A  
Sbjct: 52  AQLPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVE 111

Query: 89  LARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYD----- 143
            AR   +E  +Y+      L     I+ +   ++        +      L+AGYD     
Sbjct: 112 FARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAA-MQGLLALPLLAGYDIHASD 170

Query: 144 -DAGPHIYQTCPSSNYYDVKAM--AIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRAL 200
             +   I     +  +   +    A+GS S  A++ ++K  +       +  ++  + AL
Sbjct: 171 PQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYS--QVTDGDSGLRVAVEAL 228

Query: 201 RDTLPNDS 208
            D   +DS
Sbjct: 229 YDAADDDS 236

>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 Length = 235

 Score = 88.7 bits (220), Expect = 2e-21
 Identities = 42/229 (18%), Positives = 81/229 (35%), Gaps = 20/229 (8%)

Query: 40  TVGLKNKTHAVIIALKRAASELA-AHQ--KKIIVIDDHMGLSFAGLTADARILARFMRME 96
            V L  K   ++   +RA      A +  +K+ V D++     AG    A  L R   +E
Sbjct: 3   IVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVE 62

Query: 97  CLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA------GPHIY 150
             +Y+      L      + + + ++        +   V  L+ GYD           I 
Sbjct: 63  LEHYEKIEGVPLTFDGKANRLASMVR-GNLGAAMQGLAVVPLLVGYDLDADDESRAGRIV 121

Query: 151 QTCPSSNYYDVKA--MAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDS 208
                   Y+ +A   A+GS S  A++ L+K  +  P++  E  ++  + +L D   +DS
Sbjct: 122 SYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYS--PDSDEETALRAAIESLYDAADDDS 179

Query: 209 ------ELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEERRGGGG 251
                        +   + Q       +E  +     ++     +GG  
Sbjct: 180 ATGGPDLTRGIYPTAVTITQAGAVHVSEETTSELARRIVAERTEQGGSA 228

>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M Length = 219

 Score = 81.9 bits (203), Expect = 4e-19
 Identities = 33/175 (18%), Positives = 69/175 (39%), Gaps = 8/175 (4%)

Query: 32  EAVKQGSATVGLKNKTHAVIIALKRAASE--LAAHQ--KKIIVIDDHMGLSFAGLTADAR 87
             +  G++ +G+K +   V+IA     S   LA  +   +I+ +++   L  +G  AD +
Sbjct: 3   NPMVTGTSVLGVKFE-GGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQ 61

Query: 88  ILARFMRMECLNYKYA-HKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAG 146
            L + +    ++ +      +     + S +   M   ++R    P    +++ GY D  
Sbjct: 62  YLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMY--SRRSKMNPLWNTMVIGGYADGE 119

Query: 147 PHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALR 201
             +         Y+  ++A G  +  A+  L + L   P  S  E      R +R
Sbjct: 120 SFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMR 174

>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N Length = 199

 Score = 79.9 bits (198), Expect = 1e-18
 Identities = 28/174 (16%), Positives = 56/174 (32%), Gaps = 14/174 (8%)

Query: 40  TVGLKNKTHAVIIAL-KRA-ASELAAHQ--KKIIVIDDHMGLSFAGLTADARILARFMRM 95
            + ++     V++    R  A     ++   K+  +   +  + +G  ADA+ +A     
Sbjct: 3   IMAVEFD-GGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAY 61

Query: 96  ECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKR-PYGVGLLVAGYDDAGPHIYQTCP 154
           +   +    ++   V    ++V N        Y  R      L+VAG+D           
Sbjct: 62  QLELHGLELEEPPLVLAAANVVKNIS------YKYREDLLAHLIVAGWDQREGGQVYGTM 115

Query: 155 SSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDS 208
                       GS S     Y++      P  + EE  +    A+   +  D 
Sbjct: 116 GGMLIRQPFTIGGSGSSYIYGYVDAAYK--PGMTPEECRRFTTNAITLAMNRDG 167

>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N Length = 205

 Score = 79.6 bits (197), Expect = 2e-18
 Identities = 28/175 (16%), Positives = 57/175 (32%), Gaps = 15/175 (8%)

Query: 40  TVGLKNKTHAVIIALKRAASE--LAAHQ--KKIIVIDDHMGLSFAGLTADARILARFMRM 95
            + ++     V++      +     A++   K+  I D +    +G  AD + +A  +  
Sbjct: 3   IMAVQFD-GGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTY 61

Query: 96  ECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKR-PYGVGLLVAGYDD-AGPHIYQTC 153
           +   +     +   V    S+           Y  R     G+++AG+D   G  +Y   
Sbjct: 62  QLGFHSIELNEPPLVHTAASLFKEMC------YRYREDLMAGIIIAGWDPQEGGQVYSVP 115

Query: 154 PSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDS 208
                        GS S     Y++         + EE ++    AL   +  D 
Sbjct: 116 MGGMMVRQSFAIGGSGSSYIYGYVDATYR--EGMTKEECLQFTANALALAMERDG 168

>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ... Length = 198

 Score = 78.4 bits (194), Expect = 4e-18
 Identities = 33/168 (19%), Positives = 60/168 (35%), Gaps = 11/168 (6%)

Query: 40  TVGLKNKTHAVIIAL-KRA-ASELAAHQ--KKIIVIDDHMGLSFAGLTADARILARFMRM 95
            +G++ +  +VI+A  K              K   +  H  +SFAG   D    A +++ 
Sbjct: 4   ILGIRVQ-DSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQA 62

Query: 96  ECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA--GPHIYQTC 153
               Y       L    + S V  ++    +     PY V +L+ GYD     P +YQ  
Sbjct: 63  NIQLYSIREDYELSPQAVSSFVRQELAKSIRSRR--PYQVNVLIGGYDKKKNKPELYQID 120

Query: 154 PSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALR 201
                 ++   A G       + L+      P+ + EE +      ++
Sbjct: 121 YLGTKVELPYGAHGYSGFYTFSLLDHHYR--PDMTTEEGLDLLKLCVQ 166

>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ... Length = 205

 Score = 76.5 bits (189), Expect = 3e-17
 Identities = 34/181 (18%), Positives = 65/181 (35%), Gaps = 16/181 (8%)

Query: 34  VKQGSATVGLKNKTHAVIIALKRA-ASELAAHQ--KKIIVIDDHMGLSFAGLTADARILA 90
           V  G++ + +  K   ++ A  R       A++   K+  + D +    +G  AD + +A
Sbjct: 6   VSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIA 65

Query: 91  RFMRMECLNYKYAHKDTLPVFRLISIVGNKM--QVCTQRYDKRPYGVGLLVAGYDDA-GP 147
             ++     Y   +          +     +  ++C +   K     G++VAGYDD    
Sbjct: 66  DIVQYHLELYTSQYG------TPSTETAASVFKELCYEN--KDNLTAGIIVAGYDDKNKG 117

Query: 148 HIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPND 207
            +Y      + + +     GS S     Y +K        S EE V     +L   +  D
Sbjct: 118 EVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFR--ENMSKEETVDFIKHSLSQAIKWD 175

Query: 208 S 208
            
Sbjct: 176 G 176

>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J Length = 201

 Score = 75.7 bits (187), Expect = 5e-17
 Identities = 34/167 (20%), Positives = 62/167 (37%), Gaps = 10/167 (5%)

Query: 40  TVGLKNKTHAVIIALKRAASE--LAAHQ--KKIIVIDDHMGLSFAGLTADARILARFMRM 95
            +G++     V++A  R A+   +       K+  + + + L   G   D    A +++ 
Sbjct: 4   LIGIQGP-DYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQK 62

Query: 96  ECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA-GPHIYQTCP 154
               YK  +   L      +     +  C +     PY V LL+AGYD+  GP +Y    
Sbjct: 63  NVQLYKMRNGYELSPTAAANFTRRNLADCLRSRT--PYHVNLLLAGYDEHEGPALYYMDY 120

Query: 155 SSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALR 201
            +        A G  +    + L++     P  S E  V+   + L 
Sbjct: 121 LAALAKAPFAAHGYGAFLTLSILDRYYT--PTISRERAVELLRKCLE 165

>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L Length = 213

 Score = 74.6 bits (184), Expect = 2e-16
 Identities = 29/181 (16%), Positives = 63/181 (34%), Gaps = 19/181 (10%)

Query: 34  VKQGSATVGLKNKTHAVIIALKRA-ASELAAHQ--KKIIVIDDHMGLSFAGLTADARILA 90
           V  G   + +  +  A++ +  R         +   K   + D   +  +G   D   L 
Sbjct: 6   VFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLT 65

Query: 91  RFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKR--PYGVGLLVAGYDDAG-P 147
           + +      YK+++   +    + +++   +      Y +R  PY V  ++ G D+ G  
Sbjct: 66  KIIEARLKMYKHSNNKAMTTGAIAAMLSTIL------YSRRFFPYYVYNIIGGLDEEGKG 119

Query: 148 HIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADF-------PEASLEEIVKHGLRAL 200
            +Y   P  +Y      A GS S   +  L+ ++             SL+  ++      
Sbjct: 120 AVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVF 179

Query: 201 R 201
            
Sbjct: 180 I 180

>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M* Length = 266

 Score = 75.5 bits (186), Expect = 2e-16
 Identities = 29/177 (16%), Positives = 64/177 (36%), Gaps = 14/177 (7%)

Query: 37  GSATVGLKNKTHAVIIALKRA-ASELAAHQ--KKIIVIDDHMGLSFAGLTADARILARFM 93
           G++ + +K     +I A        L      +++I + D+  +  +G  +D + + R +
Sbjct: 41  GTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLL 100

Query: 94  RMECLNYKY-----AHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPH 148
           +       Y       ++ L    +   +   M    +R    P    ++VAG    G  
Sbjct: 101 KDLVTENAYDNPLADAEEALEPSYIFEYLATVM--YQRRSKMNPLWNAIIVAGVQSNGDQ 158

Query: 149 -IYQTCPSSNYYDVKAMAIGSRSQSARTYLE---KRLADFPEASLEEIVKHGLRALR 201
            +         Y    +A G  +  A   L     R +D P+ +++   +  + A+R
Sbjct: 159 FLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMR 215

>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ... Length = 233

 Score = 74.3 bits (183), Expect = 4e-16
 Identities = 30/187 (16%), Positives = 67/187 (35%), Gaps = 22/187 (11%)

Query: 31  MEAVKQGSATVGLKNKTHAVIIALKRA-ASELAAHQ--KKIIVIDDHMGLSFAGLTADAR 87
            + +  G++ + +K     +I A        L      +++I + D+  +  +G  +D +
Sbjct: 2   QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQ 61

Query: 88  ILARFMRMECLNYKY-----AHKDTLPVFRLISIVGNKMQVCTQRYDKR----PYGVGLL 138
            + R ++       Y       ++ L    +   +   M      Y +R    P    ++
Sbjct: 62  HIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVM------YQRRSKMNPLWNAII 115

Query: 139 VAGYDDAGPH-IYQTCPSSNYYDVKAMAIGSRSQSARTYLE---KRLADFPEASLEEIVK 194
           VAG    G   +         Y    +A G  +  A   L     R +D P+ +++   +
Sbjct: 116 VAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEE 175

Query: 195 HGLRALR 201
             + A+R
Sbjct: 176 AIVNAMR 182

>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ... Length = 222

 Score = 73.1 bits (180), Expect = 8e-16
 Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 11/150 (7%)

Query: 37  GSATVGLKNKTHAVIIALKRAASE---LAAHQKKIIVIDDHMGLSFAGLTADARILARFM 93
           G   +G+  +  AV+    R  ++    + ++ K+    D++ +S  G  AD   L +  
Sbjct: 9   GGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRF 68

Query: 94  RMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKR--PYGVGLLVAGYDDAG-PHIY 150
           +     Y + H D     + +SI      +    Y KR  PY V  ++AG D+ G   +Y
Sbjct: 69  KNSVKWYHFDHND-----KKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVY 123

Query: 151 QTCPSSNYYDVKAMAIGSRSQSARTYLEKR 180
              P  +Y   +  A G+ +     +L+ +
Sbjct: 124 SFDPVGSYEREQCRAGGAAASLIMPFLDNQ 153

>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I Length = 205

 Score = 72.6 bits (179), Expect = 9e-16
 Identities = 36/181 (19%), Positives = 70/181 (38%), Gaps = 18/181 (9%)

Query: 37  GSATVGLKNKTHAVIIALKRAASE----LAAHQKKIIVIDDHMGLSFAGLTADARILARF 92
           G A + +K K + V IA  R        +    +KI  + D + +  AGL  D + +A+ 
Sbjct: 8   GGAVMAMKGK-NCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQR 66

Query: 93  MRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKR--PYGVGLLVAGYDD--AGPH 148
           ++     Y+      +  + L+S+V N +      Y+KR  PY    ++AG D     P 
Sbjct: 67  LKFRLNLYELKEGRQIKPYTLMSMVANLL------YEKRFGPYYTEPVIAGLDPKTFKPF 120

Query: 149 IYQTCPSSNYYDVKA-MAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPND 207
           I               +  G+ ++      E      P    + + +   +A+ + +  D
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLW--EPNMDPDHLFETISQAMLNAVDRD 178

Query: 208 S 208
           +
Sbjct: 179 A 179

>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ... Length = 204

 Score = 71.5 bits (176), Expect = 2e-15
 Identities = 38/181 (20%), Positives = 62/181 (34%), Gaps = 19/181 (10%)

Query: 37  GSATVGLKNKTHAVIIALKRAASE----LAAHQKKIIVIDDHMGLSFAGLTADARILARF 92
           G   V +  K   V IA           ++   +KI     H+ L   GL  D   L   
Sbjct: 8   GGIVVAMTGK-DCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEM 65

Query: 93  MRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKR--PYGVGLLVAGYDDAG--PH 148
            R +   YK   +  +       +V + +      Y++R  PY VG +VAG +     P 
Sbjct: 66  FRYKTNLYKLKEERAIEPETFTQLVSSSL------YERRFGPYFVGPVVAGINSKSGKPF 119

Query: 149 IYQTCPSSNYYDVKAMAI-GSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPND 207
           I          + K   + G+ S       E      P    E++ +   +AL +    D
Sbjct: 120 IAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYE--PNLEPEDLFETISQALLNAADRD 177

Query: 208 S 208
           +
Sbjct: 178 A 178

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 4e-06
 Identities = 32/276 (11%), Positives = 83/276 (30%), Gaps = 75/276 (27%)

Query: 2   NVYW-KFRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASE 60
            ++W   +N    +  +   Q  L+Q++    +  +   +  +K + H++   L+R    
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS--RSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 61  LAAHQKKIIVIDDHMGLSFAGLTADARILARF--------------------------MR 94
              ++  ++V+ +           +A+    F                          + 
Sbjct: 241 -KPYENCLLVLLN---------VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290

Query: 95  MECLNYKYAHKDTLPVFRLISIVGNKM-----QVCTQRYDKRPYGVGLLVAGYDDAGPHI 149
           ++  +      +   +   +  +  +      +V T      P  + ++     D G   
Sbjct: 291 LDHHSMTLTPDEVKSLL--LKYLDCRPQDLPREVLT----TNPRRLSIIAESIRD-GLAT 343

Query: 150 YQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTL---PN 206
           +        +              +     +L    E+SL  +     R + D L   P 
Sbjct: 344 WD------NW--------------KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383

Query: 207 DSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIE 242
            + + T  +S+ +     K   +      H  SL+E
Sbjct: 384 SAHIPTILLSL-IWFDVIKSDVMVVVNKLHKYSLVE 418

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	251
1iru_F	263	20S proteasome; cell cycle, immune response, prote	100.0
1ryp_F	233	20S proteasome; multicatalytic proteinase, protein	100.0
1ryp_A	243	20S proteasome; multicatalytic proteinase, protein	100.0
1yar_A	233	Proteasome alpha subunit; proteasome 20S, PA26 pro	100.0
1j2p_A	246	Alpha-ring, proteasome alpha subunit; hydrolase; 2	100.0
1iru_B	233	20S proteasome; cell cycle, immune response, prote	100.0
1iru_E	241	20S proteasome; cell cycle, immune response, prote	100.0
1iru_A	246	20S proteasome; cell cycle, immune response, prote	100.0
3h4p_A	264	Proteasome subunit alpha; core particle, cytoplasm	100.0
1iru_C	261	20S proteasome; cell cycle, immune response, prote	100.0
1ryp_C	244	20S proteasome; multicatalytic proteinase, protein	100.0
1ryp_D	241	20S proteasome; multicatalytic proteinase, protein	100.0
1iru_G	254	20S proteasome; cell cycle, immune response, prote	100.0
1iru_D	248	20S proteasome; cell cycle, immune response, prote	100.0
1ryp_E	242	20S proteasome; multicatalytic proteinase, protein	100.0
1ryp_G	244	20S proteasome; multicatalytic proteinase, protein	100.0
1ryp_B	250	20S proteasome; multicatalytic proteinase, protein	100.0
3nzj_F	288	Proteasome component C1; ubiquitin, protein degrad	100.0
1q5q_A	259	Proteasome alpha-type subunit 1; proteasome assemb	100.0
3mi0_A	248	Proteasome subunit alpha; enzyme inhibitors, lacto	100.0
3h4p_a	219	Proteasome subunit beta; core particle, cytoplasm,	100.0
1yar_H	217	Proteasome beta subunit; proteasome 20S, PA26 prot	100.0
1j2q_H	202	Proteasome beta subunit; ubiquitin, CP, hydrolase;	100.0
3nzj_K	287	Proteasome component PRE2; ubiquitin, protein degr	100.0
1q5r_H	294	Proteasome beta-type subunit 1; proteasome assembl	100.0
2jay_A	291	Proteasome; hydrolase; 1.99A {Mycobacterium tuberc	100.0
1iru_L	204	20S proteasome; cell cycle, immune response, prote	100.0
1iru_N	219	20S proteasome; cell cycle, immune response, prote	100.0
1q5q_H	235	Proteasome beta-type subunit 1; proteasome assembl	100.0
1ryp_L	212	20S proteasome; multicatalytic proteinase, protein	100.0
1ryp_N	233	20S proteasome; multicatalytic proteinase, protein	100.0
1iru_H	205	20S proteasome; cell cycle, immune response, prote	100.0
3nzj_H	261	Proteasome component PUP1; ubiquitin, protein degr	100.0
1g0u_M	266	Proteasome component PRE4; ubiquitin, degradation,	100.0
1iru_M	213	20S proteasome; cell cycle, immune response, prote	100.0
3unf_H	234	Proteasome subunit beta type-10; antigen presentat	100.0
1ryp_K	198	20S proteasome; multicatalytic proteinase, protein	100.0
1ryp_H	205	20S proteasome; multicatalytic proteinase, protein	100.0
1ryp_M	222	20S proteasome; multicatalytic proteinase, protein	100.0
1iru_J	205	20S proteasome; cell cycle, immune response, prote	100.0
1ryp_I	222	20S proteasome; multicatalytic proteinase, protein	100.0
1ryp_J	204	20S proteasome; multicatalytic proteinase, protein	100.0
3unf_N	199	Proteasome subunit beta type-9; antigen presentati	100.0
1iru_K	201	20S proteasome; cell cycle, immune response, prote	100.0
1iru_I	234	20S proteasome; cell cycle, immune response, prote	100.0
2z3b_A	180	ATP-dependent protease HSLV; N-terminal nucleophIl	100.0
1m4y_A	171	ATP-dependent protease HSLV; N-terminal catalytic	100.0
1g3k_A	174	ATP-dependent protease HSLV; hydrolase; 1.90A {Hae	100.0

>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E

Probab=100.00  E-value=5.3e-65  Score=441.51  Aligned_cols=238  Identities=66%  Similarity=1.105  Sum_probs=226.0

Q ss_pred             cccccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccccccCceEEEcCcEEEEEeCcHHH
Q psy1918           6 KFRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTAD   85 (251)
Q Consensus         6 ~~~~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~~~~~Ki~~i~~~i~~~~sG~~~D   85 (251)
                      |||++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++++.++.+||++|++|++|++||+.+|
T Consensus         1 m~~~~yd~~~t~fsP~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~gl~~~~~KI~~i~~~i~~~~aG~~aD   80 (263)
T 1iru_F            1 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTAD   80 (263)
T ss_dssp             ---CTTTSCTTCCCTTSCCHHHHHHHHHHHHSCCEEEEECSSEEEEEEECCCSSTTBCCCCCEEEEETTEEEEEEECHHH
T ss_pred             CCcCCCCCCCccCCCCCeehHHHHHHHHHHcCCcEEEEEeCCEEEEEEecccccccccchhcEEEEcCCEEEEEeCCHHH
Confidence            89999999999999999999999999999999999999999999999999999998888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEE
Q psy1918          86 ARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMA  165 (251)
Q Consensus        86 ~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a  165 (251)
                      ++.+.++++.+++.|++.++++++++.+++++++.++.|+++.+.|||++++||||||++||+||.+||+|++.+++++|
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~a  160 (263)
T 1iru_F           81 ARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMS  160 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECSSSCEEEESEEE
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcCCCCEEEEECCCCCEEEeeEEE
Confidence            99999999999999999999999999999999999999999999999999999999999899999999999999999999


Q ss_pred             EcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHHhhh
Q psy1918         166 IGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEG  243 (251)
Q Consensus       166 ~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~~~~  243 (251)
                      +|+|++.++++|++.|+++++|+++||++++++||+.++++|...++.+++|++|+++++|++++++||+.++..+..
T Consensus       161 iGsgs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~~~~~l~~~ei~~~~~~~~~  238 (263)
T 1iru_F          161 IGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEE  238 (263)
T ss_dssp             ESTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTEEEEEECSGGGHHHHTTCCC
T ss_pred             cCcccHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCCCeEECCHHHHHHHHHHHhc
Confidence            999999999999999983349999999999999999999998326788999999999866999999999999999863

>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...

Probab=100.00  E-value=2.2e-64  Score=430.47  Aligned_cols=231  Identities=48%  Similarity=0.785  Sum_probs=220.5

Q ss_pred             ccccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccccccCceEEEcCcEEEEEeCcHHHH
Q psy1918           7 FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTADA   86 (251)
Q Consensus         7 ~~~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~~~~~Ki~~i~~~i~~~~sG~~~D~   86 (251)
                      ||++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++++.++.+||++|++|++|++||+.+|+
T Consensus         1 ~~~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~Ki~~i~~~i~~~~aG~~aD~   80 (233)
T 1ryp_F            1 FRNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELSSYQKKIIKCDEHMGLSLAGLAPDA   80 (233)
T ss_dssp             CHHHHSSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSEEEEEEECCCSSTTBCCCCCEEEEETTEEEEEEECHHHH
T ss_pred             CCCcccCCCccCCCCCeehHHHHHHHHHHcCCCEEEEEcCCEEEEEEEeccccccccccCcEEEEcCCEEEEEEechHHH
Confidence            68899999999999999999999999999999999999999999999999999988888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEE
Q psy1918          87 RILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAI  166 (251)
Q Consensus        87 ~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~  166 (251)
                      +.+.+.++.+++.|++.+++++|++.+++++++.+|.|+++.+.|||++++||||||++||+||.+||+|++.+++++|+
T Consensus        81 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~ai  160 (233)
T 1ryp_F           81 RVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAI  160 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECTTSCEEEESEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeCCcCEEEEECCCCCeeeeeEEEE
Confidence            99999999999999999999999999999999999999999999999999999999998999999999999999999999


Q ss_pred             cCChHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHH
Q psy1918         167 GSRSQSARTYLEKRLADFPEA--SLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYL  238 (251)
Q Consensus       167 G~g~~~a~~~L~~~~~~~~~~--s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l  238 (251)
                      |+|++.++++||+.|++.++|  +++||++++++||+.++ +|...++.+++|++|+++++|++++++||+++|
T Consensus       161 G~gs~~a~~~Le~~~~~~~~m~~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~~~~~~l~~~ei~~~l  233 (233)
T 1ryp_F          161 GARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDTPFTIYDGEAVAKYI  233 (233)
T ss_dssp             STTHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETTEEEEEEEGGGGGGGC
T ss_pred             CCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECCCCEEECCHHHHHhhC
Confidence            999999999999999832389  99999999999999999 773368999999999999679999999998764

>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...

Probab=100.00  E-value=8.5e-64  Score=429.41  Aligned_cols=234  Identities=30%  Similarity=0.471  Sum_probs=222.5

Q ss_pred             ccCCCCceeecCCCcchhhchHHHHHhc-CCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHHH
Q psy1918           9 NQYDSDVTVWSPQGRLHQVEYAMEAVKQ-GSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTAD   85 (251)
Q Consensus         9 ~~yd~~~t~fsp~G~l~QvEya~~a~~~-G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D   85 (251)
                      ++||+++|+|||||||+|||||++|+++ |+|+|||+++||||||+|+|.+.++.  ++.+|||+|++|++|++||+.+|
T Consensus         1 ~~yd~~~t~fsp~Grl~QvEYA~~av~~~Gtt~vgi~~~dgVvlaad~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD   80 (243)
T 1ryp_A            1 AGYDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIPD   80 (243)
T ss_dssp             CGGGGTSSSCCTTSCCHHHHHHHHHTTTTCCCEEEEECSSEEEEEEECCCCCTTBCGGGCCSEEECSSSCEEEEESCHHH
T ss_pred             CCCCCCCceECCCCeeHHHHHHHHHHhcCCCcEEEEEeCCEEEEEEEecCCccccCCCcCCceEEECCCEEEEEEecHHH
Confidence            5899999999999999999999999999 99999999999999999999997664  57899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeEE
Q psy1918          86 ARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAM  164 (251)
Q Consensus        86 ~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~~  164 (251)
                      ++.+.+.++.+++.|++.++++++++.+++++++.+|.|+++++.|||+|++||||||+ +||+||.+||+|++.+++++
T Consensus        81 ~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~~~~~  160 (243)
T 1ryp_A           81 ARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKAT  160 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSEE
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCEEEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999996 78999999999999999999


Q ss_pred             EEcCChHHHHHHHHHhhcCCC-----CCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHH
Q psy1918         165 AIGSRSQSARTYLEKRLADFP-----EASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLS  239 (251)
Q Consensus       165 a~G~g~~~a~~~L~~~~~~~~-----~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~  239 (251)
                      |+|++++.++++||+.|++++     +||++||++++++||..+++||  .++.+++|++|+++| |++++++||++++.
T Consensus       161 a~G~gs~~a~~~Le~~~~~~~~~~~~~ms~eea~~l~~~al~~~~~rd--~s~~~iev~vi~~~g-~~~l~~~ei~~~~~  237 (243)
T 1ryp_A          161 ATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTE--FSKNDLEVGVATKDK-FFTLSAENIEERLV  237 (243)
T ss_dssp             EESTTHHHHHHHHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCC--CCTTSEEEEEEETTE-EEECCHHHHHHHHH
T ss_pred             EECCCcHHHHHHHHHHhhhcccccccCCCHHHHHHHHHHHHHHHhccc--CCCCcEEEEEEECCC-eEECCHHHHHHHHH
Confidence            999999999999999998311     8999999999999999999998  478999999999997 99999999999999


Q ss_pred             Hhhhhh
Q psy1918         240 LIEGEE  245 (251)
Q Consensus       240 ~~~~~~  245 (251)
                      .+++++
T Consensus       238 ~~~~~~  243 (243)
T 1ryp_A          238 AIAEQD  243 (243)
T ss_dssp             HHTTTC
T ss_pred             HhhccC
Confidence            996553

>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A

Probab=100.00  E-value=1.3e-63  Score=425.75  Aligned_cols=230  Identities=34%  Similarity=0.523  Sum_probs=211.2

Q ss_pred             ccccccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCc
Q psy1918           5 WKFRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGL   82 (251)
Q Consensus         5 ~~~~~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~   82 (251)
                      .|+|++||+++|+|||||||+|||||.+|+++|+|+|||+++||||||+|++.++++.  ++.+||++|++|++|++||.
T Consensus         2 ~m~~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~~~~~~~~~Ki~~i~~~i~~~~aG~   81 (233)
T 1yar_A            2 QQGQMAYSRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGL   81 (233)
T ss_dssp             -----------CCCCTTSCCHHHHHHHHHHTTSCCEEEEEETTEEEEEECCCCCCTTBCSTTCCSEEEEETTEEEEEEEB
T ss_pred             CcccccCCCCCceECcCCeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEeccCCcccccccccCeEEEecCCEEEEEeeC
Confidence            4889999999999999999999999999999999999999999999999999999875  46799999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeee
Q psy1918          83 TADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVK  162 (251)
Q Consensus        83 ~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~  162 (251)
                      .+|++.+.++++.+++.|++.++++++++.+++++++.++.|+++.+.|||++++||||||++||+||.+||.|++.+++
T Consensus        82 ~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~  161 (233)
T 1yar_A           82 VADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYK  161 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECSSCEEEEEECTTCCEEEBS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeCCCCEEEEECCCCCEEeee
Confidence            99999999999999999999999999999999999999999999999999999999999999899999999999999999


Q ss_pred             EEEEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHH
Q psy1918         163 AMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYL  238 (251)
Q Consensus       163 ~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l  238 (251)
                      ++|+|+|++.++++|++.|+  ++|+++||++++++||+.++++|.  ++.+++|++|+++++|++++++||+++|
T Consensus       162 ~~aiG~gs~~a~~~Le~~~~--~~~s~eea~~la~~al~~~~~~d~--s~~~i~v~vi~~~~~~~~~~~~ei~~~l  233 (233)
T 1yar_A          162 ATAIGSGKDAVVSFLEREYK--ENLPEKEAVTLGIKALKSSLEEGE--ELKAPEIASITVGNKYRIYDQEEVKKFL  233 (233)
T ss_dssp             EEEESTTHHHHHHHHHHHCC--TTCCHHHHHHHHHHHHHHTSCSSC--CCCCCEEEEEETTSCCEECCHHHHHTTC
T ss_pred             EEEEcCCcHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHhhccC--CCCcEEEEEEECCCCEEECCHHHHHhhC
Confidence            99999999999999999998  699999999999999999999984  6889999999999779999999998764

>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*

Probab=100.00  E-value=3.4e-63  Score=426.41  Aligned_cols=236  Identities=34%  Similarity=0.500  Sum_probs=225.0

Q ss_pred             cccccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcH
Q psy1918           6 KFRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLT   83 (251)
Q Consensus         6 ~~~~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~   83 (251)
                      |++++||+++|+|||||||+|||||.+|+++|+|+|||+++||||||+|++.+.++.  ++.+||++|+++++|+++|..
T Consensus         3 ~~~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~   82 (246)
T 1j2p_A            3 LPQMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICAATSGLV   82 (246)
T ss_dssp             -CCTTSSSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCTTBCGGGCCSEEECSSSEEEEEEECH
T ss_pred             ccccCcCCCCceECCCCeehHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCccccccCccCcEEEECCCEEEEEeEcc
Confidence            668999999999999999999999999999999999999999999999999999874  578999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeE
Q psy1918          84 ADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKA  163 (251)
Q Consensus        84 ~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~  163 (251)
                      +|++.+.+.++.+++.|++.++++++++.+++++++.+|.|+++.+.|||++++|||||| +||+||.+||.|++.++++
T Consensus        83 aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D-~gp~Ly~idp~G~~~~~~~  161 (246)
T 1j2p_A           83 ADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN-EVPKLYETDPSGALLEYKA  161 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES-SSEEEEEECTTCCEEEBSE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC-CCCEEEEECCCceEEeeeE
Confidence            999999999999999999999999999999999999999999999999999999999999 8999999999999999999


Q ss_pred             EEEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEe-cCCceEEecHHHHHHHHHHhh
Q psy1918         164 MAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVG-QNQKFKTLDERETGHYLSLIE  242 (251)
Q Consensus       164 ~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~-~~~~~~~l~~~ei~~~l~~~~  242 (251)
                      +|+|+|++.++++|++.|+  ++|+++||++++++||..++++ . .++.+++|++|+ ++++|++++++||++++.++.
T Consensus       162 ~aiGsgs~~a~~~Le~~~~--~~ms~eea~~la~~al~~~~~~-~-~sg~~i~v~vi~~~~~~~~~l~~~ei~~~~~~~~  237 (246)
T 1j2p_A          162 TAIGMGRMAVTEFFEKEYR--DDLSFDDAMVLGLVAMGLSIES-E-LVPENIEVGYVKVDDRTFKEVSPEELKPYVERAN  237 (246)
T ss_dssp             EEESTTHHHHHHHHHHHCC--TTCCHHHHHHHHHHHHHHHHTS-C-CCGGGEEEEEEETTTCCCEECCHHHHHHHHHHHH
T ss_pred             EEECCCcHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHhhc-c-CCCCcEEEEEEEcCCCceEECCHHHHHHHHHHHH
Confidence            9999999999999999998  6999999999999999999987 3 689999999999 766799999999999999997


Q ss_pred             hhhh
Q psy1918         243 GEER  246 (251)
Q Consensus       243 ~~~~  246 (251)
                      ++++
T Consensus       238 ~~~~  241 (246)
T 1j2p_A          238 ERIR  241 (246)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A

Probab=100.00  E-value=4.4e-63  Score=422.47  Aligned_cols=229  Identities=31%  Similarity=0.568  Sum_probs=220.6

Q ss_pred             cccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHHH
Q psy1918           8 RNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTAD   85 (251)
Q Consensus         8 ~~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D   85 (251)
                      |++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.+.++.  ++.+||++|++|++|++||..+|
T Consensus         2 ~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD   81 (233)
T 1iru_B            2 ERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPD   81 (233)
T ss_dssp             CCCCCSBSCCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSCEEEEEECCCCCSSBCSTTCCSSEESSSSEEEEEEECHHH
T ss_pred             CCCccCCceeECCCCeEehhHhHHHHHHcCCcEEEEEeCCEEEEEEEecCCccccccccCCeEEEECCCEEEEEEEccHH
Confidence            7899999999999999999999999999999999999999999999999997764  47899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEE
Q psy1918          86 ARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMA  165 (251)
Q Consensus        86 ~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a  165 (251)
                      ++.+.++++.+++.|++.++++++++.+++++++.+|.|+++.+.|||++++||||||++||+||.+||.|++.+++++|
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~~a  161 (233)
T 1iru_B           82 YRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATA  161 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECSSSEEEEEECTTSCEEEBSEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeCCCCeEEEECCCCCEEEeeEEE
Confidence            99999999999999999999999999999999999999999988999999999999998899999999999999999999


Q ss_pred             EcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHHh
Q psy1918         166 IGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLI  241 (251)
Q Consensus       166 ~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~~  241 (251)
                      +|+|++.++++|++.|+  ++|+++||++++++||+.++++|  .++++++|++|+++| +++++++||++++..+
T Consensus       162 iG~gs~~a~~~Le~~~~--~~ms~eea~~la~~al~~~~~~d--~sg~~i~v~vi~~~g-~~~l~~~ei~~~~~~~  232 (233)
T 1iru_B          162 MGKNYVNGKTFLEKRYN--EDLELEDAIHTAILTLKESFEGQ--MTEDNIEVGICNEAG-FRRLTPTEVKDYLAAI  232 (233)
T ss_dssp             ESTTHHHHHHHHHHHCC--TTCCHHHHHHHHHHHHHTTCCSC--CCSSSEEEEEEETTE-EEECCHHHHHHHHTTC
T ss_pred             ECCCCHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHhhcc--CCCCCEEEEEEECCC-EEECCHHHHHHHHHhc
Confidence            99999999999999999  69999999999999999999998  468899999999997 9999999999999765

>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D

Probab=100.00  E-value=3.4e-63  Score=425.13  Aligned_cols=233  Identities=32%  Similarity=0.523  Sum_probs=218.6

Q ss_pred             ccccccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCc
Q psy1918           5 WKFRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGL   82 (251)
Q Consensus         5 ~~~~~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~   82 (251)
                      .|+|++||+++|+|||||||+|||||.+|+++|+|+|||+++||||||+|++.++++.  ++.+||++|+++++|++||+
T Consensus         2 ~m~~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~   81 (241)
T 1iru_E            2 FLTRSEYDRGVNTFSPEGRLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGL   81 (241)
T ss_dssp             ------CCCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECCCCCTTBCTTSCCSEEEEETTEEEEEEEC
T ss_pred             CCccCCCCCCCceECCCCccHHHHHHHHHHHcCCcEEEEEcCCEEEEEEecccCCcCcCccccceEEEEcCCEEEEEeeC
Confidence            3789999999999999999999999999999999999999999999999999999974  57899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCC-----CCcceeeeeEEEEeCCCCeEEEECCCCC
Q psy1918          83 TADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYD-----KRPYGVGLLVAGYDDAGPHIYQTCPSSN  157 (251)
Q Consensus        83 ~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~-----~rP~~v~~iv~G~d~~gp~ly~id~~G~  157 (251)
                      .+|++.+.++++.+++.|++.++++++++.+++++++.+|.|+++.+     .|||++++||||||++||+||.+||.|+
T Consensus        82 ~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~~gp~Ly~idp~G~  161 (241)
T 1iru_E           82 IADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGT  161 (241)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEETTEEEEEEECTTSC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeCCCCEEEEECCCCc
Confidence            99999999999999999999999999999999999999999999888     8999999999999988899999999999


Q ss_pred             eeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHH
Q psy1918         158 YYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHY  237 (251)
Q Consensus       158 ~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~  237 (251)
                      +.+++++|+|+|++.++++|++.|+  ++|+++||++++++||..+++++  .++.+++|++|++++.|++++++||+++
T Consensus       162 ~~~~~~~aiGsgs~~a~~~Le~~~~--~~ms~eea~~la~~al~~~~~~~--~sg~~i~v~vi~~~~~~~~l~~~ei~~~  237 (241)
T 1iru_E          162 FVQCDARAIGSASEGAQSSLQELYH--KSMTLKEAIKSSLIILKQVMEEK--LNATNIELATVQPGQNFHMFTKEELEEV  237 (241)
T ss_dssp             EEEBSEEEESTTHHHHHHHHHHHCC--TTCCHHHHHHHHHHHHHHHCSSC--CCTTSEEEEEECSSSCCEECCHHHHHHH
T ss_pred             EEecceEEECCCcHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHhhcc--CCCCCEEEEEEECCCCeEECCHHHHHHH
Confidence            9999999999999999999999998  69999999999999999999883  6899999999999988999999999999


Q ss_pred             HHHh
Q psy1918         238 LSLI  241 (251)
Q Consensus       238 l~~~  241 (251)
                      ++++
T Consensus       238 ~~~~  241 (241)
T 1iru_E          238 IKDI  241 (241)
T ss_dssp             HTTC
T ss_pred             HHhC
Confidence            8653

>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G

Probab=100.00  E-value=1.1e-62  Score=423.12  Aligned_cols=237  Identities=30%  Similarity=0.515  Sum_probs=224.7

Q ss_pred             ccc-ccCCCCceeecCCCcchhhchHHHHHhc-CCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeC
Q psy1918           6 KFR-NQYDSDVTVWSPQGRLHQVEYAMEAVKQ-GSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAG   81 (251)
Q Consensus         6 ~~~-~~yd~~~t~fsp~G~l~QvEya~~a~~~-G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG   81 (251)
                      |++ ++||+++|+|||||||+|||||++|+++ |+|+|||+++||||||+|++.+.++.  ++.+||++|++|++|+++|
T Consensus         3 m~~~~~yd~~~t~fsp~Grl~QvEya~~av~~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG   82 (246)
T 1iru_A            3 RGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTG   82 (246)
T ss_dssp             CSCCCTTTTTSSCCCTTSCCHHHHHHHHHHHTTCCEEEEEECSSEEEEEEECCCCCSSBCGGGCCSEEESSSSCEEEEEE
T ss_pred             CCccCCcCCCCccCCCCCeehHHHHHHHHHhcCCCCEEEEEeCCEEEEEEeecCCCcccCCCccCceEEECCCEEEEEec
Confidence            554 7999999999999999999999999999 99999999999999999999997664  5789999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeee
Q psy1918          82 LTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYD  160 (251)
Q Consensus        82 ~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~  160 (251)
                      +.+|++.+.++++.+++.|++.++++++++.+++++++.+|.|+++.+.|||++++||||||+ +||+||.+||+|++.+
T Consensus        83 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~  162 (246)
T 1iru_A           83 MTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCG  162 (246)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCEEE
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCeeEEE
Confidence            999999999999999999999999999999999999999999999988999999999999996 7899999999999999


Q ss_pred             eeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCc-eEEecHHHHHHHHH
Q psy1918         161 VKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQK-FKTLDERETGHYLS  239 (251)
Q Consensus       161 ~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~-~~~l~~~ei~~~l~  239 (251)
                      ++++|+|+|++.++++|++.|++.++|+++||++++++||+.+++||  .++.+++|++|+++|. |++++++||++++.
T Consensus       163 ~~~~aiG~gs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd--~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~~  240 (246)
T 1iru_A          163 FKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSID--FKPSEIEVGVVTVENPKFRILTEAEIDAHLV  240 (246)
T ss_dssp             BSEEEEETTHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHTTCC--CCTTSEEEEEEETTEEEEEECCHHHHHHHHH
T ss_pred             eeEEEECCCcHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhccc--CCCCcEEEEEEECCCCeEEECCHHHHHHHHH
Confidence            99999999999999999999983339999999999999999999998  5799999999999875 89999999999999


Q ss_pred             Hhhhh
Q psy1918         240 LIEGE  244 (251)
Q Consensus       240 ~~~~~  244 (251)
                      .++++
T Consensus       241 ~~~~~  245 (246)
T 1iru_A          241 ALAER  245 (246)
T ss_dssp             HHHTC
T ss_pred             Hhhcc
Confidence            99654

>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=8.2e-64  Score=433.93  Aligned_cols=237  Identities=31%  Similarity=0.478  Sum_probs=217.1

Q ss_pred             ccccccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCc
Q psy1918           5 WKFRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGL   82 (251)
Q Consensus         5 ~~~~~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~   82 (251)
                      +|+.++||+++|+|||+|||||||||++|+++|+|+|||+++||||||+|++.++++.  ++.+||++|++|++|+++|+
T Consensus         6 ~~~~~~yd~~~t~fSp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~~li~~~~~~KI~~i~d~i~~~~aG~   85 (264)
T 3h4p_A            6 MVPPSAYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAATSGL   85 (264)
T ss_dssp             ----------CCCCCSSSSCHHHHHHHHHHHHSCCEEEECCSSEEEEEEECCCCSTTBCTTTCCCEEEEETTEEEEEEEC
T ss_pred             CCCccccCCCcceECCCCeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEecCccCCccccCccccEEEecCcEEEEeccc
Confidence            3568999999999999999999999999999999999999999999999999999874  57899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeee
Q psy1918          83 TADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVK  162 (251)
Q Consensus        83 ~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~  162 (251)
                      .+|++.++++++.+++.|++.++++++++.+|++|++.+|.|+++.++|||++++||||||++||+||.+||+|++.+++
T Consensus        86 ~aD~~~l~~~~r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~~gp~Ly~iDp~G~~~~~~  165 (264)
T 3h4p_A           86 VADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYK  165 (264)
T ss_dssp             SHHHHHHHTTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEETTEEEEEEECTTCCCEEES
T ss_pred             hHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeCCcCEEEEECCCceEEecC
Confidence            99999999999999999999999999999999999999999999999999999999999999899999999999999999


Q ss_pred             EEEEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCC-ceEEecHHHHHHHHHHh
Q psy1918         163 AMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQ-KFKTLDERETGHYLSLI  241 (251)
Q Consensus       163 ~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~-~~~~l~~~ei~~~l~~~  241 (251)
                      ++|+|+|+..++++|++.|+  ++|+++||++++++||..++++   .++++++|++|++++ +|++|+++||++++..+
T Consensus       166 ~~aiGsgs~~a~~~Le~~~~--~~ms~eea~~la~~al~~a~~~---~sg~~iev~vi~~~~~~~~~l~~~ei~~~~~~~  240 (264)
T 3h4p_A          166 ATAIGSGRPVVMELLEKEYR--DDITLDEGLELAITALTKANED---IKPENVDVCIITVKDAQFKKIPVEEIKKLIEKV  240 (264)
T ss_dssp             EEEESTTHHHHTTTHHHHCC--TTCCSHHHHHHHHHHHHHHSSS---CCTTSEEEEEEETTTTEEEECCTTTTGGGTTTT
T ss_pred             eEEECCCHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHhc---cCCCeEEEEEEEeCCCcEEECCHHHHHHHHHHH
Confidence            99999999999999999998  6999999999999999999975   588999999999764 69999999999999999


Q ss_pred             hhhhh
Q psy1918         242 EGEER  246 (251)
Q Consensus       242 ~~~~~  246 (251)
                      .++.+
T Consensus       241 ~~~~~  245 (264)
T 3h4p_A          241 KKKLN  245 (264)
T ss_dssp             TTSSS
T ss_pred             HHhhh
Confidence            85433

>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B

Probab=100.00  E-value=2.3e-62  Score=424.59  Aligned_cols=234  Identities=31%  Similarity=0.505  Sum_probs=223.5

Q ss_pred             ccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHH
Q psy1918           9 NQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTAD   85 (251)
Q Consensus         9 ~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D   85 (251)
                      ++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++++.   .+.+||++|++|++|++||+.+|
T Consensus         3 ~~yd~~~t~fsp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD   82 (261)
T 1iru_C            3 RRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSD   82 (261)
T ss_dssp             TTTCCCTTCCCTTSCCHHHHHHHHHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHH
T ss_pred             CccCCCCccCCCCCeehHHHhHHHHHhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHH
Confidence            399999999999999999999999999999999999999999999999999975   25899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeEE
Q psy1918          86 ARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAM  164 (251)
Q Consensus        86 ~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~~  164 (251)
                      ++.+.++++.+++.|++.++++++++.+++++++.++.|+++.+.|||++++||||||+ +||+||.+||+|++.+++++
T Consensus        83 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~  162 (261)
T 1iru_C           83 ANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKAT  162 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEECSEE
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceEEeeeeE
Confidence            99999999999999999999999999999999999999999988999999999999995 78999999999999999999


Q ss_pred             EEcCChHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCc---eEEecHHHHHHHHHH
Q psy1918         165 AIGSRSQSARTYLEKRLADFP-EASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQK---FKTLDERETGHYLSL  240 (251)
Q Consensus       165 a~G~g~~~a~~~L~~~~~~~~-~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~---~~~l~~~ei~~~l~~  240 (251)
                      |+|+|+..++++|++.|+  + +||++||++++++||..++++|. .++.+++|++|+++++   |++|+++||+.++..
T Consensus       163 aiGsgs~~a~~~Le~~~~--~~~ms~eeA~~la~~al~~~~~~d~-~sg~~i~v~vi~~~~~~~~~~~l~~~ei~~~l~~  239 (261)
T 1iru_C          163 CIGNNSAAAVSMLKQDYK--EGEMTLKSALALAIKVLNKTMDVSK-LSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKK  239 (261)
T ss_dssp             EESTTTTHHHHHHHHHCC--TTCCCHHHHHHHHHHHHHHSSSCTT-CCSTTCEEEEEECCSSSCEEEECCHHHHHHHHHH
T ss_pred             EeCcccHHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHhccC-CCCCcEEEEEEEcCCCeeeEEECCHHHHHHHHHH
Confidence            999999999999999998  7 99999999999999999999985 7899999999999874   899999999999999


Q ss_pred             hhhhh
Q psy1918         241 IEGEE  245 (251)
Q Consensus       241 ~~~~~  245 (251)
                      +.+++
T Consensus       240 ~~~~~  244 (261)
T 1iru_C          240 HEEEE  244 (261)
T ss_dssp             HHTTT
T ss_pred             HHhch
Confidence            96443

>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...

Probab=100.00  E-value=4.5e-62  Score=418.91  Aligned_cols=231  Identities=30%  Similarity=0.494  Sum_probs=222.0

Q ss_pred             cCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHH
Q psy1918          10 QYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADA   86 (251)
Q Consensus        10 ~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~   86 (251)
                      +||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++++.   ++.+||++|++|++|++||+.+|+
T Consensus         4 ~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~   83 (244)
T 1ryp_C            4 RYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADA   83 (244)
T ss_dssp             GGCCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHH
T ss_pred             ccCCCCceECcCCeeHHHHhHHHHHhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHHH
Confidence            89999999999999999999999999999999999999999999999999874   478999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEe-CCCCeEEEECCCCCeeeeeEEE
Q psy1918          87 RILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVKAMA  165 (251)
Q Consensus        87 ~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d-~~gp~ly~id~~G~~~~~~~~a  165 (251)
                      +.+.++++.+++.|++.++++++++.+++++++.+|.|+++.++|||++++|||||| ++||+||.+||.|++.+++++|
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~a  163 (244)
T 1ryp_C           84 EILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAIS  163 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSEEE
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccEEeeeEEE
Confidence            999999999999999999999999999999999999999999999999999999999 7889999999999999999999


Q ss_pred             EcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEe--cCCc---eEEecHHHHHHHHHH
Q psy1918         166 IGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVG--QNQK---FKTLDERETGHYLSL  240 (251)
Q Consensus       166 ~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~--~~~~---~~~l~~~ei~~~l~~  240 (251)
                      +|+|++.++++|++.|+  ++|+++||++++++||..++++|. .++.+++|++|+  +++.   |++|+++||++++..
T Consensus       164 iGsgs~~a~~~Le~~~~--~~ms~eea~~la~~al~~~~~rd~-~sg~~i~v~vi~~~~~~~~~~~~~l~~~ei~~~~~~  240 (244)
T 1ryp_C          164 VGANTSAAQTLLQMDYK--DDMKVDDAIELALKTLSKTTDSSA-LTYDRLEFATIRKGANDGEVYQKIFKPQEIKDILVK  240 (244)
T ss_dssp             ESTTHHHHHHHHHHHCC--TTCCHHHHHHHHHHHHHHHCSSSS-CCGGGEEEEEEECCSSSSSCEEEECCHHHHHHHHHH
T ss_pred             ECCCcHHHHHHHHHhhh--cCCCHHHHHHHHHHHHHHHhcccc-CCCCcEEEEEEEeecCCCceeEEECCHHHHHHHHHH
Confidence            99999999999999998  699999999999999999999964 578999999999  8876   999999999999988


Q ss_pred             hhh
Q psy1918         241 IEG  243 (251)
Q Consensus       241 ~~~  243 (251)
                      +..
T Consensus       241 ~~~  243 (244)
T 1ryp_C          241 TGI  243 (244)
T ss_dssp             HTC
T ss_pred             hhc
Confidence            764

>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...

Probab=100.00  E-value=4.4e-62  Score=418.23  Aligned_cols=233  Identities=37%  Similarity=0.567  Sum_probs=221.5

Q ss_pred             cCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHH
Q psy1918          10 QYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADA   86 (251)
Q Consensus        10 ~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~   86 (251)
                      +||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++++.   ++.+||++|++|++|+++|+.+|+
T Consensus         1 ~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~   80 (241)
T 1ryp_D            1 GYDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADS   80 (241)
T ss_dssp             CCCCCCSCCBTTTBCHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHH
T ss_pred             CCCCCceeECCCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHH
Confidence            69999999999999999999999999999999999999999999999999975   378999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC--CCCeEEEECCCCCeeeeeEE
Q psy1918          87 RILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD--AGPHIYQTCPSSNYYDVKAM  164 (251)
Q Consensus        87 ~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~--~gp~ly~id~~G~~~~~~~~  164 (251)
                      +.+.++++.+++.|++.++++++++.+++++++.++.|+++.++|||++++||||||+  +||+||.+||.|++.+++++
T Consensus        81 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~  160 (241)
T 1ryp_D           81 RILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQ  160 (241)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEE
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEeeeE
Confidence            9999999999999999999999999999999999999999989999999999999998  78999999999999999999


Q ss_pred             EEcCChHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHHhhh
Q psy1918         165 AIGSRSQSARTYLEKRLAD-FPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEG  243 (251)
Q Consensus       165 a~G~g~~~a~~~L~~~~~~-~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~~~~  243 (251)
                      |+|+|++.++++|++.|++ .++|+++||++++++||+.+++    .++++++|++|+++++|++++++||++++..+++
T Consensus       161 aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~l~~~al~~~~~----~sg~~i~v~vi~~~~~~~~l~~~ei~~~~~~~~~  236 (241)
T 1ryp_D          161 TIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQ----TGAKNIEITVVKPDSDIVALSSEEINQYVTQIEQ  236 (241)
T ss_dssp             EESTTHHHHHHHHHTTCCTTSCCCSHHHHHHHHHHHHHHHHC----SCSTTEEEEEEETTTEEEECCHHHHHHHHHHHTH
T ss_pred             EECCCcHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHhc----CCCCcEEEEEEECCCcEEECCHHHHHHHHHHHhh
Confidence            9999999999999999931 2799999999999999999984    4788999999999878999999999999999977


Q ss_pred             hhh
Q psy1918         244 EER  246 (251)
Q Consensus       244 ~~~  246 (251)
                      +++
T Consensus       237 ~~~  239 (241)
T 1ryp_D          237 EKQ  239 (241)
T ss_dssp             HHH
T ss_pred             hhc
Confidence            664

>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F

Probab=100.00  E-value=7.2e-62  Score=419.93  Aligned_cols=236  Identities=27%  Similarity=0.392  Sum_probs=223.9

Q ss_pred             cccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHHH
Q psy1918           8 RNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTAD   85 (251)
Q Consensus         8 ~~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D   85 (251)
                      .++||+++|+|||||||||||||++|+++|+|+|||+++||||||+|+|.++++.  ++.+||++|++|++|+++|+.+|
T Consensus         4 ~~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~~aD   83 (254)
T 1iru_G            4 GTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLAD   83 (254)
T ss_dssp             CSSTTSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSBEEEEEEEECSCTTBCTTTTCCEEEEETTEEEEEEECHHH
T ss_pred             ccccCCCCccCCcCCccHHHHhHHHHHhcCCCEEEEEECCEEEEEEecccCCCCcCcCcCCcEEEECCCEEEEEecChHH
Confidence            4689999999999999999999999999999999999999999999999999875  57899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEe-CCCCeEEEECCCCCeeeeeEE
Q psy1918          86 ARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVKAM  164 (251)
Q Consensus        86 ~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d-~~gp~ly~id~~G~~~~~~~~  164 (251)
                      ++.+.++++.+++.|++.++++++++.+++++++.+|.|+++++.|||++++|||||| ++||+||.+||+|++.+++++
T Consensus        84 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~  163 (254)
T 1iru_G           84 ARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGC  163 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEBSEE
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCEEeeeeE
Confidence            9999999999999999999999999999999999999999999999999999999999 778999999999999999999


Q ss_pred             EEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecC--CceEEecHHHHHHHHHHhh
Q psy1918         165 AIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQN--QKFKTLDERETGHYLSLIE  242 (251)
Q Consensus       165 a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~--~~~~~l~~~ei~~~l~~~~  242 (251)
                      |+|+|++.++++|++.|+  ++|+++||++++++||+.++++|. .++.+++|++|+++  |.|+++++++++.++..++
T Consensus       164 aiGsgs~~a~~~Le~~~~--~~ms~eea~~la~~al~~~~~~~~-~~~~~iev~vi~~~~~g~~~~l~~~~i~~~~~~~~  240 (254)
T 1iru_G          164 AIGKARQAAKTEIEKLQM--KEMTCRDIVKEVAKIIYIVHDEVK-DKAFELELSWVGELTNGRHEIVPKDIREEAEKYAK  240 (254)
T ss_dssp             EESTTHHHHHHHHTTSCG--GGCCHHHHHHHHHHHHHHHSCSSS-SCCEEEEEEECBTTTTTCCEECCHHHHHHHHHHHH
T ss_pred             EecCccHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHhhcc-CCCCcEEEEEEEcCCCCCeEECCHHHHHHHHHHHH
Confidence            999999999999999987  699999999999999999998774 57889999999987  5699999999999999887


Q ss_pred             hhhh
Q psy1918         243 GEER  246 (251)
Q Consensus       243 ~~~~  246 (251)
                      ++.+
T Consensus       241 ~~~~  244 (254)
T 1iru_G          241 ESLK  244 (254)
T ss_dssp             HHHC
T ss_pred             Hhhh
Confidence            5544

>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*

Probab=100.00  E-value=5.2e-62  Score=419.49  Aligned_cols=232  Identities=37%  Similarity=0.592  Sum_probs=221.7

Q ss_pred             CCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHHHHHH
Q psy1918          11 YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADARI   88 (251)
Q Consensus        11 yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~   88 (251)
                      ||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++++.  ++.+||++|++|++|+++|+.+|++.
T Consensus         3 yd~~~t~fsp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~   82 (248)
T 1iru_D            3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARI   82 (248)
T ss_dssp             CCCCCSCCCTTSCCHHHHHHHHHHHTSCCEEEECCSSEEEEEECCCCCCSSSCGGGGCSEEESSSSCEEEEEECHHHHHH
T ss_pred             ccCCCceECCCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecccccCccCCCCCcEEEEcCCEEEEEeecHHHHHH
Confidence            9999999999999999999999999999999999999999999999999974  46899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEe-CCCCeEEEECCCCCeeeeeEEEEc
Q psy1918          89 LARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVKAMAIG  167 (251)
Q Consensus        89 l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d-~~gp~ly~id~~G~~~~~~~~a~G  167 (251)
                      +.++++.+++.|++.++++++++.+++++++.+|.|+++.+.|||++++|||||| ++||+||.+||.|++.+++++|+|
T Consensus        83 l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG  162 (248)
T 1iru_D           83 VINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIG  162 (248)
T ss_dssp             HHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEEEES
T ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcEEEeeEEEEC
Confidence            9999999999999999999999999999999999999999999999999999999 788999999999999999999999


Q ss_pred             CChHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHHhhhhh
Q psy1918         168 SRSQSARTYLEKRLADFPEA--SLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEE  245 (251)
Q Consensus       168 ~g~~~a~~~L~~~~~~~~~~--s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~~~~~~  245 (251)
                      +|++.++++|++.|+  ++|  +++||++++++||+.+++    .++++++|++|+++|+|++++++||++++..+.+++
T Consensus       163 ~gs~~a~~~Le~~~~--~~m~~s~eea~~la~~al~~~~~----~sg~~i~v~vi~~~g~~~~l~~~ei~~~~~~~~~~~  236 (248)
T 1iru_D          163 RGAKSVREFLEKNYT--DEAIETDDLTIKLVIKALLEVVQ----SGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKEK  236 (248)
T ss_dssp             TTHHHHHHHHTTTCC--SSTTCSHHHHHHHHHHHHHTTSC----TTSTTCCEEEEESSSCEECCCHHHHHHHTTTTTTTT
T ss_pred             CCcHHHHHHHHHhhc--ccccCCHHHHHHHHHHHHHHHHc----CCCCcEEEEEEECCCcEEECCHHHHHHHHHHHHhcc
Confidence            999999999999998  699  999999999999999985    368899999999998899999999999999998665


Q ss_pred             hcc
Q psy1918         246 RRG  248 (251)
Q Consensus       246 ~~~  248 (251)
                      +.+
T Consensus       237 ~~~  239 (248)
T 1iru_D          237 EEN  239 (248)
T ss_dssp             TTT
T ss_pred             hhh
Confidence            543

>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...

Probab=100.00  E-value=2e-61  Score=414.40  Aligned_cols=232  Identities=32%  Similarity=0.493  Sum_probs=222.5

Q ss_pred             CCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHHHHHHH
Q psy1918          12 DSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADARIL   89 (251)
Q Consensus        12 d~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l   89 (251)
                      |+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++++.  ++.+||++|++|++|++||+.+|++.+
T Consensus         1 d~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l   80 (242)
T 1ryp_E            1 DRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTADARSM   80 (242)
T ss_dssp             CCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSTTBCGGGCCCEEEEETTEEEEEEESGGGHHHH
T ss_pred             CCCCceECCCCcChHHHhHHHHHHcCCCEEEEEECCEEEEEEeecCCCcCccCccCCceEEEcCCEEEEEeecHHHHHHH
Confidence            789999999999999999999999999999999999999999999999974  578999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCC------CCcceeeeeEEEEe-CCCCeEEEECCCCCeeeee
Q psy1918          90 ARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYD------KRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVK  162 (251)
Q Consensus        90 ~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~------~rP~~v~~iv~G~d-~~gp~ly~id~~G~~~~~~  162 (251)
                      .++++.+++.|++.++++++++.++++++++++.|+++.+      .|||++++|||||| ++||+||.+||.|++.+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~  160 (242)
T 1ryp_E           81 IEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYN  160 (242)
T ss_dssp             HHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEBS
T ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEeccC
Confidence            9999999999999999999999999999999999999988      89999999999999 6789999999999999999


Q ss_pred             EEEEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHHhh
Q psy1918         163 AMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIE  242 (251)
Q Consensus       163 ~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~~~  242 (251)
                      ++|+|+|+..++++|++.|+  ++||++||++++++||..+++|+  .++.+++|++|++++.|++++++||++++..+.
T Consensus       161 ~~aiGsgs~~a~~~Le~~~~--~~ms~eea~~la~~al~~~~~~~--~sg~~i~v~vi~~~~~~~~~~~~ei~~~~~~~~  236 (242)
T 1ryp_E          161 AKAIGSGSEGAQAELLNEWH--SSLTLKEAELLVLKILKQVMEEK--LDENNAQLSCITKQDGFKIYDNEKTAELIKELK  236 (242)
T ss_dssp             EEEESTTHHHHHHHHHHHCC--TTCCHHHHHHHHHHHHHHHCSSC--CCTTSEEEEEEETTTEEEECCHHHHHHHHHHHH
T ss_pred             EEEECCCCHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHHHhhcc--CCCCcEEEEEEECCCCeEECCHHHHHHHHHHHh
Confidence            99999999999999999999  69999999999999999999883  678999999999998799999999999999998


Q ss_pred             hhhhc
Q psy1918         243 GEERR  247 (251)
Q Consensus       243 ~~~~~  247 (251)
                      ++++.
T Consensus       237 ~~~~~  241 (242)
T 1ryp_E          237 EKEAA  241 (242)
T ss_dssp             HHHTT
T ss_pred             hhhcc
Confidence            87764

>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...

Probab=100.00  E-value=2.3e-60  Score=408.29  Aligned_cols=231  Identities=29%  Similarity=0.411  Sum_probs=217.0

Q ss_pred             ccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHHHH
Q psy1918           9 NQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADA   86 (251)
Q Consensus         9 ~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~   86 (251)
                      ++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++++.  +..+||++|++|++|++||+.+|+
T Consensus         2 ~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~~aD~   81 (244)
T 1ryp_G            2 TGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPDG   81 (244)
T ss_dssp             CCTTSSTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEECCCTTBCTTTSCCCEEETTTEEEEEEECHHHH
T ss_pred             CCccCCcccCCcCCchHHHHhHHHHHHCCCCEEEEEECCEEEEEEecccCCCCccccccCceEEecCCEEEEEcccHHHH
Confidence            689999999999999999999999999999999999999999999999999875  446999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEE
Q psy1918          87 RILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAI  166 (251)
Q Consensus        87 ~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~  166 (251)
                      +.+.++++.+++.|++.++++++++.+++++++.+|.|+++.+.|||++++||||||++||+||.+||+|++.+++++|+
T Consensus        82 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~ai  161 (244)
T 1ryp_G           82 RHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAAT  161 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSCEEEBSEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeCCcCEEEEECCCCCEEEeeEEEE
Confidence            99999999999999999999999999999999999999999889999999999999998999999999999999999999


Q ss_pred             cCChHHHHHHHHHh---hcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEec---CCceEEecHHHHHHHHHH
Q psy1918         167 GSRSQSARTYLEKR---LADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQ---NQKFKTLDERETGHYLSL  240 (251)
Q Consensus       167 G~g~~~a~~~L~~~---~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~---~~~~~~l~~~ei~~~l~~  240 (251)
                      |+|++.++++||+.   |+  ++||++||++++++||+.++++|. .++.+++|++|++   +| ++++.++++.+...+
T Consensus       162 G~gs~~a~~~Le~~~~~~~--~~ms~eea~~la~~al~~~~~~d~-~s~~~iev~vi~~~~~~g-~~~~~~~~~~~~~~~  237 (244)
T 1ryp_G          162 GKGRQSAKAELEKLVDHHP--EGLSAREAVKQAAKIIYLAHEDNK-EKDFELEISWCSLSETNG-LHKFVKGDLLQEAID  237 (244)
T ss_dssp             STTHHHHHHHHHHHHHHCT--TCCCHHHHHHHHHHHHHHHGGGGT-TSCEEEEEEEEETTTTTT-SEEECCTHHHHHHHH
T ss_pred             CCChHHHHHHHHHhHhhcC--CCCCHHHHHHHHHHHHHHHHhccC-CCCCeEEEEEEEecCCCC-eeeeChHHHHHHHHH
Confidence            99999999999997   87  689999999999999999999985 6888999999997   54 888888887666655


Q ss_pred             hhh
Q psy1918         241 IEG  243 (251)
Q Consensus       241 ~~~  243 (251)
                      ..+
T Consensus       238 ~~~  240 (244)
T 1ryp_G          238 FAQ  240 (244)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...

Probab=100.00  E-value=3.6e-60  Score=408.48  Aligned_cols=229  Identities=33%  Similarity=0.561  Sum_probs=216.8

Q ss_pred             ccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHHHH
Q psy1918           9 NQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADA   86 (251)
Q Consensus         9 ~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~   86 (251)
                      ++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.+.++.  ++.+||++|+++++|++||..+|+
T Consensus         3 ~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~   82 (250)
T 1ryp_B            3 DRYSFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMGPDY   82 (250)
T ss_dssp             CCCCSBSSCBCTTSCBHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCSSBCGGGCCSSEEEETTEEEEEEECHHHH
T ss_pred             CcccCCceeECCCCccHHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCCccccCcccCceEEECCCEEEEeeeCHHHH
Confidence            389999999999999999999999999999999999999999999999987664  578999999999999999999999


Q ss_pred             HHHHHHHHHHHHH-HhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeEE
Q psy1918          87 RILARFMRMECLN-YKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAM  164 (251)
Q Consensus        87 ~~l~~~l~~~~~~-~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~~  164 (251)
                      +.+.++++.+++. |+..++.+++++.+++.++++++.|+++.+.|||++++||||||+ +||+||.+||.|++.+++++
T Consensus        83 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~  162 (250)
T 1ryp_B           83 RVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKAT  162 (250)
T ss_dssp             HHHHHHHHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEBSEE
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCCEEeecee
Confidence            9999999999999 999999999999999999999999999888899999999999997 68999999999999999999


Q ss_pred             EEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecC---------------CceEEe
Q psy1918         165 AIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQN---------------QKFKTL  229 (251)
Q Consensus       165 a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~---------------~~~~~l  229 (251)
                      |+|+|++.++++|++.|+  ++|+++||++++++||+.+++++  .++++++|++|+++               ++|++|
T Consensus       163 aiGsgs~~a~~~Le~~~~--~~ms~eea~~la~~al~~~~~~~--~sg~~i~v~vi~~~~~~~~~~~~~~~~~~~~~~~l  238 (250)
T 1ryp_B          163 AIGKGSVAAKTFLEKRWN--DELELEDAIHIALLTLKESVEGE--FNGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKL  238 (250)
T ss_dssp             EESTTHHHHHHHHHHHCC--TTCCHHHHHHHHHHHHHHHCCSC--CSTTTEEEEEECSCCGGGTSEESCSSCCCCSEEEC
T ss_pred             EecCccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHhccc--cCCCCEEEEEEEccccccccccccccCCCCCeEEC
Confidence            999999999999999998  69999999999999999999875  57899999999986               249999


Q ss_pred             cHHHHHHHHHHh
Q psy1918         230 DERETGHYLSLI  241 (251)
Q Consensus       230 ~~~ei~~~l~~~  241 (251)
                      +++||+.++..+
T Consensus       239 ~~~ei~~~l~~~  250 (250)
T 1ryp_B          239 TSQEINDRLEAL  250 (250)
T ss_dssp             CHHHHHHHHTTC
T ss_pred             CHHHHHHHHHhC
Confidence            999999998653

>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*

Probab=100.00  E-value=2.6e-60  Score=415.89  Aligned_cols=228  Identities=29%  Similarity=0.420  Sum_probs=213.4

Q ss_pred             cccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHHH
Q psy1918           8 RNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTAD   85 (251)
Q Consensus         8 ~~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D   85 (251)
                      .++||+++|+|||+|||||||||++|+++|+|+|||+++||||||+|++.++++.  +..+|||+|++|++|++||+.+|
T Consensus         5 ~~~yd~~~t~fSP~Grl~QvEYA~kAv~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~~~~~KI~~I~d~i~~~~aG~~aD   84 (288)
T 3nzj_F            5 GTGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPD   84 (288)
T ss_dssp             CCCTTSSTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEEECCTTBCTTCSCCCEEETTTEEEEEEECHHH
T ss_pred             cCCccCCcccCCCCCchHHHHHHHHHHhcCCcEEEEEECCEEEEEEcCCcccCCccccccceEEEEcCCEEEEecCcHHH
Confidence            7899999999999999999999999999999999999999999999999999975  46799999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEE
Q psy1918          86 ARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMA  165 (251)
Q Consensus        86 ~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a  165 (251)
                      ++.|+++++.+++.|++.++++++++.+|+++++++|.|+++.+.|||+|++||||||++||+||.+||+|++.+++++|
T Consensus        85 ~~~l~~~lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~~a  164 (288)
T 3nzj_F           85 GRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAA  164 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSCEEEBSEEE
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeCCCCEEEEECCCCCEEEcCEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCChHHHHHHHHHh---hcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEec--CC-ceEEecHHHHHHHH
Q psy1918         166 IGSRSQSARTYLEKR---LADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQ--NQ-KFKTLDERETGHYL  238 (251)
Q Consensus       166 ~G~g~~~a~~~L~~~---~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~--~~-~~~~l~~~ei~~~l  238 (251)
                      +|++++.++++|++.   |+  ++|+++||++++++||..+++++. .++.+++|++|++  ++ .++.++.+++++..
T Consensus       165 iGsgs~~a~~~Lek~~~~~~--~~ms~eEAv~la~~al~~a~~~~~-~~~~~iev~vIt~~~~~~~~~~vp~~~~~~~~  240 (288)
T 3nzj_F          165 TGKGRQSAKAELEKLVDHHP--EGLSAREAVKQAAKIIYLAHEDNK-EKDFELEISWCSLSETNGLHKFVKGDLLQEAI  240 (288)
T ss_dssp             ESTTHHHHHHHHHHHHHHCT--TCCCHHHHHHHHHHHHHHHGGGGT-TSEEEEEEEEEETTTSTTCCEECCHHHHHHHH
T ss_pred             EcCcHHHHHHHHHHhccccC--CCCCHHHHHHHHHHHHHHHHhccc-CCCCeEEEEEEEecCCCceEEECCHHHHHHHH
Confidence            999999999999999   77  799999999999999999999874 6788999999998  33 35556665555544

>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A

Probab=100.00  E-value=6.7e-52  Score=358.41  Aligned_cols=221  Identities=15%  Similarity=0.213  Sum_probs=196.7

Q ss_pred             ceeecCCCcch-hhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccccccCceEEEcCcEEEEEeCcHHHHHHHHHHH
Q psy1918          15 VTVWSPQGRLH-QVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTADARILARFM   93 (251)
Q Consensus        15 ~t~fsp~G~l~-QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l   93 (251)
                      +..|||||++. |||||++|+++|+|+|||+++||||||+|++     .++.+|||+|++|++|+++|+.+|++.|.+.+
T Consensus         4 p~~~sPe~~~~~qvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r-----s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~   78 (259)
T 1q5q_A            4 PYYASAEQIMRDRSELARKGIARGRSVVVLTFRDGVLFVAENP-----STALHKVSELYDRLGFAAVGKYNEFENLRRAG   78 (259)
T ss_dssp             -----CHHHHHHHHHHHHHHHHTSCCEEEEECSSEEEEEECCS-----CSSSCSEEEEETTEEEEEEECHHHHHHHHHHH
T ss_pred             CcccCHHHHHHHHHHHHHHHHhcCCcEEEEEeCCEEEEEEecC-----CCCcCcEEEeCCCEEEEEccCHHHHHHHHHHH
Confidence            34689999995 9999999999999999999999999999998     35789999999999999999999999999999


Q ss_pred             HHHHHHHhhhcC-CCCCHHHHHHHHHH-HHHHhhhcCCCCcceeeeeEEEEe----CCCCeEEEECCCCCee-eeeEEEE
Q psy1918          94 RMECLNYKYAHK-DTLPVFRLISIVGN-KMQVCTQRYDKRPYGVGLLVAGYD----DAGPHIYQTCPSSNYY-DVKAMAI  166 (251)
Q Consensus        94 ~~~~~~~~~~~~-~~i~~~~la~~l~~-~~~~yt~~~~~rP~~v~~iv~G~d----~~gp~ly~id~~G~~~-~~~~~a~  166 (251)
                      +.+++.|++.++ ++++++.+++++++ +.|.|+.  +.|||+|++||||||    ++||+||.+||+|++. .++++|+
T Consensus        79 ~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt~--~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~~ai  156 (259)
T 1q5q_A           79 IVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTE--QPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVM  156 (259)
T ss_dssp             HHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHH--SSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEE
T ss_pred             HHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhcc--CCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCEEEE
Confidence            999999999988 49999999999999 6677884  568999999999999    7889999999999999 8899999


Q ss_pred             cCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhC-----CCCCCCCCCeEEEEEEecCC---ceEEecHHHHHHHH
Q psy1918         167 GSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTL-----PNDSELTTKNVSIGLVGQNQ---KFKTLDERETGHYL  238 (251)
Q Consensus       167 G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~-----~~d~~~~~~~iei~ii~~~~---~~~~l~~~ei~~~l  238 (251)
                      |++++.++++|++.|+  ++|+++||++++++||+.++     +||.  ++.+++|++|++++   +|++++++||+.++
T Consensus       157 G~gs~~a~~~Le~~~~--~~ms~eea~~la~~al~~~~~~~~~~rd~--sg~~iev~vi~~~~~~~~~~~l~~~ei~~~~  232 (259)
T 1q5q_A          157 GGTTEPIATAMRESYR--ADLDLEAAVGIAVNALRQGGAGEGEKRNV--DVASLEVAVLDQSRPRRAFRRIAGTALEQLV  232 (259)
T ss_dssp             SSSHHHHHHHHHHHCC--TTCCHHHHHHHHHHHHTTCC--------C--CSSCSEEEEEETTSSSCCEEECCHHHHHTTS
T ss_pred             CCChHHHHHHHHhhcc--CCCCHHHHHHHHHHHHHHHhhcccccccC--CCCcEEEEEEECCCCcCCeEECCHHHHHHHH
Confidence            9999999999999999  69999999999999999999     8884  78899999999986   79999999999999


Q ss_pred             HHhhhhhh
Q psy1918         239 SLIEGEER  246 (251)
Q Consensus       239 ~~~~~~~~  246 (251)
                      ..+.++++
T Consensus       233 ~~~~~~~~  240 (259)
T 1q5q_A          233 PAEPAAAS  240 (259)
T ss_dssp             CCC-----
T ss_pred             HHhhhccc
Confidence            88875543

>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D

Probab=100.00  E-value=3.4e-49  Score=338.98  Aligned_cols=213  Identities=20%  Similarity=0.256  Sum_probs=190.9

Q ss_pred             cCCCcch-hhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccccccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHH
Q psy1918          19 SPQGRLH-QVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTADARILARFMRMEC   97 (251)
Q Consensus        19 sp~G~l~-QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~   97 (251)
                      |||.-+- ++|||++|+++|+|+|||+++||||||+|++     .++.+|||+|++|++|+++|+.+|++.|.+.++.++
T Consensus         8 ~p~~~~~~r~EYA~~av~~GtT~vgi~~kdgVVlaadkr-----~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~   82 (248)
T 3mi0_A            8 SPEQAMRERSELARKGIARAKSVVALAYAGGVLFVAENP-----SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFA   82 (248)
T ss_dssp             CHHHHHHHHHHHHHHHHHTSCCEEEEEETTEEEEEEECC-----CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHH
T ss_pred             CHHHhcccchHHHHHHHhCCCcEEEEEeCCEEEEEEeCC-----CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHH
Confidence            4554443 6899999999999999999999999999998     347899999999999999999999999999999999


Q ss_pred             HHHhhhcC-CCCCHHHHHHHHH-HHHHHhhhcCCCCcceeeeeEEEEeC----CCCeEEEECCCCCeee-eeEEEEcCCh
Q psy1918          98 LNYKYAHK-DTLPVFRLISIVG-NKMQVCTQRYDKRPYGVGLLVAGYDD----AGPHIYQTCPSSNYYD-VKAMAIGSRS  170 (251)
Q Consensus        98 ~~~~~~~~-~~i~~~~la~~l~-~~~~~yt~~~~~rP~~v~~iv~G~d~----~gp~ly~id~~G~~~~-~~~~a~G~g~  170 (251)
                      +.|++.++ ++++++.++++++ .+.|.|++  +.|||+|++||||||+    +||+||++||+|++.. ++++|+|+|+
T Consensus        83 ~l~~~~~~~~~i~v~~la~~l~~~l~q~yt~--~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs  160 (248)
T 3mi0_A           83 DTRGYAYDRRDVTGRQLANVYAQTLGTIFTE--QAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTT  160 (248)
T ss_dssp             HHHHHHSCGGGCCHHHHHHHHHHHHHHHHHH--SSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEESSCH
T ss_pred             HHHHHhcCCCCCCHHHHHHHHHHHHHHHhcc--CCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEECccH
Confidence            99999999 8999999999999 67788998  5799999999999998    7899999999999995 9999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhC-------CCCCCCCCCeEEEEEEecCC---ceEEecHHHHHHHHHH
Q psy1918         171 QSARTYLEKRLADFPEASLEEIVKHGLRALRDTL-------PNDSELTTKNVSIGLVGQNQ---KFKTLDERETGHYLSL  240 (251)
Q Consensus       171 ~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~-------~~d~~~~~~~iei~ii~~~~---~~~~l~~~ei~~~l~~  240 (251)
                      +.++++||++|+  ++|+++||++++++||+.++       .++  +++++++|++|+++|   .|++|+++||+.+|.+
T Consensus       161 ~~a~~~Le~~y~--~~mt~eeai~la~~aL~~~~~~~~~~~~~~--~~~~~iev~vv~~~g~~~~f~~l~~~ei~~~l~~  236 (248)
T 3mi0_A          161 EPIANALKESYA--ENASLTDALRIAVAALRAGSADTSGGDQPT--LGVASLEVAVLDANRPRRAFRRITGSALQALLVD  236 (248)
T ss_dssp             HHHHHHHHHHCC--TTCCHHHHHHHHHHHHHHC--------------CCTTEEEEEEETTSSSCCEEECCHHHHHHTC--
T ss_pred             HHHHHHHHhhcC--CCCCHHHHHHHHHHHHHHHHhhcccCcccc--cCCCcEEEEEEECCCCcccEEECCHHHHHHHHHH
Confidence            999999999999  69999999999999999999       554  678899999999986   3999999999999988


Q ss_pred             hh
Q psy1918         241 IE  242 (251)
Q Consensus       241 ~~  242 (251)
                      +.
T Consensus       237 ~~  238 (248)
T 3mi0_A          237 QE  238 (248)
T ss_dssp             --
T ss_pred             cC
Confidence            75

>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=6.4e-48  Score=325.91  Aligned_cols=205  Identities=24%  Similarity=0.385  Sum_probs=188.1

Q ss_pred             CCcEEEeeeCCeEEEEEeccCcccc---ccccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHH
Q psy1918          37 GSATVGLKNKTHAVIIALKRAASEL---AAHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRL  113 (251)
Q Consensus        37 G~tvigi~~~dgVvla~d~~~~~~l---~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~l  113 (251)
                      |+|+|||+++||||||+|++.+++.   .++.+||++|++|++|+++|+.+|++.+.++++.+++.|++.++++++++.+
T Consensus         1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l   80 (219)
T 3h4p_a            1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC   80 (219)
T ss_dssp             -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred             CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence            7999999999999999999999874   2688999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeee-EEEEcCChHHHHHHHHHhhcCCCCCCHHH
Q psy1918         114 ISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVK-AMAIGSRSQSARTYLEKRLADFPEASLEE  191 (251)
Q Consensus       114 a~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~-~~a~G~g~~~a~~~L~~~~~~~~~~s~~e  191 (251)
                      ++++++.++.|  +  .|||++++||||||+ +||+||.+||+|++.+++ +.|+|+|++.++++|++.|+  ++|+++|
T Consensus        81 a~~l~~~~~~~--~--~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~--~~ms~ee  154 (219)
T 3h4p_a           81 ATLLSNILHSS--R--MFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYD--RDMSVEE  154 (219)
T ss_dssp             HHHHHHHHHHT--T--TTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCC--TTCCHHH
T ss_pred             HHHHHHHHHHh--c--CCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcC--CCCCHHH
Confidence            99999999766  2  479999999999998 789999999999999999 99999999999999999999  6999999


Q ss_pred             HHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHHhhhhhhccC
Q psy1918         192 IVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEERRGG  249 (251)
Q Consensus       192 a~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~~~~~~~~~~  249 (251)
                      |++++++||..++++|. .++++++|++|+++| |++|+++||+++|..++.+++.++
T Consensus       155 a~~la~~al~~~~~rd~-~sg~~i~v~vi~~~g-~~~l~~~ei~~~l~~~~~~~~~~~  210 (219)
T 3h4p_a          155 GIKLALNALKSAMERDT-FSGNGISLAVITKDG-VKIFEDEEIEKILDSMKAKPKKKT  210 (219)
T ss_dssp             HHHHHHHHHHHHHTSCS-SCCSCCCEEEEETTE-EEECCHHHHHHHHHHCC-------
T ss_pred             HHHHHHHHHHHHHhhcC-CCCCcEEEEEEeCCC-eEEcCHHHHHHHHHHhhccccccc
Confidence            99999999999999996 788999999999985 999999999999999997766543

>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H

Probab=100.00  E-value=8.3e-47  Score=318.64  Aligned_cols=203  Identities=23%  Similarity=0.401  Sum_probs=185.5

Q ss_pred             HHHhcCCcEEEeeeCCeEEEEEeccCccc-cc--cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCC
Q psy1918          32 EAVKQGSATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTL  108 (251)
Q Consensus        32 ~a~~~G~tvigi~~~dgVvla~d~~~~~~-l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i  108 (251)
                      +++++|+|+|||+++||||||+|++.+++ +.  ++.+||++|+++++|++||..+|++.+.++++.+++.|++.+++++
T Consensus         3 ~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~   82 (217)
T 1yar_H            3 QTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNM   82 (217)
T ss_dssp             ------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred             CCCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence            46789999999999999999999999986 43  5889999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCC
Q psy1918         109 PVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEAS  188 (251)
Q Consensus       109 ~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s  188 (251)
                      +++.+++++++.++.+  +  .|||++++|||||| +||+||.+||+|++.+++++|+|+|++.++++||+.|+  ++||
T Consensus        83 ~v~~la~~l~~~~~~~--r--~rp~~v~~lvaG~D-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~--~~~s  155 (217)
T 1yar_H           83 PIEAVATLLSNMLNQV--K--YMPYMVQLLVGGID-TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYS--EKMT  155 (217)
T ss_dssp             CHHHHHHHHHHHHHHT--T--TSCCCEEEEEEEES-SSEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCC--TTCC
T ss_pred             CHHHHHHHHHHHHHhc--C--CCCceEEEEEEEEC-CCCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhcc--cCCC
Confidence            9999999999999553  3  58999999999999 89999999999999999999999999999999999998  6999


Q ss_pred             HHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHHhh
Q psy1918         189 LEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIE  242 (251)
Q Consensus       189 ~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~~~  242 (251)
                      ++||++++++||+.+++||. .++++++|++|+++.++++++++||+.++..++
T Consensus       156 ~eea~~la~~al~~~~~rd~-~s~~~i~v~vi~~~~g~~~~~~~ei~~~~~~~~  208 (217)
T 1yar_H          156 VDEGVDLVIRAISAAKQRDS-ASGGMIDVAVITRKDGYVQLPTDQIESRIRKLG  208 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHCT-TCCSCCEEEEEETTTEEEECCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhccC-CCCCcEEEEEEECCCCEEEcCHHHHHHHHHHHH
Confidence            99999999999999999995 688899999999933599999999999998765

>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4

Probab=100.00  E-value=1.4e-46  Score=313.74  Aligned_cols=198  Identities=29%  Similarity=0.423  Sum_probs=186.7

Q ss_pred             CcEEEeeeCCeEEEEEeccCccc-cc--cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918          38 SATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI  114 (251)
Q Consensus        38 ~tvigi~~~dgVvla~d~~~~~~-l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la  114 (251)
                      +|+|||+++||||||+|++.+++ +.  ++.+||++|++|++|++||+.+|++.+.++++.+++.|++.++++++++.++
T Consensus         1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a   80 (202)
T 1j2q_H            1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA   80 (202)
T ss_dssp             CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence            68999999999999999999986 33  5789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeee-EEEEcCChHHHHHHHHHhhcCCCCCCHHHHH
Q psy1918         115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVK-AMAIGSRSQSARTYLEKRLADFPEASLEEIV  193 (251)
Q Consensus       115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~-~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~  193 (251)
                      +++++.++.+  +  .|||++++||||||++||+||.+||+|++.+++ ++|+|+|++.++++||+.|+  ++|+++||+
T Consensus        81 ~~l~~~~~~~--r--~rp~~~~~lvaG~D~~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~--~~~s~eea~  154 (202)
T 1j2q_H           81 TLTSNLLNSY--R--YFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFT--PEIGVDEAV  154 (202)
T ss_dssp             HHHHHHHHHT--T--TSCCCEEEEEEEEETTEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCC--TTCCHHHHH
T ss_pred             HHHHHHHHhh--C--CCCceEEEEEEEEeCCCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcC--CCcCHHHHH
Confidence            9999999653  3  589999999999999899999999999999999 99999999999999999999  699999999


Q ss_pred             HHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHHhhh
Q psy1918         194 KHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEG  243 (251)
Q Consensus       194 ~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~~~~  243 (251)
                      +++++||+.++++|. .++++++|++|+++| +++++++|+++++.+++|
T Consensus       155 ~la~~al~~~~~~d~-~s~~~i~v~vi~~~g-~~~l~~~ei~~~~~~~~~  202 (202)
T 1j2q_H          155 ELAVRAIYSAMKRDS-ASGDGIDVVKITEDE-FYQYSPEEVEQILAKFRK  202 (202)
T ss_dssp             HHHHHHHHHHHTTCT-TSCSCEEEEEECSSC-EEECHHHHHHHHGGGTTC
T ss_pred             HHHHHHHHHHHhcCC-CCCCcEEEEEEeCCC-eEEeCHHHHHHHHHHhhC
Confidence            999999999999995 688999999999985 999999999999988754

>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5

Probab=100.00  E-value=8.3e-47  Score=330.24  Aligned_cols=220  Identities=19%  Similarity=0.270  Sum_probs=190.3

Q ss_pred             cCCCcchhh------chHHHHHhcCCcEEEeeeCCeEEEEEeccCcccc---ccccCceEEEcCcEEEEEeCcHHHHHHH
Q psy1918          19 SPQGRLHQV------EYAMEAVKQGSATVGLKNKTHAVIIALKRAASEL---AAHQKKIIVIDDHMGLSFAGLTADARIL   89 (251)
Q Consensus        19 sp~G~l~Qv------Eya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l---~~~~~Ki~~i~~~i~~~~sG~~~D~~~l   89 (251)
                      ||+.-+.+.      -++..++++|+|+|||+++||||||+|+|.+++.   .++.+||++|+++++|+++|..+|++.+
T Consensus        51 ~p~~~~~~~~~~~~~~~~~~~v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l  130 (287)
T 3nzj_K           51 SPQQFLRAHTDDSRNPDCKIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFW  130 (287)
T ss_dssp             -------------------------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHH
T ss_pred             CHHHHHHHhcccccccchhhheccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHH
Confidence            555555443      2678899999999999999999999999999864   2688999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEe-CCCCeEEEECCCCCeeeeeEEEEcC
Q psy1918          90 ARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVKAMAIGS  168 (251)
Q Consensus        90 ~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d-~~gp~ly~id~~G~~~~~~~~a~G~  168 (251)
                      .++++.+++.|++.++++++++.+++++++.++.|++    +||++++|||||| ++||+||.+||.|++.++++.|+|+
T Consensus       131 ~~~lr~~~~~y~~~~~~~isv~~la~~ls~~l~~~r~----~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~AiGs  206 (287)
T 3nzj_K          131 ETWLGSQCRLHELREKERISVAAASKILSNLVYQYKG----AGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGS  206 (287)
T ss_dssp             HHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTT----SCCCEEEEEEEEETTTEEEEEEEETTCCEEECSEEEEST
T ss_pred             HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhcC----CCceEEEEEEEEcCCCCCEEEEECCCceEEEcCeEEEec
Confidence            9999999999999999999999999999999987765    3999999999999 5789999999999999999999999


Q ss_pred             ChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHHhhhhhh
Q psy1918         169 RSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEER  246 (251)
Q Consensus       169 g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~~~~~~~  246 (251)
                      |+..++++|++.|+  ++|+++||++++++||..+++||. .++++++|++|+++| |++++++||++++.++++++.
T Consensus       207 gs~~a~~~Le~~y~--~dms~eEAi~la~~aL~~a~~rD~-~sg~~i~V~vItkdg-~~~l~~~ev~~~l~~~~e~~~  280 (287)
T 3nzj_K          207 GQTFAYGVLDSNYK--WDLSVEDALYLGKRSILAAAHRDA-YSGGSVNLYHVTEDG-WIYHGNHDVGELFWKVKEEEG  280 (287)
T ss_dssp             THHHHHHHHHTSCC--TTCCHHHHHHHHHHHHHHHHHHBT-TCCSEEEEEEEETTE-EEEEEEEEHHHHHHHHHHHHC
T ss_pred             chHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHHHHhhCc-CCCCceEEEEEeCCC-EEEeCHHHHHHHHHHHHHhhc
Confidence            99999999999999  699999999999999999999996 789999999999996 999999999999999987653

>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H

Probab=100.00  E-value=1.8e-46  Score=329.11  Aligned_cols=216  Identities=21%  Similarity=0.208  Sum_probs=193.9

Q ss_pred             HHHHHhcCCcEEEeeeCCeEEEEEeccCccc-cc--cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCC
Q psy1918          30 AMEAVKQGSATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKD  106 (251)
Q Consensus        30 a~~a~~~G~tvigi~~~dgVvla~d~~~~~~-l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~  106 (251)
                      |.+|+++|+|+|||+++||||||+|++.+++ +.  ++.+|||+|+++++|+++|..+|++.+.++++.+++.|++.+++
T Consensus        58 a~~Av~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~  137 (294)
T 1q5r_H           58 SGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGV  137 (294)
T ss_dssp             --CCSCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCC
Confidence            8889999999999999999999999999985 43  57899999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCC-C-----CeEEEECCCCCeeee--eEEEEcCChHHHHHHHH
Q psy1918         107 TLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA-G-----PHIYQTCPSSNYYDV--KAMAIGSRSQSARTYLE  178 (251)
Q Consensus       107 ~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~-g-----p~ly~id~~G~~~~~--~~~a~G~g~~~a~~~L~  178 (251)
                      +++++.+++.|+++++.|+++. +|||++++||||||++ |     |+||.+||+|++.++  +++|+|+|+++++++|+
T Consensus       138 ~isv~~la~~la~~l~~~~~~~-~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~Le  216 (294)
T 1q5r_H          138 PLTFDGKANRLASMVRGNLGAA-MQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALK  216 (294)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHH-TTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhh-cCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHHH
Confidence            9999999999999999988764 7999999999999975 6     999999999999999  89999999999999999


Q ss_pred             HhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCC--eE-----EEEEEecCCceEEecHHHHHHHHHHhhhhhhccCC
Q psy1918         179 KRLADFPEASLEEIVKHGLRALRDTLPNDSELTTK--NV-----SIGLVGQNQKFKTLDERETGHYLSLIEGEERRGGG  250 (251)
Q Consensus       179 ~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~--~i-----ei~ii~~~~~~~~l~~~ei~~~l~~~~~~~~~~~~  250 (251)
                      +.|+  ++|+++||++++++||+.++++|. .++.  ++     +|++|+++| +++++++|++.+++++.++++..++
T Consensus       217 ~~y~--~~ms~eEAi~la~~aL~~a~~rD~-~sG~~~~ir~i~~ev~vI~~~g-~~~l~~~ei~~~l~~i~~~~~~~~~  291 (294)
T 1q5r_H          217 KIYS--PDSDEETALRAAIESLYDAADDDS-ATGGPDLTRGIYPTAVTITQAG-AVHVSEETTSELARRIVAERTEQGG  291 (294)
T ss_dssp             HHCC--SSCCHHHHHHHHHHHHHHHHHHCT-TTCCCBTTTTBCCEEEEEETTE-EEECCHHHHHHHHHHHCC-------
T ss_pred             Hhcc--CCCCHHHHHHHHHHHHHHHHhhcc-ccCCchhhcccCCEEEEEECCC-EEEcCHHHHHHHHHHHHHHhhhCCC
Confidence            9998  699999999999999999999986 4443  25     999999986 9999999999999999888776554

>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H

Probab=100.00  E-value=1.7e-46  Score=328.99  Aligned_cols=233  Identities=18%  Similarity=0.142  Sum_probs=173.7

Q ss_pred             cccCCCCceeecCCCcc-----hh--hchHHHHHhcCCcEEEeeeCCeEEEEEeccCcccc-c--cccCceEEEcCcEEE
Q psy1918           8 RNQYDSDVTVWSPQGRL-----HQ--VEYAMEAVKQGSATVGLKNKTHAVIIALKRAASEL-A--AHQKKIIVIDDHMGL   77 (251)
Q Consensus         8 ~~~yd~~~t~fsp~G~l-----~Q--vEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l-~--~~~~Ki~~i~~~i~~   77 (251)
                      -++|+..+...+|+.-.     +|  +|||++ +++|+|+|||+++||||||+|++.+++. .  ++.+|||+|++|++|
T Consensus        22 ~~~f~~~~~~~~~~~l~~~~~~~~~~~~ya~~-v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~  100 (291)
T 2jay_A           22 LSSFTDFLRRQAPELLPASISGGAPLAGGDAQ-LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTAT  100 (291)
T ss_dssp             -------------------------------------CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEE
T ss_pred             CccHHHHhhhcChhhccccccccCcCcccccc-ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEE
Confidence            47788888888887554     23  699999 9999999999999999999999999883 2  578999999999999


Q ss_pred             EEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCC-C-----CeEEE
Q psy1918          78 SFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA-G-----PHIYQ  151 (251)
Q Consensus        78 ~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~-g-----p~ly~  151 (251)
                      +++|..+|++.+.++++.+++.|++.++++++++.+++.++++++.|++ ..+|||+|++||||||++ +     |+||.
T Consensus       101 ~~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v~~la~~la~~l~~~~~-~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~  179 (291)
T 2jay_A          101 GIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLA-AAMQGLLALPLLAGYDIHASDPQSAGRIVS  179 (291)
T ss_dssp             EEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCHH-HHHHTCCCEEEEEEECTTCSCSTTCEEEEE
T ss_pred             EEcccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhhh-hhccccceeEEEEEEeCCCCcCCCCCEEEE
Confidence            9999999999999999999999999999999999999999999988865 357899999999999975 4     89999


Q ss_pred             ECCCCCee--eeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCe--E-----EEEEEec
Q psy1918         152 TCPSSNYY--DVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKN--V-----SIGLVGQ  222 (251)
Q Consensus       152 id~~G~~~--~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~--i-----ei~ii~~  222 (251)
                      +||+|++.  +++++|+|+|++.++++|++.|+  ++|+++||++++++||+.++++|. .+++.  +     +|++|++
T Consensus       180 iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~~~--~~ms~eEAi~la~~aL~~a~~~D~-~sg~~e~vr~~~~~v~vi~~  256 (291)
T 2jay_A          180 FDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYS--QVTDGDSGLRVAVEALYDAADDDS-ATGGPDLVRGIFPTAVIIDA  256 (291)
T ss_dssp             ECTTSCEEECSSSEEEESTTHHHHHHHHHHHGG--GCCSHHHHHHHHHHHHHHC-----------------CCEEEEEET
T ss_pred             ECCCCcEEecCCCEEEEecCHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHhhCC-CCCCcccccccCCEEEEEEC
Confidence            99999999  88999999999999999999999  699999999999999999999996 44532  1     6999999


Q ss_pred             CCceEEecHHHHHHHHHHhhhhhh
Q psy1918         223 NQKFKTLDERETGHYLSLIEGEER  246 (251)
Q Consensus       223 ~~~~~~l~~~ei~~~l~~~~~~~~  246 (251)
                      +| +++++++||+.++..+.+++.
T Consensus       257 dg-~~~l~~~ei~~~~~~~~~~~~  279 (291)
T 2jay_A          257 DG-AVDVPESRIAELARAIIESRS  279 (291)
T ss_dssp             TE-EEECCHHHHHHHHHHC-----
T ss_pred             CC-eEEcCHHHHHHHHHHHHHhhh
Confidence            85 999999999999999976653

>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K

Probab=100.00  E-value=7.1e-46  Score=309.99  Aligned_cols=200  Identities=19%  Similarity=0.282  Sum_probs=187.6

Q ss_pred             CcEEEeeeCCeEEEEEeccCccc-cc--cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918          38 SATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI  114 (251)
Q Consensus        38 ~tvigi~~~dgVvla~d~~~~~~-l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la  114 (251)
                      +|+|||+++||||||+|++.+++ +.  ++.+||++|++|++|++||+.+|++.+.+.++.+++.|++.++++++++.++
T Consensus         1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la   80 (204)
T 1iru_L            1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS   80 (204)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence            68999999999999999999985 43  5789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHHH
Q psy1918         115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVK  194 (251)
Q Consensus       115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~  194 (251)
                      +++++.++.|++    +||++++||||||++||+||.+||+|++.+++++|+|+|++.++++|++.|+  ++||++||++
T Consensus        81 ~~l~~~~~~~r~----~~~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~--~~~s~eea~~  154 (204)
T 1iru_L           81 KLLANMVYQYKG----MGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYS--YDLEVEQAYD  154 (204)
T ss_dssp             HHHHHHHHTTTT----SCCCBEEEEEEECSSSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCC--TTCCHHHHHH
T ss_pred             HHHHHHHHHhCC----CCeeEEEEEEEEeCCCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCC--CCCCHHHHHH
Confidence            999999977653    4899999999999999999999999999999999999999999999999998  6999999999


Q ss_pred             HHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHHhhhhh
Q psy1918         195 HGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEE  245 (251)
Q Consensus       195 ~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~~~~~~  245 (251)
                      ++++||+.+++||. .++++++|++|+++| +++++++|+++++.++++++
T Consensus       155 l~~~al~~~~~rd~-~s~~~i~v~vi~~~g-~~~l~~~ei~~~~~~~~~~~  203 (204)
T 1iru_L          155 LARRAIYQATYRDA-YSGGAVNLYHVREDG-WIRVSSDNVADLHEKYSGST  203 (204)
T ss_dssp             HHHHHHHHHHHHBT-TCCSEEEEEEECSSC-EEEEEEEEHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHhCc-cCCCceEEEEEeCCc-eEEeCHHHHHHHHHHhccCC
Confidence            99999999999995 789999999999985 99999999999999997654

>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M

Probab=100.00  E-value=1.2e-46  Score=318.08  Aligned_cols=204  Identities=16%  Similarity=0.153  Sum_probs=190.1

Q ss_pred             HHHHhcCCcEEEeeeCCeEEEEEeccCcccc---ccccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhh-hcCC
Q psy1918          31 MEAVKQGSATVGLKNKTHAVIIALKRAASEL---AAHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKY-AHKD  106 (251)
Q Consensus        31 ~~a~~~G~tvigi~~~dgVvla~d~~~~~~l---~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~-~~~~  106 (251)
                      ++|+++|+|+|||+++||||||+|++.+++.   .++.+||++|++|++|+++|..+|++.+.++++.+++.|++ .+++
T Consensus         2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (219)
T 1iru_N            2 QNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGH   81 (219)
T ss_dssp             CSCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred             CCCccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            3678999999999999999999999999853   26889999999999999999999999999999999999998 8999


Q ss_pred             CCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCC
Q psy1918         107 TLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE  186 (251)
Q Consensus       107 ~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~  186 (251)
                      +++++.+++++++.+  |+++.+.|||++++||||||++||+||.+||.|++.+++++|+|+|++.++++|++.|++.++
T Consensus        82 ~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~  159 (219)
T 1iru_N           82 SYSPRAIHSWLTRAM--YSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPV  159 (219)
T ss_dssp             CCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEEETTEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCSC
T ss_pred             CCCHHHHHHHHHHHH--HHhcccCCCceEEEEEEEEECCCCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCCCCC
Confidence            999999999999998  677777899999999999998899999999999999999999999999999999999983339


Q ss_pred             CCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHH
Q psy1918         187 ASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYL  238 (251)
Q Consensus       187 ~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l  238 (251)
                      ||++||++++++||..+++||. .++++++|++|+++| +++++++||+..+
T Consensus       160 mt~eea~~l~~~al~~~~~~d~-~sg~~i~v~vi~~~g-~~~~~~~~i~~~~  209 (219)
T 1iru_N          160 LSQTEARDLVERCMRVLYYRDA-RSYNRFQTATVTEKG-VEIEGPLSTETNW  209 (219)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHBT-TCCSCEEEEEEETTE-EEEEEEECCCCCC
T ss_pred             CCHHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEEcCCC-EEEcCCeeccchh
Confidence            9999999999999999999995 789999999999986 9999999987664

>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4

Probab=100.00  E-value=1.8e-45  Score=313.97  Aligned_cols=208  Identities=22%  Similarity=0.220  Sum_probs=191.8

Q ss_pred             CcEEEeeeCCeEEEEEeccCccc-cc--cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918          38 SATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI  114 (251)
Q Consensus        38 ~tvigi~~~dgVvla~d~~~~~~-l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la  114 (251)
                      +|+|||+++||||||+|++.+++ +.  ++.+||++|+++++|++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus         1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la   80 (235)
T 1q5q_H            1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA   80 (235)
T ss_dssp             CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence            68999999999999999999985 43  5789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCcceeeeeEEEEeCC-C-----CeEEEECCCCCeeee--eEEEEcCChHHHHHHHHHhhcCCCC
Q psy1918         115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA-G-----PHIYQTCPSSNYYDV--KAMAIGSRSQSARTYLEKRLADFPE  186 (251)
Q Consensus       115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~-g-----p~ly~id~~G~~~~~--~~~a~G~g~~~a~~~L~~~~~~~~~  186 (251)
                      +.|++.++.|+++. +|||++++||||||++ |     |+||.+||+|++.++  +++|+|+|++.++++|++.|+  ++
T Consensus        81 ~~l~~~~~~~~~~~-~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~--~~  157 (235)
T 1q5q_H           81 NRLASMVRGNLGAA-MQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYS--PD  157 (235)
T ss_dssp             HHHHHHHHTTHHHH-TTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCC--TT
T ss_pred             HHHHHHHHHHHHhh-hcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcC--CC
Confidence            99999999888764 7999999999999975 7     999999999999999  999999999999999999998  69


Q ss_pred             CCHHHHHHHHHHHHHhhCCCCCCCCCC-e-E-----EEEEEecCCceEEecHHHHHHHHHHhhhhhhccCC
Q psy1918         187 ASLEEIVKHGLRALRDTLPNDSELTTK-N-V-----SIGLVGQNQKFKTLDERETGHYLSLIEGEERRGGG  250 (251)
Q Consensus       187 ~s~~ea~~~~~~al~~~~~~d~~~~~~-~-i-----ei~ii~~~~~~~~l~~~ei~~~l~~~~~~~~~~~~  250 (251)
                      |+++||++++++||..++++|. .+++ . +     +|++|+++| +++++++|++.++..+.++++.+|+
T Consensus       158 ms~eeA~~la~~al~~a~~~d~-~sg~~~~i~~~~~ev~vi~~~g-~~~l~~~ei~~~~~~~~~~~~~~~~  226 (235)
T 1q5q_H          158 SDEETALRAAIESLYDAADDDS-ATGGPDLTRGIYPTAVTITQAG-AVHVSEETTSELARRIVAERTEQGG  226 (235)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHCT-TTCCCBTTTTBCCEEEEEETTE-EEECCHHHHHHHHHHHHHHHHTC--
T ss_pred             CCHHHHHHHHHHHHHHHHhhCc-ccCCcccccccccEEEEEeCCC-eEEeCHHHHHHHHHHHHHHHhhCCC
Confidence            9999999999999999999986 4443 2 2     999999986 9999999999999999988887775

>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...

Probab=100.00  E-value=2.2e-45  Score=308.83  Aligned_cols=202  Identities=18%  Similarity=0.272  Sum_probs=190.2

Q ss_pred             CcEEEeeeCCeEEEEEeccCccc-cc--cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918          38 SATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI  114 (251)
Q Consensus        38 ~tvigi~~~dgVvla~d~~~~~~-l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la  114 (251)
                      +|+|||+++||||||+|+|.+++ +.  ++.+||++|++|++|++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus         1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la   80 (212)
T 1ryp_L            1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS   80 (212)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence            68999999999999999999985 43  5789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCcceeeeeEEEEe-CCCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHH
Q psy1918         115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIV  193 (251)
Q Consensus       115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d-~~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~  193 (251)
                      +++++.++.|+++    ||++++|||||| ++||+||.+||+|++.+++++|+|+|++.++++|++.|+  ++||++||+
T Consensus        81 ~~l~~~~~~~~~~----p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~--~~~s~eea~  154 (212)
T 1ryp_L           81 KILSNLVYQYKGA----GLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYK--WDLSVEDAL  154 (212)
T ss_dssp             HHHHHHHHHTTTS----CCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCC--TTCCHHHHH
T ss_pred             HHHHHHHHhhCCC----CceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCC--CCCCHHHHH
Confidence            9999999888763    899999999999 568999999999999999999999999999999999999  699999999


Q ss_pred             HHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHHhhhhhhc
Q psy1918         194 KHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEERR  247 (251)
Q Consensus       194 ~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~~~~~~~~  247 (251)
                      +++++||+.+++||. .++.+++|++|+++| +++++++|++.++.+++++++.
T Consensus       155 ~la~~al~~~~~rd~-~s~~~i~v~vi~~~g-~~~~~~~ei~~~~~~~~~~~~~  206 (212)
T 1ryp_L          155 YLGKRSILAAAHRDA-YSGGSVNLYHVTEDG-WIYHGNHDVGELFWKVKEEEGS  206 (212)
T ss_dssp             HHHHHHHHHHHHHBT-TCCSEEEEEEEETTE-EEEEEEEEHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHhcc-ccCCceEEEEEcCCc-eEEECHHHHHHHHHHHHHhhhh
Confidence            999999999999995 789999999999985 9999999999999999876653

>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...

Probab=100.00  E-value=3e-46  Score=318.45  Aligned_cols=204  Identities=14%  Similarity=0.212  Sum_probs=189.8

Q ss_pred             HHHHhcCCcEEEeeeCCeEEEEEeccCcccc-c--cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhh-----
Q psy1918          31 MEAVKQGSATVGLKNKTHAVIIALKRAASEL-A--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKY-----  102 (251)
Q Consensus        31 ~~a~~~G~tvigi~~~dgVvla~d~~~~~~l-~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~-----  102 (251)
                      ++|+++|+|+|||+++||||||+|++.+++. .  ++.+||++|++|++|++||..+|++.+.++++.+++.|++     
T Consensus         2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~   81 (233)
T 1ryp_N            2 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLA   81 (233)
T ss_dssp             CCCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred             cccccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchh
Confidence            3578899999999999999999999999863 2  5789999999999999999999999999999999999999     


Q ss_pred             hcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCC-CCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhh
Q psy1918         103 AHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA-GPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRL  181 (251)
Q Consensus       103 ~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~-gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~  181 (251)
                      .++++++++.+++++++.+  |+++.+.|||++++||||||++ ||+||.+||.|++.++++.|+|+|++.++++|++.|
T Consensus        82 ~~~~~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~  159 (233)
T 1ryp_N           82 DAEEALEPSYIFEYLATVM--YQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVV  159 (233)
T ss_dssp             TTTTSCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTC
T ss_pred             hcCCCCCHHHHHHHHHHHH--HHhcCCCCCceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhh
Confidence            8999999999999999998  7777778999999999999975 899999999999999999999999999999999999


Q ss_pred             cCCC---CCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHH
Q psy1918         182 ADFP---EASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHY  237 (251)
Q Consensus       182 ~~~~---~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~  237 (251)
                      ++.+   +||++||++++++||+.+++||. .++++++|++|++++++++++++||+.+
T Consensus       160 ~~~~~~~~ms~eea~~la~~al~~~~~rd~-~sg~~i~v~vi~~~~g~~~~~~~~i~~~  217 (233)
T 1ryp_N          160 DRESDIPKTTVQVAEEAIVNAMRVLYYRDA-RSSRNFSLAIIDKNTGLTFKKNLQVENM  217 (233)
T ss_dssp             SSGGGGGGCCHHHHHHHHHHHHHHHHHHBT-TCCSEEEEEEEETTTEEEEEEEEECCSC
T ss_pred             ccccccCCCCHHHHHHHHHHHHHHHHHhcc-cCCCcEEEEEEECCCCeEEcChHhcccc
Confidence            8311   89999999999999999999996 7899999999999844999999999877

>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N

Probab=100.00  E-value=8.2e-45  Score=303.78  Aligned_cols=194  Identities=14%  Similarity=0.137  Sum_probs=182.9

Q ss_pred             CcEEEeeeCCeEEEEEeccCccc-cc--cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918          38 SATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI  114 (251)
Q Consensus        38 ~tvigi~~~dgVvla~d~~~~~~-l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la  114 (251)
                      +|+|||+++||||||+|+|.+++ +.  ++.+||++|++|++|++||+.+|++.+.++++.+++.|++.++++++++.++
T Consensus         1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la   80 (205)
T 1iru_H            1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA   80 (205)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred             CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            68999999999999999999998 43  5789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHH
Q psy1918         115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIV  193 (251)
Q Consensus       115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~  193 (251)
                      +++++.++.|++     ||++++||||||+ +||+||.+||.|++.+++++++|+|++.++++||+.|+  ++|+++||+
T Consensus        81 ~~l~~~~~~~~~-----p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~--~~~s~eea~  153 (205)
T 1iru_H           81 SLFKEMCYRYRE-----DLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYR--EGMTKEECL  153 (205)
T ss_dssp             HHHHHHHHHTTT-----TCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCC--TTCCHHHHH
T ss_pred             HHHHHHHHhcCc-----CccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcC--CCCCHHHHH
Confidence            999999987764     9999999999997 78999999999999999999999999999999999998  699999999


Q ss_pred             HHHHHHHHhhCCCCCCCCCCeEEEEEEecCCc-eEEecHHHHHHHHH
Q psy1918         194 KHGLRALRDTLPNDSELTTKNVSIGLVGQNQK-FKTLDERETGHYLS  239 (251)
Q Consensus       194 ~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~-~~~l~~~ei~~~l~  239 (251)
                      +++++||+.++++|. .++.+++|++|+++|. +++++++||++++.
T Consensus       154 ~l~~~al~~~~~~d~-~s~~~i~v~vi~~~g~~~~~l~~~ei~~~~~  199 (205)
T 1iru_H          154 QFTANALALAMERDG-SSGGVIRLAAIAESGVERQVLLGDQIPKFAV  199 (205)
T ss_dssp             HHHHHHHHHHHHHBT-TCCSCEEEEEEETTEEEEEEECGGGSCCCCC
T ss_pred             HHHHHHHHHHHHhcc-ccCCcEEEEEEeCCCeEEEEeChHHhhHHHh
Confidence            999999999999995 7899999999999974 78999999987764

>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2

Probab=100.00  E-value=6.9e-44  Score=308.10  Aligned_cols=196  Identities=20%  Similarity=0.203  Sum_probs=175.6

Q ss_pred             HHHHHhcCCcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCC
Q psy1918          30 AMEAVKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKD  106 (251)
Q Consensus        30 a~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~  106 (251)
                      +.+|+++|+|+|||+++||||||+|++.+++..   ++.+||++|++|++|++||..+|++.+.+.++.+++.|++.+++
T Consensus        22 ~~kav~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~  101 (261)
T 3nzj_H           22 QPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSR  101 (261)
T ss_dssp             --------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             CCcccccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCC
Confidence            367899999999999999999999999998742   58899999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCC
Q psy1918         107 TLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE  186 (251)
Q Consensus       107 ~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~  186 (251)
                      +++++.+++++++.++.|     .+||++++||||||++||+||.+||+|++.++++.|+|+|++.++++||+.|+  ++
T Consensus       102 ~~~v~~~a~~l~~~l~~~-----~~~~gv~llvaG~D~~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~--~~  174 (261)
T 3nzj_H          102 EPRVVSALQMLKQHLFKY-----QGHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWK--QD  174 (261)
T ss_dssp             CCCHHHHHHHHHHHHHHT-----TTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCC--SS
T ss_pred             CCCHHHHHHHHHHHHHHh-----cCcccEEEEEEEEeCCCCEEEEECCCccEEecCeEEeccchHHHHHHHHHHhc--cC
Confidence            999999999999988443     36999999999999999999999999999999999999999999999999998  69


Q ss_pred             CCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHH
Q psy1918         187 ASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERE  233 (251)
Q Consensus       187 ~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~e  233 (251)
                      |++|||++++++||..++.+|. .++++++|++|+++|.++++.+..
T Consensus       175 ms~eEA~~la~~al~~a~~rD~-~sg~~iev~vI~kdg~~~~~~~~~  220 (261)
T 3nzj_H          175 LTKEEAIKLASDAIQAGIWNDL-GSGSNVDVCVMEIGKDAEYLRNYL  220 (261)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHCT-TCCSCEEEEEEETTSCEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHhhCC-CCCCcEEEEEEECCCcEEEecccc
Confidence            9999999999999999999996 789999999999998677665533

>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*

Probab=100.00  E-value=1.5e-45  Score=319.87  Aligned_cols=208  Identities=14%  Similarity=0.206  Sum_probs=191.4

Q ss_pred             hchHHHHHhcCCcEEEeeeCCeEEEEEeccCcccc-c--cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhh-
Q psy1918          27 VEYAMEAVKQGSATVGLKNKTHAVIIALKRAASEL-A--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKY-  102 (251)
Q Consensus        27 vEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l-~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~-  102 (251)
                      .+.+++++++|+|+|||+++||||||+|++.+++. .  ++.+||++|+++++|+++|..+|++.|.++++.+++.|++ 
T Consensus        31 ~~~~~~av~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~  110 (266)
T 1g0u_M           31 MVNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYD  110 (266)
T ss_dssp             ---CCCCCEEECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhhccCcccCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhc
Confidence            46778899999999999999999999999999863 2  5789999999999999999999999999999999999998 


Q ss_pred             ----hcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCC-CCeEEEECCCCCeeeeeEEEEcCChHHHHHHH
Q psy1918         103 ----AHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA-GPHIYQTCPSSNYYDVKAMAIGSRSQSARTYL  177 (251)
Q Consensus       103 ----~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~-gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L  177 (251)
                          .++++++++.+++++++.+  |+++.+.|||++++||||||++ ||+||.+||.|++.++++.|+|+|+..++++|
T Consensus       111 ~~~~~~~~~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~L  188 (266)
T 1g0u_M          111 NPLADAEEALEPSYIFEYLATVM--YQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLL  188 (266)
T ss_dssp             CTTTTTTTSCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHHHHH
T ss_pred             cchhhcCCCCCHHHHHHHHHHHH--HHhccCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHHHHHH
Confidence                8999999999999999998  7777778999999999999975 89999999999999999999999999999999


Q ss_pred             HHhhcCCC---CCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHH
Q psy1918         178 EKRLADFP---EASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHY  237 (251)
Q Consensus       178 ~~~~~~~~---~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~  237 (251)
                      |+.|++.+   +||++||++++++||+.+++||. .++.+++|++|++++++++++++||+.+
T Consensus       189 e~~~~~~~~~~~ms~eeA~~la~~al~~a~~rd~-~sg~~i~v~vI~k~~g~~~~~~~ei~~~  250 (266)
T 1g0u_M          189 RKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDA-RSSRNFSLAIIDKNTGLTFKKNLQVENM  250 (266)
T ss_dssp             TTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBT-TCCSEEEEEEEETTTEEEEEEEEECCCC
T ss_pred             HHhhcccccCCCCCHHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEECCCCeEEcCHHHhhhh
Confidence            99998311   89999999999999999999996 7899999999999834999999998877

>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L

Probab=100.00  E-value=1.2e-43  Score=298.33  Aligned_cols=189  Identities=17%  Similarity=0.256  Sum_probs=175.5

Q ss_pred             HhcCCcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCH
Q psy1918          34 VKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPV  110 (251)
Q Consensus        34 ~~~G~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~  110 (251)
                      +++|+|+|||+++||||||+|++.++++.   ++.+||++|+++++|++||+.+|++.+.++++.+++.|++.+++++++
T Consensus         6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v   85 (213)
T 1iru_M            6 VFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTT   85 (213)
T ss_dssp             CCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred             cCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCCH
Confidence            57899999999999999999999999873   578999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCC-CeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcC------
Q psy1918         111 FRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAG-PHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLAD------  183 (251)
Q Consensus       111 ~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~g-p~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~------  183 (251)
                      +.+++++++.+  |+++  .|||++++||||||++| |+||.+||.|++.+++++|+|+|++.++++||+.|++      
T Consensus        86 ~~la~~l~~~~--y~~r--~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~~  161 (213)
T 1iru_M           86 GAIAAMLSTIL--YSRR--FFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNV  161 (213)
T ss_dssp             HHHHHHHHHHH--HHTT--TSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSSC
T ss_pred             HHHHHHHHHHH--HhhC--CCCceEEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhcccccccccc
Confidence            99999999999  7876  58999999999999755 9999999999999999999999999999999999432      


Q ss_pred             C-CCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEE
Q psy1918         184 F-PEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKT  228 (251)
Q Consensus       184 ~-~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~  228 (251)
                      + ++||++||++++++||..++++|. .++.+++|++|+++| +++
T Consensus       162 ~~~~~s~eea~~l~~~al~~~~~~d~-~s~~~i~v~vi~~~g-~~~  205 (213)
T 1iru_M          162 EHVPLSLDRAMRLVKDVFISAAERDV-YTGDALRICIVTKEG-IRE  205 (213)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHHHHHBT-TSCSEEEEEEEETTE-EEE
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhCC-ccCCcEEEEEEcCCC-eEE
Confidence            1 699999999999999999999995 789999999999986 443

>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H

Probab=100.00  E-value=4.2e-44  Score=305.17  Aligned_cols=190  Identities=22%  Similarity=0.251  Sum_probs=179.6

Q ss_pred             CcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918          38 SATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI  114 (251)
Q Consensus        38 ~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la  114 (251)
                      +|+|||+++||||||+|+|.++++.   ++.+|||+|++|++|++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus         1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la   80 (234)
T 3unf_H            1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT   80 (234)
T ss_dssp             CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred             CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence            6899999999999999999999873   5789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHHH
Q psy1918         115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVK  194 (251)
Q Consensus       115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~  194 (251)
                      +++++.++.|     .+||++++||||||++||+||.+||+|++.++++.|+|+|++.++++||+.|+  ++|+++||++
T Consensus        81 ~~l~~~l~~~-----~~p~~v~llvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~--~~ms~eeA~~  153 (234)
T 3unf_H           81 RILRQTLFRY-----QGHVGASLVVGGVDLNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQ--PNMTLEAAQE  153 (234)
T ss_dssp             HHHHHHHHHT-----TTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCC--SSCCHHHHHH
T ss_pred             HHHHHHHHhc-----CCCccEEEEEEEEeCCCCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccC--CCCCHHHHHH
Confidence            9999998654     25999999999999999999999999999999999999999999999999998  6999999999


Q ss_pred             HHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHH
Q psy1918         195 HGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGH  236 (251)
Q Consensus       195 ~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~  236 (251)
                      ++++||+.++.+|. .++++++|++|+++| ++++++.++++
T Consensus       154 la~~al~~~~~~D~-~sg~~iev~vi~~dg-~~~l~~~~i~~  193 (234)
T 3unf_H          154 LLVEAITAGILSDL-GSGGNVDACVITAGG-AKLQRALSTPT  193 (234)
T ss_dssp             HHHHHHHHHHHHBT-TCCSCEEEEEEESSC-EEEEEEEECCC
T ss_pred             HHHHHHHHHHhhcC-CCCCcEEEEEEECCC-EEEeCceeccc
Confidence            99999999999996 789999999999995 99999988764

>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...

Probab=100.00  E-value=1.4e-43  Score=294.67  Aligned_cols=188  Identities=19%  Similarity=0.302  Sum_probs=176.5

Q ss_pred             CcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918          38 SATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI  114 (251)
Q Consensus        38 ~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la  114 (251)
                      +|+|||+++||||||+|++.++++.   ++.+||++|++|++|++||+.+|++.+.++++.+++.|++.++++++++.++
T Consensus         2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la   81 (198)
T 1ryp_K            2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVS   81 (198)
T ss_dssp             CCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred             ceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence            6899999999999999999998863   4789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCcceeeeeEEEEeC--CCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHH
Q psy1918         115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDD--AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEI  192 (251)
Q Consensus       115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~--~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea  192 (251)
                      +++++.++.|++.  ++||++++||||||+  +||+||.+||+|++.+++++|+|+|++.++++|++.|+  ++||++||
T Consensus        82 ~~l~~~l~~~~~~--r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~--~~~s~eea  157 (198)
T 1ryp_K           82 SFVRQELAKSIRS--RRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYR--PDMTTEEG  157 (198)
T ss_dssp             HHHHHHHHHHTTS--SSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCC--TTCCHHHH
T ss_pred             HHHHHHHHHhccc--CCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcC--CCCCHHHH
Confidence            9999999887743  249999999999995  78999999999999999999999999999999999998  69999999


Q ss_pred             HHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecH
Q psy1918         193 VKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDE  231 (251)
Q Consensus       193 ~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~  231 (251)
                      ++++++||..+.++|. .++++++|++|+++| ++++++
T Consensus       158 ~~l~~~al~~~~~~d~-~s~~~i~v~vi~~~g-~~~~~~  194 (198)
T 1ryp_K          158 LDLLKLCVQELEKRMP-MDFKGVIVKIVDKDG-IRQVDD  194 (198)
T ss_dssp             HHHHHHHHHHHHHHCS-BCCCCEEEEEEETTE-EEEECC
T ss_pred             HHHHHHHHHHHHHhCc-cCCCceEEEEEcCCC-EEEecc
Confidence            9999999999999995 789999999999985 888875

>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...

Probab=100.00  E-value=1.3e-43  Score=296.55  Aligned_cols=186  Identities=17%  Similarity=0.175  Sum_probs=175.8

Q ss_pred             HHHHhcCCcEEEeeeCCeEEEEEeccCccc-cc--cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy1918          31 MEAVKQGSATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDT  107 (251)
Q Consensus        31 ~~a~~~G~tvigi~~~dgVvla~d~~~~~~-l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~  107 (251)
                      .+++++|+|+|||+++||||||+|+|.+++ +.  ++.+||++|++|++|++||..+|++.+.++++.+++.|++.+++ 
T Consensus         3 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~-   81 (205)
T 1ryp_H            3 KGEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT-   81 (205)
T ss_dssp             TTCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred             CCCCcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence            578999999999999999999999999998 43  57899999999999999999999999999999999999999999 


Q ss_pred             CCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCC
Q psy1918         108 LPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE  186 (251)
Q Consensus       108 i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~  186 (251)
                      ++++.+++++++.++.|+++     |++++||||||+ +||+||.+||.|++.+++++|+|+|++.++++||+.|+  ++
T Consensus        82 ~~v~~la~~l~~~~~~~~~~-----~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~--~~  154 (205)
T 1ryp_H           82 PSTETAASVFKELCYENKDN-----LTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFR--EN  154 (205)
T ss_dssp             CCHHHHHHHHHHHHHHTTTT-----CCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCC--TT
T ss_pred             CCHHHHHHHHHHHHHhhhcC-----ceEEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccC--CC
Confidence            99999999999999888652     899999999997 78999999999999999999999999999999999998  69


Q ss_pred             CCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCc
Q psy1918         187 ASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQK  225 (251)
Q Consensus       187 ~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~  225 (251)
                      ||++||++++++||+.+++||. .++++++|++|+++|.
T Consensus       155 ~s~eea~~l~~~al~~a~~~d~-~sg~~i~v~vi~~~g~  192 (205)
T 1ryp_H          155 MSKEETVDFIKHSLSQAIKWDG-SSGGVIRMVVLTAAGV  192 (205)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHBT-TCCSCEEEEEEETTEE
T ss_pred             CCHHHHHHHHHHHHHHHHHhCC-ccCCeEEEEEEcCCCE
Confidence            9999999999999999999995 7899999999999873

>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...

Probab=100.00  E-value=8.3e-43  Score=295.14  Aligned_cols=187  Identities=19%  Similarity=0.296  Sum_probs=174.9

Q ss_pred             HhcCCcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcC-CCCC
Q psy1918          34 VKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHK-DTLP  109 (251)
Q Consensus        34 ~~~G~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~-~~i~  109 (251)
                      +++|+|+|||+++||||||+|++.++++.   ++.+||++|+++++|++||..+|++.+.++++.+++.|++.++ ++++
T Consensus         6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~   85 (222)
T 1ryp_M            6 GDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLS   85 (222)
T ss_dssp             CCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred             ccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            57899999999999999999999999863   5789999999999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCC-CeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHh--------
Q psy1918         110 VFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAG-PHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKR--------  180 (251)
Q Consensus       110 ~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~g-p~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~--------  180 (251)
                      ++.+|+++++.+  |+++  .+||++++||||||++| |+||.+||.|++.+++++|+|+|+..++++|++.        
T Consensus        86 v~~la~~l~~~l--y~~r--~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~~  161 (222)
T 1ryp_M           86 INSAARNIQHLL--YGKR--FFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYE  161 (222)
T ss_dssp             HHHHHHHHHHHH--HTTT--TSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCBC
T ss_pred             HHHHHHHHHHHH--HhcC--CCCceEEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhcccccccccc
Confidence            999999999998  7765  47999999999999755 9999999999999999999999999999999998        


Q ss_pred             ---------hcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEE
Q psy1918         181 ---------LADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKT  228 (251)
Q Consensus       181 ---------~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~  228 (251)
                               |+  ++|+++||++++++||..+++||. .++++++|++|+++| ++.
T Consensus       162 ~~~~~~~~~~~--~~~s~eeA~~la~~al~~a~~rd~-~sg~~i~v~vi~~~g-~~~  214 (222)
T 1ryp_M          162 PGTNGKVKKPL--KYLSVEEVIKLVRDSFTSATERHI-QVGDGLEILIVTKDG-VRK  214 (222)
T ss_dssp             TTSTTCSBCCC--CCCCHHHHHHHHHHHHHHHHHHBT-TCCSEEEEEEEETTE-EEE
T ss_pred             cccccccccCC--CCCCHHHHHHHHHHHHHHHHHhcc-cCCCcEEEEEEcCCC-eEE
Confidence                     55  699999999999999999999996 789999999999986 443

>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I

Probab=100.00  E-value=1.6e-42  Score=289.89  Aligned_cols=184  Identities=18%  Similarity=0.296  Sum_probs=173.0

Q ss_pred             HhcCCcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCH
Q psy1918          34 VKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPV  110 (251)
Q Consensus        34 ~~~G~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~  110 (251)
                      +.+|+|+|||+++||||||+|++.++++.   ++.+||++|++|++|++||..+|++.+.++++.+++.|++.+++++++
T Consensus         5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v   84 (205)
T 1iru_J            5 SYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKP   84 (205)
T ss_dssp             TSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCH
T ss_pred             cCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCH
Confidence            36899999999999999999999999874   478999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC--CCCeEEEECCCCCeeee-eEEEEcCChHHHHHHHHHhhcCCCCC
Q psy1918         111 FRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD--AGPHIYQTCPSSNYYDV-KAMAIGSRSQSARTYLEKRLADFPEA  187 (251)
Q Consensus       111 ~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~--~gp~ly~id~~G~~~~~-~~~a~G~g~~~a~~~L~~~~~~~~~~  187 (251)
                      +.+++++++.+  |+++.  .||++++||||||+  +||+||.+||.|++..+ .++|+|+|++.++++||+.|+  ++|
T Consensus        85 ~~la~~l~~~~--y~~r~--~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~--~~~  158 (205)
T 1iru_J           85 YTLMSMVANLL--YEKRF--GPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWE--PNM  158 (205)
T ss_dssp             HHHHHHHHHHH--HTTTT--SCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCC--SSC
T ss_pred             HHHHHHHHHHH--HHhcC--CCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccC--CCC
Confidence            99999999999  88874  49999999999994  78999999999999655 679999999999999999998  699


Q ss_pred             CHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCC
Q psy1918         188 SLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQ  224 (251)
Q Consensus       188 s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~  224 (251)
                      |++||++++++||+.++++|. .++.+++|++|+++|
T Consensus       159 s~eea~~l~~~al~~~~~~d~-~s~~~i~v~vi~~~g  194 (205)
T 1iru_J          159 DPDHLFETISQAMLNAVDRDA-VSGMGVIVHIIEKDK  194 (205)
T ss_dssp             CHHHHHHHHHHHHHHHGGGBT-TSCSCEEEEEEESSB
T ss_pred             CHHHHHHHHHHHHHHHHHhCc-ccCCceEEEEEcCCC
Confidence            999999999999999999995 789999999999987

>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...

Probab=100.00  E-value=1.3e-42  Score=293.95  Aligned_cols=188  Identities=20%  Similarity=0.198  Sum_probs=175.7

Q ss_pred             CcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918          38 SATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI  114 (251)
Q Consensus        38 ~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la  114 (251)
                      +|+|||+++||||||+|+|.++++.   ++.+||++|++|++|++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus         1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a   80 (222)
T 1ryp_I            1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL   80 (222)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred             CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence            6899999999999999999999863   4789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHHH
Q psy1918         115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVK  194 (251)
Q Consensus       115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~  194 (251)
                      +++++.++.|     .|||++++||||||++||+||.+||+|++.+++++|+|+|++.++++||+.|+  ++|+++||++
T Consensus        81 ~~l~~~l~~~-----~~p~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~--~~ms~eeA~~  153 (222)
T 1ryp_I           81 QMLKQHLFKY-----QGHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWK--QDLTKEEAIK  153 (222)
T ss_dssp             HHHHHHHHHT-----TTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCC--SSCCHHHHHH
T ss_pred             HHHHHHHhhc-----CCCCCeeEEEEEEeCCCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCC--CCcCHHHHHH
Confidence            9999998554     37999999999999999999999999999999999999999999999999998  6999999999


Q ss_pred             HHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHH
Q psy1918         195 HGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERE  233 (251)
Q Consensus       195 ~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~e  233 (251)
                      ++++||+.++++|. .++++++|++|+++++++++.+.+
T Consensus       154 la~~al~~~~~~d~-~sg~~i~v~vi~~~g~~~~~~~~~  191 (222)
T 1ryp_I          154 LASDAIQAGIWNDL-GSGSNVDVCVMEIGKDAEYLRNYL  191 (222)
T ss_dssp             HHHHHHHHHHHHCT-TCCSCEEEEEEETTSCEEEEEEEE
T ss_pred             HHHHHHHHHHhccc-cCCCcEEEEEEECCCCEEEEecee
Confidence            99999999999995 689999999999986588775544

>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...

Probab=100.00  E-value=3.1e-42  Score=287.93  Aligned_cols=183  Identities=20%  Similarity=0.270  Sum_probs=172.4

Q ss_pred             HhcCCcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCH
Q psy1918          34 VKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPV  110 (251)
Q Consensus        34 ~~~G~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~  110 (251)
                      +.+|+|+|||+++||||||+|++.++++.   ++.+||++|+ |++|+++|..+|++.+.++++.+++.|++.+++++++
T Consensus         5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v   83 (204)
T 1ryp_J            5 SINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEP   83 (204)
T ss_dssp             GSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred             CCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCCH
Confidence            56899999999999999999999999874   4789999999 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC--CCCeEEEECCCCCeeee-eEEEEcCChHHHHHHHHHhhcCCCCC
Q psy1918         111 FRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD--AGPHIYQTCPSSNYYDV-KAMAIGSRSQSARTYLEKRLADFPEA  187 (251)
Q Consensus       111 ~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~--~gp~ly~id~~G~~~~~-~~~a~G~g~~~a~~~L~~~~~~~~~~  187 (251)
                      +.+++++++.+  |+++.+  ||++++||||||+  +||+||.+||.|++..+ .++|+|+|++.++++||+.|+  ++|
T Consensus        84 ~~la~~l~~~~--y~~~~~--P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~--~~~  157 (204)
T 1ryp_J           84 ETFTQLVSSSL--YERRFG--PYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYE--PNL  157 (204)
T ss_dssp             HHHHHHHHHHH--HTTTTS--CCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCC--SSC
T ss_pred             HHHHHHHHHHH--HHhcCC--CceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcC--CCc
Confidence            99999999999  888754  9999999999995  78999999999999655 679999999999999999998  699


Q ss_pred             CHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCC
Q psy1918         188 SLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQ  224 (251)
Q Consensus       188 s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~  224 (251)
                      +++||++++++||..++++|. .++.+++|++|+++|
T Consensus       158 s~eea~~l~~~al~~~~~~d~-~s~~~i~v~vi~~~g  193 (204)
T 1ryp_J          158 EPEDLFETISQALLNAADRDA-LSGWGAVVYIIKKDE  193 (204)
T ss_dssp             CHHHHHHHHHHHHHHHHTTBT-TSCSCEEEEEEESSC
T ss_pred             CHHHHHHHHHHHHHHHHHhCc-ccCCcEEEEEEcCCC
Confidence            999999999999999999995 789999999999987

>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N

Probab=100.00  E-value=5.9e-43  Score=291.14  Aligned_cols=191  Identities=15%  Similarity=0.151  Sum_probs=176.3

Q ss_pred             CcEEEeeeCCeEEEEEeccCccc-cc--cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918          38 SATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI  114 (251)
Q Consensus        38 ~tvigi~~~dgVvla~d~~~~~~-l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la  114 (251)
                      ||+|||+++||||||+|++.+++ +.  ++.+||++|++|++|+++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus         1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a   80 (199)
T 3unf_N            1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA   80 (199)
T ss_dssp             CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred             CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            68999999999999999999988 42  6889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeee-eEEEEcCChHHHHHHHHHhhcCCCCCCHHHH
Q psy1918         115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDV-KAMAIGSRSQSARTYLEKRLADFPEASLEEI  192 (251)
Q Consensus       115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~-~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea  192 (251)
                      +++++.++.|     +|||++++||||||+ +||+||.  |+|++..+ .++++|+|++.++++||+.|+  ++|+++||
T Consensus        81 ~~l~~~l~~~-----~~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~--~~ms~eea  151 (199)
T 3unf_N           81 NVVKNISYKY-----REDLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYK--PGMTPEEC  151 (199)
T ss_dssp             HHHHHHHHHT-----TTTCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCC--SSCCHHHH
T ss_pred             HHHHHHHHhc-----CCCceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcC--CCCCHHHH
Confidence            9999999654     369999999999997 6799999  99997666 566679999999999999999  79999999


Q ss_pred             HHHHHHHHHhhCCCCCCCCCCeEEEEEEecCC-ceEEecHHHHHHHH
Q psy1918         193 VKHGLRALRDTLPNDSELTTKNVSIGLVGQNQ-KFKTLDERETGHYL  238 (251)
Q Consensus       193 ~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~-~~~~l~~~ei~~~l  238 (251)
                      ++++++||+.++++|. .++++++|++|+++| .+++|+++||++++
T Consensus       152 ~~la~~al~~~~~~d~-~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~  197 (199)
T 3unf_N          152 RRFTTNAITLAMNRDG-SSGGVIYLVTITAAGVDHRVILGDELPKFY  197 (199)
T ss_dssp             HHHHHHHHHHHHHHCT-TCCSCEEEEEECSSCEEEEEECGGGSCCCC
T ss_pred             HHHHHHHHHHHHHhcc-ccCCCeEEEEEcCCCEEEEEcCcccCcccc
Confidence            9999999999999996 788999999999997 58899999998765

>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J

Probab=100.00  E-value=1.1e-41  Score=283.88  Aligned_cols=188  Identities=20%  Similarity=0.288  Sum_probs=172.0

Q ss_pred             CcEEEeeeCCeEEEEEeccCccc-cc--cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918          38 SATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI  114 (251)
Q Consensus        38 ~tvigi~~~dgVvla~d~~~~~~-l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la  114 (251)
                      +|+|||+++||||||+|++.+++ +.  ++.+||++|++|++|++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus         2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a   81 (201)
T 1iru_K            2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAA   81 (201)
T ss_dssp             CCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             ceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence            68999999999999999999986 43  5889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHH
Q psy1918         115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIV  193 (251)
Q Consensus       115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~  193 (251)
                      +++++.+. |..+. .|||++++||||||+ +||+||.+||.|++.+++++|+|+|++.++++||+.|+  ++||++||+
T Consensus        82 ~~~~~~l~-~~~~~-~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~--~~~s~eea~  157 (201)
T 1iru_K           82 NFTRRNLA-DCLRS-RTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYT--PTISRERAV  157 (201)
T ss_dssp             HHHHHHHH-HHHTS-SSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCC--TTCCHHHHH
T ss_pred             HHHHHHHH-HHHhc-CCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhccc--CCCCHHHHH
Confidence            99987653 22222 379999999999997 68999999999999999999999999999999999998  699999999


Q ss_pred             HHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecH
Q psy1918         194 KHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDE  231 (251)
Q Consensus       194 ~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~  231 (251)
                      +++++||+.+.+||. .++.+++|++|+++| ++++.+
T Consensus       158 ~l~~~al~~a~~rd~-~sg~~i~v~vi~~~g-~~~~~~  193 (201)
T 1iru_K          158 ELLRKCLEELQKRFI-LNLPTFSVRIIDKNG-IHDLDN  193 (201)
T ss_dssp             HHHHHHHHHHHHTBC-BCCCCEEEEEEETTE-EECCCC
T ss_pred             HHHHHHHHHHHhhcc-ccCCceEEEEEcCCC-eEEeec
Confidence            999999999999996 788999999999986 777653

>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H

Probab=100.00  E-value=1.8e-41  Score=289.13  Aligned_cols=187  Identities=20%  Similarity=0.247  Sum_probs=174.7

Q ss_pred             CcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918          38 SATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI  114 (251)
Q Consensus        38 ~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la  114 (251)
                      +|+|||+++||||||+|+|.++++.   ++.+||++|++|++|++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus         1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la   80 (234)
T 1iru_I            1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN   80 (234)
T ss_dssp             CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred             CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence            6899999999999999999999874   5789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHHH
Q psy1918         115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVK  194 (251)
Q Consensus       115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~  194 (251)
                      +++++.++.|     .+||++++||||||++||+||.+||+|++.+++++|+|+|++.++++|++.|+  ++|+++||++
T Consensus        81 ~~l~~~l~~~-----~~~~~v~llvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~--~~ms~eeA~~  153 (234)
T 1iru_I           81 RMLKQMLFRY-----RGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFR--PDMEEEEAKN  153 (234)
T ss_dssp             HHHHHHHHHT-----TTCSCEEEEEEEECSSCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCC--TTCCHHHHHT
T ss_pred             HHHHHHHHhc-----CCCCceeEEEEEEcCCCCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhcc--CCCCHHHHHH
Confidence            9999988554     25999999999999999999999999999999999999999999999999998  6999999999


Q ss_pred             HHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHH
Q psy1918         195 HGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERE  233 (251)
Q Consensus       195 ~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~e  233 (251)
                      ++++||+.++.+|. .++++++|++|+++| ++++.+.+
T Consensus       154 la~~al~~a~~~d~-~sg~~i~v~vi~k~g-~~~~~~~~  190 (234)
T 1iru_I          154 LVSEAIAAGIFNDL-GSGSNIDLCVISKNK-LDFLRPYT  190 (234)
T ss_dssp             HHHHHHHHHHHHCT-TCCSCEEEEEEETTE-EECCSEEE
T ss_pred             HHHHHHHHHHHhcc-cCCCCEEEEEEECCc-EEEEccee
Confidence            99999999999995 688999999999986 88776543

>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A

Probab=100.00  E-value=8.3e-35  Score=238.51  Aligned_cols=167  Identities=14%  Similarity=0.073  Sum_probs=146.3

Q ss_pred             hcCCcEEEeeeCCeEEEEEeccCccc-c-c--cccCceEEE-cCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q psy1918          35 KQGSATVGLKNKTHAVIIALKRAASE-L-A--AHQKKIIVI-DDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLP  109 (251)
Q Consensus        35 ~~G~tvigi~~~dgVvla~d~~~~~~-l-~--~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~  109 (251)
                      .+|+|+|||+++||||||+|++.+++ + .  ++.+||++| ++|++|+++|..+|++.+.++++.+++.|+   +   +
T Consensus         3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g---~   76 (180)
T 2z3b_A            3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G---N   76 (180)
T ss_dssp             BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T---C
T ss_pred             CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C---C
Confidence            57999999999999999999999985 4 4  578999999 999999999999999999999999999987   3   2


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeee--eeEEEEcCChHHHHHHHHHhhcCCC--
Q psy1918         110 VFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYD--VKAMAIGSRSQSARTYLEKRLADFP--  185 (251)
Q Consensus       110 ~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~--~~~~a~G~g~~~a~~~L~~~~~~~~--  185 (251)
                      +   .+.++++.+.++++...|||++++|||    +||+||.+||.|++.+  +++.|+|+|++.|+++||+.|+  +  
T Consensus        77 ~---~~~~~~l~~~~~~~~~~rp~~~~~lva----d~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~--~~~  147 (180)
T 2z3b_A           77 L---KRAAVELAKEWRSDKVLRKLEAMLIVM----NQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKK--HAG  147 (180)
T ss_dssp             H---HHHHHHHHHHHHHCTTGGGCCCCEEEE----CSSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHH--HHG
T ss_pred             h---HHHHHHHHHHHHhhhCcCcceEEEEEE----cCCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhh--ccC
Confidence            2   222233344456677789999999999    4799999999999997  5999999999999999999998  5  


Q ss_pred             -CCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEE
Q psy1918         186 -EASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLV  220 (251)
Q Consensus       186 -~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii  220 (251)
                       +|+.||+   +++||+.+.+||. .++++++|.+|
T Consensus       148 ~~mt~eel---~~~al~~a~~rd~-~sg~~i~v~~i  179 (180)
T 2z3b_A          148 ESMSASEI---ARAALETAGEICV-YTNDQIILEEL  179 (180)
T ss_dssp             GGCCHHHH---HHHHHHHHHHHCT-TCCSCCEEEEE
T ss_pred             CCCCHHHH---HHHHHHHHHHhcC-ccCCeEEEEEE
Confidence             8999994   6799999999996 89999999988

>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4

Probab=100.00  E-value=7.7e-34  Score=230.84  Aligned_cols=165  Identities=18%  Similarity=0.105  Sum_probs=142.6

Q ss_pred             CcEEEeeeCCeEEEEEeccCccc-cc--cccCceEEE-cCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHH
Q psy1918          38 SATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVI-DDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRL  113 (251)
Q Consensus        38 ~tvigi~~~dgVvla~d~~~~~~-l~--~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~l  113 (251)
                      +|+|||+++||||||+|+|.+++ +.  ++.+||++| ++|++|+++|..+|++.+.++++.+++.|+.+     .++.+
T Consensus         1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~   75 (171)
T 1m4y_A            1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAA   75 (171)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHH
T ss_pred             CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHH
Confidence            68999999999999999999986 32  578999999 99999999999999999999999999998754     24555


Q ss_pred             HHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeee--EEEEcCChHHHHHHHHHhhcCCCCCCHHH
Q psy1918         114 ISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVK--AMAIGSRSQSARTYLEKRLADFPEASLEE  191 (251)
Q Consensus       114 a~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~--~~a~G~g~~~a~~~L~~~~~~~~~~s~~e  191 (251)
                      +++.+    .+.++.+.|||+++++++  |  ||+||.+||.|++.+++  +.|+|+|++.++++||+.|+. ++|+.  
T Consensus        76 ~~l~~----~~~~~~~~~~~~~~~lv~--D--~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~-~~ms~--  144 (171)
T 1m4y_A           76 VELAK----DWRTDRVLRRLEALLLVA--D--KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRN-TDLSA--  144 (171)
T ss_dssp             HHHHH----HHHHCTTGGGCCCEEEEE--C--SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHH-CCCCH--
T ss_pred             HHHHH----HHHHhCCCCceEEEEEEE--c--CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhccc-CCCCH--
Confidence            55432    344455668999999998  5  89999999999999988  999999999999999999983 48996  


Q ss_pred             HHHHHHHHHHhhCCCCCCCCCCeEEEEEE
Q psy1918         192 IVKHGLRALRDTLPNDSELTTKNVSIGLV  220 (251)
Q Consensus       192 a~~~~~~al~~~~~~d~~~~~~~iei~ii  220 (251)
                       ++++++||+.+.+||. .++++++|.++
T Consensus       145 -~~l~~~al~~a~~rd~-~sg~~i~v~~~  171 (171)
T 1m4y_A          145 -REIVEKAMTIAGEICI-YTNQNIVIEEV  171 (171)
T ss_dssp             -HHHHHHHHHHHHHHCT-TCCSCCEEEEC
T ss_pred             -HHHHHHHHHHHHHhCc-ccCCeEEEEEC
Confidence             6689999999999996 78999999864

>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A

Probab=100.00  E-value=1e-33  Score=230.75  Aligned_cols=166  Identities=15%  Similarity=0.089  Sum_probs=143.7

Q ss_pred             CcEEEeeeCCeEEEEEeccCccc-cc--cccCceEEE-cCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHH
Q psy1918          38 SATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVI-DDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRL  113 (251)
Q Consensus        38 ~tvigi~~~dgVvla~d~~~~~~-l~--~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~l  113 (251)
                      +|+|||+++||||||+|++.+++ +.  ++.+||++| ++|++++++|..+|++.+.++++.+++.|++      ++...
T Consensus         1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~~~~   74 (174)
T 1g3k_A            1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HLLKS   74 (174)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CHHHH
T ss_pred             CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cHHHH
Confidence            68999999999999999999987 32  578999999 9999999999999999999999999999975      34444


Q ss_pred             HHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeee---EEEEcCChHHHHHHHHHhhcCCCCCCHH
Q psy1918         114 ISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVK---AMAIGSRSQSARTYLEKRLADFPEASLE  190 (251)
Q Consensus       114 a~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~---~~a~G~g~~~a~~~L~~~~~~~~~~s~~  190 (251)
                      +..|++.   ++++.+.||+  +++++|+|  ||+||.+||+|++.+++   +.|+|+|++.++++||+.|+. ++|+.+
T Consensus        75 ~~~l~~~---~~~~~~~r~~--~~~l~g~d--~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~-~~mt~~  146 (174)
T 1g3k_A           75 AVELAKD---WRTDRALRKL--EAMLIVAD--EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVEN-TELSAH  146 (174)
T ss_dssp             HHHHHHH---HHHSTTGGGC--CCEEEEEC--SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHH-CCCCHH
T ss_pred             HHHHHHH---HHhccCcCcc--eEEEEEEC--CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhccc-CCCCHH
Confidence            4455544   4555566775  57788887  79999999999999988   999999999999999999984 489955


Q ss_pred             HHHHHHHHHHHhhCCCCCCCCCCeEEEEEEe
Q psy1918         191 EIVKHGLRALRDTLPNDSELTTKNVSIGLVG  221 (251)
Q Consensus       191 ea~~~~~~al~~~~~~d~~~~~~~iei~ii~  221 (251)
                         +++++||+.+.+||. .++++++|++|+
T Consensus       147 ---~l~~~al~~a~~rd~-~sg~~i~v~~i~  173 (174)
T 1g3k_A          147 ---EIVEKSLRIAGDICV-FTNTNFTIEELP  173 (174)
T ss_dssp             ---HHHHHHHHHHHHHCT-TCCSCCEEEEEC
T ss_pred             ---HHHHHHHHHHHHhcc-ccCCceEEEEec
Confidence               788999999999996 789999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	251
d1iruf_	238	d.153.1.4 (F:) Proteasome alpha subunit (non-catal	5e-83
d1rypf_	233	d.153.1.4 (F:) Proteasome alpha subunit (non-catal	3e-78
d1irud_	243	d.153.1.4 (D:) Proteasome alpha subunit (non-catal	4e-70
d1irua_	244	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	8e-70
d1rypd_	241	d.153.1.4 (D:) Proteasome alpha subunit (non-catal	2e-67
d1irue_	234	d.153.1.4 (E:) Proteasome alpha subunit (non-catal	4e-67
d1rypg_	244	d.153.1.4 (G:) Proteasome alpha subunit (non-catal	1e-66
d1iruc_	250	d.153.1.4 (C:) Proteasome alpha subunit (non-catal	3e-65
d1j2pa_	243	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	2e-64
d1irug_	245	d.153.1.4 (G:) Proteasome alpha subunit (non-catal	5e-64
d1rype_	242	d.153.1.4 (E:) Proteasome alpha subunit (non-catal	1e-63
d1rypc_	244	d.153.1.4 (C:) Proteasome alpha subunit (non-catal	3e-63
d1rypb_	250	d.153.1.4 (B:) Proteasome alpha subunit (non-catal	4e-63
d1yara1	221	d.153.1.4 (A:13-233) Proteasome alpha subunit (non	3e-62
d1rypa_	243	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	4e-62
d1irub_	233	d.153.1.4 (B:) Proteasome alpha subunit (non-catal	2e-61
d1q5qa_	227	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	2e-48
d1ryp2_	233	d.153.1.4 (2:) Proteasome beta subunit (catalytic)	8e-32
d1ryp1_	222	d.153.1.4 (1:) Proteasome beta subunit (catalytic)	2e-31
d1iru2_	217	d.153.1.4 (2:) Proteasome beta subunit (catalytic)	1e-28
d1j2qh_	202	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	1e-27
d1rypi_	222	d.153.1.4 (I:) Proteasome beta subunit (catalytic)	2e-27
d1yarh1	203	d.153.1.4 (H:1-203) Proteasome beta subunit (catal	3e-27
d1irul_	201	d.153.1.4 (L:) Proteasome beta subunit (catalytic)	2e-26
d1rypk_	198	d.153.1.4 (K:) Proteasome beta subunit (catalytic)	2e-26
d1iruj_	204	d.153.1.4 (J:) Proteasome beta subunit (catalytic)	5e-24
d1irui_	220	d.153.1.4 (I:) Proteasome beta subunit (catalytic)	1e-23
d1rypl_	212	d.153.1.4 (L:) Proteasome beta subunit (catalytic)	6e-23
d1rypj_	204	d.153.1.4 (J:) Proteasome beta subunit (catalytic)	1e-22
d1ryph_	205	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	5e-22
d1iruh_	202	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	3e-21
d1iruk_	199	d.153.1.4 (K:) Proteasome beta subunit (catalytic)	4e-21
d1iru1_	213	d.153.1.4 (1:) Proteasome beta subunit (catalytic)	4e-21
d1q5qh_	224	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	3e-20
d1m4ya_	171	d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga ma	9e-09

>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 238

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  246 bits (628), Expect = 5e-83
 Identities = 155/238 (65%), Positives = 201/238 (84%)

Query: 9   NQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKI 68
           NQYD+DVTVWSPQGR+HQ+EYAMEAVKQGSATVGLK+KTHAV++ALKRA SELAAHQKKI
Sbjct: 1   NQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKI 60

Query: 69  IVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY 128
           + +D+H+G+S AGLTADAR+L  FMR ECL+ ++     LPV RL+S++G+K Q+ TQRY
Sbjct: 61  LHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRY 120

Query: 129 DKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEAS 188
            +RPYGVGLL+AGYDD GPHI+QTCPS+NY+D +AM+IG+RSQSARTYLE+ +++F E +
Sbjct: 121 GRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECN 180

Query: 189 LEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEER 246
           L E+VKHGLRALR+TLP + +LTTKNVSIG+VG++ +F   D+ +   +L  +E   +
Sbjct: 181 LNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERPQ 238

>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  234 bits (597), Expect = 3e-78
 Identities = 110/234 (47%), Positives = 153/234 (65%), Gaps = 3/234 (1%)

Query: 7   FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK 66
           FRN YD D   +SP GRL QVEYA+EA+KQGS TVGL++ THAV++ALKR A EL+++QK
Sbjct: 1   FRNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELSSYQK 60

Query: 67  KIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ 126
           KII  D+HMGLS AGL  DAR+L+ ++R +C          L V R   ++ +K Q  TQ
Sbjct: 61  KIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQ 120

Query: 127 RYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADF-- 184
            Y  RPYGVGLL+ GYD +G H+ +  PS N  ++   AIG+RSQ A+TYLE+ L  F  
Sbjct: 121 SYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIK 180

Query: 185 PEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYL 238
            + + +E++K G+ A+  +L ++S LT  N+SI +VG++  F   D      Y+
Sbjct: 181 IDGNPDELIKAGVEAISQSLRDES-LTVDNLSIAIVGKDTPFTIYDGEAVAKYI 233

>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 243

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  213 bits (543), Expect = 4e-70
 Identities = 83/239 (34%), Positives = 139/239 (58%), Gaps = 7/239 (2%)

Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ--KKI 68
           YD  +TV+SP G L QVEYA EAVK+GS  VG++ +   V+   K++ ++L   +  +KI
Sbjct: 2   YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKI 61

Query: 69  IVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY 128
             +DD++ ++FAGLTADARI+    R+EC +++   +D + V  +   + +  Q  TQ  
Sbjct: 62  CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 121

Query: 129 DKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEA 187
            +RP+G+  L+ G+D    P +YQT PS  Y+  KA AIG  ++S R +LEK   D    
Sbjct: 122 GRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIE 181

Query: 188 SLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEER 246
           + +  +K  ++AL + +    +   KN+ + ++ ++Q  K L+  E   Y++ IE E+ 
Sbjct: 182 TDDLTIKLVIKALLEVV----QSGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKEKE 236

>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 244

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  212 bits (542), Expect = 8e-70
 Identities = 75/241 (31%), Positives = 128/241 (53%), Gaps = 9/241 (3%)

Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSAT-VGLKNKTHAVIIALKRAASEL--AAHQKK 67
           +D  +T++SP+GRL+QVEYA +A+ QG  T V ++ K  AVI+  K+   +L  ++    
Sbjct: 8   FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH 67

Query: 68  IIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQR 127
           +  I +++G    G+TAD+R   +  R E  N+KY +   +PV  L   + +  QV TQ 
Sbjct: 68  LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQN 127

Query: 128 YDKRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 186
            + RP G  +++ G D + GP +Y+  P+  Y   KA A G +   + ++LEK++    +
Sbjct: 128 AEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFD 187

Query: 187 ASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVG-QNQKFKTLDERETGHYLSLIEGEE 245
            + E+ V+  +  L   L  D       + +G+V  +N KF+ L E E   +L  +   E
Sbjct: 188 WTFEQTVETAITCLSTVLSID--FKPSEIEVGVVTVENPKFRILTEAEIDAHLVAL--AE 243

Query: 246 R 246
           R
Sbjct: 244 R 244

>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 241

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  206 bits (525), Expect = 2e-67
 Identities = 86/242 (35%), Positives = 131/242 (54%), Gaps = 10/242 (4%)

Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK---K 67
           YD  ++++SP G + QVEYA+EAVK+G+  VG+K K   V+   +R+  +L   +    K
Sbjct: 2   YDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSK 61

Query: 68  IIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQR 127
           +  ID H+ LSF+GL AD+RIL    R+E  +++   +D + V  L   V    Q  TQ 
Sbjct: 62  VSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQS 121

Query: 128 YDKRPYGVGLLVAGYDD--AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRL-ADF 184
              RP+GV  L+AG+D     P +YQT PS  Y    A  IG  S++ R +LEK      
Sbjct: 122 GGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKE 181

Query: 185 PEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGE 244
           P A++EE VK  +R+L + +    +   KN+ I +V  +     L   E   Y++ IE E
Sbjct: 182 PPATVEECVKLTVRSLLEVV----QTGAKNIEITVVKPDSDIVALSSEEINQYVTQIEQE 237

Query: 245 ER 246
           ++
Sbjct: 238 KQ 239

>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 234

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  205 bits (523), Expect = 4e-67
 Identities = 73/238 (30%), Positives = 116/238 (48%), Gaps = 11/238 (4%)

Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ--KKI 68
           YD  V  +SP+GRL QVEY +EA+K GS  +G++      +   KR  S L      +KI
Sbjct: 1   YDRGVNTFSPEGRLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKI 60

Query: 69  IVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY 128
           + ID H+G + +GL ADA+ L    R+E  N+ + + +T+ V  +   V N      +  
Sbjct: 61  VEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEED 120

Query: 129 DK-----RPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLAD 183
                  RP+GV LL  G D+ GP ++   PS  +    A AIGS S+ A++ L++    
Sbjct: 121 ADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELY-- 178

Query: 184 FPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLI 241
               +L+E +K  L  L+  +  + +L   N+ +  V   Q F    + E    +  I
Sbjct: 179 HKSMTLKEAIKSSLIILKQVM--EEKLNATNIELATVQPGQNFHMFTKEELEEVIKDI 234

>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  204 bits (521), Expect = 1e-66
 Identities = 74/240 (30%), Positives = 110/240 (45%), Gaps = 7/240 (2%)

Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK--KI 68
           YD   +V+SP GR  QVEYA++AV+ G+ ++G+K     V    K   S+L   QK  KI
Sbjct: 4   YDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKI 63

Query: 69  IVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY 128
            V+D H+G  ++GL  D R L    R E  ++K  +K  +P+      +G  +Q  T   
Sbjct: 64  QVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYN 123

Query: 129 DKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEA- 187
             RP+GV  +  G D  G H+Y   PS +Y+  K  A G   QSA+  LEK +   PE  
Sbjct: 124 SVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGL 183

Query: 188 SLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQ---NQKFKTLDERETGHYLSLIEGE 244
           S  E VK   + +      D++     + I        N   K +        +   + E
Sbjct: 184 SAREAVKQAAKIIYLAH-EDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAIDFAQKE 242

>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 250

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  201 bits (512), Expect = 3e-65
 Identities = 73/244 (29%), Positives = 128/244 (52%), Gaps = 9/244 (3%)

Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASEL---AAHQKK 67
           YDS  T++SP+GRL+QVEYAMEA+      +G+      ++ A +R   +L       +K
Sbjct: 4   YDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEK 63

Query: 68  IIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQR 127
           I  +++ M  S AG+T+DA +L   +R+    Y   +++ +P  +L++ + +  Q  TQ 
Sbjct: 64  IYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQF 123

Query: 128 YDKRPYGVGLLVAGYDDA-GPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 186
             KRP+GV LL  G+D   G  +YQ+ PS NY   KA  IG+ S +A + L++   +  E
Sbjct: 124 GGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKE-GE 182

Query: 187 ASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQ---KFKTLDERETGHYLSLIEG 243
            +L+  +   ++ L  T+    +L+ + V I  + +       + L ++E    +   E 
Sbjct: 183 MTLKSALALAIKVLNKTMDVS-KLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKKHEE 241

Query: 244 EERR 247
           EE +
Sbjct: 242 EEAK 245

>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 243

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score =  199 bits (506), Expect = 2e-64
 Identities = 82/239 (34%), Positives = 127/239 (53%), Gaps = 8/239 (3%)

Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ--KKI 68
           YD  +TV+SP GRL QVEYA EAVK+G+  +G+K K   ++IA KR  S+L      +KI
Sbjct: 5   YDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKI 64

Query: 69  IVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY 128
             ID+H+  + +GL ADAR+L    R+E    +  +   + V  L   + +  Q  TQ  
Sbjct: 65  YKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYG 124

Query: 129 DKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEAS 188
             RP+GV LL+AG ++  P +Y+T PS    + KA AIG    +   + EK      + S
Sbjct: 125 GVRPFGVSLLIAGVNE-VPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEY--RDDLS 181

Query: 189 LEEIVKHGLRALRDTLPNDSELTTKNVSIGLVG-QNQKFKTLDERETGHYLSLIEGEER 246
            ++ +  GL A+  ++  +SEL  +N+ +G V   ++ FK +   E   Y+       R
Sbjct: 182 FDDAMVLGLVAMGLSI--ESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIR 238

>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 245

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  197 bits (503), Expect = 5e-64
 Identities = 64/226 (28%), Positives = 104/226 (46%), Gaps = 8/226 (3%)

Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASEL--AAHQKKI 68
           YD   + +SP GR+ QVEYAM+AV+  S  +G++ K   V    K   S+L      K++
Sbjct: 7   YDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRL 66

Query: 69  IVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY 128
             +D H+G++ AGL ADAR LA   R E  N++      +P+  L   V   +   T   
Sbjct: 67  FNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYS 126

Query: 129 DKRPYGVGLLVAGYDDAG-PHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEA 187
             RP+G   ++  Y       +Y   PS   Y     AIG   Q+A+T +EK      E 
Sbjct: 127 AVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKL--QMKEM 184

Query: 188 SLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVG--QNQKFKTLDE 231
           +  +IVK   + +     ++ +     + +  VG   N + + + +
Sbjct: 185 TCRDIVKEVAKIIYIVH-DEVKDKAFELELSWVGELTNGRHEIVPK 229

>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 242

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  197 bits (501), Expect = 1e-63
 Identities = 75/243 (30%), Positives = 120/243 (49%), Gaps = 13/243 (5%)

Query: 12  DSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAH--QKKII 69
           D  V+ +SP+GRL QVEY++EA+K GS  +G+  K   V+   KRA S L      +KI+
Sbjct: 1   DRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIV 60

Query: 70  VIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ--- 126
            ID H+G + +GLTADAR +    R   + +   + + + V  L   V +      +   
Sbjct: 61  EIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGAS 120

Query: 127 ---RYDKRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLA 182
              R   RP+GV LL+AG+D D G  ++   PS  +Y   A AIGS S+ A+  L     
Sbjct: 121 GEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEW- 179

Query: 183 DFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIE 242
                +L+E     L+ L+  +  + +L   N  +  + +   FK  D  +T   +  ++
Sbjct: 180 -HSSLTLKEAELLVLKILKQVM--EEKLDENNAQLSCITKQDGFKIYDNEKTAELIKELK 236

Query: 243 GEE 245
            +E
Sbjct: 237 EKE 239

>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  196 bits (498), Expect = 3e-63
 Identities = 68/239 (28%), Positives = 120/239 (50%), Gaps = 12/239 (5%)

Query: 9   NQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAA---HQ 65
            +YDS  T++SP+GRL+QVEYA+E++      +G+      V+ A ++  S L       
Sbjct: 3   RRYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTST 62

Query: 66  KKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCT 125
           +K+  ++D + ++ AGLTADA IL    R+   NY   + + +PV  L+  + +  Q  T
Sbjct: 63  EKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYT 122

Query: 126 QRYDKRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADF 184
           Q    RP+GV  + AGYD   G  +Y + PS NY   KA+++G+ + +A+T L+      
Sbjct: 123 QHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMD--YK 180

Query: 185 PEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQK-----FKTLDERETGHYL 238
            +  +++ ++  L+ L  T  + + LT   +    + +         K    +E    L
Sbjct: 181 DDMKVDDAIELALKTLSKTTDSSA-LTYDRLEFATIRKGANDGEVYQKIFKPQEIKDIL 238

>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 250

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  196 bits (498), Expect = 4e-63
 Identities = 77/252 (30%), Positives = 129/252 (51%), Gaps = 23/252 (9%)

Query: 9   NQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ--K 66
           ++Y   +T +SP G+L Q++YA+ AVKQG  ++G+K     VI   K+++S LA  +   
Sbjct: 3   DRYSFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLS 62

Query: 67  KIIVIDDHMGLSFAGLTADARILARFMRMEC-LNYKYAHKDTLPVFRLISIVGNKMQVCT 125
           K+ ++   +G  ++G+  D R+L    R     +YK  + +  P   L+S V   MQ  T
Sbjct: 63  KVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEAT 122

Query: 126 QRYDKRPYGVGLLVAGYDDA-GPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADF 184
           Q    RP+GV LL+AG+D+  G  +YQ  PS +Y+  KA AIG  S +A+T+LEKR    
Sbjct: 123 QSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRW--N 180

Query: 185 PEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQ---------------KFKTL 229
            E  LE+ +   L  L++++  + E     + + ++G                  +F+ L
Sbjct: 181 DELELEDAIHIALLTLKESV--EGEFNGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKL 238

Query: 230 DERETGHYLSLI 241
             +E    L  +
Sbjct: 239 TSQEINDRLEAL 250

>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit (non-catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 221

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score =  192 bits (489), Expect = 3e-62
 Identities = 79/225 (35%), Positives = 119/225 (52%), Gaps = 6/225 (2%)

Query: 16  TVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ--KKIIVIDD 73
           TV+SP GRL QVEYA EAVK+GS  +G+K     ++I+ K+  S L      +KI +IDD
Sbjct: 1   TVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDD 60

Query: 74  HMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPY 133
           ++    +GL ADAR+L  F R+     K  +   + +  L+  V ++MQ  TQ    RPY
Sbjct: 61  YVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPY 120

Query: 134 GVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIV 193
           GV L+ AG D  GP ++   P+    + KA AIGS   +  ++LE+          +E V
Sbjct: 121 GVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREY--KENLPEKEAV 178

Query: 194 KHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYL 238
             G++AL+ +L    EL  K   I  +    K++  D+ E   +L
Sbjct: 179 TLGIKALKSSLEEGEEL--KAPEIASITVGNKYRIYDQEEVKKFL 221

>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 243

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  193 bits (491), Expect = 4e-62
 Identities = 71/244 (29%), Positives = 113/244 (46%), Gaps = 12/244 (4%)

Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSAT-VGLKNKTHAVIIALKRAASELAAH--QKK 67
           YD  +T++SP+GRL+QVEYA +A  Q +   + ++ K   V+I+ K+   +L        
Sbjct: 3   YDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSY 62

Query: 68  IIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQR 127
           I  I   +G+   G   DAR  A   + E   ++Y +   +P   L   + N  Q+ TQR
Sbjct: 63  IFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQR 122

Query: 128 YDKRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRL----- 181
              RP GV L     D + GP IY+T P+  Y   KA A G + Q   T LE        
Sbjct: 123 AYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKI 182

Query: 182 ADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLI 241
               E S E++V+  +  + D L  +   +  ++ +G+  ++ KF TL        L  I
Sbjct: 183 DHINEESWEKVVEFAITHMIDALGTE--FSKNDLEVGVATKD-KFFTLSAENIEERLVAI 239

Query: 242 EGEE 245
             ++
Sbjct: 240 AEQD 243

>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 233

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  190 bits (484), Expect = 2e-61
 Identities = 71/233 (30%), Positives = 125/233 (53%), Gaps = 7/233 (3%)

Query: 11  YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ--KKI 68
           Y   +T +SP G+L Q+EYA+ AV  G+ +VG+K     V+   K+  S L   +   K+
Sbjct: 5   YSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKV 64

Query: 69  IVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRY 128
             I  H+GL ++G+  D R+L    R     Y   +++ +P  +L+  V + MQ  TQ  
Sbjct: 65  EPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSG 124

Query: 129 DKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEAS 188
             RP+GV LL+ G+++  P+++Q+ PS  Y+  KA A+G    + +T+LEKR     +  
Sbjct: 125 GVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKR--YNEDLE 182

Query: 189 LEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLI 241
           LE+ +   +  L+++   + ++T  N+ +G+  +   F+ L   E   YL+ I
Sbjct: 183 LEDAIHTAILTLKESF--EGQMTEDNIEVGICNEA-GFRRLTPTEVKDYLAAI 232

>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Length = 227

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

 Score =  157 bits (399), Expect = 2e-48
 Identities = 31/225 (13%), Positives = 77/225 (34%), Gaps = 18/225 (8%)

Query: 26  QVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTAD 85
           + E A + + +G + V L  +   + +A   + +       K+  + D +G +  G   +
Sbjct: 8   RSELARKGIARGRSVVVLTFRDGVLFVAENPSTA-----LHKVSELYDRLGFAAVGKYNE 62

Query: 86  ARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYD-- 143
              L R   +      Y++       R ++    +          +PY V + VA     
Sbjct: 63  FENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRV 122

Query: 144 --DAGPHIYQTCPSSNYYDVKAMAIG-SRSQSARTYLEKRLADFPEASLEEIVKHGLRAL 200
                P +Y+     +  D +   +    ++   T + +      +  LE  V   + AL
Sbjct: 123 GSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYR--ADLDLEAAVGIAVNAL 180

Query: 201 RDTLPNDS---ELTTKNVSIGLVGQNQ---KFKTLDERETGHYLS 239
           R     +     +   ++ + ++ Q++    F+ +        + 
Sbjct: 181 RQGGAGEGEKRNVDVASLEVAVLDQSRPRRAFRRIAGTALEQLVP 225

>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  114 bits (287), Expect = 8e-32
 Identities = 32/213 (15%), Positives = 78/213 (36%), Gaps = 11/213 (5%)

Query: 31  MEAVKQGSATVGLKNKTHAVIIALKRA-ASELAAHQ--KKIIVIDDHMGLSFAGLTADAR 87
            + +  G++ + +K     +I A        L      +++I + D+  +  +G  +D +
Sbjct: 2   QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQ 61

Query: 88  ILARFMRMECLNYKYAHKDTLPVFRLISIVGNKM---QVCTQRYDKRPYGVGLLVAGYDD 144
            + R ++       Y +        L      +     +  +R    P    ++VAG   
Sbjct: 62  HIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQS 121

Query: 145 AGPH-IYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRL---ADFPEASLEEIVKHGLRAL 200
            G   +         Y    +A G  +  A   L K +   +D P+ +++   +  + A+
Sbjct: 122 NGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAM 181

Query: 201 RDTLPNDSELTTKNVSIGLVGQNQKFKTLDERE 233
           R     D+  +++N S+ ++ +N         +
Sbjct: 182 RVLYYRDA-RSSRNFSLAIIDKNTGLTFKKNLQ 213

>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  113 bits (283), Expect = 2e-31
 Identities = 35/209 (16%), Positives = 72/209 (34%), Gaps = 23/209 (11%)

Query: 34  VKQGSATVGLKNKTHAVIIALKRAASEL---AAHQKKIIVIDDHMGLSFAGLTADARILA 90
              G   +G+  +  AV+    R  ++    + ++ K+    D++ +S  G  AD   L 
Sbjct: 6   GDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALV 65

Query: 91  RFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYD-DAGPHI 149
           +  +     Y + H D        +     +Q         PY V  ++AG D D    +
Sbjct: 66  KRFKNSVKWYHFDHNDKKLSINSAA---RNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAV 122

Query: 150 YQTCPSSNYYDVKAMAIGSRSQSARTYLEKRL---------------ADFPEASLEEIVK 194
           Y   P  +Y   +  A G+ +     +L+ ++                     S+EE++K
Sbjct: 123 YSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIK 182

Query: 195 HGLRALRDTLPNDSELTTKNVSIGLVGQN 223
               +               + I +V ++
Sbjct: 183 LVRDSFTSATERHI-QVGDGLEILIVTKD 210

>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 217

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  105 bits (264), Expect = 1e-28
 Identities = 33/196 (16%), Positives = 72/196 (36%), Gaps = 7/196 (3%)

Query: 32  EAVKQGSATVGLKNKTHAVIIALKRA-ASELAAHQ--KKIIVIDDHMGLSFAGLTADARI 88
             +  G++ +G+K +   VI A        LA  +   +I+ +++   L  +G  AD + 
Sbjct: 3   NPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQY 62

Query: 89  LARFMRMECLNYKYA-HKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGP 147
           L + +    ++ +      +     + S +     + ++R    P    +++ GY D   
Sbjct: 63  LKQVLGQMVIDEELLGDGHSYSPRAIHSWLTR--AMYSRRSKMNPLWNTMVIGGYADGES 120

Query: 148 HIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPND 207
            +         Y+  ++A G  +  A+  L + L   P  S  E      R +R     D
Sbjct: 121 FLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRD 180

Query: 208 SELTTKNVSIGLVGQN 223
           +  +        V + 
Sbjct: 181 A-RSYNRFQTATVTEK 195

>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score =  102 bits (255), Expect = 1e-27
 Identities = 56/207 (27%), Positives = 88/207 (42%), Gaps = 12/207 (5%)

Query: 40  TVGLKNKTHAVIIALKRAASE---LAAHQKKIIVIDDHMGLSFAGLTADARILARFMRME 96
           TVGL  K   V+   KRA       +   KKI  I D M ++ AG   DA+ LAR +++E
Sbjct: 3   TVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIE 62

Query: 97  CLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSS 156
              Y+   +    V  + ++  N +           Y V LL+ G D  G  IY   P  
Sbjct: 63  ANLYEIRRERKPTVRAIATLTSNLLNSYRYFP----YLVQLLIGGIDSEGKSIYSIDPIG 118

Query: 157 NYYDVK-AMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNV 215
              + K  +A GS S +A   LE R    PE  ++E V+  +RA+   +  DS  +   +
Sbjct: 119 GAIEEKDIVATGSGSLTAYGVLEDR--FTPEIGVDEAVELAVRAIYSAMKRDS-ASGDGI 175

Query: 216 SIGLVGQNQKFKTLDERETGHYLSLIE 242
            +  + ++ +F      E    L+   
Sbjct: 176 DVVKITED-EFYQYSPEEVEQILAKFR 201

>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  102 bits (256), Expect = 2e-27
 Identities = 38/198 (19%), Positives = 71/198 (35%), Gaps = 11/198 (5%)

Query: 40  TVGLKNKTHAVIIALKRAASELAAHQK---KIIVIDDHMGLSFAGLTADARILARFMRME 96
            VG+K     VI A  R+        K   K+  I   +  + AG  AD   + + +   
Sbjct: 3   IVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSN 62

Query: 97  CLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSS 156
              +         V   + ++   +               L+VAG D  G H++      
Sbjct: 63  IELHSLYTSREPRVVSALQMLKQHLFKYQGHIGA-----YLIVAGVDPTGSHLFSIHAHG 117

Query: 157 NYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVS 216
           +      +++GS S +A   LE       + + EE +K    A++  + ND   +  NV 
Sbjct: 118 STDVGYYLSLGSGSLAAMAVLESHW--KQDLTKEEAIKLASDAIQAGIWNDL-GSGSNVD 174

Query: 217 IGLVGQNQKFKTLDERET 234
           + ++   +  + L    T
Sbjct: 175 VCVMEIGKDAEYLRNYLT 192

>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 203

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score =  102 bits (254), Expect = 3e-27
 Identities = 45/202 (22%), Positives = 89/202 (44%), Gaps = 11/202 (5%)

Query: 40  TVGLKNKTHAVIIALKRAASE---LAAHQKKIIVIDDHMGLSFAGLTADARILARFMRME 96
           TVG+  K   ++   +R   E   +  + KK+  ID + G++ AGL  DA++L R+M+ E
Sbjct: 3   TVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAE 62

Query: 97  CLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSS 156
              Y+   +  +P+  + +++ N +          PY V LLV G D   PH++    + 
Sbjct: 63  LELYRLQRRVNMPIEAVATLLSNMLNQVKY----MPYMVQLLVGGIDT-APHVFSIDAAG 117

Query: 157 NYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVS 216
              +    + GS S      LE +     + +++E V   +RA+      DS  +   + 
Sbjct: 118 GSVEDIYASTGSGSPFVYGVLESQ--YSEKMTVDEGVDLVIRAISAAKQRDS-ASGGMID 174

Query: 217 IGLVGQNQKFKTLDERETGHYL 238
           + ++ +   +  L   +    +
Sbjct: 175 VAVITRKDGYVQLPTDQIESRI 196

>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 201

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  100 bits (249), Expect = 2e-26
 Identities = 35/197 (17%), Positives = 77/197 (39%), Gaps = 11/197 (5%)

Query: 40  TVGLKNKTHAVIIALKRAASELAAHQK---KIIVIDDHMGLSFAGLTADARILARFMRME 96
           T+  K +   ++ A  RA +      +   K+I I+ ++  + AG  AD     R +  +
Sbjct: 3   TLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQ 62

Query: 97  CLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSS 156
           C  Y+  +K+ + V     ++ N +             +G ++ G+D  GP +Y      
Sbjct: 63  CRIYELRNKERISVAAASKLLANMVYQYKG----MGLSMGTMICGWDKRGPGLYYVDSEG 118

Query: 157 NYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVS 216
           N       ++GS S  A   +++      +  +E+      RA+      D+  +   V+
Sbjct: 119 NRISGATFSVGSGSVYAYGVMDRGY--SYDLEVEQAYDLARRAIYQATYRDA-YSGGAVN 175

Query: 217 IGLVGQNQKFKTLDERE 233
           +  V ++  +  +    
Sbjct: 176 LYHVRED-GWIRVSSDN 191

>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 198

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 99.8 bits (248), Expect = 2e-26
 Identities = 36/199 (18%), Positives = 75/199 (37%), Gaps = 11/199 (5%)

Query: 40  TVGLKNKTHAVIIALKRAAS---ELAAHQKKIIVIDDHMGLSFAGLTADARILARFMRME 96
            +G++ +   ++ + K        L     K   +  H  +SFAG   D    A +++  
Sbjct: 4   ILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQAN 63

Query: 97  CLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA--GPHIYQTCP 154
              Y       L    + S V  + ++      +RPY V +L+ GYD     P +YQ   
Sbjct: 64  IQLYSIREDYELSPQAVSSFV--RQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDY 121

Query: 155 SSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKN 214
                ++   A G       + L+      P+ + EE +      +++       +  K 
Sbjct: 122 LGTKVELPYGAHGYSGFYTFSLLDHH--YRPDMTTEEGLDLLKLCVQELEKRMP-MDFKG 178

Query: 215 VSIGLVGQNQKFKTLDERE 233
           V + +V ++   + +D+ +
Sbjct: 179 VIVKIVDKD-GIRQVDDFQ 196

>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 204

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 93.8 bits (232), Expect = 5e-24
 Identities = 30/203 (14%), Positives = 71/203 (34%), Gaps = 14/203 (6%)

Query: 37  GSATVGLKNKTHAVIIALKRAASEL---AAHQKKIIVIDDHMGLSFAGLTADARILARFM 93
           G A + +K K    I A +R   +        +KI  + D + +  AGL  D + +A+ +
Sbjct: 7   GGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRL 66

Query: 94  RMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGP--HIYQ 151
           +     Y+      +        + + +          PY    ++AG D       I  
Sbjct: 67  KFRLNLYELKEGRQIKP----YTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICS 122

Query: 152 TCPSSNYYDVKAMAIG-SRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSEL 210
                         +  + ++      E      P    + + +   +A+ + +  D+ +
Sbjct: 123 LDLIGCPMVTDDFVVSGTCAEQMYGMCESL--WEPNMDPDHLFETISQAMLNAVDRDA-V 179

Query: 211 TTKNVSIGLVGQNQ-KFKTLDER 232
           +   V + ++ +++   +TL  R
Sbjct: 180 SGMGVIVHIIEKDKITTRTLKAR 202

>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 220

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 92.5 bits (229), Expect = 1e-23
 Identities = 37/187 (19%), Positives = 69/187 (36%), Gaps = 11/187 (5%)

Query: 40  TVGLKNKTHAVIIALKRAASELAAHQK---KIIVIDDHMGLSFAGLTADARILARFMRME 96
             G+  K   V+ A  RA   +    K   KI  I  ++    AG  AD  +  + +   
Sbjct: 3   IAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSN 62

Query: 97  CLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSS 156
              +  +      V     ++   +        +   G  L++ G D  GPH+Y   P  
Sbjct: 63  LELHSLSTGRLPRVVTANRMLKQMLFRY-----RGYIGAALVLGGVDVTGPHLYSIYPHG 117

Query: 157 NYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVS 216
           +   +  + +GS S +A    E +    P+   EE       A+   + ND   +  N+ 
Sbjct: 118 STDKLPYVTMGSGSLAAMAVFEDKF--RPDMEEEEAKNLVSEAIAAGIFNDL-GSGSNID 174

Query: 217 IGLVGQN 223
           + ++ +N
Sbjct: 175 LCVISKN 181

>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 91.0 bits (225), Expect = 6e-23
 Identities = 36/210 (17%), Positives = 81/210 (38%), Gaps = 12/210 (5%)

Query: 40  TVGLKNKTHAVIIALKRAASELAAHQK---KIIVIDDHMGLSFAGLTADARILARFMRME 96
           T+  + +   ++    RA +      +   ++I I+  +  + AG  AD +    ++  +
Sbjct: 3   TLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQ 62

Query: 97  CLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGY-DDAGPHIYQTCPS 155
           C  ++   K+ + V     I+ N +     +Y      +G ++ GY    GP IY     
Sbjct: 63  CRLHELREKERISVAAASKILSNLV----YQYKGAGLSMGTMICGYTRKEGPTIYYVDSD 118

Query: 156 SNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNV 215
                     +GS    A   L+       + S+E+ +  G R++      D+  +  +V
Sbjct: 119 GTRLKGDIFCVGSGQTFAYGVLDSNY--KWDLSVEDALYLGKRSILAAAHRDA-YSGGSV 175

Query: 216 SIGLVGQNQKFKTLDERETGHYLSLIEGEE 245
           ++  V ++  +      + G     ++ EE
Sbjct: 176 NLYHVTED-GWIYHGNHDVGELFWKVKEEE 204

>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 204

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 89.9 bits (222), Expect = 1e-22
 Identities = 35/192 (18%), Positives = 59/192 (30%), Gaps = 12/192 (6%)

Query: 37  GSATVGLKNKTHAVIIALKRAASELAAHQK--KIIVIDDHMGLSFAGLTADARILARFMR 94
           G   V +  K    I    R  S+        + I    H+ L   GL  D   L    R
Sbjct: 8   GGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYGHVFLGITGLATDVTTLNEMFR 67

Query: 95  MECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAG--PHIYQT 152
            +   YK   +  +            +          PY VG +VAG +     P I   
Sbjct: 68  YKTNLYKLKEERAIEPETFT----QLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGF 123

Query: 153 CPSSNYYDVKAM-AIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELT 211
                  + K     G+ S       E      P    E++ +   +AL +    D+ L+
Sbjct: 124 DLIGCIDEAKDFIVSGTASDQLFGMCESLY--EPNLEPEDLFETISQALLNAADRDA-LS 180

Query: 212 TKNVSIGLVGQN 223
                + ++ ++
Sbjct: 181 GWGAVVYIIKKD 192

>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 205

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 88.3 bits (218), Expect = 5e-22
 Identities = 32/194 (16%), Positives = 66/194 (34%), Gaps = 13/194 (6%)

Query: 34  VKQGSATVGLKNKTHAVIIALKRAASELAAHQK---KIIVIDDHMGLSFAGLTADARILA 90
           V  G++ + +  K   ++ A  R  +      +   K+  + D +    +G  AD + +A
Sbjct: 6   VSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIA 65

Query: 91  RFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA-GPHI 149
             ++     Y   +          +     +       +K     G++VAGYDD     +
Sbjct: 66  DIVQYHLELYTSQYG------TPSTETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEV 119

Query: 150 YQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSE 209
           Y      + + +     GS S     Y +K        S EE V     +L   +  D  
Sbjct: 120 YTIPLGGSVHKLPYAIAGSGSTFIYGYCDKN--FRENMSKEETVDFIKHSLSQAIKWDG- 176

Query: 210 LTTKNVSIGLVGQN 223
            +   + + ++   
Sbjct: 177 SSGGVIRMVVLTAA 190

>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 85.9 bits (212), Expect = 3e-21
 Identities = 29/204 (14%), Positives = 68/204 (33%), Gaps = 13/204 (6%)

Query: 40  TVGLKNKTHAVIIALKRAAS-ELAAHQ--KKIIVIDDHMGLSFAGLTADARILARFMRME 96
            + ++     V+ A  R  +    A++   K+  I D +    +G  AD + +A  +  +
Sbjct: 3   IMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQ 62

Query: 97  CLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA-GPHIYQTCPS 155
              +     +   V    S+             +     G+++AG+D   G  +Y     
Sbjct: 63  LGFHSIELNEPPLVHTAASLFKEMCY-----RYREDLMAGIIIAGWDPQEGGQVYSVPMG 117

Query: 156 SNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNV 215
                      GS S     Y++         + EE ++    AL   +  D   +   +
Sbjct: 118 GMMVRQSFAIGGSGSSYIYGYVDATY--REGMTKEECLQFTANALALAMERDG-SSGGVI 174

Query: 216 SIGLVGQNQ-KFKTLDERETGHYL 238
            +  + ++  + + L   +   + 
Sbjct: 175 RLAAIAESGVERQVLLGDQIPKFA 198

>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 199

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 85.7 bits (211), Expect = 4e-21
 Identities = 39/205 (19%), Positives = 75/205 (36%), Gaps = 16/205 (7%)

Query: 31  MEAVKQGSATVGLKNKTHAVIIALKRAASELAAH---QKKIIVIDDHMGLSFAGLTADAR 87
           ME +      +G++   + ++ + + AAS +        K+  + + + L   G   D  
Sbjct: 1   MEYL------IGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTV 54

Query: 88  ILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYD-DAG 146
             A +++     YK  +   L      +    +  +      + PY V LL+AGYD   G
Sbjct: 55  QFAEYIQKNVQLYKMRNGYELSPTAAANFT--RRNLADCLRSRTPYHVNLLLAGYDEHEG 112

Query: 147 PHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPN 206
           P +Y     +        A G  +    + L++     P  S E  V+   + L +    
Sbjct: 113 PALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYY--TPTISRERAVELLRKCLEELQKR 170

Query: 207 DSELTTKNVSIGLVGQNQKFKTLDE 231
              L     S+ ++ +N     LD 
Sbjct: 171 FI-LNLPTFSVRIIDKN-GIHDLDN 193

>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 213

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 86.1 bits (212), Expect = 4e-21
 Identities = 28/198 (14%), Positives = 61/198 (30%), Gaps = 16/198 (8%)

Query: 37  GSATVGLKNKTHAVIIALKRAASEL---AAHQKKIIVIDDHMGLSFAGLTADARILARFM 93
           G   + +  +  A++ +  R +           K   + D   +  +G   D   L + +
Sbjct: 9   GGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKII 68

Query: 94  RMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTC 153
                 YK+++   +    +       +          PY V  ++ G D+ G     + 
Sbjct: 69  EARLKMYKHSNNKAMTTGAIA----AMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSF 124

Query: 154 P-SSNYYDVKAMAIGSRSQSARTYLEKR-------LADFPEASLEEIVKHGLRALRDTLP 205
               +Y      A GS S   +  L+ +         +    SL+  ++           
Sbjct: 125 DPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAE 184

Query: 206 NDSELTTKNVSIGLVGQN 223
            D   T   + I +V + 
Sbjct: 185 RDV-YTGDALRICIVTKE 201

>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Length = 224

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

 Score = 83.8 bits (206), Expect = 3e-20
 Identities = 39/224 (17%), Positives = 70/224 (31%), Gaps = 19/224 (8%)

Query: 40  TVGLKNKTHAVIIALKRAASELAAHQK---KIIVIDDHMGLSFAGLTADARILARFMRME 96
            V L  K   ++   +RA        +   K+ V D++     AG    A  L R   +E
Sbjct: 3   IVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVE 62

Query: 97  CLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA------GPHIY 150
             +Y+      L      + + + ++        +   V  L+ GYD           I 
Sbjct: 63  LEHYEKIEGVPLTFDGKANRLASMVR-GNLGAAMQGLAVVPLLVGYDLDADDESRAGRIV 121

Query: 151 QTCPSSNY--YDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRAL-----RDT 203
                           A+GS S  A++ L+K     P++  E  ++  + +L      D+
Sbjct: 122 SYDVVGGRYEERAGYHAVGSGSLFAKSALKKI--YSPDSDEETALRAAIESLYDAADDDS 179

Query: 204 LPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEERR 247
                +LT       +         + E  T      I  E   
Sbjct: 180 ATGGPDLTRGIYPTAVTITQAGAVHVSEETTSELARRIVAERTE 223

>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Thermotoga maritima [TaxId: 2336]

 Score = 51.3 bits (122), Expect = 9e-09
 Identities = 22/163 (13%), Positives = 44/163 (26%), Gaps = 14/163 (8%)

Query: 40  TVGLKNKTHAVIIALKRAASE---LAAHQKKIIVIDDHMGLSFAGLTADARILARFMRME 96
            + ++     V+    +       L  + +K+  + +   L+    +    +        
Sbjct: 3   ILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEA 62

Query: 97  CLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSS 156
            L     +     V        +++             +  L+   D     I       
Sbjct: 63  KLREWGGNLTKAAVELAKDWRTDRV----------LRRLEALLLVADKENIFIISGNGEV 112

Query: 157 NYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRA 199
              D  A AIGS    A     K L    + S  EIV+  +  
Sbjct: 113 IQPDDDAAAIGSGGPYALA-AAKALLRNTDLSAREIVEKAMTI 154

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	251
d1rypf_	233	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1iruf_	238	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1iruc_	250	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1irua_	244	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1irue_	234	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1rypd_	241	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1rypb_	250	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1j2pa_	243	Proteasome alpha subunit (non-catalytic) {Archaeon	100.0
d1rypa_	243	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1irud_	243	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1rypc_	244	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1irug_	245	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1irub_	233	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1yara1	221	Proteasome alpha subunit (non-catalytic) {Archaeon	100.0
d1rypg_	244	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1rype_	242	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1q5qa_	227	Proteasome alpha subunit (non-catalytic) {Rhodococ	100.0
d1yarh1	203	Proteasome beta subunit (catalytic) {Archaeon Ther	100.0
d1irul_	201	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1j2qh_	202	Proteasome beta subunit (catalytic) {Archaeon Arch	100.0
d1rypl_	212	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1rypk_	198	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1ryph_	205	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1ryp2_	233	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1iru2_	217	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1iruh_	202	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1irui_	220	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1rypi_	222	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1q5qh_	224	Proteasome beta subunit (catalytic) {Rhodococcus e	100.0
d1iruj_	204	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1ryp1_	222	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1rypj_	204	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1iruk_	199	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1iru1_	213	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d2z3ba1	180	HslV (ClpQ) protease {Bacillus subtilis [TaxId: 14	99.92
d1m4ya_	171	HslV (ClpQ) protease {Thermotoga maritima [TaxId:	99.9
d1g3ka_	173	HslV (ClpQ) protease {Haemophilus influenzae [TaxI	99.88

>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.3e-65  Score=434.59  Aligned_cols=231  Identities=47%  Similarity=0.775  Sum_probs=222.4

Q ss_pred             ccccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccccccCceEEEcCcEEEEEeCcHHHH
Q psy1918           7 FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTADA   86 (251)
Q Consensus         7 ~~~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~~~~~Ki~~i~~~i~~~~sG~~~D~   86 (251)
                      ||++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++++.++.+|||.|+++++|++||..+|+
T Consensus         1 ~~~~yd~~~t~FspdGrl~QvEyA~kav~~g~t~igi~~~dgvvlaad~~~~~~l~~~~~KI~~I~~~i~~~~sG~~~D~   80 (233)
T d1rypf_           1 FRNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELSSYQKKIIKCDEHMGLSLAGLAPDA   80 (233)
T ss_dssp             CHHHHSSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSEEEEEEECCCSSTTBCCCCCEEEEETTEEEEEEECHHHH
T ss_pred             CCccccCCCceECCCCcChHHHHHHHHHHcCCCEEEEEECCeEEEEEeccccccCCcchheEEEcCCCEEEEEeeccccH
Confidence            79999999999999999999999999999999999999999999999999999988888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEE
Q psy1918          87 RILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAI  166 (251)
Q Consensus        87 ~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~  166 (251)
                      +.+++.++.+++.|++.++++++++.+|+.+++.+|.|+++.++|||++++||+|||++||+||.+||+|++.+++++|+
T Consensus        81 ~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~~~~RP~gv~~il~G~d~~g~~Ly~idp~G~~~~~~~~ai  160 (233)
T d1rypf_          81 RVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAI  160 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECTTSCEEEESEEEE
T ss_pred             HHHHHHHHHHHHhhhhhcCCCCcHHHHHHHHHHHHHHHhcccccCCccceEEEEEEcCCCCEEEEEccccceecccEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHhhcC--CCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHH
Q psy1918         167 GSRSQSARTYLEKRLAD--FPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYL  238 (251)
Q Consensus       167 G~g~~~a~~~L~~~~~~--~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l  238 (251)
                      |+|++.++++|++.|++  .++|+++||++++++||+.++.+|. .++.++||++|+++++|++++++||+++|
T Consensus       161 G~gs~~a~~~Le~~~~~~~~~dms~eeai~l~~~~l~~~~~~d~-~~~~~iev~ii~k~~~~~~l~~~ei~~~i  233 (233)
T d1rypf_         161 GARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSLRDES-LTVDNLSIAIVGKDTPFTIYDGEAVAKYI  233 (233)
T ss_dssp             STTHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTSCCSSC-CCTTTEEEEEEETTEEEEEEEGGGGGGGC
T ss_pred             cCchHHHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHHhccC-CCCCeEEEEEEECCCCeEECCHHHHHhhC
Confidence            99999999999987742  2699999999999999999999885 78999999999999889999999998764

>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.9e-65  Score=433.29  Aligned_cols=237  Identities=65%  Similarity=1.095  Sum_probs=226.2

Q ss_pred             ccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccccccCceEEEcCcEEEEEeCcHHHHHH
Q psy1918           9 NQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTADARI   88 (251)
Q Consensus         9 ~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~~~~~Ki~~i~~~i~~~~sG~~~D~~~   88 (251)
                      ++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++++..+.+||++|+++++|++||+.+|++.
T Consensus         1 ~~yd~~~tiFsp~Grl~QvEYA~kav~~G~t~vgik~~dgVvlaad~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~   80 (238)
T d1iruf_           1 NQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTADARL   80 (238)
T ss_dssp             CTTTSCTTCCCTTSCCHHHHHHHHHHHHSCCEEEEECSSEEEEEEECCCSSTTBCCCCCEEEEETTEEEEEEECHHHHHH
T ss_pred             CCCCCCCeeECCCCcchHHHHHHHHHhcCCCEEEEEeCCEEEEEEecccccCCCCccceEEEeCCceEEEEeccchHHHH
Confidence            57999999999999999999999999999999999999999999999999998888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEEcC
Q psy1918          89 LARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGS  168 (251)
Q Consensus        89 l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~G~  168 (251)
                      +++.++.++..|++.+|++++++.+++.+++..|.|+++.++|||++++||||||++||+||++||+|++.+++++|+|+
T Consensus        81 l~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~y~~~~~~rP~~v~~il~G~D~~gp~Ly~~D~~G~~~~~~~~a~G~  160 (238)
T d1iruf_          81 LCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGA  160 (238)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECSSSCEEEESEEEEST
T ss_pred             HHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHhhccCCCcccceEEEEEEcCCCceEEEEcCCCCEEeeeeEEECC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHHhhhhh
Q psy1918         169 RSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEE  245 (251)
Q Consensus       169 g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~~~~~~  245 (251)
                      +++.++++|+++|++..+++++||+++|++||+.++.+|..+++.+|||++|+++++|++++++||+++|+.+++.+
T Consensus       161 g~~~~~~~Lek~~~~~~~~~~~eav~lai~al~~~~~~~~~~~~~~iev~ii~k~~~~~~l~~~ei~~~l~~i~ek~  237 (238)
T d1iruf_         161 RSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERP  237 (238)
T ss_dssp             THHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTEEEEEECSGGGHHHHTTCCCCC
T ss_pred             CchhhHHHHHhhcccccCCCHHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEeCCCCEEECCHHHHHHHHHHHHhCc
Confidence            99999999999998433569999999999999999877655688899999999987899999999999999998754

>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.5e-64  Score=432.33  Aligned_cols=241  Identities=30%  Similarity=0.494  Sum_probs=228.6

Q ss_pred             cccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHH
Q psy1918           8 RNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTA   84 (251)
Q Consensus         8 ~~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~   84 (251)
                      +.+||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++++.   ++.+|||+|++|++|++||..+
T Consensus         1 ~~~yd~~~t~fsp~Grl~QvEyA~kav~~G~tvvgik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~   80 (250)
T d1iruc_           1 SRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITS   80 (250)
T ss_dssp             CTTTCCCTTCCCTTSCCHHHHHHHHHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHH
T ss_pred             CCccCCCCeeECCCCcchHHHHHHHHHhcCCcEEEEEeCCEEEEEEeCccccCCcccCcccceEEECCCcEEEEeecccc
Confidence            3689999999999999999999999999999999999999999999999998874   4678999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeE
Q psy1918          85 DARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKA  163 (251)
Q Consensus        85 D~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~  163 (251)
                      |++.+++.+|.++..|++.++++++++.+++.+++.+|.|+++.++|||++++||+|||+ +||+||.+||+|++.++++
T Consensus        81 D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~li~G~D~~~gp~Ly~~Dp~G~~~~~~~  160 (250)
T d1iruc_          81 DANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKA  160 (250)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEECSE
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhccCCcceEEEEEEEEcCCCCCEEEEEcccccEeeeeE
Confidence            999999999999999999999999999999999999999999999999999999999997 5799999999999999999


Q ss_pred             EEEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCc---eEEecHHHHHHHHHH
Q psy1918         164 MAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQK---FKTLDERETGHYLSL  240 (251)
Q Consensus       164 ~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~---~~~l~~~ei~~~l~~  240 (251)
                      +|+|+|++.++++|+++|++ ++|+++||++++++||+.++++|. .++++++|++|+++++   ++.++++||+++++.
T Consensus       161 ~a~G~gs~~a~~~Le~~y~~-~~ms~eeai~la~~al~~~~~~d~-~~~~~iei~ii~~~~~~~~~~~l~~~Ei~~~l~~  238 (250)
T d1iruc_         161 TCIGNNSAAAVSMLKQDYKE-GEMTLKSALALAIKVLNKTMDVSK-LSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKK  238 (250)
T ss_dssp             EEESTTTTHHHHHHHHHCCT-TCCCHHHHHHHHHHHHHHSSSCTT-CCSTTCEEEEEECCSSSCEEEECCHHHHHHHHHH
T ss_pred             EEeCcChHHHHHHHHhhccc-CCCCHHHHHHHHHHHHHHHhcccC-CCCCeEEEEEEEcCCCceeEEECCHHHHHHHHHH
Confidence            99999999999999999985 589999999999999999999885 7899999999998864   899999999999999


Q ss_pred             hhhhhhccCC
Q psy1918         241 IEGEERRGGG  250 (251)
Q Consensus       241 ~~~~~~~~~~  250 (251)
                      +++++..+.+
T Consensus       239 ~~e~~~~a~~  248 (250)
T d1iruc_         239 HEEEEAKAER  248 (250)
T ss_dssp             HHTTTTTTSS
T ss_pred             HHHHhhhHhh
Confidence            9988776654

>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.6e-63  Score=423.72  Aligned_cols=235  Identities=30%  Similarity=0.520  Sum_probs=222.3

Q ss_pred             ccccCCCCceeecCCCcchhhchHHHHHhcCC-cEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcH
Q psy1918           7 FRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGS-ATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLT   83 (251)
Q Consensus         7 ~~~~yd~~~t~fsp~G~l~QvEya~~a~~~G~-tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~   83 (251)
                      +.++||+++|+|||||||+|||||++|+++|+ |+|||+++||||||+|++.++++.  ++.+|||+|++|++|++||..
T Consensus         4 ~~~gyd~~~t~Fsp~Grl~QvEYA~kav~~gg~t~igIk~~dgVVlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~   83 (244)
T d1irua_           4 SSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMT   83 (244)
T ss_dssp             CCCTTTTTSSCCCTTSCCHHHHHHHHHHHTTCCEEEEEECSSEEEEEEECCCCCSSBCGGGCCSEEESSSSCEEEEEECH
T ss_pred             CCCCcCCCCceECCCCeEhHHHHHHHHHHhCCccEEEEEcCCEEEEEEecccccccccCCccceEEEecCCcEEEEecch
Confidence            46799999999999999999999999999975 899999999999999999987764  578999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeee
Q psy1918          84 ADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVK  162 (251)
Q Consensus        84 ~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~  162 (251)
                      +|++.+.+.+|.+++.|++.++++++++.+++.+++++|.|+++++.|||++++||+|||+ +||+||.+||+|++.+++
T Consensus        84 ~D~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~D~~~g~~Ly~~Dp~G~~~~~~  163 (244)
T d1irua_          84 ADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFK  163 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCEEEBS
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHhcccccCccceeeEEEEEcCCCCcEEEEEcCCccEEecc
Confidence            9999999999999999999999999999999999999999999999999999999999997 579999999999999999


Q ss_pred             EEEEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCC-ceEEecHHHHHHHHHHh
Q psy1918         163 AMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQ-KFKTLDERETGHYLSLI  241 (251)
Q Consensus       163 ~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~-~~~~l~~~ei~~~l~~~  241 (251)
                      ++|+|+|+..++++||++|++.++|+++||++++++||+.++.+|.  ++.+++|++|++++ +|++|+++||+++|..+
T Consensus       164 ~~a~G~gs~~~~~~Le~~~~~~~d~t~eeai~l~~~~l~~~~~~d~--~~~~iev~ii~~~~~~~~~l~~~ei~~~l~~~  241 (244)
T d1irua_         164 ATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDF--KPSEIEVGVVTVENPKFRILTEAEIDAHLVAL  241 (244)
T ss_dssp             EEEEETTHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHTTCCC--CTTSEEEEEEETTEEEEEECCHHHHHHHHHHH
T ss_pred             eEeccCchhHHHHHHHhccccccCCCHHHHHHHHHHHHHHHHhcCC--CCCcEEEEEEEeCCCcEEECCHHHHHHHHHHH
Confidence            9999999999999999999766899999999999999999999984  55789999999886 59999999999999998


Q ss_pred             hh
Q psy1918         242 EG  243 (251)
Q Consensus       242 ~~  243 (251)
                      ++
T Consensus       242 ~~  243 (244)
T d1irua_         242 AE  243 (244)
T ss_dssp             HT
T ss_pred             hc
Confidence            75

>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.5e-63  Score=420.10  Aligned_cols=227  Identities=32%  Similarity=0.527  Sum_probs=217.1

Q ss_pred             CCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHHHHHH
Q psy1918          11 YDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADARI   88 (251)
Q Consensus        11 yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~   88 (251)
                      ||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++++.  ++.+||++|+++++|++||+.+|++.
T Consensus         1 yd~~~t~fsp~G~l~QvEYa~kav~~G~t~vgik~~dgVvlaad~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~   80 (234)
T d1irue_           1 YDRGVNTFSPEGRLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKT   80 (234)
T ss_dssp             CCCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECCCCCTTBCTTSCCSEEEEETTEEEEEEECHHHHHH
T ss_pred             CCCCCceECCCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEecCccCCCcccCcccCEEEccCcEEEEEeeccchHHH
Confidence            8999999999999999999999999999999999999999999999988874  57789999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCC-----CCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeE
Q psy1918          89 LARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYD-----KRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKA  163 (251)
Q Consensus        89 l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~-----~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~  163 (251)
                      +.+.++.++..|++.++++++++.+++.+++++|.|+++.+     .|||++++|+||||++||+||.+||.|++.++++
T Consensus        81 l~~~~~~~~~~~~~~~~~~i~~~~la~~i~~~~~~~t~~~~~~~~~~rP~~~~~il~G~D~~gp~Ly~idp~G~~~~~~~  160 (234)
T d1irue_          81 LIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDA  160 (234)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEETTEEEEEEECTTSCEEEBSE
T ss_pred             HHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhhcccccccccccceEEEEEEEEcCCCCEEEEEecCcccceeee
Confidence            99999999999999999999999999999999999999876     6999999999999999999999999999999999


Q ss_pred             EEEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHHh
Q psy1918         164 MAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLI  241 (251)
Q Consensus       164 ~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~~  241 (251)
                      +|+|+|++.++++|++.|+  ++|+++||++++++||+.++++|  .++.++||++|+++++|++|+++||++++++|
T Consensus       161 ~a~G~gs~~~~~~Le~~~~--~~~~~eeai~~a~~al~~~~~~~--~~~~~iei~ii~~~~~~k~l~~~ei~~~l~~i  234 (234)
T d1irue_         161 RAIGSASEGAQSSLQELYH--KSMTLKEAIKSSLIILKQVMEEK--LNATNIELATVQPGQNFHMFTKEELEEVIKDI  234 (234)
T ss_dssp             EEESTTHHHHHHHHHHHCC--TTCCHHHHHHHHHHHHHHHCSSC--CCTTSEEEEEECSSSCCEECCHHHHHHHHTTC
T ss_pred             EEeCCchHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHHHHhcc--CCCCCEEEEEEECCCCEEECCHHHHHHHHHhC
Confidence            9999999999999999998  69999999999999999999876  47778999999988789999999999999764

>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.6e-62  Score=416.09  Aligned_cols=234  Identities=37%  Similarity=0.567  Sum_probs=221.9

Q ss_pred             cCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHH
Q psy1918          10 QYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADA   86 (251)
Q Consensus        10 ~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~   86 (251)
                      |||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++++.   .+.+|||+|++|++|++||+.+|+
T Consensus         1 gyd~~~t~fsp~Grl~QvEya~kav~~G~tvIgik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~   80 (241)
T d1rypd_           1 GYDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADS   80 (241)
T ss_dssp             CCCCCCSCCBTTTBCHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHH
T ss_pred             CCCCCCceECCCCcEeHHHHHHHHHHcCCCEEEEEeCCEEEEEEEccccccCcccccccccEEEeCCCEEEEeeeccchH
Confidence            79999999999999999999999999999999999999999999999999875   467899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC--CCCeEEEECCCCCeeeeeEE
Q psy1918          87 RILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD--AGPHIYQTCPSSNYYDVKAM  164 (251)
Q Consensus        87 ~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~--~gp~ly~id~~G~~~~~~~~  164 (251)
                      +.+.+.++.++..|++.++++++++.+++.++..+|.|+++.++|||+|++|+||||+  +||+||.+||+|++.+++++
T Consensus        81 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~i~~~~~~~t~~~~~rP~~v~~li~G~d~~~~~p~Ly~idp~G~~~~~~~~  160 (241)
T d1rypd_          81 RILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQ  160 (241)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEE
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhhccccCcccceEEEEEEccccCcceEEEecCCEEEEeeCeE
Confidence            9999999999999999999999999999999999999999999999999999999995  57999999999999999999


Q ss_pred             EEcCChHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHHhhh
Q psy1918         165 AIGSRSQSARTYLEKRLAD-FPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEG  243 (251)
Q Consensus       165 a~G~g~~~a~~~L~~~~~~-~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~~~~  243 (251)
                      |+|+|++.++++|++.|++ .++|+++|++++|++||+.+..+    ++.+++|+++++++++++|+++||+++|..|++
T Consensus       161 a~G~gs~~~~~~Le~~~~~~~~~~t~~e~i~lal~al~~~~~~----~~~~iei~ii~~d~~~~~l~~~ei~~~l~~i~~  236 (241)
T d1rypd_         161 TIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQT----GAKNIEITVVKPDSDIVALSSEEINQYVTQIEQ  236 (241)
T ss_dssp             EESTTHHHHHHHHHTTCCTTSCCCSHHHHHHHHHHHHHHHHCS----CSTTEEEEEEETTTEEEECCHHHHHHHHHHHTH
T ss_pred             EECcCHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHhcC----CCCcEEEEEEECCCCEEECCHHHHHHHHHHHHH
Confidence            9999999999999999964 36899999999999999999854    456999999999888999999999999999988


Q ss_pred             hhhc
Q psy1918         244 EERR  247 (251)
Q Consensus       244 ~~~~  247 (251)
                      ++..
T Consensus       237 ~~~~  240 (241)
T d1rypd_         237 EKQE  240 (241)
T ss_dssp             HHHC
T ss_pred             HHhc
Confidence            7653

>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.6e-62  Score=418.90  Aligned_cols=231  Identities=33%  Similarity=0.553  Sum_probs=217.9

Q ss_pred             cccccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcH
Q psy1918           6 KFRNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLT   83 (251)
Q Consensus         6 ~~~~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~   83 (251)
                      |+ ++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++++.  ++.+||++|++|++|++||+.
T Consensus         1 m~-~~yd~~~t~fsp~G~l~QvEyA~kav~~G~tvvgi~~~dgVvlaad~r~~~~~~~~~~~~ki~~I~~~i~~~~sG~~   79 (250)
T d1rypb_           1 MT-DRYSFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMG   79 (250)
T ss_dssp             CC-CCCCSBSSCBCTTSCBHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCSSBCGGGCCSSEEEETTEEEEEEECH
T ss_pred             CC-ccccCCCceECCCCeehHHHHHHHHHHcCCCEEEEEeCCEEEEEEecccCCccccccccceeEeccCCEEEEeeecc
Confidence            55 679999999999999999999999999999999999999999999999888764  578999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH-HhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeee
Q psy1918          84 ADARILARFMRMECLN-YKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDV  161 (251)
Q Consensus        84 ~D~~~l~~~l~~~~~~-~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~  161 (251)
                      +|++.+++.++.++.. |+..++++++++.+++.+++.+|.|+++.+.|||++++||+|||+ +||+||++||.|++.++
T Consensus        80 ~D~~~l~~~~~~~~~~~y~~~~~~~~~~~~la~~~~~~~~~~~~~~~~rp~~v~~li~G~D~~~gp~Ly~id~~G~~~~~  159 (250)
T d1rypb_          80 PDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPW  159 (250)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEB
T ss_pred             cHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCcCeeEEEEEEEecCCCCCEEEEEcCcEEEEEe
Confidence            9999999999999874 889999999999999999999999999999999999999999996 67999999999999999


Q ss_pred             eEEEEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCC---------------ce
Q psy1918         162 KAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQ---------------KF  226 (251)
Q Consensus       162 ~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~---------------~~  226 (251)
                      +++|+|+|+..++++|+++|+  |+|+++||++++++||+.+..+|  .++.+++|++|++++               .|
T Consensus       160 ~~~a~G~gs~~a~~~Le~~~~--~~ms~eea~~la~~al~~~~~~d--~s~~~iev~vi~~~~~~~~~~~~v~~~~~~~f  235 (250)
T d1rypb_         160 KATAIGKGSVAAKTFLEKRWN--DELELEDAIHIALLTLKESVEGE--FNGDTIELAIIGDENPDLLGYTGIPTDKGPRF  235 (250)
T ss_dssp             SEEEESTTHHHHHHHHHHHCC--TTCCHHHHHHHHHHHHHHHCCSC--CSTTTEEEEEECSCCGGGTSEESCSSCCCCSE
T ss_pred             eEEecCcchHHHHHHHHHhcc--cCCCHHHHHHHHHHHHHHHhhcc--CCCCCEEEEEEeCCCcccccccccccccCCce
Confidence            999999999999999999999  79999999999999999999988  478899999998764               38


Q ss_pred             EEecHHHHHHHHHHh
Q psy1918         227 KTLDERETGHYLSLI  241 (251)
Q Consensus       227 ~~l~~~ei~~~l~~~  241 (251)
                      ++|+++||+++|+.|
T Consensus       236 r~ls~eei~~~l~~l  250 (250)
T d1rypb_         236 RKLTSQEINDRLEAL  250 (250)
T ss_dssp             EECCHHHHHHHHTTC
T ss_pred             EECCHHHHHHHHHhC
Confidence            999999999999764

>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=5.5e-62  Score=416.12  Aligned_cols=232  Identities=34%  Similarity=0.508  Sum_probs=220.5

Q ss_pred             cccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHHH
Q psy1918           8 RNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTAD   85 (251)
Q Consensus         8 ~~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D   85 (251)
                      ..|||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++++.  ++.+|||+|+++++|++||..+|
T Consensus         2 ~~gyd~~~t~fsp~Grl~QvEya~kav~~G~t~Igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D   81 (243)
T d1j2pa_           2 QMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICAATSGLVAD   81 (243)
T ss_dssp             CTTSSSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCTTBCGGGCCSEEECSSSEEEEEEECHHH
T ss_pred             CCCcCCCCccCCCCCcchHHHHHHHHHHcCCCEEEEEECCEEEEEEecCccccCccccccccEeecCCcEEEEeeecccH
Confidence            4699999999999999999999999999999999999999999999999999874  56799999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEE
Q psy1918          86 ARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMA  165 (251)
Q Consensus        86 ~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a  165 (251)
                      ++.+.+.++.++..|++.++++++++.+++.++..+|.|+++.++|||++++++||+|+ +|+||.+||.|++.+++++|
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~D~-~p~Ly~~Dp~G~~~~~~~~a  160 (243)
T d1j2pa_          82 ARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNE-VPKLYETDPSGALLEYKATA  160 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEESS-SEEEEEECTTCCEEEBSEEE
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHhhhccCCccceeEEEEEecC-CceEEEEeccCceeeeeEEE
Confidence            99999999999999999999999999999999999999999999999999999999985 69999999999999999999


Q ss_pred             EcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCC-ceEEecHHHHHHHHHHhhhh
Q psy1918         166 IGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQ-KFKTLDERETGHYLSLIEGE  244 (251)
Q Consensus       166 ~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~-~~~~l~~~ei~~~l~~~~~~  244 (251)
                      +|+|++.++++|++.|+  ++||++||++++++||+.++++|.  +.+++||+++++++ +|++++++||+.++..++++
T Consensus       161 ~G~g~~~a~~~Le~~y~--~~ms~eeai~la~~~l~~~~~~d~--~~~~iei~iv~~~~~~~~~l~~~ei~~~~~~~~e~  236 (243)
T d1j2pa_         161 IGMGRMAVTEFFEKEYR--DDLSFDDAMVLGLVAMGLSIESEL--VPENIEVGYVKVDDRTFKEVSPEELKPYVERANER  236 (243)
T ss_dssp             ESTTHHHHHHHHHHHCC--TTCCHHHHHHHHHHHHHHHHTSCC--CGGGEEEEEEETTTCCCEECCHHHHHHHHHHHHHH
T ss_pred             eCCCcHHHHHHHHhhcc--cCCCHHHHHHHHHHHHHHHHhccc--CCCceEEEEEEeCCCcEEECCHHHHHHHHHHHHHH
Confidence            99999999999999998  799999999999999999999984  56799999999753 69999999999999988743

>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-61  Score=413.94  Aligned_cols=234  Identities=30%  Similarity=0.476  Sum_probs=220.6

Q ss_pred             ccCCCCceeecCCCcchhhchHHHHHhc-CCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHHH
Q psy1918           9 NQYDSDVTVWSPQGRLHQVEYAMEAVKQ-GSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTAD   85 (251)
Q Consensus         9 ~~yd~~~t~fsp~G~l~QvEya~~a~~~-G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D   85 (251)
                      .|||+++|+|||||||+|||||++|+++ |+|+|||+++||||||+|++.++++.  ++.+||++|++|++|++||+.+|
T Consensus         1 ~gyd~~~t~fsp~Grl~QvEYA~~av~~~g~T~igik~~dgVvlaad~r~~~~l~~~~~~~KI~~i~~~i~~~~sG~~~D   80 (243)
T d1rypa_           1 AGYDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIPD   80 (243)
T ss_dssp             CGGGGTSSSCCTTSCCHHHHHHHHHTTTTCCCEEEEECSSEEEEEEECCCCCTTBCGGGCCSEEECSSSCEEEEESCHHH
T ss_pred             CCCCCCCCeECCCCeehHHHHHHHHHHccCceEEEEEcCCEEEEEEeccccccccccCcccceEecCCCEEEEEecCcHH
Confidence            4899999999999999999999999997 55899999999999999999988774  57889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeEE
Q psy1918          86 ARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAM  164 (251)
Q Consensus        86 ~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~~  164 (251)
                      ++.+.+.++.+++.|++.++.+++++.+++.+++.+|.|+++.+.|||++++||+|||+ +||+||++||+|++.+++++
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~~g~~Ly~~Dp~G~~~~~~~~  160 (243)
T d1rypa_          81 ARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKAT  160 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSEE
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhcccccCccceEEEEEEccCCCCeEEEEcCCEEEEecceE
Confidence            99999999999999999999999999999999999999999999999999999999996 57999999999999999999


Q ss_pred             EEcCChHHHHHHHHHhhcC-----CCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHH
Q psy1918         165 AIGSRSQSARTYLEKRLAD-----FPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLS  239 (251)
Q Consensus       165 a~G~g~~~a~~~L~~~~~~-----~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~  239 (251)
                      |+|+|+..++++|+++|++     .++++++||++++++||+.++.+|  .++++++|++++++| +++|+++||+++|.
T Consensus       161 a~G~gs~~~~~~Le~~~~~~~~~~~~~~s~eeav~la~~~l~~~~~~d--~~~~~iei~iitk~g-~~~l~~eeI~~~l~  237 (243)
T d1rypa_         161 ATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTE--FSKNDLEVGVATKDK-FFTLSAENIEERLV  237 (243)
T ss_dssp             EESTTHHHHHHHHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCC--CCTTSEEEEEEETTE-EEECCHHHHHHHHH
T ss_pred             EeCccHHHHHHHHHHHhhcccccccccccHHHHHHHHHHHHHHHhhcc--CCCCcEEEEEEeCCc-eEEeCHHHHHHHHH
Confidence            9999999999999999963     356799999999999999999998  467899999999985 99999999999999


Q ss_pred             Hhhhhh
Q psy1918         240 LIEGEE  245 (251)
Q Consensus       240 ~~~~~~  245 (251)
                      .++++|
T Consensus       238 ~i~e~~  243 (243)
T d1rypa_         238 AIAEQD  243 (243)
T ss_dssp             HHTTTC
T ss_pred             HHhccC
Confidence            998764

>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.2e-62  Score=415.38  Aligned_cols=236  Identities=35%  Similarity=0.559  Sum_probs=219.3

Q ss_pred             cCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHHHHH
Q psy1918          10 QYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADAR   87 (251)
Q Consensus        10 ~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~~   87 (251)
                      +||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.+..+.  ++.+|||+|+++++|++||+.+|++
T Consensus         1 ~yd~~~t~Fsp~Grl~QvEya~kav~~G~Tvvgik~~dgVvla~d~r~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~   80 (243)
T d1irud_           1 SYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADAR   80 (243)
T ss_dssp             CCCCCCSCCCTTSCCHHHHHHHHHHHTSCCEEEECCSSEEEEEECCCCCCSSSCGGGGCSEEESSSSCEEEEEECHHHHH
T ss_pred             CCCCCCeeECCCCcchHHHHHHHHHhcCCCEEEEEeCCEEEEEEeccccCcccCCCccccEEECCCCEEEEEEEchhhHH
Confidence            59999999999999999999999999999999999999999999999876664  5789999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeEEEE
Q psy1918          88 ILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAI  166 (251)
Q Consensus        88 ~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~~a~  166 (251)
                      .+++.++.++..|++.++.+++++.+++++++++|.|++++++|||++++||+|||+ +||+||.+||+|++.+++++|+
T Consensus        81 ~l~~~~~~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~~~rp~~v~~li~G~D~~~~p~Ly~idp~G~~~~~~~~a~  160 (243)
T d1irud_          81 IVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAI  160 (243)
T ss_dssp             HHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEEEE
T ss_pred             HHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhcccCCccceEEEEEEEcCCCCCEEEEecCcEEEEeccEEEE
Confidence            999999999999999999999999999999999999999999999999999999986 4799999999999999999999


Q ss_pred             cCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHHhhhhhh
Q psy1918         167 GSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEER  246 (251)
Q Consensus       167 G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~~~~~~~  246 (251)
                      |+|++.++++|+++|++...++.++++++++++|+....    .++.+++|++|+++++|++++++||++++..++++++
T Consensus       161 G~gs~~a~~~Lek~~~~~~~~~~~~~i~~ai~~l~~~~~----~~~~~vei~ii~k~~~~~~l~~~eI~~~l~~i~~~~~  236 (243)
T d1irud_         161 GRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQ----SGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKEKE  236 (243)
T ss_dssp             STTHHHHHHHHTTTCCSSTTCSHHHHHHHHHHHHHTTSC----TTSTTCCEEEEESSSCEECCCHHHHHHHTTTTTTTTT
T ss_pred             CCChHHHHHHHHHhcccCCCccHHHHHHHHHHHHHHHhc----CCCCcEEEEEEECCCCEEECCHHHHHHHHHHHHhhhh
Confidence            999999999999999942233778899999999998764    3566899999999877999999999999999998776


Q ss_pred             ccC
Q psy1918         247 RGG  249 (251)
Q Consensus       247 ~~~  249 (251)
                      .+.
T Consensus       237 ~~~  239 (243)
T d1irud_         237 ENE  239 (243)
T ss_dssp             TTT
T ss_pred             hhh
Confidence            653

>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.6e-61  Score=411.30  Aligned_cols=231  Identities=30%  Similarity=0.508  Sum_probs=220.2

Q ss_pred             cccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHH
Q psy1918           8 RNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTA   84 (251)
Q Consensus         8 ~~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~   84 (251)
                      .++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++++.   ++.+||++|++++++++||..+
T Consensus         2 ~~~yd~~~t~fsp~G~~~Qveya~~ai~~G~T~vgi~~~dgVvlaad~r~s~~~~~~~~~~~KI~~i~~~i~~~~sG~~~   81 (244)
T d1rypc_           2 SRRYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTA   81 (244)
T ss_dssp             CGGGCCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHH
T ss_pred             CCccCCCceeECCCCcChHHHHHHHHHhcCCCEEEEEeCCEEEEEEeCCccCCCcccCCccceEEEcCCCeEEEEecccC
Confidence            3579999999999999999999999999999999999999999999999999864   4689999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeE
Q psy1918          85 DARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKA  163 (251)
Q Consensus        85 D~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~  163 (251)
                      |++.+.+.++.+++.|++.++++++++.+++.+++.++.|+++.++|||++++||+|||+ +||+||.+||.|++.++++
T Consensus        82 D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~rP~~~~~ll~G~d~~~gp~Ly~id~~Gs~~~~~~  161 (244)
T d1rypc_          82 DAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKA  161 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSE
T ss_pred             cHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhhhccccCccceeEEEEEEecCCCceEEEecCCCcEeeeee
Confidence            999999999999999999999999999999999999999999999999999999999996 5799999999999999999


Q ss_pred             EEEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCc-----eEEecHHHHHHHH
Q psy1918         164 MAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQK-----FKTLDERETGHYL  238 (251)
Q Consensus       164 ~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~-----~~~l~~~ei~~~l  238 (251)
                      +|+|+|+..++++|++.|+  ++|+++||++++++||+.++++|. .+++++||++|++++.     ++.++++||+++|
T Consensus       162 ~a~G~g~~~a~~~Le~~~~--~~ms~eeai~l~~~al~~a~~~d~-~~~~~iei~ii~~~~~~~~~~~~~~~~~Ei~~~l  238 (244)
T d1rypc_         162 ISVGANTSAAQTLLQMDYK--DDMKVDDAIELALKTLSKTTDSSA-LTYDRLEFATIRKGANDGEVYQKIFKPQEIKDIL  238 (244)
T ss_dssp             EEESTTHHHHHHHHHHHCC--TTCCHHHHHHHHHHHHHHHCSSSS-CCGGGEEEEEEECCSSSSSCEEEECCHHHHHHHH
T ss_pred             eeccchhHHHHHHHHhccc--CCCCHHHHHHHHHHHHHHHHhccC-CCCCcEEEEEEECCCcccceeEEECCHHHHHHHH
Confidence            9999999999999999998  699999999999999999999996 7888999999998763     7889999999998


Q ss_pred             HHh
Q psy1918         239 SLI  241 (251)
Q Consensus       239 ~~~  241 (251)
                      .+.
T Consensus       239 ~k~  241 (244)
T d1rypc_         239 VKT  241 (244)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            764

>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.4e-61  Score=413.89  Aligned_cols=234  Identities=28%  Similarity=0.390  Sum_probs=218.2

Q ss_pred             cccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHHH
Q psy1918           8 RNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTAD   85 (251)
Q Consensus         8 ~~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D   85 (251)
                      -++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++++.  ++.+|||+|++|++|++||..+|
T Consensus         4 ~~~yd~~~t~Fsp~Grl~QvEYa~~av~~G~t~VGik~~dgVvlaad~~~~~~~~~~~~~~Ki~~I~~~i~~~~sG~~~D   83 (245)
T d1irug_           4 GTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLAD   83 (245)
T ss_dssp             CSSTTSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSBEEEEEEEECSCTTBCTTTTCCEEEEETTEEEEEEECHHH
T ss_pred             ccccCCCCceECCCCeehHHHHHHHHHHcCCcEEEEEeCCEEEEEEeccccccccccCccceEEEcCCCEEEEeccCchh
Confidence            3699999999999999999999999999999999999999999999999888874  57799999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeEE
Q psy1918          86 ARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAM  164 (251)
Q Consensus        86 ~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~~  164 (251)
                      ++.+++.++.++..|++.+|++++++.+++.+++.+|.|++++++|||+|++||+|||+ +||+||.+||+|++.+++++
T Consensus        84 ~~~l~~~~~~~~~~~~~~~g~~i~~~~la~~la~~~~~~t~~~~~rP~~vs~li~G~D~~~gp~Ly~iDp~G~~~~~~~~  163 (245)
T d1irug_          84 ARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGC  163 (245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEBSEE
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhccccccccceEEEEEEEcCCCCceEEEEcCCceEEeeeEE
Confidence            99999999999999999999999999999999999999999999999999999999995 57999999999999999999


Q ss_pred             EEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecC-CceEEecHHHHHHHHHHhhh
Q psy1918         165 AIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQN-QKFKTLDERETGHYLSLIEG  243 (251)
Q Consensus       165 a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~-~~~~~l~~~ei~~~l~~~~~  243 (251)
                      |+|++++.++++|++.|+  ++||.+||++++++||+.+++++. ..+.++||++|+++ +.++++.+.|+.+.+.+..+
T Consensus       164 a~G~gs~~a~~~Le~~~~--~dmt~eea~~l~~~~l~~~~~~~~-~~~~~iei~~v~~~~~~~~~~~~~e~~~~~~~~~~  240 (245)
T d1irug_         164 AIGKARQAAKTEIEKLQM--KEMTCRDIVKEVAKIIYIVHDEVK-DKAFELELSWVGELTNGRHEIVPKDIREEAEKYAK  240 (245)
T ss_dssp             EESTTHHHHHHHHTTSCG--GGCCHHHHHHHHHHHHHHHSCSSS-SCCEEEEEEECBTTTTTCCEECCHHHHHHHHHHHH
T ss_pred             EECCccHHHHHHHHhhcC--CCCCHHHHHHHHHHHHHHHHhhcc-CCCceEEEEEEEecCCCeEEEChHHHHHHHHHHHH
Confidence            999999999999999999  699999999999999999997764 67778999999875 34777778888877777665


Q ss_pred             h
Q psy1918         244 E  244 (251)
Q Consensus       244 ~  244 (251)
                      +
T Consensus       241 ~  241 (245)
T d1irug_         241 E  241 (245)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.8e-61  Score=408.12  Aligned_cols=229  Identities=31%  Similarity=0.562  Sum_probs=220.0

Q ss_pred             cccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHHH
Q psy1918           8 RNQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTAD   85 (251)
Q Consensus         8 ~~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D   85 (251)
                      ..|||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++++.  ++.+|||+|+++++|+++|..+|
T Consensus         2 ~~gyd~~~t~fsp~Gr~~Qveya~kav~~G~tvigik~~dgVvlaaD~r~~~~~~~~~~~~ki~~i~~~i~~~~sG~~~D   81 (233)
T d1irub_           2 ERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPD   81 (233)
T ss_dssp             CCCCCSBSCCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSCEEEEEECCCCCSSBCSTTCCSSEESSSSEEEEEEECHHH
T ss_pred             CCCcCCCCCeECCCCcChHHHHHHHHHHcCCCEEEEEeCCEEEEEEeCCcccCCccccccceEEEecCceEEEEeccchH
Confidence            4799999999999999999999999999999999999999999999999998864  57899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEE
Q psy1918          86 ARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMA  165 (251)
Q Consensus        86 ~~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a  165 (251)
                      ++.+.+.++.+++.|+..++++++++.+++.+++.+|.++++...|||+++++++|+|++||+||.+||.|++.+++++|
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~~li~g~d~~~~~ly~id~~G~~~~~~~~a  161 (233)
T d1irub_          82 YRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATA  161 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECSSSEEEEEECTTSCEEEBSEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhccccccceEEEeeeecccCCceEEEEcCCcceEecccee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHHh
Q psy1918         166 IGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLI  241 (251)
Q Consensus       166 ~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~~  241 (251)
                      +|+|+..++++|++.|+  ++|+++||++++++||+.++++|.  ++++++|++|+++| +++++++||+++|+.+
T Consensus       162 ~G~gs~~~~~~Le~~~~--~~ms~eea~~l~~~~L~~~~~~d~--~~~~vev~ii~~~g-~~~l~~~eI~~~l~~i  232 (233)
T d1irub_         162 MGKNYVNGKTFLEKRYN--EDLELEDAIHTAILTLKESFEGQM--TEDNIEVGICNEAG-FRRLTPTEVKDYLAAI  232 (233)
T ss_dssp             ESTTHHHHHHHHHHHCC--TTCCHHHHHHHHHHHHHTTCCSCC--CSSSEEEEEEETTE-EEECCHHHHHHHHTTC
T ss_pred             cCCcHHHHHHHHHhhcc--cCccHHHHHHHHHHHHHHHHhccC--CCCcEEEEEEeCCC-eEECCHHHHHHHHHHh
Confidence            99999999999999999  699999999999999999999884  56789999999885 9999999999999875

>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit (non-catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=7.2e-61  Score=403.72  Aligned_cols=219  Identities=35%  Similarity=0.539  Sum_probs=210.0

Q ss_pred             eeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHHHHHHHHHHH
Q psy1918          16 TVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADARILARFM   93 (251)
Q Consensus        16 t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l   93 (251)
                      |+|||||||+|||||++|+++|+|+|||+++||||||+|++.+.++.  ++.+|||+|++|++|+++|..+|++.+.+.+
T Consensus         1 t~fsp~G~l~QvEYa~~av~~G~t~vgi~~~dgVvlaad~r~~~~~~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~   80 (221)
T d1yara1           1 TVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFA   80 (221)
T ss_dssp             CCCCTTSCCHHHHHHHHHHTTSCCEEEEEETTEEEEEECCCCCCTTBCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHH
T ss_pred             CeECCCCcchHHHHHHHHHhcCCcEEEEEeCCEEEEEEecccCCcccccCccceEEEecCCceEEeeeccchHHHHHHHH
Confidence            79999999999999999999999999999999999999999887664  5778999999999999999999999999999


Q ss_pred             HHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEEcCChHHH
Q psy1918          94 RMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSA  173 (251)
Q Consensus        94 ~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~G~g~~~a  173 (251)
                      +.++..|++.++++++++.+++.++..++.|+++.++|||++++||+|||++||+||++||.|++.+++++|+|+|++.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rP~~~~~li~G~d~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~  160 (221)
T d1yara1          81 RISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAV  160 (221)
T ss_dssp             HHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECSSCEEEEEECTTCCEEEBSEEEESTTHHHH
T ss_pred             HHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhccCCCcceEEEEEEEecCCCeEEEEcCCccEEEeeEEEECCchHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHH
Q psy1918         174 RTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYL  238 (251)
Q Consensus       174 ~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l  238 (251)
                      +++|+++|+  |+||++||++++++||+.++++|  .+.++++|++|++++++++|+++||+++|
T Consensus       161 ~~~Le~~~~--~~ms~~ea~~la~~~l~~~~~~~--~~~~~~ei~~i~~~~~~r~l~~~ei~~~l  221 (221)
T d1yara1         161 VSFLEREYK--ENLPEKEAVTLGIKALKSSLEEG--EELKAPEIASITVGNKYRIYDQEEVKKFL  221 (221)
T ss_dssp             HHHHHHHCC--TTCCHHHHHHHHHHHHHHTSCSS--CCCCCCEEEEEETTSCCEECCHHHHHTTC
T ss_pred             HHHHHHHhh--ccccHHHHHHHHHHHHHHHHhcc--CCCCCcEEEEEEcCCCEEECCHHHHHHhC
Confidence            999999998  79999999999999999999876  46779999999988789999999999864

>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-60  Score=408.08  Aligned_cols=233  Identities=29%  Similarity=0.423  Sum_probs=215.9

Q ss_pred             ccCCCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHHHH
Q psy1918           9 NQYDSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADA   86 (251)
Q Consensus         9 ~~yd~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~   86 (251)
                      ++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++++.  +..+||++|+++++|+++|+.+|+
T Consensus         2 ~gyd~~~t~fsp~Grl~QvEya~kav~~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~   81 (244)
T d1rypg_           2 TGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPDG   81 (244)
T ss_dssp             CCTTSSTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEECCCTTBCTTTSCCCEEETTTEEEEEEECHHHH
T ss_pred             CCcCCCCceECCCCeehHHHHHHHHHHcCCCEEEEEeCCEEEEEEecccCCCCccccccceEEEccCceEEEEccchhhH
Confidence            799999999999999999999999999999999999999999999999999874  456899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEE
Q psy1918          87 RILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAI  166 (251)
Q Consensus        87 ~~l~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~  166 (251)
                      +.+++.++.+++.|++.++++++++.+++.++..+|.|+++++.|||++++|+||||++||+||.+||+|++.+++++|+
T Consensus        82 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~t~~~~~RP~~~~~iiaG~D~~gp~Ly~idp~Gs~~~~~~~a~  161 (244)
T d1rypg_          82 RHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAAT  161 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSCEEEBSEEEE
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhcccccCCceEEEEEEEEeCCCCEEEEEcCCccEEecCeEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHH---hhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecC---CceEEecHHHHHHHHHH
Q psy1918         167 GSRSQSARTYLEK---RLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQN---QKFKTLDERETGHYLSL  240 (251)
Q Consensus       167 G~g~~~a~~~L~~---~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~---~~~~~l~~~ei~~~l~~  240 (251)
                      |+|+..++++||+   .|+  ++||++||++++++||+.+++++. .++.+++|++|+.+   +.++.++.++++++++.
T Consensus       162 G~gs~~~~~~Lek~~~~~~--~~mt~eeai~la~~~L~~~~~~~~-~~~~~iev~ii~~~~~~~~~~~~~~e~~~~~~~~  238 (244)
T d1rypg_         162 GKGRQSAKAELEKLVDHHP--EGLSAREAVKQAAKIIYLAHEDNK-EKDFELEISWCSLSETNGLHKFVKGDLLQEAIDF  238 (244)
T ss_dssp             STTHHHHHHHHHHHHHHCT--TCCCHHHHHHHHHHHHHHHGGGGT-TSCEEEEEEEEETTTTTTSEEECCTHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHHHHhccc-CCCCeEEEEEEEEEcCCCeEEECCHHHHHHHHHH
Confidence            9999999999996   466  699999999999999999998764 56778999999743   34677777777887776


Q ss_pred             hhhh
Q psy1918         241 IEGE  244 (251)
Q Consensus       241 ~~~~  244 (251)
                      .+++
T Consensus       239 ~~~~  242 (244)
T d1rypg_         239 AQKE  242 (244)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            6553

>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.2e-61  Score=408.55  Aligned_cols=233  Identities=31%  Similarity=0.474  Sum_probs=219.5

Q ss_pred             CCCceeecCCCcchhhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccc--cccCceEEEcCcEEEEEeCcHHHHHHH
Q psy1918          12 DSDVTVWSPQGRLHQVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADARIL   89 (251)
Q Consensus        12 d~~~t~fsp~G~l~QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l   89 (251)
                      |+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++++.  ++.+|||+|+++++|++||+.+|++.+
T Consensus         1 d~~~t~fsp~G~l~Qveya~~a~~~G~t~Vgi~~~dgVvla~d~r~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l   80 (242)
T d1rype_           1 DRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTADARSM   80 (242)
T ss_dssp             CCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSTTBCGGGCCCEEEEETTEEEEEEESGGGHHHH
T ss_pred             CCCcceECCCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeCCccCcCcccCccceEEEcCCCEEEEEeecchhHHHH
Confidence            899999999999999999999999999999999999999999999998874  578999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhhhcCC------CCcceeeeeEEEEeC-CCCeEEEECCCCCeeeee
Q psy1918          90 ARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYD------KRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVK  162 (251)
Q Consensus        90 ~~~l~~~~~~~~~~~~~~i~~~~la~~l~~~~~~yt~~~~------~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~  162 (251)
                      .++++.+++.|++.++++++++.+++++++.+|.|+++.+      +|||++++||+|+|+ ++|+||.+||+|++.+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~rP~~~~~ii~G~D~~~~p~L~~idp~G~~~~~~  160 (242)
T d1rype_          81 IEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYN  160 (242)
T ss_dssp             HHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEBS
T ss_pred             HHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHhccccccchhccccceEEEEEEEeccccceEEEEEcCCCceeccc
Confidence            9999999999999999999999999999999999887654      689999999999996 459999999999999999


Q ss_pred             EEEEcCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHHhh
Q psy1918         163 AMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIE  242 (251)
Q Consensus       163 ~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~~~  242 (251)
                      ++|+|+|++.++++|+++|+  ++||++||++++++||+.++++|.  +.++++|++|+++.+|++++++||++++.+++
T Consensus       161 ~~a~G~gs~~~~~~Le~~~~--~~ms~~ea~~la~~~l~~~~~~~~--~~~~~~v~~i~~~~g~~~l~~~~i~~~~~~i~  236 (242)
T d1rype_         161 AKAIGSGSEGAQAELLNEWH--SSLTLKEAELLVLKILKQVMEEKL--DENNAQLSCITKQDGFKIYDNEKTAELIKELK  236 (242)
T ss_dssp             EEEESTTHHHHHHHHHHHCC--TTCCHHHHHHHHHHHHHHHCSSCC--CTTSEEEEEEETTTEEEECCHHHHHHHHHHHH
T ss_pred             eeecccchHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHhccC--CCCceEEEEEECCCCeEECCHHHHHHHHHHHH
Confidence            99999999999999999998  799999999999999999998874  66689999999876799999999999999999


Q ss_pred             hhhhcc
Q psy1918         243 GEERRG  248 (251)
Q Consensus       243 ~~~~~~  248 (251)
                      ++++-|
T Consensus       237 e~~~~e  242 (242)
T d1rype_         237 EKEAAE  242 (242)
T ss_dssp             HHHTTC
T ss_pred             HhhhcC
Confidence            887643

>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=100.00  E-value=3.3e-47  Score=321.13  Aligned_cols=206  Identities=16%  Similarity=0.252  Sum_probs=180.8

Q ss_pred             hhchHHHHHhcCCcEEEeeeCCeEEEEEeccCccccccccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcC
Q psy1918          26 QVEYAMEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHK  105 (251)
Q Consensus        26 QvEya~~a~~~G~tvigi~~~dgVvla~d~~~~~~l~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~  105 (251)
                      |+|||++|+++|+|+|||+++||||||+|+|.+     ..+||++|++||+||++|+.+|++.++++++.+++.|++.++
T Consensus         8 q~eyA~~av~~GtT~vgi~~~~GVvlaad~r~~-----s~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~   82 (227)
T d1q5qa_           8 RSELARKGIARGRSVVVLTFRDGVLFVAENPST-----ALHKVSELYDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYD   82 (227)
T ss_dssp             HHHHHHHHHHTSCCEEEEECSSEEEEEECCSCS-----SSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHhcCCCEEEEEECCEEEEEEccCCC-----CcceEEEecCceEEEecCchHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999854     468999999999999999999999999999999999999998


Q ss_pred             -CCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC----CCCeEEEECCCCCeeeee-EEEEcCChHHHHHHHHH
Q psy1918         106 -DTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD----AGPHIYQTCPSSNYYDVK-AMAIGSRSQSARTYLEK  179 (251)
Q Consensus       106 -~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~----~gp~ly~id~~G~~~~~~-~~a~G~g~~~a~~~L~~  179 (251)
                       .+++++.+++.+++.++... ..+.|||++++||||||.    +||+||.+||+|++.+++ +++.|.+++.++++|++
T Consensus        83 ~~~~~~~~la~~~~~~~~~~~-~~~~rP~gvs~lvaG~D~~g~~~~p~Ly~vDpsG~~~~~~~~~~~g~~s~~~~~~Le~  161 (227)
T d1q5qa_          83 RRDVTGRSLANAYAQTLGTIF-TEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRE  161 (227)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHH-HHSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEESSSHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHH-HhcCCCceEEEEEEEEecCCCCCCCEEEEEccccceeeecccccCCCchHHHHHHHHH
Confidence             46899999999998865333 235699999999999985    469999999999998876 46667789999999999


Q ss_pred             hhcCCCCCCHHHHHHHHHHHHHhhCCCCCC---CCCCeEEEEEEecCC---ceEEecHHHHHHHHH
Q psy1918         180 RLADFPEASLEEIVKHGLRALRDTLPNDSE---LTTKNVSIGLVGQNQ---KFKTLDERETGHYLS  239 (251)
Q Consensus       180 ~~~~~~~~s~~ea~~~~~~al~~~~~~d~~---~~~~~iei~ii~~~~---~~~~l~~~ei~~~l~  239 (251)
                      +|+  |+||++||+++|++||+.++.+|..   +.+.++||++++++|   .|++|+++||+++|.
T Consensus       162 ~y~--~~ms~eea~~la~~aL~~a~~~d~~~~~~~~~~ievavi~k~~~~~~fr~l~~~ei~~~l~  225 (227)
T d1q5qa_         162 SYR--ADLDLEAAVGIAVNALRQGGAGEGEKRNVDVASLEVAVLDQSRPRRAFRRIAGTALEQLVP  225 (227)
T ss_dssp             HCC--TTCCHHHHHHHHHHHHTTCC--------CCSSCSEEEEEETTSSSCCEEECCHHHHHTTSC
T ss_pred             hcc--CCCCHHHHHHHHHHHHHHHhhcccccCCcCcceEEEEEEECCCCccceEEcCHHHHHHHhc
Confidence            999  6999999999999999999987632   356789999999876   499999999998763

>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=8.7e-46  Score=307.17  Aligned_cols=197  Identities=23%  Similarity=0.379  Sum_probs=184.4

Q ss_pred             CcEEEeeeCCeEEEEEeccCcccc---ccccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918          38 SATVGLKNKTHAVIIALKRAASEL---AAHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI  114 (251)
Q Consensus        38 ~tvigi~~~dgVvla~d~~~~~~l---~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la  114 (251)
                      ||+|||+++||||||+|++.+.+.   .++.+|||+|+++++||+||..+|++.+.+.++.+++.|++.++.+++++.++
T Consensus         1 TT~igi~~kdgVvia~D~r~s~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a   80 (203)
T d1yarh1           1 TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVA   80 (203)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             CcEEEEEECCEEEEEECCCcccCCEeecCCcccEEEecCCeeeecCCCcchHHHHHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            699999999999999999998774   36889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHHH
Q psy1918         115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVK  194 (251)
Q Consensus       115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~  194 (251)
                      +++++.++.+.    .|||++++++||+|+ +|+||.+||+|++.+++++|+|+|++.++++|+++|+  |+||++||++
T Consensus        81 ~~l~~~~~~~~----~~p~~~~~lvaG~d~-~p~l~~~d~~G~~~~~~~~a~G~g~~~~~~~L~~~~~--~~~s~eea~~  153 (203)
T d1yarh1          81 TLLSNMLNQVK----YMPYMVQLLVGGIDT-APHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYS--EKMTVDEGVD  153 (203)
T ss_dssp             HHHHHHHHHTT----TSCCCEEEEEEEESS-SEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCC--TTCCHHHHHH
T ss_pred             HHHHHHHHhhc----cCCccceeEEEEEcC-CCeeEecCCccceecccccccCCCcHHHHHHHHHhcc--CCCCHHHHHH
Confidence            99999886543    479999999999985 6999999999999999999999999999999999999  7999999999


Q ss_pred             HHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHHhh
Q psy1918         195 HGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIE  242 (251)
Q Consensus       195 ~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~~~  242 (251)
                      ++++||+.+.++|. .++++++|++|+++.++++++++||+++++++.
T Consensus       154 l~~~~l~~~~~~d~-~~~~~v~v~ii~~~~g~~~l~~~ei~~~~~~~~  200 (203)
T d1yarh1         154 LVIRAISAAKQRDS-ASGGMIDVAVITRKDGYVQLPTDQIESRIRKLG  200 (203)
T ss_dssp             HHHHHHHHHHHHCT-TCCSCCEEEEEETTTEEEECCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcC-CCCCeEEEEEEECCCCEEECCHHHHHHHHHHhC
Confidence            99999999999996 788899999999876799999999999998863

>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.9e-46  Score=307.80  Aligned_cols=197  Identities=18%  Similarity=0.270  Sum_probs=186.4

Q ss_pred             CcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918          38 SATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI  114 (251)
Q Consensus        38 ~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la  114 (251)
                      ||+|||+++||||||+|++.+++..   ++.+|||+|+++++|+++|..+|++.+.+.++.+++.|++.++.+++++.++
T Consensus         1 TT~igi~~~dgVvlaaD~~~t~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a   80 (201)
T d1irul_           1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS   80 (201)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             CeEEEEEECCEEEEEEcCccccCCEeecCCcccEEEeCCcEEEEEcCccchHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Confidence            6999999999999999999998753   5789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHHH
Q psy1918         115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVK  194 (251)
Q Consensus       115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~  194 (251)
                      +++++.++.|+    .+||+++++++|+|++||+||.+||+|++.+++++|+|+|+++++++|++.|+  ++||.+||++
T Consensus        81 ~~l~~~~~~~~----~~p~~~~~lvaG~d~~~~~l~~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~--~~ms~eea~~  154 (201)
T d1irul_          81 KLLANMVYQYK----GMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYS--YDLEVEQAYD  154 (201)
T ss_dssp             HHHHHHHHTTT----TSCCCBEEEEEEECSSSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCC--TTCCHHHHHH
T ss_pred             HHHHHHhhhcc----CCCceEEEEEEEEecCCceEEEEccCceEEEeeeEEecCchHHHHHHHHhhcc--CCCCHHHHHH
Confidence            99999996654    36999999999999999999999999999999999999999999999999998  6999999999


Q ss_pred             HHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHHhh
Q psy1918         195 HGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIE  242 (251)
Q Consensus       195 ~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~~~  242 (251)
                      ++++||+.+.++|. .++++++|++|+++| +++++++||.+++.+++
T Consensus       155 l~~~~l~~~~~~d~-~sg~~~~v~~i~~~G-~~~i~~~ev~~~~~~~~  200 (201)
T d1irul_         155 LARRAIYQATYRDA-YSGGAVNLYHVREDG-WIRVSSDNVADLHEKYS  200 (201)
T ss_dssp             HHHHHHHHHHHHBT-TCCSEEEEEEECSSC-EEEEEEEEHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCC-CCCCceEEEEEeCCc-eEEECHHHHHHHHHhhc
Confidence            99999999999996 799999999999997 99999999999988765

>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=5.1e-45  Score=301.87  Aligned_cols=198  Identities=28%  Similarity=0.406  Sum_probs=185.7

Q ss_pred             CcEEEeeeCCeEEEEEeccCcccc---ccccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918          38 SATVGLKNKTHAVIIALKRAASEL---AAHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI  114 (251)
Q Consensus        38 ~tvigi~~~dgVvla~d~~~~~~l---~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la  114 (251)
                      ||+|||+++||||||+|++.+.+.   .++.+|||+|+++++||+||..+|++.+.++++.+++.|++.++.+++++.++
T Consensus         1 TT~vgi~~~dgVvlaaD~r~s~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a   80 (202)
T d1j2qh_           1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA   80 (202)
T ss_dssp             CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             CcEEEEEECCEEEEEECCCcccCCeeccCccceEEEecCcEEEEecCcchhHHHHHHHHHHHhhhhhhccCCCccHHHHH
Confidence            699999999999999999988764   25789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeee-eEEEEcCChHHHHHHHHHhhcCCCCCCHHHHH
Q psy1918         115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDV-KAMAIGSRSQSARTYLEKRLADFPEASLEEIV  193 (251)
Q Consensus       115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~-~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~  193 (251)
                      +++++++|.|++    |||++++++||+|++||+||.+||+|++.++ .++|+|+|+..++++|+++|+  |+|+++||+
T Consensus        81 ~~~~~~~~~~~~----~p~~~~~lvaG~d~~~~~l~~~d~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~--~~ms~~ea~  154 (202)
T d1j2qh_          81 TLTSNLLNSYRY----FPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFT--PEIGVDEAV  154 (202)
T ss_dssp             HHHHHHHHHTTT----SCCCEEEEEEEEETTEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCC--TTCCHHHHH
T ss_pred             HHHHHHHhhhcc----cceeeEEEEEEEcCCCceEEEEeCCCCeEeecceEEccCChHHHHHHHHhhcC--CCCCHHHHH
Confidence            999999977653    6999999999999999999999999998766 589999999999999999998  799999999


Q ss_pred             HHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHHhhh
Q psy1918         194 KHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEG  243 (251)
Q Consensus       194 ~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~~~~  243 (251)
                      +++++||+.++++|. .++++++|++|+++| +++++++||++++.+++|
T Consensus       155 ~l~~~al~~~~~~d~-~~g~~v~v~~i~~~g-~~~~~~~ei~~~l~~~~k  202 (202)
T d1j2qh_         155 ELAVRAIYSAMKRDS-ASGDGIDVVKITEDE-FYQYSPEEVEQILAKFRK  202 (202)
T ss_dssp             HHHHHHHHHHHTTCT-TSCSCEEEEEECSSC-EEECHHHHHHHHGGGTTC
T ss_pred             HHHHHHHHHHHHhcC-CCCCeEEEEEEECCC-EEEeCHHHHHHHHHHhhC
Confidence            999999999999996 788899999999996 999999999999988864

>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-44  Score=302.38  Aligned_cols=202  Identities=18%  Similarity=0.261  Sum_probs=188.2

Q ss_pred             CcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918          38 SATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI  114 (251)
Q Consensus        38 ~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la  114 (251)
                      ||+|||+|+||||||+|++.+++..   ++.+|||+|+++++||++|..+|++.+.+.++.++..|++.++++++++.++
T Consensus         1 TT~iai~~kdgVvlaaD~r~t~g~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a   80 (212)
T d1rypl_           1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS   80 (212)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             CeEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEeccchHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            7999999999999999999988743   5789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHH
Q psy1918         115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIV  193 (251)
Q Consensus       115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~  193 (251)
                      +++++.++.|.    ..|+++..+++|+|+ +||+||.+||.|++.+++++|+|+|++.++++|++.|+  |+|+++||+
T Consensus        81 ~~ls~~~~~~~----~~p~~~~~~l~G~~~~~g~~Ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~--~~mt~~ea~  154 (212)
T d1rypl_          81 KILSNLVYQYK----GAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYK--WDLSVEDAL  154 (212)
T ss_dssp             HHHHHHHHHTT----TSCCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCC--TTCCHHHHH
T ss_pred             HHHHHHHHHhc----cCCcceEeeeeEeecCCCCEEEEECCCceEEecceEEEccCcccchhHHHHhcc--CCCCHHHHH
Confidence            99999996553    258899999999876 57999999999999999999999999999999999998  699999999


Q ss_pred             HHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHHhhhhhhc
Q psy1918         194 KHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGEERR  247 (251)
Q Consensus       194 ~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~~~~~~~~  247 (251)
                      +++++||+.+.+||. .++++++|++|+++| +++++++||.+++.++++++.-
T Consensus       155 ~l~~~al~~~~~rd~-~sg~~v~v~vi~~~g-~~~~~~~ev~~~~~~~~~~~~~  206 (212)
T d1rypl_         155 YLGKRSILAAAHRDA-YSGGSVNLYHVTEDG-WIYHGNHDVGELFWKVKEEEGS  206 (212)
T ss_dssp             HHHHHHHHHHHHHBT-TCCSEEEEEEEETTE-EEEEEEEEHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHhcC-CCCCceEEEEEcCCc-eEEeCHHHHHHHHHHHHHhhcc
Confidence            999999999999996 799999999999996 9999999999999999877643

>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.7e-45  Score=300.38  Aligned_cols=191  Identities=18%  Similarity=0.297  Sum_probs=179.3

Q ss_pred             CcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918          38 SATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI  114 (251)
Q Consensus        38 ~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la  114 (251)
                      +|+|||+++||||||+|++.+.+..   ++.+|||+|++|++|+++|..+|++.+.+.++.+++.|+++++.+++++.++
T Consensus         2 ~tiigi~~~dgVvlaaD~r~s~g~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   81 (198)
T d1rypk_           2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVS   81 (198)
T ss_dssp             CCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred             eEEEEEEECCEEEEEEcCCcccCCEeecCccceEEEecCCEEEEecCCcccHHHHHHHHHHHHHHHHHHhCCCcchHHHH
Confidence            5899999999999999999998864   5789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCcceeeeeEEEEeC--CCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHH
Q psy1918         115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDD--AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEI  192 (251)
Q Consensus       115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~--~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea  192 (251)
                      +++++.++.+++  ..|||++++||||||+  +||+||++||.|++.+++++|+|+|+..++++|+++|+  |+|+++||
T Consensus        82 ~~i~~~~~~~~~--~~~P~~~~~liaG~D~~~~~p~L~~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~--~~~~~eea  157 (198)
T d1rypk_          82 SFVRQELAKSIR--SRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYR--PDMTTEEG  157 (198)
T ss_dssp             HHHHHHHHHHTT--SSSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCC--TTCCHHHH
T ss_pred             HHHHHHHHHHHh--cccccceEEEEEEEecCCCceEEEEecccccEEecceEEEeccchhhHHHHHhccc--ccCCHHHH
Confidence            999999976655  4599999999999995  47999999999999999999999999999999999999  69999999


Q ss_pred             HHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHH
Q psy1918         193 VKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERET  234 (251)
Q Consensus       193 ~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei  234 (251)
                      ++++++||+.+..||. .++++++|++|+++| +++++++|+
T Consensus       158 ~~l~~~~l~~~~~~d~-~s~~~~~v~vi~~dG-~~~~~~~~~  197 (198)
T d1rypk_         158 LDLLKLCVQELEKRMP-MDFKGVIVKIVDKDG-IRQVDDFQA  197 (198)
T ss_dssp             HHHHHHHHHHHHHHCS-BCCCCEEEEEEETTE-EEEECCCSC
T ss_pred             HHHHHHHHHHHHHhcC-cCCCcEEEEEEcCCC-eEEcchhcc
Confidence            9999999999999996 788999999999996 999998875

>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-44  Score=299.49  Aligned_cols=195  Identities=17%  Similarity=0.176  Sum_probs=178.1

Q ss_pred             HHhcCCcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q psy1918          33 AVKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLP  109 (251)
Q Consensus        33 a~~~G~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~  109 (251)
                      .+++|+|+|||+++||||||+|++.+++..   ++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++ +
T Consensus         5 ~v~~GtTivgi~~~dgVvlaaD~r~s~g~~i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~-~   83 (205)
T d1ryph_           5 EVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGTP-S   83 (205)
T ss_dssp             CCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSC-C
T ss_pred             cccCcceEEEEEECCEEEEEECCccccCceeeccccceEEEccCceEEeeccchhHHHHHHHHHHHHHHHHHHHcCCc-c
Confidence            368999999999999999999999988753   578999999999999999999999999999999999999999965 5


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCC
Q psy1918         110 VFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEAS  188 (251)
Q Consensus       110 ~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s  188 (251)
                      +..+++.+++.+  |.+   .+||++++++||||+ ++|+||.+||.|++.+++++|+|+|+.+++++|++.|+  |+||
T Consensus        84 ~~~~~~~~~~~~--~~~---~~p~~~~~lvaG~d~~~~p~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~--~~ms  156 (205)
T d1ryph_          84 TETAASVFKELC--YEN---KDNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFR--ENMS  156 (205)
T ss_dssp             HHHHHHHHHHHH--HHT---TTTCCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCC--TTCC
T ss_pred             HHHHHHHHHHHH--HhC---ccCceEEEEEEeecCCCCcEEEEECCCCcEEecCeEEeecCcHHHHHHHHhhhh--cccC
Confidence            788999999888  433   369999999999996 56999999999999999999999999999999999998  7999


Q ss_pred             HHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCC-ceEEecHHHHHH
Q psy1918         189 LEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQ-KFKTLDERETGH  236 (251)
Q Consensus       189 ~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~-~~~~l~~~ei~~  236 (251)
                      ++||++++++||+.+++||. .++++++|++|+++| .++.+.++|+++
T Consensus       157 ~~ea~~l~~~al~~a~~rD~-~sg~~v~v~iitk~G~~~~~~~~~e~~~  204 (205)
T d1ryph_         157 KEETVDFIKHSLSQAIKWDG-SSGGVIRMVVLTAAGVERLIFYPDEYEQ  204 (205)
T ss_dssp             HHHHHHHHHHHHHHHHHHBT-TCCSCEEEEEEETTEEEEEEECHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHhcC-cCCCCEEEEEEcCCceEEEecCcccccc
Confidence            99999999999999999996 789999999999997 345578999864

>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.2e-45  Score=309.19  Aligned_cols=211  Identities=15%  Similarity=0.225  Sum_probs=190.5

Q ss_pred             HHHHhcCCcEEEeeeCCeEEEEEeccCcccc---ccccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhc---
Q psy1918          31 MEAVKQGSATVGLKNKTHAVIIALKRAASEL---AAHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAH---  104 (251)
Q Consensus        31 ~~a~~~G~tvigi~~~dgVvla~d~~~~~~l---~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~---  104 (251)
                      ++|+.+|+|+|||+++||||||+|++.+.+.   .++.+|||+|++|++|+++|..+|++.+.+.++.++..|++.+   
T Consensus         2 ~~~i~tGtTivgi~~~dgVvlaaD~r~s~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~   81 (233)
T d1ryp2_           2 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLA   81 (233)
T ss_dssp             CCCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred             CCCccccceEEEEEECCEEEEEECCCcccCCeeecCCcceEEEeCCCEEEEeccCchHHHHHHHHHHHHHHHHHHhhCCC
Confidence            3578899999999999999999999988653   2578999999999999999999999999999999999998876   


Q ss_pred             --CCCCCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCC-CeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhh
Q psy1918         105 --KDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAG-PHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRL  181 (251)
Q Consensus       105 --~~~i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~g-p~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~  181 (251)
                        +.+++++.+++++++.+  |+++..+|||+++++|+|+|++| |+||.+||.|++.+++++|+|+|+++++++|++.|
T Consensus        82 ~~~~~~~~~~~a~~l~~~~--y~~~~~~~P~~~~~liaG~d~~g~~~ly~~d~~G~~~~~~~~a~G~g~~~a~~~Le~~~  159 (233)
T d1ryp2_          82 DAEEALEPSYIFEYLATVM--YQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVV  159 (233)
T ss_dssp             TTTTSCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTC
T ss_pred             CCCcccCHHHHHHHHHHHH--HhhccccCCceeEEEEEEEcCCCCeEEEEEcCCCcEEeeeeEEecCccHHHHHHHHHHH
Confidence              56789999999999987  78777889999999999999755 78999999999999999999999999999999999


Q ss_pred             cC---CCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHHHHHHhhhh
Q psy1918         182 AD---FPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGHYLSLIEGE  244 (251)
Q Consensus       182 ~~---~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~~l~~~~~~  244 (251)
                      ++   .|+|+++||++++++||+.+++||+ .++++|+|++|+++++++++.+++|++....+++.
T Consensus       160 ~~~~~~~~ms~eeA~~l~~~al~~~~~rD~-~sg~~i~i~~itkd~g~~~~~~~~ie~~~~~~a~~  224 (233)
T d1ryp2_         160 DRESDIPKTTVQVAEEAIVNAMRVLYYRDA-RSSRNFSLAIIDKNTGLTFKKNLQVENMKWDFAKD  224 (233)
T ss_dssp             CSGGGGGGCCHHHHHHHHHHHHHHHHHHBT-TCCSEEEEEEEETTTEEEEEEEEECCSCCCGGGGG
T ss_pred             hhcccccccCHHHHHHHHHHHHHHHHHhcc-cCCCCEEEEEEECCCCEEECChhcchhhhhhHhhh
Confidence            74   2689999999999999999999996 79999999999998779999999997755455443

>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-43  Score=297.25  Aligned_cols=200  Identities=17%  Similarity=0.163  Sum_probs=184.4

Q ss_pred             HHHhcCCcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhh-hcCCC
Q psy1918          32 EAVKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKY-AHKDT  107 (251)
Q Consensus        32 ~a~~~G~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~-~~~~~  107 (251)
                      +++.+|+|+|||+++||||||+|+|.+.+..   ++.+||++|+++++||++|..+|++.+.+.++.++..|+. .++.+
T Consensus         3 ~~~~~GtTivgi~~~dgVviaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~   82 (217)
T d1iru2_           3 NPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHS   82 (217)
T ss_dssp             SCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSCC
T ss_pred             CCcCcccEEEEEEECCEEEEEEcCCcccCCeeecCCcceEEEeCCCeEEEeccccHHHHHHHHHHHHHHHHhhhhcCCCC
Confidence            4577999999999999999999999887642   6789999999999999999999999999999999988775 45689


Q ss_pred             CCHHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCC
Q psy1918         108 LPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEA  187 (251)
Q Consensus       108 i~~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~  187 (251)
                      ++++.+++++++.+  |+++...|||+++++++|+|+++|+||.+||.|++.+++++|+|+|+.+++++|++.|++.|+|
T Consensus        83 ~~v~~~a~~l~~~~--y~~~~~~~p~~~~~li~G~d~~~~~l~~~D~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~l  160 (217)
T d1iru2_          83 YSPRAIHSWLTRAM--YSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVL  160 (217)
T ss_dssp             CCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEEETTEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCSCC
T ss_pred             CCHHHHHHHHHHHH--HHhccccCcccceEEEEEEcCCCcEEEEEecCceeEeeeEEeccCcHHHHHHHHHHHhcccCCC
Confidence            99999999999987  7888788999999999999999999999999999999999999999999999999998766899


Q ss_pred             CHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHH
Q psy1918         188 SLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETG  235 (251)
Q Consensus       188 s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~  235 (251)
                      +++||++++++||+.+.+||. .++++++|++|+++| ++++.+++++
T Consensus       161 t~~ea~~l~~~al~~a~~rd~-~sg~~i~i~vi~~~G-~~~~~~~~~~  206 (217)
T d1iru2_         161 SQTEARDLVERCMRVLYYRDA-RSYNRFQTATVTEKG-VEIEGPLSTE  206 (217)
T ss_dssp             CHHHHHHHHHHHHHHHHHHBT-TCCSCEEEEEEETTE-EEEEEEECCC
T ss_pred             CHHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEEeCCC-EEEcCCeecc
Confidence            999999999999999999996 789999999999996 8888777664

>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.6e-43  Score=288.87  Aligned_cols=192  Identities=15%  Similarity=0.144  Sum_probs=177.9

Q ss_pred             CcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918          38 SATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI  114 (251)
Q Consensus        38 ~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la  114 (251)
                      ||+|||+++||||||+|++.+++..   ++.+||++|++|++||++|..+|++.+.+.++.+++.|+++++.+++++.++
T Consensus         1 TTivai~~~dgVvlaaD~r~t~g~~i~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a   80 (202)
T d1iruh_           1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA   80 (202)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred             CeEEEEEECCEEEEEECCccccCCeeecCCcceEEEcCCcEEEEeccchHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence            6999999999999999999998753   5789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHH
Q psy1918         115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIV  193 (251)
Q Consensus       115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~  193 (251)
                      +++++.++.|     ++||+++++++|+|+ ++|+||.+||.|++.+.+++|+|+|+.+++++|++.|+  ++|+++||+
T Consensus        81 ~~l~~~l~~~-----~~p~~~~~lvaG~d~~~~~~l~~~d~~g~~~~~~~~a~G~g~~~a~~~L~~~~~--~~~~~~ea~  153 (202)
T d1iruh_          81 SLFKEMCYRY-----REDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYR--EGMTKEECL  153 (202)
T ss_dssp             HHHHHHHHHT-----TTTCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCC--TTCCHHHHH
T ss_pred             HHHHHHHHhh-----ccceeEEEEEEEeecCCCcEEEEECCCCceeecceeEEeCCHHHHHHHHHHhhc--cCCcHHHHH
Confidence            9999998544     259999999999997 56999999999999999999999999999999999998  699999999


Q ss_pred             HHHHHHHHhhCCCCCCCCCCeEEEEEEecCC-ceEEecHHHHHHH
Q psy1918         194 KHGLRALRDTLPNDSELTTKNVSIGLVGQNQ-KFKTLDERETGHY  237 (251)
Q Consensus       194 ~~~~~al~~~~~~d~~~~~~~iei~ii~~~~-~~~~l~~~ei~~~  237 (251)
                      +++++||+.+++||. .++++++|++|+++| .++.++++||+++
T Consensus       154 ~l~~~al~~a~~rD~-~sg~~i~v~vi~~~G~~~~~~~~d~~~~~  197 (202)
T d1iruh_         154 QFTANALALAMERDG-SSGGVIRLAAIAESGVERQVLLGDQIPKF  197 (202)
T ss_dssp             HHHHHHHHHHHHHBT-TCCSCEEEEEEETTEEEEEEECGGGSCCC
T ss_pred             HHHHHHHHHHHhhCC-CCCCCEEEEEEeCCCeEEEEcCHHHhhhh
Confidence            999999999999996 789999999999997 2455999887654

>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=9.1e-43  Score=292.39  Aligned_cols=190  Identities=19%  Similarity=0.246  Sum_probs=178.0

Q ss_pred             CcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918          38 SATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI  114 (251)
Q Consensus        38 ~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la  114 (251)
                      ||+|||+|+||||||+|++.+++..   ++.+|||+|++|++|+++|..+|++.+.+.++.+++.|++.+|.+++++.++
T Consensus         1 TTivgi~~~dgVvlaaD~r~s~g~~i~~~~~~KI~~i~~~i~~~~aG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a   80 (220)
T d1irui_           1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN   80 (220)
T ss_dssp             CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred             CeEEEEEECCEEEEEEcCCcccCCEeecCCcccEEEecCcEEEEEccccHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence            6999999999999999999999864   4779999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHHH
Q psy1918         115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVK  194 (251)
Q Consensus       115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~  194 (251)
                      +++++.+  |..   .+|+++++|++|+|++||+||.+||.|++.+++++|+|+|+.+++++|++.|+  ++||++||++
T Consensus        81 ~~l~~~~--y~~---~~p~~~~~ivaG~D~~g~~L~~id~~G~~~~~~~~a~Gsgs~~a~~~L~~~~~--~~~s~~ea~~  153 (220)
T d1irui_          81 RMLKQML--FRY---RGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFR--PDMEEEEAKN  153 (220)
T ss_dssp             HHHHHHH--HHT---TTCSCEEEEEEEECSSCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCC--TTCCHHHHHT
T ss_pred             HHHHhhh--hhc---ccccceeEEEEEEeCCCcEEEEEeCCCcEEEeeEEEEccccHHHHHHHHHhcc--cCCCHHHHHH
Confidence            9999998  432   26999999999999999999999999999999999999999999999999998  6999999999


Q ss_pred             HHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHHHHH
Q psy1918         195 HGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERETGH  236 (251)
Q Consensus       195 ~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~ei~~  236 (251)
                      ++++||+.+.+||. .++++++|++|+++| ++++.+.++++
T Consensus       154 l~~~al~~~~~~D~-~sg~~i~i~vitkdg-~~~~~~~~~~~  193 (220)
T d1irui_         154 LVSEAIAAGIFNDL-GSGSNIDLCVISKNK-LDFLRPYTVPN  193 (220)
T ss_dssp             HHHHHHHHHHHHCT-TCCSCEEEEEEETTE-EECCSEEECCC
T ss_pred             HHHHHHHHhhccCC-CCCCcEEEEEEECCC-eEEeCcccccc
Confidence            99999999999996 799999999999996 88888877643

>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.3e-41  Score=284.21  Aligned_cols=187  Identities=20%  Similarity=0.208  Sum_probs=173.1

Q ss_pred             CcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918          38 SATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI  114 (251)
Q Consensus        38 ~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la  114 (251)
                      ||+|||+++||||||+|++.+.+..   ++.+|||+|+++++||++|..+|++.+.+.++.++..|++.++.++++..++
T Consensus         1 TTiVgik~~dGVviaaD~r~s~g~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~v~~~a   80 (222)
T d1rypi_           1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL   80 (222)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred             CeEEEEEECCEEEEEECCCcccCceeecCCcccEEEEcCCEEEEecccchHHHHHHHHHHHHHHHhhhhhCCCCcHHHHH
Confidence            6999999999999999999998753   5789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHHH
Q psy1918         115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVK  194 (251)
Q Consensus       115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~  194 (251)
                      +.+++.+  |..   .+||++++++||+|++||+||.+||.|++.+++++|+|+|++.++++|++.|+  |+|+++||++
T Consensus        81 ~~l~~~~--~~~---~~p~~~~~l~aG~d~~g~~Ly~id~~G~~~~~~~~a~Gsg~~~a~~~Le~~~k--~~ms~eea~~  153 (222)
T d1rypi_          81 QMLKQHL--FKY---QGHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWK--QDLTKEEAIK  153 (222)
T ss_dssp             HHHHHHH--HHT---TTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCC--SSCCHHHHHH
T ss_pred             HHHHHHH--Hhh---hhccceeEEEEEEcCCCcEEEEEecCcceEEeeEEEECCCcHHHHHHHHhhcc--CCCCHHHHHH
Confidence            9999887  322   36999999999999999999999999999999999999999999999999999  7999999999


Q ss_pred             HHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHH
Q psy1918         195 HGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDER  232 (251)
Q Consensus       195 ~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~  232 (251)
                      ++++||+.+++||. .++++++|++|++++..+++.+.
T Consensus       154 l~~~al~~a~~~D~-~sg~~i~i~vi~~~~~~~~~~~~  190 (222)
T d1rypi_         154 LASDAIQAGIWNDL-GSGSNVDVCVMEIGKDAEYLRNY  190 (222)
T ss_dssp             HHHHHHHHHHHHCT-TCCSCEEEEEEETTSCEEEEEEE
T ss_pred             HHHHHHHHHhcccC-CCCCcEEEEEEEcCCCeEEecCc
Confidence            99999999999996 79999999999987666666543

>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=100.00  E-value=4.6e-41  Score=282.15  Aligned_cols=204  Identities=21%  Similarity=0.194  Sum_probs=187.2

Q ss_pred             CcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918          38 SATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI  114 (251)
Q Consensus        38 ~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la  114 (251)
                      ||+|||+++||||||+|++.+++..   ++.+||++|+++++|+++|..+|++.+.+.++.+++.|++.++.++++..++
T Consensus         1 TTivgi~~kdgVvlaaD~r~s~g~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T d1q5qh_           1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA   80 (224)
T ss_dssp             CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             CeEEEEEECCEEEEEECCCcccCCEeecCCcceEEEeCCcEEEEecccchHHHHHHHHHHHHhHHHHHhhCCCccHHHHH
Confidence            6999999999999999999998742   5789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCcceeeeeEEEEe------CCCCeEEEECCCCCeeee--eEEEEcCChHHHHHHHHHhhcCCCC
Q psy1918         115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYD------DAGPHIYQTCPSSNYYDV--KAMAIGSRSQSARTYLEKRLADFPE  186 (251)
Q Consensus       115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d------~~gp~ly~id~~G~~~~~--~~~a~G~g~~~a~~~L~~~~~~~~~  186 (251)
                      +.+++.++.|++. ..+|+++.++++|++      ..+|+||.+||.|+..++  +++|+|+|+.+|+++|++.|+  ++
T Consensus        81 ~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~g~d~~~~~~l~~~d~~G~~~~~~~~~~a~GsG~~~a~~~Le~~~~--~~  157 (224)
T d1q5qh_          81 NRLASMVRGNLGA-AMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYS--PD  157 (224)
T ss_dssp             HHHHHHHHTTHHH-HTTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCC--TT
T ss_pred             HHHHHHHHHhhcc-cccCccceeeEEEeecccccccCCceEEEEEccCcEEEeccceeeecCccHHHHHHHHHhhc--cc
Confidence            9999999988764 468999999998886      247999999999998765  789999999999999999999  79


Q ss_pred             CCHHHHHHHHHHHHHhhCCCCCCCCCC-------eEEEEEEecCCceEEecHHHHHHHHHHhhhhhh
Q psy1918         187 ASLEEIVKHGLRALRDTLPNDSELTTK-------NVSIGLVGQNQKFKTLDERETGHYLSLIEGEER  246 (251)
Q Consensus       187 ~s~~ea~~~~~~al~~~~~~d~~~~~~-------~iei~ii~~~~~~~~l~~~ei~~~l~~~~~~~~  246 (251)
                      ||++||++++++||+.+++||. .+|+       ++++++++++| +++++++||+++++++.+++.
T Consensus       158 mt~~ea~~l~~~al~~a~~rD~-~SGg~~~~~~~~~~~~~i~~~g-~~~l~~~ei~~~~~~~~~~~~  222 (224)
T d1q5qh_         158 SDEETALRAAIESLYDAADDDS-ATGGPDLTRGIYPTAVTITQAG-AVHVSEETTSELARRIVAERT  222 (224)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHCT-TTCCCBTTTTBCCEEEEEETTE-EEECCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhhcc-ccCCcccccccceEEEEEeCCc-EEEcCHHHHHHHHHHHHHHHh
Confidence            9999999999999999999996 5665       48999999996 999999999999999998764

>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.5e-40  Score=272.82  Aligned_cols=183  Identities=18%  Similarity=0.265  Sum_probs=169.7

Q ss_pred             hcCCcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHH
Q psy1918          35 KQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVF  111 (251)
Q Consensus        35 ~~G~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~  111 (251)
                      -+|+|+|||+++||||||+|++.+.+..   ++.+|||+|+++++||++|..+|++.+.++++.+++.|++.++.+++++
T Consensus         5 ~nG~Tvigi~~~dgVvlaaD~r~s~g~~~~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~   84 (204)
T d1iruj_           5 YNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPY   84 (204)
T ss_dssp             SSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCHH
T ss_pred             eCCceEEEEEECCEEEEEECCCcccCCeeEcCcccEEEEeCCCeEEEeccCchHHHHHHHHHHHhhhhhhhhcccccchH
Confidence            4799999999999999999999998853   6789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCC--CCeEEEECCCCCeeee-eEEEEcCChHHHHHHHHHhhcCCCCCC
Q psy1918         112 RLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA--GPHIYQTCPSSNYYDV-KAMAIGSRSQSARTYLEKRLADFPEAS  188 (251)
Q Consensus       112 ~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~--gp~ly~id~~G~~~~~-~~~a~G~g~~~a~~~L~~~~~~~~~~s  188 (251)
                      .+++++++.++.+.    ++||+++++|||||++  +|.+|.+||.|....+ .++++|+|++.++++|++.|+  ++|+
T Consensus        85 ~~a~~l~~~~~~~~----~~p~~~~~lvaG~D~~~~~~~~~~~d~~g~~~~~~~~~~~G~g~~~~~~~l~~~~~--~~ms  158 (204)
T d1iruj_          85 TLMSMVANLLYEKR----FGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWE--PNMD  158 (204)
T ss_dssp             HHHHHHHHHHHTTT----TSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCC--SSCC
T ss_pred             HHHHHHHHHHHHhh----hccceeEEEEEEEcCCCCceEEEEecCCCceeeecceEEechhHHHHHHHHHhccc--cCCC
Confidence            99999999985432    4799999999999974  4789999999997765 579999999999999999999  6999


Q ss_pred             HHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCC
Q psy1918         189 LEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQ  224 (251)
Q Consensus       189 ~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~  224 (251)
                      ++||++++++||+.+.+||. .++++++|++|+++|
T Consensus       159 ~~ea~~l~~~al~~a~~rd~-~sg~~~~v~ii~k~g  193 (204)
T d1iruj_         159 PDHLFETISQAMLNAVDRDA-VSGMGVIVHIIEKDK  193 (204)
T ss_dssp             HHHHHHHHHHHHHHHGGGBT-TSCSCEEEEEEESSB
T ss_pred             HHHHHHHHHHHHHHHHhhcc-cCCCcEEEEEEeCCC
Confidence            99999999999999999996 799999999999997

>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.8e-40  Score=274.48  Aligned_cols=186  Identities=18%  Similarity=0.279  Sum_probs=168.8

Q ss_pred             HhcCCcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcC-CCCC
Q psy1918          34 VKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHK-DTLP  109 (251)
Q Consensus        34 ~~~G~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~-~~i~  109 (251)
                      +.+|+|+|||+++||||||+|++.+.+..   ++.+||++|++|+++++||..+|++.+.++++.+++.|++.++ .+++
T Consensus         6 ~~nG~Tivgi~~~dgVviaaD~r~s~~~~i~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   85 (222)
T d1ryp1_           6 GDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLS   85 (222)
T ss_dssp             CCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEECSTTCEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred             cCCCcEEEEEEECCEEEEEECCCcccCCEeccCCcceEEEecCCEEEEeccChHHHHHHHHHHHHHhhhhhhhcCCCCCc
Confidence            36899999999999999999999988863   5789999999999999999999999999999999999998876 5688


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCC-CeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcC-----
Q psy1918         110 VFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAG-PHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLAD-----  183 (251)
Q Consensus       110 ~~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~g-p~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~-----  183 (251)
                      +..++++++..++    +...|||+++++|+|+|++| |+||.+||.|++.+++++|+|+|++.++++||+.|+.     
T Consensus        86 ~~~~~~~~~~~~~----~~~~~p~~~~~li~G~d~~~~~~Ly~~D~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~~~  161 (222)
T d1ryp1_          86 INSAARNIQHLLY----GKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYE  161 (222)
T ss_dssp             HHHHHHHHHHHHH----TTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCBC
T ss_pred             HHHHHHHHHHHHH----hhhhhhheeeeeEEEEeCCCCeEEEEECCCcEEEEeceEEEcccHHHHHHHHHHhhccccccC
Confidence            8888888776652    33468999999999999765 7999999999999999999999999999999999862     


Q ss_pred             ----------CCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCC
Q psy1918         184 ----------FPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQ  224 (251)
Q Consensus       184 ----------~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~  224 (251)
                                .++||++||++++++||+.+.+||+ .++++++|++|+++|
T Consensus       162 ~~~~~~~~~~~~~lt~~ea~~l~~~al~~a~~rd~-~sg~~v~v~iitkdG  211 (222)
T d1ryp1_         162 PGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHI-QVGDGLEILIVTKDG  211 (222)
T ss_dssp             TTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBT-TCCSEEEEEEEETTE
T ss_pred             cccchhhhcccccccHHHHHHHHHHHHHHHHHhcc-cCCCcEEEEEEeCCC
Confidence                      1589999999999999999999996 789999999999997

>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.6e-39  Score=267.81  Aligned_cols=185  Identities=21%  Similarity=0.258  Sum_probs=169.4

Q ss_pred             hcCCcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHH
Q psy1918          35 KQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVF  111 (251)
Q Consensus        35 ~~G~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~  111 (251)
                      .+|+|+|||+++||||||+|++.+++..   ++.+|||+++ +++|+++|..+|++.+.++++.+++.|+++++.+++++
T Consensus         6 ~nG~Tivgi~~~d~VvlaaD~r~~~~~~~~~~~~~Ki~~i~-~i~~~~~G~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~   84 (204)
T d1rypj_           6 INGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEPE   84 (204)
T ss_dssp             SSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred             cCCeEEEEEEECCEEEEEEcCCcccCCEeecCcccEEEEcC-CEEEEecCcchHHHHHHHHHHHHHHHHHHhcCCCCcch
Confidence            3799999999999999999999998753   5789999995 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeC-CC-CeEEEECCCCCeeee-eEEEEcCChHHHHHHHHHhhcCCCCCC
Q psy1918         112 RLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AG-PHIYQTCPSSNYYDV-KAMAIGSRSQSARTYLEKRLADFPEAS  188 (251)
Q Consensus       112 ~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~-~g-p~ly~id~~G~~~~~-~~~a~G~g~~~a~~~L~~~~~~~~~~s  188 (251)
                      .+++++++.++.+  +  .+||+++++++|||+ +| |+||.+||+|++.++ .++++|+|+..++++|++.|+  |+|+
T Consensus        85 ~la~~l~~~l~~~--~--~~p~~v~~li~G~d~~~g~~~L~~~D~~G~~~~~~~~~~~G~g~~~a~~~l~~~~~--~~ms  158 (204)
T d1rypj_          85 TFTQLVSSSLYER--R--FGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYE--PNLE  158 (204)
T ss_dssp             HHHHHHHHHHHTT--T--TSCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCC--SSCC
T ss_pred             HHHHHHHHHHHhh--c--ccceeeeEEEEEEecCCCcceEEEeCCCCccccccCcEEeecchHHHHHHHHhccc--cCCC
Confidence            9999999988443  2  379999999999995 44 899999999999877 488889999999999999998  7999


Q ss_pred             HHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceE
Q psy1918         189 LEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFK  227 (251)
Q Consensus       189 ~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~  227 (251)
                      ++||++++++||..+.++|. .++++++|++|+++|..+
T Consensus       159 ~~ea~~l~~~al~~a~~~d~-~sg~~~~v~ii~kdg~~~  196 (204)
T d1rypj_         159 PEDLFETISQALLNAADRDA-LSGWGAVVYIIKKDEVVK  196 (204)
T ss_dssp             HHHHHHHHHHHHHHHHTTBT-TSCSCEEEEEEESSCEEE
T ss_pred             HHHHHHHHHHHHHHHHHhcC-ccCCeEEEEEEECCceEE
Confidence            99999999999999999996 789999999999998433

>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.8e-39  Score=264.88  Aligned_cols=190  Identities=20%  Similarity=0.295  Sum_probs=176.1

Q ss_pred             CcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918          38 SATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI  114 (251)
Q Consensus        38 ~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la  114 (251)
                      +++|||+++||||||+|++.+.+..   ++.+|||+|+++++++++|..+|++.+.+.++.+++.|+..++.+++++.++
T Consensus         2 t~ivgi~~kdgVviaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~~G~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   81 (199)
T d1iruk_           2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAA   81 (199)
T ss_dssp             CCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             eEEEEEEECCEEEEEECCCccCCCeeecCCcceEEEecCcEEEEecccchHHHHHHHHHHHHhhhhhhhcCCcCcHHHHH
Confidence            5899999999999999999988753   5779999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCcceeeeeEEEEeCC-CCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHH
Q psy1918         115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA-GPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIV  193 (251)
Q Consensus       115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~-gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~  193 (251)
                      +.+++..+.+  +...+|++++++++|+|++ +|+||.+||.|.+...+++++|+|++.++++|++.|+  ++|+++||+
T Consensus        82 ~~l~~~~~~~--~~~~~~~~~~~~~aG~d~~~~~~l~~~~~~g~~~~~~~~a~G~gs~~a~~~l~~~~~--~~~~~~ea~  157 (199)
T d1iruk_          82 NFTRRNLADC--LRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYT--PTISRERAV  157 (199)
T ss_dssp             HHHHHHHHHH--HTSSSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCC--TTCCHHHHH
T ss_pred             HHHHHHHHHH--hhccCCcceeeeecceeccCCceEEeecccceEEeeeeeeecccchhhhHHHHHhcc--CCCCHHHHH
Confidence            9999988544  3456899999999999985 6999999999999999999999999999999999998  699999999


Q ss_pred             HHHHHHHHhhCCCCCCCCCCeEEEEEEecCCceEEecHHH
Q psy1918         194 KHGLRALRDTLPNDSELTTKNVSIGLVGQNQKFKTLDERE  233 (251)
Q Consensus       194 ~~~~~al~~~~~~d~~~~~~~iei~ii~~~~~~~~l~~~e  233 (251)
                      +++++||+.+.++|. .++++++|++|+++| ++++++..
T Consensus       158 ~l~~~al~~~~~~d~-~sg~~~~v~vv~~~g-~~~~~~~~  195 (199)
T d1iruk_         158 ELLRKCLEELQKRFI-LNLPTFSVRIIDKNG-IHDLDNIS  195 (199)
T ss_dssp             HHHHHHHHHHHHTBC-BCCCCEEEEEEETTE-EECCCCBC
T ss_pred             HHHHHHHHHHHHhcC-CcCCceEEEEEcCCC-eEEcCCcc
Confidence            999999999999996 799999999999997 88877643

>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.8e-38  Score=262.46  Aligned_cols=185  Identities=16%  Similarity=0.220  Sum_probs=172.0

Q ss_pred             hcCCcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHH
Q psy1918          35 KQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVF  111 (251)
Q Consensus        35 ~~G~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~  111 (251)
                      .+|+|+|||+++||||||+|++.+++..   .+.+||++|++|++++++|..+|++.+.++++.+++.|++.++.++++.
T Consensus         7 ~nG~Tivai~~~dgVviaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~   86 (213)
T d1iru1_           7 FNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTG   86 (213)
T ss_dssp             CCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred             CCCcEEEEEEECCEEEEEECCccccCceeeccccCEEEEcCCCEEEEecCccchHHHHHHHHHHHHHHHHHhhCCchhHH
Confidence            5899999999999999999999998753   5789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCC-CCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcC-------
Q psy1918         112 RLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA-GPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLAD-------  183 (251)
Q Consensus       112 ~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~-gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~-------  183 (251)
                      .+++.+++.++.++    .+|++++.+++|+|.+ +|.+|.+||.|++.+++++|+|+|+.+++++|++.|+.       
T Consensus        87 ~~~~~~~~~~~~~~----~~~~~~~~~~~g~d~~~~~~l~~~d~~g~~~~~~~~a~G~g~~~a~~~l~~~~~~~~~~~~~  162 (213)
T d1iru1_          87 AIAAMLSTILYSRR----FFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVE  162 (213)
T ss_dssp             HHHHHHHHHHHTTT----TSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSSCC
T ss_pred             HHHHHHHHHHHHHH----hhhcccccceEEEecCCCcEEEecCCcceeeecCeeeecCccHHHHHHHHHhhcccchhccc
Confidence            99999999986553    3699999999999974 58999999999999999999999999999999998753       


Q ss_pred             CCCCCHHHHHHHHHHHHHhhCCCCCCCCCCeEEEEEEecCC
Q psy1918         184 FPEASLEEIVKHGLRALRDTLPNDSELTTKNVSIGLVGQNQ  224 (251)
Q Consensus       184 ~~~~s~~ea~~~~~~al~~~~~~d~~~~~~~iei~ii~~~~  224 (251)
                      .++||++||++++++||..+.++|. .++.+++|++|+++|
T Consensus       163 ~~~~s~~ea~~~~~~~l~~~~~~d~-~sg~~~~v~~i~k~G  202 (213)
T d1iru1_         163 HVPLSLDRAMRLVKDVFISAAERDV-YTGDALRICIVTKEG  202 (213)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHBT-TSCSEEEEEEEETTE
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHhcC-CCCCceEEEEEeCCC
Confidence            2689999999999999999999996 789999999999997

>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Bacillus subtilis [TaxId: 1423]

Probab=99.92  E-value=1.1e-24  Score=175.94  Aligned_cols=171  Identities=13%  Similarity=-0.026  Sum_probs=130.4

Q ss_pred             cCCcEEEeeeCCeEEEEEeccCcccc---cc-ccCceEEEcCc-EEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCH
Q psy1918          36 QGSATVGLKNKTHAVIIALKRAASEL---AA-HQKKIIVIDDH-MGLSFAGLTADARILARFMRMECLNYKYAHKDTLPV  110 (251)
Q Consensus        36 ~G~tvigi~~~dgVvla~d~~~~~~l---~~-~~~Ki~~i~~~-i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~  110 (251)
                      +|||+|||+|+||||||+|+|++++.   .+ ..+|++.++++ ++++.+|..+|.+.+.+.++.+...+.....     
T Consensus         4 ~GTTivai~~~dGVvlAaDtR~S~G~~i~~~~~~~ki~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-----   78 (180)
T d2z3ba1           4 HATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYNGNLK-----   78 (180)
T ss_dssp             CCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTTTCHH-----
T ss_pred             CCeEEEEEEECCEEEEEECCcccCCceeEecccceEEEEecccceecccchHHHHHHHHHHHHHHHHHhhccccc-----
Confidence            79999999999999999999999874   23 57899999875 7788899999999999998877665532211     


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHH
Q psy1918         111 FRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLE  190 (251)
Q Consensus       111 ~~la~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~  190 (251)
                      ..+.............+....++......+|++..++.++..++.|      +.|+|+|+.+|+++|++.|+  ++|+.+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~a~GSGs~~A~g~l~~~~~--~~~s~~  150 (180)
T d2z3ba1          79 RAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIEPDDG------ILAIGSGGNYALAAGRALKK--HAGESM  150 (180)
T ss_dssp             HHHHHHHHHHHHCTTGGGCCCCEEEECSSCEEEECTTCCEECCSSS------EEEESTTHHHHHHHHHHHHH--HHGGGC
T ss_pred             hhHHHHHHHHhHHHHHHHhhcceeeeeccccccccCCceeeccccc------EEEEcCchHHHHHHHHHHhh--cCCCcc
Confidence            1111111111111111222235556666677777777777776665      78999999999999999998  699999


Q ss_pred             HHHHHHHHHHHhhCCCCCCCCCCeEEEEEE
Q psy1918         191 EIVKHGLRALRDTLPNDSELTTKNVSIGLV  220 (251)
Q Consensus       191 ea~~~~~~al~~~~~~d~~~~~~~iei~ii  220 (251)
                      ||++++++||+.+.++|. +++++++|-+|
T Consensus       151 eA~~l~~~Al~~A~e~dv-yT~~~~~~~~i  179 (180)
T d2z3ba1         151 SASEIARAALETAGEICV-YTNDQIILEEL  179 (180)
T ss_dssp             CHHHHHHHHHHHHHHHCT-TCCSCCEEEEE
T ss_pred             CHHHHHHHHHHHHHhhcE-EcCCcEEEEEe
Confidence            999999999999999996 89999998876

>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=2e-24  Score=172.63  Aligned_cols=168  Identities=13%  Similarity=-0.031  Sum_probs=131.0

Q ss_pred             CcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEEEEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q psy1918          38 SATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI  114 (251)
Q Consensus        38 ~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~la  114 (251)
                      ||+|||+++||||||+|+|.+.+..   ++.+||++|+++++++.+|..+|.+.+......+...+...  .   .....
T Consensus         1 TTivav~~~~gVviAaDtR~S~G~~i~~r~~~Ki~~i~~~~~~~~~g~~ad~~~~~~~~~~~~~~~~~~--~---~~~~~   75 (171)
T d1m4ya_           1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGG--N---LTKAA   75 (171)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT--C---HHHHH
T ss_pred             CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEecCCcEEEEEeechhhHHHHHHHHHHHHHHhhc--c---chhhH
Confidence            6999999999999999999999853   68999999999999999999999999888777665544322  1   12222


Q ss_pred             HHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHHH
Q psy1918         115 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVK  194 (251)
Q Consensus       115 ~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~~  194 (251)
                      ...+..+..+     ..++....++.+.+.++|+++..|+.|.....++.|+|+|+.+|+++|+..+++ ++++   |.+
T Consensus        76 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~l~~~~~~-~~~~---a~e  146 (171)
T d1m4ya_          76 VELAKDWRTD-----RVLRRLEALLLVADKENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRN-TDLS---ARE  146 (171)
T ss_dssp             HHHHHHHHHC-----TTGGGCCCEEEEECSSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHH-CCCC---HHH
T ss_pred             HHHHHHHHHh-----hhhcccccccceecCCcceEEecCCceeeecCCEEEEcchHHHHHHHHHhhccC-CCCC---HHH
Confidence            2222222111     123444555556777889999999999999999999999999999999998764 5665   667


Q ss_pred             HHHHHHHhhCCCCCCCCCCeEEEEEE
Q psy1918         195 HGLRALRDTLPNDSELTTKNVSIGLV  220 (251)
Q Consensus       195 ~~~~al~~~~~~d~~~~~~~iei~ii  220 (251)
                      ++++||+.+.++|. +++++++|-.|
T Consensus       147 l~~~Ai~~A~e~dv-yTg~~~~i~~~  171 (171)
T d1m4ya_         147 IVEKAMTIAGEICI-YTNQNIVIEEV  171 (171)
T ss_dssp             HHHHHHHHHHHHCT-TCCSCCEEEEC
T ss_pred             HHHHHHHHHHhhce-EcCCcEEEEEC
Confidence            89999999999995 89999988653

>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Haemophilus influenzae [TaxId: 727]

Probab=99.88  E-value=1.2e-22  Score=162.63  Aligned_cols=168  Identities=15%  Similarity=0.049  Sum_probs=122.7

Q ss_pred             CcEEEeeeCCeEEEEEeccCccccc---cccCceEEEcCcEEE-EEeCcHHHHHHHHHHHHHHHHHHhhhcCCCCCHHHH
Q psy1918          38 SATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGL-SFAGLTADARILARFMRMECLNYKYAHKDTLPVFRL  113 (251)
Q Consensus        38 ~tvigi~~~dgVvla~d~~~~~~l~---~~~~Ki~~i~~~i~~-~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~i~~~~l  113 (251)
                      ||+|||+++||||||+|+|++.+..   ++.+||++|++++++ +.+|...+.+.+.+..+.+...+      +.+....
T Consensus         1 TTivai~~~dGVVlAaDtRaS~G~~i~~r~~~Ki~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~   74 (173)
T d1g3ka_           1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMH------QGHLLKS   74 (173)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHT------TTCHHHH
T ss_pred             CeEEEEEECCEEEEEECCCcccCCEeEcCCcceEEEecCCcEEEEeeehhHhHHHHHHHHHHHHHhh------cCcchhH
Confidence            6899999999999999999999863   688999999887555 55665555555554443332222      2222333


Q ss_pred             HHHHHHHHHHhhhcCCCCcceeeeeEEEEeCCCCeEEEECCCCCeeeeeEEEEcCChHHHHHHHHHhhcCCCCCCHHHHH
Q psy1918         114 ISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIV  193 (251)
Q Consensus       114 a~~l~~~~~~yt~~~~~rP~~v~~iv~G~d~~gp~ly~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~~~~s~~ea~  193 (251)
                      +..++..+  +..  ...+.....++++.++++|.++..|+.|.+.+..+.|+|+|+.+|++.|+.+++    ++.+||.
T Consensus        75 ~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~GSGs~~A~~~l~~~~~----~~~~~A~  146 (173)
T d1g3ka_          75 AVELAKDW--RTD--RALRKLEAMLIVADEKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVE----NTELSAH  146 (173)
T ss_dssp             HHHHHHHH--HHS--TTGGGCCCEEEEECSSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHH----HCCCCHH
T ss_pred             HHHHHHHH--HHh--hhhcccccccccccCCCcceecccCceEEecCCCEEEecchHHHHHHHHHHhhh----cCCCCHH
Confidence            33333333  221  123444455555555677999999999999999999999999999999998875    3445688


Q ss_pred             HHHHHHHHhhCCCCCCCCCCeEEEEEE
Q psy1918         194 KHGLRALRDTLPNDSELTTKNVSIGLV  220 (251)
Q Consensus       194 ~~~~~al~~~~~~d~~~~~~~iei~ii  220 (251)
                      +++++||+.|.++|. +++++++|-.|
T Consensus       147 ela~~Ai~~Aae~dv-yTgd~~~i~~~  172 (173)
T d1g3ka_         147 EIVEKSLRIAGDICV-FTNTNFTIEEL  172 (173)
T ss_dssp             HHHHHHHHHHHHHCT-TCCSCCEEEEE
T ss_pred             HHHHHHHHHHHhhcE-EcCCcEEEEEC
Confidence            899999999999995 89999988765