Psyllid ID: psy194

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-----
Protein Sequence
MWKAAAGSGVAPVVANQDDDDWETDPDFINDVSEQEQRWGSKTIPGSGRTGGTIDMKQLREEVAISDACYKQKQLEEGSKASYGYGGKFGVEKDRMDESAVGHDYVAQLHQHESQSDYKTGFGGKFGVQNDRVDKSAVTWDHKEVIEKHASQKDYSSGFGGKFGVQKDRQDKSAVGWDHQEKIEKHESQKDYAKGFGGKFGIESDRQDKSAVGWDHVEKVDKHQSQKDDNRQVVTSSKVKDLIAANSTNASKENIKPKPNIGHVKPSNLRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKKLNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQERLMEELRQQGTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEccccccccccccccccccEEEEccccccccEEEEccccccccccccEEEcc
Secondary Structure Prediction (SSPRO)
ccHHHccccEEEEccccccccccccccccccccHHHHcccccEEcccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHcccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccHccccccccEcccccccccccccHHccccHccccccccccccccccccccHHHHcccccHccccccccHccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccHHHHHHHHHccccHHHHcccccccccccccHcccccccccccccccccccccccccccccHHcHHHccccccccccccccccccccccccccccEEEEEcccEccccccEccEccccEEEEEEcccccEEEEEEccEEEEEEHHHEEEcc
Coil and Loop (DISEMBL)
mwkaaagsgvapvvanqddddwetdpdfiNDVSEQeqrwgsktipgsgrtggtidmKQLREEVAISDACYKqkqleegskasygyggkfgvekdrmdesavghDYVAQLhqhesqsdyktgfggkfgvqndrvdksavtwDHKEVIEkhasqkdyssgfggkfgvqkdrqdksavgwdhqekiekhesQKDYAkgfggkfgiesdrqdksavgwdhvekvdkhqsqkddnrqvvTSSKVKDLIAAnstnaskenikpkpnighvkpsnlRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKKlnghsdvplspstetppvpvksilkqptsdgipiqnsnkeEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQERLMEELRQqgtnedteedLGYTAVALYDYqasaddeisfdpddiitniemidegwwrgychgqyglfpanyvslqq
Flexible Loop (DISEMBL)
mwkaaagsgvapvvanqddddwETDPDFINDVseqeqrwgsktipgsgrtggtiDMKQLREEVAISDACYKQKqleegskasygygGKFGVEKDRMDESAVGHDYVAQLHQHESQSDYKTGFGGKFGVQNDRVDKSAVTWDHKEViekhasqkdyssgfgGKFGVQKDRQDKSAVGWDhqekiekhesqkdyAKGFGGKFGIESDRQDKSAVGWDHVEkvdkhqsqkddnrqvvtsskvKDLIAanstnaskenikpkpnighvkpsnlrAKFEnlakqteeesrkrseeekekrklkdqidleqaqkleerrlselkikeeeiekklnghsdvplspstetppVPVKsilkqptsdgipiqnsnkeeeekekQRMVQEeikrkelerkeelekeqirikeeqenikkkkeqeekerkeqEENQKlllkkqqeedRLKAEEQARLLEQERLMEELRqqgtnedteedLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQQ
Low Complexity Region (SEG)
MWKaaagsgvapvvaNQDDDDWETDPDFINDVSEQEQRWGSKTIPGSGRTGGTIDMKQLREEVAISDACYKQKQLEEGSKASYGYGGKFGVEKDRMDESAVGHDYVAQLHQHESQSDYKTGFGGKFGVQNDRVDKSAVTWDHKEVIEKHASQKDYSSGFGGKFGVQKDRQDKSAVGWDHQEKIEKHESQKDYAKGFGGKFGIESDRQDKSAVGWDHVEKVDKHQSQKDDNRQVVTSSKVKDLIAANSTNASKENIKPKPNIGHVKPSNLRAKFENLAKQTeeesrkrseeekekrkLKDQIDLEQAQkleerrlselkikeeeiekklNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNkeeeekekQRMVqeeikrkelerkeelekeqirikeeqenikkkkeqeekerkeqeenqklllkkqqeeDrlkaeeqarlleqerlmeelrqqGTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQQ
Disordered region (IsUnstruct)
***************************************************************AISDACY*************GYGGKF**************DYVA************TGFGGKFGVQNDRVDKSAVTWDHKEVI*********************************************************************************************************************************************************************************************************************************************************************************************************************************LGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV****
Disordered Region (DISOPRED)
*WK****S***********DDWETDPDFINDVSEQE******************DMKQLR**************************GKFGVEKDRMD****************************FGVQNDRVDKSAVTWD****************GFGGKFGVQKDR*****************************************************************************************************************************************************************************************************************************************************************************************************DTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQQ
Disordered Region (DISEMBL)
***********PVVANQDDDDWETDPDFINDVSEQEQRWGSKTIPGSGRTGGTIDMKQLREEVAISDACYKQKQLEEGSKASYGYGGKFGVEKDRMDESAVGHDYVAQLHQHESQSDYKTGFGGKFGVQNDRVDKSAVTWDHKEVIEKHASQKDYSSGFGGKFGVQKDRQDKSAVGWDHQEKIEKHESQKDYAKGFGGKFGIESDRQDKSAVGWDHVE****************TSSKVKDLIAANSTNASKENIKPKPNIGHVKPSNLRAKFENL**********************DQIDLEQAQKLEERRLSELKIKEEEIEKKLNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNS*************QEEIKRKELERKEELEKEQIRIKEEQENI*****************QKLLLKKQQEEDRLKAEEQARLLEQERLMEELRQQGTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQQ
Disordered Region (DISPRO)
*****************DDDDWETDPDFINDVSEQEQRWGSKTIPGSGRTGGTIDMKQLREEVAISDACYKQKQLEEGS**S****GK*GVEKDRMDESA*****V*QLHQHESQSDYKTGFGGKFGVQN***********************DY*SGFGGKFGVQKDRQ*KSAVG*DHQEKIEKHESQKDYAKGFGGKFGIESD*****************************************************************************************************************************************************************************E**************************************************************************************EDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQQ
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWKAAAGSGVAPVVANQDDDDWETDPDFINDVSEQEQRWGSKTIPGSGRTGGTIDMKQLREEVAISDACYKQKQLEEGSKASYGYGGKFGVEKDRMDESAVGHDYVAQLHQHESQSDYKTGFGGKFGVQNDRVDKSAVTWDHKEVIEKHASQKDYSSGFGGKFGVQKDRQDKSAVGWDHQEKIEKHESQKDYAKGFGGKFGIESDRQDKSAVGWDHVEKVDKHQSQKDDNRQVVTSSKVKDLIAANSTNASKENIKPKPNIGHVKPSNLRAKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	525	2.2.26 [Sep-21-2011]
Q60598	546	Src substrate cortactin O	yes	N/A	0.971	0.934	0.424	1e-107
Q14247	550	Src substrate cortactin O	no	N/A	0.975	0.930	0.420	1e-105
P14317	486	Hematopoietic lineage cel	no	N/A	0.902	0.975	0.405	3e-95
Q01406	563	Src substrate protein p85	yes	N/A	0.942	0.879	0.375	8e-85
P49710	486	Hematopoietic lineage cel	no	N/A	0.468	0.506	0.527	7e-74
Q6GM14	376	Drebrin-like protein B OS	N/A	N/A	0.249	0.348	0.402	9e-19
Q7ZXQ9	447	Drebrin-like protein A OS	N/A	N/A	0.116	0.136	0.645	4e-18
Q9JHL4	436	Drebrin-like protein OS=R	no	N/A	0.146	0.176	0.544	3e-17
Q62418	436	Drebrin-like protein OS=M	no	N/A	0.146	0.176	0.511	4e-17
Q9UJU6	430	Drebrin-like protein OS=H	no	N/A	0.104	0.127	0.678	5e-17

>sp|Q60598|SRC8_MOUSE Src substrate cortactin OS=Mus musculus GN=Cttn PE=1 SV=2

 Score =  388 bits (996), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 238/561 (42%), Positives = 330/561 (58%), Gaps = 51/561 (9%)

Query: 1   MWKAAAGSGVAPVVANQDDDDWETDPDFINDVSEQEQRWGSKTIPGSGRTGGTIDMKQLR 60
           MWKA+AG  V+    +   DDWETDPDF+NDVSE+EQRWG+KT+ GSG     I++ +LR
Sbjct: 1   MWKASAGHAVSITQDDGGADDWETDPDFVNDVSEKEQRWGAKTVQGSGHQE-HINIHKLR 59

Query: 61  EEVAISDACYKQKQLEEGSKASYGYGGKFGVEKDRMDESAVGHDYVAQLHQHESQSDYKT 120
           E V       K+K+LE G KAS+GYGGKFGVE+DRMD SAVGH+Y ++L +H SQ D   
Sbjct: 60  ENVFQEHQTLKEKELETGPKASHGYGGKFGVEQDRMDRSAVGHEYQSKLSKHCSQVDSVR 119

Query: 121 GFGGKFGVQNDRVDKSAVTWDHKEVIEKHASQKDYSSGFGGKFGVQKDRQDKSAVGWDHQ 180
           GFGGKFGVQ DRVD+SAV ++++   EKHASQKDYSSGFGGK+GVQ DR DKSAVG+D+Q
Sbjct: 120 GFGGKFGVQMDRVDQSAVGFEYQGKTEKHASQKDYSSGFGGKYGVQADRVDKSAVGFDYQ 179

Query: 181 EKIEKHESQKDYAKGFGGKFGIESDRQDKSAVGWDHVEKVDKHQSQKDDNRQVVTSSKV- 239
            K EKHESQKDY+KGFGGK+GI+ D+ DKSAVG+++  K +KH+SQKD  +       V 
Sbjct: 180 GKTEKHESQKDYSKGFGGKYGIDKDKVDKSAVGFEYQGKTEKHESQKDYVKGFGGKFGVQ 239

Query: 240 ---KDLIAANSTNASKENIKPKPNIGHVKPSNLRAKFEN-LAKQTEEESRKRSEEEKEKR 295
              +D  A    +  K  +       H    + +  F      Q+E +       + ++R
Sbjct: 240 TDRQDKCALGWDHQEKLQL-------HESQKDYKTGFGGKFGVQSERQDSSAVGFDYKER 292

Query: 296 KLKDQIDLEQAQKLEERRLSELKIKEEEIEKKLNGHSDVPLSPSTETPPVPVKSILKQPT 355
             K +   + A+        +  ++++ ++K  +   +V   PS     VP++++  + +
Sbjct: 293 LAKHESQQDYAKGFG----GKYGVQKDRMDKNASTFEEVVQVPSAYQKTVPIEAVTSKTS 348

Query: 356 SDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEK 415
           +     +N  KE E++++++   E  +R   ER+E+   E+ R K E++   KK+     
Sbjct: 349 NIRANFENLAKEREQEDRRKAEAERAQRMAKERQEQ---EEARRKLEEQARAKKQTPPAS 405

Query: 416 ERKEQEENQKLLLKKQQEEDRLKAEEQAR--------LLEQERLMEELRQQG-------- 459
              +  E++       ++    KAE   R         +E   + E   QQG        
Sbjct: 406 PSPQPIEDRPPSSPIYEDAAPFKAEPSYRGSEPEPEYSIEAAGIPEAGSQQGLTYTSEPV 465

Query: 460 ---------------TNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGW 504
                          T +  E DLG TA+ALYDYQA+ DDEISFDPDDIITNIEMID+GW
Sbjct: 466 YETTEAPGHYQAEDDTYDGYESDLGITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGW 525

Query: 505 WRGYCHGQYGLFPANYVSLQQ 525
           WRG C G+YGLFPANYV L+Q
Sbjct: 526 WRGVCKGRYGLFPANYVELRQ 546

Contributes to the organization of the actin cytoskeleton and cell structure. Plays a role in the regulation of cell migration. Plays a role in the invasiveness of cancer cells, and the formation of metastases.
Mus musculus (taxid: 10090)

>sp|Q14247|SRC8_HUMAN Src substrate cortactin OS=Homo sapiens GN=CTTN PE=1 SV=2

 Score =  384 bits (986), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 237/563 (42%), Positives = 333/563 (59%), Gaps = 51/563 (9%)

Query: 1   MWKAAAGSGVAPVVANQDDDDWETDPDFINDVSEQEQRWGSKTIPGSGRTGGTIDMKQLR 60
           MWKA+AG  V+    +   DDWETDPDF+NDVSE+EQRWG+KT+ GSG     I++ +LR
Sbjct: 1   MWKASAGHAVSIAQDDAGADDWETDPDFVNDVSEKEQRWGAKTVQGSGHQE-HINIHKLR 59

Query: 61  EEVAISDACYKQKQLEEGSKASYGYGGKFGVEKDRMDESAVGHDYVAQLHQHESQSDYKT 120
           E V       K+K+LE G KAS+GYGGKFGVE+DRMD+SAVGH+Y ++L +H SQ D   
Sbjct: 60  ENVFQEHQTLKEKELETGPKASHGYGGKFGVEQDRMDKSAVGHEYQSKLSKHCSQVDSVR 119

Query: 121 GFGGKFGVQNDRVDKSAVTWDHKEVIEKHASQKDYSSGFGGKFGVQKDRQDKSAVGWDHQ 180
           GFGGKFGVQ DRVD+SAV ++++   EKHASQKDYSSGFGGK+GVQ DR DKSAVG+D+Q
Sbjct: 120 GFGGKFGVQMDRVDQSAVGFEYQGKTEKHASQKDYSSGFGGKYGVQADRVDKSAVGFDYQ 179

Query: 181 EKIEKHESQKDYAKGFGGKFGIESDRQDKSAVGWDHVEKVDKHQSQKDDNRQVVTSSKV- 239
            K EKHESQ+DY+KGFGGK+GI+ D+ DKSAVG+++  K +KH+SQKD  +       V 
Sbjct: 180 GKTEKHESQRDYSKGFGGKYGIDKDKVDKSAVGFEYQGKTEKHESQKDYVKGFGGKFGVQ 239

Query: 240 ---KDLIAANSTNASKENIKPKPNIGHVKPSNLRAKFEN-LAKQTEEESRKRSEEEKEKR 295
              +D  A    +  K  +       H    + +  F      Q+E     R +      
Sbjct: 240 TDRQDKCALGWDHQEKLQL-------HESQKDYKTGFGGKFGVQSE-----RQDSAAVGF 287

Query: 296 KLKDQIDLEQAQKLEERRL-SELKIKEEEIEKKLNGHSDVPLSPSTETPPVPVKSILKQP 354
             K+++   ++Q+   +    +  ++++ ++K  +   DV    S     VPV+++  + 
Sbjct: 288 DYKEKLAKHESQQDYSKGFGGKYGVQKDRMDKNASTFEDVTQVSSAYQKTVPVEAVTSKT 347

Query: 355 TSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELE-----KEQIRIKEE------- 402
           ++     +N  KE+E++++++   E  +R   ER+E+ E     +EQ R K +       
Sbjct: 348 SNIRANFENLAKEKEQEDRRKAEAERAQRMAKERQEQEEARRKLEEQARAKTQTPPVSPA 407

Query: 403 ----QENIKKKKEQEEKERKEQEENQKLLLKKQQEED---------RLKAEEQARLLEQE 449
               +E +      E+    + E + +  +   + E          R  + +Q      E
Sbjct: 408 PQPTEERLPSSPVYEDAASFKAELSYRGPVSGTEPEPVYSMEAADYREASSQQGLAYATE 467

Query: 450 RLMEELRQQG-------TNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDE 502
            + E     G       T ++ E DLG TAVALYDYQA+ DDEISFDPDDIITNIEMID+
Sbjct: 468 AVYESAEAPGHYPAEDSTYDEYENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDD 527

Query: 503 GWWRGYCHGQYGLFPANYVSLQQ 525
           GWWRG C G+YGLFPANYV L+Q
Sbjct: 528 GWWRGVCKGRYGLFPANYVELRQ 550

Contributes to the organization of the actin cytoskeleton and cell structure. Plays a role in the regulation of cell migration. Plays a role in the invasiveness of cancer cells, and the formation of metastases.

Homo sapiens (taxid: 9606)

>sp|P14317|HCLS1_HUMAN Hematopoietic lineage cell-specific protein OS=Homo sapiens GN=HCLS1 PE=1 SV=3

 Score =  349 bits (895), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 216/533 (40%), Positives = 310/533 (58%), Gaps = 59/533 (11%)

Query: 1   MWKAAAGSGVAPVVANQDDDDWETDPDFINDVSEQEQRWGSKTIPGSGRTGGTIDMKQLR 60
           MWK+  G  V+  V  Q DD W+TDPDF+ND+SE+EQRWG+KTI GSGRT   I++ QLR
Sbjct: 1   MWKSVVGHDVSVSVETQGDD-WDTDPDFVNDISEKEQRWGAKTIEGSGRTE-HINIHQLR 58

Query: 61  EEVAISDACYKQKQLEEGSKASYGYGGKFGVEKDRMDESAVGHDYVAQLHQHESQSDYKT 120
            +V+      ++K++E G KAS+GYGG+FGVE+DRMD+SAVGH+YVA++ +H SQ+D   
Sbjct: 59  NKVSEEHDVLRKKEMESGPKASHGYGGRFGVERDRMDKSAVGHEYVAEVEKHSSQTDAAK 118

Query: 121 GFGGKFGVQNDRVDKSAVTWDHKEVIEKHASQKDYSSGFGGKFGVQKDRQDKSAVGWDHQ 180
           GFGGK+GV+ DR DKSAV +D+K  +EKH SQKDYS GFGG++GV+KD+ DK+A+G+D++
Sbjct: 119 GFGGKYGVERDRADKSAVGFDYKGEVEKHTSQKDYSRGFGGRYGVEKDKWDKAALGYDYK 178

Query: 181 EKIEKHESQKDYAKGFGGKFGIESDRQDKSAVGWDHVEKVDKHQSQKDDNRQVVTSSKVK 240
            + EKHESQ+DYAKGFGG++GI+ DR DKSAVG++ +E                T+ K  
Sbjct: 179 GETEKHESQRDYAKGFGGQYGIQKDRVDKSAVGFNEMEA-------------PTTAYKKT 225

Query: 241 DLIAANSTNASKENIKPKPNIGHVKPSNLRAKFENLAKQTEEESRKRSEEEKEKRKLKDQ 300
             I A S+                    L+AKFE++A++  +   +   ++  +R     
Sbjct: 226 TPIEAASSGT----------------RGLKAKFESMAEEKRKREEEEKAQQVARR----- 264

Query: 301 IDLEQAQKLEERRLSE-----LKIKEEEIEKKLNGHSDVPLSPSTETPPV----PVKSIL 351
              +Q +K   +R  E     + ++E  +   L         P   TPP     PV++  
Sbjct: 265 ---QQERKAVTKRSPEAPQPVIAMEEPAVPAPLPKKISSEAWPPVGTPPSSESEPVRTSR 321

Query: 352 KQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKE 411
           + P    +PI+ +  E+ E E   +    ++  ++E +   E E     E +   +   E
Sbjct: 322 EHPVPL-LPIRQTLPEDNE-EPPALPPRTLEGLQVEEEPVYEAEPEPEPEPEPEPENDYE 379

Query: 412 Q-EEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQERLMEELRQQGTNEDTEEDLGY 470
             EE +R EQE+       +   E+ L+ E+ +       L                LG 
Sbjct: 380 DVEEMDRHEQEDE-----PEGDYEEVLEPEDSSF---SSALAGSSGCPAGAGAGAVALGI 431

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           +AVA+YDYQ    DE+SFDPDD+IT+IEM+DEGWWRG CHG +GLFPANYV L
Sbjct: 432 SAVAVYDYQGEGSDELSFDPDDVITDIEMVDEGWWRGRCHGHFGLFPANYVKL 484

Substrate of the antigen receptor-coupled tyrosine kinase. Plays a role in antigen receptor signaling for both clonal expansion and deletion in lymphoid cells. May also be involved in the regulation of gene expression.

Homo sapiens (taxid: 9606)

>sp|Q01406|SRC8_CHICK Src substrate protein p85 OS=Gallus gallus GN=CTTN1 PE=1 SV=1

 Score =  315 bits (806), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 219/583 (37%), Positives = 313/583 (53%), Gaps = 88/583 (15%)

Query: 1   MWKAAAGSGVAPVVANQDD--DDWETDPDFINDVSEQEQRWGSKTIPGSGRTGGTIDMKQ 58
           MWKA AG  +A    +QDD  DDWETDPDF+NDVSE+EQRWG+KT+ GSG     I++ Q
Sbjct: 11  MWKATAGHSIA---VSQDDGADDWETDPDFVNDVSEKEQRWGAKTVKGSGHQE-HINIHQ 66

Query: 59  LREEVAISDACYKQKQLEEGSKASYGYGGKFGVEKDRMDESAVGHDYVAQLHQHESQSDY 118
           LRE V       K+K+LE G KAS+GYGGKFGVE+DRMD+SAVGH+Y ++L +H SQ D 
Sbjct: 67  LRENVFQEHQTIKEKELETGPKASHGYGGKFGVEQDRMDKSAVGHEYQSKLSKHCSQVDS 126

Query: 119 KTGFGGKFGVQNDRVDKSAVTWDHKEVIEKHASQKDYSSGFGGKFGVQKDRQDKSAVGWD 178
             GFGGKFGVQ DRVD+SAV ++++   EKHASQKDYSSGFGGK+GVQ DR DKSAVG+D
Sbjct: 127 VKGFGGKFGVQTDRVDQSAVGFEYQGKTEKHASQKDYSSGFGGKYGVQADRVDKSAVGFD 186

Query: 179 HQEKIEKHESQKDYAKGFGGKFGIESDRQDKSAVGWDHVEKVDKHQSQKDDNRQVVTSSK 238
           +Q K EKHESQKDY+KGFGGK+G++ D+ DKSAVG+++  K +KH+SQKD  +       
Sbjct: 187 YQGKTEKHESQKDYSKGFGGKYGVDKDKVDKSAVGFEYQGKTEKHESQKDYVKGFGGKFG 246

Query: 239 V----KDLIAANSTNASKENIKPKPNIGHVKPSNLRAKFEN-LAKQTEEESRKRSEEEKE 293
           V    +D  A    +  K  +       H    + ++ F      QTE     R +    
Sbjct: 247 VQTDRQDKCALGWDHQEKVQL-------HESQKDYKSGFGGKFGVQTE-----RQDPSAV 294

Query: 294 KRKLKDQIDLEQAQKLEERRL-SELKIKEEEIEKKLNGHSDVPLSPSTETPPVPVKSILK 352
               K+++   ++Q+   +    +  ++++ ++K      D+    ST     PV+ +  
Sbjct: 295 GFDYKEKLAKHESQQDYSKGFGGKYGVQKDRMDKNAATFEDIEKPTSTYQKTKPVERVAN 354

Query: 353 QPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQ 412
           + +S    ++N  KE+E        QE+ ++ E ER + + +E    K+EQE  ++K E+
Sbjct: 355 KTSSIRANLENLAKEKE--------QEDRRKAEAERAQRMARE----KQEQEEARRKLEE 402

Query: 413 EEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQERLMEELRQQGTNEDTEEDLGYTA 472
           + K +K+           + +       + A   + E   +      + E  E + GY  
Sbjct: 403 QAKAKKQTPPPSPTTQPAEPKTPSSPVYQDAVSYDAESAYKNSSTTYSAEH-EPESGYKT 461

Query: 473 VALYDYQ-ASADDEISFDPDDI-------------------------ITNIEMID----- 501
               DYQ A +  E  ++P+ +                         IT I + D     
Sbjct: 462 TGS-DYQEAVSQREAEYEPETVYEVAGAGDHYQAEENTYDEYENELGITAIALYDYQAAG 520

Query: 502 -------------------EGWWRGYCHGQYGLFPANYVSLQQ 525
                              +GWWRG C G+YGLFPANYV L+Q
Sbjct: 521 DDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQ 563

Contributes to the organization of the actin cytoskeleton and cell structure. Plays a role in the regulation of cell migration.

Gallus gallus (taxid: 9031)

>sp|P49710|HCLS1_MOUSE Hematopoietic lineage cell-specific protein OS=Mus musculus GN=Hcls1 PE=1 SV=2

 Score =  278 bits (712), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 146/277 (52%), Positives = 194/277 (70%), Gaps = 31/277 (11%)

Query: 1   MWKAAAGSGVAPVVANQDDDDWETDPDFINDVSEQEQRWGSKTIPGSGRTGGTIDMKQLR 60
           MWK+  G  V+  V  Q DD W+TDPDF+ND+SE+EQRWG+KTI GSGRT   I++ QLR
Sbjct: 1   MWKSVVGHDVSVSVETQGDD-WDTDPDFVNDISEKEQRWGAKTIEGSGRTE-HINIHQLR 58

Query: 61  EEVAISDACYKQKQLEEGSKASYGYGGKFGVEKDRMDESAVGHDYVAQLHQHESQSDYKT 120
            +V+      K+K+LE G KAS+GYGG+FGVE+DRMD+SAVGH+YVA + +H SQ+D   
Sbjct: 59  NKVSEEHDILKKKELESGPKASHGYGGRFGVERDRMDKSAVGHEYVADVEKHSSQTDAAR 118

Query: 121 GFGGKFGVQNDRVDKSAVTWDHKEVIEKHASQKDYSSGFGGKFGVQKDRQDKSAVGWDHQ 180
           GFGGK+GV+ DR DKSAV +D+K  +EKHASQKDYS GFGG++GV+KD++DK+A+G+D++
Sbjct: 119 GFGGKYGVERDRADKSAVGFDYKGEVEKHASQKDYSHGFGGRYGVEKDKRDKAALGYDYK 178

Query: 181 EKIEKHESQKDYAKGFGGKFGIESDRQDKSAVGWDHVEKVDKHQSQKDDNRQVVTSSKVK 240
            + EKHESQ+DYAKGFGG++GI+ DR DKSAVG++ +E                T+ K  
Sbjct: 179 GETEKHESQRDYAKGFGGQYGIQKDRVDKSAVGFNEMEA-------------PTTAYKKT 225

Query: 241 DLIAANSTNASKENIKPKPNIGHVKPSNLRAKFENLA 277
             I A S+ A                  L+AKFE+LA
Sbjct: 226 TPIEAASSGA----------------RGLKAKFESLA 246

Substrate of the antigen receptor-coupled tyrosine kinase. Plays a role in antigen receptor signaling for both clonal expansion and deletion in lymphoid cells. May also be involved in the regulation of gene expression.

Mus musculus (taxid: 10090)

>sp|Q6GM14|DBNLB_XENLA Drebrin-like protein B OS=Xenopus laevis GN=dbnl-b PE=2 SV=1

 Score = 95.5 bits (236), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 58/144 (40%), Positives = 81/144 (56%), Gaps = 13/144 (9%)

Query: 388 RKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQ-----KLLLKKQQEEDRLK--AE 440
           ++EE+EK+Q  +   Q ++  ++   +KER   E        +     QQEE+ +   A 
Sbjct: 236 QQEEVEKQQT-VPASQRSVNPREMFLQKERSLPESGSVSAQPEQFTASQQEEENIYQDAT 294

Query: 441 EQARLLEQERLMEELRQQGTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMI 500
           E   + E     + + + G  ED+    G  A ALYDYQA+ D EISFDPDD+I  IEMI
Sbjct: 295 ENQNIYEDTPQEDPVYETGVAEDS----GMCARALYDYQAADDTEISFDPDDVIIQIEMI 350

Query: 501 DEGWWRGYC-HGQYGLFPANYVSL 523
           D+GWWRG    G +G+FPANYV L
Sbjct: 351 DDGWWRGVAPSGHFGMFPANYVEL 374

Actin-binding adapter protein. Binds to F-actin but is not involved in actin polymerization, capping or bundling. Does not bind G-actin.

Xenopus laevis (taxid: 8355)

>sp|Q7ZXQ9|DBNLA_XENLA Drebrin-like protein A OS=Xenopus laevis GN=dbnl-a PE=2 SV=1

 Score = 93.2 bits (230), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 40/62 (64%), Positives = 48/62 (77%), Gaps = 1/62 (1%)

Query: 463 DTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC-HGQYGLFPANYV 521
           + EE+ G  A ALYDYQA+ D EISFDPDD+IT I+ IDEGWWRG+   G +G+FPANYV
Sbjct: 384 EVEEEKGVCARALYDYQAADDTEISFDPDDLITQIQFIDEGWWRGFSPAGHFGMFPANYV 443

Query: 522 SL 523
            L
Sbjct: 444 EL 445

Actin-binding adapter protein. Binds to F-actin but is not involved in actin polymerization, capping or bundling. Does not bind G-actin.

Xenopus laevis (taxid: 8355)

>sp|Q9JHL4|DBNL_RAT Drebrin-like protein OS=Rattus norvegicus GN=Dbnl PE=1 SV=1

 Score = 90.5 bits (223), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 49/90 (54%), Positives = 59/90 (65%), Gaps = 13/90 (14%)

Query: 447 EQERLMEE---LRQQGT------NEDTEEDL---GYTAVALYDYQASADDEISFDPDDII 494
           EQE L EE   ++Q G       N    +DL   G  A ALYDYQA+ D EISFDP+++I
Sbjct: 345 EQETLYEEPPPVQQPGAGSGHIDNYMQSQDLSGQGLCARALYDYQAADDTEISFDPENLI 404

Query: 495 TNIEMIDEGWWRGYCH-GQYGLFPANYVSL 523
           T IE+IDEGWWRGY   G +G+FPANYV L
Sbjct: 405 TGIEVIDEGWWRGYGPDGHFGMFPANYVEL 434

Actin-binding adapter protein. May act as a common effector of antigen receptor-signaling pathways in leukocytes. Its association with dynamin suggests that it may also connect the actin cytoskeleton to endocytic function. Acts as a key component of the immunological synapse that regulates T-cell activation by bridging TCRs and the actin cytoskeleton to gene activation and endocytic processes. Binds to F-actin but is not involved in actin polymerization, capping or bundling. Does not bind G-actin.

Rattus norvegicus (taxid: 10116)

>sp|Q62418|DBNL_MOUSE Drebrin-like protein OS=Mus musculus GN=Dbnl PE=1 SV=2

 Score = 89.7 bits (221), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 46/90 (51%), Positives = 59/90 (65%), Gaps = 13/90 (14%)

Query: 447 EQERLMEE---LRQQGTNEDTEEDL---------GYTAVALYDYQASADDEISFDPDDII 494
           EQ+ L EE   ++QQG   +  ++          G  A ALYDYQA+ D EISFDP+++I
Sbjct: 345 EQDTLYEEPPLVQQQGAGSEHIDNYMQSQGFSGQGLCARALYDYQAADDTEISFDPENLI 404

Query: 495 TNIEMIDEGWWRGYCH-GQYGLFPANYVSL 523
           T IE+IDEGWWRGY   G +G+FPANYV L
Sbjct: 405 TGIEVIDEGWWRGYGPDGHFGMFPANYVEL 434

Actin-binding adapter protein. May act as a common effector of antigen receptor-signaling pathways in leukocytes. Its association with dynamin suggests that it may also connect the actin cytoskeleton to endocytic function. Acts as a key component of the immunological synapse that regulates T-cell activation by bridging TCRs and the actin cytoskeleton to gene activation and endocytic processes. Binds to F-actin but is not involved in actin polymerization, capping or bundling. Does not bind G-actin.

Mus musculus (taxid: 10090)

>sp|Q9UJU6|DBNL_HUMAN Drebrin-like protein OS=Homo sapiens GN=DBNL PE=1 SV=1

 Score = 89.7 bits (221), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 38/56 (67%), Positives = 45/56 (80%), Gaps = 1/56 (1%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH-GQYGLFPANYVSL 523
           G  A ALYDYQA+ D EISFDP+++IT IE+IDEGWWRGY   G +G+FPANYV L
Sbjct: 373 GLCARALYDYQAADDTEISFDPENLITGIEVIDEGWWRGYGPDGHFGMFPANYVEL 428

Actin-binding adapter protein. May act as a common effector of antigen receptor-signaling pathways in leukocytes. Its association with dynamin suggests that it may also connect the actin cytoskeleton to endocytic function. Acts as a key component of the immunological synapse that regulates T-cell activation by bridging TCRs and the actin cytoskeleton to gene activation and endocytic processes. Binds to F-actin but is not involved in actin polymerization, capping or bundling. Does not bind G-actin.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	525
193636713	629	PREDICTED: src substrate cortactin-like	0.992	0.828	0.481	1e-142
195355600	549	GM15108 [Drosophila sechellia] gi|194129	0.942	0.901	0.486	1e-126
195569281	549	GD20012 [Drosophila simulans] gi|1941985	0.942	0.901	0.486	1e-126
195112028	553	GI10305 [Drosophila mojavensis] gi|19391	0.937	0.889	0.473	1e-125
194899600	555	GG14937 [Drosophila erecta] gi|190651050	0.937	0.886	0.464	1e-123
347972305	525	AGAP004625-PA [Anopheles gambiae str. PE	0.948	0.948	0.472	1e-122
3869204	559	Cortactin [Drosophila melanogaster] gi|9	0.940	0.883	0.463	1e-120
24648611	559	cortactin, isoform A [Drosophila melanog	0.942	0.885	0.458	1e-120
387015284	513	Cortactin [Crotalus adamanteus]	0.887	0.908	0.447	1e-113
194744919	548	GF18522 [Drosophila ananassae] gi|190627	0.939	0.899	0.441	1e-111

>gi|193636713|ref|XP_001949730.1| PREDICTED: src substrate cortactin-like [Acyrthosiphon pisum]

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 303/629 (48%), Positives = 404/629 (64%), Gaps = 108/629 (17%)

Query: 1   MWKAAAGSGVAPVVANQDDDDWETDPDFINDVSEQEQRWGSKTIPGSGRTGGTIDMKQLR 60
           MWK++AG  V   V N DDD WETDPDF+NDVSE+EQRWGS+T+PGSGR    +DM QLR
Sbjct: 1   MWKSSAGVNVEIPVENADDD-WETDPDFVNDVSEEEQRWGSRTVPGSGRVLDHVDMSQLR 59

Query: 61  EEVAISDACYKQKQLEEGSKASYGYGGKFGVEKDRMDESAVGHDYVAQLHQHESQSDYKT 120
           EEV  +    K+K++EEG +A++GYGGKFGV+ DRMD+SAVGHDY+A   +H SQ+DY +
Sbjct: 60  EEVTKAHEVLKKKEMEEGPQAAFGYGGKFGVQSDRMDKSAVGHDYIAPHFKHASQTDYSS 119

Query: 121 GFGGKFGVQNDRVDKSAVTWDHKEVIEKHASQKDYSSGFGGKFGVQKDRQDKSAVGWDHQ 180
           GFGGK+GVQ+DR+DKSAV+W HKE +EKH SQKDYSSGFGGKFGVQ DRQDKSAVGWD+ 
Sbjct: 120 GFGGKYGVQSDRIDKSAVSWSHKEKVEKHGSQKDYSSGFGGKFGVQADRQDKSAVGWDYV 179

Query: 181 EKIEKHESQKDYAKGFGGKFGIESDRQDKSAVGWDHVEKVDKHQSQKDDNRQVVTSSKVK 240
           EK++KHESQKDYA GFGGKFG++SDRQDKSAVGWD VE V+KHQSQ D ++       ++
Sbjct: 180 EKLQKHESQKDYAVGFGGKFGVQSDRQDKSAVGWDSVETVEKHQSQIDHSKGFGGKFGIQ 239

Query: 241 -DLI--AANSTNASKENI-----KPKPNIGHVKPSNLRAKFENLAKQTEEESRKRSEEEK 292
            D I  +A++ N S   +     K KP I  +KPS+LRAKFEN+AKQ EEE+ KR   E+
Sbjct: 240 NDRIDKSAHNYNESSGEVGTNYQKQKPEITSIKPSSLRAKFENMAKQEEEENEKRRLLEQ 299

Query: 293 EKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKKLNG----------------HSDVPL 336
           EKRK ++  + ++A++ EE+RL EL+ KEE+ +K L+G                  ++P+
Sbjct: 300 EKRKQRELQEKKEAREREEKRLKELQEKEEQKQKLLDGPEQFNKNTPITKIDSDEEELPI 359

Query: 337 SPSTETPPVPVKSI-----------LKQPTSD----------------GIPIQNSNKEEE 369
           +  +  PPV V +            LK+  +D                 I ++   KEE+
Sbjct: 360 ASESIRPPVVVGATIQSSVKNDEEALKRIAADEEERKQKEEQSRIEKENILLKQKQKEED 419

Query: 370 E--------------KEKQRMVQEEIKRKELERK--EELEKEQIRIKEEQENI------- 406
           +              +E+Q+ + EE+ +KE ERK  E+L + +++ KEEQE I       
Sbjct: 420 KINEEIKREHERIKLEEEQQKINEELLKKENERKKMEDLARVELKNKEEQEKIIEDKKKS 479

Query: 407 ----KKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQE------------- 449
               +KK E+E  ++K +EE+ K  L+++  + +L+ E   + LE+E             
Sbjct: 480 EEVTRKKLEEEAIKKKLEEESTKKKLEEEMTKKKLEEELTKKKLEEEITKLKLEEEAKKK 539

Query: 450 ---------------RLMEELRQQGTNEDTEEDLGYTAVALYDYQASADDEISFDPDDII 494
                          +L E+L+    +E+  E  GY AVALYDYQASADDEISFDPDDI+
Sbjct: 540 EEQNRLEEERQLEEQKLHEQLKNGAVSEEDPEG-GYIAVALYDYQASADDEISFDPDDIV 598

Query: 495 TNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           TNIEMID+GWWRG C GQYGLFPANYV +
Sbjct: 599 TNIEMIDKGWWRGLCKGQYGLFPANYVEI 627

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195355600|ref|XP_002044279.1| GM15108 [Drosophila sechellia] gi|194129580|gb|EDW51623.1| GM15108 [Drosophila sechellia]

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 278/572 (48%), Positives = 336/572 (58%), Gaps = 77/572 (13%)

Query: 1   MWKAAAGSGV-APVVANQDDDDWETDPDFINDVSEQEQRWGSKTIPGSGRTGGTIDMKQL 59
           MWKA+AG  + A    + +DDDWETDPDF+NDVSEQEQRWGSKTI GSGRT GTIDM +L
Sbjct: 1   MWKASAGHQIQATSAVSAEDDDWETDPDFVNDVSEQEQRWGSKTIDGSGRTAGTIDMDKL 60

Query: 60  REEVAISDACYKQKQLEEGSKASYGYGGKFGVEKDRMDESAVGHDYVAQLHQHESQSDYK 119
           REE   +D   K+KQL +   A YGYGGKFGVEKDRMD+SAVGHDY  ++ +H SQ DY 
Sbjct: 61  REETEQAD-LDKKKQLLKDQNAGYGYGGKFGVEKDRMDKSAVGHDYQGKVGKHASQKDYS 119

Query: 120 TGFGGKFGVQNDRVDKSAVTWDHKEVIEKHASQKDYSSGFGGKFGVQKDRQDKSAVGWDH 179
            GFGGKFGVQ DR DKSAV WDH E +EKHASQKDY++GFGGKFGVQ DR DKSAVGWDH
Sbjct: 120 DGFGGKFGVQEDRKDKSAVGWDHVEKVEKHASQKDYATGFGGKFGVQSDRVDKSAVGWDH 179

Query: 180 QEKIEKHESQKDYAKGFGGKFGIESDRQDKSAVGWDHVEKVDKHQSQKDDNRQVVTSSKV 239
            EK+EKHESQKDY+KGFGGKFG++ DR+DKSAVGWDH E   KH SQ D           
Sbjct: 180 IEKVEKHESQKDYSKGFGGKFGVQEDRKDKSAVGWDHKEAPQKHASQVDH---------- 229

Query: 240 KDLIAANSTNASKENIKPKPNIGHVKPSNLRAKFENLAKQTEEESRKRSEEEKEKRKLKD 299
                           K KP I   KPSNLRAKFENLAK +EEESRKR+EE+K  R+ KD
Sbjct: 230 ----------------KVKPVIEGAKPSNLRAKFENLAKNSEEESRKRAEEQKRLREAKD 273

Query: 300 QIDLEQAQKL-----EERRLSEL---KIKEEEIEKKLNGHSDVPL-------SPSTETPP 344
           + D E+A K        R  +E    K     I+    G     +       SP +ETPP
Sbjct: 274 KRDREEAAKKTVAENTPRTSTEAPPPKGSRAAIQTGRTGGIGNAISAFNQMQSPVSETPP 333

Query: 345 VPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMV---QEEI------KRKELERKEELEKE 395
              + I+  P +  + ++   KEE       +V   + EI           +   ++E E
Sbjct: 334 ARKEPIVI-PKAQPVKVEVEAKEEPTAAAASVVPAREPEIVQVAKAAAPPPDVVPQIEVE 392

Query: 396 QIRIK---EEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQERL- 451
            +      E Q  +     Q E + + Q E Q     +   E+    + QA +     L 
Sbjct: 393 TVATPPRSEPQSPVHVPTPQPEVQVQVQPEPQPQADPEPVVEEEPLYQNQAEIKAASPLP 452

Query: 452 ------MEELRQQGTN--------------EDTEEDLGYTAVALYDYQASADDEISFDPD 491
                  E + Q GT                D  ED G  A+ALYDYQA+ DDEISFDPD
Sbjct: 453 PTNGTASEAVAQSGTATVPEEAIYANSDNLADYLEDTGIHAIALYDYQAADDDEISFDPD 512

Query: 492 DIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           D+IT+IE ID+GWWRG C  +YGLFPANYV +
Sbjct: 513 DVITHIEKIDDGWWRGLCKNRYGLFPANYVQV 544

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195569281|ref|XP_002102639.1| GD20012 [Drosophila simulans] gi|194198566|gb|EDX12142.1| GD20012 [Drosophila simulans]

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 278/572 (48%), Positives = 336/572 (58%), Gaps = 77/572 (13%)

Query: 1   MWKAAAGSGV-APVVANQDDDDWETDPDFINDVSEQEQRWGSKTIPGSGRTGGTIDMKQL 59
           MWKA+AG  + A    + +DDDWETDPDF+NDVSEQEQRWGSKTI GSGRT GTIDM +L
Sbjct: 1   MWKASAGHQIQATSAISAEDDDWETDPDFVNDVSEQEQRWGSKTIDGSGRTAGTIDMDKL 60

Query: 60  REEVAISDACYKQKQLEEGSKASYGYGGKFGVEKDRMDESAVGHDYVAQLHQHESQSDYK 119
           REE   +D   K+KQL +   A YGYGGKFGVEKDRMD+SAVGHDY  ++ +H SQ DY 
Sbjct: 61  REETEQAD-LDKKKQLLKDQNAGYGYGGKFGVEKDRMDKSAVGHDYQGKVGKHASQKDYS 119

Query: 120 TGFGGKFGVQNDRVDKSAVTWDHKEVIEKHASQKDYSSGFGGKFGVQKDRQDKSAVGWDH 179
            GFGGKFGVQ DR DKSAV WDH E +EKHASQKDY++GFGGKFGVQ DR DKSAVGWDH
Sbjct: 120 DGFGGKFGVQEDRKDKSAVGWDHVEKVEKHASQKDYATGFGGKFGVQSDRVDKSAVGWDH 179

Query: 180 QEKIEKHESQKDYAKGFGGKFGIESDRQDKSAVGWDHVEKVDKHQSQKDDNRQVVTSSKV 239
            EK+EKHESQKDY+KGFGGKFG++ DR+DKSAVGWDH E   KH SQ D           
Sbjct: 180 IEKVEKHESQKDYSKGFGGKFGVQEDRKDKSAVGWDHKEAPQKHASQVDH---------- 229

Query: 240 KDLIAANSTNASKENIKPKPNIGHVKPSNLRAKFENLAKQTEEESRKRSEEEKEKRKLKD 299
                           K KP I   KPSNLRAKFENLAK +EEESRKR+EE+K  R+ KD
Sbjct: 230 ----------------KVKPVIEGAKPSNLRAKFENLAKNSEEESRKRAEEQKRLREAKD 273

Query: 300 QIDLEQAQKL-----EERRLSEL---KIKEEEIEKKLNGHSDVPL-------SPSTETPP 344
           + D E+A K        R  +E    K     I+    G     +       SP +ETPP
Sbjct: 274 KRDREEAAKKTVAENTPRTSTEAPPPKGSRAAIQTGRTGGIGNAISAFNQMQSPVSETPP 333

Query: 345 VPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMV---QEEI------KRKELERKEELEKE 395
              + I+  P +  + ++   KEE       +V   + EI           +   ++E E
Sbjct: 334 ARKEPIVI-PKAQPVKVEVEAKEEPTAAAASVVPAREPEIVQVAKAAAPPPDVVPQIEVE 392

Query: 396 QIRIK---EEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQERL- 451
            +      E Q  +     Q E + + Q E Q     +   E+    + QA +     L 
Sbjct: 393 TVATPPRSEPQSPVHVPTPQPEVQVQVQPEPQPQADPEPVVEEEPLYQNQAEIKAASPLP 452

Query: 452 ------MEELRQQGTN--------------EDTEEDLGYTAVALYDYQASADDEISFDPD 491
                  E + Q GT                D  ED G  A+ALYDYQA+ DDEISFDPD
Sbjct: 453 PTNGTASEAVAQSGTATVPEEAIYANSDNLADYLEDTGIHAIALYDYQAADDDEISFDPD 512

Query: 492 DIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           D+IT+IE ID+GWWRG C  +YGLFPANYV +
Sbjct: 513 DVITHIEKIDDGWWRGLCKNRYGLFPANYVQV 544

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195112028|ref|XP_002000578.1| GI10305 [Drosophila mojavensis] gi|193917172|gb|EDW16039.1| GI10305 [Drosophila mojavensis]

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 274/579 (47%), Positives = 339/579 (58%), Gaps = 87/579 (15%)

Query: 1   MWKAAAGSGVAPVVANQDDDDWETDPDFINDVSEQEQRWGSKTIPGSGR-TGGTIDMKQL 59
           MWKA AG  +    A  +DDDWETDPDF+NDVSEQEQRWGSKTI GSGR  GG IDM +L
Sbjct: 1   MWKATAGHQIQATSA-AEDDDWETDPDFVNDVSEQEQRWGSKTIDGSGRDGGGAIDMNKL 59

Query: 60  REEVAISDACYKQKQLEEGSKASYGYGGKFGVEKDRMDESAVGHDYVAQLHQHESQSDYK 119
           REE   SD   K+KQL +   A YGYGGKFGVEKDRMD+SAVGHDY  ++ +H SQ DY 
Sbjct: 60  REETEKSD-LNKKKQLLKDQNAGYGYGGKFGVEKDRMDKSAVGHDYQGKVDKHASQVDYS 118

Query: 120 TGFGGKFGVQNDRVDKSAVTWDHKEVIEKHASQKDYSSGFGGKFGVQKDRQDKSAVGWDH 179
            GFGGK+GVQ +RVDKSAV WDH E +EKH SQKDYS GFGGKFGVQ+DR+DKSA+GWDH
Sbjct: 119 EGFGGKYGVQTNRVDKSAVGWDHIEKVEKHESQKDYSKGFGGKFGVQEDRKDKSALGWDH 178

Query: 180 QEKIEKHESQKDYAKGFGGKFGIESDRQDKSAVGWDHVEKVDKHQSQKDDNRQVVTSSKV 239
            EK+EKHESQKDY+KGFGGKFG++ DR+DKSAVGWDH+E   KH SQ D           
Sbjct: 179 IEKVEKHESQKDYSKGFGGKFGVQEDRKDKSAVGWDHIEAPQKHGSQVDH---------- 228

Query: 240 KDLIAANSTNASKENIKPKPNIGHVKPSNLRAKFENLAKQTEEESRKRSEEEKEKRKLKD 299
                           K KP I   KPSNLRAKFENLAK +EEESRKR+EE+K  R+ KD
Sbjct: 229 ----------------KVKPIIEGAKPSNLRAKFENLAKNSEEESRKRAEEQKRLREAKD 272

Query: 300 QIDLEQAQK-----------LEERRLSELKIKEEEIEKKLNGHSDVPL-------SPSTE 341
           + D E+A K            EE R   +K     I+   +G     +       SP  E
Sbjct: 273 KRDREEAAKQTVVENTPLPSAEEARTPPVKGSRTAIQTGRSGGIGNAISAFNQMQSPIAE 332

Query: 342 TP------------PVPV----KSILKQPTSDGIPIQNSNKEEEEKEKQRM------VQE 379
           TP            P PV     S+ +QP +   PI    KE     + ++      V  
Sbjct: 333 TPPARKEPIVIPKEPAPVESAKPSVAEQPAA---PIAAVAKEVPAAAEPKVSAPPPDVVP 389

Query: 380 EIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKA 439
           +I+ + +      E +        E   +   Q   + + Q E Q  L ++   +++ + 
Sbjct: 390 QIEIETVATPPSSEPQSPAHVAAVEQTPEPHSQPPVQVQSQPEPQAELEQEPLYQNQAEL 449

Query: 440 EEQARLLEQERLMEE----LRQQGTNE-----------DTEEDLGYTAVALYDYQASADD 484
           +  + L   +  + E        GT+E           D  ED G  A+ALYDYQA+ DD
Sbjct: 450 KSVSPLPAAQSPIPEAASAAAANGTSEEAIYANSDNLADYLEDTGIHAIALYDYQAADDD 509

Query: 485 EISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           EISFDPDD++T+IE ID+GWWRG C  +YGLFPANYV +
Sbjct: 510 EISFDPDDVVTHIEKIDDGWWRGLCKNRYGLFPANYVQV 548

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194899600|ref|XP_001979347.1| GG14937 [Drosophila erecta] gi|190651050|gb|EDV48305.1| GG14937 [Drosophila erecta]

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 270/581 (46%), Positives = 332/581 (57%), Gaps = 89/581 (15%)

Query: 1   MWKAAAGSGV-APVVANQDDDDWETDPDFINDVSEQEQRWGSKTIPGSGRTGGTIDMKQL 59
           MWKA+AG  + A   A+ +DDDWETDPDF+NDVSEQEQRWGSKTI GSGRT GTIDM +L
Sbjct: 1   MWKASAGHQIQATSAASAEDDDWETDPDFVNDVSEQEQRWGSKTIDGSGRTAGTIDMDKL 60

Query: 60  REEVAISDACYKQKQLEEGSKASYGYGGKFGVEKDRMDESAVGHDYVAQLHQHESQSDYK 119
           REE   +D   K+KQL +   A YGYGGKFGVEKDRMD+SAVGHDY  ++ +H SQ DY 
Sbjct: 61  REETEQAD-LDKKKQLLKDQNAGYGYGGKFGVEKDRMDKSAVGHDYQGKVGKHASQKDYS 119

Query: 120 TGFGGKFGVQNDRVDKSAVTWDHKEVIEKHASQKDYSSGFGGKFGVQKDRQDKSAVGWDH 179
            GFGGKFGVQ DR DKSAV WDH E +EKHASQKDY++GFGGKFGVQ DR DKSAVGWDH
Sbjct: 120 DGFGGKFGVQEDRKDKSAVGWDHVEKVEKHASQKDYATGFGGKFGVQSDRVDKSAVGWDH 179

Query: 180 QEKIEKHESQKDYAKGFGGKFGIESDRQDKSAVGWDHVEKVDKHQSQKDDNRQVVTSSKV 239
            EK+EKHESQKDY+KGFGGKFG++ DR+DKSAVGWDH E   KH SQ D           
Sbjct: 180 IEKVEKHESQKDYSKGFGGKFGVQEDRKDKSAVGWDHKEAPQKHASQVDH---------- 229

Query: 240 KDLIAANSTNASKENIKPKPNIGHVKPSNLRAKFENLAKQTEEESRKRSEEEKEKRKLKD 299
                           K KP I   KPSNLRAKFENLAK +EEESRKR+EE+K  R+ KD
Sbjct: 230 ----------------KVKPVIEGAKPSNLRAKFENLAKNSEEESRKRAEEQKRLREAKD 273

Query: 300 QIDLEQAQK--------LEERRLSELKIKEEEIEKKLNGHSDVPL-------SPSTETPP 344
           + D E+A K              +  K     I+    G     +       SP +ETPP
Sbjct: 274 KRDREEAAKKTVAENTPRSSTETTPPKGSRAAIQTGRTGGIGNAISAFNQMQSPVSETPP 333

Query: 345 VPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQ-------- 396
              + I+        P++   KEE +      V        L R+ E+            
Sbjct: 334 ARKEPIV---IPKAQPVKVEAKEEPKAAATPAVIAPAPAVVLARESEIAPVAKAAAPPPD 390

Query: 397 IRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQERLME--- 453
           +  + E E +      E +           +  + Q E +  A+ +  ++E+E L +   
Sbjct: 391 VVPQIEVETVATPPSSEPQSPVNVPTPHPEVQAQVQPEPQPPADPEP-VVEEEPLYQNQA 449

Query: 454 ELRQQG----TNEDTEEDLGYTAVA---------------------------LYDYQASA 482
           E++       TN  T E +  ++ A                           LYDYQA+ 
Sbjct: 450 EIKSASPLPPTNGTTSEAVAPSSGATVPEEAIYANSDNLADYLEDTGIHAIALYDYQAAD 509

Query: 483 DDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           DDEISFDPDD+IT+IE ID+GWWRG C  +YGLFPANYV +
Sbjct: 510 DDEISFDPDDVITHIEKIDDGWWRGLCKNRYGLFPANYVQV 550

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347972305|ref|XP_557457.4| AGAP004625-PA [Anopheles gambiae str. PEST] gi|347972307|ref|XP_003436876.1| AGAP004625-PB [Anopheles gambiae str. PEST] gi|333469312|gb|EAL40169.4| AGAP004625-PA [Anopheles gambiae str. PEST] gi|333469313|gb|EGK97247.1| AGAP004625-PB [Anopheles gambiae str. PEST]

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 261/552 (47%), Positives = 340/552 (61%), Gaps = 54/552 (9%)

Query: 1   MWKAAAGSGVAPVVANQ-DDDDWETDPDFINDVSEQEQRWGSKTIPGSGRTGGTIDMKQL 59
           MWK+ AG  +     NQ +DDDWETDPDF+NDVSEQEQRWGSKT+ GSGR    IDM+QL
Sbjct: 1   MWKSTAGRDIDTTGVNQGEDDDWETDPDFVNDVSEQEQRWGSKTVEGSGRNAAAIDMQQL 60

Query: 60  REEVAISDACYKQKQLEEGSKASYGYGGKFGVEKDRMDESAVGHDYVAQLHQHESQSDYK 119
           REE   +D+   +K+ +EG KAS+GYGGKFGVEKDRMD+SAVGH+++ ++ +H SQ DY 
Sbjct: 61  REETERADS---EKKRKEGPKASHGYGGKFGVEKDRMDKSAVGHEHIEKVEKHASQKDYV 117

Query: 120 TGFGGKFGVQNDRVDKSAVTWDHKEVIEKHASQKDYSSGFGGKFGVQKDRQDKSAVGWDH 179
           +GFGGKFGVQ DRVDKSA  WDH E ++KH SQKDY +GFGGKFGVQ+DRQDKSAVGWDH
Sbjct: 118 SGFGGKFGVQKDRVDKSAHGWDHVEKVDKHESQKDYKTGFGGKFGVQQDRQDKSAVGWDH 177

Query: 180 QEKIEKHESQKDYAKGFGGKFGIESDRQDKSAVGWDHVEKVDKHQSQKD----------- 228
            E  +KHESQ D+  GFGGKFG+++DR+DKSA GWDHVEK   H+SQ D           
Sbjct: 178 IEAPQKHESQIDHKVGFGGKFGVQTDRKDKSAFGWDHVEKPQMHESQLDHKIGFGGKFGV 237

Query: 229 -DNR--QVVTSSKVKDLIAANSTNASKENIKPKPNIGHVKPSNLRAKFENLAKQTEEESR 285
            ++R  +     + +D I  N T       K KP+IG  KPSNLRAKFEN A   EEE+R
Sbjct: 238 QNDRMDKSAVGFQEQDKIGTNYT-------KVKPDIGSAKPSNLRAKFENFAATAEEEAR 290

Query: 286 KRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKKLNGHSDVPLSPSTETPPV 345
           KR++E+K  R+ KD+ D E+A K    RL   +            HS     P       
Sbjct: 291 KRADEQKRLREEKDRCDREEAAK----RLVNCR-----------NHSAESAEPKKPERKG 335

Query: 346 PVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQEN 405
           P+ +  +   S  I   N+ +E   KEK R  ++ I   + +   +  +  +    +  +
Sbjct: 336 PINTGREAGVSSAISNFNNPQENITKEKTR--KDPIVLPKQDEPPKFVQPDVIPSSDSTS 393

Query: 406 IK--KKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQA-------RLLEQERLMEELR 456
           +   K KE + +E       + L + +        A E+            QE+  + + 
Sbjct: 394 VPTAKTKEDQPEESAGHAVQEPLPVARTSYSATPIAVEETDEAPVTDSTAHQEQTTDTVP 453

Query: 457 QQGTNED---TEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQY 513
            Q   E+   + ++ G  A+ALYDYQA+ADDEISFDPDD IT+IEMIDEGWWRG+C+ +Y
Sbjct: 454 VQDDVEEFILSPDNPGIQAIALYDYQAAADDEISFDPDDKITHIEMIDEGWWRGWCNNKY 513

Query: 514 GLFPANYVSLQQ 525
           GLFPANYV L Q
Sbjct: 514 GLFPANYVQLLQ 525

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|3869204|dbj|BAA34397.1| Cortactin [Drosophila melanogaster] gi|9279807|dbj|BAB01490.1| cortactin [Drosophila melanogaster]

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 270/583 (46%), Positives = 331/583 (56%), Gaps = 89/583 (15%)

Query: 1   MWKAAAGSGV-APVVANQDDDDWETDPDFINDVSEQEQRWGSKTIPGSGRTGGTIDMKQL 59
           MWKA+AG  + A   A+ +DDDWETDPDF+NDVSEQEQRWGSKTI GSGRT GTIDM +L
Sbjct: 1   MWKASAGHQIQATSAASAEDDDWETDPDFVNDVSEQEQRWGSKTIDGSGRTAGTIDMDKL 60

Query: 60  REEVAISDACYKQKQLEEGSKASYGYGGKFGVEKDRMDESAVGHDYVAQLHQHESQSDYK 119
           REE   +D   K+KQL +   A YGYGGKFGVEKDRMD+SAVGHDY  ++ +H SQ DY 
Sbjct: 61  REETEQAD-LDKKKQLLKDQNAGYGYGGKFGVEKDRMDKSAVGHDYQGKVGKHASQKDYS 119

Query: 120 TGFGGKFGVQNDRVDKSAVTWDHKEVIEKHASQKDYSSGFGGKFGVQKDRQDKSAVGWDH 179
            GFGGKFGVQ DR DKSAV WDH E +EKHASQKDY++GFGGKFGVQ DR DKSAVGWDH
Sbjct: 120 DGFGGKFGVQEDRKDKSAVGWDHVEKVEKHASQKDYATGFGGKFGVQSDRVDKSAVGWDH 179

Query: 180 QEKIEKHESQKDYAKGFGGKFGIESDRQDKSAVGWDHVEKVDKHQSQKDDNRQVVTSSKV 239
            EK+EKHESQKDY+KGFGGKFG++ DR+DKSAVGWDH E   KH SQ D           
Sbjct: 180 IEKVEKHESQKDYSKGFGGKFGVQEDRKDKSAVGWDHKEAPQKHASQVDH---------- 229

Query: 240 KDLIAANSTNASKENIKPKPNIGHVKPSNLRAKFENLAKQTEEESRKRSEEEKEKRKLKD 299
                           K KP I   KPSNLRAKFENLAK +EEESRKR+EE+K  R+ KD
Sbjct: 230 ----------------KVKPVIEGAKPSNLRAKFENLAKNSEEESRKRAEEQKRLREAKD 273

Query: 300 QIDLEQAQKL-----EERRLSEL---KIKEEEIEKKLNGHSDVPL-------SPSTETPP 344
           + D E+A K        R  +E    K     I+    G     +       SP +ETPP
Sbjct: 274 KRDREEAAKKTVAENTPRTSTEAPPPKGSRAAIQTGRTGGIGNAISAFNQMQSPVSETPP 333

Query: 345 VPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQ-------- 396
              + I+  P +  + I+   KEE                   R+ E             
Sbjct: 334 ARKEPIII-PKAQPVKIEVEAKEEPTASTTSAAVAPTPTVVPAREPETAPVAKATAPPPD 392

Query: 397 --IRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQERLM-- 452
              +I+ E  +   + E +        + + L   + Q E + +A+ +  ++E+E L   
Sbjct: 393 VVPQIEVETVDTPPRSEPQSPVYVPTPQPEVLAQVQVQPEPQPQADPEP-VVEEEPLYQN 451

Query: 453 ------------------EELRQQGTNEDTEEDLGYTAVALYDY--------------QA 480
                             E +   GT    EE +   +  L DY              QA
Sbjct: 452 QAEIKAASPLPPTNGTVSEAVAPSGTATVPEEAIYANSDNLADYLEDTGIHAIALYDYQA 511

Query: 481 SADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           + DDEISFDPDD+IT+IE ID+GWWRG C  +YGLFPANYV +
Sbjct: 512 ADDDEISFDPDDVITHIEKIDDGWWRGLCKNRYGLFPANYVQV 554

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24648611|ref|NP_524426.2| cortactin, isoform A [Drosophila melanogaster] gi|386766184|ref|NP_001247222.1| cortactin, isoform B [Drosophila melanogaster] gi|386766186|ref|NP_001247223.1| cortactin, isoform C [Drosophila melanogaster] gi|386766188|ref|NP_001247224.1| cortactin, isoform D [Drosophila melanogaster] gi|7300693|gb|AAF55840.1| cortactin, isoform A [Drosophila melanogaster] gi|15291859|gb|AAK93198.1| LD29964p [Drosophila melanogaster] gi|220945924|gb|ACL85505.1| Cortactin-PA [synthetic construct] gi|383292848|gb|AFH06540.1| cortactin, isoform B [Drosophila melanogaster] gi|383292849|gb|AFH06541.1| cortactin, isoform C [Drosophila melanogaster] gi|383292850|gb|AFH06542.1| cortactin, isoform D [Drosophila melanogaster]

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 267/582 (45%), Positives = 325/582 (55%), Gaps = 87/582 (14%)

Query: 1   MWKAAAGSGV-APVVANQDDDDWETDPDFINDVSEQEQRWGSKTIPGSGRTGGTIDMKQL 59
           MWKA+AG  + A   A+ +DDDWETDPDF+NDVSEQEQRWGSKTI GSGRT GTIDM +L
Sbjct: 1   MWKASAGHQIQATSAASAEDDDWETDPDFVNDVSEQEQRWGSKTIDGSGRTAGTIDMDKL 60

Query: 60  REEVAISDACYKQKQLEEGSKASYGYGGKFGVEKDRMDESAVGHDYVAQLHQHESQSDYK 119
           REE   +D   K+KQL +   A YGYGGKFGVEKDRMD+SAVGHDY  ++ +H SQ DY 
Sbjct: 61  REETEQAD-LDKKKQLLKDQNAGYGYGGKFGVEKDRMDKSAVGHDYQGKVGKHASQKDYS 119

Query: 120 TGFGGKFGVQNDRVDKSAVTWDHKEVIEKHASQKDYSSGFGGKFGVQKDRQDKSAVGWDH 179
            GFGGKFGVQ DR DKSAV WDH E +EKHASQKDY++GFGGKFGVQ DR DKSAVGWDH
Sbjct: 120 DGFGGKFGVQEDRKDKSAVGWDHVEKVEKHASQKDYATGFGGKFGVQSDRVDKSAVGWDH 179

Query: 180 QEKIEKHESQKDYAKGFGGKFGIESDRQDKSAVGWDHVEKVDKHQSQKDDNRQVVTSSKV 239
            EK+EKHESQKDY+KGFGGKFG++ DR+DKSAVGWDH E   KH SQ D           
Sbjct: 180 IEKVEKHESQKDYSKGFGGKFGVQEDRKDKSAVGWDHKEAPQKHASQVDH---------- 229

Query: 240 KDLIAANSTNASKENIKPKPNIGHVKPSNLRAKFENLAKQTEEESRKRSEEEKEKRKLKD 299
                           K KP I   KPSNLRAKFENLAK +EEESRKR+EE+K  R+ KD
Sbjct: 230 ----------------KVKPVIEGAKPSNLRAKFENLAKNSEEESRKRAEEQKRLREAKD 273

Query: 300 QIDLEQAQKL-----EERRLSEL---KIKEEEIEKKLNGHSDVPL-------SPSTETPP 344
           + D E+A K        R  +E    K     I+    G     +       SP +ETPP
Sbjct: 274 KRDREEAAKKTVAENTPRTSTEAPPPKGSRAAIQTGRTGGIGNAISAFNQMQSPVSETPP 333

Query: 345 VPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQE 404
              + I+  P +  + I+   KEE                   R+ E            +
Sbjct: 334 ARKEPIII-PKAQPVKIELEAKEEPTASTTSAAVAPTPTVVPAREPETAPVAKAAAPPPD 392

Query: 405 NIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQAR---------LLEQERLM--- 452
            + + + +        E    + +   Q E   + + Q           ++E+E L    
Sbjct: 393 VVPQIEVETVDTPPRSEPQSPVYVPTPQPEVHAQVQVQPEPQPQADPEPVVEEEPLYQNQ 452

Query: 453 -----------------EELRQQGTNEDTEEDLGYTAVALYDY--------------QAS 481
                            E +   GT    EE +   +  L DY              QA+
Sbjct: 453 AEIKAASPLPPTNGTVSEAVAPSGTATVPEEAIYANSDNLADYLEDTGIHAIALYDYQAA 512

Query: 482 ADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
            DDEISFDPDD+IT+IE ID+GWWRG C  +YGLFPANYV +
Sbjct: 513 DDDEISFDPDDVITHIEKIDDGWWRGLCKNRYGLFPANYVQV 554

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|387015284|gb|AFJ49761.1| Cortactin [Crotalus adamanteus]

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 256/572 (44%), Positives = 335/572 (58%), Gaps = 106/572 (18%)

Query: 1   MWKAAAGSGVAPVVANQDD--DDWETDPDFINDVSEQEQRWGSKTIPGSGRTGGTIDMKQ 58
           MWKA+AG     +  +QDD  DDWETDPDF+NDVSE+EQRWG+KT+ GSG     I++ Q
Sbjct: 1   MWKASAGH---SITLSQDDGADDWETDPDFVNDVSEKEQRWGAKTVQGSGHQE-HINIHQ 56

Query: 59  LREEVAISDACYKQKQLEEGSKASYGYGGKFGVEKDRMDESAVGHDYVAQLHQHESQSDY 118
           LRE V+      K+K+LE G +AS+GYGGKFGVE+DRMD+SAVGH+Y ++L +H SQ D 
Sbjct: 57  LRENVSQEHQSLKEKELESGPQASHGYGGKFGVEQDRMDKSAVGHEYQSKLSKHCSQVDS 116

Query: 119 KTGFGGKFGVQNDRVDKSAVTWDHKEVIEKHASQKDYSSGFGGKFGVQKDRQDKSAVGWD 178
             GFGGKFGVQ DRVD+SAV ++++   EKHASQKDYSSGFGGK+GVQ DR DKSA+G+D
Sbjct: 117 VKGFGGKFGVQVDRVDQSAVGFEYQGKTEKHASQKDYSSGFGGKYGVQADRVDKSAMGFD 176

Query: 179 HQEKIEKHESQKDYA-------------------------------------KGFGGKFG 201
           +Q K EKHESQKDY+                                     KGFGGKFG
Sbjct: 177 YQGKTEKHESQKDYSRGFGGKYGVDKEKVDKSAVGFEYQGKTEKHESQKDYTKGFGGKFG 236

Query: 202 IESDRQDKSAVGWDHVEKVDKHQSQKDDNRQVVTSSKV-KDLIAANSTN------ASKEN 254
           I++DRQDK A+GWDH EKV  H+SQKD ++       V KD +  N+++       S   
Sbjct: 237 IQTDRQDKCALGWDHQEKVQLHESQKDYSKGFGGKYGVQKDRMDKNASSFEDIEKLSSTY 296

Query: 255 IKPKP-NIGHVKPSNLRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERR 313
            K KP    + K SN+RA FENLAK  E+E R+++E E+ +R  +D+ + E+A++     
Sbjct: 297 QKTKPVEAANAKTSNIRANFENLAKDKEQEDRRKAEIERAQRMAQDKEEQEEARRA---- 352

Query: 314 LSELKIKEEEIEKKLNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEK 373
                IKE+   KK                P P +S+  QP             EEEK  
Sbjct: 353 -----IKEKGKPKK----------------PNPTESLAPQP-------------EEEKVP 378

Query: 374 QRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQE 433
             ++ E+    E              K    N     E E++ + E+ + Q+ + +    
Sbjct: 379 SSVIYEDAASFES-----------GYKSSSANPSNVHEPEQESKAEESDYQEAISQ---- 423

Query: 434 EDRLKAEEQARLLEQERLMEELRQQGTNEDTEEDLGYTAVALYDYQASADDEISFDPDDI 493
             R  A E   + E+  +  + +   T  + E DLG TA+ALYDYQA+ DDEISFDPDDI
Sbjct: 424 --REPAYESGAVYEEAAVGNQYQTDETAYEYETDLGITAIALYDYQAAGDDEISFDPDDI 481

Query: 494 ITNIEMIDEGWWRGYCHGQYGLFPANYVSLQQ 525
           ITNIEMID+GWWRG C G+YGLFPANYV L+Q
Sbjct: 482 ITNIEMIDDGWWRGVCKGRYGLFPANYVELRQ 513

Source: Crotalus adamanteus

Species: Crotalus adamanteus

Genus: Crotalus

Family: Viperidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|194744919|ref|XP_001954940.1| GF18522 [Drosophila ananassae] gi|190627977|gb|EDV43501.1| GF18522 [Drosophila ananassae]

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 253/573 (44%), Positives = 316/573 (55%), Gaps = 80/573 (13%)

Query: 1   MWKAAAGSGVAPVVANQDDDDWETDPDFINDVSEQEQRWGSKTIPGSGRTGGTIDMKQLR 60
           MWKA AG  +   +   +DDDWETDPDFINDVSEQEQRWGSKTI GSGRT G IDM +LR
Sbjct: 1   MWKATAGHQIQARI-QAEDDDWETDPDFINDVSEQEQRWGSKTIDGSGRTAGAIDMDKLR 59

Query: 61  EEVAISDACYKQKQLEEGSKASYGYGGKFGVEKDRMDESAVGHDYVAQLHQHESQSDYKT 120
           EE   +D   K+KQL +   A YGYGGKFGVEKDRMD+SAVGHDY+ ++ +H SQ DY  
Sbjct: 60  EETEKAD-LDKKKQLLKEQNAGYGYGGKFGVEKDRMDKSAVGHDYLEKVGKHASQKDYSE 118

Query: 121 GFGGKFGVQNDRVDKSAVTWDHKEVIEKHASQKDYSSGFGGKFGVQKDRQDKSAVGWDHQ 180
           GFGGKFGVQ +RVDKSAV WDH E +EKHASQKDY++GFGGKFGVQ DR DKSAVGWDH 
Sbjct: 119 GFGGKFGVQTNRVDKSAVGWDHVEKVEKHASQKDYATGFGGKFGVQSDRVDKSAVGWDHI 178

Query: 181 EKIEKHESQKDYAKGFGGKFGIESDRQDKSAVGWDHVEKVDKHQSQKDDN-RQVVTSSKV 239
           EK+EKHESQKDY+KGFGGKFG++ DR+DKSAVGWDH E   KH SQ D   + V+   K 
Sbjct: 179 EKVEKHESQKDYSKGFGGKFGVQEDRKDKSAVGWDHKEAPQKHASQVDHKVKPVIEGVKP 238

Query: 240 KDL------IAANSTNASKENIKPKPNIGHVKPSNLRAKFENLAKQTE-EESRKRSEEEK 292
            +L      +A NS   S++  + +  +   K    R   E  AKQT  E + K S E  
Sbjct: 239 SNLRAKFENLAKNSEEESRKRAEEQKRLREAKDKRDR---EEAAKQTVVENTPKTSTETP 295

Query: 293 EKRKLKDQIDLEQAQKL---------EERRLSELKIKEEE---IEKKLNGHSDVPLSPST 340
             +  +  I   +A  +          +  +SE     +E   I K L    +VP     
Sbjct: 296 PPKGSRAAIQTGRAGGIGNAISAFNQMQSPVSETPPARKEPIVIPKALPTKVEVPKEEPA 355

Query: 341 ETP--------------------------PVPVKSILKQPTSDGIPIQNSNKEEEEKEKQ 374
           E P                          P PV  ++ Q   + +P     + E E    
Sbjct: 356 EVPVKAPTPAVVAAAAPEPAPEAKAPSPIPTPVPDLVPQIEVETVP--TPPRSEPESPVH 413

Query: 375 RMVQEEIKRKELERKEELEKEQIRIKEE----QENIKKKKEQEEKERKEQEENQKLLLKK 430
               +   + E +   E+  + + I+E     Q  IK             E         
Sbjct: 414 EPTPKAPVQPEAQAPAEVPAQPVAIEEPLYQNQAEIKAASPVPPSNGSATEAT------- 466

Query: 431 QQEEDRLKAEEQARLLEQERLMEELRQQGTNEDTEEDLGYTAVALYDYQASADDEISFDP 490
                   A E+A     + L + L          ED G  A+ALYDYQA+ DDEISFDP
Sbjct: 467 ------ASAPEEAIYANSDNLADYL----------EDTGIHAIALYDYQAADDDEISFDP 510

Query: 491 DDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           DD++T+I+ ID+GWWRG C  +YGLFPANYV +
Sbjct: 511 DDVVTHIDKIDDGWWRGLCKNRYGLFPANYVQV 543

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	525
FB|FBgn0025865	559	Cortactin "Cortactin" [Drosoph	0.525	0.493	0.600	1.2e-114
UNIPROTKB|Q01406	563	CTTN1 "Src substrate protein p	0.426	0.397	0.626	2e-102
UNIPROTKB|F1NU55	562	CTTN "Uncharacterized protein"	0.426	0.398	0.626	2e-102
UNIPROTKB|Q14247	550	CTTN "Src substrate cortactin"	0.432	0.412	0.614	3.2e-102
RGD|619839	509	Cttn "cortactin" [Rattus norve	0.432	0.445	0.618	6.6e-102
MGI|MGI:99695	546	Cttn "cortactin" [Mus musculus	0.432	0.415	0.618	6.6e-102
UNIPROTKB|E2RIQ2	541	CTTN "Uncharacterized protein"	0.432	0.419	0.614	1.8e-101
UNIPROTKB|Q1RMR3	538	CTTN "Cortactin" [Bos taurus (	0.432	0.421	0.600	4.6e-101
ZFIN|ZDB-GENE-040715-3	534	cttn "cortactin" [Danio rerio	0.430	0.423	0.578	1.4e-97
UNIPROTKB|Q4R7C6	475	Q4R7C6 "Testis cDNA, clone: Qt	0.411	0.454	0.587	2.1e-97

FB|FBgn0025865 Cortactin "Cortactin" [Drosophila melanogaster (taxid:7227)]

 Score = 883 (315.9 bits), Expect = 1.2e-114, Sum P(3) = 1.2e-114
 Identities = 173/288 (60%), Positives = 203/288 (70%)

Query:     1 MWKXXXXXXX-XXXXXNQDDDDWETDPDFINDVSEQEQRWGSKTIPGSGRTGGTIDMKQL 59
             MWK             + +DDDWETDPDF+NDVSEQEQRWGSKTI GSGRT GTIDM +L
Sbjct:     1 MWKASAGHQIQATSAASAEDDDWETDPDFVNDVSEQEQRWGSKTIDGSGRTAGTIDMDKL 60

Query:    60 REEVAISDACYKQKQLEEGSKASYGYGGKFGVEKDRMDESAVGHDYVAQLHQHESQSDYK 119
             REE   +D   K+KQL +   A YGYGGKFGVEKDRMD+SAVGHDY  ++ +H SQ DY 
Sbjct:    61 REETEQADLD-KKKQLLKDQNAGYGYGGKFGVEKDRMDKSAVGHDYQGKVGKHASQKDYS 119

Query:   120 TGFGGKFGVQNDRVDKSAVTWDHKEVIEKHASQKDYSSGFGGKFGVQKDRQDKSAVGWDH 179
              GFGGKFGVQ DR DKSAV WDH E +EKHASQKDY++GFGGKFGVQ DR DKSAVGWDH
Sbjct:   120 DGFGGKFGVQEDRKDKSAVGWDHVEKVEKHASQKDYATGFGGKFGVQSDRVDKSAVGWDH 179

Query:   180 QEKIEKHESQKDYAKGFGGKFGIESDRQDKSAVGWDHVEKVDKHQSQKDDN-RQVVTSSK 238
              EK+EKHESQKDY+KGFGGKFG++ DR+DKSAVGWDH E   KH SQ D   + V+  +K
Sbjct:   180 IEKVEKHESQKDYSKGFGGKFGVQEDRKDKSAVGWDHKEAPQKHASQVDHKVKPVIEGAK 239

Query:   239 VKDL------IAANSTNASKENIKPKPNIGHVKPSNLRAKFENLAKQT 280
               +L      +A NS   S++  + +  +   K    R   E  AK+T
Sbjct:   240 PSNLRAKFENLAKNSEEESRKRAEEQKRLREAKDKRDR---EEAAKKT 284

GO:0007010 "cytoskeleton organization" evidence=ISS

GO:0005856 "cytoskeleton" evidence=ISS

GO:0070864 "sperm individualization complex" evidence=IDA

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0007298 "border follicle cell migration" evidence=IMP

GO:0007301 "female germline ring canal formation" evidence=IMP

GO:0001726 "ruffle" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0043234 "protein complex" evidence=IPI

GO:0048260 "positive regulation of receptor-mediated endocytosis" evidence=IGI

GO:0070064 "proline-rich region binding" evidence=IGI

UNIPROTKB|Q01406 CTTN1 "Src substrate protein p85" [Gallus gallus (taxid:9031)]

 Score = 749 (268.7 bits), Expect = 2.0e-102, Sum P(2) = 2.0e-102
 Identities = 144/230 (62%), Positives = 178/230 (77%)

Query:     1 MWKXXXXXXXXXXXXNQDD--DDWETDPDFINDVSEQEQRWGSKTIPGSGRTGGTIDMKQ 58
             MWK            +QDD  DDWETDPDF+NDVSE+EQRWG+KT+ GSG     I++ Q
Sbjct:    11 MWKATAGHSIAV---SQDDGADDWETDPDFVNDVSEKEQRWGAKTVKGSGHQEH-INIHQ 66

Query:    59 LREEVAISDACYKQKQLEEGSKASYGYGGKFGVEKDRMDESAVGHDYVAQLHQHESQSDY 118
             LRE V       K+K+LE G KAS+GYGGKFGVE+DRMD+SAVGH+Y ++L +H SQ D 
Sbjct:    67 LRENVFQEHQTIKEKELETGPKASHGYGGKFGVEQDRMDKSAVGHEYQSKLSKHCSQVDS 126

Query:   119 KTGFGGKFGVQNDRVDKSAVTWDHKEVIEKHASQKDYSSGFGGKFGVQKDRQDKSAVGWD 178
               GFGGKFGVQ DRVD+SAV ++++   EKHASQKDYSSGFGGK+GVQ DR DKSAVG+D
Sbjct:   127 VKGFGGKFGVQTDRVDQSAVGFEYQGKTEKHASQKDYSSGFGGKYGVQADRVDKSAVGFD 186

Query:   179 HQEKIEKHESQKDYAKGFGGKFGIESDRQDKSAVGWDHVEKVDKHQSQKD 228
             +Q K EKHESQKDY+KGFGGK+G++ D+ DKSAVG+++  K +KH+SQKD
Sbjct:   187 YQGKTEKHESQKDYSKGFGGKYGVDKDKVDKSAVGFEYQGKTEKHESQKD 236

GO:0001726 "ruffle" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1NU55 CTTN "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 749 (268.7 bits), Expect = 2.0e-102, Sum P(2) = 2.0e-102
 Identities = 144/230 (62%), Positives = 178/230 (77%)

Query:     1 MWKXXXXXXXXXXXXNQDD--DDWETDPDFINDVSEQEQRWGSKTIPGSGRTGGTIDMKQ 58
             MWK            +QDD  DDWETDPDF+NDVSE+EQRWG+KT+ GSG     I++ Q
Sbjct:    11 MWKATAGHSIAV---SQDDGADDWETDPDFVNDVSEKEQRWGAKTVKGSGHQEH-INIHQ 66

Query:    59 LREEVAISDACYKQKQLEEGSKASYGYGGKFGVEKDRMDESAVGHDYVAQLHQHESQSDY 118
             LRE V       K+K+LE G KAS+GYGGKFGVE+DRMD+SAVGH+Y ++L +H SQ D 
Sbjct:    67 LRENVFQEHQTIKEKELETGPKASHGYGGKFGVEQDRMDKSAVGHEYQSKLSKHCSQVDS 126

Query:   119 KTGFGGKFGVQNDRVDKSAVTWDHKEVIEKHASQKDYSSGFGGKFGVQKDRQDKSAVGWD 178
               GFGGKFGVQ DRVD+SAV ++++   EKHASQKDYSSGFGGK+GVQ DR DKSAVG+D
Sbjct:   127 VKGFGGKFGVQTDRVDQSAVGFEYQGKTEKHASQKDYSSGFGGKYGVQADRVDKSAVGFD 186

Query:   179 HQEKIEKHESQKDYAKGFGGKFGIESDRQDKSAVGWDHVEKVDKHQSQKD 228
             +Q K EKHESQKDY+KGFGGK+G++ D+ DKSAVG+++  K +KH+SQKD
Sbjct:   187 YQGKTEKHESQKDYSKGFGGKYGVDKDKVDKSAVGFEYQGKTEKHESQKD 236

GO:0005856 "cytoskeleton" evidence=IEA

GO:0001726 "ruffle" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

UNIPROTKB|Q14247 CTTN "Src substrate cortactin" [Homo sapiens (taxid:9606)]

 Score = 742 (266.3 bits), Expect = 3.2e-102, Sum P(2) = 3.2e-102
 Identities = 140/228 (61%), Positives = 175/228 (76%)

Query:     1 MWKXXXXXXXXXXXXNQDDDDWETDPDFINDVSEQEQRWGSKTIPGSGRTGGTIDMKQLR 60
             MWK            +   DDWETDPDF+NDVSE+EQRWG+KT+ GSG     I++ +LR
Sbjct:     1 MWKASAGHAVSIAQDDAGADDWETDPDFVNDVSEKEQRWGAKTVQGSGHQEH-INIHKLR 59

Query:    61 EEVAISDACYKQKQLEEGSKASYGYGGKFGVEKDRMDESAVGHDYVAQLHQHESQSDYKT 120
             E V       K+K+LE G KAS+GYGGKFGVE+DRMD+SAVGH+Y ++L +H SQ D   
Sbjct:    60 ENVFQEHQTLKEKELETGPKASHGYGGKFGVEQDRMDKSAVGHEYQSKLSKHCSQVDSVR 119

Query:   121 GFGGKFGVQNDRVDKSAVTWDHKEVIEKHASQKDYSSGFGGKFGVQKDRQDKSAVGWDHQ 180
             GFGGKFGVQ DRVD+SAV ++++   EKHASQKDYSSGFGGK+GVQ DR DKSAVG+D+Q
Sbjct:   120 GFGGKFGVQMDRVDQSAVGFEYQGKTEKHASQKDYSSGFGGKYGVQADRVDKSAVGFDYQ 179

Query:   181 EKIEKHESQKDYAKGFGGKFGIESDRQDKSAVGWDHVEKVDKHQSQKD 228
              K EKHESQ+DY+KGFGGK+GI+ D+ DKSAVG+++  K +KH+SQKD
Sbjct:   180 GKTEKHESQRDYSKGFGGKYGIDKDKVDKSAVGFEYQGKTEKHESQKD 227

GO:0005856 "cytoskeleton" evidence=IEA

GO:0001726 "ruffle" evidence=ISS

GO:0005938 "cell cortex" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS;IDA

GO:0030027 "lamellipodium" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

RGD|619839 Cttn "cortactin" [Rattus norvegicus (taxid:10116)]

 Score = 744 (267.0 bits), Expect = 6.6e-102, Sum P(2) = 6.6e-102
 Identities = 141/228 (61%), Positives = 175/228 (76%)

Query:     1 MWKXXXXXXXXXXXXNQDDDDWETDPDFINDVSEQEQRWGSKTIPGSGRTGGTIDMKQLR 60
             MWK            +   DDWETDPDF+NDVSE+EQRWG+KT+ GSG     I++ +LR
Sbjct:     1 MWKASAGHAVSITQDDGGADDWETDPDFVNDVSEKEQRWGAKTVQGSGHQEH-INIHKLR 59

Query:    61 EEVAISDACYKQKQLEEGSKASYGYGGKFGVEKDRMDESAVGHDYVAQLHQHESQSDYKT 120
             E V       K+K+LE G KAS+GYGGKFGVE+DRMD+SAVGH+Y ++L +H SQ D   
Sbjct:    60 ENVFQEHQTLKEKELETGPKASHGYGGKFGVEQDRMDKSAVGHEYQSKLSKHCSQVDSVR 119

Query:   121 GFGGKFGVQNDRVDKSAVTWDHKEVIEKHASQKDYSSGFGGKFGVQKDRQDKSAVGWDHQ 180
             GFGGKFGVQ DRVD+SAV ++++   EKHASQKDYSSGFGGK+GVQ DR DKSAVG+D+Q
Sbjct:   120 GFGGKFGVQMDRVDQSAVGFEYQGKTEKHASQKDYSSGFGGKYGVQADRVDKSAVGFDYQ 179

Query:   181 EKIEKHESQKDYAKGFGGKFGIESDRQDKSAVGWDHVEKVDKHQSQKD 228
              K EKHESQKDY+KGFGGK+GI+ D+ DKSAVG+++  K +KH+SQKD
Sbjct:   180 GKTEKHESQKDYSKGFGGKYGIDKDKVDKSAVGFEYQGKTEKHESQKD 227

GO:0001726 "ruffle" evidence=IEA;ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005938 "cell cortex" evidence=ISO

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

GO:0007420 "brain development" evidence=IEP

GO:0030027 "lamellipodium" evidence=IEA;ISO

GO:0070064 "proline-rich region binding" evidence=IPI

MGI|MGI:99695 Cttn "cortactin" [Mus musculus (taxid:10090)]

 Score = 743 (266.6 bits), Expect = 6.6e-102, Sum P(2) = 6.6e-102
 Identities = 141/228 (61%), Positives = 174/228 (76%)

Query:     1 MWKXXXXXXXXXXXXNQDDDDWETDPDFINDVSEQEQRWGSKTIPGSGRTGGTIDMKQLR 60
             MWK            +   DDWETDPDF+NDVSE+EQRWG+KT+ GSG     I++ +LR
Sbjct:     1 MWKASAGHAVSITQDDGGADDWETDPDFVNDVSEKEQRWGAKTVQGSGHQEH-INIHKLR 59

Query:    61 EEVAISDACYKQKQLEEGSKASYGYGGKFGVEKDRMDESAVGHDYVAQLHQHESQSDYKT 120
             E V       K+K+LE G KAS+GYGGKFGVE+DRMD SAVGH+Y ++L +H SQ D   
Sbjct:    60 ENVFQEHQTLKEKELETGPKASHGYGGKFGVEQDRMDRSAVGHEYQSKLSKHCSQVDSVR 119

Query:   121 GFGGKFGVQNDRVDKSAVTWDHKEVIEKHASQKDYSSGFGGKFGVQKDRQDKSAVGWDHQ 180
             GFGGKFGVQ DRVD+SAV ++++   EKHASQKDYSSGFGGK+GVQ DR DKSAVG+D+Q
Sbjct:   120 GFGGKFGVQMDRVDQSAVGFEYQGKTEKHASQKDYSSGFGGKYGVQADRVDKSAVGFDYQ 179

Query:   181 EKIEKHESQKDYAKGFGGKFGIESDRQDKSAVGWDHVEKVDKHQSQKD 228
              K EKHESQKDY+KGFGGK+GI+ D+ DKSAVG+++  K +KH+SQKD
Sbjct:   180 GKTEKHESQKDYSKGFGGKYGIDKDKVDKSAVGFEYQGKTEKHESQKD 227

GO:0001726 "ruffle" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005938 "cell cortex" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=ISO

GO:0030027 "lamellipodium" evidence=ISO;IDA

GO:0042995 "cell projection" evidence=IEA

GO:0070064 "proline-rich region binding" evidence=ISO

UNIPROTKB|E2RIQ2 CTTN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 740 (265.6 bits), Expect = 1.8e-101, Sum P(2) = 1.8e-101
 Identities = 140/228 (61%), Positives = 175/228 (76%)

Query:     1 MWKXXXXXXXXXXXXNQDDDDWETDPDFINDVSEQEQRWGSKTIPGSGRTGGTIDMKQLR 60
             MWK            +   DDWETDPDF+NDVSE+EQRWG+KT+ GSG     I++ +LR
Sbjct:     1 MWKASAGHAVSITQDDGGADDWETDPDFVNDVSEKEQRWGAKTVTGSGHQEH-INIHKLR 59

Query:    61 EEVAISDACYKQKQLEEGSKASYGYGGKFGVEKDRMDESAVGHDYVAQLHQHESQSDYKT 120
             E V       K+K+LE G KAS+GYGGKFGVE+DRMD+SAVGH+Y ++L +H SQ D   
Sbjct:    60 ENVFQEHQTLKEKELETGPKASHGYGGKFGVEQDRMDKSAVGHEYQSKLSKHCSQVDSVR 119

Query:   121 GFGGKFGVQNDRVDKSAVTWDHKEVIEKHASQKDYSSGFGGKFGVQKDRQDKSAVGWDHQ 180
             GFGGKFGVQ DRVD+SAV ++++   EKHASQ+DYSSGFGGK+GVQ DR DKSAVG+D+Q
Sbjct:   120 GFGGKFGVQVDRVDQSAVGFEYQGKTEKHASQRDYSSGFGGKYGVQADRVDKSAVGFDYQ 179

Query:   181 EKIEKHESQKDYAKGFGGKFGIESDRQDKSAVGWDHVEKVDKHQSQKD 228
              K EKHESQKDY+KGFGGK+GI+ D+ DKSAVG+++  K +KH+SQKD
Sbjct:   180 GKTEKHESQKDYSKGFGGKYGIDKDKVDKSAVGFEYQGKTEKHESQKD 227

GO:0030027 "lamellipodium" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0001726 "ruffle" evidence=IEA

UNIPROTKB|Q1RMR3 CTTN "Cortactin" [Bos taurus (taxid:9913)]

 Score = 726 (260.6 bits), Expect = 4.6e-101, Sum P(2) = 4.6e-101
 Identities = 137/228 (60%), Positives = 174/228 (76%)

Query:     1 MWKXXXXXXXXXXXXNQDDDDWETDPDFINDVSEQEQRWGSKTIPGSGRTGGTIDMKQLR 60
             MWK            +   DDWETDPDF+NDVSE+EQRWG+KT+ GSG     I++ +LR
Sbjct:     1 MWKASAGHTVSITPDDGGADDWETDPDFVNDVSEKEQRWGAKTVQGSGHQEH-INIHKLR 59

Query:    61 EEVAISDACYKQKQLEEGSKASYGYGGKFGVEKDRMDESAVGHDYVAQLHQHESQSDYKT 120
             E V       K+K+LE G KAS+GYGGKFGVE+DRMD+SAVGH+Y ++L +H SQ D   
Sbjct:    60 ENVFQEHQTLKEKELETGPKASHGYGGKFGVEQDRMDKSAVGHEYQSKLSKHCSQVDSVR 119

Query:   121 GFGGKFGVQNDRVDKSAVTWDHKEVIEKHASQKDYSSGFGGKFGVQKDRQDKSAVGWDHQ 180
             GFGGKFGVQ DRVD+SAV ++++   EKHASQKDYSSGFGGK+GVQ DR DKSAVG+D+Q
Sbjct:   120 GFGGKFGVQVDRVDQSAVGFEYQGKTEKHASQKDYSSGFGGKYGVQSDRVDKSAVGFDYQ 179

Query:   181 EKIEKHESQKDYAKGFGGKFGIESDRQDKSAVGWDHVEKVDKHQSQKD 228
              + EKH SQ+DY++GFGGK+GI+ D+ DKSAVG+++  K +KH+SQKD
Sbjct:   180 GETEKHGSQRDYSRGFGGKYGIDKDKVDKSAVGFEYQGKTEKHESQKD 227

GO:0030027 "lamellipodium" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0001726 "ruffle" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

ZFIN|ZDB-GENE-040715-3 cttn "cortactin" [Danio rerio (taxid:7955)]

 Score = 707 (253.9 bits), Expect = 1.4e-97, Sum P(2) = 1.4e-97
 Identities = 132/228 (57%), Positives = 176/228 (77%)

Query:     1 MWKXXXXXXXXXXXXNQDDDDWETDPDFINDVSEQEQRWGSKTIPGSGRTGGTIDMKQLR 60
             MWK            ++  DDWETDPDF NDVSE+EQRWG+KT+ GSG     I++ +LR
Sbjct:    68 MWKAAAGQSVSMSV-DEGADDWETDPDFENDVSEKEQRWGAKTVQGSGHQEH-INIHKLR 125

Query:    61 EEVAISDACYKQKQLEEGSKASYGYGGKFGVEKDRMDESAVGHDYVAQLHQHESQSDYKT 120
             + V+   +  KQK+L    KAS+GYGGKFG+++DRMD+SAVGH+Y ++L +H SQ+D   
Sbjct:   126 QTVSTEHSDLKQKELATMPKASHGYGGKFGLQQDRMDKSAVGHEYQSKLSKHCSQTDTSK 185

Query:   121 GFGGKFGVQNDRVDKSAVTWDHKEVIEKHASQKDYSSGFGGKFGVQKDRQDKSAVGWDHQ 180
             GFGGK+G+Q DRVD+SAV +++    EKHASQKDYS+GFGG++GVQ DR D+SAVG+++Q
Sbjct:   186 GFGGKYGLQEDRVDQSAVGFEYVGKTEKHASQKDYSTGFGGRYGVQADRVDQSAVGFEYQ 245

Query:   181 EKIEKHESQKDYAKGFGGKFGIESDRQDKSAVGWDHVEKVDKHQSQKD 228
              K EKHESQKDYAKGFGGKFG+E+D+ DKSA+G+++  K +KH+SQKD
Sbjct:   246 GKTEKHESQKDYAKGFGGKFGVETDKVDKSAMGFEYQGKTEKHESQKD 293

GO:0030027 "lamellipodium" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0001726 "ruffle" evidence=IEA

UNIPROTKB|Q4R7C6 Q4R7C6 "Testis cDNA, clone: QtsA-15617, similar to human hematopoietic cell-specific Lyn substrate 1 (HCLS1),mRNA, RefSeq: NM_005335.3" [Macaca fascicularis (taxid:9541)]

 Score = 712 (255.7 bits), Expect = 2.1e-97, Sum P(3) = 2.1e-97
 Identities = 128/218 (58%), Positives = 172/218 (78%)

Query:     1 MWKXXXXXXXXXXXXNQDDDDWETDPDFINDVSEQEQRWGSKTIPGSGRTGGTIDMKQLR 60
             MWK             Q DD W+TDPDF+ND+SE+EQRWG+KTI GSGRT   I++ QLR
Sbjct:     1 MWKSVVGHDVSVSVETQGDD-WDTDPDFVNDISEKEQRWGAKTIEGSGRTEH-INIHQLR 58

Query:    61 EEVAISDACYKQKQLEEGSKASYGYGGKFGVEKDRMDESAVGHDYVAQLHQHESQSDYKT 120
              +V+      K+K++E G KAS+GYGG+FGVE+DRMD+SAVGH+YVA++ +H SQ+D   
Sbjct:    59 NKVSEEHDVLKKKEMESGPKASHGYGGRFGVERDRMDKSAVGHEYVAEVEKHSSQTDAAK 118

Query:   121 GFGGKFGVQNDRVDKSAVTWDHKEVIEKHASQKDYSSGFGGKFGVQKDRQDKSAVGWDHQ 180
             GFGGK+GV+ DR DKSAV +D+K  +EKH SQKDYS GFGG++GV+KD++DK+A+G+D++
Sbjct:   119 GFGGKYGVERDRADKSAVGFDYKGEVEKHTSQKDYSRGFGGRYGVEKDKRDKAALGYDYK 178

Query:   181 EKIEKHESQKDYAKGFGGKFGIESDRQDKSAVGWDHVE 218
              + EKHESQ+DYAKGFGG++GI+ DR DKSAVG++ +E
Sbjct:   179 GETEKHESQRDYAKGFGGQYGIQKDRVDKSAVGFNEME 216

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0008284 "positive regulation of cell proliferation" evidence=ISS

GO:0009725 "response to hormone stimulus" evidence=ISS

GO:0030218 "erythrocyte differentiation" evidence=ISS

GO:0042531 "positive regulation of tyrosine phosphorylation of STAT protein" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q60598	SRC8_MOUSE	No assigned EC number	0.4242	0.9714	0.9340	yes	N/A
Q01406	SRC8_CHICK	No assigned EC number	0.3756	0.9428	0.8792	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	525
cd11959	53	cd11959, SH3_Cortactin, Src homology 3 domain of C	2e-33
cd12073	55	cd12073, SH3_HS1, Src homology 3 domain of Hematop	1e-27
cd11960	54	cd11960, SH3_Abp1_eu, Src homology 3 domain of eum	1e-26
cd11819	54	cd11819, SH3_Cortactin_like, Src homology 3 domain	2e-26
smart00326	56	smart00326, SH3, Src homology 3 domains	5e-19
cd00174	51	cd00174, SH3, Src Homology 3 domain superfamily	7e-19
cd11961	53	cd11961, SH3_Abp1_fungi_C2, Second C-terminal Src	1e-17
pfam02218	37	pfam02218, HS1_rep, Repeat in HS1/Cortactin	3e-16
cd11789	55	cd11789, SH3_Nebulin_family_C, C-terminal Src Homo	7e-15
cd11825	54	cd11825, SH3_PLCgamma, Src homology 3 domain of Ph	3e-14
cd11823	53	cd11823, SH3_Nostrin, Src homology 3 domain of Nit	3e-13
cd11805	53	cd11805, SH3_GRB2_like_C, C-terminal Src homology	3e-13
cd11772	53	cd11772, SH3_OSTF1, Src Homology 3 domain of metaz	3e-13
pfam02218	37	pfam02218, HS1_rep, Repeat in HS1/Cortactin	8e-13
pfam00018	47	pfam00018, SH3_1, SH3 domain	8e-13
cd11840	53	cd11840, SH3_Intersectin_5, Fifth Src homology 3 d	9e-13
cd11877	53	cd11877, SH3_PIX, Src Homology 3 domain of Pak Int	1e-12
cd11766	53	cd11766, SH3_Nck_2, Second Src Homology 3 domain o	1e-12
pfam02218	37	pfam02218, HS1_rep, Repeat in HS1/Cortactin	2e-12
cd11826	52	cd11826, SH3_Abi, Src homology 3 domain of Abl Int	3e-12
cd11820	54	cd11820, SH3_STAM, Src homology 3 domain of Signal	3e-12
cd11873	53	cd11873, SH3_CD2AP-like_1, First Src Homology 3 do	4e-12
cd11950	53	cd11950, SH3_GRAP2_C, C-terminal Src homology 3 do	4e-12
cd11962	54	cd11962, SH3_Abp1_fungi_C1, First C-terminal Src h	5e-12
cd11949	53	cd11949, SH3_GRB2_C, C-terminal Src homology 3 dom	8e-12
cd11827	53	cd11827, SH3_MyoIe_If_like, Src homology 3 domain	1e-11
pfam02218	37	pfam02218, HS1_rep, Repeat in HS1/Cortactin	2e-11
cd11803	55	cd11803, SH3_Endophilin_A, Src homology 3 domain o	3e-11
cd11933	58	cd11933, SH3_Nebulin_C, C-terminal Src Homology 3	7e-11
cd11882	54	cd11882, SH3_GRAF-like, Src Homology 3 domain of G	1e-10
cd11836	55	cd11836, SH3_Intersectin_1, First Src homology 3 d	2e-10
cd11971	59	cd11971, SH3_Abi1, Src homology 3 domain of Abl In	2e-10
cd11815	52	cd11815, SH3_Eve1_2, Second Src homology 3 domain	4e-10
cd11935	58	cd11935, SH3_Nebulette_C, C-terminal Src Homology	5e-10
cd11995	54	cd11995, SH3_Intersectin1_5, Fifth Src homology 3	5e-10
cd11843	53	cd11843, SH3_PACSIN, Src homology 3 domain of Prot	6e-10
cd11812	52	cd11812, SH3_AHI-1, Src Homology 3 domain of Abels	6e-10
cd11786	53	cd11786, SH3_SH3RF_1, First Src Homology 3 domain	7e-10
cd11818	50	cd11818, SH3_Eve1_5, Fifth Src homology 3 domain o	7e-10
cd11778	51	cd11778, SH3_Bzz1_2, Second Src Homology 3 domain	7e-10
cd11828	53	cd11828, SH3_ARHGEF9_like, Src homology 3 domain o	1e-09
cd12142	55	cd12142, SH3_D21-like, Src Homology 3 domain of SH	2e-09
cd11970	60	cd11970, SH3_PLCgamma1, Src homology 3 domain of P	2e-09
cd11824	53	cd11824, SH3_PSTPIP1, Src homology 3 domain of Pro	2e-09
cd11781	53	cd11781, SH3_Sorbs_1, First Src Homology 3 domain	2e-09
cd11964	55	cd11964, SH3_STAM1, Src homology 3 domain of Signa	2e-09
cd11996	54	cd11996, SH3_Intersectin2_5, Fifth Src homology 3	3e-09
cd11816	51	cd11816, SH3_Eve1_3, Third Src homology 3 domain o	3e-09
cd11875	55	cd11875, SH3_CD2AP-like_3, Third Src Homology 3 do	4e-09
cd11780	55	cd11780, SH3_Sorbs_3, Third (or C-terminal) Src Ho	4e-09
cd12052	53	cd12052, SH3_CIN85_1, First Src Homology 3 domain	4e-09
cd11934	59	cd11934, SH3_Lasp1_C, C-terminal Src Homology 3 do	6e-09
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	7e-09
cd12000	57	cd12000, SH3_CASS4, Src homology 3 domain of CAS (	8e-09
cd11963	57	cd11963, SH3_STAM2, Src homology 3 domain of Signa	1e-08
cd12059	58	cd12059, SH3_MLK1-3, Src Homology 3 domain of Mixe	1e-08
cd11841	54	cd11841, SH3_SH3YL1_like, Src homology 3 domain of	1e-08
pfam07653	53	pfam07653, SH3_2, Variant SH3 domain	1e-08
cd11796	51	cd11796, SH3_DNMBP_N3, Third N-terminal Src homolo	2e-08
cd11817	50	cd11817, SH3_Eve1_4, Fourth Src homology 3 domain	2e-08
cd11972	61	cd11972, SH3_Abi2, Src homology 3 domain of Abl In	3e-08
cd11833	53	cd11833, SH3_Stac_1, First C-terminal Src homology	3e-08
cd11874	53	cd11874, SH3_CD2AP-like_2, Second Src Homology 3 d	5e-08
cd11842	55	cd11842, SH3_Ysc84p_like, Src homology 3 domain of	5e-08
cd11951	53	cd11951, SH3_GRAP_C, C-terminal Src homology 3 dom	8e-08
cd12057	56	cd12057, SH3_CIN85_3, Third Src Homology 3 domain	9e-08
cd11969	55	cd11969, SH3_PLCgamma2, Src homology 3 domain of P	1e-07
cd11762	57	cd11762, SH3_FCHSD_2, Second Src Homology 3 domain	1e-07
cd12051	56	cd12051, SH3_DOCK1_5_A, Src Homology 3 domain of C	1e-07
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	1e-07
cd12058	58	cd12058, SH3_MLK4, Src Homology 3 domain of Mixed	1e-07
cd11902	55	cd11902, SH3_Nck2_2, Second Src Homology 3 domain	2e-07
cd11809	53	cd11809, SH3_srGAP, Src homology 3 domain of Slit-	2e-07
cd11837	53	cd11837, SH3_Intersectin_2, Second Src homology 3	2e-07
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	2e-07
cd11821	53	cd11821, SH3_ASAP, Src homology 3 domain of ArfGAP	3e-07
cd12046	53	cd12046, SH3_p67phox_C, C-terminal (or second) Src	3e-07
cd11838	52	cd11838, SH3_Intersectin_3, Third Src homology 3 d	3e-07
cd11887	60	cd11887, SH3_Bbc1, Src Homology 3 domain of Bbc1 a	3e-07
cd11876	58	cd11876, SH3_MLK, Src Homology 3 domain of Mixed L	3e-07
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-07
cd11763	55	cd11763, SH3_SNX9_like, Src Homology 3 domain of S	4e-07
cd12054	55	cd12054, SH3_CD2AP_2, Second Src Homology 3 domain	6e-07
cd11813	53	cd11813, SH3_SGSM3, Src Homology 3 domain of Small	7e-07
cd11844	56	cd11844, SH3_CAS, Src homology 3 domain of CAS (Cr	8e-07
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	9e-07
cd11804	52	cd11804, SH3_GRB2_like_N, N-terminal Src homology	9e-07
cd11870	53	cd11870, SH3_p67phox-like_C, C-terminal Src Homolo	9e-07
cd11986	53	cd11986, SH3_Stac3_1, First C-terminal Src homolog	9e-07
cd11901	55	cd11901, SH3_Nck1_2, Second Src Homology 3 domain	1e-06
cd11830	54	cd11830, SH3_VAV_2, C-terminal (or second) Src hom	1e-06
cd12056	57	cd12056, SH3_CD2AP_3, Third Src Homology 3 domain	1e-06
cd12061	54	cd12061, SH3_betaPIX, Src Homology 3 domain of bet	1e-06
cd11920	55	cd11920, SH3_Sorbs2_1, First Src Homology 3 domain	1e-06
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	1e-06
cd11787	53	cd11787, SH3_SH3RF_2, Second Src Homology 3 domain	2e-06
cd11790	64	cd11790, SH3_Amphiphysin, Src Homology 3 domain of	2e-06
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	3e-06
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-06
cd11927	54	cd11927, SH3_SH3RF1_1, First Src Homology 3 domain	3e-06
cd11916	59	cd11916, SH3_Sorbs1_3, Third (or C-terminal) Src H	3e-06
cd12055	53	cd12055, SH3_CIN85_2, Second Src Homology 3 domain	3e-06
cd11928	54	cd11928, SH3_SH3RF3_1, First Src Homology 3 domain	3e-06
cd11956	55	cd11956, SH3_srGAP4, Src homology 3 domain of Slit	3e-06
cd11835	54	cd11835, SH3_ARHGAP32_33, Src homology 3 domain of	3e-06
cd11856	53	cd11856, SH3_p47phox_like, Src homology 3 domains	3e-06
cd11845	52	cd11845, SH3_Src_like, Src homology 3 domain of Sr	4e-06
cd11948	54	cd11948, SH3_GRAP_N, N-terminal Src homology 3 dom	4e-06
cd11990	52	cd11990, SH3_Intersectin2_2, Second Src homology 3	4e-06
cd12047	53	cd12047, SH3_Noxa1_C, C-terminal Src Homology 3 do	4e-06
cd11989	52	cd11989, SH3_Intersectin1_2, Second Src homology 3	4e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-06
cd11952	56	cd11952, SH3_iASPP, Src Homology 3 (SH3) domain of	6e-06
cd12003	62	cd12003, SH3_EFS, Src homology 3 domain of CAS (Cr	6e-06
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	1e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	1e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-05
cd11872	56	cd11872, SH3_DOCK_AB, Src Homology 3 domain of Cla	1e-05
cd12013	61	cd12013, SH3_RIM-BP_3, Third Src homology 3 domain	1e-05
cd11985	53	cd11985, SH3_Stac2_C, C-terminal Src homology 3 do	1e-05
cd11767	56	cd11767, SH3_Nck_3, Third Src Homology 3 domain of	1e-05
cd11849	53	cd11849, SH3_SPIN90, Src homology 3 domain of SH3	1e-05
cd11782	53	cd11782, SH3_Sorbs_2, Second Src Homology 3 domain	1e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-05
cd11976	54	cd11976, SH3_VAV1_2, C-terminal (or second) Src ho	2e-05
cd11998	56	cd11998, SH3_PACSIN1-2, Src homology 3 domain of P	2e-05
cd11771	60	cd11771, SH3_Pex13p_fungal, Src Homology 3 domain	2e-05
cd11783	55	cd11783, SH3_SH3RF_3, Third Src Homology 3 domain	2e-05
cd12002	57	cd12002, SH3_NEDD9, Src homology 3 domain of CAS (	2e-05
cd11774	52	cd11774, SH3_Sla1p_2, Second Src Homology 3 domain	2e-05
cd11988	57	cd11988, SH3_Intersectin2_1, First Src homology 3	2e-05
cd12060	58	cd12060, SH3_alphaPIX, Src Homology 3 domain of al	2e-05
cd12001	68	cd12001, SH3_BCAR1, Src homology 3 domain of the C	2e-05
cd11839	58	cd11839, SH3_Intersectin_4, Fourth Src homology 3	2e-05
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	3e-05
cd11991	52	cd11991, SH3_Intersectin1_3, Third Src homology 3	3e-05
cd11791	59	cd11791, SH3_UBASH3, Src homology 3 domain of Ubiq	3e-05
cd11978	56	cd11978, SH3_VAV3_2, C-terminal (or second) Src ho	3e-05
cd11977	58	cd11977, SH3_VAV2_2, C-terminal (or second) Src ho	3e-05
cd11797	50	cd11797, SH3_DNMBP_N4, Fourth N-terminal Src homol	3e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-05
pfam02841	297	pfam02841, GBP_C, Guanylate-binding protein, C-ter	4e-05
pfam09731	493	pfam09731, Mitofilin, Mitochondrial inner membrane	4e-05
cd11884	56	cd11884, SH3_MYO15, Src Homology 3 domain of Myosi	4e-05
cd11855	55	cd11855, SH3_Sho1p, Src homology 3 domain of High	6e-05
cd11769	57	cd11769, SH3_CSK, Src Homology 3 domain of C-termi	6e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	7e-05
cd11806	53	cd11806, SH3_PRMT2, Src homology 3 domain of Prote	7e-05
cd11829	52	cd11829, SH3_GAS7, Src homology 3 domain of Growth	7e-05
cd11919	55	cd11919, SH3_Sorbs1_1, First Src Homology 3 domain	8e-05
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	8e-05
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	9e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
cd11987	55	cd11987, SH3_Intersectin1_1, First Src homology 3	1e-04
cd11773	57	cd11773, SH3_Sla1p_1, First Src Homology 3 domain	1e-04
cd12053	56	cd12053, SH3_CD2AP_1, First Src Homology 3 domain	1e-04
cd11947	52	cd11947, SH3_GRAP2_N, N-terminal Src homology 3 do	1e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-04
cd11999	56	cd11999, SH3_PACSIN_like, Src homology 3 domain of	1e-04
cd12007	58	cd12007, SH3_Yes, Src homology 3 domain of Yes Pro	1e-04
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	2e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	2e-04
cd11946	56	cd11946, SH3_GRB2_N, N-terminal Src homology 3 dom	2e-04
cd11929	54	cd11929, SH3_SH3RF2_1, First Src Homology 3 domain	2e-04
cd12012	62	cd12012, SH3_RIM-BP_2, Second Src homology 3 domai	2e-04
cd11912	55	cd11912, SH3_Bzz1_1, First Src Homology 3 domain o	2e-04
pfam09756	189	pfam09756, DDRGK, DDRGK domain	2e-04
cd11864	58	cd11864, SH3_PEX13_eumet, Src Homology 3 domain of	2e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-04
cd11997	56	cd11997, SH3_PACSIN3, Src homology 3 domain of Pro	3e-04
PRK05771	646	PRK05771, PRK05771, V-type ATP synthase subunit I;	3e-04
COG2433	652	COG2433, COG2433, Uncharacterized conserved protei	3e-04
cd11883	55	cd11883, SH3_Sdc25, Src Homology 3 domain of Sdc25	3e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-04
pfam09756	189	pfam09756, DDRGK, DDRGK domain	4e-04
cd11894	56	cd11894, SH3_FCHSD2_2, Second Src Homology 3 domai	4e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-04
cd11869	54	cd11869, SH3_p40phox, Src Homology 3 domain of the	4e-04
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	4e-04
cd11973	73	cd11973, SH3_ASEF, Src homology 3 domain of APC-St	4e-04
pfam10211	189	pfam10211, Ax_dynein_light, Axonemal dynein light	4e-04
cd11924	56	cd11924, SH3_Vinexin_2, Second Src Homology 3 doma	4e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	5e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	5e-04
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	5e-04
cd11921	55	cd11921, SH3_Vinexin_1, First Src Homology 3 domai	5e-04
cd11784	55	cd11784, SH3_SH3RF2_3, Third Src Homology 3 domain	5e-04
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	6e-04
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	6e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-04
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	6e-04
cd11768	54	cd11768, SH3_Tec_like, Src Homology 3 domain of Te	6e-04
cd12064	56	cd12064, SH3_GRAF, Src Homology 3 domain of GTPase	6e-04
cd11851	62	cd11851, SH3_RIM-BP, Src homology 3 domains of Rab	7e-04
cd11975	62	cd11975, SH3_ARHGEF9, Src homology 3 domain of the	7e-04
COG3064	387	COG3064, TolA, Membrane protein involved in colici	7e-04
cd11930	55	cd11930, SH3_SH3RF1_2, Second Src Homology 3 domai	7e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	8e-04
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	8e-04
COG1269	660	COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su	8e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	9e-04
cd11895	58	cd11895, SH3_FCHSD1_2, Second Src Homology 3 domai	9e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
cd11808	53	cd11808, SH3_Alpha_Spectrin, Src homology 3 domain	0.001
cd11965	57	cd11965, SH3_ASAP1, Src homology 3 domain of ArfGA	0.001
cd11758	55	cd11758, SH3_CRK_N, N-terminal Src Homology 3 doma	0.001
cd12006	56	cd12006, SH3_Fyn_Yrk, Src homology 3 domain of Fyn	0.001
cd11917	61	cd11917, SH3_Sorbs2_3, Third (or C-terminal) Src H	0.001
cd11761	57	cd11761, SH3_FCHSD_1, First Src Homology 3 domain	0.001
TIGR02794	346	TIGR02794, tolA_full, TolA protein	0.001
cd11955	53	cd11955, SH3_srGAP1-3, Src homology 3 domain of Sl	0.001
pfam05262	489	pfam05262, Borrelia_P83, Borrelia P83/100 protein	0.001
cd11918	58	cd11918, SH3_Vinexin_3, Third (or C-terminal) Src	0.001
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.002
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	0.002
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	0.002
cd12016	54	cd12016, SH3_Tks_2, Second Src homology 3 domain o	0.002
cd11926	55	cd11926, SH3_SH3RF1_3, Third Src Homology 3 domain	0.002
cd12141	57	cd12141, SH3_DNMBP_C2, Second C-terminal Src homol	0.002
cd11992	52	cd11992, SH3_Intersectin2_3, Third Src homology 3	0.002
cd12066	55	cd12066, SH3_GRAF3, Src Homology 3 domain of GTPas	0.002
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	0.003
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	0.003
pfam05262	489	pfam05262, Borrelia_P83, Borrelia P83/100 protein	0.003
cd11807	57	cd11807, SH3_ASPP, Src homology 3 domain of Apopto	0.003
pfam12072	201	pfam12072, DUF3552, Domain of unknown function (DU	0.003
PTZ00108	1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	0.003
cd11925	57	cd11925, SH3_SH3RF3_3, Third Src Homology 3 domain	0.003
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	0.003
cd12008	56	cd12008, SH3_Src, Src homology 3 domain of Src Pro	0.003
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.004
COG3064	387	COG3064, TolA, Membrane protein involved in colici	0.004
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	0.004
TIGR02794	346	TIGR02794, tolA_full, TolA protein	0.004
COG2268	548	COG2268, COG2268, Uncharacterized protein conserve	0.004
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	0.004
cd11931	55	cd11931, SH3_SH3RF3_2, Second Src Homology 3 domai	0.004
PHA03369	663	PHA03369, PHA03369, capsid maturational protease;	0.004
cd11801	55	cd11801, SH3_JIP1_like, Src homology 3 domain of J	0.004
pfam05236	255	pfam05236, TAF4, Transcription initiation factor T	0.004
pfam10359	470	pfam10359, Fmp27_WPPW, RNA pol II promoter Fmp27 p	0.004

>gnl|CDD|212892 cd11959, SH3_Cortactin, Src homology 3 domain of Cortactin

 Score =  120 bits (303), Expect = 2e-33
 Identities = 47/53 (88%), Positives = 49/53 (92%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           TAVALYDYQA+ DDEISFDPDDIITNIEMIDEGWWRG C G+YGLFPANYV L
Sbjct: 1   TAVALYDYQAADDDEISFDPDDIITNIEMIDEGWWRGVCRGKYGLFPANYVEL 53

Cortactin was originally identified as a substrate of Src kinase. It is an actin regulatory protein that binds to the Arp2/3 complex and stabilizes branched actin filaments. It is involved in cellular processes that affect cell motility, adhesion, migration, endocytosis, and invasion. It is expressed ubiquitously except in hematopoietic cells, where the homolog hematopoietic lineage cell-specific 1 (HS1) is expressed instead. Cortactin contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region interacts with the Arp2/3 complex and F-actin, and is crucial in regulating branched actin assembly. Cortactin also serves as a scaffold and provides a bridge to the actin cytoskeleton for membrane trafficking and signaling proteins that bind to its SH3 domain. Binding partners for the SH3 domain of cortactin include dynamin2, N-WASp, MIM, FGD1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|213006 cd12073, SH3_HS1, Src homology 3 domain of Hematopoietic lineage cell-specific protein 1

 Score =  104 bits (261), Expect = 1e-27
 Identities = 39/53 (73%), Positives = 43/53 (81%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ 524
           AVALYDYQ   DDEISFDP + IT+IEM+DEGWW+G CHG  GLFPANYV L 
Sbjct: 3   AVALYDYQGEGDDEISFDPQETITDIEMVDEGWWKGTCHGHRGLFPANYVELL 55

HS1, also called HCLS1 (hematopoietic cell-specific Lyn substrate 1), is a cortactin homolog expressed specifically in hematopoietic cells. It is an actin regulatory protein that binds the Arp2/3 complex and stabilizes branched actin filaments. It is required for cell spreading and signaling in lymphocytes. It regulates cytoskeletal remodeling that controls lymphocyte trafficking, and it also affects tissue invasion and infiltration of leukemic B cells. Like cortactin, HS1 contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region binds the Arp2/3 complex and F-actin, while the C-terminal region acts as an adaptor or scaffold that can connect varied proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212893 cd11960, SH3_Abp1_eu, Src homology 3 domain of eumetazoan Actin-binding protein 1

 Score =  101 bits (254), Expect = 1e-26
 Identities = 40/54 (74%), Positives = 42/54 (77%), Gaps = 1/54 (1%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC-HGQYGLFPANYVSL 523
            A ALYDYQA+ D EISFDP DIIT+IE IDEGWWRG    G YGLFPANYV L
Sbjct: 1   RARALYDYQAADDTEISFDPGDIITDIEQIDEGWWRGTGPDGTYGLFPANYVEL 54

Abp1, also called drebrin-like protein, is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a helical domain, and a C-terminal SH3 domain. Mammalian Abp1, unlike yeast Abp1, does not contain an acidic domain that interacts with the Arp2/3 complex. It regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. Abp1 deficiency causes abnormal organ structure and function of the spleen, heart, and lung of mice. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212753 cd11819, SH3_Cortactin_like, Src homology 3 domain of Cortactin and related proteins

 Score =  101 bits (254), Expect = 2e-26
 Identities = 37/54 (68%), Positives = 39/54 (72%), Gaps = 1/54 (1%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC-HGQYGLFPANYVSL 523
            A ALYDYQA+ D+EISF   DIIT IE IDEGWW G    GQ GLFPANYV L
Sbjct: 1   RAKALYDYQAAEDNEISFVEGDIITQIEQIDEGWWLGVNAKGQKGLFPANYVEL 54

This subfamily includes cortactin, Abp1 (actin-binding protein 1), hematopoietic lineage cell-specific protein 1 (HS1), and similar proteins. These proteins are involved in regulating actin dynamics through direct or indirect interaction with the Arp2/3 complex, which is required to initiate actin polymerization. They all contain at least one C-terminal SH3 domain. Cortactin and HS1 bind Arp2/3 and actin through an N-terminal region that contains an acidic domain and several copies of a repeat domain found in cortactin and HS1. Abp1 binds actin via an N-terminal actin-depolymerizing factor (ADF) homology domain. Yeast Abp1 binds Arp2/3 directly through two acidic domains. Mammalian Abp1 does not directly interact with Arp2/3; instead, it regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. The C-terminal region of these proteins acts as an adaptor or scaffold that can connect membrane trafficking and signaling proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|214620 smart00326, SH3, Src homology 3 domains

 Score = 80.3 bits (199), Expect = 5e-19
 Identities = 29/54 (53%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH-GQYGLFPANYV 521
           G    ALYDY A   DE+SF   DIIT +E  D+GWW+G    G+ GLFP+NYV
Sbjct: 2   GPQVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYV 55

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations. Length = 56

>gnl|CDD|212690 cd00174, SH3, Src Homology 3 domain superfamily

 Score = 79.8 bits (198), Expect = 7e-19
 Identities = 30/51 (58%), Positives = 36/51 (70%), Gaps = 1/51 (1%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH-GQYGLFPANY 520
            A ALYDY+A  DDE+SF   DIIT +E  D+GWW G  + G+ GLFPANY
Sbjct: 1   YARALYDYEAQDDDELSFKKGDIITVLEKDDDGWWEGELNGGREGLFPANY 51

Src Homology 3 (SH3) domains are protein interaction domains that bind proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. Thus, they are referred to as proline-recognition domains (PRDs). SH3 domains are less selective and show more diverse specificity compared to other PRDs. They have been shown to bind peptide sequences that lack the PxxP motif; examples include the PxxDY motif of Eps8 and the RKxxYxxY sequence in SKAP55. SH3 domain containing proteins play versatile and diverse roles in the cell, including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies, among others. Many members of this superfamily are adaptor proteins that associate with a number of protein partners, facilitating complex formation and signal transduction. Length = 51

>gnl|CDD|212894 cd11961, SH3_Abp1_fungi_C2, Second C-terminal Src homology 3 domain of Fungal Actin-binding protein 1

 Score = 76.4 bits (188), Expect = 1e-17
 Identities = 31/53 (58%), Positives = 38/53 (71%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
            A ALYDY A+ D+E+SF  +D I NIE +D+ WW G CHG  GLFP+NYV L
Sbjct: 1   WAKALYDYDAAEDNELSFFENDKIINIEFVDDDWWLGECHGSRGLFPSNYVEL 53

Abp1 is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a central proline-rich region, and a C-terminal SH3 domain (many yeast Abp1 proteins contain two C-terminal SH3 domains). Yeast Abp1 also contains two acidic domains that bind directly to the Arp2/3 complex, which is required to initiate actin polymerization. The SH3 domain of yeast Abp1 binds and localizes the kinases, Ark1p and Prk1p, which facilitate actin patch disassembly following vesicle internalization. It also mediates the localization to the actin patch of the synaptojanin-like protein, Sjl2p, which plays a key role in endocytosis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|202162 pfam02218, HS1_rep, Repeat in HS1/Cortactin

 Score = 72.1 bits (177), Expect = 3e-16
 Identities = 32/37 (86%), Positives = 35/37 (94%)

Query: 158 GFGGKFGVQKDRQDKSAVGWDHQEKIEKHESQKDYAK 194
           GFGGKFGVQKDRQDKSAVG+D+Q K EKHESQKDY+K
Sbjct: 1   GFGGKFGVQKDRQDKSAVGFDYQGKTEKHESQKDYSK 37

The function of this repeat is unknown. Seven copies are found in cortactin and four copies are found in HS1. The repeats are always found amino terminal to an SH3 domain pfam00018. Length = 37

>gnl|CDD|212723 cd11789, SH3_Nebulin_family_C, C-terminal Src Homology 3 domain of the Nebulin family of proteins

 Score = 68.5 bits (168), Expect = 7e-15
 Identities = 27/51 (52%), Positives = 35/51 (68%), Gaps = 2/51 (3%)

Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYV 521
            A+YDY A+ DDE+SF   D+I N+E+ID+GW  G     GQ G+ PANYV
Sbjct: 3   RAMYDYAAADDDEVSFQEGDVIINVEIIDDGWMEGTVQRTGQSGMLPANYV 53

Nebulin family proteins contain multiple nebulin repeats, and may contain an N-terminal LIM domain and/or a C-terminal SH3 domain. They have molecular weights ranging from 34 to 900 kD, depending on the number of nebulin repeats, and they all bind actin. They are involved in the regulation of actin filament architecture and function as stabilizers and scaffolds for cytoskeletal structures with which they associate, such as long actin filaments or focal adhesions. Nebulin family proteins that contain a C-terminal SH3 domain include the giant filamentous protein nebulin, nebulette, Lasp1, and Lasp2. Lasp2, also called LIM-nebulette, is an alternatively spliced variant of nebulette. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212759 cd11825, SH3_PLCgamma, Src homology 3 domain of Phospholipase C (PLC) gamma

 Score = 67.0 bits (164), Expect = 3e-14
 Identities = 29/52 (55%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQY-GLFPANYV 521
           T  ALYDY+A   DE+SF    IITN+E  D GWWRG   G+    FPANYV
Sbjct: 1   TVKALYDYRAQRPDELSFCKHAIITNVEKEDGGWWRGDYGGKKQKWFPANYV 52

PLC catalyzes the hydrolysis of phosphatidylinositol (4,5)-bisphosphate [PtdIns(4,5)P2] to produce Ins(1,4,5)P3 and diacylglycerol (DAG) in response to various receptors. Ins(1,4,5)P3 initiates the calcium signaling cascade while DAG functions as an activator of PKC. PLCgamma catalyzes this reaction in tyrosine kinase-dependent signaling pathways. It is activated and recruited to its substrate at the membrane. Vertebrates contain two forms of PLCgamma, PLCgamma1, which is widely expressed, and PLCgamma2, which is primarily found in haematopoietic cells. PLCgamma contains a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, two catalytic regions of PLC domains that flank two tandem SH2 domains, followed by a SH3 domain and C2 domain. The SH3 domain of PLCgamma1 directly interacts with dynamin-1 and can serve as a guanine nucleotide exchange factor (GEF). It also interacts with Cbl, inhibiting its phosphorylation and activity. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212757 cd11823, SH3_Nostrin, Src homology 3 domain of Nitric Oxide Synthase TRaffic INducer

 Score = 63.9 bits (156), Expect = 3e-13
 Identities = 25/49 (51%), Positives = 32/49 (65%)

Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
            ALY Y A+ +DE+S  P DII   E  D+GWW G  +G+ G+FPA YV
Sbjct: 3   KALYSYTANREDELSLQPGDIIEVHEKQDDGWWLGELNGKKGIFPATYV 51

Nostrin is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). It facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of Nostrin may be correlated to preeclampsia. Nostrin contains an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212739 cd11805, SH3_GRB2_like_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 63.8 bits (156), Expect = 3e-13
 Identities = 22/49 (44%), Positives = 29/49 (59%)

Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS 522
           ALYD+      E+ F   DIIT ++  D  WW+G   G+ G+FPANYV 
Sbjct: 4   ALYDFNPQEPGELEFRRGDIITVLDSSDPDWWKGELRGRVGIFPANYVQ 52

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The C-terminal SH3 domains (SH3c) of GRB2 and GRAP2 have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212706 cd11772, SH3_OSTF1, Src Homology 3 domain of metazoan osteoclast stimulating factor 1

 Score = 63.9 bits (156), Expect = 3e-13
 Identities = 22/48 (45%), Positives = 31/48 (64%)

Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           ALYDY+A   DE+SF+  D++   +  D  WW+  C G+ GL P+NYV
Sbjct: 4   ALYDYEAQHPDELSFEEGDLLYISDKSDPNWWKATCGGKTGLIPSNYV 51

OSTF1, also named OSF or SH3P2, is a signaling protein containing SH3 and ankyrin-repeat domains. It acts through a Src-related pathway to enhance the formation of osteoclasts and bone resorption. It also acts as a negative regulator of cell motility. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|202162 pfam02218, HS1_rep, Repeat in HS1/Cortactin

 Score = 62.0 bits (151), Expect = 8e-13
 Identities = 26/37 (70%), Positives = 29/37 (78%)

Query: 121 GFGGKFGVQNDRVDKSAVTWDHKEVIEKHASQKDYSS 157
           GFGGKFGVQ DR DKSAV +D++   EKH SQKDYS 
Sbjct: 1   GFGGKFGVQKDRQDKSAVGFDYQGKTEKHESQKDYSK 37

The function of this repeat is unknown. Seven copies are found in cortactin and four copies are found in HS1. The repeats are always found amino terminal to an SH3 domain pfam00018. Length = 37

>gnl|CDD|215659 pfam00018, SH3_1, SH3 domain

 Score = 62.6 bits (153), Expect = 8e-13
 Identities = 24/47 (51%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH-GQYGLFPA 518
           VALYDY A   DE+SF   DII  +E  D+GWW+G    G+ GL P+
Sbjct: 1   VALYDYTAREPDELSFKKGDIIIVLEKSDDGWWKGRLKGGKEGLIPS 47

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 47

>gnl|CDD|212774 cd11840, SH3_Intersectin_5, Fifth Src homology 3 domain (or SH3E) of Intersectin

 Score = 62.4 bits (152), Expect = 9e-13
 Identities = 25/49 (51%), Positives = 32/49 (65%)

Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           +AL+ Y A  +DE+SF   DII  +   D  WWRG  +GQ GLFP+NYV
Sbjct: 3   IALFPYTAQNEDELSFQKGDIINVLSKDDPDWWRGELNGQTGLFPSNYV 51

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212810 cd11877, SH3_PIX, Src Homology 3 domain of Pak Interactive eXchange factors

 Score = 62.3 bits (152), Expect = 1e-12
 Identities = 21/48 (43%), Positives = 35/48 (72%)

Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           A ++++ + +DE+SFD  DIIT  ++++ GWW G  +G+ G FP+NYV
Sbjct: 4   AKFNFEGTNEDELSFDKGDIITVTQVVEGGWWEGTLNGKTGWFPSNYV 51

PIX proteins are Rho guanine nucleotide exchange factors (GEFs), which activate small GTPases by exchanging bound GDP for free GTP. They act as GEFs for both Cdc42 and Rac 1, and have been implicated in cell motility, adhesion, neurite outgrowth, and cell polarity. Vertebrates contain two proteins from the PIX subfamily, alpha-PIX and beta-PIX. Alpha-PIX, also called ARHGEF6, is localized in dendritic spines where it regulates spine morphogenesis. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. Beta-PIX play roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212700 cd11766, SH3_Nck_2, Second Src Homology 3 domain of Nck adaptor proteins

 Score = 62.3 bits (152), Expect = 1e-12
 Identities = 23/52 (44%), Positives = 34/52 (65%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS 522
            AV  ++Y+A  +DE+S    D +  +E   +GWWRG C+GQ G FP+NYV+
Sbjct: 1   PAVVKFNYEAQREDELSLRKGDRVLVLEKSSDGWWRGECNGQVGWFPSNYVT 52

Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|202162 pfam02218, HS1_rep, Repeat in HS1/Cortactin

 Score = 61.3 bits (149), Expect = 2e-12
 Identities = 24/34 (70%), Positives = 30/34 (88%)

Query: 195 GFGGKFGIESDRQDKSAVGWDHVEKVDKHQSQKD 228
           GFGGKFG++ DRQDKSAVG+D+  K +KH+SQKD
Sbjct: 1   GFGGKFGVQKDRQDKSAVGFDYQGKTEKHESQKD 34

The function of this repeat is unknown. Seven copies are found in cortactin and four copies are found in HS1. The repeats are always found amino terminal to an SH3 domain pfam00018. Length = 37

>gnl|CDD|212760 cd11826, SH3_Abi, Src homology 3 domain of Abl Interactor proteins

 Score = 61.2 bits (149), Expect = 3e-12
 Identities = 27/49 (55%), Positives = 32/49 (65%)

Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           VALYDY A  DDE+SF   DII   +  D+GW+ G  +G  GLFP NYV
Sbjct: 3   VALYDYTADKDDELSFQEGDIIYVTKKNDDGWYEGVLNGVTGLFPGNYV 51

Abl interactor (Abi) proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. They localize to sites of actin polymerization in epithelial adherens junction and immune synapses, as well as to the leading edge of lamellipodia. Vertebrates contain two Abi proteins, Abi1 and Abi2. Abi1 displays a wide expression pattern while Abi2 is highly expressed in the eye and brain. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212754 cd11820, SH3_STAM, Src homology 3 domain of Signal Transducing Adaptor Molecules

 Score = 61.3 bits (149), Expect = 3e-12
 Identities = 23/49 (46%), Positives = 35/49 (71%)

Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS 522
           ALYD++A+ D+E++F   +IIT ++  D  WW+G  H   GLFPAN+V+
Sbjct: 5   ALYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGSNHRGEGLFPANFVT 53

STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. There are two vertebrate STAMs, STAM1 and STAM2, which may be functionally redundant; vertebrate STAMs contain ITAM motifs. They are part of the endosomal sorting complex required for transport (ESCRT-0). STAM2 deficiency in mice did not cause any obvious abnormality, while STAM1 deficiency resulted in growth retardation. Loss of both STAM1 and STAM2 in mice proved lethal, indicating that STAMs are important for embryonic development. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212806 cd11873, SH3_CD2AP-like_1, First Src Homology 3 domain (SH3A) of CD2-associated protein and similar proteins

 Score = 60.7 bits (148), Expect = 4e-12
 Identities = 21/51 (41%), Positives = 33/51 (64%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
             +  +DY A   DE++    DIITN++ ++EGWW G  +G+ G+FP N+V
Sbjct: 1   EVIVEFDYDAEEPDELTLKVGDIITNVKKMEEGWWEGTLNGKRGMFPDNFV 51

This subfamily is composed of the first SH3 domain (SH3A) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3A of both proteins bind to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic domain of the cell adhesion protein CD2. CIN85 SH3A binds to internal proline-rich motifs within the proline-rich region; this intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. CIN85 SH3A has also been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212883 cd11950, SH3_GRAP2_C, C-terminal Src homology 3 domain of GRB2-related adaptor protein 2

 Score = 60.6 bits (147), Expect = 4e-12
 Identities = 24/50 (48%), Positives = 34/50 (68%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
             ALYD++A  DDE+ F+  D+I  ++  +  WW+G  HG+ GLFPANYV
Sbjct: 2   VRALYDFEALEDDELGFNSGDVIEVLDSSNPSWWKGRLHGKLGLFPANYV 51

GRAP2 is also called GADS (GRB2-related adapter downstream of Shc), GrpL, GRB2L, Mona, or GRID (Grb2-related protein with insert domain). It is expressed specifically in the hematopoietic system. It plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. It also has roles in antigen-receptor and tyrosine kinase mediated signaling. GRAP2 is unique from other GRB2-like adaptor proteins in that it can be regulated by caspase cleavage. It contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRAP2 binds to different motifs found in substrate peptides including the typical PxxP motif in hematopoietic progenitor kinase 1 (HPK1), the RxxK motif in SLP-76 and HPK1, and the RxxxxK motif in phosphatase-like protein HD-PTP. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212895 cd11962, SH3_Abp1_fungi_C1, First C-terminal Src homology 3 domain of Fungal Actin-binding protein 1

 Score = 60.6 bits (147), Expect = 5e-12
 Identities = 29/53 (54%), Positives = 36/53 (67%), Gaps = 1/53 (1%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYVSL 523
           AV LYDY+   D+EI     +I+TNIEM+DE WW G    G+ GLFP+NYV L
Sbjct: 2   AVVLYDYEKDEDNEIELVEGEIVTNIEMVDEDWWMGTNSKGESGLFPSNYVEL 54

Abp1 is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a central proline-rich region, and a C-terminal SH3 domain (many yeast Abp1 proteins contain two C-terminal SH3 domains). Yeast Abp1 also contains two acidic domains that bind directly to the Arp2/3 complex, which is required to initiate actin polymerization. The SH3 domain of yeast Abp1 binds and localizes the kinases, Ark1p and Prk1p, which facilitate actin patch disassembly following vesicle internalization. It also mediates the localization to the actin patch of the synaptojanin-like protein, Sjl2p, which plays a key role in endocytosis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212882 cd11949, SH3_GRB2_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2

 Score = 59.9 bits (145), Expect = 8e-12
 Identities = 22/52 (42%), Positives = 30/52 (57%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS 522
              AL+D+    D E+ F   D I  ++  D  WW+G CHGQ G+FP NYV+
Sbjct: 1   YVQALFDFDPQEDGELGFRRGDFIEVMDNSDPNWWKGACHGQTGMFPRNYVT 52

GRB2 is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. It is ubiquitously expressed in all tissues throughout development and is important in cell cycle progression, motility, morphogenesis, and angiogenesis. In lymphocytes, GRB2 is associated with antigen receptor signaling components. GRB2 contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRB2 binds to Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, as well as to the proline-rich C-terminus of FGRF2. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212761 cd11827, SH3_MyoIe_If_like, Src homology 3 domain of Myosins Ie, If, and similar proteins

 Score = 59.4 bits (144), Expect = 1e-11
 Identities = 24/48 (50%), Positives = 29/48 (60%)

Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           ALY Y A   DE+SF+  DII  ++    GWW G   G+ GLFP NYV
Sbjct: 4   ALYAYDAQDTDELSFNEGDIIEILKEDPSGWWTGRLRGKEGLFPGNYV 51

Myosins Ie (MyoIe) and If (MyoIf) are nonmuscle, unconventional, long tailed, class I myosins containing an N-terminal motor domain and a myosin tail with TH1, TH2, and SH3 domains. MyoIe interacts with the endocytic proteins, dynamin and synaptojanin-1, through its SH3 domain; it may play a role in clathrin-dependent endocytosis. In the kidney, MyoIe is critical for podocyte function and normal glomerular filtration. Mutations in MyoIe is associated with focal segmental glomerulosclerosis, a disease characterized by massive proteinuria and progression to end-stage kidney disease. MyoIf is predominantly expressed in the immune system; it plays a role in immune cell motility and innate immunity. Mutations in MyoIf may be associated with the loss of hearing. The MyoIf gene has also been found to be fused to the MLL (Mixed lineage leukemia) gene in infant acute myeloid leukemias (AML). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|202162 pfam02218, HS1_rep, Repeat in HS1/Cortactin

 Score = 58.2 bits (141), Expect = 2e-11
 Identities = 23/35 (65%), Positives = 28/35 (80%)

Query: 84  GYGGKFGVEKDRMDESAVGHDYVAQLHQHESQSDY 118
           G+GGKFGV+KDR D+SAVG DY  +  +HESQ DY
Sbjct: 1   GFGGKFGVQKDRQDKSAVGFDYQGKTEKHESQKDY 35

The function of this repeat is unknown. Seven copies are found in cortactin and four copies are found in HS1. The repeats are always found amino terminal to an SH3 domain pfam00018. Length = 37

>gnl|CDD|212737 cd11803, SH3_Endophilin_A, Src homology 3 domain of Endophilin-A

 Score = 58.4 bits (142), Expect = 3e-11
 Identities = 23/50 (46%), Positives = 29/50 (58%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
             ALYD++   + E+ F   DIIT    IDE W+ G  +GQ G FP NYV
Sbjct: 3   CRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMVNGQSGFFPVNYV 52

Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms (A1, A2, and A3). Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. They tubulate membranes and regulate calcium influx into neurons to trigger the activation of the endocytic machinery. They are also involved in the sorting of plasma membrane proteins, actin filament assembly, and the uncoating of clathrin-coated vesicles for fusion with endosomes. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212866 cd11933, SH3_Nebulin_C, C-terminal Src Homology 3 domain of Nebulin

 Score = 57.3 bits (138), Expect = 7e-11
 Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYV 521
           G +  A+YDY+A+ DDE+SF   D I N++ IDEGW  G     G+ G+ PANYV
Sbjct: 1   GKSFRAMYDYRAADDDEVSFKDGDTIVNVQTIDEGWMYGTVQRTGKTGMLPANYV 55

Nebulin is a giant filamentous protein (600-900 kD) that is expressed abundantly in skeletal muscle. It binds to actin thin filaments and regulates its assembly and function. Nebulin was thought to be part of a molecular ruler complex that is critical in determining the lengths of actin thin filaments in skeletal muscle since its length, which varies due to alternative splicing, correlates with the length of thin filaments in various muscle types. Recent studies indicate that nebulin regulates thin filament length by stabilizing the filaments and preventing depolymerization. Mutations in nebulin can cause nemaline myopathy, characterized by muscle weakness which can be severe and can lead to neonatal lethality. Nebulin contains an N-terminal LIM domain, many nebulin repeats/super repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212815 cd11882, SH3_GRAF-like, Src Homology 3 domain of GTPase Regulator Associated with Focal adhesion kinase and similar proteins

 Score = 56.5 bits (137), Expect = 1e-10
 Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDE-GWWRGYCHGQYGLFPANYVSL 523
            A ALY  +A  + E+SF+P  IITN++  DE GW  G  +G+ GL P NYV  
Sbjct: 1   RARALYACKAEDESELSFEPGQIITNVQPSDEPGWLEGTLNGRTGLIPENYVEF 54

This subfamily is composed of Rho GTPase activating proteins (GAPs) with similarity to GRAF. Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. Although vertebrates harbor four Rho GAPs in the GRAF subfamily including GRAF, GRAF2, GRAF3, and Oligophrenin-1 (OPHN1), only three are included in this model. OPHN1 contains the BAR, PH and GAP domains, but not the C-terminal SH3 domain. GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. GRAF influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase. GRAF2 regulates caspase-activated p21-activated protein kinase-2. The SH3 domain of GRAF and GRAF2 binds PKNbeta, a target of the small GTPase Rho. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 54

>gnl|CDD|212770 cd11836, SH3_Intersectin_1, First Src homology 3 domain (or SH3A) of Intersectin

 Score = 56.2 bits (136), Expect = 2e-10
 Identities = 26/55 (47%), Positives = 30/55 (54%), Gaps = 10/55 (18%)

Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDE------GWWRGYCHGQYGLFPANYVS 522
           ALY ++A   DEISF P DII     +DE      GW  G   G+ G FPANYV 
Sbjct: 4   ALYAFEARNPDEISFQPGDII----QVDESQVAEPGWLAGELKGKTGWFPANYVE 54

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The first SH3 domain (or SH3A) of ITSN1 has been shown to bind many proteins including Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212904 cd11971, SH3_Abi1, Src homology 3 domain of Abl Interactor 1

 Score = 56.2 bits (135), Expect = 2e-10
 Identities = 26/49 (53%), Positives = 32/49 (65%)

Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           VA+YDY    DDE+SF    II  I+  D+GW+ G C+G  GLFP NYV
Sbjct: 3   VAIYDYSKDKDDELSFMEGAIIYVIKKNDDGWYEGVCNGVTGLFPGNYV 51

Abi1, also called e3B1, is a central regulator of actin cytoskeletal reorganization through interactions with many protein complexes. It is part of WAVE, a nucleation-promoting factor complex, that links Rac 1 activation to actin polymerization causing lamellipodia protrusion at the plasma membrane. Abi1 interact with formins to promote protrusions at the leading edge of motile cells. It also is a target of alpha4 integrin, regulating membrane protrusions at sites of integrin engagement. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212749 cd11815, SH3_Eve1_2, Second Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 55.3 bits (133), Expect = 4e-10
 Identities = 21/50 (42%), Positives = 32/50 (64%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           AV L+D+ A   D++S +  +I+  +E ID  W+RG C    G+FPAN+V
Sbjct: 2   AVVLHDFPAEHSDDLSLNSGEIVYLLEKIDTEWYRGKCKNTTGIFPANHV 51

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212868 cd11935, SH3_Nebulette_C, C-terminal Src Homology 3 domain of Nebulette and LIM-nebulette (or Lasp2)

 Score = 55.0 bits (132), Expect = 5e-10
 Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 2/52 (3%)

Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYVSL 523
           A+YDY A  +DE+SF   D I N++ IDEGW  G     G+ G+ PANY+  
Sbjct: 5   AMYDYSAQDEDEVSFRDGDYIVNVQPIDEGWMYGTVQRTGRTGMLPANYIEF 56

Nebulette is a cardiac-specific protein that localizes to the Z-disc. It interacts with tropomyosin and is important in stabilizing actin thin filaments in cardiac muscles. Polymorphisms in the nebulette gene are associated with dilated cardiomyopathy, with some mutations resulting in severe heart failure. Nebulette is a 107kD protein that contains an N-terminal acidic region, multiple nebulin repeats, and a C-terminal SH3 domain. LIM-nebulette, also called Lasp2 (LIM and SH3 domain protein 2), is an alternatively spliced variant of nebulette. Although it shares a gene with nebulette, Lasp2 is not transcribed from a muscle-specific promoter, giving rise to its multiple tissue expression pattern with highest amounts in the brain. It can crosslink actin filaments and it affects cell spreading. Lasp2 is a 34kD protein containing an N-terminal LIM domain, three nebulin repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212928 cd11995, SH3_Intersectin1_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-1

 Score = 55.0 bits (132), Expect = 5e-10
 Identities = 24/51 (47%), Positives = 32/51 (62%)

Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           + +YDY A  DDE++F    II  +   D  WW+G  +GQ GLFP+NYV L
Sbjct: 4   IGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGELNGQVGLFPSNYVKL 54

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212777 cd11843, SH3_PACSIN, Src homology 3 domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins

 Score = 54.7 bits (132), Expect = 6e-10
 Identities = 26/49 (53%), Positives = 33/49 (67%), Gaps = 1/49 (2%)

Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDE-GWWRGYCHGQYGLFPANYV 521
           ALYDY+    DE+SF   DI+T +E  DE GW +G   G+ GL+PANYV
Sbjct: 4   ALYDYEGQESDELSFKAGDILTKLEEEDEQGWCKGRLDGRVGLYPANYV 52

PACSINs, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212746 cd11812, SH3_AHI-1, Src Homology 3 domain of Abelson helper integration site-1 (AHI-1)

 Score = 54.4 bits (131), Expect = 6e-10
 Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRG-YCHGQYGLFPANYV 521
           T VALYDY A+  DE++    DII  +   ++ WW G   +GQ G FPANYV
Sbjct: 1   TVVALYDYTANRSDELTIHRGDIIRVLYKDNDNWWFGSLVNGQQGYFPANYV 52

AHI-1, also called Jouberin, is expressed in high levels in the brain, gonad tissues, and skeletal muscle. It is an adaptor protein that interacts with the small GTPase Rab8a and regulates it distribution and function, affecting cilium formation and vesicle transport. Mutations in the AHI-1 gene can cause Joubert syndrome, a disorder characterized by brainstem malformations, cerebellar aplasia/hypoplasia, and retinal dystrophy. AHI-1 variation is also associated with susceptibility to schizophrenia and type 2 diabetes mellitus progression. AHI-1 contains WD40 and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212720 cd11786, SH3_SH3RF_1, First Src Homology 3 domain of SH3 domain containing ring finger proteins

 Score = 54.3 bits (131), Expect = 7e-10
 Identities = 23/50 (46%), Positives = 32/50 (64%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           A ALY+Y+     ++SF   DII   + IDE W+ G C+G+ G FPA+YV
Sbjct: 2   AKALYNYEGKEPGDLSFKKGDIILLRKRIDENWYHGECNGKQGFFPASYV 51

This model represents the first SH3 domain of SH3RF1 (or POSH), SH3RF2 (or POSHER), SH3RF3 (POSH2), and similar domains. Members of this family are scaffold proteins that function as E3 ubiquitin-protein ligases. They all contain an N-terminal RING finger domain and multiple SH3 domains; SH3RF1 and SH3RF3 have four SH3 domains while SH3RF2 has three. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3RF2 acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212752 cd11818, SH3_Eve1_5, Fifth Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 54.4 bits (131), Expect = 7e-10
 Identities = 24/49 (48%), Positives = 31/49 (63%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANY 520
           A ALYD+    +DE+SF   DIIT +E IDE W  G   G+ G+FP N+
Sbjct: 2   ARALYDFTGENEDELSFKAGDIITELESIDEEWMSGELRGKSGIFPKNF 50

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212712 cd11778, SH3_Bzz1_2, Second Src Homology 3 domain of Bzz1 and similar domains

 Score = 54.4 bits (131), Expect = 7e-10
 Identities = 24/48 (50%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 474 ALYDYQASADDEISFDPDDIITNIEMID-EGWWRGYCHGQYGLFPANY 520
           ALYDY+A  DDEIS    D I  I   D  GW  G  +G  GLFP +Y
Sbjct: 4   ALYDYEAQGDDEISIRVGDRIAVIRGDDGSGWTYGEINGVKGLFPTSY 51

Bzz1 (or Bzz1p) is a WASP/Las17-interacting protein involved in endocytosis and trafficking to the vacuole. It physically interacts with type I myosins and functions in the early steps of endocytosis. Together with other proteins, it induces membrane scission in yeast. Bzz1 contains an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), a central coiled-coil, and two C-terminal SH3 domains. This model represents the second C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212762 cd11828, SH3_ARHGEF9_like, Src homology 3 domain of ARHGEF9-like Rho guanine nucleotide exchange factors

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 19/53 (35%), Positives = 30/53 (56%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
            A AL+D+     +E+ F   D+I  ++M D+ WW G    + G FPA++V L
Sbjct: 1   LAEALWDHVTMDPEELGFKAGDVIEVLDMSDKDWWWGSIRDEEGWFPASFVRL 53

Members of this family contain a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. They include the Rho guanine nucleotide exchange factors ARHGEF9, ASEF (also called ARHGEF4), ASEF2, and similar proteins. GEFs activate small GTPases by exchanging bound GDP for free GTP. ARHGEF9 specifically activates Cdc42, while both ASEF and ASEF2 can activate Rac1 and Cdc42. ARHGEF9 is highly expressed in the brain and it interacts with gephyrin, a postsynaptic protein associated with GABA and glycine receptors. ASEF plays a role in angiogenesis and cell migration. ASEF2 is important in cell migration and adhesion dynamics. ASEF exists in an autoinhibited form and is activated upon binding of the tumor suppressor APC (adenomatous polyposis coli), leading to the activation of Rac1 or Cdc42. In its autoinhibited form, the SH3 domain of ASEF forms an extensive interface with the DH and PH domains, blocking the Rac binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|213018 cd12142, SH3_D21-like, Src Homology 3 domain of SH3 domain-containing protein 21 (SH3D21) and similar proteins

 Score = 53.2 bits (128), Expect = 2e-09
 Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 475 LYDYQASADDEISFDPDDIITNI--EMIDEGWWRGYCHGQYGLFPANYV 521
           L+DY   A DE++    D+I  I  E  DEGWW G  +G+ G FP N+V
Sbjct: 5   LFDYNPVAPDELALKKGDVIEVISKETEDEGWWEGELNGRRGFFPDNFV 53

N-terminal SH3 domain of the uncharacterized protein SH3 domain-containing protein 21, and similar uncharacterized domains, it belongs to the CD2AP-like_3 subfamily of proteins. The CD2AP-like_3 subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212903 cd11970, SH3_PLCgamma1, Src homology 3 domain of Phospholipase C (PLC) gamma 1

 Score = 53.5 bits (128), Expect = 2e-09
 Identities = 24/49 (48%), Positives = 34/49 (69%), Gaps = 1/49 (2%)

Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGL-FPANYV 521
           AL+DY+A  +DE++F  + II N+E  + GWWRG   G+  L FP+NYV
Sbjct: 8   ALFDYKAQREDELTFTKNAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYV 56

PLCgamma1 is widely expressed and is essential in growth and development. It is activated by the TrkA receptor tyrosine kinase and functions as a key regulator of cell differentiation. It is also the predominant PLCgamma in T cells and is required for T cell and NK cell function. PLCs catalyze the hydrolysis of phosphatidylinositol (4,5)-bisphosphate [PtdIns(4,5)P2] to produce Ins(1,4,5)P3 and diacylglycerol (DAG). Ins(1,4,5)P3 initiates the calcium signaling cascade while DAG functions as an activator of PKC. PLCgamma contains a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, two catalytic regions of PLC domains that flank two tandem SH2 domains, followed by a SH3 domain and C2 domain. The SH3 domain of PLCgamma1 directly interacts with dynamin-1 and can serve as a guanine nucleotide exchange factor (GEF). It also interacts with Cbl, inhibiting its phosphorylation and activity. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 60

>gnl|CDD|212758 cd11824, SH3_PSTPIP1, Src homology 3 domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 21/50 (42%), Positives = 28/50 (56%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
              LYDY A  DDE+S    D++  IE  ++GWW    +GQ GL P  Y+
Sbjct: 2   YSVLYDYTAQEDDELSISKGDVVAVIEKGEDGWWTVERNGQKGLVPGTYL 51

PSTPIP1, also called CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212715 cd11781, SH3_Sorbs_1, First Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 21/51 (41%), Positives = 31/51 (60%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
            A ALY ++A +  E+S    DII     ID+ W+ G  +G+ G+FPA+YV
Sbjct: 1   KARALYPFKAQSAKELSLKKGDIIYIRRQIDKNWYEGEHNGRVGIFPASYV 51

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the first SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212897 cd11964, SH3_STAM1, Src homology 3 domain of Signal Transducing Adaptor Molecule 1

 Score = 53.0 bits (127), Expect = 2e-09
 Identities = 21/49 (42%), Positives = 34/49 (69%)

Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS 522
           A+YD++A+ D+E++F   DIIT ++  D  WW+G      GLFP+N+V+
Sbjct: 5   AIYDFEAAEDNELTFKAGDIITILDDSDPNWWKGETPQGTGLFPSNFVT 53

STAM1 is part of the endosomal sorting complex required for transport (ESCRT-0) and is involved in sorting ubiquitinated cargo proteins from the endosome. It may also be involved in the regulation of IL2 and GM-CSF mediated signaling, and has been implicated in neural cell survival. STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212929 cd11996, SH3_Intersectin2_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-2

 Score = 52.7 bits (126), Expect = 3e-09
 Identities = 22/51 (43%), Positives = 33/51 (64%)

Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           +A+YDY A+ +DE+SF    +I  +   D  WW+G  +G  GLFP+NYV +
Sbjct: 4   IAMYDYTANNEDELSFSKGQLINVLNKDDPDWWQGEINGVTGLFPSNYVKM 54

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN2 is expected to bind protein partners, similar to ITSN1 which has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212750 cd11816, SH3_Eve1_3, Third Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 52.4 bits (126), Expect = 3e-09
 Identities = 20/50 (40%), Positives = 32/50 (64%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
            VA +D++   +DE+SF   D+IT  E + E W +G  +G+ G+FP N+V
Sbjct: 2   CVARFDFEGEQEDELSFSEGDVITLKEYVGEEWAKGELNGKIGIFPLNFV 51

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212808 cd11875, SH3_CD2AP-like_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein and similar proteins

 Score = 52.4 bits (126), Expect = 4e-09
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNI--EMIDEGWWRGYCHGQYGLFPANYVSL 523
            A  L+DY+A  +DE++    DI+T +  +  D+GWW+G  +G+ G+FP N+V  
Sbjct: 1   KARVLFDYEAENEDELTLREGDIVTILSKDCEDKGWWKGELNGKRGVFPDNFVEP 55

This subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212714 cd11780, SH3_Sorbs_3, Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 52.3 bits (126), Expect = 4e-09
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYV 521
           ALY Y    +DE+     DI+  +E  D+GW+ G     G +G FP NYV
Sbjct: 4   ALYSYTPQNEDELELREGDIVYVMEKCDDGWFVGTSERTGLFGTFPGNYV 53

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the third SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212985 cd12052, SH3_CIN85_1, First Src Homology 3 domain (SH3A) of Cbl-interacting protein of 85 kDa

 Score = 52.2 bits (125), Expect = 4e-09
 Identities = 23/50 (46%), Positives = 32/50 (64%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           A+  +DY+A  +DE++    DIIT I+  D GWW G   G+ GLFP N+V
Sbjct: 2   AIVEFDYKAQHEDELTITVGDIITKIKKDDGGWWEGEIKGRRGLFPDNFV 51

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the first SH3 domain (SH3A) of CIN85; SH3A binds to internal proline-rich motifs within the proline-rich region. This intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. SH3A has also been shown to bind ubiquitin and to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic end of the cell adhesion protein CD2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212867 cd11934, SH3_Lasp1_C, C-terminal Src Homology 3 domain of LIM and SH3 domain protein 1

 Score = 51.9 bits (124), Expect = 6e-09
 Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 2/50 (4%)

Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYV 521
           A+YDY A+ +DE+SF   D I N++ ID+GW  G     G  G+ PANYV
Sbjct: 7   AVYDYNAADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYV 56

Lasp1 is a cytoplasmic protein that binds focal adhesion proteins and is involved in cell signaling, migration, and proliferation. It is overexpressed in several cancer cells including breast, ovarian, bladder, and liver. In cancer cells, it can be found in the nucleus; its degree of nuclear localization correlates with tumor size and poor prognosis. Lasp1 is a 36kD protein containing an N-terminal LIM domain, two nebulin repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 57.9 bits (141), Expect = 7e-09
 Identities = 35/104 (33%), Positives = 61/104 (58%), Gaps = 9/104 (8%)

Query: 361 IQNSNKEEEE--KEKQRMVQEEIKR------KEL-ERKEELEKEQIRIKEEQENIKKKKE 411
           ++ + KE E   KE     +EEI +      KEL ER+ EL+K + R+ +++EN+ +K E
Sbjct: 44  LEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLE 103

Query: 412 QEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQERLMEEL 455
             EK  +E E+ +K L +KQQE ++ + E +  + EQ + +E +
Sbjct: 104 LLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERI 147

Length = 520

>gnl|CDD|212933 cd12000, SH3_CASS4, Src homology 3 domain of CAS (Crk-Associated Substrate) scaffolding protein family member 4

 Score = 51.4 bits (123), Expect = 8e-09
 Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMI---DEGWWRGYCHGQYGLFPANYVSL 523
           A ALYD +A   DE++F   DI+T +E      EGWW+   HG+ GL PAN + L
Sbjct: 3   ARALYDNKADCSDELAFRRGDILTVLEQNVPGSEGWWKCLLHGRQGLAPANRLQL 57

CASS4, also called HEPL (HEF1-EFS-p130Cas-like), localizes to focal adhesions and plays a role in regulating FAK activity, focal adhesion integrity, and cell spreading. It is most abundant in blood cells and lung tissue, and is also found in high levels in leukemia and ovarian cell lines. CAS proteins function as molecular scaffolds to regulate protein complexes that are involved in many cellular processes. They share a common domain structure that includes an N-terminal SH3 domain, an unstructured substrate domain that contains many YxxP motifs, a serine-rich four-helix bundle, and a FAT-like C-terminal domain. The SH3 domain of CAS proteins binds to diverse partners including FAK, FRNK, Pyk2, PTP-PEST, DOCK180, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212896 cd11963, SH3_STAM2, Src homology 3 domain of Signal Transducing Adaptor Molecule 2

 Score = 51.2 bits (122), Expect = 1e-08
 Identities = 21/49 (42%), Positives = 33/49 (67%)

Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS 522
           ALYD++A  D+E++F   +II  ++  D  WW+G  H   GLFP+N+V+
Sbjct: 6   ALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGVGLFPSNFVT 54

STAM2, also called EAST (Epidermal growth factor receptor-associated protein with SH3 and TAM domain) or Hbp (Hrs binding protein), is part of the endosomal sorting complex required for transport (ESCRT-0). It plays a role in sorting mono-ubiquinated endosomal cargo for trafficking to the lysosome for degradation. It is also involved in the regulation of exocytosis. STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212992 cd12059, SH3_MLK1-3, Src Homology 3 domain of Mixed Lineage Kinases 1, 2, and 3

 Score = 50.9 bits (122), Expect = 1e-08
 Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 5/54 (9%)

Query: 474 ALYDYQASADDEISFDPDDIITNIEMI-----DEGWWRGYCHGQYGLFPANYVS 522
           A++DY+ASA+DE++    D +  +        DEGWW G  + + G+FP+NYV+
Sbjct: 4   AVFDYEASAEDELTLRRGDRVEVLSKDSAVSGDEGWWTGKINDRVGIFPSNYVT 57

MLKs 1, 2, and 3 are Serine/Threonine Kinases (STKs), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. Little is known about the specific function of MLK1, also called MAP3K9. It is capable of activating the c-Jun N-terminal kinase pathway. Mice lacking both MLK1 and MLK2 are viable, fertile, and have normal life spans. MLK2, also called MAP3K10, is abundant in brain, skeletal muscle, and testis. It functions upstream of the MAPK, c-Jun N-terminal kinase. It binds hippocalcin, a calcium-sensor protein that protects neurons against calcium-induced cell death. Both MLK2 and hippocalcin may be associated with the pathogenesis of Parkinson's disease. MLK3, also called MAP3K11, is highly expressed in breast cancer cells and its signaling through c-Jun N-terminal kinase has been implicated in the migration, invasion, and malignancy of cancer cells. It also functions as a negative regulator of Inhibitor of Nuclear Factor-KappaB Kinase (IKK) and thus, impacts inflammation and immunity. MLKs contain an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212775 cd11841, SH3_SH3YL1_like, Src homology 3 domain of SH3 domain containing Ysc84-like 1 (SH3YL1) protein

 Score = 50.9 bits (122), Expect = 1e-08
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDE--GWWRGYCHGQYGLFPANYVS 522
              ALY ++     ++SF   D IT +   D    WW G   G+ G+FPANYVS
Sbjct: 1   EVTALYSFEGQQPCDLSFQAGDRITVLTRTDSQFDWWEGRLRGRVGIFPANYVS 54

SH3YL1 localizes to the plasma membrane and is required for dorsal ruffle formation. It binds phosphoinositides (PIs) with high affinity through its N-terminal SYLF domain (also called DUF500). In addition, SH3YL1 contains a C-terminal SH3 domain which has been reported to bind to N-WASP, dynamin 2, and SHIP2 (a PI 5-phosphatase). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|219499 pfam07653, SH3_2, Variant SH3 domain

 Score = 50.5 bits (122), Expect = 1e-08
 Identities = 17/51 (33%), Positives = 29/51 (56%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS 522
              ++DY A+  +E+S    D++  ++  D GWW G   G+ GL P++YV 
Sbjct: 2   GRVIFDYVATDPNELSLKKGDVVKVLDKDDNGWWEGERGGRRGLVPSSYVE 52

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 53

>gnl|CDD|212730 cd11796, SH3_DNMBP_N3, Third N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 18/50 (36%), Positives = 30/50 (60%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           A  L D  A  D+E+     D++T   ++D+GW+RG  +G+ G+FP  +V
Sbjct: 2   ARVLQDLSAQLDEELDLREGDVVTITGILDKGWFRGELNGRRGIFPEGFV 51

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP binds the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212751 cd11817, SH3_Eve1_4, Fourth Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 50.2 bits (120), Expect = 2e-08
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANY 520
           AVALYD+    ++++SF   D I   E +D  W RG  +G+ G+FP  +
Sbjct: 2   AVALYDFTGETEEDLSFQRGDRILVTEHLDAEWSRGRLNGREGIFPRAF 50

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212905 cd11972, SH3_Abi2, Src homology 3 domain of Abl Interactor 2

 Score = 50.0 bits (119), Expect = 3e-08
 Identities = 24/49 (48%), Positives = 31/49 (63%)

Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           VA+YDY    +DE+SF    II  I+  D+GW+ G  +G  GLFP NYV
Sbjct: 6   VAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYV 54

Abi2 is highly expressed in the brain and eye. It regulates actin cytoskeletal reorganization at adherens junctions and dendritic spines, which is important in cell morphogenesis, migration, and cognitive function. Mice deficient with Abi2 show defects in orientation and migration of lens fibers, neuronal migration, dendritic spine morphology, as well as deficits in learning and memory. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212767 cd11833, SH3_Stac_1, First C-terminal Src homology 3 domain of SH3 and cysteine-rich domain-containing (Stac) proteins

 Score = 49.8 bits (119), Expect = 3e-08
 Identities = 19/51 (37%), Positives = 31/51 (60%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           T VALY ++   ++++   P D IT ++  +E WW+G    + G FPAN+V
Sbjct: 1   TYVALYKFKPQENEDLEMRPGDKITLLDDSNEDWWKGKIEDRVGFFPANFV 51

Stac proteins are putative adaptor proteins that contain a cysteine-rich C1 domain and one or two SH3 domains at the C-terminus. There are three mammalian members (Stac1, Stac2, and Stac3) of this family. Stac1 and Stac3 contain two SH3 domains while Stac2 contains a single SH3 domain at the C-terminus. This model represents the first C-terminal SH3 domain of Stac1 and Stac3, and the single C-terminal SH3 domain of Stac2. Stac1 and Stac2 have been found to be expressed differently in mature dorsal root ganglia (DRG) neurons. Stac1 is mainly expressed in peptidergic neurons while Stac2 is found in a subset of nonpeptidergic and all trkB+ neurons. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212807 cd11874, SH3_CD2AP-like_2, Second Src Homology 3 domain (SH3B) of CD2-associated protein and similar proteins

 Score = 49.3 bits (118), Expect = 5e-08
 Identities = 17/48 (35%), Positives = 28/48 (58%)

Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
            L+ Y    +DE+     D I  +  ++EGWW G  +G+ G+FP+N+V
Sbjct: 4   VLFSYTPQNEDELELKVGDTIEVLGEVEEGWWEGKLNGKVGVFPSNFV 51

This subfamily is composed of the second SH3 domain (SH3B) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3B of both proteins have been shown to bind to Cbl. In the case of CD2AP, its SH3B binds to Cbl at a site distinct from the c-Cbl/SH3A binding site. The CIN85 SH3B also binds ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212776 cd11842, SH3_Ysc84p_like, Src homology 3 domain of Ysc84p and similar fungal proteins

 Score = 49.0 bits (117), Expect = 5e-08
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMID--EGWWRGYCHGQYGLFPANYVSL 523
            AVALYD+      +++F   DIIT ++  D    WW G   G+ G+FPANYV L
Sbjct: 1   KAVALYDFAGEQPGDLAFQKGDIITILKKSDSQNDWWTGRIGGREGIFPANYVEL 55

This family is composed of the Saccharomyces cerevisiae proteins, Ysc84p (also called LAS17-binding protein 4, Lsb4p) and Lsb3p, and similar fungal proteins. They contain an N-terminal SYLF domain (also called DUF500) and a C-terminal SH3 domain. Ysc84p localizes to actin patches and plays an important in actin polymerization during endocytosis. The N-terminal domain of both Ysc84p and Lsb3p can bind and bundle actin filaments. A study of the yeast SH3 domain interactome predicts that the SH3 domains of Lsb3p and Lsb4p may function as molecular hubs for the assembly of endocytic complexes. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212884 cd11951, SH3_GRAP_C, C-terminal Src homology 3 domain of GRB2-related adaptor protein

 Score = 48.6 bits (116), Expect = 8e-08
 Identities = 21/48 (43%), Positives = 27/48 (56%)

Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           A YD+ A    ++SF   DII  ++  D  WWRG   G+ G FP NYV
Sbjct: 4   AQYDFSAEDPSQLSFRRGDIIEVLDCPDPNWWRGRISGRVGFFPRNYV 51

GRAP is a GRB-2 like adaptor protein that is highly expressed in lymphoid tissues. It acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. It has been identified as a regulator of TGFbeta signaling in diabetic kidney tubules and may have a role in the pathogenesis of the disease. GRAP contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domains (SH3c) of the related proteins, GRB2 and GRAP2, have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212990 cd12057, SH3_CIN85_3, Third Src Homology 3 domain (SH3C) of Cbl-interacting protein of 85 kDa

 Score = 48.4 bits (115), Expect = 9e-08
 Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 2/51 (3%)

Query: 475 LYDYQASADDEISFDPDDIITNI--EMIDEGWWRGYCHGQYGLFPANYVSL 523
           L+ Y+A  +DE++    DI+T I  + ID GWW G  +G+ G+FP N+V L
Sbjct: 5   LFPYEAQNEDELTIKEGDIVTLISKDCIDAGWWEGELNGRRGVFPDNFVKL 55

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the third SH3 domain (SH3C) of CIN85. SH3C has been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212902 cd11969, SH3_PLCgamma2, Src homology 3 domain of Phospholipase C (PLC) gamma 2

 Score = 48.3 bits (115), Expect = 1e-07
 Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 9/56 (16%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYG-----LFPANYV 521
           T  ALYDY+A   DE+SF    +I N+     GWW+    G YG      FP+NYV
Sbjct: 1   TVKALYDYRAKRSDELSFCKGALIHNVSKETGGWWK----GDYGGKVQHYFPSNYV 52

PLCgamma2 is primarily expressed in haematopoietic cells, specifically in B cells. It is activated by tyrosine phosphorylation by B cell receptor (BCR) kinases and is recruited to the plasma membrane where its substrate is located. It is required in pre-BCR signaling and in the maturation of B cells. PLCs catalyze the hydrolysis of phosphatidylinositol (4,5)-bisphosphate [PtdIns(4,5)P2] to produce Ins(1,4,5)P3 and diacylglycerol (DAG). Ins(1,4,5)P3 initiates the calcium signaling cascade while DAG functions as an activator of PKC. PLCgamma contains a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, two catalytic regions of PLC domains that flank two tandem SH2 domains, followed by a SH3 domain and C2 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212696 cd11762, SH3_FCHSD_2, Second Src Homology 3 domain of FCH and double SH3 domains proteins

 Score = 48.2 bits (115), Expect = 1e-07
 Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 4/49 (8%)

Query: 474 ALYDYQASADDEISFDPDDIITNIEM----IDEGWWRGYCHGQYGLFPA 518
           ALYDY+A +D+E+SF    II  +      +D+GWW G  +G+ G+FP+
Sbjct: 4   ALYDYEAQSDEELSFPEGAIIRILRKDDNGVDDGWWEGEFNGRVGVFPS 52

This group is composed of FCH and double SH3 domains protein 1 (FCHSD1) and FCHSD2. These proteins have a common domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. They have only been characterized in silico and their functions remain unknown. This group also includes the insect protein, nervous wreck, which acts as a regulator of synaptic growth signaling. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212984 cd12051, SH3_DOCK1_5_A, Src Homology 3 domain of Class A Dedicator of Cytokinesis proteins 1 and 5

 Score = 47.9 bits (114), Expect = 1e-07
 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC---HGQYGLFPANYVSLQ 524
            VA+Y+Y A   DE+S    D +  +E   EGW+RGY      + G+FPA+Y+ L+
Sbjct: 2   GVAIYNYDARGPDELSLQIGDTVHILETY-EGWYRGYTLRKKSKKGIFPASYIHLK 56

Dock1, also called Dock180, and Dock5 are class A DOCKs and are atypical guanine nucleotide exchange factors (GEFs) that lack the conventional Dbl homology (DH) domain. Dock1 interacts with the scaffold protein Elmo and the resulting complex functions upstream of Rac in many biological events including phagocytosis of apoptotic cells, cell migration and invasion. Dock5 functions upstream of Rac1 to regulate osteoclast function. All DOCKs contain two homology domains: the DHR-1 (Dock homology region-1), also called CZH1 (CED-5, Dock180, and MBC-zizimin homology 1), and DHR-2 (also called CZH2 or Docker). The DHR-1 domain binds phosphatidylinositol-3,4,5-triphosphate while DHR-2 contains the catalytic activity for Rac and/or Cdc42. Class A DOCKs also contain an SH3 domain at the N-terminal region and a PxxP motif at the C-terminus; they are specific GEFs for Rac. The SH3 domain of Dock1 binds to DHR-2 in an autoinhibitory manner; binding of Elmo to the SH3 domain of Dock1 exposes the DHR-2 domain and promotes GEF activity. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 54.4 bits (130), Expect = 1e-07
 Identities = 42/194 (21%), Positives = 89/194 (45%), Gaps = 5/194 (2%)

Query: 272  KFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKKLNGH 331
            K +   K  E +    +++ +EK+K  +    E+ +K EE++ +E   K EE   K    
Sbjct: 1523 KADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEE--DKNMAL 1580

Query: 332  SDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEE 391
                 +   E   +     L +        +    EE + + + + + E ++K++E+ ++
Sbjct: 1581 RKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKK 1640

Query: 392  LEKEQIRIKEE---QENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQ 448
             E E+ +  EE    E   K K  EE ++ E+++ +    KK +E+++  AE   +  E+
Sbjct: 1641 KEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEE 1700

Query: 449  ERLMEELRQQGTNE 462
             +  EEL+++   E
Sbjct: 1701 AKKAEELKKKEAEE 1714

Length = 2084

>gnl|CDD|212991 cd12058, SH3_MLK4, Src Homology 3 domain of Mixed Lineage Kinase 4

 Score = 48.0 bits (114), Expect = 1e-07
 Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 5/54 (9%)

Query: 474 ALYDYQASADDEISFDPDDIITNIEMI-----DEGWWRGYCHGQYGLFPANYVS 522
           ALYDY+AS +DE+S    D++  +        D+GWW G    + G+FPANYV+
Sbjct: 4   ALYDYEASGEDELSLRRGDVVEVLSQDAAVSGDDGWWAGKIRHRLGIFPANYVT 57

MLK4 is a Serine/Threonine Kinase (STK), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. The specific function of MLK4 is yet to be determined. Mutations in the kinase domain of MLK4 have been detected in colorectal cancers. MLK4 contains an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212835 cd11902, SH3_Nck2_2, Second Src Homology 3 domain of Nck2 adaptor protein

 Score = 47.7 bits (113), Expect = 2e-07
 Identities = 21/50 (42%), Positives = 29/50 (58%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           A   + Y A  +DE+S      +T +E   +GWWRG  +GQ G FP+NYV
Sbjct: 3   AFVKFAYVAEREDELSLVKGSRVTVMEKCSDGWWRGSYNGQIGWFPSNYV 52

Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds neuronal signaling proteins such as ephrinB and Disabled-1 (Dab-1) exclusively. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212743 cd11809, SH3_srGAP, Src homology 3 domain of Slit-Robo GTPase Activating Proteins

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 20/52 (38%), Positives = 30/52 (57%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           A A +DY   ++ E+SF   D +T    + + WWRG  +GQ GL P  Y++L
Sbjct: 2   ATAQFDYTGRSERELSFKKGDSLTLYRQVSDDWWRGQLNGQDGLVPHKYITL 53

Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs (srGAP1-3), all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. A fourth member has also been reported (srGAP4, also called ARHGAP4). srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212771 cd11837, SH3_Intersectin_2, Second Src homology 3 domain (or SH3B) of Intersectin

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH-GQYGLFPANYVSL 523
           TA ALY ++A  ++ +SF   DIIT +E   E WW G    G+ G FP +YV  
Sbjct: 1   TATALYPWRAKKENHLSFAKGDIITVLEQ-QEMWWFGELEGGEEGWFPKSYVKE 53

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The second SH3 domain (or SH3B) of ITSN1 has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 32/192 (16%), Positives = 74/192 (38%), Gaps = 7/192 (3%)

Query: 274 ENLAKQTEEESRKRSEEEKEKRKLKDQI-DLEQAQKLEERRLSELKIKEEEIEKKL-NGH 331
           + + K+     +K  E++ ++ KL+ Q+  LE      E +L E     +++ K++ + +
Sbjct: 41  KQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLN 100

Query: 332 SDVPLSPSTETPPVPVKSIL---KQPTSDGIPIQNSNKEEEEKEKQRMVQ--EEIKRKEL 386
           + +      E       +      Q +    P       E+ +   R+      +     
Sbjct: 101 ARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARA 160

Query: 387 ERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLL 446
           ER + L+    ++   +  I  ++ +      EQ   Q  L +  +E  +  A+  + L 
Sbjct: 161 ERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELS 220

Query: 447 EQERLMEELRQQ 458
             ++ +EELR  
Sbjct: 221 ADQKKLEELRAN 232

Length = 420

>gnl|CDD|212755 cd11821, SH3_ASAP, Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing proteins

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQ---YGLFPANY 520
           ALYD QA  DDE++F   +II      D+ WW G+  G     G+FP ++
Sbjct: 4   ALYDCQADNDDELTFSEGEIIVVTGEEDDEWWEGHIEGDPSRRGVFPVSF 53

ASAPs are Arf GTPase activating proteins (GAPs) and they function in regulating cell growth, migration, and invasion. They contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3, but some ASAP3 proteins do not seem to harbor a C-terminal SH3 domain. ASAP1 and ASAP2 show GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but are able to mediate Arf6 signaling by binding stably to GTP-Arf6. ASAP3 is an Arf6-specific GAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212979 cd12046, SH3_p67phox_C, C-terminal (or second) Src Homology 3 domain of the p67phox subunit of NADPH oxidase

 Score = 47.1 bits (112), Expect = 3e-07
 Identities = 18/49 (36%), Positives = 31/49 (63%)

Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           VAL+ Y+AS  +++ F   D+I  +  ++E W  G C G+ G+FP+ +V
Sbjct: 3   VALFSYEASQPEDLEFQKGDVILVLSKVNEDWLEGQCKGKIGIFPSAFV 51

p67phox, also called Neutrophil cytosol factor 2 (NCF-2), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox plays a regulatory role and contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. It binds, via its C-terminal SH3 domain, to a proline-rich region of p47phox and upon activation, this complex assembles with flavocytochrome b558, the Nox2-p22phox heterodimer. Concurrently, RacGTP translocates to the membrane and interacts with the TPR domain of p67phox, which leads to the activation of NADPH oxidase. The PB1 domain of p67phox binds to its partner PB1 domain in p40phox, and this facilitates the assembly of p47phox-p67phox at the membrane. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212772 cd11838, SH3_Intersectin_3, Third Src homology 3 domain (or SH3C) of Intersectin

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           +ALY Y+++   +++F+  D+I   +  D  WW G    + G+FP+NYV  
Sbjct: 3   IALYPYESNEPGDLTFNAGDVILVTKK-DGEWWTGTIGDRTGIFPSNYVRP 52

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The third SH3 domain (or SH3C) of ITSN1 has been shown to bind many proteins including dynamin1/2, CIN85, c-Cbl, SHIP2, Reps1, synaptojanin-1, and WNK, among others. The SH3C of ITSN2 has been shown to bind the K15 protein of Kaposi's sarcoma-associated herpesvirus. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212820 cd11887, SH3_Bbc1, Src Homology 3 domain of Bbc1 and similar domains

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 13/61 (21%)

Query: 470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQY---------GLFPANY 520
           +   ALY Y++  +D+++FD   +IT  E  D  W+     G+Y         G+FP N+
Sbjct: 2   FKVKALYPYESDHEDDLNFDVGQLITVTEEEDADWY----FGEYVDSNGNTKEGIFPKNF 57

Query: 521 V 521
           V
Sbjct: 58  V 58

This subfamily is composed of Saccharomyces cerevisiae Bbc1p, also called Mti1p (Myosin tail region-interacting protein), and similar proteins. Bbc1p interacts with and regulates type I myosins in yeast, Myo3p and Myo5p, which are involved in actin cytoskeletal reorganization. It also binds and inhibits Las17, a WASp family protein that functions as an activator of the Arp2/3 complex. Bbc1p contains an N-terminal SH3 domain. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 60

>gnl|CDD|212809 cd11876, SH3_MLK, Src Homology 3 domain of Mixed Lineage Kinases

 Score = 47.1 bits (112), Expect = 3e-07
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 5/55 (9%)

Query: 473 VALYDYQASADDEISFDPDDIITNIEMI-----DEGWWRGYCHGQYGLFPANYVS 522
            AL+DY A  +DE++      +  +        DEGWW G    + G+FP+NYV+
Sbjct: 3   TALFDYDARGEDELTLRRGQPVEVLSKDAAVSGDEGWWTGKIGDKVGIFPSNYVA 57

MLKs are Serine/Threonine Kinases (STKs), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. Mammals have four MLKs (MLK1-4), mostly conserved in vertebrates, which contain an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 52.8 bits (126), Expect = 4e-07
 Identities = 43/198 (21%), Positives = 92/198 (46%), Gaps = 1/198 (0%)

Query: 265  KPSNLRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEI 324
            K +  + K +   K  E +    +++ +E +K  +    E+ +K +E + +E   K EE 
Sbjct: 1504 KAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEK 1563

Query: 325  EKKLNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRK 384
            +K                     K   +    + + +    K+ + +E ++  + +IK +
Sbjct: 1564 KKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAE 1623

Query: 385  ELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQAR 444
            EL++ EE +K+  ++K+++   KKK E+ +K  +E+ + +     K+ EED+ KAEE  +
Sbjct: 1624 ELKKAEEEKKKVEQLKKKEAEEKKKAEELKKA-EEENKIKAAEEAKKAEEDKKKAEEAKK 1682

Query: 445  LLEQERLMEELRQQGTNE 462
              E E+   E  ++   E
Sbjct: 1683 AEEDEKKAAEALKKEAEE 1700

Length = 2084

>gnl|CDD|212697 cd11763, SH3_SNX9_like, Src Homology 3 domain of Sorting Nexin 9 and similar proteins

 Score = 46.6 bits (111), Expect = 4e-07
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 474 ALYDYQASADDEISFDPDDIITNI-EMIDEGWWRGY-CHGQYGLFPANYV 521
           ALYD+ +    E+S    +++T   + + +GW  G    G+ GLFP++YV
Sbjct: 4   ALYDFDSQPSGELSLRAGEVLTITRQDVGDGWLEGRNSRGEVGLFPSSYV 53

Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. This subfamily consists of SH3 domain containing SNXs including SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212987 cd12054, SH3_CD2AP_2, Second Src Homology 3 domain (SH3B) of CD2-associated protein

 Score = 46.1 bits (109), Expect = 6e-07
 Identities = 20/47 (42%), Positives = 30/47 (63%)

Query: 475 LYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           L++Y    +DE+     DII   E ++EGWW G  +G+ GLFP+N+V
Sbjct: 6   LFEYVPQNEDELELKVGDIIDINEEVEEGWWSGTLNGKSGLFPSNFV 52

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the second SH3 domain (SH3B) of CD2AP. SH3B binds to c-Cbl in a site (TPSSRPLR is the core binding motif) distinct from the c-Cbl/SH3A binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212747 cd11813, SH3_SGSM3, Src Homology 3 domain of Small G protein Signaling Modulator 3

 Score = 46.0 bits (109), Expect = 7e-07
 Identities = 24/52 (46%), Positives = 30/52 (57%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           A AL D++   DDE+ F  +DIIT I   DE  W G  +G  G FPA +V L
Sbjct: 2   AKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEL 53

SGSM3 is also called Merlin-associated protein (MAP), RUN and SH3 domain-containing protein (RUSC3), RUN and TBC1 domain-containing protein 3 (RUTBC3), Rab GTPase-activating protein 5 (RabGAP5), or Rab GAP-like protein (RabGAPLP). It is expressed ubiquitously and functions as a regulator of small G protein RAP- and RAB-mediated neuronal signaling. It is involved in modulating NGF-mediated neurite outgrowth and differentiation. It also interacts with the tumor suppressor merlin and may play a role in the merlin-associated suppression of cell growth. SGSM3 contains TBC, SH3, and RUN domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212778 cd11844, SH3_CAS, Src homology 3 domain of CAS (Crk-Associated Substrate) scaffolding proteins

 Score = 45.8 bits (109), Expect = 8e-07
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMID---EGWWRGYCHGQYGLFPANYVSL 523
           A ALYD  A + DE++F   DI+T +E      EGWW     G+ G+ P N + L
Sbjct: 2   ARALYDNVAESPDELAFRRGDILTVLEQNTAGLEGWWLCSLRGRQGIAPGNRLKL 56

CAS proteins function as molecular scaffolds to regulate protein complexes that are involved in many cellular processes including migration, chemotaxis, apoptosis, differentiation, and progenitor cell function. They mediate the signaling of integrins at focal adhesions where they localize, and thus, regulate cell invasion and survival. Over-expression of these proteins is implicated in poor prognosis, increased metastasis, and resistance to chemotherapeutics in many cancers such as breast, lung, melanoma, and glioblastoma. CAS proteins have also been linked to the pathogenesis of inflammatory disorders, Alzheimer's, Parkinson's, and developmental defects. They share a common domain structure that includes an N-terminal SH3 domain, an unstructured substrate domain that contains many YxxP motifs, a serine-rich four-helix bundle, and a FAT-like C-terminal domain. Vertebrates contain four CAS proteins: BCAR1 (or p130Cas), NEDD9 (or HEF1), EFS (or SIN), and CASS4 (or HEPL). The SH3 domain of CAS proteins binds to diverse partners including FAK, FRNK, Pyk2, PTP-PEST, DOCK180, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 51.7 bits (123), Expect = 9e-07
 Identities = 62/237 (26%), Positives = 114/237 (48%), Gaps = 17/237 (7%)

Query: 270  RAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKKLN 329
             A+ E + K  EEE + ++EE K+  + K + +  +  + E++++ +LK KE E +KK  
Sbjct: 1591 EARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAE 1650

Query: 330  GHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERK 389
                  L  + E   +      K+   D    + + K EE+++K     E +K++  E K
Sbjct: 1651 -----ELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKA---AEALKKEAEEAK 1702

Query: 390  EELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQE 449
            +    E+++ KE +E   KKK +E K+ +E+ + +    KK+ EED+ KAEE  +  E++
Sbjct: 1703 K---AEELKKKEAEE---KKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEK 1756

Query: 450  RLMEELRQQGTNEDTEEDLGYTAV---ALYDYQASADDEISFDPDDIITNIEMIDEG 503
            + +  L+++   +  E      AV    L +       E+     DI  N   I EG
Sbjct: 1757 KKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEG 1813

Length = 2084

>gnl|CDD|212738 cd11804, SH3_GRB2_like_N, N-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 45.4 bits (108), Expect = 9e-07
 Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 3/52 (5%)

Query: 472 AVALYDYQASADDEISFDPDDI--ITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           AVA +D++A+A+DE+SF    I  + N+E  D  W++    G+ GL P NY+
Sbjct: 2   AVAKHDFKATAEDELSFKKGSILKVLNMED-DPNWYKAELDGKEGLIPKNYI 52

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The N-terminal SH3 domain of GRB2 binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212803 cd11870, SH3_p67phox-like_C, C-terminal Src Homology 3 domain of the p67phox subunit of NADPH oxidase and similar proteins

 Score = 45.6 bits (108), Expect = 9e-07
 Identities = 16/49 (32%), Positives = 28/49 (57%)

Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           VAL+ Y+A   +++ F   D I  +  ++E W  G+  G+ G+FP  +V
Sbjct: 3   VALHRYEAQGPEDLGFREGDTIDVLSEVNEAWLEGHSDGRVGIFPKCFV 51

This subfamily is composed of p67phox, NADPH oxidase activator 1 (Noxa1), and similar proteins. p67phox, also called Neutrophil cytosol factor 2 (NCF-2), and Noxa1 are homologs and are the cytosolic subunits of the phagocytic (Nox2) and nonphagocytic (Nox1) NADPH oxidase complexes, respectively. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox and Noxa1 play regulatory roles. p67phox contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. Noxa1 has a similar domain architecture except it is lacking the N-terminal SH3 domain. The TPR domain of both binds activated GTP-bound Rac, while the C-terminal SH3 domain of p67phox and Noxa1 binds the polyproline motif found at the C-terminus of p47phox and Noxo1, respectively. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212919 cd11986, SH3_Stac3_1, First C-terminal Src homology 3 domain of SH3 and cysteine-rich domain-containing protein 3 (Stac3)

 Score = 45.7 bits (108), Expect = 9e-07
 Identities = 20/49 (40%), Positives = 30/49 (61%)

Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           VALY ++A   D++ F P + IT I+  +E WWRG    + G FP N++
Sbjct: 3   VALYRFKALEKDDLDFHPGERITVIDDSNEEWWRGKIGEKTGYFPMNFI 51

Stac proteins are putative adaptor proteins that contain a cysteine-rich C1 domain and one or two SH3 domains at the C-terminus. There are three mammalian members (Stac1, Stac2, and Stac3) of this family. Stac1 and Stac3 contain two SH3 domains while Stac2 contains a single SH3 domain at the C-terminus. Stac1 and Stac2 have been found to be expressed differently in mature dorsal root ganglia (DRG) neurons. Stac1 is mainly expressed in peptidergic neurons while Stac2 is found in a subset of nonpeptidergic and all trkB+ neurons. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212834 cd11901, SH3_Nck1_2, Second Src Homology 3 domain of Nck1 adaptor protein

 Score = 45.4 bits (107), Expect = 1e-06
 Identities = 20/51 (39%), Positives = 30/51 (58%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS 522
           A   ++Y A  +DE+S      +  +E   +GWWRG  +GQ G FP+NYV+
Sbjct: 4   AYVKFNYTAEREDELSLVKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVT 54

Nck1 (also called Nckalpha) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds and activates RasGAP, resulting in the downregulation of Ras. It is also involved in the signaling of endothilin-mediated inhibition of cell migration. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212764 cd11830, SH3_VAV_2, C-terminal (or second) Src homology 3 domain of VAV proteins

 Score = 45.3 bits (107), Expect = 1e-06
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNI-EMIDEGWWRGYCHGQYGLFPANYV 521
           TA A YD+ A    E+S    D++    +   +GWWRG  +G+ G FP+ YV
Sbjct: 1   TAKARYDFCARDMRELSLKEGDVVKIYNKKGQQGWWRGEINGRIGWFPSTYV 52

VAV proteins function both as cytoplasmic guanine nucleotide exchange factors (GEFs) for Rho GTPases and scaffold proteins and they play important roles in cell signaling by coupling cell surface receptors to various effector functions. They play key roles in processes that require cytoskeletal reorganization including immune synapse formation, phagocytosis, cell spreading, and platelet aggregation, among others. Vertebrates have three VAV proteins (VAV1, VAV2, and VAV3). VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212989 cd12056, SH3_CD2AP_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein

 Score = 45.2 bits (107), Expect = 1e-06
 Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 2/52 (3%)

Query: 474 ALYDYQASADDEISFDPDDII--TNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           AL+ Y+ + +DE+ F   +II   + +  + GWW+G  +G+ G+FP N+VS 
Sbjct: 6   ALFHYEGTNEDELDFKEGEIILIISKDTGEPGWWKGELNGKEGVFPDNFVSQ 57

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the third SH3 domain (SH3C) of CD2AP. SH3C has been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212994 cd12061, SH3_betaPIX, Src Homology 3 domain of beta-Pak Interactive eXchange factor

 Score = 45.1 bits (106), Expect = 1e-06
 Identities = 19/48 (39%), Positives = 31/48 (64%)

Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           A +++Q + +DE+SF   D+I    + + GWW G  +G+ G FP+NYV
Sbjct: 4   AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 51

Beta-PIX, also called Rho guanine nucleotide exchange factor 7 (ARHGEF7) or Cool (Cloned out of Library)-1, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and plays important roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212853 cd11920, SH3_Sorbs2_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 45.4 bits (107), Expect = 1e-06
 Identities = 20/50 (40%), Positives = 31/50 (62%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           A A+YD++A    E+SF   D +  +  ID+ W+ G  HG+ G+FP +YV
Sbjct: 3   ARAVYDFKAQTSKELSFKKGDTVYILRKIDQNWYEGEHHGRVGIFPISYV 52

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 50.7 bits (122), Expect = 1e-06
 Identities = 29/111 (26%), Positives = 58/111 (52%), Gaps = 9/111 (8%)

Query: 361 IQNSNKEEEEKEKQRMVQ--EEIK--RKELE-----RKEELEKEQIRIKEEQENIKKKKE 411
           I+ + KE E  +K+ +++  EE+   R ELE     R+ EL++ + R+ + +E + +K E
Sbjct: 38  IEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKME 97

Query: 412 QEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQERLMEELRQQGTNE 462
             +K+ +  E+ +K L  K++  D  + E +  + EQ   +E +      E
Sbjct: 98  SLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQEE 148

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

>gnl|CDD|212721 cd11787, SH3_SH3RF_2, Second Src Homology 3 domain of SH3 domain containing ring finger proteins

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 471 TAVALYDYQASADDE---ISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANY 520
              ALYD++   +DE   ++F   D+IT I  +DE W  G    + G+FP ++
Sbjct: 1   QCKALYDFEMKDEDEKDCLTFKKGDVITVIRRVDENWAEGRLGDKIGIFPISF 53

This model represents the second SH3 domain of SH3RF1 (or POSH), SH3RF2 (or POSHER), SH3RF3 (POSH2), and similar domains. Members of this family are scaffold proteins that function as E3 ubiquitin-protein ligases. They all contain an N-terminal RING finger domain and multiple SH3 domains; SH3RF1 and SH3RF3 have four SH3 domains while SH3RF2 has three. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3RF2 acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212724 cd11790, SH3_Amphiphysin, Src Homology 3 domain of Amphiphysin and related domains

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 7/58 (12%)

Query: 470 YTAVALYDYQASADDEISFDPDDIITNIEM-----IDEGWWRGY--CHGQYGLFPANY 520
           Y   A +DY A   DE++F+  D+I  I        DEGW  G     G  G+FP N+
Sbjct: 3   YKVRATHDYTAEDTDELTFEKGDVILVIPFDDPEEQDEGWLMGVKESTGCRGVFPENF 60

Amphiphysins function primarily in endocytosis and other membrane remodeling events. They exist in several isoforms and mammals possess two amphiphysin proteins from distinct genes. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin, and synaptojanin. They function in synaptic vesicle endocytosis. Human autoantibodies to amphiphysin I hinder GABAergic signaling and contribute to the pathogenesis of paraneoplastic stiff-person syndrome. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. Mutations in Bin1 are associated with autosomal recessive centronuclear myopathy. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. The SH3 domain of amphiphysins bind proline-rich motifs present in binding partners such as dynamin, synaptojanin, and nsP3. It also belongs to a subset of SH3 domains that bind ubiquitin in a site that overlaps with the peptide binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 64

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 49.4 bits (119), Expect = 3e-06
 Identities = 44/185 (23%), Positives = 82/185 (44%), Gaps = 55/185 (29%)

Query: 274 ENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKKLNGHSD 333
           E  AK+  EE++K +E  K++  L+ +   E+  KL      EL+ +  E++K       
Sbjct: 37  EEEAKRILEEAKKEAEAIKKEALLEAK---EEIHKLRNEFEKELRERRNELQKLEK---- 89

Query: 334 VPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELE 393
                                       +   KEE    K     E ++++E    EELE
Sbjct: 90  ----------------------------RLLQKEENLDRK----LELLEKRE----EELE 113

Query: 394 KEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQERLME 453
           K++  ++++Q+ ++KK+  EE E   +E+ Q+L     +    L AEE A+    E L+E
Sbjct: 114 KKEKELEQKQQELEKKE--EELEELIEEQLQEL-----ERISGLTAEE-AK----EILLE 161

Query: 454 ELRQQ 458
           ++ ++
Sbjct: 162 KVEEE 166

Length = 520

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 49.8 bits (118), Expect = 3e-06
 Identities = 44/207 (21%), Positives = 87/207 (42%), Gaps = 8/207 (3%)

Query: 265  KPSNLRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDL-EQAQKLEERRLSELKIKEEE 323
            K    + K +   K+ EE  +     + E     D+ +  E+  +  E++  E K K + 
Sbjct: 1323 KAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADA 1382

Query: 324  IEKKLNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKR 383
             +KK         +             LK+  +       + K+ EEK+K     E  K+
Sbjct: 1383 AKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKK---ADEAKKK 1439

Query: 384  KELERKEELEKEQIRIKEEQENIKKKKEQ----EEKERKEQEENQKLLLKKQQEEDRLKA 439
             E  +K +  K++    ++ E  KKK E+    +E ++K +E  +    KK+ EE + KA
Sbjct: 1440 AEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKA 1499

Query: 440  EEQARLLEQERLMEELRQQGTNEDTEE 466
            +E  +  E ++  +E ++    +  +E
Sbjct: 1500 DEAKKAAEAKKKADEAKKAEEAKKADE 1526

Length = 2084

>gnl|CDD|212860 cd11927, SH3_SH3RF1_1, First Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase

 Score = 44.2 bits (104), Expect = 3e-06
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           A ALY+Y+     ++ F   DII     +DE W+ G  +G +G FP N+V +
Sbjct: 3   AKALYNYEGKEPGDLKFSKGDIIILRRQVDENWYHGEVNGIHGFFPTNFVQI 54

SH3RF1 is also called POSH (Plenty of SH3s) or SH3MD2 (SH3 multiple domains protein 2). It is a scaffold protein that acts as an E3 ubiquitin-protein ligase. It plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF1 also enhances the ubiquitination of ROMK1 potassium channel resulting in its increased endocytosis. It contains an N-terminal RING finger domain and four SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212849 cd11916, SH3_Sorbs1_3, Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin

 Score = 44.6 bits (105), Expect = 3e-06
 Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYVSL 523
           Y+  ALY Y    DDE+     DI+  +E  D+GW+ G      Q+G FP NYV L
Sbjct: 2   YSYQALYSYAPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKL 57

Sorbs1 is also called ponsin, SH3P12, or CAP (c-Cbl associated protein). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It binds Cbl and plays a major role in regulating the insulin signaling pathway by enhancing insulin-induced phosphorylation of Cbl. Sorbs1, like vinexin, localizes at cell-ECM and cell-cell adhesion sites where it binds vinculin, paxillin, and afadin. It may function in the control of cell motility. Other interaction partners of Sorbs1 include c-Abl, Sos, flotillin, Grb4, ataxin-7, filamin C, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212988 cd12055, SH3_CIN85_2, Second Src Homology 3 domain (SH3B) of Cbl-interacting protein of 85 kDa

 Score = 44.2 bits (104), Expect = 3e-06
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
             + Y    +DE+     DII  +  ++EGWW G  +G+ G+FP+N++
Sbjct: 4   VAFSYLPQNEDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFI 51

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the second SH3 domain (SH3B) of CIN85. SH3B has been shown to bind Cbl proline-rich peptides and ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212861 cd11928, SH3_SH3RF3_1, First Src Homology 3 domain of SH3 domain containing ring finger 3, an E3 ubiquitin-protein ligase

 Score = 44.1 bits (104), Expect = 3e-06
 Identities = 17/50 (34%), Positives = 27/50 (54%)

Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           ALY Y+     ++ F+  DII     +DE W+ G  +G +G  PA+Y+  
Sbjct: 5   ALYSYEGKEPGDLKFNKGDIIILRRKVDENWYHGELNGCHGFLPASYIQC 54

SH3RF3 is also called POSH2 (Plenty of SH3s 2) or SH3MD4 (SH3 multiple domains protein 4). It is a scaffold protein with E3 ubiquitin-protein ligase activity. It was identified in the screen for interacting partners of p21-activated kinase 2 (PAK2). It may play a role in regulating JNK mediated apoptosis in certain conditions. It also interacts with GTP-loaded Rac1. SH3RF3 is highly homologous to SH3RF1; it also contains an N-terminal RING finger domain and four SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF3. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212889 cd11956, SH3_srGAP4, Src homology 3 domain of Slit-Robo GTPase Activating Protein 4

 Score = 44.1 bits (104), Expect = 3e-06
 Identities = 19/52 (36%), Positives = 26/52 (50%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           AVA +DY      E+SF   D++         WWRG  +G  GL P  Y+S+
Sbjct: 4   AVACFDYTGRTAQELSFKRGDVLLLHSKASSDWWRGEHNGMRGLIPHKYISV 55

srGAP4, also called ARHGAP4, is highly expressed in hematopoietic cells and may play a role in lymphocyte differentiation. It is able to stimulate the GTPase activity of Rac1, Cdc42, and RhoA. In the nervous system, srGAP4 has been detected in differentiating neurites and may be involved in axon and dendritic growth. srGAPs are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212769 cd11835, SH3_ARHGAP32_33, Src homology 3 domain of Rho GTPase-activating proteins 32 and 33, and similar proteins

 Score = 44.0 bits (104), Expect = 3e-06
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEM---IDEGWWRGYCHGQYGLFPANYV 521
           A  +  Y A A DE+S +  DI++ I+M    +  WWRG    Q G FP+  V
Sbjct: 2   AHVIKRYTAQAPDELSLEVGDIVSVIDMPPPEESTWWRGKKGFQVGFFPSECV 54

Members of this family contain N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal extensions. RhoGAPs (or ARHGAPs) bind to Rho proteins and enhance the hydrolysis rates of bound GTP. ARHGAP32 is also called RICS, PX-RICS, p250GAP, or p200RhoGAP. It is a Rho GTPase-activating protein for Cdc42 and Rac1, and is implicated in the regulation of postsynaptic signaling and neurite outgrowth. PX-RICS, a variant of RICS that contain PX and SH3 domains, is the main isoform expressed during neural development. It is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. ARHGAP33, also called sorting nexin 26 or TCGAP (Tc10/CDC42 GTPase-activating protein), is widely expressed in the brain where it is involved in regulating the outgrowth of axons and dendrites and is regulated by the protein tyrosine kinase Fyn. It is translocated to the plasma membrane in adipocytes in response to insulin and may be involved in the regulation of insulin-stimulated glucose transport. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212790 cd11856, SH3_p47phox_like, Src homology 3 domains of the p47phox subunit of NADPH oxidase and similar domains

 Score = 43.8 bits (104), Expect = 3e-06
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 4/50 (8%)

Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC--HGQYGLFPANY 520
           VA+ DY+A  DDEIS    +++  +E  D GWW  Y     + G  PA+Y
Sbjct: 3   VAIADYEAQGDDEISLQEGEVVEVLEKNDSGWW--YVRKGDKEGWVPASY 50

This family is composed of the tandem SH3 domains of p47phox subunit of NADPH oxidase and Nox Organizing protein 1 (NoxO1), the four SH3 domains of Tks4 (Tyr kinase substrate with four SH3 domains), the five SH3 domains of Tks5, the SH3 domain of obscurin, Myosin-I, and similar domains. Most members of this group also contain Phox homology (PX) domains, except for obscurin and Myosin-I. p47phox and NoxO1 are regulators of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) and nonphagocytic NADPH oxidase Nox1, respectively. They play roles in the activation of their respective NADPH oxidase, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Obscurin is a giant muscle protein that plays important roles in the organization and assembly of the myofibril and the sarcoplasmic reticulum. Type I myosins (Myosin-I) are actin-dependent motors in endocytic actin structures and actin patches. They play roles in membrane traffic in endocytic and secretory pathways, cell motility, and mechanosensing. Myosin-I contains an N-terminal actin-activated ATPase, a phospholipid-binding TH1 (tail homology 1) domain, and a C-terminal extension which includes an F-actin-binding TH2 domain, an SH3 domain, and an acidic peptide that participates in activating the Arp2/3complex. The SH3 domain of myosin-I is required for myosin-I-induced actin polymerization. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212779 cd11845, SH3_Src_like, Src homology 3 domain of Src kinase-like Protein Tyrosine Kinases

 Score = 43.7 bits (104), Expect = 4e-06
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 4/51 (7%)

Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH---GQYGLFPANY 520
           VALYDY+A  DD++SF   D +  ++  D  WW    H   G+ G  P+NY
Sbjct: 3   VALYDYEARTDDDLSFKKGDRLQILDDSDGDWWLA-RHLSTGKEGYIPSNY 52

Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, Yes, and Brk. Src (or c-Src) proteins are cytoplasmic (or non-receptor) PTKs which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). However, Brk lacks the N-terminal myristoylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells, and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, Lyn, and Brk show a limited expression pattern. This subfamily also includes Drosophila Src42A, Src oncogene at 42A (also known as Dsrc41) which accumulates at sites of cell-cell or cell-matrix adhesion, and participates in Drosphila development and wound healing. It has been shown to promote tube elongation in the tracheal system, is essential for proper cell-cell matching during dorsal closure, and regulates cell-cell contacts in developing Drosophila eyes. The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212881 cd11948, SH3_GRAP_N, N-terminal Src homology 3 domain of GRB2-related adaptor protein

 Score = 44.0 bits (104), Expect = 4e-06
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDE-GWWRGYCHGQYGLFPANYVSL 523
           AVALY +QA+  DE+ F   DI+  + M D+  W++    G+ G  P NY+ +
Sbjct: 2   AVALYSFQATESDELPFQKGDILKILNMEDDQNWYKAELQGREGYIPKNYIKV 54

GRAP is a GRB-2 like adaptor protein that is highly expressed in lymphoid tissues. It acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. It has been identified as a regulator of TGFbeta signaling in diabetic kidney tubules and may have a role in the pathogenesis of the disease. GRAP contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The N-terminal SH3 domain of the related protein GRB2 binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212923 cd11990, SH3_Intersectin2_2, Second Src homology 3 domain (or SH3B) of Intersectin-2

 Score = 43.9 bits (103), Expect = 4e-06
 Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           A AL  + A  D+ ++F  +DIIT +E   E WW G  HG  G FP +YV L
Sbjct: 2   AQALCSWTAKKDNHLNFSKNDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKL 52

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The second SH3 domain (or SH3B) of ITSN2 is expected to bind protein partners, similar to ITSN1 which has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212980 cd12047, SH3_Noxa1_C, C-terminal Src Homology 3 domain of NADPH oxidase activator 1

 Score = 43.7 bits (103), Expect = 4e-06
 Identities = 15/49 (30%), Positives = 27/49 (55%)

Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           VA +DY A   +++ F   D I  +  +++ W  G+C G+ G+FP  + 
Sbjct: 3   VAQHDYSAQGPEDLEFSQGDTIDILSEVNQEWLEGHCDGRIGIFPKCFA 51

Noxa1 is a homolog of p67phox and is a cytosolic subunit of the nonphagocytic NADPH oxidase complex Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Noxa1 is co-expressed with Nox1 in colon, stomach, uterus, prostate, and vascular smooth muscle cells, consistent with its regulatory role. It does not interact with p40phox, unlike p67phox, making Nox1 activity independent of p40phox, unlike Nox2. Noxa1 contains TPR, PB1, and C-terminal SH3 domains, but lacks the central SH3 domain that is present in p67phox. The TPR domain binds activated GTP-bound Rac. The C-terminal SH3 domain binds the polyproline motif found at the C-terminus of Noxo1, a homolog of p47phox. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212922 cd11989, SH3_Intersectin1_2, Second Src homology 3 domain (or SH3B) of Intersectin-1

 Score = 43.5 bits (102), Expect = 4e-06
 Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           A ALY ++A  D+ ++F+ +D+IT +E  D  WW G   GQ G FP +YV L
Sbjct: 2   AQALYPWRAKKDNHLNFNKNDVITVLEQQDM-WWFGEVQGQKGWFPKSYVKL 52

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The second SH3 domain (or SH3B) of ITSN1 has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 48.9 bits (117), Expect = 5e-06
 Identities = 44/197 (22%), Positives = 93/197 (47%), Gaps = 11/197 (5%)

Query: 276 LAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKKLNGHSDVP 335
           LAK  E        EE+  R  ++  +L++  +  E+ + ELK + EE+ ++L    +  
Sbjct: 231 LAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEEL 290

Query: 336 LSPSTETPPV-PVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEK 394
           L    E   +    S+L++   +   ++N  +E EE+ ++   + E  ++ELE +E L +
Sbjct: 291 LELKEEIEELEGEISLLRERLEE---LENELEELEERLEELKEKIEALKEELEERETLLE 347

Query: 395 EQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEE----DRLKAEEQARLLEQER 450
           E   +++    +++ KE+ E++     E  + L +  +EE    +   AE +  L E +R
Sbjct: 348 E---LEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKR 404

Query: 451 LMEELRQQGTNEDTEED 467
            +E L ++        +
Sbjct: 405 EIESLEERLERLSERLE 421

Length = 1163

>gnl|CDD|212885 cd11952, SH3_iASPP, Src Homology 3 (SH3) domain of Inhibitor of ASPP protein (iASPP)

 Score = 43.4 bits (102), Expect = 6e-06
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEG--WWRGYCHGQYGLFPANYVSL 523
           AL+DY A   DE+SF   D++T +    EG  WW     G+ G  P NY  L
Sbjct: 5   ALWDYSAEFPDELSFKEGDMVTVLRKDGEGTDWWWASLCGREGYVPRNYFGL 56

iASPP, also called RelA-associated inhibitor (RAI), is an oncoprotein that inhibits the apoptotic transactivation potential of p53. It is upregulated in human breast cancers expressing wild-type p53, in acute leukemias regardless of the p53 mutation status, as well as in ovarian cancer where it is associated with poor patient outcome and chemoresistance. iASPP is also a binding partner and negative regulator of p65RelA, which promotes cell proliferation and inhibits apoptosis; p65RelA has the opposite effect on cell growth compared to the p53 family. It contains a proline-rich region, four ankyrin (ANK) repeats, and an SH3 domain at its C-terminal half. The SH3 domain and the ANK repeats of iASPP contribute to the p53 binding site; they bind to the DNA binding domain of p53. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212936 cd12003, SH3_EFS, Src homology 3 domain of CAS (Crk-Associated Substrate) scaffolding protein family member, Embryonal Fyn-associated Substrate

 Score = 43.3 bits (102), Expect = 6e-06
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMID---EGWWRGYCHGQYGLFPANYVSLQQ 525
           A ALYD  A + +E+SF   D++  ++       GWW    HGQ G+ PAN + L  
Sbjct: 3   AKALYDNAAESPEELSFRRGDVLMVLKREHGSLPGWWLCSLHGQQGIAPANRLRLLP 59

EFS is also called HEFS, CASS3 (Cas scaffolding protein family member 3) or SIN (Src-interacting protein). It was identified based on interactions with the Src kinases, Fyn and Yes. It plays a role in thymocyte development and acts as a negative regulator of T cell proliferation. CAS proteins function as molecular scaffolds to regulate protein complexes that are involved in many cellular processes. They share a common domain structure that includes an N-terminal SH3 domain, an unstructured substrate domain that contains many YxxP motifs, a serine-rich four-helix bundle, and a FAT-like C-terminal domain. The SH3 domain of CAS proteins binds to diverse partners including FAK, FRNK, Pyk2, PTP-PEST, DOCK180, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 47.8 bits (113), Expect = 1e-05
 Identities = 51/206 (24%), Positives = 101/206 (49%), Gaps = 16/206 (7%)

Query: 277  AKQTEEESRKRSEE----EKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKKLNGHS 332
            AK+  EE++K+++E     + K+K  +    E+A+K +E + +E   K +E +K      
Sbjct: 1488 AKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKK 1547

Query: 333  DVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEEL 392
               L  + E      K   ++          + ++ EE +K    + E   K  E ++++
Sbjct: 1548 ADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKM 1607

Query: 393  EKEQIRIKEEQENIKK---KKEQEEKERKEQ-------EENQKLLLKKQQEEDRLKAEEQ 442
            + E+ + K E+  IK    KK +EEK++ EQ       E+ +   LKK +EE+++KA E+
Sbjct: 1608 KAEEAK-KAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEE 1666

Query: 443  ARLLEQE-RLMEELRQQGTNEDTEED 467
            A+  E++ +  EE ++   +E    +
Sbjct: 1667 AKKAEEDKKKAEEAKKAEEDEKKAAE 1692

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 47.8 bits (113), Expect = 1e-05
 Identities = 48/195 (24%), Positives = 95/195 (48%), Gaps = 14/195 (7%)

Query: 278  KQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSEL--------KIKEEEIEKKLN 329
            K+ EE+ +    ++ E+ K       E+A+K EE R+ E+        K+K EE +K   
Sbjct: 1558 KKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEE 1617

Query: 330  GHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEE-----KEKQRMVQEEIKRK 384
                       E     V+ + K+   +    +   K EEE      E+ +  +E+ K+ 
Sbjct: 1618 AKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKA 1677

Query: 385  ELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQAR 444
            E  +K E ++++     ++E  + KK +E K+++ +E+ +   LKK +EE+++KAEE  +
Sbjct: 1678 EEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKK 1737

Query: 445  LLEQE-RLMEELRQQ 458
              E++ +  EE ++ 
Sbjct: 1738 EAEEDKKKAEEAKKD 1752

Length = 2084

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 38/190 (20%), Positives = 81/190 (42%), Gaps = 16/190 (8%)

Query: 268 NLRAKFENLAKQTEEESRKRSEEEKEKRKLKDQI-DLEQAQKLEERRLSELKIKEEEIEK 326
            L  +   L  Q E+   +    + E R L+D + +L +  +  ER+L ELK +   +E+
Sbjct: 671 ELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEE 730

Query: 327 KLNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKEL 386
           +L                     + +         +   + +E  E+     E ++    
Sbjct: 731 ELEQLQ---------------SRLEELEEELEELEEELEELQERLEELEEELESLEEALA 775

Query: 387 ERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLL 446
           + KEE+E+ + + +  QE +++ +E+ E+  +  +  ++ L   +Q  +RL+ E +    
Sbjct: 776 KLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEE 835

Query: 447 EQERLMEELR 456
           E E L E+L 
Sbjct: 836 EIEELEEKLD 845

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 46/201 (22%), Positives = 83/201 (41%), Gaps = 25/201 (12%)

Query: 269 LRAKFENLAKQTE--EESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEK 326
           L  + E L +Q E  E  ++   E +E         L++ +K  E    EL   EEE+E+
Sbjct: 198 LEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEE 257

Query: 327 KLNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKEL 386
                               ++   K+       I+    E EE  ++    +E   +  
Sbjct: 258 LQEE----------------LEEAEKE-------IEELKSELEELREELEELQEELLELK 294

Query: 387 ERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLL 446
           E  EELE E   ++E  E ++ + E+ E+  +E +E  + L ++ +E + L  E +  L 
Sbjct: 295 EEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLA 354

Query: 447 EQERLMEELRQQGTNEDTEED 467
           E E   EEL ++ +    E +
Sbjct: 355 ELEEAKEELEEKLSALLEELE 375

Length = 1163

>gnl|CDD|212805 cd11872, SH3_DOCK_AB, Src Homology 3 domain of Class A and B Dedicator of Cytokinesis proteins

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC---HGQYGLFPANYVSLQ 524
            VA+Y++Q   + ++S    D +  +E   EGW+RG+        G+FP +YV ++
Sbjct: 2   GVAIYNFQGDGEHQLSLQVGDTVQILE-ECEGWYRGFSLRNKSLKGIFPKSYVHIK 56

DOCK proteins are atypical guanine nucleotide exchange factors (GEFs) that lack the conventional Dbl homology (DH) domain. They are divided into four classes (A-D) based on sequence similarity and domain architecture: class A includes Dock1, 2 and 5; class B includes Dock3 and 4; class C includes Dock6, 7, and 8; and class D includes Dock9, 10 and 11. All DOCKs contain two homology domains: the DHR-1 (Dock homology region-1), also called CZH1 (CED-5, Dock180, and MBC-zizimin homology 1), and DHR-2 (also called CZH2 or Docker). The DHR-1 domain binds phosphatidylinositol-3,4,5-triphosphate while DHR-2 contains the catalytic activity for Rac and/or Cdc42. This subfamily includes only Class A and B DOCKs, which also contain an SH3 domain at the N-terminal region and a PxxP motif at the C-terminus. Class A/B DOCKs are mostly specific GEFs for Rac, except Dock4 which activates the Ras family GTPase Rap1, probably indirectly through interaction with Rap regulatory proteins. The SH3 domain of class A/B DOCKs have been shown to bind Elmo, a scaffold protein that promotes GEF activity of DOCKs by releasing DHR-2 autoinhibition by the intramolecular SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212946 cd12013, SH3_RIM-BP_3, Third Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 8/57 (14%)

Query: 473 VALYDY-------QASADDEISFDPDDIITNI-EMIDEGWWRGYCHGQYGLFPANYV 521
           VAL+DY          A+ E+SF   DIIT   EM ++G++ G  +GQ GL P+N++
Sbjct: 3   VALFDYDPRESSPNVDAEVELSFRAGDIITVFGEMDEDGFYYGELNGQRGLVPSNFL 59

RIMs binding proteins (RBPs, RIM-BPs) associate with calcium channels present in photoreceptors, neurons, and hair cells; they interact simultaneously with specific calcium channel subunits, and active zone proteins, RIM1 and RIM2. RIMs are part of the matrix at the presynaptic active zone and are associated with synaptic vesicles through their interaction with the small GTPase Rab3. RIM-BPs play a role in regulating synaptic transmission by serving as adaptors and linking calcium channels with the synaptic vesicle release machinery. RIM-BPs contain three SH3 domains and two to three fibronectin III repeats. Invertebrates contain one, while vertebrates contain at least two RIM-BPs, RIM-BP1 and RIM-BP2. RIM-BP1 is also called peripheral-type benzodiazapine receptor associated protein 1 (PRAX-1). Mammals contain a third protein, RIM-BP3. RIM-BP1 and RIM-BP2 are predominantly expressed in the brain where they display overlapping but distinct expression patterns, while RIM-BP3 is almost exclusively expressed in the testis and is essential in spermiogenesis. The SH3 domains of RIM-BPs bind to the PxxP motifs of RIM1, RIM2, and L-type (alpha1D) and N-type (alpha1B) calcium channel subunits. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212918 cd11985, SH3_Stac2_C, C-terminal Src homology 3 domain of SH3 and cysteine-rich domain-containing protein 2 (Stac2)

 Score = 42.6 bits (100), Expect = 1e-05
 Identities = 16/51 (31%), Positives = 29/51 (56%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           + VALY +    ++++   P D +  ++  +E WW+G    + G FPAN+V
Sbjct: 1   SYVALYKFLPQENNDLPLQPGDRVMVVDDSNEDWWKGKSGDRVGFFPANFV 51

Stac proteins are putative adaptor proteins that contain a cysteine-rich C1 domain and one or two SH3 domains at the C-terminus. There are three mammalian members (Stac1, Stac2, and Stac3) of this family. Stac2 contains a single SH3 domain at the C-terminus unlike Stac1 and Stac3, which contain two C-terminal SH3 domains. Stac1 and Stac2 have been found to be expressed differently in mature dorsal root ganglia (DRG) neurons. Stac1 is mainly expressed in peptidergic neurons while Stac2 is found in a subset of nonpeptidergic and all trkB+ neurons. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212701 cd11767, SH3_Nck_3, Third Src Homology 3 domain of Nck adaptor proteins

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEM--IDEGWWRGY-CHGQYGLFPANYVSL 523
            VALY +    D+E+SF+  + +  IE    D  WW+     G  GL P NYV +
Sbjct: 2   VVALYPFTGENDEELSFEKGERLEIIEKPEDDPDWWKARNALGTTGLVPRNYVEV 56

This group contains the third SH3 domain of Nck, the first SH3 domain of Caenorhabditis elegans Ced-2 (Cell death abnormality protein 2), and similar domains. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The third SH3 domain of Nck appears to prefer ligands with a PxAPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. Ced-2 is a cell corpse engulfment protein that interacts with Ced-5 in a pathway that regulates the activation of Ced-10, a Rac small GTPase. Length = 56

>gnl|CDD|212783 cd11849, SH3_SPIN90, Src homology 3 domain of SH3 protein interacting with Nck, 90 kDa (SPIN90)

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYV 521
           ALYD++++  + +SF   +    +E  +  WW      G+ G  PANYV
Sbjct: 4   ALYDFKSAEPNTLSFSEGETFLLLERSNAHWWLVTNHSGETGYVPANYV 52

SPIN90 is also called NCK interacting protein with SH3 domain (NCKIPSD), Dia-interacting protein (DIP), 54 kDa vimentin-interacting protein (VIP54), or WASP-interacting SH3-domain protein (WISH). It is an F-actin binding protein that regulates actin polymerization and endocytosis. It associates with the Arp2/3 complex near actin filaments and determines filament localization at the leading edge of lamellipodia. SPIN90 is expressed in the early stages of neuronal differentiation and plays a role in regulating growth cone dynamics and neurite outgrowth. It also interacts with IRSp53 and regulates cell motility by playing a role in the formation of membrane protrusions. SPIN90 contains an N-terminal SH3 domain, a proline-rich domain, and a C-terminal VCA (verprolin-homology and cofilin-like acidic) domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212716 cd11782, SH3_Sorbs_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 20/50 (40%), Positives = 29/50 (58%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           A A Y++ A    E+SF   D+IT    +DE W+ G   G+ G+FP +YV
Sbjct: 2   ARAKYNFNADTGVELSFRKGDVITLTRRVDENWYEGRIGGRQGIFPVSYV 51

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the second SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 47.4 bits (112), Expect = 2e-05
 Identities = 36/192 (18%), Positives = 82/192 (42%), Gaps = 2/192 (1%)

Query: 277  AKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKKLNGHSDVPL 336
            A+      R+ + + +E RK  +    E+ +K +E + +E K K +E +KK         
Sbjct: 1260 ARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADE 1319

Query: 337  SPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQ 396
            +              K+   +      + K E E         E K +  E+K+E  K+ 
Sbjct: 1320 AKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK- 1378

Query: 397  IRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQERLMEELR 456
             +    ++  ++KK+ +E ++K +E+ +K    K+    + KA+E  +  E+++  +E +
Sbjct: 1379 -KADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAK 1437

Query: 457  QQGTNEDTEEDL 468
            ++       ++ 
Sbjct: 1438 KKAEEAKKADEA 1449

Length = 2084

>gnl|CDD|212909 cd11976, SH3_VAV1_2, C-terminal (or second) Src homology 3 domain of VAV1 protein

 Score = 42.2 bits (99), Expect = 2e-05
 Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDE-GWWRGYCHGQYGLFPANYV 521
           TA A YD+ A    E+S    DII  +    + GWWRG  +G+ G FPANYV
Sbjct: 1   TAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRVGWFPANYV 52

VAV1 is expressed predominantly in the hematopoietic system and it plays an important role in the development and activation of B and T cells. It is activated by tyrosine phosphorylation to function as a guanine nucleotide exchange factor (GEF) for Rho GTPases following cell surface receptor activation, triggering various effects such as cytoskeletal reorganization, transcription regulation, cell cycle progression, and calcium mobilization. It also serves as a scaffold protein and has been shown to interact with Ku70, Socs1, Janus kinase 2, SIAH2, S100B, Abl gene, ZAP-70, SLP76, and Syk, among others. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The C-terminal SH3 domain of Vav1 interacts with a wide variety of proteins including cytoskeletal regulators (zyxin), RNA-binding proteins (Sam68), transcriptional regulators, viral proteins, and dynamin 2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212931 cd11998, SH3_PACSIN1-2, Src homology 3 domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1) and PACSIN 2

 Score = 42.2 bits (99), Expect = 2e-05
 Identities = 26/50 (52%), Positives = 31/50 (62%), Gaps = 2/50 (4%)

Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDE-GWWRGYC-HGQYGLFPANYV 521
           ALYDY     DE+SF   D +T +E  DE GW +G    GQ GL+PANYV
Sbjct: 5   ALYDYDGQEQDELSFKAGDELTKLEDEDEQGWCKGRLDSGQVGLYPANYV 54

PACSIN 1 or Syndapin I (Synaptic dynamin-associated protein I) is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropathology of Huntington's disease. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSINs act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212705 cd11771, SH3_Pex13p_fungal, Src Homology 3 domain of fungal peroxisomal membrane protein Pex13p

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 7/57 (12%)

Query: 474 ALYDYQASADD-EISFDPDDII-----TNIEMIDEGWWRGYCH-GQYGLFPANYVSL 523
           ALYD+     + E+S    DI+     T+    D  WW+G    G+ G FP+NYV +
Sbjct: 4   ALYDFTPENPEMELSLKKGDIVAVLSKTDPLGRDSEWWKGRTRDGRIGWFPSNYVEV 60

Pex13p, located in the peroxisomal membrane, contains two transmembrane regions and a C-terminal SH3 domain. It binds to the peroxisomal targeting type I (PTS1) receptor Pex5p and the docking factor Pex14p through its SH3 domain. It is essential for both PTS1 and PTS2 protein import pathways into the peroxisomal matrix. Pex13p binds Pex14p, which contains a PxxP motif, in a classical fashion to the proline-rich ligand binding site of its SH3 domain. It binds the WxxxF/Y motif of Pex5p in a novel site that does not compete with Pex14p binding. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 60

>gnl|CDD|212717 cd11783, SH3_SH3RF_3, Third Src Homology 3 domain of SH3 domain containing ring finger 1 (SH3RF1), SH3RF3, and similar domains

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC--HGQYGLFPANYV 521
           VALY Y+    DE+     ++ T  E   +GW++G     GQ G+FP NYV
Sbjct: 3   VALYPYKPQKPDELELRKGEMYTVTEKCQDGWFKGTSLRTGQSGVFPGNYV 53

SH3RF1 (or POSH) and SH3RF3 (or POSH2) are scaffold proteins that function as E3 ubiquitin-protein ligases. They contain an N-terminal RING finger domain and four SH3 domains. This model represents the third SH3 domain, located in the middle of SH3RF1 and SH3RF3, and similar domains. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212935 cd12002, SH3_NEDD9, Src homology 3 domain of CAS (Crk-Associated Substrate) scaffolding protein family member, Neural precursor cell Expressed, Developmentally Down-regulated 9

 Score = 41.9 bits (98), Expect = 2e-05
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMID---EGWWRGYCHGQYGLFPANYVSL 523
           A ALYD      +E++F   DI+T IE      EGWW    HG+ G+ P N + L
Sbjct: 2   ARALYDNVPECAEELAFRKGDILTVIEQNTGGLEGWWLCSLHGRQGIAPGNRLKL 56

NEDD9 is also called human enhancer of filamentation 1 (HEF1) or CAS-L (Crk-associated substrate in lymphocyte). It was first described as a gene predominantly expressed in early embryonic brain, and was also isolated from a screen of human proteins that regulate filamentous budding in yeast, and as a tyrosine phosphorylated protein in lymphocytes. It promotes metastasis in different solid tumors. NEDD9 localizes in focal adhesions and associates with FAK and Abl kinase. It also interacts with SMAD3 and the proteasomal machinery which allows its rapid turnover; these interactions are not shared by other CAS proteins. CAS proteins function as molecular scaffolds to regulate protein complexes that are involved in many cellular processes. They share a common domain structure that includes an N-terminal SH3 domain, an unstructured substrate domain that contains many YxxP motifs, a serine-rich four-helix bundle, and a FAT-like C-terminal domain. The SH3 domain of CAS proteins binds to diverse partners including FAK, FRNK, Pyk2, PTP-PEST, DOCK180, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212708 cd11774, SH3_Sla1p_2, Second Src Homology 3 domain of the fungal endocytic adaptor protein Sla1p

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHG-QYGLFPANYV 521
            A ALYDY    ++E+SF+  D +   +  D  W     +G Q+G  PANY+
Sbjct: 1   QAKALYDYDKQTEEELSFNEGDTLDVYDDSDSDWILVGFNGTQFGFVPANYI 52

Sla1p facilitates endocytosis by playing a role as an adaptor protein in coupling components of the actin cytoskeleton to the endocytic machinery. It interacts with Abp1p, Las17p and Pan1p, which are activator proteins of actin-related protein 2/3 (Arp2/3). Sla1p contains multiple domains including three SH3 domains, a SAM (sterile alpha motif) domain, and a Sla1 homology domain 1 (SHD1), which binds to the NPFXD motif that is found in many integral membrane proteins such as the Golgi-localized Arf-binding protein Lsb5p and the P4-ATPases, Drs2p and Dnf1p. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212921 cd11988, SH3_Intersectin2_1, First Src homology 3 domain (or SH3A) of Intersectin-2

 Score = 42.2 bits (99), Expect = 2e-05
 Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 10/54 (18%)

Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDE------GWWRGYCHGQYGLFPANYV 521
           ALY ++A   DE+SF+  DII     +DE      GW  G   G +G FP NYV
Sbjct: 6   ALYPFEARNHDEMSFNAGDII----QVDEKTVGEPGWLYGSFQGNFGWFPCNYV 55

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The first SH3 domain (or SH3A) of ITSN2 is expected to bind many protein partners, similar to ITSN1 which has been shown to bind Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212993 cd12060, SH3_alphaPIX, Src Homology 3 domain of alpha-Pak Interactive eXchange factor

 Score = 41.9 bits (98), Expect = 2e-05
 Identities = 18/48 (37%), Positives = 30/48 (62%)

Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           A ++++ + +DE+S    DII    + + GWW G  +G+ G FP+NYV
Sbjct: 6   ARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGKTGWFPSNYV 53

Alpha-PIX, also called Rho guanine nucleotide exchange factor 6 (ARHGEF6) or Cool (Cloned out of Library)-2, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and is localized in dendritic spines where it regulates spine morphogenesis. It controls dendritic length and spine density in the hippocampus. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212934 cd12001, SH3_BCAR1, Src homology 3 domain of the CAS (Crk-Associated Substrate) scaffolding protein family member, Breast Cancer Anti-estrogen Resistance 1

 Score = 42.0 bits (98), Expect = 2e-05
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 468 LGYTAVALYDYQASADDEISFDPDDIITNIEMIDE---GWWRGYCHGQYGLFPANYVSL 523
           L   A ALYD  A + DE+SF   DI+T +E   +   GWW    HG+ G+ P N + +
Sbjct: 1   LNVLAKALYDNVAESPDELSFRKGDIMTVLERDTQGLDGWWLCSLHGRQGIVPGNRLKI 59

BCAR1, also called p130cas or CASS1, is the founding member of the CAS family of scaffolding proteins and was originally identified through its ability to associate with Crk. The name BCAR1 was designated because the human gene was identified in a screen for genes that promote resistance to tamoxifen. It is widely expressed and its deletion is lethal in mice. It plays a role in regulating cell motility, survival, proliferation, transformation, cancer progression, and bacterial pathogenesis. CAS proteins function as molecular scaffolds to regulate protein complexes that are involved in many cellular processes. They share a common domain structure that includes an N-terminal SH3 domain, an unstructured substrate domain that contains many YxxP motifs, a serine-rich four-helix bundle, and a FAT-like C-terminal domain. The SH3 domain of CAS proteins binds to diverse partners including FAK, FRNK, Pyk2, PTP-PEST, DOCK180, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 68

>gnl|CDD|212773 cd11839, SH3_Intersectin_4, Fourth Src homology 3 domain (or SH3D) of Intersectin

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHG-----QYGLFPANYVSL 523
           A  +  + A+A++++S     ++   +    GWW G         Q G FPANYV L
Sbjct: 2   AQVIAPFTATAENQLSLAVGQLVLVRKKSPSGWWEGELQARGKKRQIGWFPANYVKL 58

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fourth SH3 domain (or SH3D) of ITSN1 has been shown to bind SHIP2, Numb, CdGAP, and N-WASP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 4/85 (4%)

Query: 361 IQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQ 420
            Q   K  +  E+QR  +E+ + +EL++K+    EQ R+K+ ++  ++   QE+K++ E+
Sbjct: 67  QQQQQKSAKRAEEQRKKKEQQQAEELQQKQA--AEQERLKQLEK--ERLAAQEQKKQAEE 122

Query: 421 EENQKLLLKKQQEEDRLKAEEQARL 445
              Q  L +KQ EE   KA   A+ 
Sbjct: 123 AAKQAALKQKQAEEAAAKAAAAAKA 147

Length = 387

>gnl|CDD|212924 cd11991, SH3_Intersectin1_3, Third Src homology 3 domain (or SH3C) of Intersectin-1

 Score = 41.1 bits (96), Expect = 3e-05
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           VA+Y Y+++   +++F   D+I   +  D  WW G    + G+FP+NYV  
Sbjct: 3   VAMYTYESNEQGDLTFQQGDVILVTKK-DGDWWTGTVGDKTGVFPSNYVRP 52

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The third SH3 domain (or SH3C) of ITSN1 has been shown to bind many proteins including dynamin1/2, CIN85, c-Cbl, SHIP2, Reps1, synaptojanin-1, and WNK, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212725 cd11791, SH3_UBASH3, Src homology 3 domain of Ubiquitin-associated and SH3 domain-containing proteins, also called TULA (T cell Ubiquitin LigAnd) family of proteins

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 6/54 (11%)

Query: 474 ALYDYQASADDEISFDPDDII----TNIEMIDEGWWRGYCH--GQYGLFPANYV 521
            LY Y    +DE+   P D I      ++   +GW  G     G  GL P NY 
Sbjct: 4   VLYPYTPQEEDELELVPGDYIYVSPEELDSSSDGWVEGTSWLTGCSGLLPENYT 57

UBASH3 or TULA proteins are also referred to as Suppressor of T cell receptor Signaling (STS) proteins. They contain an N-terminal UBA domain, a central SH3 domain, and a C-terminal histidine phosphatase domain. They bind c-Cbl through the SH3 domain and to ubiquitin via UBA. In some vertebrates, there are two TULA family proteins, called UBASH3A (also called TULA or STS-2) and UBASH3B (also called TULA-2 or STS-1), which show partly overlapping as well as distinct functions. UBASH3B is widely expressed while UBASH3A is only found in lymphoid cells. UBASH3A facilitates apoptosis induced in T cells through its interaction with the apoptosis-inducing factor AIF. UBASH3B is an active phosphatase while UBASH3A is not. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212911 cd11978, SH3_VAV3_2, C-terminal (or second) Src homology 3 domain of VAV3 protein

 Score = 41.2 bits (96), Expect = 3e-05
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 472 AVALYDYQASADDEISFDPDDIIT-NIEMIDEGWWRGYCHGQYGLFPANYV 521
           A+A YD+ A    E+S    D++    +M   GWWRG  +G+ G FP+ YV
Sbjct: 3   AIARYDFCARDMRELSLLKGDVVKIYTKMSTNGWWRGEVNGRVGWFPSTYV 53

VAV3 is ubiquitously expressed and functions as a phosphorylation-dependent guanine nucleotide exchange factor (GEF) for RhoA, RhoG, and Rac1. It has been implicated to function in the hematopoietic, bone, cerebellar, and cardiovascular systems. VAV3 is essential in axon guidance in neurons that control blood pressure and respiration. It is overexpressed in prostate cancer cells and it plays a role in regulating androgen receptor transcriptional activity. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212910 cd11977, SH3_VAV2_2, C-terminal (or second) Src homology 3 domain of VAV2 protein

 Score = 41.2 bits (96), Expect = 3e-05
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMI--DEGWWRGYCHGQYGLFPANYV 521
           TAVA Y++ A    E+S    D++     I  D+GWW+G  +G+ G FP+ YV
Sbjct: 2   TAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYV 54

VAV2 is widely expressed and functions as a guanine nucleotide exchange factor (GEF) for RhoA, RhoB and RhoG and also activates Rac1 and Cdc42. It is implicated in many cellular and physiological functions including blood pressure control, eye development, neurite outgrowth and branching, EGFR endocytosis and degradation, and cell cluster morphology, among others. It has been reported to associate with Nek3. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212731 cd11797, SH3_DNMBP_N4, Fourth N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 40.9 bits (96), Expect = 3e-05
 Identities = 18/46 (39%), Positives = 27/46 (58%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFP 517
            VALY +QA   +E+ F+  D I  I  +++GW  G   G+ G+FP
Sbjct: 2   GVALYRFQALEPNELDFEVGDRIRIIATLEDGWLEGELKGRRGIFP 47

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP bind the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 46.3 bits (109), Expect = 4e-05
 Identities = 44/200 (22%), Positives = 88/200 (44%), Gaps = 8/200 (4%)

Query: 265  KPSNLRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEI 324
            K    + K E L K+  EE +K  E +K + + K +   E  +  E+++ +E   K EE 
Sbjct: 1627 KAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEED 1686

Query: 325  EKKLNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRK 384
            EKK                    + + K+   +    +   K EEE + +    EE K++
Sbjct: 1687 EKK-----AAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIK---AEEAKKE 1738

Query: 385  ELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQAR 444
              E K++ E+ +   +E+++    KKE+E+K  + ++E + ++ ++  EED  +  E  +
Sbjct: 1739 AEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDK 1798

Query: 445  LLEQERLMEELRQQGTNEDT 464
             ++          +G  E  
Sbjct: 1799 KIKDIFDNFANIIEGGKEGN 1818

Length = 2084

>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 10/93 (10%)

Query: 361 IQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKE- 419
           I+    + E  E ++ +  E +++E +  E  E+        QE++K+  E+ E ER++ 
Sbjct: 206 IEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSY------QEHVKQLIEKMEAEREKL 259

Query: 420 QEENQKLLLKKQQE-EDRLKA--EEQARLLEQE 449
             E +++L  K QE E+ LK   + +A  L++E
Sbjct: 260 LAEQERMLEHKLQEQEELLKEGFKTEAESLQKE 292

Transcription of the anti-viral guanylate-binding protein (GBP) is induced by interferon-gamma during macrophage induction. This family contains GBP1 and GPB2, both GTPases capable of binding GTP, GDP and GMP. Length = 297

>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 43/230 (18%), Positives = 83/230 (36%), Gaps = 28/230 (12%)

Query: 237 SKVKDLIAANSTNASKENIKPKPNIGHVKPSNLRAKFENLAKQTEEESRKRSEEEKEKRK 296
              +  + ++ T  SK        +   + S L  +          E+  ++     +  
Sbjct: 58  RDPQISVVSSVTKLSKGPKDEPKQVKIPRQSGLSEE--------VAEAEAKATSVAAEAT 109

Query: 297 LKDQIDLEQAQKLEERRLSELKIKEE-----EIEKKLNGHSDV-PLSPSTETPPVPVKSI 350
               I  E  + LEE     LK         E+    N   D        +     + S 
Sbjct: 110 TPKSIQ-ELVEALEELLEELLKETASDPVVQELVSIFNDLIDSIKEDNLKDDLESLIASA 168

Query: 351 LKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKK 410
            ++       +     EEEE+     ++  +K K  E   +LE+E +   E +E   +K+
Sbjct: 169 KEELDQLSKKLAELKAEEEEE-----LERALKEKREELLSKLEEELLARLESKEAALEKQ 223

Query: 411 EQEEKERKEQEENQKLLLKKQQEEDRLKAE-EQARLLEQERLMEELRQQG 459
            + E ER+++E  +K        E++L+ E E+     +++L  EL  Q 
Sbjct: 224 LRLEFEREKEELRKKY-------EEKLRQELERQAEAHEQKLKNELALQA 266

Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains. Length = 493

>gnl|CDD|212817 cd11884, SH3_MYO15, Src Homology 3 domain of Myosin XV

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 472 AVALYDYQASADDEISFDPDDIIT---NIEMIDEGWWRGYCHGQYGLFPANYV 521
            VA+  Y       +SF   D+I        +D GW  G   G+ G FP  YV
Sbjct: 2   VVAVRAYITRDQTLLSFHKGDVIKLLPKEGPLDPGWLFGTLDGRSGAFPKEYV 54

This subfamily is composed of proteins with similarity to Myosin XVa. Myosin XVa is an unconventional myosin that is critical for the normal growth of mechanosensory stereocilia of inner ear hair cells. Mutations in the myosin XVa gene are associated with nonsyndromic hearing loss. Myosin XVa contains a unique N-terminal extension followed by a motor domain, light chain-binding IQ motifs, and a tail consisting of a pair of MyTH4-FERM tandems separated by a SH3 domain, and a PDZ domain. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 56

>gnl|CDD|212789 cd11855, SH3_Sho1p, Src homology 3 domain of High osmolarity signaling protein Sho1p

 Score = 40.5 bits (95), Expect = 6e-05
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 471 TAVALYDYQASADD--EISFDPDDIITNIEMIDEGWWRG-YCHGQYGLFPANYVSL 523
            A ALY Y AS DD  E+SF+  +I+  +      WW+    +G+ G+ P+NY+ L
Sbjct: 1   RARALYPYDASPDDPNELSFEKGEIL-EVSDTSGKWWQARKSNGETGICPSNYLQL 55

Sho1p (or Sho1), also called SSU81 (Suppressor of SUA8-1 mutation), is a yeast membrane protein that regulates adaptation to high salt conditions by activating the HOG (high-osmolarity glycerol) pathway. High salt concentrations lead to the localization to the membrane of the MAPKK Pbs2, which is then activated by the MAPKK Ste11 and in turn, activates the MAPK Hog1. Pbs2 is localized to the membrane though the interaction of its PxxP motif with the SH3 domain of Sho1p. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212703 cd11769, SH3_CSK, Src Homology 3 domain of C-terminal Src kinase

 Score = 40.4 bits (95), Expect = 6e-05
 Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 2/56 (3%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMI-DEGWWRG-YCHGQYGLFPANYVS 522
           G   +A Y++  ++++++ F   DI+T + +  D  W++     G+ G+ PANYV 
Sbjct: 1   GTECIAKYNFNGASEEDLPFKKGDILTIVAVTKDPNWYKAKNKDGREGMIPANYVQ 56

CSK is a cytoplasmic (or nonreceptor) tyr kinase containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, CSK is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. CSK catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. It is expressed in a wide variety of tissues and plays a role, as a regulator of Src, in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, CSK also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 45.5 bits (107), Expect = 7e-05
 Identities = 58/253 (22%), Positives = 116/253 (45%), Gaps = 23/253 (9%)

Query: 218  EKVDKHQSQKDDNRQVVTSSKVKDLIAANSTNASKENIKPKPNIGHVKPSNLRAKFENLA 277
            +K D  + + ++ ++   ++K +   AA+   A++E    K      K    + K +   
Sbjct: 1329 KKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE----KAEAAEKKKEEAKKKADAAK 1384

Query: 278  KQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKKLNGHSDVPLS 337
            K+ EE+ +K  E +K+  + K + D  +     +++  E K K EE +K          +
Sbjct: 1385 KKAEEK-KKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEA 1443

Query: 338  PSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERK--EELEKE 395
               +          K+   +    + + K+ EE +K     +E K+K  E K  +E +K+
Sbjct: 1444 KKADE--------AKKKAEEAKKAEEAKKKAEEAKKA----DEAKKKAEEAKKADEAKKK 1491

Query: 396  QIRIKEEQENIKKKKEQEEK--ERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQERLME 453
                K++ +  KK  E ++K  E K+ EE +K    K+ EE + KA+E A+  E+++  +
Sbjct: 1492 AEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAK-KADE-AKKAEEKKKAD 1549

Query: 454  ELRQQGTNEDTEE 466
            EL++    +  EE
Sbjct: 1550 ELKKAEELKKAEE 1562

Length = 2084

>gnl|CDD|212740 cd11806, SH3_PRMT2, Src homology 3 domain of Protein arginine N-methyltransferase 2

 Score = 40.5 bits (95), Expect = 7e-05
 Identities = 14/50 (28%), Positives = 26/50 (52%)

Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS 522
           VA+ D+ A+ D ++SF+  D +  +      WW    +G  G  PA+++ 
Sbjct: 3   VAIADFVATDDSQLSFESGDKLLVLRKPSVDWWWAEHNGCCGYIPASHLH 52

PRMT2, also called HRMT1L1, belongs to the arginine methyltransferase protein family. It functions as a coactivator to both estrogen receptor alpha (ER-alpha) and androgen receptor (AR), presumably through arginine methylation. The ER-alpha transcription factor is involved in cell proliferation, differentiation, morphogenesis, and apoptosis, and is also implicated in the development and progression of breast cancer. PRMT2 and its variants are upregulated in breast cancer cells and may be involved in modulating the ER-alpha signaling pathway during formation of breast cancer. PRMT2 also plays a role in regulating the function of E2F transcription factors, which are critical cell cycle regulators, by binding to the retinoblastoma gene product (RB). It contains an N-terminal SH3 domain and an AdoMet binding domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212763 cd11829, SH3_GAS7, Src homology 3 domain of Growth Arrest Specific protein 7

 Score = 40.2 bits (94), Expect = 7e-05
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 474 ALYDYQASADDE-ISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
            LY +      + +SF+  ++I  ++  D GWW G   G  G FPA+YV
Sbjct: 4   TLYAFTGEQHQQGLSFEAGELIRVLQAPDGGWWEGEKDGLRGWFPASYV 52

GAS7 is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212852 cd11919, SH3_Sorbs1_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin

 Score = 40.3 bits (94), Expect = 8e-05
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           A A +D++A    E+     DI+   + ID+ W+ G  HG+ G+FP +Y+ L
Sbjct: 3   ARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRSYIEL 54

Sorbs1 is also called ponsin, SH3P12, or CAP (c-Cbl associated protein). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It binds Cbl and plays a major role in regulating the insulin signaling pathway by enhancing insulin-induced phosphorylation of Cbl. Sorbs1, like vinexin, localizes at cell-ECM and cell-cell adhesion sites where it binds vinculin, paxillin, and afadin. It may function in the control of cell motility. Other interaction partners of Sorbs1 include c-Abl, Sos, flotillin, Grb4, ataxin-7, filamin C, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 45.1 bits (107), Expect = 8e-05
 Identities = 45/232 (19%), Positives = 100/232 (43%), Gaps = 12/232 (5%)

Query: 230 NRQVVTSSKVKDLIAANSTNASKENIKPKPNIGHVKPSNLRAKFENLAKQTEEESRKRSE 289
              +     +K+ +            + +     ++   L+ +   L  + +E      E
Sbjct: 518 IELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEE 577

Query: 290 EEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKKLNGHSDVPLSPSTETPPVPVKS 349
               + + ++  +L +  K  +++L EL+ +  ++E+ L            E     ++S
Sbjct: 578 LRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELES 637

Query: 350 ILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKK 409
            L++           N + E +E  +   EE++ K  E + E+ +E  RI+ E++  +K 
Sbjct: 638 ELEK----------LNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKL 687

Query: 410 KEQEEKERKEQEENQKL--LLKKQQEEDRLKAEEQARLLEQERLMEELRQQG 459
           +E E+ E + ++  ++L  LLKK  E ++L  E ++R  E E L +EL +  
Sbjct: 688 EELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLE 739

Length = 908

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 45.0 bits (106), Expect = 9e-05
 Identities = 41/224 (18%), Positives = 86/224 (38%), Gaps = 9/224 (4%)

Query: 218  EKVDKHQSQKDDNRQVVTSSKVKDLIAANSTNASKENIKPKPNIGHVKPSNLRAKFENLA 277
            E+  K +++  +  Q++   + K         A +   + K      +      +     
Sbjct: 808  EEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKE 867

Query: 278  KQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKKLNGHSDVPLS 337
            +  +E   K  E E++K K + +   E+ ++ ++    E +      EK+      +   
Sbjct: 868  ELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKDNLLEEKENEIEERIAEE 927

Query: 338  PSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQI 397
                         L    +D    +  NKEEEE+  +R+         L  KEEL    +
Sbjct: 928  AIILLKYESEPEELLLEEADEKEKEEDNKEEEEERNKRL---------LLAKEELGNVNL 978

Query: 398  RIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEE 441
                E E  +++  ++E +++  EE +K LL++  EE   + +E
Sbjct: 979  MAIAEFEEKEERYNKDELKKERLEEEKKELLREIIEETCQRFKE 1022

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 40/200 (20%), Positives = 88/200 (44%), Gaps = 5/200 (2%)

Query: 269 LRAKFENLAKQTEEESRKRSEEEKEKRKLKDQID-LEQAQKLEERRLSELKIKEEEIEKK 327
           LR + E L ++  E   +  E E E   L+++++ LE   +  E RL ELK K E ++++
Sbjct: 279 LREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEE 338

Query: 328 LNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELE 387
           L     +          +  +   ++       +    +E  E  ++ + + E +  E+ 
Sbjct: 339 LEERETLLEELEQLLAEL--EEAKEELEEKLSALLEELEELFEALREELAELEAELAEIR 396

Query: 388 RKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLE 447
            + E  K +I  +  +E +++  E+ E  ++E +E +  L + Q E + L  E +    +
Sbjct: 397 NELEELKREI--ESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQ 454

Query: 448 QERLMEELRQQGTNEDTEED 467
            E L + L++        ++
Sbjct: 455 LEELRDRLKELERELAELQE 474

Length = 1163

>gnl|CDD|212920 cd11987, SH3_Intersectin1_1, First Src homology 3 domain (or SH3A) of Intersectin-1

 Score = 40.0 bits (93), Expect = 1e-04
 Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 10/53 (18%)

Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDE------GWWRGYCHGQYGLFPANY 520
           ALY ++A + DEI+  P DI+    M+DE      GW  G   G+ G FPANY
Sbjct: 4   ALYPFEARSHDEITIQPGDIV----MVDESQTGEPGWLGGELKGKTGWFPANY 52

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The first SH3 domain (or SH3A) of ITSN1 has been shown to bind many proteins including Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212707 cd11773, SH3_Sla1p_1, First Src Homology 3 domain of the fungal endocytic adaptor protein Sla1p

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 7/54 (12%)

Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWR-------GYCHGQYGLFPANY 520
           ALYDY+   +DE++   DDI+  +E  D+ WW+              GL PA Y
Sbjct: 4   ALYDYEPQTEDELTIQEDDILYLLEKSDDDWWKVKLKVNSSDDDEPVGLVPATY 57

Sla1p facilitates endocytosis by playing a role as an adaptor protein in coupling components of the actin cytoskeleton to the endocytic machinery. It interacts with Abp1p, Las17p and Pan1p, which are activator proteins of actin-related protein 2/3 (Arp2/3). Sla1p contains multiple domains including three SH3 domains, a SAM (sterile alpha motif) domain, and a Sla1 homology domain 1 (SHD1), which binds to the NPFXD motif that is found in many integral membrane proteins such as the Golgi-localized Arf-binding protein Lsb5p and the P4-ATPases, Drs2p and Dnf1p. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212986 cd12053, SH3_CD2AP_1, First Src Homology 3 domain (SH3A) of CD2-associated protein

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 476 YDYQASADDEISFDPDDIITNIEMIDE-GWWRGYCHGQYGLFPANYV 521
           YDY A  +DE++    +II N++ ++E GW  G  +G+ G+FP N+V
Sbjct: 6   YDYDAVHEDELTIRVGEIIRNVKKLEEEGWLEGELNGRRGMFPDNFV 52

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the first SH3 domain (SH3A) of CD2AP. SH3A binds to the PXXXPR motif present in c-Cbl and the cytoplasmic domain of cell adhesion protein CD2. Its interaction with CD2 anchors CD2 at sites of cell contact. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212880 cd11947, SH3_GRAP2_N, N-terminal Src homology 3 domain of GRB2-related adaptor protein 2

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           A   +D+ AS +DE+SF   D++  I   D+ W++   +G+ G  P N+V
Sbjct: 2   ARGKFDFTASGEDELSFKKGDVL-KILSSDDIWFKAELNGEEGYVPKNFV 50

GRAP2 is also called GADS (GRB2-related adapter downstream of Shc), GrpL, GRB2L, Mona, or GRID (Grb2-related protein with insert domain). It is expressed specifically in the hematopoietic system. It plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. It also have roles in antigen-receptor and tyrosine kinase mediated signaling. GRAP2 is unique from other GRB2-like adaptor proteins in that it can be regulated by caspase cleavage. It contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The N-terminal SH3 domain of the related protein GRB2 binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 51/195 (26%), Positives = 92/195 (47%), Gaps = 11/195 (5%)

Query: 268 NLRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEER-RLSELKIKEEEIEK 326
           NL  + E L  Q EE   K  E  +E  +L+++++  + +       L EL+ + EE+E 
Sbjct: 313 NLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELES 372

Query: 327 KLNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKEL 386
           +L    +   +  ++     V  +  Q  S    I+      E  E +R   ++   + L
Sbjct: 373 RLEELEEQLETLRSK-----VAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELL 427

Query: 387 ERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQ--EENQKLLLKKQQEEDRLKAEE--- 441
           ++ EE E ++++ + E+   + ++ QEE ER E+  EE ++ L + +Q  D  + E    
Sbjct: 428 KKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQL 487

Query: 442 QARLLEQERLMEELR 456
           QARL   ERL E L 
Sbjct: 488 QARLDSLERLQENLE 502

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 40/217 (18%), Positives = 83/217 (38%), Gaps = 29/217 (13%)

Query: 268 NLRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLE-ERRLSELKIKEEEIEK 326
            L  K E L ++  E  +  +E  KE  +L+++++  + +  E  R++S L+     +E 
Sbjct: 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEA 740

Query: 327 KLNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKEL 386
           ++    +                           I   +KE  E E +    EE   +  
Sbjct: 741 EVEQLEE--------------------------RIAQLSKELTELEAEIEELEERLEEAE 774

Query: 387 ERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLL 446
           E   E E E   ++ + E +K++ +   +   E      LL ++           + R+ 
Sbjct: 775 EELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIA 834

Query: 447 EQERLMEELRQQGTNEDTEEDLGYTAVALYDYQASAD 483
             ER +E+L +Q   E+  ED+   A  + + +   +
Sbjct: 835 ATERRLEDLEEQ--IEELSEDIESLAAEIEELEELIE 869

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|212932 cd11999, SH3_PACSIN_like, Src homology 3 domain of an unknown subfamily of proteins with similarity to Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDE-GWWRGYCH-GQYGLFPANYV 521
           A+YDY     DE+SF   + +  +E  DE GW +G    G  GL+PANYV
Sbjct: 6   AVYDYTGQEPDELSFKAGEELLKVEDEDEQGWCKGVTDGGAVGLYPANYV 55

PACSINs, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212940 cd12007, SH3_Yes, Src homology 3 domain of Yes Protein Tyrosine Kinase

 Score = 39.6 bits (92), Expect = 1e-04
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWW--RGYCHGQYGLFPANYVS 522
           VALYDY+A   +++SF   +    I   +  WW  R    G+ G  P+NYV+
Sbjct: 4   VALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKNGYIPSNYVA 55

Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 40/188 (21%), Positives = 86/188 (45%), Gaps = 43/188 (22%)

Query: 268 NLRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKK 327
                 E LAK+  EE++K +E  K++  L+ + ++ + +   ER   ELK +  E+++ 
Sbjct: 25  KKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELER---ELKERRNELQRL 81

Query: 328 LNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELE 387
                                             +    + EE   ++M   + K + LE
Sbjct: 82  ----------------------------------ERRLLQREETLDRKMESLDKKEENLE 107

Query: 388 RKE-ELEKEQIRIKEEQENIKKKKEQEEKERKE-----QEENQKLLLKKQQEEDRLKAEE 441
           +KE EL  ++  + E++E +++   ++ +E +      QEE +++LL++ +EE R +A +
Sbjct: 108 KKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKEILLEEVEEEARHEAAK 167

Query: 442 QARLLEQE 449
             + +E+E
Sbjct: 168 LIKEIEEE 175

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 43/201 (21%), Positives = 85/201 (42%), Gaps = 3/201 (1%)

Query: 268 NLRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKK 327
            L  +   L ++ EE   +  E E+   +LK++I+  + +  E   L E   +     ++
Sbjct: 299 ELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEE 358

Query: 328 LNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELE 387
                +  LS   E      +++ ++       +     E EE +++    EE   +  E
Sbjct: 359 AKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSE 418

Query: 388 RKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLE 447
           R E+L++E   ++ E E ++ + E+  +E +E EE  + L  + +E   L+ E      E
Sbjct: 419 RLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKE---LERELAELQEE 475

Query: 448 QERLMEELRQQGTNEDTEEDL 468
            +RL +EL       D  E  
Sbjct: 476 LQRLEKELSSLEARLDRLEAE 496

Length = 1163

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 42/192 (21%), Positives = 86/192 (44%), Gaps = 13/192 (6%)

Query: 278 KQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKKLNGHSDVPLS 337
              +E   K   E  +   L+ Q ++++ ++  +    ELK  + E E+ L         
Sbjct: 677 LAEQELQEKAESELAKNEILRRQEEIKKKEQRIKE---ELKKLKLEKEELLADKVQEAQD 733

Query: 338 PSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQI 397
              E        +L+Q   +    +  ++ ++E+E++   +  +K KEL  +EE  ++  
Sbjct: 734 KINEEL-----KLLEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKL- 787

Query: 398 RIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARL--LEQERLMEEL 455
             K E+E  +K K QEE+ R  +EE ++     ++E+  ++ EE+ +   LE+  L  + 
Sbjct: 788 --KVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKE 845

Query: 456 RQQGTNEDTEED 467
            Q+      EE 
Sbjct: 846 EQKLEKLAEEEL 857

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|212879 cd11946, SH3_GRB2_N, N-terminal Src homology 3 domain of Growth factor receptor-bound protein 2

 Score = 39.2 bits (91), Expect = 2e-04
 Identities = 21/54 (38%), Positives = 36/54 (66%), Gaps = 1/54 (1%)

Query: 472 AVALYDYQASADDEISFDPDDIITNI-EMIDEGWWRGYCHGQYGLFPANYVSLQ 524
           A+A YD++A+ADDE+SF   DI+  + E  D+ W++   +G+ G  P NY+ ++
Sbjct: 3   AIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMK 56

GRB2 is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. It is ubiquitously expressed in all tissues throughout development and is important in cell cycle progression, motility, morphogenesis, and angiogenesis. In lymphocytes, GRB2 is associated with antigen receptor signaling components. GRB2 contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. Its N-terminal SH3 domain binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212862 cd11929, SH3_SH3RF2_1, First Src Homology 3 domain of SH3 domain containing ring finger 2

 Score = 39.2 bits (91), Expect = 2e-04
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           A AL +Y+     ++ F+  D+I     +DE W+ G  +G  G+FPA+ V +
Sbjct: 3   AKALCNYRGHNPGDLKFNKGDVILLRRQLDENWYLGEINGVSGIFPASSVEV 54

SH3RF2 is also called POSHER (POSH-eliminating RING protein) or HEPP1 (heart protein phosphatase 1-binding protein). It acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1 (or POSH), a scaffold protein that is required for pro-apoptotic JNK activation. It may also play a role in cardiac functions together with protein phosphatase 1. SH3RF2 contains an N-terminal RING finger domain and three SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212945 cd12012, SH3_RIM-BP_2, Second Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 9/59 (15%)

Query: 473 VALYDY--------QASADDEISFDPDDIITNIEMIDE-GWWRGYCHGQYGLFPANYVS 522
           VAL+DY          +A++E+ F    +I      D  G++ G  +G+ GL P N VS
Sbjct: 3   VALFDYDPLTMSPNPDAAEEELPFKEGQLIKVYGDKDADGFYLGEINGRRGLVPCNMVS 61

RIMs binding proteins (RBPs, RIM-BPs) associate with calcium channels present in photoreceptors, neurons, and hair cells; they interact simultaneously with specific calcium channel subunits, and active zone proteins, RIM1 and RIM2. RIMs are part of the matrix at the presynaptic active zone and are associated with synaptic vesicles through their interaction with the small GTPase Rab3. RIM-BPs play a role in regulating synaptic transmission by serving as adaptors and linking calcium channels with the synaptic vesicle release machinery. RIM-BPs contain three SH3 domains and two to three fibronectin III repeats. Invertebrates contain one, while vertebrates contain at least two RIM-BPs, RIM-BP1 and RIM-BP2. RIM-BP1 is also called peripheral-type benzodiazapine receptor associated protein 1 (PRAX-1). Mammals contain a third protein, RIM-BP3. RIM-BP1 and RIM-BP2 are predominantly expressed in the brain where they display overlapping but distinct expression patterns, while RIM-BP3 is almost exclusively expressed in the testis and is essential in spermiogenesis. The SH3 domains of RIM-BPs bind to the PxxP motifs of RIM1, RIM2, and L-type (alpha1D) and N-type (alpha1B) calcium channel subunits. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212845 cd11912, SH3_Bzz1_1, First Src Homology 3 domain of Bzz1 and similar domains

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 6/57 (10%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMID-EGWWR---GYCHGQYGLFPANYVSL 523
           TA  LYDY AS DDE+S    + +T +E  D  GW +   G   G+ GL P +Y+ +
Sbjct: 1   TAKVLYDYTASGDDEVSISEGEEVTVLEPDDGSGWTKVRNGS--GEEGLVPTSYIEI 55

Bzz1 (or Bzz1p) is a WASP/Las17-interacting protein involved in endocytosis and trafficking to the vacuole. It physically interacts with type I myosins and functions in the early steps of endocytosis. Together with other proteins, it induces membrane scission in yeast. Bzz1 contains an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), a central coiled-coil, and two C-terminal SH3 domains. This model represents the first C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 28/66 (42%), Positives = 44/66 (66%)

Query: 379 EEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLK 438
              KR +LE K+   +++   +EE+E  KK +E+ E ERKE+EE ++   KK++EE+R +
Sbjct: 4   GAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKE 63

Query: 439 AEEQAR 444
            EEQAR
Sbjct: 64  REEQAR 69

This is a family of proteins of approximately 300 residues, found in plants and vertebrates. They contain a highly conserved DDRGK motif. Length = 189

>gnl|CDD|212798 cd11864, SH3_PEX13_eumet, Src Homology 3 domain of eumetazoan Peroxisomal biogenesis factor 13

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 5/56 (8%)

Query: 471 TAVALYDYQASADDEISFDPDDIIT----NIEMIDEGWWRGYCHGQ-YGLFPANYV 521
            A A YD+ A ++DE+SF   D +      ++    GW      GQ  GL PANYV
Sbjct: 1   VARAEYDFVAESEDELSFRAGDKLRLAPKELQPRVRGWLLATVDGQKIGLVPANYV 56

PEX13 is a peroxin and is required for protein import into the peroxisomal matrix and membrane. It is an integral membrane protein that is essential for the localization of PEX14 and the import of proteins containing the peroxisome matrix targeting signals, PTS1 and PTS2. Mutations of the PEX13 gene in humans lead to a wide range of peroxisome biogenesis disorders (PBDs), the most severe of which is known as Zellweger syndrome (ZS), a severe multisystem disorder characterized by hypotonia, psychomotor retardation, and neuronal migration defects. PEX13 contains two transmembrane regions and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 43.6 bits (102), Expect = 3e-04
 Identities = 38/208 (18%), Positives = 95/208 (45%), Gaps = 4/208 (1%)

Query: 265  KPSNLRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEI 324
            + + ++A+    A + ++   K+  +E +K + K + D  + +  E ++  E K K EE 
Sbjct: 1268 RQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEA 1327

Query: 325  EKKLNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRK 384
            +KK +                  ++      ++    +    E++++E ++      K+ 
Sbjct: 1328 KKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKA 1387

Query: 385  ELERK-EELEKEQIRIKEEQENIKKKKEQEEKE---RKEQEENQKLLLKKQQEEDRLKAE 440
            E ++K +E +K+    K++ + +KK    ++K    +K+ EE +K    K++ E+  KA+
Sbjct: 1388 EEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKAD 1447

Query: 441  EQARLLEQERLMEELRQQGTNEDTEEDL 468
            E  +  E+ +  EE +++       ++ 
Sbjct: 1448 EAKKKAEEAKKAEEAKKKAEEAKKADEA 1475

Length = 2084

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.5 bits (103), Expect = 3e-04
 Identities = 45/206 (21%), Positives = 88/206 (42%), Gaps = 39/206 (18%)

Query: 268 NLRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLE-ERRLSELKIKEEEIEK 326
            L  +   L +Q +    + +  E++  +L+ Q++  +++  E    L+EL+ K EE+++
Sbjct: 292 ALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKE 351

Query: 327 KLNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKEL 386
           +L                                ++   +E E + ++   + E   ++L
Sbjct: 352 ELES------------------------------LEAELEELEAELEELESRLEELEEQL 381

Query: 387 ERKE----ELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQ 442
           E       +LE +   +  E E ++ + E+ E  R+  ++  + LLKK +E +    E Q
Sbjct: 382 ETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAE--LKELQ 439

Query: 443 ARLLEQERLMEELRQQGTNEDTEEDL 468
           A L E E  +EEL  Q   E  EE L
Sbjct: 440 AELEELEEELEEL--QEELERLEEAL 463

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|212930 cd11997, SH3_PACSIN3, Src homology 3 domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3)

 Score = 38.8 bits (90), Expect = 3e-04
 Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDE-GWWRG-YCHGQYGLFPANYV 521
           ALYDY     DE+SF   + +  I   DE GW +G    G+ GL+PANYV
Sbjct: 6   ALYDYTGQEADELSFKAGEELLKIGEEDEQGWCKGRLLSGRIGLYPANYV 55

PACSIN 3 or Syndapin III (Synaptic dynamin-associated protein III) is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSINs act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated

 Score = 43.4 bits (103), Expect = 3e-04
 Identities = 43/246 (17%), Positives = 83/246 (33%), Gaps = 52/246 (21%)

Query: 236 SSKVKDLIAANSTNASKENIKPKPNIGHVKPSNLRAKFENLAKQTEEESRKRSEEEKEKR 295
            +K+ + +    +   K N   +               E L K  EEE     + EKE +
Sbjct: 52  LTKLSEALDKLRSYLPKLNPLREEKKKVSV-----KSLEELIKDVEEEL---EKIEKEIK 103

Query: 296 KLKDQIDLEQAQKLEERRLSELKIKEEEIE---------KKLNGHSDV----------PL 336
           +L+++I      +LE   + EL+ + E +E           L G   V           L
Sbjct: 104 ELEEEI-----SELENE-IKELEQEIERLEPWGNFDLDLSLLLGFKYVSVFVGTVPEDKL 157

Query: 337 SPSTETPPVPVKSILKQ-PTSDGIPIQNSNKEEEEKEKQ--------------RMVQEEI 381
                   V     +        + +    +  +E E++                  E I
Sbjct: 158 EELKLESDVENVEYISTDKGYVYVVVVVLKELSDEVEEELKKLGFERLELEEEGTPSELI 217

Query: 382 KRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEE 441
           +  + E  EE+EKE+  + EE + + KK  +E     E  E +    ++ +   +    +
Sbjct: 218 REIK-EELEEIEKERESLLEELKELAKKYLEELLALYEYLEIEL---ERAEALSKFLKTD 273

Query: 442 QARLLE 447
           +   +E
Sbjct: 274 KTFAIE 279

Length = 646

>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown]

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 28/112 (25%), Positives = 59/112 (52%), Gaps = 4/112 (3%)

Query: 352 KQPTSDGIPIQNSNKEEEEKEKQRMVQE-EIKRKELERK-EELEKEQIRIKEEQENIKKK 409
           K+ T +    + +  E+  K+ +  V+  E +  EL+R+ EEL++E  +++ E E  +++
Sbjct: 406 KEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRRE 465

Query: 410 KEQEEKERKEQEENQKLL--LKKQQEEDRLKAEEQARLLEQERLMEELRQQG 459
              + ++ +E     + +  L+K+ EE + + EE  R L + R M +L   G
Sbjct: 466 VRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRKLELSG 517

Length = 652

>gnl|CDD|212816 cd11883, SH3_Sdc25, Src Homology 3 domain of Sdc25/Cdc25 guanine nucleotide exchange factors

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRG--YCHGQY---GLFPANY 520
             VALYD+   + +++SF   DII  +     GWW G           G FP+NY
Sbjct: 1   VVVALYDFTPKSKNQLSFKAGDIIYVLNKDPSGWWDGVIISSSGKVKRGWFPSNY 55

This subfamily is composed of the Saccharomyces cerevisiae guanine nucleotide exchange factors (GEFs) Sdc25 and Cdc25, and similar proteins. These GEFs regulate Ras by stimulating the GDP/GTP exchange on Ras. Cdc25 is involved in the Ras/PKA pathway that plays an important role in the regulation of metabolism, stress responses, and proliferation, depending on available nutrients and conditions. Proteins in this subfamily contain an N-terminal SH3 domain as well as REM (Ras exchanger motif) and RasGEF domains at the C-terminus. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 55

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 47/213 (22%), Positives = 96/213 (45%), Gaps = 15/213 (7%)

Query: 267 SNLRAKFENLAKQTEEESRKRSEEEKEKRKLKDQID--LEQAQKLEERR------LSELK 318
             L  + E L ++ EE   +    E+   KLK++I+   E+ Q L+E        L E +
Sbjct: 747 EELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAE 806

Query: 319 IKEEEIEKKLNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQ 378
            + + +E++L            E         L++   +     +  +EE E+ ++ + +
Sbjct: 807 RRLDALERELESLEQRRERLEQE------IEELEEEIEELEEKLDELEEELEELEKELEE 860

Query: 379 EEIKRKELE-RKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRL 437
            + + +ELE  KEELE E   ++EE+E ++++  + E E  E +E  + L ++ +E +  
Sbjct: 861 LKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAK 920

Query: 438 KAEEQARLLEQERLMEELRQQGTNEDTEEDLGY 470
               +  L E E  +EE  +     + E ++  
Sbjct: 921 LERLEVELPELEEELEEEYEDTLETELEREIER 953

Length = 1163

>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 33/91 (36%), Positives = 58/91 (63%), Gaps = 7/91 (7%)

Query: 362 QNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQE 421
           +   + EEE+ ++R   EE +  E + +EELE+E+ + KEE+E    +KE+EE+ RKEQE
Sbjct: 18  RQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEE----RKEREEQARKEQE 73

Query: 422 ENQKLLLK---KQQEEDRLKAEEQARLLEQE 449
           E +KL      +++  D+L A+E++  L ++
Sbjct: 74  EYEKLKSSFVVEEEGTDKLSADEESNELLED 104

This is a family of proteins of approximately 300 residues, found in plants and vertebrates. They contain a highly conserved DDRGK motif. Length = 189

>gnl|CDD|212827 cd11894, SH3_FCHSD2_2, Second Src Homology 3 domain of FCH and double SH3 domains protein 2

 Score = 38.4 bits (89), Expect = 4e-04
 Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 3/48 (6%)

Query: 474 ALYDYQASADDEISFDPDDIITNIE---MIDEGWWRGYCHGQYGLFPA 518
           ALYDY+   DDE+SF    II  +      D+G+W G  +G+ G+FP+
Sbjct: 4   ALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPS 51

FCHSD2 has a domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. It has only been characterized in silico and its function is unknown. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.1 bits (102), Expect = 4e-04
 Identities = 38/196 (19%), Positives = 76/196 (38%), Gaps = 33/196 (16%)

Query: 269 LRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKKL 328
           L+ + E L +      ++    + E ++L+ +I+  +        L +L+    ++E +L
Sbjct: 735 LKERLEELEEDLSSLEQEIENVKSELKELEARIEELEED------LHKLEEALNDLEARL 788

Query: 329 NGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELER 388
           +                 +  I  +           +K EEE  +      EI++K    
Sbjct: 789 SHS--------------RIPEIQAE----------LSKLEEEVSRIEARLREIEQKLNRL 824

Query: 389 KEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEE---QARL 445
             E E  +  I+E QE     KEQ +   KE E       + ++E + L+A     ++RL
Sbjct: 825 TLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRL 884

Query: 446 LEQERLMEELRQQGTN 461
            + ++  +EL  Q   
Sbjct: 885 GDLKKERDELEAQLRE 900

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|212802 cd11869, SH3_p40phox, Src Homology 3 domain of the p40phox subunit of NADPH oxidase

 Score = 38.2 bits (89), Expect = 4e-04
 Identities = 15/52 (28%), Positives = 30/52 (57%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           A AL+D+  ++  E++F   D+I  +  +++ W  G   G  G+FP ++V +
Sbjct: 2   AEALFDFTGNSKLELNFKAGDVIFLLSRVNKDWLEGTVRGATGIFPLSFVKI 53

p40phox, also called Neutrophil cytosol factor 4 (NCF-4), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. It contains an N-terminal PX domain, a central SH3 domain, and a C-terminal PB1 domain that interacts with p67phox. The SH3 domain of p40phox binds to canonical polyproline and noncanonical motifs at the C-terminus of p47phox. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 22/95 (23%), Positives = 47/95 (49%)

Query: 372 EKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQ 431
            K + VQ + +R + + KE+LE++  +  E    I+++K++++   +E  +  +  L++Q
Sbjct: 373 GKHQDVQRKYERLKQKIKEQLERDLEKNNERLAAIREEKDRQKAAIEEDLQALESQLRQQ 432

Query: 432 QEEDRLKAEEQARLLEQERLMEELRQQGTNEDTEE 466
            E  +L+  E+   LE      + R        EE
Sbjct: 433 LEAGKLEFNEEEYELELRLGRLKQRLDSATATPEE 467

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|212906 cd11973, SH3_ASEF, Src homology 3 domain of APC-Stimulated guanine nucleotide Exchange Factor

 Score = 38.8 bits (90), Expect = 4e-04
 Identities = 21/68 (30%), Positives = 33/68 (48%)

Query: 457 QQGTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLF 516
           Q   NE   +     A AL+D+    D E+ F   D+I  ++  ++ WW G      G F
Sbjct: 5   QLAINELISDGSVVCAEALWDHVTMDDQELGFKAGDVIEVMDATNKEWWWGRVLDSEGWF 64

Query: 517 PANYVSLQ 524
           PA++V L+
Sbjct: 65  PASFVRLR 72

ASEF, also called ARHGEF4, exists in an autoinhibited form and is activated upon binding of the tumor suppressor APC (adenomatous polyposis coli). GEFs activate small GTPases by exchanging bound GDP for free GTP. ASEF can activate Rac1 or Cdc42. Truncated ASEF, which is found in colorectal cancers, is constitutively active and has been shown to promote angiogenesis and cancer cell migration. ASEF contains a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. In its autoinhibited form, the SH3 domain of ASEF forms an extensive interface with the DH and PH domains, blocking the Rac binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 73

>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 22/78 (28%), Positives = 46/78 (58%), Gaps = 3/78 (3%)

Query: 363 NSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKK--KKEQEEKERKEQ 420
              K  + ++ +  +++EIK+ E E KEELEK    ++ + E I+K  ++E++ +E++  
Sbjct: 111 GMRKALQAEQGKSELEQEIKKLE-EEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHA 169

Query: 421 EENQKLLLKKQQEEDRLK 438
           +E   L  + QQ + +L+
Sbjct: 170 DEIAFLKKQNQQLKSQLE 187

Axonemal dynein light chain proteins play a dynamic role in flagellar and cilia motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains. Length = 189

>gnl|CDD|212857 cd11924, SH3_Vinexin_2, Second Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)

 Score = 38.0 bits (88), Expect = 4e-04
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHG--QYGLFPANYVSL 523
           AVA Y ++   + E+SF   + I  I  ++E W+ G   G  + G+FPA+YV +
Sbjct: 3   AVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQV 56

Vinexin is also called Sorbs3, SH3P3, and SH3-containing adapter molecule 1 (SCAM-1). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. Vinexin was first identified as a vinculin binding protein; it is co-localized with vinculin at cell-ECM and cell-cell adhesion sites. There are several splice variants of vinexin: alpha, which contains the SoHo and three SH3 domains and displays tissue-specific expression; and beta, which contains only the three SH3 domains and is widely expressed. Vinexin alpha stimulates the accumulation of F-actin at focal contact sites. Vinexin also promotes keratinocyte migration and wound healing. The SH3 domains of vinexin have been reported to bind a number of ligands including vinculin, WAVE2, DLG5, Abl, and Cbl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 42.8 bits (100), Expect = 5e-04
 Identities = 39/194 (20%), Positives = 84/194 (43%), Gaps = 8/194 (4%)

Query: 282  EESRKRSEE---EKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKKLNGHSDVPLSP 338
            EE+RK  +    E  K+  + + D E+A+K EE R +E   K EE            +  
Sbjct: 1215 EEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKA 1274

Query: 339  STETPPVPVKSILKQPTSDGIPIQNSNKEEEE---KEKQRMVQEEIKRK--ELERKEELE 393
                    +K   ++  +D        K+ +E   K ++    +E K+K  E ++K +  
Sbjct: 1275 EEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAA 1334

Query: 394  KEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQERLME 453
            K++    ++     K + +   +  E  E +    +K++EE + KA+   +  E+++  +
Sbjct: 1335 KKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKAD 1394

Query: 454  ELRQQGTNEDTEED 467
            E +++   +  + D
Sbjct: 1395 EAKKKAEEDKKKAD 1408

Length = 2084

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 43/193 (22%), Positives = 90/193 (46%), Gaps = 16/193 (8%)

Query: 271 AKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLE-ERRLSELKIKEEEIEKKLN 329
            + E L ++ EE+  +  E E+E  +L+++++  +A   E E  L +LK  EE +EK   
Sbjct: 277 RELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEE 336

Query: 330 GHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERK 389
               +                L +  ++   +     +E E+  + +  E+   K LER 
Sbjct: 337 KLEKLE----------SELEELAEEKNELAKLLEERLKELEERLEEL--EKELEKALERL 384

Query: 390 EELEKEQIRIKEEQENIKK---KKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLL 446
           ++LE+    +KEE   +     + ++E +E +++ E  +  L++ +EE +   E+  +L 
Sbjct: 385 KQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLE 444

Query: 447 EQERLMEELRQQG 459
            +E ++ EL   G
Sbjct: 445 SKELMIAELAGAG 457

Length = 908

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 42.6 bits (100), Expect = 5e-04
 Identities = 43/203 (21%), Positives = 86/203 (42%), Gaps = 9/203 (4%)

Query: 268 NLRAKFENLA-KQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEK 326
            L  + ENLA    + E  K  E + +++  K     +  +KLE    + L +   ++ +
Sbjct: 178 KLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNE 237

Query: 327 KLNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQN-SNKEEEEKEKQRMVQEEIKRKE 385
           +        L    E          KQ       I     KE +E+EK++ +QEE + K 
Sbjct: 238 ERIDLLQELLRDEQEE-----IESSKQELEKEEEILAQVLKENKEEEKEKKLQEE-ELKL 291

Query: 386 LERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDR-LKAEEQAR 444
           L ++EE  K ++   E ++   ++K +E ++  ++ E +    K++ EE      E + +
Sbjct: 292 LAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIK 351

Query: 445 LLEQERLMEELRQQGTNEDTEED 467
              +E   E+L +     +  E+
Sbjct: 352 REAEEEEEEQLEKLQEKLEQLEE 374

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|212854 cd11921, SH3_Vinexin_1, First Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)

 Score = 38.0 bits (88), Expect = 5e-04
 Identities = 18/48 (37%), Positives = 30/48 (62%)

Query: 476 YDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           +D+QA +  E++    DI+   + +D+ W  G  HG+ G+FPANYV +
Sbjct: 7   FDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRVGIFPANYVEV 54

Vinexin is also called Sorbs3, SH3P3, and SH3-containing adapter molecule 1 (SCAM-1). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. Vinexin was first identified as a vinculin binding protein; it is co-localized with vinculin at cell-ECM and cell-cell adhesion sites. There are several splice variants of vinexin: alpha, which contains the SoHo and three SH3 domains and displays tissue-specific expression; and beta, which contains only the three SH3 domains and is widely expressed. Vinexin alpha stimulates the accumulation of F-actin at focal contact sites. Vinexin also promotes keratinocyte migration and wound healing. The SH3 domains of vinexin have been reported to bind a number of ligands including vinculin, WAVE2, DLG5, Abl, and Cbl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212718 cd11784, SH3_SH3RF2_3, Third Src Homology 3 domain of SH3 domain containing ring finger 2

 Score = 37.8 bits (88), Expect = 5e-04
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC--HGQYGLFPANYVS 522
           VAL+ Y A   +E+     + +  +    EGW RG     G+ G+FP+NYVS
Sbjct: 3   VALHSYSAHRPEELELQKGEGVRVLGKFQEGWLRGLSLVTGRVGIFPSNYVS 54

SH3RF2 is also called POSHER (POSH-eliminating RING protein) or HEPP1 (heart protein phosphatase 1-binding protein). It acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1 (or POSH), a scaffold protein that is required for pro-apoptotic JNK activation. It may also play a role in cardiac functions together with protein phosphatase 1. SH3RF2 contains an N-terminal RING finger domain and three SH3 domains. This model represents the third SH3 domain, located in the middle, of SH3RF2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 42.3 bits (99), Expect = 6e-04
 Identities = 52/213 (24%), Positives = 94/213 (44%), Gaps = 9/213 (4%)

Query: 263 HVKPSNLRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEE 322
            +    LR + E +    +E  +   EEE   + LK+  + E+ +KL+E  L  L  +EE
Sbjct: 241 DLLQELLRDEQEEIESSKQELEK---EEEILAQVLKENKEEEKEKKLQEEELKLLAKEEE 297

Query: 323 EIEKKLNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIK 382
           E++ +L       L          +K   K+       ++   +E EE EK+    E  +
Sbjct: 298 ELKSELL-----KLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKR 352

Query: 383 RKELERKEELEKEQIR-IKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEE 441
             E E +E+LEK Q +  + E+E + KKK + E+     +  ++ L  K +EE   K   
Sbjct: 353 EAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLL 412

Query: 442 QARLLEQERLMEELRQQGTNEDTEEDLGYTAVA 474
           +    E++ L EE +++    +  E+   T   
Sbjct: 413 ELSEQEEDLLKEEKKEELKIVEELEESLETKQG 445

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 42.3 bits (99), Expect = 6e-04
 Identities = 39/195 (20%), Positives = 84/195 (43%), Gaps = 7/195 (3%)

Query: 268 NLRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKK 327
           NL         +   +  +    ++++     + +LE+ +++  + L E K +E+E + +
Sbjct: 226 NLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQ 285

Query: 328 LNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELE 387
                ++ L    E         L++   D         +E EKE +++ +E  K KE  
Sbjct: 286 ---EEELKLLAKEEEELKSELLKLERRKVDD----EEKLKESEKELKKLEKELKKEKEEI 338

Query: 388 RKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLE 447
            + E E +++ IK E E  ++++ ++ +E+ EQ E + L  KK + E    A +      
Sbjct: 339 EELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEEL 398

Query: 448 QERLMEELRQQGTNE 462
           + +  EE   +   E
Sbjct: 399 ELKNEEEKEAKLLLE 413

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.4 bits (100), Expect = 6e-04
 Identities = 41/196 (20%), Positives = 86/196 (43%), Gaps = 12/196 (6%)

Query: 267 SNLRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEK 326
           + L A+ E L ++  + S++ +E E E  +L+++  LE+A++      +E++  E +IE+
Sbjct: 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEER--LEEAEEELAEAEAEIEELEAQIEQ 793

Query: 327 KLNGHSDVPLSPSTETPPVPVKSILKQP----TSDGIPIQNSNKEEEEKEKQRMVQEEIK 382
                       +       +++ L        +    +++  +     E++    EE  
Sbjct: 794 LKEELK------ALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQI 847

Query: 383 RKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQ 442
            +  E  E L  E   ++E  E ++ + E    ER   EE   LL  + +E      E +
Sbjct: 848 EELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELE 907

Query: 443 ARLLEQERLMEELRQQ 458
           ++  E  R +EELR++
Sbjct: 908 SKRSELRRELEELREK 923

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 41.9 bits (99), Expect = 6e-04
 Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 12/73 (16%)

Query: 379 EEIKRK-ELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRL 437
            E+ RK +  R+EE EK    I +  E  ++++ QE+KE K++EE       ++ +  +L
Sbjct: 255 PEVLRKVDKTREEEEEK----ILKAAEEERQEEAQEKKEEKKKEE-------REAKLAKL 303

Query: 438 KAEEQARLLEQER 450
             EEQ +L E+ER
Sbjct: 304 SPEEQRKLEEKER 316

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|212702 cd11768, SH3_Tec_like, Src Homology 3 domain of Tec-like Protein Tyrosine Kinases

 Score = 37.6 bits (88), Expect = 6e-04
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYV 521
           VALYD+Q     ++  +  +    ++  +E WWR    +G  G  P+NYV
Sbjct: 3   VALYDFQPIEPGDLPLEKGEEYVVLDDSNEHWWRARDKNGNEGYIPSNYV 52

The Tec (Tyrosine kinase expressed in hepatocellular carcinoma) subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. They are cytoplasmic (or nonreceptor) tyr kinases containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212997 cd12064, SH3_GRAF, Src Homology 3 domain of GTPase Regulator Associated with Focal adhesion kinase

 Score = 37.8 bits (87), Expect = 6e-04
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDE-GWWRGYCHGQYGLFPANYVSL 523
           A ALY  +A  D E+SF    +  N+    E GW  G  +G+ GL P NYV  
Sbjct: 3   AKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEF 55

GRAF, also called Rho GTPase activating protein 26 (ARHGAP26), Oligophrenin-1-like (OPHN1L) or GRAF1, is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. It is essential for the major clathrin-independent endocytic pathway mediated by pleiomorphic membranes. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. The SH3 domain of GRAF binds PKNbeta, a target of the small GTPase Rho. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 56

>gnl|CDD|212785 cd11851, SH3_RIM-BP, Src homology 3 domains of Rab3-interacting molecules (RIMs) binding proteins

 Score = 37.7 bits (88), Expect = 7e-04
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 9/59 (15%)

Query: 473 VALYDYQAS-------ADDEISFDPDDIITNIEMIDE-GWWRGY-CHGQYGLFPANYVS 522
           VALYDY           ++E+SF   D++     +DE G++ G    G+ GL P+N+V 
Sbjct: 3   VALYDYNPETMSPNDDPEEELSFHAGDVVRVYGPMDEDGFYYGELEGGRKGLVPSNFVQ 61

RIMs binding proteins (RBPs, RIM-BPs) associate with calcium channels present in photoreceptors, neurons, and hair cells; they interact simultaneously with specific calcium channel subunits, and active zone proteins, RIM1 and RIM2. RIMs are part of the matrix at the presynaptic active zone and are associated with synaptic vesicles through their interaction with the small GTPase Rab3. RIM-BPs play a role in regulating synaptic transmission by serving as adaptors and linking calcium channels with the synaptic vesicle release machinery. RIM-BPs contain three SH3 domains and two to three fibronectin III repeats. Invertebrates contain one, while vertebrates contain at least two RIM-BPs, RIM-BP1 and RIM-BP2. RIM-BP1 is also called peripheral-type benzodiazapine receptor associated protein 1 (PRAX-1). Mammals contain a third protein, RIM-BP3. RIM-BP1 and RIM-BP2 are predominantly expressed in the brain where they display overlapping but distinct expression patterns, while RIM-BP3 is almost exclusively expressed in the testis and is essential in spermiogenesis. The SH3 domains of RIM-BPs bind to the PxxP motifs of RIM1, RIM2, and L-type (alpha1D) and N-type (alpha1B) calcium channel subunits. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212908 cd11975, SH3_ARHGEF9, Src homology 3 domain of the Rho guanine nucleotide exchange factor ARHGEF9

 Score = 37.8 bits (87), Expect = 7e-04
 Identities = 17/53 (32%), Positives = 32/53 (60%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           +A A++D+   A+ E++F   D+I  ++  ++ WW G    + G FPA++V L
Sbjct: 6   SAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRL 58

ARHGEF9, also called PEM2 or collybistin, selectively activates Cdc42 by exchanging bound GDP for free GTP. It is highly expressed in the brain and it interacts with gephyrin, a postsynaptic protein associated with GABA and glycine receptors. Mutations in the ARHGEF9 gene cause X-linked mental retardation with associated features like seizures, hyper-anxiety, aggressive behavior, and sensory hyperarousal. ARHGEF9 contains a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 41.5 bits (97), Expect = 7e-04
 Identities = 29/84 (34%), Positives = 51/84 (60%), Gaps = 6/84 (7%)

Query: 366 KEEEEKEKQRMVQEEIKRK---ELERKEELEKEQIRIKEEQ---ENIKKKKEQEEKERKE 419
            E++ K+K+  V EE+K K   E ER ++LEKE+++ +E+Q   E  +K+ + E+K+++E
Sbjct: 77  GEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEE 136

Query: 420 QEENQKLLLKKQQEEDRLKAEEQA 443
           Q        KK+ E  + KA  +A
Sbjct: 137 QARKAAAEQKKKAEAAKAKAAAEA 160

Length = 387

>gnl|CDD|212863 cd11930, SH3_SH3RF1_2, Second Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase

 Score = 37.3 bits (86), Expect = 7e-04
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 4/52 (7%)

Query: 474 ALYDYQ---ASAD-DEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           ALYD++     AD D + F  DDI+T I  +DE W  G    + G+FP +YV
Sbjct: 4   ALYDFEVKDKEADKDCLPFAKDDILTVIRRVDENWAEGMLGDKIGIFPISYV 55

SH3RF1 is also called POSH (Plenty of SH3s) or SH3MD2 (SH3 multiple domains protein 2). It is a scaffold protein that acts as an E3 ubiquitin-protein ligase. It plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF1 also enhances the ubiquitination of ROMK1 potassium channel resulting in its increased endocytosis. It contains an N-terminal RING finger domain and four SH3 domains. This model represents the second SH3 domain, located C-terminal of the first SH3 domain at the N-terminal half, of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 42.1 bits (99), Expect = 8e-04
 Identities = 44/198 (22%), Positives = 89/198 (44%), Gaps = 11/198 (5%)

Query: 269 LRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKKL 328
           LR + E L K+  E   +  E  + +  LK++++ E+ +KLE       ++KE+   ++L
Sbjct: 499 LREEIEELEKELRELEEELIELLELEEALKEELE-EKLEKLENLLEELEELKEKLQLQQL 557

Query: 329 NGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELER 388
                       E     +K +L++       +  + KEE E+ ++R+ + + K KELE 
Sbjct: 558 KEELRQLEDRLQE-----LKELLEELR-----LLRTRKEELEELRERLKELKKKLKELEE 607

Query: 389 KEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQ 448
           +    +E ++  E  E   + +E EE+   E E+       ++  +  L+  E+     +
Sbjct: 608 RLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELE 667

Query: 449 ERLMEELRQQGTNEDTEE 466
             +  EL++    E  EE
Sbjct: 668 AEIRRELQRIENEEQLEE 685

Length = 908

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 41.4 bits (98), Expect = 8e-04
 Identities = 27/96 (28%), Positives = 58/96 (60%), Gaps = 5/96 (5%)

Query: 368 EEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEE-----QENIKKKKEQEEKERKEQEE 422
            +E+E+   + E I+ ++    +E  ++Q +++EE     +E I++K+E++E+ER+E+ +
Sbjct: 95  LQEREQMDEIIERIQEEDEAEAQEKREKQKKLREEIDEFNEERIERKEEEKEREREEELK 154

Query: 423 NQKLLLKKQQEEDRLKAEEQARLLEQERLMEELRQQ 458
             +   +K + E+  +AE + R  E+ER +  LR Q
Sbjct: 155 ILEYQREKAEREEEREAERRERKEEKEREVARLRAQ 190

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]

 Score = 41.6 bits (98), Expect = 8e-04
 Identities = 40/215 (18%), Positives = 71/215 (33%), Gaps = 26/215 (12%)

Query: 283 ESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELK-----IKEEEIEKKLNGHSDVPLS 337
           E+  +S EE  K   K   ++E+  +  E RLSEL      +++   E +   + D  LS
Sbjct: 91  EAELKSLEEVIKPAEKFSSEVEELTRKLEERLSELDEELEDLEDLLEELEPLAYLDFDLS 150

Query: 338 --PSTETPPVPVKSILKQPTSDGIPIQNSNKEEE---EKEKQRMV-----QEEIKRKELE 387
                +   V +   L +       +     E     E  +  +V       E   K  +
Sbjct: 151 LLRGLKFLLVRL--GLVRREKLEALVGVIEDEVALYGENVEASVVIVVAHGAEDLDKVSK 208

Query: 388 RKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLE 447
              EL  E   + E      +   + E+   E ++  + L  + +    L  +    LL 
Sbjct: 209 ILNELGFELYEVPEFDGGPSELISELEEVIAEIQDELESLRSELEA---LAEKIAEELLA 265

Query: 448 QERLMEELRQQGTNEDTEEDLGYTAVALYDYQASA 482
              ++E  +  G   D    L  T    Y      
Sbjct: 266 VREILEIEKALG---DVLSKLARTE---YTLAIEG 294

Length = 660

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 42.1 bits (98), Expect = 9e-04
 Identities = 47/210 (22%), Positives = 95/210 (45%), Gaps = 27/210 (12%)

Query: 265  KPSNLRAKFENLAKQTEE-----ESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKI 319
            K +    K E   K+ EE     E++K++EE K+  + K + +  + +  E ++ +E K 
Sbjct: 1451 KKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKK 1510

Query: 320  KEEEIEKKLNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQE 379
            K +E +K            + E                    +    EE++K  +    E
Sbjct: 1511 KADEAKKAEEAKKADEAKKAEEAKKAD---------------EAKKAEEKKKADELKKAE 1555

Query: 380  EIKRKELERK-------EELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQ 432
            E+K+ E ++K       EE +   +R  EE +  ++ + +E  +  E+E+  K    K+ 
Sbjct: 1556 ELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKA 1615

Query: 433  EEDRLKAEEQARLLEQERLMEELRQQGTNE 462
            EE ++KAEE  +  E+++ +E+L+++   E
Sbjct: 1616 EEAKIKAEELKKAEEEKKKVEQLKKKEAEE 1645

Length = 2084

>gnl|CDD|212828 cd11895, SH3_FCHSD1_2, Second Src Homology 3 domain of FCH and double SH3 domains protein 1

 Score = 37.3 bits (86), Expect = 9e-04
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 4/51 (7%)

Query: 472 AVALYDYQASADDEISFDPDDIITNI----EMIDEGWWRGYCHGQYGLFPA 518
           A ALY Y   + +E+SF    +I  +    + +D+G+WRG   G+ G+FP+
Sbjct: 2   ARALYSYTGQSPEELSFPEGALIRLLPRAQDGVDDGFWRGEFGGRVGVFPS 52

FCHSD1 has a domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. It has only been characterized in silico and its function is unknown. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 51/197 (25%), Positives = 99/197 (50%), Gaps = 10/197 (5%)

Query: 267 SNLRAKFENLAKQTEEESRK-RSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIE 325
             LR + E L +Q EE  R+  + EE+ ++      +LE+  +  E  L EL+ + EE+E
Sbjct: 705 EELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELE 764

Query: 326 KKLNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKE 385
           ++L    +       E      + + ++  +    ++   +E EE E++    E      
Sbjct: 765 EELESLEEALAKLKEEI-----EELEEKRQALQEELEELEEELEEAERRLDALERELESL 819

Query: 386 LERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQ----EENQKLLLKKQQEEDRLKAEE 441
            +R+E LE+E   ++EE E +++K ++ E+E +E     EE ++ L + + E++ L+ E 
Sbjct: 820 EQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDEL 879

Query: 442 QARLLEQERLMEELRQQ 458
           +    E+E L EELR+ 
Sbjct: 880 KELEEEKEELEEELREL 896

Length = 1163

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 41.5 bits (97), Expect = 0.001
 Identities = 40/195 (20%), Positives = 90/195 (46%), Gaps = 3/195 (1%)

Query: 265 KPSNLRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEI 324
                R + E  A  + E+ +K+   +K   + ++  +L     LEE +L ELK+KE+  
Sbjct: 151 MKPERRLEIEEEAAGSREKRKKKERLKKLIEETENLAELII--DLEELKLQELKLKEQAK 208

Query: 325 EKKLNGHSDVPLSPSTETPPVPVKSILKQPTSDG-IPIQNSNKEEEEKEKQRMVQEEIKR 383
           +          L    E         L +   D    +    +EE E  KQ + +EE   
Sbjct: 209 KALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEIL 268

Query: 384 KELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQA 443
            ++ ++ + E+++ +++EE+  +  K+E+E K    + E +K+  +++ +E   + ++  
Sbjct: 269 AQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLE 328

Query: 444 RLLEQERLMEELRQQ 458
           + L++E+   E  ++
Sbjct: 329 KELKKEKEEIEELEK 343

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 40/190 (21%), Positives = 76/190 (40%), Gaps = 46/190 (24%)

Query: 269 LRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKKL 328
           LR + E L ++ +E   +  E   E ++L  +  LE+        +SEL+ + EE++K+L
Sbjct: 237 LREELEELQEELKEAEEELEELTAELQEL--EEKLEEL----RLEVSELEEEIEELQKEL 290

Query: 329 NGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELER 388
                                                 E    E+Q+ +  E       R
Sbjct: 291 ---------------------------------YALANEISRLEQQKQILRE-------R 310

Query: 389 KEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQ 448
              LE++   ++ + E ++ K ++  +E  E EE  + L ++ +  +    E +A L E 
Sbjct: 311 LANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEEL 370

Query: 449 ERLMEELRQQ 458
           E  +EEL +Q
Sbjct: 371 ESRLEELEEQ 380

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|212742 cd11808, SH3_Alpha_Spectrin, Src homology 3 domain of Alpha Spectrin

 Score = 37.1 bits (86), Expect = 0.001
 Identities = 19/49 (38%), Positives = 28/49 (57%)

Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           VALYDYQ  +  E+S    DI+T +   ++ WW+   + + G  PA YV
Sbjct: 3   VALYDYQEKSPREVSMKKGDILTLLNSSNKDWWKVEVNDRQGFVPAAYV 51

Spectrin is a major structural component of the red blood cell membrane skeleton and is important in erythropoiesis and membrane biogenesis. It is a flexible, rope-like molecule composed of two subunits, alpha and beta, which consist of many spectrin-type repeats. Alpha and beta spectrin associate to form heterodimers and tetramers; spectrin tetramer formation is critical for red cell shape and deformability. Defects in alpha spectrin have been associated with inherited hemolytic anemias including hereditary spherocytosis (HSp), hereditary elliptocytosis (HE), and hereditary pyropoikilocytosis (HPP). Alpha spectrin contains a middle SH3 domain and a C-terminal EF-hand binding motif in addition to multiple spectrin repeats. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212898 cd11965, SH3_ASAP1, Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing protein 1

 Score = 37.3 bits (86), Expect = 0.001
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 3/52 (5%)

Query: 475 LYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQ---YGLFPANYVSL 523
           +YD QA  DDE++F   ++I      D+ WW G+  GQ    G+FP ++V +
Sbjct: 5   IYDCQADNDDELTFVEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHI 56

ASAP1 is also called DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6. However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212692 cd11758, SH3_CRK_N, N-terminal Src Homology 3 domain of Ct10 Regulator of Kinase adaptor proteins

 Score = 37.0 bits (86), Expect = 0.001
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYVS 522
               AL+D+  + D+++ F   +I+T I   +E WW      G+ G+ P  YV 
Sbjct: 1   EYVRALFDFPGNDDEDLPFKKGEILTVIRKPEEQWWNARNSEGKTGMIPVPYVE 54

CRK adaptor proteins consists of SH2 and SH3 domains, which bind tyrosine-phosphorylated peptides and proline-rich motifs, respectively. They function downstream of protein tyrosine kinases in many signaling pathways started by various extracellular signals, including growth and differentiation factors. Cellular CRK (c-CRK) contains a single SH2 domain, followed by N-terminal and C-terminal SH3 domains. It is involved in the regulation of many cellular processes including cell growth, motility, adhesion, and apoptosis. CRK has been implicated in the malignancy of various human cancers. The N-terminal SH3 domain of CRK binds a number of target proteins including DOCK180, C3G, SOS, and cABL. The CRK family includes two alternatively spliced protein forms, CRKI and CRKII, that are expressed by the CRK gene, and the CRK-like (CRKL) protein, which is expressed by a distinct gene (CRKL). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212939 cd12006, SH3_Fyn_Yrk, Src homology 3 domain of Fyn and Yrk Protein Tyrosine Kinases

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWW--RGYCHGQYGLFPANYVS 522
           VALYDY+A  +D++SF   +    +   +  WW  R    G+ G  P+NYV+
Sbjct: 4   VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVA 55

Fyn and Yrk (Yes-related kinase) are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212850 cd11917, SH3_Sorbs2_3, Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 36.9 bits (85), Expect = 0.001
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQ--YGLFPANYV 521
           ALY+Y    +DE+     D+I  +E  D+GW+ G       +G FP NYV
Sbjct: 9   ALYNYMPRNEDELELREGDVIDVMEKCDDGWFVGTSRRTKFFGTFPGNYV 58

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212695 cd11761, SH3_FCHSD_1, First Src Homology 3 domain of FCH and double SH3 domains proteins

 Score = 37.0 bits (86), Expect = 0.001
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMID-EGWWRGY-CHGQYGLFPANYV 521
           T   LY Y+A   DE++    + +  IE  D +GW +     G+ G  P NY+
Sbjct: 3   TCKVLYSYEAQRPDELTITEGEELEVIEDGDGDGWVKARNKSGEVGYVPENYL 55

This group is composed of FCH and double SH3 domains protein 1 (FCHSD1) and FCHSD2. These proteins have a common domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. They have only been characterized in silico and their functions remain unknown. This group also includes the insect protein, nervous wreck, which acts as a regulator of synaptic growth signaling. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 23/119 (19%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 335 PLSPSTETPPVPVKSILKQPTSDGIPI-QNSNKEEEEKEKQRMVQEEIKRKELERKEELE 393
            L  S +  P     I++    D   + Q +N+ +++K+     ++E ++K  ++ EE E
Sbjct: 22  SLYHSVKPEPGGGGEIIQAVLVDPGAVAQQANRIQQQKKPAAKKEQERQKKLEQQAEEAE 81

Query: 394 KEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRL--KAEEQARLLEQER 450
           K++   +  Q+ ++++   E+  ++ ++  ++   K++Q E+    +A E     E E 
Sbjct: 82  KQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEA 140

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|212888 cd11955, SH3_srGAP1-3, Src homology 3 domain of Slit-Robo GTPase Activating Proteins 1, 2, and 3

 Score = 36.5 bits (84), Expect = 0.001
 Identities = 15/50 (30%), Positives = 23/50 (46%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           A+A +DY   +  E+SF     +       + WW G  +G  GL P  Y+
Sbjct: 2   AIAKFDYVGRSARELSFKKGASLLLYHRASDDWWEGRHNGIDGLVPHQYI 51

srGAP1, also called Rho GTPase-Activating Protein 13 (ARHGAP13), is a Cdc42- and RhoA-specific GAP and is expressed later in the development of central nervous system tissues. srGAP2 is expressed in zones of neuronal differentiation. It plays a role in the regeneration of neurons and axons. srGAP3, also called MEGAP (MEntal disorder associated GTPase-Activating Protein), is a Rho GAP with activity towards Rac1 and Cdc42. It impacts cell migration by regulating actin and microtubule cytoskeletal dynamics. The association between srGAP3 haploinsufficiency and mental retardation is under debate. srGAPs are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 1/94 (1%)

Query: 373 KQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQ 432
           K+R  QE+ KR + + KEEL+K+QI   + Q+     ++  +K+R E  + Q+      +
Sbjct: 204 KERESQEDAKRAQ-QLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPK 262

Query: 433 EEDRLKAEEQARLLEQERLMEELRQQGTNEDTEE 466
             D    +E  ++ E ++   E  Q    ++ EE
Sbjct: 263 PADTSSPKEDKQVAENQKREIEKAQIEIKKNDEE 296

This family consists of several Borrelia P83/P100 antigen proteins. Length = 489

>gnl|CDD|212851 cd11918, SH3_Vinexin_3, Third (or C-terminal) Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)

 Score = 36.9 bits (85), Expect = 0.001
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYVS 522
           A+Y Y+   +DE+     D +  ++  D+GW+ G      ++G FP NYV+
Sbjct: 6   AVYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVA 56

Vinexin is also called Sorbs3, SH3P3, and SH3-containing adapter molecule 1 (SCAM-1). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. Vinexin was first identified as a vinculin binding protein; it is co-localized with vinculin at cell-ECM and cell-cell adhesion sites. There are several splice variants of vinexin: alpha, which contains the SoHo and three SH3 domains and displays tissue-specific expression; and beta, which contains only the three SH3 domains and is widely expressed. Vinexin alpha stimulates the accumulation of F-actin at focal contact sites. Vinexin also promotes keratinocyte migration and wound healing. The SH3 domains of vinexin have been reported to bind a number of ligands including vinculin, WAVE2, DLG5, Abl, and Cbl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 40.9 bits (95), Expect = 0.002
 Identities = 57/294 (19%), Positives = 127/294 (43%), Gaps = 22/294 (7%)

Query: 180  QEKIEKHESQKDYAKGFGGKFGIESDRQDKSAVGWDHVEKVDKHQSQKDDNRQVVTSSKV 239
            +   ++ E+ ++ A+    K      + D +    +  +K D+ + + +++++     K 
Sbjct: 1353 EAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKK 1412

Query: 240  KDLIAANSTNASKENIKPKPNIGHVKPSNLRAKFENLAKQTEEESRKRSEEEKEKRKLKD 299
                   +  A K+  + K      K +    K +   K+ EE   K++EE K+K +   
Sbjct: 1413 AAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEE--AKKAEEAKKKAEEAK 1470

Query: 300  QIDLEQAQKLEERRLSELKIKEEEIEKKLNGHSDVPLSPSTETPPVPVKSILKQPTSDGI 359
            + D  + +  E ++  E K K EE +KK +                   +  K+   +  
Sbjct: 1471 KADEAKKKAEEAKKADEAKKKAEEAKKKAD--------------EAKKAAEAKKKADEAK 1516

Query: 360  PIQNSNKEEEEK--EKQRMVQEEIKRKELERKEELEK-EQIRIKEEQENIKKKKEQEEKE 416
              + + K +E K  E+ +   E  K +E ++ +EL+K E+++  EE++  ++ K+ EE +
Sbjct: 1517 KAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDK 1576

Query: 417  R---KEQEENQKLLLKKQQEEDRLKAEEQARLLEQERLMEELRQQGTNEDTEED 467
                ++ EE +K    + +E  +L  EE+    E+ +  EE + +       E+
Sbjct: 1577 NMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEE 1630

Length = 2084

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 37/153 (24%), Positives = 78/153 (50%), Gaps = 7/153 (4%)

Query: 268  NLRAKFENLAKQTEEESRKRSEEEKEKRKLKDQI-DLEQAQKLEERRLSELKIKEEEIEK 326
             L A   +L  +  +  ++R E E + R+L+ +I +LE   + + +RLSELK K E +E+
Sbjct: 872  ELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEE 931

Query: 327  KLNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKEL 386
            +L+   D                 ++        +Q   +E    E   M+  +   + L
Sbjct: 932  ELSEIEDPKGEDEEIPEEELSLEDVQAE------LQRVEEEIRALEPVNMLAIQEYEEVL 985

Query: 387  ERKEELEKEQIRIKEEQENIKKKKEQEEKERKE 419
            +R +EL++++ +++EE++ I ++ E+ EK+++E
Sbjct: 986  KRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 20/59 (33%), Positives = 39/59 (66%)

Query: 363 NSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQE 421
           +  +EEEE++  +  +EE + +  E+KEE +KE+   K  + + +++++ EEKERK+Q 
Sbjct: 262 DKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQA 320

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 25/93 (26%), Positives = 56/93 (60%)

Query: 366 KEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQK 425
           + EEE+E +R  ++E K +E+ R    ++E    +EE + ++    QEE ERKE+++ ++
Sbjct: 164 EREEEREAERRERKEEKEREVARLRAQQEEAEDEREELDELRADLYQEEYERKERQKEKE 223

Query: 426 LLLKKQQEEDRLKAEEQARLLEQERLMEELRQQ 458
              K+++++  L+   + ++ E+E  ++E R +
Sbjct: 224 EAEKRRRQKQELQRAREEQIEEKEERLQEERAE 256

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|212949 cd12016, SH3_Tks_2, Second Src homology 3 domain of Tyrosine kinase substrate (Tks) proteins

 Score = 36.3 bits (84), Expect = 0.002
 Identities = 15/49 (30%), Positives = 26/49 (53%)

Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           +    Y+A  +DEI F+   ++  I+   +GWW+    G+ G  PA Y+
Sbjct: 4   ITTQAYKAENEDEIGFETGVVVEVIQKNLDGWWKIRYQGKEGWAPATYL 52

Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Vertebrates contain two Tks proteins, Tks4 (Tyr kinase substrate with four SH3 domains) and Tks5 (Tyr kinase substrate with five SH3 domains), which display partially overlapping but non-redundant functions. Both associate with the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. Tks5 interacts with N-WASP and Nck, while Tks4 is essential for the localization of MT1-MMP (membrane-type 1 matrix metalloproteinase) to invadopodia. Tks proteins contain an N-terminal Phox homology (PX) domain and four or five SH3 domains. This model characterizes the second SH3 domain of Tks proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212859 cd11926, SH3_SH3RF1_3, Third Src Homology 3 domain of SH3 domain containing ring finger 1, an E3 ubiquitin-protein ligase

 Score = 36.5 bits (84), Expect = 0.002
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYVS 522
           VA+Y Y    +DE+     ++    E   +GW++G      + G+FP NYV+
Sbjct: 3   VAIYPYTPRKEDELELRKGEMFLVFERCQDGWFKGTSMHTSKIGVFPGNYVA 54

SH3RF1 is also called POSH (Plenty of SH3s) or SH3MD2 (SH3 multiple domains protein 2). It is a scaffold protein that acts as an E3 ubiquitin-protein ligase. It plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF1 also enhances the ubiquitination of ROMK1 potassium channel resulting in its increased endocytosis. It contains an N-terminal RING finger domain and four SH3 domains. This model represents the third SH3 domain, located in the middle, of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|213017 cd12141, SH3_DNMBP_C2, Second C-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba, and similar domains

 Score = 36.3 bits (84), Expect = 0.002
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEG----WWRGYCHGQYGLFPANYV 521
           A+Y ++A + +E+S   +  +  +E  D      WW    +GQ G  P+NY+
Sbjct: 4   AVYTFKARSPNELSVSANQRVRILEFSDLTGNKEWWLAEANGQKGYVPSNYI 55

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. The C-terminal SH3 domains of DNMBP bind to N-WASP and Ena/VASP proteins, which are key regulatory proteins of the actin cytoskeleton. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212925 cd11992, SH3_Intersectin2_3, Third Src homology 3 domain (or SH3C) of Intersectin-2

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           +ALY Y +S   +++F+  + I  +   D  WW G    + G+FP+NYV
Sbjct: 3   IALYPYSSSEPGDLTFNEGEEIL-VTQKDGEWWTGSIEDRTGIFPSNYV 50

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The third SH3 domain (SH3C) of ITSN2 has been shown to bind the K15 protein of Kaposi's sarcoma-associated herpesvirus. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212999 cd12066, SH3_GRAF3, Src Homology 3 domain of GTPase Regulator Associated with Focal adhesion kinase 3

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 472 AVALYDYQASADDEISFDPDDIITNI-EMIDEGWWRGYCHGQYGLFPANYV 521
           A A+Y  +A    E+SF    I +N+   ++ GW +    G+ GL P NYV
Sbjct: 2   AKAMYSCKAEHSHELSFPQGAIFSNVYPSVEPGWLKATYEGKTGLVPENYV 52

GRAF3 is also called Rho GTPase activating protein 42 (ARHGAP42) or ARHGAP10-like. Though its function has not been characterized, it may be a GAP with activity towards RhoA and Cdc42, based on its similarity to GRAF and GRAF2. It contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. The SH3 domain of GRAF and GRAF2 binds PKNbeta, a target of the small GTPase Rho. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 55

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 39.8 bits (94), Expect = 0.003
 Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 7/96 (7%)

Query: 367 EEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKL 426
           +E E+E +R+++E  K  E  +KE L    +  KEE   ++ + E+E +ER+   E QKL
Sbjct: 34  KEAEEEAKRILEEAKKEAEAIKKEAL----LEAKEEIHKLRNEFEKELRERR--NELQKL 87

Query: 427 LLKKQQEEDRLKAEEQARLLEQERLMEELRQQGTNE 462
             +  Q+E+ L   +   L ++E  +E+  ++   +
Sbjct: 88  EKRLLQKEENLD-RKLELLEKREEELEKKEKELEQK 122

Length = 520

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 16/138 (11%)

Query: 362 QNSNKEEEEKEKQRMVQ-EEIKRKELERKEELEK---EQIRIKEEQENIKKKKEQEEKER 417
               K+ EE+  Q   + EE KR E E +  L++   +  R++ EQ+++K K E    ER
Sbjct: 620 VAKQKQAEEQLVQANAELEEQKRAEAEARTALKQARLDLQRLQNEQQSLKDKLELAIAER 679

Query: 418 KEQEENQ--------KLLLKKQQEEDRLKAEEQARLLEQERLMEELRQQGTNEDTEEDLG 469
           K+Q E Q        K LL++QQ         +    E         Q     + +  L 
Sbjct: 680 KQQAETQLRQLDAQLKQLLEQQQA---FLEALKDDFRELRTERLAKWQV-VEGELDNQLA 735

Query: 470 YTAVALYDYQASADDEIS 487
             + A+   +  A   + 
Sbjct: 736 QLSAAIEAARTQAKARLK 753

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein

 Score = 40.0 bits (93), Expect = 0.003
 Identities = 39/198 (19%), Positives = 81/198 (40%), Gaps = 38/198 (19%)

Query: 268 NLRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKK 327
           N R    +L ++  +E  KR+++ KE+   K QID ++AQ+  +        + +E+ +K
Sbjct: 195 NFRRDMTDLKERESQEDAKRAQQLKEELDKK-QIDADKAQQKADFAQDNADKQRDEVRQK 253

Query: 328 LNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELE 387
                ++P    T +P                                    E K+    
Sbjct: 254 QQEAKNLPKPADTSSPK-----------------------------------EDKQVAEN 278

Query: 388 RKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLE 447
           +K E+EK QI IK+  E   K K+ +  + K++ +  +   + ++ E + K E  A   +
Sbjct: 279 QKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQKKREPVAE--D 336

Query: 448 QERLMEELRQQGTNEDTE 465
            ++   ++  Q T+ + +
Sbjct: 337 LQKTKPQVEAQPTSLNED 354

This family consists of several Borrelia P83/P100 antigen proteins. Length = 489

>gnl|CDD|212741 cd11807, SH3_ASPP, Src homology 3 domain of Apoptosis Stimulating of p53 proteins (ASPP)

 Score = 35.8 bits (83), Expect = 0.003
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEG---WWRGYCHGQYGLFPANYVSL 523
           AL+DY+A   DE+SF   D +T +   D+    WW    + + G  P N + L
Sbjct: 5   ALFDYEAENGDELSFREGDELTVLRKGDDDETEWWWARLNDKEGYVPRNLLGL 57

The ASPP family of proteins bind to important regulators of apoptosis (p53, Bcl-2, and RelA) and cell growth (APCL, PP1). They share similarity at their C-termini, where they harbor a proline-rich region, four ankyrin (ANK) repeats, and an SH3 domain. Vertebrates contain three members of the family: ASPP1, ASPP2, and iASPP. ASPP1 and ASPP2 activate the apoptotic function of the p53 family of tumor suppressors (p53, p63, and p73), while iASPP is an oncoprotein that specifically inhibits p53-induced apoptosis. The expression of ASPP proteins is altered in tumors; ASPP1 and ASPP2 are downregulated whereas iASPP is upregulated is some cancer types. ASPP proteins also bind and regulate protein phosphatase 1 (PP1), and this binding is competitive with p53 binding. The SH3 domain and the ANK repeats of ASPP contribute to the p53 binding site; they bind to the DNA binding domain of p53. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|221408 pfam12072, DUF3552, Domain of unknown function (DUF3552)

 Score = 38.7 bits (91), Expect = 0.003
 Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 25/123 (20%)

Query: 361 IQNSNKEEEE--KEKQRMVQEEIKR------KEL-ERKEELEKEQIRI--KEEQ-----E 404
           I+ + KE E   KE     +EEI +      +EL ER+ EL++++ R+  KEE      E
Sbjct: 40  IEEAKKEAEALKKEALLEAKEEIHKLRAEAERELKERRNELQRQEKRLLQKEETLDRKDE 99

Query: 405 NIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLE---------QERLMEEL 455
           +++KK+E  E++ KE    Q+ L +K++E + L  E+Q  L           +E L+EE+
Sbjct: 100 SLEKKEESLEEKEKELAARQQQLEEKEEELEELIEEQQQELERISGLTAEEAKEILLEEV 159

Query: 456 RQQ 458
             +
Sbjct: 160 EAE 162

This presumed domain is functionally uncharacterized. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with pfam00013, pfam01966. This domain has a single completely conserved residue A that may be functionally important. Length = 201

>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 31/256 (12%), Positives = 81/256 (31%), Gaps = 15/256 (5%)

Query: 181  EKIEKHESQKDYAKGFGGKF-GIESDRQDKSAVGWDHVEKVDKHQSQKDDNRQVVTSSKV 239
            E +E+ E  ++       +       +  K                 K   ++   SS  
Sbjct: 1139 EALEEQEEVEEKEIAKEQRLKSKTKGKASKLRK-----------PKLKKKEKKKKKSSAD 1187

Query: 240  KDLIAANSTNASKENIKPKPNIGHVKPSNLRAKFENLAKQTEEESRKRSEEEKEKRKLKD 299
            K   A+   N+ + +   K  +     +       +  +  EE+  K  +   ++ K K 
Sbjct: 1188 KSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKK 1247

Query: 300  QIDLEQAQKLEERRLSELKIKEEEIEKKLNGHSDVPLSPSTETPPVPVKSILKQPTSDGI 359
                + ++  +E    +L  + +         +     P     P    +   +P+S   
Sbjct: 1248 NNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTK 1307

Query: 360  PIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKE 419
                   E          +++   K+  RK++ +    +    Q +   ++ +++K    
Sbjct: 1308 KKVKKRLEGSLAAL---KKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSS 1364

Query: 420  QEENQKLLLKKQQEED 435
             E++    +   ++ED
Sbjct: 1365 SEDDDDSEVDDSEDED 1380

Length = 1388

>gnl|CDD|212858 cd11925, SH3_SH3RF3_3, Third Src Homology 3 domain of SH3 domain containing ring finger 3, an E3 ubiquitin-protein ligase

 Score = 35.7 bits (82), Expect = 0.003
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC--HGQYGLFPANYVS 522
           +ALY Y+   +DE+     ++   IE   +GW++G     G  G+FP NYV+
Sbjct: 4   LALYAYKPQKNDELELRKGEMYRVIEKCQDGWFKGTSLRTGVSGVFPGNYVT 55

SH3RF3 is also called POSH2 (Plenty of SH3s 2) or SH3MD4 (SH3 multiple domains protein 4). It is a scaffold protein with E3 ubiquitin-protein ligase activity. It was identified in the screen for interacting partners of p21-activated kinase 2 (PAK2). It may play a role in regulating JNK mediated apoptosis in certain conditions. It also interacts with GTP-loaded Rac1. SH3RF3 is highly homologous to SH3RF1; it also contains an N-terminal RING finger domain and four SH3 domains. This model represents the third SH3 domain, located in the middle, of SH3RF3. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 39.8 bits (94), Expect = 0.003
 Identities = 28/163 (17%), Positives = 68/163 (41%), Gaps = 35/163 (21%)

Query: 268 NLRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKK 327
            L A  E L ++ E+++ +     KE  KLK+++  E+ +KL+E     L+  E+E ++ 
Sbjct: 520 ELIASLEELERELEQKAEEAEALLKEAEKLKEEL-EEKKEKLQEEEDKLLEEAEKEAQQA 578

Query: 328 LNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELE 387
           +                                     K+E ++  + + Q +       
Sbjct: 579 IK----------------------------------EAKKEADEIIKELRQLQKGGYASV 604

Query: 388 RKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKK 430
           +  EL + + R+ +  E  +KKK++++++++E +   ++    
Sbjct: 605 KAHELIEARKRLNKANEKKEKKKKKQKEKQEELKVGDEVKYLS 647

Length = 782

>gnl|CDD|212941 cd12008, SH3_Src, Src homology 3 domain of Src Protein Tyrosine Kinase

 Score = 35.5 bits (81), Expect = 0.003
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY--CHGQYGLFPANYVS 522
           T VALYDY++  + ++SF   + +  +   +  WW  +    GQ G  P+NYV+
Sbjct: 1   TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYVA 54

Src (or c-Src) is a cytoplasmic (or non-receptor) PTK and is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells, and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 39.6 bits (92), Expect = 0.004
 Identities = 43/206 (20%), Positives = 85/206 (41%), Gaps = 18/206 (8%)

Query: 270 RAKFENLAKQTEEESRKRSEEEKEKRKL-KDQIDLEQAQKLEERRLSELKIKEEEIEKKL 328
           +   E    + + E  + +    +  KL +++IDL Q    +E+   E   +E E E+++
Sbjct: 208 KKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEI 267

Query: 329 NGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELER 388
                       +   +  + +               KEEEE + + +  E  K  + E+
Sbjct: 268 LAQVLKENKEEEKEKKLQEEELKL-----------LAKEEEELKSELLKLERRKVDDEEK 316

Query: 389 KEELEKEQIRIKEEQENIKKKKEQEEKE------RKEQEENQKLLLKKQQEEDRLKAEEQ 442
            +E EKE  ++++E +  K++ E+ EKE      ++E EE ++  L+K QE+     EE 
Sbjct: 317 LKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEEL 376

Query: 443 ARLLEQERLMEELRQQGTNEDTEEDL 468
               + E        +   E+ E   
Sbjct: 377 LAKKKLESERLSSAAKLKEEELELKN 402

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 39.5 bits (92), Expect = 0.004
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 5/92 (5%)

Query: 368 EEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKL- 426
           EE K KQ   QE +K+ E ER +  E+++   + E++   ++K+QEE+ RK   E +K  
Sbjct: 90  EELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKA 149

Query: 427 ---LLKKQQEEDRLKAEEQA-RLLEQERLMEE 454
                K   E  +LKA  +A +  E+     E
Sbjct: 150 EAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAE 181

Length = 387

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 39.5 bits (93), Expect = 0.004
 Identities = 44/189 (23%), Positives = 87/189 (46%), Gaps = 32/189 (16%)

Query: 276 LAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKKLNGHSDVP 335
           L +Q EE  ++R EE +E+ + ++Q+D    +  EE      + +E++ + +        
Sbjct: 76  LQEQIEEREKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKREKQKKLREE------ 129

Query: 336 LSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEE---EKEKQRMVQEEIKRKELERKEEL 392
                      +    ++        +   KEEE   E+E++  + E  + K  ER+EE 
Sbjct: 130 -----------IDEFNEE--------RIERKEEEKEREREEELKILEYQREKA-EREEER 169

Query: 393 EKEQIRIKEEQENIKKK-KEQEEKERKEQEENQKLLLKKQQEED--RLKAEEQARLLEQE 449
           E E+   KEE+E    + + Q+E+   E+EE  +L     QEE   + + +E+    ++ 
Sbjct: 170 EAERRERKEEKEREVARLRAQQEEAEDEREELDELRADLYQEEYERKERQKEKEEAEKRR 229

Query: 450 RLMEELRQQ 458
           R  +EL++ 
Sbjct: 230 RQKQELQRA 238

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 39.0 bits (91), Expect = 0.004
 Identities = 19/84 (22%), Positives = 42/84 (50%), Gaps = 4/84 (4%)

Query: 366 KEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQK 425
           +   E+ +Q+ +++    ++  ++ E   +Q   K++Q    K K+  E + K + E + 
Sbjct: 83  QRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAE- 141

Query: 426 LLLKKQQEEDRLKAEEQARLLEQE 449
              KK +EE + +AEE+A+     
Sbjct: 142 ---KKAKEEAKKQAEEEAKAKAAA 162

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 39.8 bits (93), Expect = 0.004
 Identities = 37/195 (18%), Positives = 73/195 (37%), Gaps = 21/195 (10%)

Query: 264 VKPSNLRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEE 323
           V+    +      A+QT E     +E E E    K +    + +  +   L+E  I+EE+
Sbjct: 248 VELEVEQQPAGKTAEQTREVKIILAETEAEVAAWKAE---TRREAEQAEILAEQAIQEEK 304

Query: 324 IEKKLNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKR 383
            + +     +V  + + E   + V  I +Q  ++   ++   +       QR  QEE   
Sbjct: 305 AQAEQ----EVQHAKALEAREMRVGLIERQKETE---LEPQERSYFINAAQRQAQEEA-- 355

Query: 384 KELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQ---EENQKLLLKKQQE-EDRLKA 439
                K      +    + +  ++  +E EE ER EQ       +   ++Q E   R +A
Sbjct: 356 -----KAAANIAEAIGAQAEAAVETARETEEAERAEQAALVAAAEAAEQEQVEIAVRAEA 410

Query: 440 EEQARLLEQERLMEE 454
            +     +   +  E
Sbjct: 411 AKAEAEAQAAEIKAE 425

Length = 548

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 39.5 bits (93), Expect = 0.004
 Identities = 23/81 (28%), Positives = 54/81 (66%), Gaps = 5/81 (6%)

Query: 365 NKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQ 424
             ++  K+ +++V++  K++E E+KE+ +K     K+E+E  ++K+++EE++ +E+EE  
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEE-- 461

Query: 425 KLLLKKQQEEDRLKAEEQARL 445
               ++++EE+  K ++QA L
Sbjct: 462 ---AEEEKEEEEEKKKKQATL 479

Length = 482

>gnl|CDD|212864 cd11931, SH3_SH3RF3_2, Second Src Homology 3 domain of SH3 domain containing ring finger 3, an E3 ubiquitin-protein ligase

 Score = 35.3 bits (81), Expect = 0.004
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 474 ALYDYQASADDE----ISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           ALYD++    D+    ++F  D+I+T I  +DE W  G    + G+FP  YV
Sbjct: 4   ALYDFEIKDKDQDKDCLTFTKDEILTVIRRVDENWAEGMLGDKIGIFPILYV 55

SH3RF3 is also called POSH2 (Plenty of SH3s 2) or SH3MD4 (SH3 multiple domains protein 4). It is a scaffold protein with E3 ubiquitin-protein ligase activity. It was identified in the screen for interacting partners of p21-activated kinase 2 (PAK2). It may play a role in regulating JNK mediated apoptosis in certain conditions. It also interacts with GTP-loaded Rac1. SH3RF3 is highly homologous to SH3RF1; it also contains an N-terminal RING finger domain and four SH3 domains. This model represents the second SH3 domain, located C-terminal of the first SH3 domain at the N-terminal half, of SH3RF3. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional

 Score = 39.6 bits (92), Expect = 0.004
 Identities = 34/111 (30%), Positives = 47/111 (42%), Gaps = 9/111 (8%)

Query: 335 PLSPSTETPPVPVKSILKQPTS-DGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELE 393
           P SP T   P PV  +  QPT+   +PI  +N       ++     E KRK   R  EL+
Sbjct: 421 PQSPGTSYGPEPVGPVPPQPTNPYVMPISMANMVYPGHPQEH--GHERKRK---RGGELK 475

Query: 394 KEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQAR 444
           +E I   E  + +KK KE++E   KE E        K+  E   K      
Sbjct: 476 EELI---ETLKLVKKLKEEQESLAKELEATAHKSEIKKIAESEFKNAGAKT 523

Length = 663

>gnl|CDD|212735 cd11801, SH3_JIP1_like, Src homology 3 domain of JNK-interacting proteins 1 and 2, and similar domains

 Score = 35.4 bits (82), Expect = 0.004
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC--HGQYGLFPANYV 521
           T  AL+ +    +DEI  D  D +   +  D+ W  G     GQ G+FPA YV
Sbjct: 1   THRALHKFIPRHEDEIELDIGDPVYVEQEADDLWCEGTNLRTGQRGIFPAAYV 53

JNK-interacting proteins (JIPs) function as scaffolding proteins for c-Jun N-terminal kinase (JNK) signaling pathways. They bind to components of Mitogen-activated protein kinase (MAPK) pathways such as JNK, MKK, and several MAP3Ks such as MLK and DLK. There are four JIPs (JIP1-4); all contain a JNK binding domain. JIP1 and JIP2 also contain SH3 and Phosphotyrosine-binding (PTB) domains. Both are highly expressed in the brain and pancreatic beta-cells. JIP1 functions as an adaptor linking motor to cargo during axonal transport and also is involved in regulating insulin secretion. JIP2 form complexes with fibroblast growth factor homologous factors (FHFs), which facilitates activation of the p38delta MAPK. The SH3 domain of JIP1 homodimerizes at the interface usually involved in proline-rich ligand recognition, despite the lack of this motif in the domain itself. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|218517 pfam05236, TAF4, Transcription initiation factor TFIID component TAF4 family

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 5/52 (9%)

Query: 410 KEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQERLMEELRQQGTN 461
           K++EE+ER+ +   +  L   +Q   + KA+E     EQ+   EE R +  N
Sbjct: 121 KQKEEEERRVERRRELGLEDPEQLRLKQKAKE-----EQKAESEETRHRAAN 167

This region of similarity is found in Transcription initiation factor TFIID component TAF4. Length = 255

>gnl|CDD|220716 pfam10359, Fmp27_WPPW, RNA pol II promoter Fmp27 protein domain

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 11/120 (9%)

Query: 370 EKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLK 429
              K R VQ E+     ER ++LE+   +IK+ +E +   +  + +E +   E  +  L 
Sbjct: 154 GSNKPRRVQRELLE---ERLKQLEE---QIKKLEEKLDDLELNDTEELQSDLEELEEELS 207

Query: 430 KQQEEDRLKAEEQARLLEQERLMEELRQQGTNEDTEEDLGYTAVALYDYQASADDEISFD 489
             +E  RL+  E+  LLE     EE   + ++ DTE  +  +  +L    +S +    F 
Sbjct: 208 VLKE--RLEFLEK--LLEDLERSEESSDRSSSTDTESSIADSLSSL-SNASSDESVSDFH 262

Fmp27_WPPW is a conserved domain of a family of proteins involved in RNA polymerase II transcription initiation. It contains characteristic HQR and WPPW sequence motifs. and is towards the C-terminal in members which contain Fmp27_SW pfam10305. Length = 470

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	525
PF02218	37	HS1_rep: Repeat in HS1/Cortactin; InterPro: IPR003	99.84
PF02218	37	HS1_rep: Repeat in HS1/Cortactin; InterPro: IPR003	99.81
PF14604	49	SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3	99.25
PF07653	55	SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3	99.07
smart00326	58	SH3 Src homology 3 domains. Src homology 3 (SH3) d	98.86
KOG2070|consensus	661		98.84
PF00018	48	SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Ho	98.8
cd00174	54	SH3 Src homology 3 domains; SH3 domains bind to pr	98.79
KOG1118|consensus	366		98.76
KOG2199|consensus	462		98.76
KOG1029|consensus	1118		98.71
KOG4225|consensus	489		98.58
KOG4226|consensus	379		98.56
KOG2856|consensus	472		98.48
KOG0162|consensus	1106		98.39
KOG4348|consensus	627		98.35
KOG4348|consensus	627		98.35
KOG4225|consensus	489		98.33
KOG3655|consensus	484		98.3
KOG2996|consensus	865		98.27
KOG1029|consensus	1118		98.13
KOG1264|consensus	1267		98.05
KOG2546|consensus	483		98.01
KOG4226|consensus	379		97.88
KOG1702|consensus	264		97.83
KOG0515|consensus	752		97.77
KOG1843|consensus	473		97.75
KOG4792|consensus	293		97.61
KOG3875|consensus	362		97.59
KOG3601|consensus	222		97.54
KOG2222|consensus	848		97.2
KOG3523|consensus	695		96.79
KOG4278|consensus	1157		96.68
KOG3632|consensus	1335		96.65
KOG1451|consensus	812		96.01
KOG4773|consensus	386		95.94
KOG4429|consensus	421		95.46
KOG4792|consensus	293		95.24
KOG3725|consensus	375		95.16
KOG0609|consensus	542		95.12
KOG3771|consensus	460		94.72
KOG3557|consensus	721		94.19
KOG0197|consensus	468		94.11
KOG4575|consensus	874		93.52
KOG3775|consensus	482		92.39
KOG3565|consensus	640		91.18
KOG3632|consensus	1335		89.85
PF14603	89	hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.	88.07
PF08239	55	SH3_3: Bacterial SH3 domain; InterPro: IPR013247 S	86.06
KOG0199|consensus	1039		85.17

>PF02218 HS1_rep: Repeat in HS1/Cortactin; InterPro: IPR003134 The cortactin or HS1 repeat is a tandem repeat of 37-amino acid actin-binding domains

Probab=99.84  E-value=3.8e-22  Score=145.14  Aligned_cols=37  Identities=76%  Similarity=1.186  Sum_probs=28.3

Q ss_pred             CCCcccccccccccccccCccchhhhhhccCCCCccc
Q psy194          121 GFGGKFGVQNDRVDKSAVTWDHKEVIEKHASQKDYSS  157 (525)
Q Consensus       121 GfGGKfGVq~dr~DksAvg~~y~~k~~kH~Sq~dy~~  157 (525)
                      |||||||||+||||||||||+|+++|++|+||+||++
T Consensus         1 GfGGKfGVq~Dr~DkSAvg~~y~~k~~kH~SQ~Dy~k   37 (37)
T PF02218_consen    1 GFGGKFGVQKDRQDKSAVGWDYQEKLEKHESQKDYSK   37 (37)
T ss_pred             CCCcccceecccccccccccccccccccCCCcccccC
Confidence            6777777777777777777777777777777777764

The repeat is named after human cortactin and HS1, proteins involved in cytoskeletal rearrangements implicated in cell migration and apoptosis, respectively. Cortactin contains 6.5 tandem copies of the repeat and is conserved among metazoans, although e.g. insect cortactin and splice variants contain fewer copies. Hematopoietic lineage cell specific protein 1 (HS1) contains 3.5 tandem copies of the cortactin repeat and is mainly expressed in hematopoietic cells. Both cortactin and HS1 contain a C-terminal SH3 domain (IPR001452 from INTERPRO). The cortactin repeat domain binds filamentous actin (F-actin) in proteins that modulate the assembly of the actin cytoskeleton. Secondary structure predictions indicate that the cortactin repeat could exhibit a helix-turn-helix structure [, ].

>PF02218 HS1_rep: Repeat in HS1/Cortactin; InterPro: IPR003134 The cortactin or HS1 repeat is a tandem repeat of 37-amino acid actin-binding domains

Probab=99.81  E-value=3.6e-21  Score=140.09  Aligned_cols=37  Identities=65%  Similarity=1.114  Sum_probs=36.3

Q ss_pred             CCCcccccccccccccccCccchhcccccccccCccc
Q psy194           84 GYGGKFGVEKDRMDESAVGHDYVAQLHQHESQSDYKT  120 (525)
Q Consensus        84 g~ggkfgv~~dr~dksavg~~y~~~~~kh~sq~d~~~  120 (525)
                      |||||||||+||||||||||+|+++|++|+||+||++
T Consensus         1 GfGGKfGVq~Dr~DkSAvg~~y~~k~~kH~SQ~Dy~k   37 (37)
T PF02218_consen    1 GFGGKFGVQKDRQDKSAVGWDYQEKLEKHESQKDYSK   37 (37)
T ss_pred             CCCcccceecccccccccccccccccccCCCcccccC
Confidence            8999999999999999999999999999999999986

The repeat is named after human cortactin and HS1, proteins involved in cytoskeletal rearrangements implicated in cell migration and apoptosis, respectively. Cortactin contains 6.5 tandem copies of the repeat and is conserved among metazoans, although e.g. insect cortactin and splice variants contain fewer copies. Hematopoietic lineage cell specific protein 1 (HS1) contains 3.5 tandem copies of the cortactin repeat and is mainly expressed in hematopoietic cells. Both cortactin and HS1 contain a C-terminal SH3 domain (IPR001452 from INTERPRO). The cortactin repeat domain binds filamentous actin (F-actin) in proteins that modulate the assembly of the actin cytoskeleton. Secondary structure predictions indicate that the cortactin repeat could exhibit a helix-turn-helix structure [, ].

>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A

Probab=99.25  E-value=8.6e-12  Score=95.47  Aligned_cols=49  Identities=57%  Similarity=1.073  Sum_probs=45.2

Q ss_pred             EeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCee
Q psy194          474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS  522 (525)
Q Consensus       474 ALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE  522 (525)
                      |||+|.+..+++|+|.+||+|.|+...+++||.|+.+|+.|+||+|||+
T Consensus         1 Al~~y~~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~   49 (49)
T PF14604_consen    1 ALYDYEAQDPDELSFKKGDVITVLEKSDDGWWYGRNTGRTGLFPANYVE   49 (49)
T ss_dssp             ESSCBCSSSTTB-EB-TTEEEEEEEESSTSEEEEEETTEEEEEEGGGEE
T ss_pred             CCccCCCCCcCEeeEcCCCEEEEEEeCCCCEEEEEECCEEEEECHHhCC
Confidence            7899999999999999999999999889999999999999999999985

...

>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.07  E-value=2.3e-10  Score=88.58  Aligned_cols=54  Identities=41%  Similarity=0.783  Sum_probs=48.3

Q ss_pred             EEEEeccCCCCCCCCcccCCCCeEEEE-EeecCCeEEEEECCeeeeecCCCeeec
Q psy194          471 TAVALYDYQASADDEISFDPDDIITNI-EMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       471 ~AvALYDYqAqsedELSFskGDIItVL-ek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      +++|+++|.+..+++|+|.+||+|.|+ ...+.+||.|+.+|+.||||++||+++
T Consensus         1 ~~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~~g~~G~~P~~~v~~~   55 (55)
T PF07653_consen    1 YYRAIFDYVAEDPDELSFKKGDVIEVLGEKDDDGWWLGENNGRRGWFPSSYVEEI   55 (55)
T ss_dssp             EEEESSSBESSSTTB-EB-TTEEEEEEEEECSTSEEEEEETTEEEEEEGGGEEEH
T ss_pred             CEEEeEEECCCCCCceEEecCCEEEEEEeecCCCEEEEEECCcEEEEcHHHEEEC
Confidence            478999999999999999999999999 777889999999999999999999863

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....

>smart00326 SH3 Src homology 3 domains

Probab=98.86  E-value=5.8e-09  Score=77.57  Aligned_cols=55  Identities=51%  Similarity=0.902  Sum_probs=50.6

Q ss_pred             cEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEEC-CeeeeecCCCeeec
Q psy194          470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH-GQYGLFPANYVSLQ  524 (525)
Q Consensus       470 ~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~-Gr~G~FPSnYVE~L  524 (525)
                      ..++|+|+|.+...++|+|.+||+|.++.....+||.+++. ++.||||++|++.+
T Consensus         3 ~~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~~~   58 (58)
T smart00326        3 PQVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVEEI   58 (58)
T ss_pred             cEEEEeeeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEeCCCCEEEEchHHEEEC
Confidence            46899999999999999999999999999888999999976 99999999999864

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.

>KOG2070|consensus

Probab=98.84  E-value=1.6e-09  Score=116.15  Aligned_cols=56  Identities=38%  Similarity=0.765  Sum_probs=52.9

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|-|.|.+...+||+|.+||+|+|.+..+.|||.|+++|+.||||+|||..+
T Consensus        17 pLvvrAkf~F~gsNnDELsf~KgDvItVTq~eeGGWWEGTlng~TGWFPsnYV~ei   72 (661)
T KOG2070|consen   17 PLVVRAKFNFQGSNNDELSFSKGDVITVTQVEEGGWWEGTLNGRTGWFPSNYVREI   72 (661)
T ss_pred             ceEEEEEeecccCCCceeccccCCEEEEEEeccCcceeccccCccCccchHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999765

>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=98.80  E-value=7.8e-09  Score=77.99  Aligned_cols=46  Identities=43%  Similarity=0.848  Sum_probs=42.0

Q ss_pred             EEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEEC--CeeeeecC
Q psy194          473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPA  518 (525)
Q Consensus       473 vALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~--Gr~G~FPS  518 (525)
                      +|||+|.+...++|+|.+||+|.|++..+.+||.++..  ++.||||+
T Consensus         1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~   48 (48)
T PF00018_consen    1 RALYDFDAEDPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS   48 (48)
T ss_dssp             EESSCBETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred             CCCeeeCCCCCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence            58999999999999999999999999999999999953  79999995

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....

>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies

Probab=98.79  E-value=1.1e-08  Score=75.33  Aligned_cols=51  Identities=53%  Similarity=0.998  Sum_probs=47.3

Q ss_pred             EEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECC-eeeeecCCCee
Q psy194          472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHG-QYGLFPANYVS  522 (525)
Q Consensus       472 AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~G-r~G~FPSnYVE  522 (525)
                      ++++|+|.+...++|+|.+||+|.++.....+||.+++.+ +.||||++||+
T Consensus         2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~   53 (54)
T cd00174           2 VRALYDYDARDPDELSFKKGDIIEVLEKSDDGWWEGRLLGGKRGLFPSNYVE   53 (54)
T ss_pred             EEEEEeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEccccCc
Confidence            6799999999999999999999999998888999999755 99999999986

>KOG1118|consensus

Probab=98.76  E-value=2.8e-09  Score=109.08  Aligned_cols=56  Identities=39%  Similarity=0.781  Sum_probs=53.8

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ..+|+|||||.+++++||.|+.||+|+|+..+|++||.|+..|..|+||.|||++|
T Consensus       306 ~p~cralYdFepenEgEL~fkeGDlI~l~~QIdenWyeG~~~g~sG~FPvnYv~vl  361 (366)
T KOG1118|consen  306 QPCCRALYDFEPENEGELDFKEGDLITLTNQIDENWYEGEKHGESGMFPVNYVEVL  361 (366)
T ss_pred             chhheeeeccCCCCCCccCcccCceeeehhhcCcchhhheecCccCccccceeEEe
Confidence            46899999999999999999999999999999999999999999999999999876

>KOG2199|consensus

Probab=98.76  E-value=1.7e-09  Score=113.61  Aligned_cols=55  Identities=44%  Similarity=0.845  Sum_probs=52.2

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeee
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL  523 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~  523 (525)
                      ...++|||||.+..++||+|.+||||+|++..+..||.|.+.+..|+||+|||..
T Consensus       215 ~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~~~WWKG~~~~~~GlFPsnfVT~  269 (462)
T KOG2199|consen  215 VRKVRALYDFEAAEDNELSFKAGDIITVLDDSDPNWWKGENHRGIGLFPSNFVTA  269 (462)
T ss_pred             chhhhhhhcccccCCCccceecCcEEEEcccCCcchhccccCCcccccchhhhhh
Confidence            4678999999999999999999999999999999999999999999999999964

>KOG1029|consensus

Probab=98.71  E-value=5.2e-09  Score=116.56  Aligned_cols=54  Identities=44%  Similarity=0.886  Sum_probs=51.1

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCee
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS  522 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE  522 (525)
                      ...++|+|||.++.+++|+|++||||.|+.++++.||.|..+|..||||+|||.
T Consensus      1053 v~qviamYdY~AqndDELsF~kgdiI~VlnkdepeWW~Ge~ng~sGLFPSNYV~ 1106 (1118)
T KOG1029|consen 1053 VCQVIAMYDYEAQNDDELSFKKGDIINVLNKDEPEWWSGERNGKSGLFPSNYVQ 1106 (1118)
T ss_pred             cceeEEeeccccCCcccccccCCCEEEecCCCChhhhcccccCccccCcccccc
Confidence            346789999999999999999999999999999999999999999999999994

>KOG4225|consensus

Probab=98.58  E-value=5.5e-08  Score=103.39  Aligned_cols=57  Identities=35%  Similarity=0.775  Sum_probs=53.8

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeecC
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQQ  525 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~LQ  525 (525)
                      -..++|||+|.++...||+|.+||||.|+...|..|+.|+.+|+.|+||+|||+.++
T Consensus       230 ~~~aralf~F~~qt~kEL~~~kGDIVyI~rkvD~nWyeGEhhGr~GifP~sYvE~~~  286 (489)
T KOG4225|consen  230 KRAARALFDFEAQTPKELPFNKGDIVYILRKVDQNWYEGEHHGRVGIFPASYVEILT  286 (489)
T ss_pred             cchhhheeccccCCccccccCCCCEEEEEeeccCceeeeeecceecceechheeecC
Confidence            345899999999999999999999999999999999999999999999999999873

>KOG4226|consensus

Probab=98.56  E-value=4.9e-08  Score=99.08  Aligned_cols=55  Identities=40%  Similarity=0.795  Sum_probs=52.0

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeee
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL  523 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~  523 (525)
                      .+.+++-|.|.++.++||+|.+|+.|+|++++.+|||+|..+|..||||+|||.+
T Consensus       107 ~t~AvVKf~Y~a~~eDELsLtKGtrv~vmEKssDGWWrG~~ng~VGWFPSNYv~E  161 (379)
T KOG4226|consen  107 NTPAVVKFNYVAEREDELSLTKGTRVTVMEKSSDGWWRGSYNGQVGWFPSNYVTE  161 (379)
T ss_pred             CCceEEEEeeccccccccccccCcEEEEEEeccCcceecccCCeeccccccceeh
Confidence            4568899999999999999999999999999999999999999999999999975

>KOG2856|consensus

Probab=98.48  E-value=4.5e-08  Score=102.31  Aligned_cols=67  Identities=37%  Similarity=0.680  Sum_probs=56.1

Q ss_pred             CCCCCCcccCCc--cEEEEeccCCCCCCCCcccCCCCeEEEEEeec-CCeEEEEEC-CeeeeecCCCeeec
Q psy194          458 QGTNEDTEEDLG--YTAVALYDYQASADDEISFDPDDIITNIEMID-EGWWRGYCH-GQYGLFPANYVSLQ  524 (525)
Q Consensus       458 ~~~~yde~~~~g--~~AvALYDYqAqsedELSFskGDIItVLek~D-eGWW~Gr~~-Gr~G~FPSnYVE~L  524 (525)
                      +.|+|+++...+  +.++|||||.++..++|+|+.||.|..|...| -||+.|+++ |+.||||+|||+-+
T Consensus       401 dsnPfdd~a~~g~~v~vraLYDY~gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~~G~vGLyPAnYVe~~  471 (472)
T KOG2856|consen  401 DSNPFDDDAKGGDFVRVRALYDYAGQEGDELSFKAGDELEKLEEEDEQGWCKGRLDSGRVGLYPANYVECI  471 (472)
T ss_pred             CCCCCcccccCCceeeEEeeeccCcccccchhhccccHhhhcCCccccccccccccCCcccccchhhhhcc
Confidence            567776443322  57899999999999999999999999887665 499999976 99999999999865

>KOG0162|consensus

Probab=98.39  E-value=1.5e-07  Score=104.86  Aligned_cols=55  Identities=44%  Similarity=0.765  Sum_probs=52.3

Q ss_pred             cEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       470 ~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ..|.|+|+|.+++.+||+|.+|++|.|+....+|||.|..+|+.||||.+||+.+
T Consensus      1052 p~~~A~Y~y~gq~~dEls~~~~diIei~~edpSGWw~gk~~~keG~~P~~Yv~~~ 1106 (1106)
T KOG0162|consen 1052 PVCEALYDYPGQDVDELSFKKGDIIEIMREDPSGWWLGKLNGKEGLFPGNYVTEY 1106 (1106)
T ss_pred             cceeeeccCCCCCcccccccCCCEEEEeccCCCcchhhccCCccccccccccccC
Confidence            5799999999999999999999999999999999999999999999999999763

>KOG4348|consensus

Probab=98.35  E-value=2.3e-07  Score=98.87  Aligned_cols=56  Identities=36%  Similarity=0.720  Sum_probs=51.4

Q ss_pred             cEEEEeccCCCCCCCCcccCCCCeEEEEEee--cCCeEEEEECCeeeeecCCCeeecC
Q psy194          470 YTAVALYDYQASADDEISFDPDDIITNIEMI--DEGWWRGYCHGQYGLFPANYVSLQQ  525 (525)
Q Consensus       470 ~~AvALYDYqAqsedELSFskGDIItVLek~--DeGWW~Gr~~Gr~G~FPSnYVE~LQ  525 (525)
                      -+|+++|.|.++.+++|.|+.||+|.+|.+.  +-|||+|+++|+.|+||-|||+.+|
T Consensus       262 eycrv~F~Ye~qndDELt~KEgdil~lItK~cgdaGWweGELnGk~GvFPDNFv~lv~  319 (627)
T KOG4348|consen  262 EYCRVKFVYEPQNDDELTLKEGDILILITKNCGDAGWWEGELNGKKGVFPDNFVELVQ  319 (627)
T ss_pred             hheeeeeeecCCCccceeeccccEEEEecccccccceeeeeecCccccCCchhhhhcC
Confidence            4799999999999999999999999888754  5699999999999999999998875

>KOG4348|consensus

Probab=98.35  E-value=8.8e-08  Score=101.91  Aligned_cols=56  Identities=36%  Similarity=0.796  Sum_probs=53.1

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...|+++|.|.++.+++|.|..||||.|+....+|||.|.++|..|+||+|||..+
T Consensus       100 ~r~c~v~f~Y~pqndDELelkVGDiIeli~eVEeGWw~G~Lngk~GmFPsNFVkel  155 (627)
T KOG4348|consen  100 ARICVVTFAYSPQNDDELELKVGDIIELISEVEEGWWKGKLNGKVGMFPSNFVKEL  155 (627)
T ss_pred             ceeEEEEEeecCCCCceeeeeeccHHHhhhHhhhhhhhceecCcccccchhhceec
Confidence            35799999999999999999999999999999999999999999999999999876

>KOG4225|consensus

Probab=98.33  E-value=3.2e-07  Score=97.65  Aligned_cols=55  Identities=38%  Similarity=0.766  Sum_probs=51.6

Q ss_pred             cEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEE--ECCeeeeecCCCeeec
Q psy194          470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY--CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       470 ~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr--~~Gr~G~FPSnYVE~L  524 (525)
                      ..+.|||.|.++.+++|.|..||||.|++++|+||..|+  |.|+.|.||.|||+.+
T Consensus       433 l~yrAly~Y~pqnedeLEl~egDii~VmeKcddgWfvGts~rtg~fGtFPgnyV~~~  489 (489)
T KOG4225|consen  433 LKYRALYSYRPQNEDELELREGDIIDVMEKCDDGWFVGTSRRTGKFGTFPGNYVKRL  489 (489)
T ss_pred             ccceeccccCCCCchhheeccCCEEeeeecccCcceeccceecccccccCccccccC
Confidence            458999999999999999999999999999999999994  8999999999999863

>KOG3655|consensus

Probab=98.30  E-value=1.8e-07  Score=100.26  Aligned_cols=56  Identities=64%  Similarity=1.064  Sum_probs=53.1

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEE-ECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr-~~Gr~G~FPSnYVE~L  524 (525)
                      +.+++|+|+|++..+.+|+|.++++|++|...+.|||.|. .+|..||||+|||+++
T Consensus       427 ~q~A~A~~dyqAAddtEisf~p~d~it~Id~vdegww~g~~pdG~~glfPaNyV~li  483 (484)
T KOG3655|consen  427 PQTARALYDYQAADDTEISFDPPDAITLIDQVDEGWWTGQGPDGEVGLFPANYVELI  483 (484)
T ss_pred             CCCccccccccccCCcccccCCccccccccccCCccccccCCCCCcCcccccccccC
Confidence            5689999999999999999999999999999999999999 6899999999999876

>KOG2996|consensus

Probab=98.27  E-value=5.2e-07  Score=98.81  Aligned_cols=55  Identities=38%  Similarity=0.755  Sum_probs=49.7

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEee--cCCeEEEEECCeeeeecCCCeee
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMI--DEGWWRGYCHGQYGLFPANYVSL  523 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~--DeGWW~Gr~~Gr~G~FPSnYVE~  523 (525)
                      ...++|-|||-+..-.+|||..||+|.|+...  |.|||+|..+|+.||||++||++
T Consensus       805 ~g~AvarYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGevngrvGwFPstYVee  861 (865)
T KOG2996|consen  805 VGTAVARYDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEVNGRVGWFPSTYVEE  861 (865)
T ss_pred             eeeeeeccccCCCchhhcccccCCEEEEehhccccCceecceecCcccccccccccc
Confidence            34688899999999999999999999998865  57999999999999999999985

>KOG1029|consensus

Probab=98.13  E-value=1e-06  Score=98.84  Aligned_cols=56  Identities=43%  Similarity=0.741  Sum_probs=50.8

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEe--ecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEM--IDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek--~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      .+.|+|||.|.+.+.++|+|.+||||.|-..  ..+||..|.++|+.||||.|||+.|
T Consensus       693 ~vkyrAly~FeaRs~dEisf~pGDII~V~esq~aEPGWlaGel~gktGWFPenyvEki  750 (1118)
T KOG1029|consen  693 TVKYRALYPFEARSHDEISFEPGDIIIVFESQAAEPGWLAGELRGKTGWFPENYVEKI  750 (1118)
T ss_pred             eEEEeeecccccCCcccccccCCCEEEEehhccCCcccccceeccccCcCcHHHHhhc
Confidence            4678999999999999999999999988754  3689999999999999999999865

>KOG1264|consensus

Probab=98.05  E-value=1.7e-06  Score=97.48  Aligned_cols=57  Identities=46%  Similarity=0.763  Sum_probs=52.1

Q ss_pred             CccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECC-eeeeecCCCeeec
Q psy194          468 LGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHG-QYGLFPANYVSLQ  524 (525)
Q Consensus       468 ~g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~G-r~G~FPSnYVE~L  524 (525)
                      +.+.|+|||+|.+..++||+|.++-||+++++...|||+|..+| ..+|||+|||+.|
T Consensus       773 ~~vt~kAL~~Yka~r~DELSFpk~aiItnv~keeg~wWrGdYGg~iq~wfPsnyVeei  830 (1267)
T KOG1264|consen  773 PQVTVKALYDYKAKRSDELSFPKGAIITNVSKEEGGWWRGDYGGRIQQWFPSNYVEEI  830 (1267)
T ss_pred             cchhhhhhhccccCCcccccccccceeEeeeccCCceeecccccceeeeccHHHhhhh
Confidence            35789999999999999999999999999999999999999875 5699999999876

>KOG2546|consensus

Probab=98.01  E-value=2.6e-06  Score=90.66  Aligned_cols=54  Identities=44%  Similarity=0.830  Sum_probs=51.8

Q ss_pred             EEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       471 ~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      .+++||||.+..+++|+|..+-+|.|+.+.++|||+|.++|..||||.|||+.+
T Consensus       425 kVv~iydy~~~KddeLsf~E~ailyv~kknddgw~EgV~~~VTglFpgnyve~~  478 (483)
T KOG2546|consen  425 KVVAIYDYTADKDDELSFAEGAILYVLKKNDDGWYEGVQDGVTGLFPGNYVEPL  478 (483)
T ss_pred             HHHhhcccccccccccccccccEEEEEEecCCcchhheecCcceeccCcccccc
Confidence            578999999999999999999999999999999999999999999999999876

>KOG4226|consensus

Probab=97.88  E-value=6.7e-06  Score=83.90  Aligned_cols=56  Identities=36%  Similarity=0.729  Sum_probs=50.7

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEee--cCCeEEEE-ECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMI--DEGWWRGY-CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~--DeGWW~Gr-~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+..+.||+|.+|+.+.|++..  |+.||.++ ..|..|++|.|||..+
T Consensus       191 l~vVvaLYsFsssndeELsFeKGerleivd~Pe~DPdWwkarn~~G~vGLVPrNYv~vl  249 (379)
T KOG4226|consen  191 LHVVVALYSFSSSNDEELSFEKGERLEIVDKPENDPDWWKARNARGQVGLVPRNYVVVL  249 (379)
T ss_pred             EEEEEEEecccCCChhhcccccCceeEeccCCCCCchHHhhcccCCccceeecceEEEe
Confidence            34678999999999999999999999999864  78999999 7999999999999876

>KOG1702|consensus

Probab=97.83  E-value=1.4e-05  Score=78.74  Aligned_cols=57  Identities=44%  Similarity=0.784  Sum_probs=52.2

Q ss_pred             CccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEE--ECCeeeeecCCCeeec
Q psy194          468 LGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY--CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       468 ~g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr--~~Gr~G~FPSnYVE~L  524 (525)
                      .+.+.+|+|||.++..++++|.-||.|..+..+++||..|+  ..|..|.+|+|||+.+
T Consensus       206 ~gktyra~ydysaqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~v  264 (264)
T KOG1702|consen  206 TGKTYRAFYDYSAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEFV  264 (264)
T ss_pred             CCccchhhccCcccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheeeC
Confidence            35678999999999999999999999999999999999998  4899999999999864

>KOG0515|consensus

Probab=97.77  E-value=9.7e-06  Score=88.47  Aligned_cols=53  Identities=42%  Similarity=0.764  Sum_probs=48.1

Q ss_pred             EEEEeccCCCCCCCCcccCCCCeEEEEEeec---CCeEEEEECCeeeeecCCCeee
Q psy194          471 TAVALYDYQASADDEISFDPDDIITNIEMID---EGWWRGYCHGQYGLFPANYVSL  523 (525)
Q Consensus       471 ~AvALYDYqAqsedELSFskGDIItVLek~D---eGWW~Gr~~Gr~G~FPSnYVE~  523 (525)
                      .+.|||||.++..+||+|+.||.++||...+   -.||+++++|..|++|.||+-+
T Consensus       685 ~vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~lng~eGyVPRnylgL  740 (752)
T KOG0515|consen  685 VVYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWARLNGEEGYVPRNYLGL  740 (752)
T ss_pred             eeEEeecccccccccccccCCceeEEEecCCcchhhhhhHhhcCcccccchhhhhc
Confidence            4789999999999999999999999999854   3799999999999999999754

>KOG1843|consensus

Probab=97.75  E-value=1.2e-05  Score=85.56  Aligned_cols=55  Identities=44%  Similarity=0.814  Sum_probs=50.6

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeec--CCeEEEEECCeeeeecCCCeee
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMID--EGWWRGYCHGQYGLFPANYVSL  523 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~D--eGWW~Gr~~Gr~G~FPSnYVE~  523 (525)
                      +..++++|+|.++..++|+|++||||+++.+.+  ..||+|+.++..|+||+|||++
T Consensus       416 ~n~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr~~~~egifPanyv~~  472 (473)
T KOG1843|consen  416 PNIATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGRGNGYEGIFPANYVSL  472 (473)
T ss_pred             cceeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhhccccccccccceecc
Confidence            347899999999999999999999999998875  5899999999999999999975

>KOG4792|consensus

Probab=97.61  E-value=1.7e-05  Score=79.32  Aligned_cols=56  Identities=23%  Similarity=0.611  Sum_probs=51.5

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEE-ECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr-~~Gr~G~FPSnYVE~L  524 (525)
                      ...+.++|+|.+....+|.|++|+++.|+.+....||..+ ..|+.|++|.+||+..
T Consensus       124 ~~~vr~~fdF~G~deeDLPFkkGeiL~I~~K~eeqWW~Arns~Gk~GmIPvpYVe~~  180 (293)
T KOG4792|consen  124 AEYVRALFDFNGNDEEDLPFKKGEILRIRDKPEEQWWNARNSEGKRGMIPVPYVEKY  180 (293)
T ss_pred             hhheeeeeccCCCccccCCcccCcEEEEecCcHHHhhhhhccCCcccceechHHHhh
Confidence            3467889999999999999999999999999999999999 8999999999999753

>KOG3875|consensus

Probab=97.59  E-value=9.1e-06  Score=83.93  Aligned_cols=58  Identities=33%  Similarity=0.397  Sum_probs=49.2

Q ss_pred             CCccEEEEeccCCCCCCCCcccCCCCeEEEEEeec-----CCeEEEE-E-CCeeeeecCCCeeec
Q psy194          467 DLGYTAVALYDYQASADDEISFDPDDIITNIEMID-----EGWWRGY-C-HGQYGLFPANYVSLQ  524 (525)
Q Consensus       467 ~~g~~AvALYDYqAqsedELSFskGDIItVLek~D-----eGWW~Gr-~-~Gr~G~FPSnYVE~L  524 (525)
                      ++..+|+|+|||.+.++.||+|++||+|.|+.+.+     +.||... . .+..||||.|||+++
T Consensus       266 dp~~~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi  330 (362)
T KOG3875|consen  266 DPHEFARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKII  330 (362)
T ss_pred             ChHHHHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhh
Confidence            34578999999999999999999999999886643     4577776 5 678899999999987

>KOG3601|consensus

Probab=97.54  E-value=3.7e-05  Score=75.91  Aligned_cols=54  Identities=33%  Similarity=0.669  Sum_probs=50.9

Q ss_pred             cEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeee
Q psy194          470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL  523 (525)
Q Consensus       470 ~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~  523 (525)
                      ..+.++|+|+++.+.+|.|..|++|.|+...+..||.|.+.|+.|+||++||..
T Consensus       164 ~yqQa~~df~~~pp~ql~f~~gq~~~v~~~ss~~ww~Gs~lg~agiFpagyv~p  217 (222)
T KOG3601|consen  164 YYQQALYDFQPQPPGQLAFRRGQQIQVLDSSSPFWWFGSKLGRAGIFPAGYVAP  217 (222)
T ss_pred             hhhhhcCCCCCCCchhhccccCCcceeecCCCcchhhccccCceeeecCccccc
Confidence            467899999999999999999999999999999999999999999999999864

>KOG2222|consensus

Probab=97.20  E-value=5.6e-05  Score=81.97  Aligned_cols=54  Identities=44%  Similarity=0.681  Sum_probs=51.0

Q ss_pred             EEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       471 ~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      .++||.||....+++|.|++.|+|+||..-++-+|.|+++|.+||||+-||+.+
T Consensus       550 rakal~df~r~dddelgfrkndiitiisekdehcwvgelnglrgwfpakfvell  603 (848)
T KOG2222|consen  550 RAKALHDFAREDDDELGFRKNDIITIISEKDEHCWVGELNGLRGWFPAKFVELL  603 (848)
T ss_pred             HHHHHhhhhhccccccccccccEEEEeecCCcceeeeccccccccchHHHHHHH
Confidence            578999999999999999999999999999999999999999999999998765

>KOG3523|consensus

Probab=96.79  E-value=0.00017  Score=79.93  Aligned_cols=55  Identities=25%  Similarity=0.568  Sum_probs=50.5

Q ss_pred             cEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEE--ECCeeeeecCCCeeec
Q psy194          470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY--CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       470 ~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr--~~Gr~G~FPSnYVE~L  524 (525)
                      ..+.+...|.+..+++|++..+|++.|+.+.++||+.|.  .+|-.||||..|++.|
T Consensus       609 pQv~~~~sy~a~q~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~veeI  665 (695)
T KOG3523|consen  609 PQVQCVHSYKAKQPDELTLELADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEEI  665 (695)
T ss_pred             ChhheeeccccCCCceeeeehhhhhhhhhcCCCccccccccccCccCcchHHHHHHh
Confidence            456788899999999999999999999999999999999  5899999999999865

>KOG4278|consensus

Probab=96.68  E-value=0.0014  Score=73.88  Aligned_cols=54  Identities=30%  Similarity=0.532  Sum_probs=46.1

Q ss_pred             cEEEEeccCCCCCCCCcccCCCCeEEEEEeecC-CeEEEE-ECCeeeeecCCCeeec
Q psy194          470 YTAVALYDYQASADDEISFDPDDIITNIEMIDE-GWWRGY-CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       470 ~~AvALYDYqAqsedELSFskGDIItVLek~De-GWW~Gr-~~Gr~G~FPSnYVE~L  524 (525)
                      ..++|||||.+.++..|++.+|+.+.||.-..+ .|+..+ .+|. ||+|+||+..+
T Consensus        91 NLFVALYDFvasGdntLSitKGeklRvLGYN~NgEWcEartKNGq-GWVPSNyItPv  146 (1157)
T KOG4278|consen   91 NLFVALYDFVASGDNTLSITKGEKLRVLGYNKNGEWCEARTKNGQ-GWVPSNYITPV  146 (1157)
T ss_pred             ceeEeeeeeeccccceeeeecCceEEEeeecCCCcceeecccCCC-ccccccccccc
Confidence            368999999999999999999999999987644 577777 4566 99999998764

>KOG3632|consensus

Probab=96.65  E-value=0.0014  Score=75.89  Aligned_cols=55  Identities=33%  Similarity=0.575  Sum_probs=47.3

Q ss_pred             cEEEEeccCCCCC--------CCCcccCCCCeEEEEEe-ecCCeEEEEECCeeeeecCCCeeec
Q psy194          470 YTAVALYDYQASA--------DDEISFDPDDIITNIEM-IDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       470 ~~AvALYDYqAqs--------edELSFskGDIItVLek-~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ..++|||||++..        ..||+|+.|+||.|+.. +-+|++.|+++|+.|+||+|+|.++
T Consensus      1139 rifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~ngr~GlIPcNmvae~ 1202 (1335)
T KOG3632|consen 1139 RIFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGELNGRRGLIPCNMVAEQ 1202 (1335)
T ss_pred             eeeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeecccccccccccccccccc
Confidence            4679999999643        56899999999999864 4579999999999999999999765

>KOG1451|consensus

Probab=96.01  E-value=0.0064  Score=67.80  Aligned_cols=55  Identities=36%  Similarity=0.668  Sum_probs=48.7

Q ss_pred             cEEEEeccCCCCCCCCcccCCCCeEEEEE-eecCCeEEEEECCeeeeecCCCeeec
Q psy194          470 YTAVALYDYQASADDEISFDPDDIITNIE-MIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       470 ~~AvALYDYqAqsedELSFskGDIItVLe-k~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ..+.+||...+....+|+|.+|.+++.+. ...+||..|+++|+.|++|+|||+.|
T Consensus       757 rk~k~lyAc~a~h~selsf~~gt~f~nv~~S~e~Gwl~GtLnGktglip~nyve~l  812 (812)
T KOG1451|consen  757 RRVKTLYACTADHHSELSFEPGTIFTNVYESNEDGWLVGTLNGKTGLIPSNYVEPL  812 (812)
T ss_pred             ccccceeccCCCCcccccccCcceeeeecccCCCCceeeecCCCcccCcccccCcC
Confidence            35678899999999999999999998776 45689999999999999999999875

>KOG4773|consensus

Probab=95.94  E-value=0.0011  Score=69.77  Aligned_cols=54  Identities=20%  Similarity=0.391  Sum_probs=50.3

Q ss_pred             EEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       471 ~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      .+.++++|.+....+|.|..|+++.++..++.+||.|...+.+||||.+|++.+
T Consensus       177 ~~~a~~df~gns~~EL~l~agdV~~~~~r~ek~W~~gk~R~~~g~yp~sF~~~l  230 (386)
T KOG4773|consen  177 RAEASFDFPGNSKLELNLVAGDVEFLLSRDEKYWLLGKVRGLTGYYPDSFVKQL  230 (386)
T ss_pred             HHHhhccCCCCccceeeeehhhHHHHHhhcccceeeeeeccccccccHHhhhhh
Confidence            567899999999999999999999999999999999999999999999998765

>KOG4429|consensus

Probab=95.46  E-value=0.0041  Score=64.57  Aligned_cols=55  Identities=27%  Similarity=0.241  Sum_probs=50.7

Q ss_pred             cEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       470 ~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      +.|.++|+|++..+++|...+|+++++-+...+|||-|++.|..|-||+.||+.+
T Consensus       364 ~lcdafYSfqarqddel~~e~gditif~Ekkeeg~~f~rl~gd~~hf~Aa~iEea  418 (421)
T KOG4429|consen  364 ILCDAFYSFQARQDDELGGEIGDITIFDEKKEEGPTFCRLLGDFEHFHAAEIEEA  418 (421)
T ss_pred             HHhhhhhccccccccccCCcccceeeecCcccCCCceeeeccccCCCcHHHHHHh
Confidence            4688999999999999999999999888888999999999999999999998764

>KOG4792|consensus

Probab=95.24  E-value=0.03  Score=56.60  Aligned_cols=56  Identities=21%  Similarity=0.342  Sum_probs=47.5

Q ss_pred             ccEEEEeccCCCCC--CCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASA--DDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqs--edELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++++.+-.+..  ...|.+.+|++|.|..+..+|-|.|+|+|+.|.||-+||+.+
T Consensus       227 Pa~Arv~q~RVPnAYDkTaL~levGdiVkVTk~ninGqwegElnGk~G~fPfThvrf~  284 (293)
T KOG4792|consen  227 PAYARVIQKRVPNAYDKTALALEVGDIVKVTKKNINGQWEGELNGKIGHFPFTHVRFT  284 (293)
T ss_pred             ChheeeehhcCCCccChhhhhhhcCcEEEEEeeccCceeeeeecCccccccceeEEee
Confidence            34677777766554  456999999999999999999999999999999999999764

>KOG3725|consensus

Probab=95.16  E-value=0.0054  Score=62.78  Aligned_cols=56  Identities=34%  Similarity=0.570  Sum_probs=50.6

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEe--ecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEM--IDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek--~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...+++||||.+....+|++-.+++|+|...  .|..|..|+..++.|-+|-+|++.|
T Consensus       317 trkArVlyDYdAa~s~ElslladeiitVyslpGMD~dwlmgErGnkkGKvPvtYlELL  374 (375)
T KOG3725|consen  317 TRKARVLYDYDAALSQELSLLADEIITVYSLPGMDADWLMGERGNKKGKVPVTYLELL  374 (375)
T ss_pred             ccceeeeecccccchhhhhhhhcceEEEEecCCCChHHhhhhhcCCCCCcchhHHHhc
Confidence            4578999999999999999999999999875  4678999999999999999999876

>KOG0609|consensus

Probab=95.12  E-value=0.0075  Score=66.55  Aligned_cols=54  Identities=30%  Similarity=0.591  Sum_probs=45.3

Q ss_pred             ccEEEEeccCCCCCCC-------CcccCCCCeEEEEEeecCCeEEEEE-----CCeeeeecCCCee
Q psy194          469 GYTAVALYDYQASADD-------EISFDPDDIITNIEMIDEGWWRGYC-----HGQYGLFPANYVS  522 (525)
Q Consensus       469 g~~AvALYDYqAqsed-------ELSFskGDIItVLek~DeGWW~Gr~-----~Gr~G~FPSnYVE  522 (525)
                      .++++|+|||++..++       .|+|.+|||+-|+...|..||.+..     .+..|++|+....
T Consensus       214 ~~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~q  279 (542)
T KOG0609|consen  214 VVFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQ  279 (542)
T ss_pred             eeeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHH
Confidence            3678999999988755       4999999999999999999999873     2678999986543

>KOG3771|consensus

Probab=94.72  E-value=0.018  Score=62.77  Aligned_cols=54  Identities=30%  Similarity=0.286  Sum_probs=43.1

Q ss_pred             CccEEEEeccCCCCCCCCcccCCCCeEEEEEee-cCCeEEEEECCeeeeecCCCe
Q psy194          468 LGYTAVALYDYQASADDEISFDPDDIITNIEMI-DEGWWRGYCHGQYGLFPANYV  521 (525)
Q Consensus       468 ~g~~AvALYDYqAqsedELSFskGDIItVLek~-DeGWW~Gr~~Gr~G~FPSnYV  521 (525)
                      ....+.++|+|.+...++|+|..|++|.|+... .+.||.|++.|..+-+|.+|+
T Consensus       399 ~~~~v~a~~dy~a~~~deLsf~~gd~i~vi~s~~~~e~~eg~~mg~ke~~~~~~~  453 (460)
T KOG3771|consen  399 FLYKVKALHDYAAQDTDELSFEAGDVILVIPSDNPEEQDEGWLMGVKESDWNGLF  453 (460)
T ss_pred             CccceeccccccccccccccccCCCEEEEecCCCccchhhHHHhhhcccccccce
Confidence            356789999999999999999999999999854 357888887666555555554

>KOG3557|consensus

Probab=94.19  E-value=0.013  Score=65.78  Aligned_cols=55  Identities=27%  Similarity=0.584  Sum_probs=47.9

Q ss_pred             cEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEE-ECCeeeeecCCCeeecC
Q psy194          470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYVSLQQ  525 (525)
Q Consensus       470 ~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr-~~Gr~G~FPSnYVE~LQ  525 (525)
                      ..+.++|||.+....+|++.+|+++.||.. ..+||.++ -.|+.|++|+|.+..++
T Consensus       501 k~~~~~Ydf~arNs~ELsV~k~E~LEvl~d-~R~WW~~kn~~G~~GyvP~nIL~~~~  556 (721)
T KOG3557|consen  501 KWVLVLYDFQARNSSELSVKKGEVLEVLDD-GRKWWKVKNGHGRAGYVPSNILAPLQ  556 (721)
T ss_pred             eeeeeehhhhcccchhhhhhhhhhhhhhhc-cccceeccCccCCCCCcchhhhccCC
Confidence            378899999999999999999999988763 35899998 68999999999887664

>KOG0197|consensus

Probab=94.11  E-value=0.019  Score=62.95  Aligned_cols=55  Identities=36%  Similarity=0.755  Sum_probs=48.1

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCe-EEEEEeecCCeEEEEE--CCeeeeecCCCeee
Q psy194          469 GYTAVALYDYQASADDEISFDPDDI-ITNIEMIDEGWWRGYC--HGQYGLFPANYVSL  523 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDI-ItVLek~DeGWW~Gr~--~Gr~G~FPSnYVE~  523 (525)
                      ...++|+|+|.+..+.+|+|.+|++ ..++...+..||..++  .+..|++|+|||..
T Consensus        11 ~~~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~   68 (468)
T KOG0197|consen   11 ETIVVALYDYASRTPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVAR   68 (468)
T ss_pred             cceEEEeccccCCCccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeec
Confidence            3578999999999999999999999 6677777789999873  68999999999964

>KOG4575|consensus

Probab=93.52  E-value=0.084  Score=59.65  Aligned_cols=56  Identities=27%  Similarity=0.584  Sum_probs=45.2

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEE--CCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC--HGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~--~Gr~G~FPSnYVE~L  524 (525)
                      ...++|+|.+.++..++|.|..||+|.++...+.-||-+.+  ....|+||+|||-.|
T Consensus         8 p~~vrA~y~w~ge~eGdl~f~egDlie~trI~dgkwwi~lhrNk~~~g~fpsNFvhcL   65 (874)
T KOG4575|consen    8 PCMVRALYAWPGEREGDLKFTEGDLIEQTRIEDGKWWILLHRNKDEDGLFPSNFVHCL   65 (874)
T ss_pred             CceEEeeccCCCCcccccceecccceeEEeeccceeeeeeeecccccccCcccceeec
Confidence            35689999999999999999999999998876655555553  456799999999543

>KOG3775|consensus

Probab=92.39  E-value=0.069  Score=57.26  Aligned_cols=54  Identities=26%  Similarity=0.527  Sum_probs=47.8

Q ss_pred             EEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEE--ECCeeeeecCCCeeec
Q psy194          471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY--CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       471 ~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr--~~Gr~G~FPSnYVE~L  524 (525)
                      +-++++.|.+.-++||.|.+||-|.|-...++-|.+|.  ..|..|+||+.|+-.+
T Consensus       264 THR~~~rFvPRHpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~ev  319 (482)
T KOG3775|consen  264 THRAVFRFVPRHPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEV  319 (482)
T ss_pred             hhhhhhhccCCCcceeeeecCCeeEeeecccchhhccccccccccccccceeEEec
Confidence            45678899999999999999999988888888999998  6899999999998654

>KOG3565|consensus

Probab=91.18  E-value=0.057  Score=61.32  Aligned_cols=56  Identities=34%  Similarity=0.662  Sum_probs=50.5

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEee-cCCeEEEE--ECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMI-DEGWWRGY--CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~-DeGWW~Gr--~~Gr~G~FPSnYVE~L  524 (525)
                      ..++.++|.|.+.+++++++.+|+++.+|+.+ .+||-+++  +++..|+||.+|+..+
T Consensus       578 ~~~~~a~~~~~~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~  636 (640)
T KOG3565|consen  578 IRTSKALYAFEGQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDVT  636 (640)
T ss_pred             ccceecccCcCCCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCccccccc
Confidence            56889999999999999999999999998865 67999998  8899999999999764

>KOG3632|consensus

Probab=89.85  E-value=0.38  Score=56.85  Aligned_cols=56  Identities=23%  Similarity=0.447  Sum_probs=46.9

Q ss_pred             ccEEEEeccCCC------CCCCCcccCCCCeEEEEEe-ecCCeEEEE-ECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQA------SADDEISFDPDDIITNIEM-IDEGWWRGY-CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqA------qsedELSFskGDIItVLek-~DeGWW~Gr-~~Gr~G~FPSnYVE~L  524 (525)
                      ...+.|+|+|.+      .-+.+|.+..|++|.|... ..+|++.|. .+|+.|++|+|||+.+
T Consensus       447 ~q~~~arySynPFegpNenpeaelpltAg~yiYiyGdmdEdgfyegeL~dgrrglvPsnFVe~v  510 (1335)
T KOG3632|consen  447 AQPFTARYSYNPFEGPNENPEAELPLTAGYYIYIYGDMDEDGFYEGELRDGRRGLVPSNFVEVV  510 (1335)
T ss_pred             cceEEEEEeccCCcCCCCCCccccccccceEEEEecCCCccccceeeeecccccCCCchheEEe
Confidence            446889999987      2356899999999998864 457999999 6899999999999876

>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A

Probab=88.07  E-value=0.59  Score=41.08  Aligned_cols=41  Identities=17%  Similarity=0.362  Sum_probs=30.0

Q ss_pred             CCCCcccCCCCeEEEEEeecCCeEEEE-ECCeeeeecCCCee
Q psy194          482 ADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYVS  522 (525)
Q Consensus       482 sedELSFskGDIItVLek~DeGWW~Gr-~~Gr~G~FPSnYVE  522 (525)
                      +..+|.+.+|+++.||+..+.+-|.|+ ..|+.|++|.+++-
T Consensus        29 G~kDLpi~~GE~LeVI~~t~~~kvlCRN~~GKYGYV~~~~L~   70 (89)
T PF14603_consen   29 GGKDLPIKPGEILEVIQFTDDNKVLCRNSEGKYGYVLRSHLL   70 (89)
T ss_dssp             -TTB----TT-B-EEEEESSSSEEEEEETTTEEEEEEGGGS-
T ss_pred             CcccCCcCCCCEEEEEEeCCCCeEEEeCCCCceeEEEHHHcc
Confidence            467899999999999999999988888 79999999988874

>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=86.06  E-value=1.7  Score=33.02  Aligned_cols=37  Identities=19%  Similarity=0.453  Sum_probs=30.3

Q ss_pred             cccCCCCeEEEEEeecCC-eEEE-EECCeeeeecCCCee
Q psy194          486 ISFDPDDIITNIEMIDEG-WWRG-YCHGQYGLFPANYVS  522 (525)
Q Consensus       486 LSFskGDIItVLek~DeG-WW~G-r~~Gr~G~FPSnYVE  522 (525)
                      -.+..|+.|.++.....+ |+.. ..+|..||+++.||+
T Consensus        17 ~~l~~g~~v~v~~~~~~~~W~~V~~~~g~~GwV~~~~l~   55 (55)
T PF08239_consen   17 GQLPKGEKVTVLGESGDGNWYKVRTYDGKTGWVSSSYLS   55 (55)
T ss_dssp             EEEETTSEEEEEEEETT--EEEEEEETTEEEEEEGGCEE
T ss_pred             EEEeCCCEEEEEEEcCCcEEEEEECcCCcEEEEEccccC
Confidence            456789999999877655 9999 489999999999985

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.

>KOG0199|consensus

Probab=85.17  E-value=0.77  Score=53.30  Aligned_cols=50  Identities=24%  Similarity=0.302  Sum_probs=39.8

Q ss_pred             EEEEeccCCCCCCCCcccCCCCeEEEEEeec-CCeEEEE--ECCeeeeecCCCee
Q psy194          471 TAVALYDYQASADDEISFDPDDIITNIEMID-EGWWRGY--CHGQYGLFPANYVS  522 (525)
Q Consensus       471 ~AvALYDYqAqsedELSFskGDIItVLek~D-eGWW~Gr--~~Gr~G~FPSnYVE  522 (525)
                      .++++|  .....+.|-|.+||.|+||+... .-||.|.  .+++.|.||.+-|.
T Consensus       378 ~a~~~~--d~~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt  430 (1039)
T KOG0199|consen  378 VARETY--DSIEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVT  430 (1039)
T ss_pred             eeeeec--cccCCCceeeccCCeEEEEecCCccceeeccccccceecccCcceee
Confidence            344444  45668999999999999999765 4699996  68999999987765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	525
1x69_A	79	Solution Structures Of The Sh3 Domain Of Human Src		1e-26
2d1x_A	66	The Crystal Structure Of The Cortactin-Sh3 Domain A		9e-25
3ulr_B	65	Lysozyme Contamination Facilitates Crystallization		4e-24
2bz8_A	58	N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Pepti		2e-08
3jv3_A	283	Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l		4e-08
1jo8_A	58	Structural Analysis Of The Yeast Actin Binding Prot		4e-08
2rpn_A	59	A Crucial Role For High Intrinsic Specificity In Th		4e-08
3iql_A	71	Crystal Structure Of The Rat Endophilin-A1 Sh3 Doma		6e-08
3gf9_A	295	Crystal Structure Of Human Intersectin 2 Rhogef Dom		1e-07
1gri_A	217	Grb2 Length = 217		2e-07
2k3b_A	62	Seeing The Invisible: Structures Of Excited Protein		2e-07
2dbm_A	73	Solution Structures Of The Sh3 Domain Of Human Sh3-		2e-07
2vvk_A	56	Grb2 Sh3c (1) Length = 56		3e-07
2l0a_A	72	Solution Nmr Structure Of Signal Transducing Adapte		3e-07
1oeb_A	62	MonaGADS SH3C DOMAIN Length = 62		3e-07
1uti_A	58	MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE L		4e-07
1gcq_A	61	Crystal Structure Of Vav And Grb2 Sh3 Domains Lengt		4e-07
2vwf_A	58	Grb2 Sh3c (2) Length = 58		4e-07
1h3h_A	60	Structural Basis For Specific Recognition Of An Rxx		4e-07
1io6_A	59	Growth Factor Receptor-Bound Protein 2 (Grb2) C-Ter		5e-07
3c0c_A	73	X-Ray Crystal Structure Of The Rat Endophilin A2 Sh		5e-07
2d0n_A	59	Crystal Structure Of The C-Terminal Sh3 Domain Of T		6e-07
1ark_A	60	Sh3 Domain From Human Nebulin, Nmr, 15 Structures L		6e-07
2yun_A	79	Solution Structure Of The Sh3 Domain Of Human Nostr		7e-07
1udl_A	98	The Solution Structure Of The Fifth Sh3 Domain Of I		9e-07
2xmf_A	60	Myosin 1e Sh3 Length = 60		9e-07
2ew3_A	68	Solution Structure Of The Sh3 Domain Of Human Sh3gl		1e-06
1ywo_A	64	Phospholipase Cgamma1 Sh3 In Complex With A Slp-76		1e-06
1y0m_A	61	Crystal Structure Of Of The Sh3 Domain Of Phospholi		1e-06
3i35_A	60	Human Sh3 Domain Of Protein Lasp1 Length = 60		2e-06
1x2k_A	68	Solution Structure Of The Sh3 Domain Of Human Osteo		2e-06
2ed0_A	78	Solution Structure Of The Sh3 Domain Of Abl Interac		2e-06
2o2o_A	92	Solution Structure Of Domain B From Human Cin85 Pro		2e-06
2a28_A	54	Atomic-Resolution Crystal Structure Of The Second S		3e-06
4f14_A	64	Structure Of The Sh3 Domain Of Human Nebulette In C		3e-06
2dl4_A	68	Solution Structure Of The First Sh3 Domain Of Stac		3e-06
1zlm_A	58	Crystal Structure Of The Sh3 Domain Of Human Osteoc		4e-06
2krn_A	60	High Resolution Structure Of The Second Sh3 Domain		4e-06
3haj_A	486	Crystal Structure Of Human Pacsin2 F-Bar Domain (P2		4e-06
1uj0_A	62	Crystal Structure Of Stam2 Sh3 Domain In Complex Wi		4e-06
1x2q_A	88	Solution Structure Of The Sh3 Domain Of The Signal		5e-06
2k9g_A	73	Solution Structure Of The Third Sh3 Domain Of The C		5e-06
2ydl_A	69	Crystal Structure Of Sh3c From Cin85 Length = 69		6e-06
4gbq_A	74	Solution Nmr Structure Of The Grb2 N-Terminal Sh3 D		8e-06
2cub_A	88	Solution Structure Of The Sh3 Domain Of The Human C		8e-06
2da9_A	70	Solution Structure Of The Third Sh3 Domain Of Sh3-D		8e-06
2df6_A	59	Crystal Structure Of The Sh3 Domain Of Betapix In C		8e-06
1hsq_A	71	Solution Structure Of The Sh3 Domain Of Phospholipa		8e-06
2k6d_A	62	Cin85 Sh3-C Domain In Complex With Ubiquitin Length		1e-05
1zsg_A	65	Beta Pix-Sh3 Complexed With An Atypical Peptide Fro		1e-05
4iim_A	70	Crystal Structure Of The Second Sh3 Domain Of Itsn1		2e-05
1wi7_A	68	Solution Structure Of The Sh3 Domain Of Sh3-Domain		2e-05
2a36_A	59	Solution Structure Of The N-Terminal Sh3 Domain Of		2e-05
2a08_A	60	Structure Of The Yeast Yhh6 Sh3 Domain Length = 60		2e-05
2ak5_A	64	Beta Pix-Sh3 Complexed With A Cbl-B Peptide Length		3e-05
2yuo_A	78	Solution Structure Of The Sh3 Domain Of Mouse Run A		3e-05
2a37_A	59	Solution Structure Of The T22g Mutant Of N-Terminal		3e-05
2js0_A	61	Solution Structure Of Second Sh3 Domain Of Adaptor		3e-05
2x3w_D	60	Structure Of Mouse Syndapin I (Crystal Form 2) Leng		3e-05
2esw_A	61	Atomic Structure Of The N-Terminal Sh3 Domain Of Mo		4e-05
2frw_A	57	Solution Structure Of The Second Sh3 Domain Of Huma		5e-05
1ynz_A	58	Sh3 Domain Of Yeast Pin3 Length = 58		5e-05
2dlm_A	68	Solution Structure Of The First Sh3 Domain Of Human		5e-05
1k76_A	62	Solution Structure Of The C-Terminal Sem-5 Sh3 Doma		6e-05
2cre_A	71	Solution Structure Of Rsgi Ruh-036, An Sh3 Domain F		6e-05
4e6r_A	58	Crystal Structure Of A Cytoplasmic Protein Nck2 (Nc		6e-05
1oot_A	60	Crystal Structure Of The Sh3 Domain From A S. Cerev		6e-05
2d8h_A	80	Solution Structure Of The Sh3 Domain Of Hypothetica		7e-05
2kbt_A	142	Attachment Of An Nmr-Invisible Solubility Enhanceme		9e-05
4esr_A	69	Molecular And Structural Characterization Of The Sh		9e-05
2nwm_A	65	Solution Structure Of The First Sh3 Domain Of Human		9e-05
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		9e-05
1aze_A	56	Nmr Structure Of The Complex Between The C32s-Y7v M		9e-05
2drk_A	59	Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 L		9e-05
2drm_A	58	Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 L		1e-04
1sem_A	58	Structural Determinants Of Peptide-Binding Orientat		1e-04
2fei_A	65	Solution Structure Of The Second Sh3 Domain Of Huma		1e-04
1uue_A	62	A-Spectrin Sh3 Domain (V44t, D48g Mutant) Length =		1e-04
3sem_A	60	Sem5 Sh3 Domain Complexed With Peptoid Inhibitor Le		1e-04
1j3t_A	74	Solution Structure Of The Second Sh3 Domain Of Huma		1e-04
3u23_A	65	Atomic Resolution Crystal Structure Of The 2nd Sh3		2e-04
1bk2_A	57	A-Spectrin Sh3 Domain D48g Mutant Length = 57		2e-04
2eqi_A	69	Solution Structure Of The Sh3 Domain From Phospholi		2e-04
1ujy_A	76	Solution Structure Of Sh3 Domain In RacCDC42 GUANIN		2e-04
2dl3_A	68	Solution Structure Of The First Sh3 Domain Of Human		3e-04
4glm_A	72	Crystal Structure Of The Sh3 Domain Of Dnmbp Protei		3e-04
3m0p_A	62	Crystal Structure Of The R21d Mutant Of Alpha-Spect		3e-04
3m0s_A	57	Crystal Structure Of The R21d Mutant Of Alpha-Spect		4e-04
3i9q_A	57	Crystal Structure Of The Triple Mutant S19g-P20d-R2		4e-04
1wyx_A	69	The Crystal Structure Of The P130cas Sh3 Domain At		4e-04
1uff_A	93	Solution Structure Of The First Sh3 Domain Of Human		5e-04
2m0y_A	74	Solution Structure Of The Sh3 Domain Of Dock180 Len		5e-04
1wxu_A	93	Solution Structure Of The Sh3 Domain Of Mouse Perox		5e-04
2lj1_A	64	The Third Sh3 Domain Of R85fl With Ataxin-7 Prr Len		8e-04
2cdt_A	62	Alpha-Spectrin Sh3 Domain A56s Mutant Length = 62		9e-04

>pdb|1X69|A Chain A, Solution Structures Of The Sh3 Domain Of Human Src Substrate Cortactin Length = 79

Iteration: 1
 Score =  117 bits (294), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 53/67 (79%), Positives = 59/67 (88%)
Query: 459 GTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPA 518
           GT ++ E DLG TAVALYDYQA+ DDEISFDPDDIITNIEMID+GWWRG C G+YGLFPA
Sbjct: 7   GTYDEYENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPA 66
Query: 519 NYVSLQQ 525
           NYV L+Q
Sbjct: 67  NYVELRQ 73

>pdb|2D1X|A Chain A, The Crystal Structure Of The Cortactin-Sh3 Domain And Amap1- Peptide Complex Length = 66

Iteration: 1
 Score =  111 bits (278), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 51/62 (82%), Positives = 56/62 (90%)
Query: 464 TEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           +E DLG TAVALYDYQA+ DDEISFDPDDIITNIEMID+GWWRG C G+YGLFPANYV L
Sbjct: 5   SENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVEL 64
Query: 524 QQ 525
           +Q
Sbjct: 65  RQ 66

>pdb|3ULR|B Chain B, Lysozyme Contamination Facilitates Crystallization Of A Hetero- Trimericcortactin:arg:lysozyme Complex Length = 65

Iteration: 1
 Score =  109 bits (273), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 49/59 (83%), Positives = 54/59 (91%)
Query: 467 DLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQQ 525
           DLG TA+ALYDYQA+ DDEISFDPDDIITNIEMID+GWWRG C G+YGLFPANYV L+Q
Sbjct: 7   DLGITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQ 65

>pdb|2BZ8|A Chain A, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide Length = 58

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 33/50 (66%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           A+  +DYQA  DDE++    +IITNI   D GWW G  +G+ GLFP N+V
Sbjct: 4   AIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFV 53

>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l Length = 283

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 31/52 (59%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
            + +YDY A  DDE++F    II  +   D  WW+G   GQ GLFP+NYV L
Sbjct: 5   VIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKL 56

>pdb|1JO8|A Chain A, Structural Analysis Of The Yeast Actin Binding Protein Abp1 Sh3 Domain Length = 58

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYVSL 523
           A A YDY A+ D+E++F  +D I NIE +D+ WW G     G  GLFP+NYVSL
Sbjct: 3   ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSL 56

>pdb|2RPN|A Chain A, A Crucial Role For High Intrinsic Specificity In The Function Of Yeast Sh3 Domains Length = 59

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYVSL 523
           A A YDY A+ D+E++F  +D I NIE +D+ WW G     G  GLFP+NYVSL
Sbjct: 4   ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSL 57

>pdb|3IQL|A Chain A, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain Length = 71

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 30/50 (60%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           ALYD++   + E+ F   DIIT    IDE W+ G  HGQ G FP NYV +
Sbjct: 16  ALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGQSGFFPINYVEI 65

>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain Length = 295

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           G   +A+YDY A+ +DE+SF    +I  +   D  WW+G  +G  GLFP+NYV +
Sbjct: 18  GCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKM 72

>pdb|1GRI|A Chain A, Grb2 Length = 217

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 472 AVALYDYQASADDEISFDPDDIITNI-EMIDEGWWRGYCHGQYGLFPANYVSLQ 524
           A+A YD++A+ADDE+SF   DI+  + E  D+ W++   +G+ G  P NY+ ++
Sbjct: 3   AIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMK 56

>pdb|2K3B|A Chain A, Seeing The Invisible: Structures Of Excited Protein States By Relaxation Dispersion Nmr Length = 62

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/54 (51%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYVSL 523
           A A YDY A+ D+E++F  +D I NIE +D+ WW G     G  GLFP+NYVSL
Sbjct: 7   ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSL 60

>pdb|2DBM|A Chain A, Solution Structures Of The Sh3 Domain Of Human Sh3- Containing Grb2-Like Protein 2 Length = 73

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 29/50 (58%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           ALYD++   + E+ F   DIIT    IDE W+ G  HG  G FP NYV +
Sbjct: 12  ALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEI 61

>pdb|2VVK|A Chain A, Grb2 Sh3c (1) Length = 56

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS 522
           AL+D+    D E+ F   D I  ++  D  WW+G CHGQ G+FP NYV+
Sbjct: 5   ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVT 53

>pdb|2L0A|A Chain A, Solution Nmr Structure Of Signal Transducing Adapter Molecule 1 Stam-1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4479e Length = 72

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 35/49 (71%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS 522
           A+YD++A+ D+E++F   +IIT ++  D  WW+G  H   GLFP+N+V+
Sbjct: 22  AIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFVT 70

>pdb|1OEB|A Chain A, MonaGADS SH3C DOMAIN Length = 62

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 33/51 (64%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS 522
           A ALYD++A  +DE+ F   +++  ++  +  WW G  H + GLFPANYV+
Sbjct: 8   ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVA 58

>pdb|1UTI|A Chain A, MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE Length = 58

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 33/51 (64%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS 522
           A ALYD++A  +DE+ F   +++  ++  +  WW G  H + GLFPANYV+
Sbjct: 4   ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVA 54

>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains Length = 61

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS 522
           AL+D+    D E+ F   D I  ++  D  WW+G CHGQ G+FP NYV+
Sbjct: 7   ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVT 55

>pdb|2VWF|A Chain A, Grb2 Sh3c (2) Length = 58

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS 522
           AL+D+    D E+ F   D I  ++  D  WW+G CHGQ G+FP NYV+
Sbjct: 7   ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVT 55

>pdb|1H3H|A Chain A, Structural Basis For Specific Recognition Of An Rxxk-Containing Slp-76 Peptide By The Gads C-Terminal Sh3 Domain Length = 60

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 33/51 (64%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS 522
           A ALYD++A  +DE+ F   +++  ++  +  WW G  H + GLFPANYV+
Sbjct: 6   ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVA 56

>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal Sh3 Domain Complexed With A Ligand Peptide (Nmr, Minimized Mean Structure) Length = 59

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS 522
           AL+D+    D E+ F   D I  ++  D  WW+G CHGQ G+FP NYV+
Sbjct: 7   ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVT 55

>pdb|3C0C|A Chain A, X-Ray Crystal Structure Of The Rat Endophilin A2 Sh3 Domain Length = 73

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 30/50 (60%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           ALYD++   D E+ F   D+IT    IDE W+ G  HGQ G FP +YV +
Sbjct: 18  ALYDFEPENDGELGFREGDLITLTNQIDENWYEGXLHGQSGFFPLSYVQV 67

>pdb|2D0N|A Chain A, Crystal Structure Of The C-Terminal Sh3 Domain Of The Adaptor Protein Gads In Complex With Slp-76 Motif Peptide Reveals A Unique Sh3-Sh3 Interaction Length = 59

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 33/51 (64%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS 522
           A ALYD++A  +DE+ F   +++  ++  +  WW G  H + GLFPANYV+
Sbjct: 5   ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVA 55

>pdb|1ARK|A Chain A, Sh3 Domain From Human Nebulin, Nmr, 15 Structures Length = 60

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/50 (50%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYV 521
           A+YDY A+  DE+SF   D I N++ IDEGW  G     G+ G+ PANYV
Sbjct: 8   AMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYV 57

>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin Length = 79

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 32/53 (60%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           G    ALY +QA  DDE++ +  DI+   E  +EGWW G  +G+ G FPA YV
Sbjct: 7   GRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYV 59

>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of Intersectin 2 (Kiaa1256) Length = 98

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
            +A+YDY A+ +DE+SF    +I  +   D  WW+G  +G  GLFP+NYV +
Sbjct: 37  VIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKM 88

>pdb|2XMF|A Chain A, Myosin 1e Sh3 Length = 60

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 31/49 (63%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS 522
           ALY Y A   DE+SF+ +DII  I+    GWW G   G+ GLFP NYV+
Sbjct: 10  ALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVT 58

>pdb|2EW3|A Chain A, Solution Structure Of The Sh3 Domain Of Human Sh3gl3 Length = 68

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 28/50 (56%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
            LYD++     E+ F   DIIT    IDE W+ G  HG+ G FP NYV +
Sbjct: 8   GLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEV 57

>pdb|1YWO|A Chain A, Phospholipase Cgamma1 Sh3 In Complex With A Slp-76 Motif Length = 64

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGL-FPANYV 521
           AL+DY+A  +DE++F    II N+E  D GWWRG   G+  L FP+NYV
Sbjct: 11  ALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYV 59

>pdb|1Y0M|A Chain A, Crystal Structure Of Of The Sh3 Domain Of Phospholipase C Gamma-1 Length = 61

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGL-FPANYV 521
           AL+DY+A  +DE++F    II N+E  D GWWRG   G+  L FP+NYV
Sbjct: 8   ALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYV 56

>pdb|3I35|A Chain A, Human Sh3 Domain Of Protein Lasp1 Length = 60

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYV 521
           A+YDY A+ +DE+SF   D I N++ ID+GW  G     G  G+ PANYV
Sbjct: 8   AVYDYSAADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYV 57

>pdb|1X2K|A Chain A, Solution Structure Of The Sh3 Domain Of Human Osteoclast Stimulating Factor 1 (Ostf1) Length = 68

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 31/52 (59%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQQ 525
           ALY ++    DE+ F+  DII   +M D  WW+G   G+ GL P+NYV+ Q 
Sbjct: 12  ALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQS 63

>pdb|2ED0|A Chain A, Solution Structure Of The Sh3 Domain Of Abl Interactor 2 (Abelson Interactor 2) Length = 78

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 31/50 (62%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
            VA+YDY    +DE+SF    II  I+  D+GW+ G  +G  GLFP NYV
Sbjct: 20  VVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYV 69

>pdb|2O2O|A Chain A, Solution Structure Of Domain B From Human Cin85 Protein Length = 92

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 459 GTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPA 518
           GTN+  E       VA + Y    DDE+     DII  +  ++EGWW G  +G+ G+FP+
Sbjct: 9   GTNKRGERRRRRCQVA-FSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPS 67
Query: 519 NYV 521
           N++
Sbjct: 68  NFI 70

>pdb|2A28|A Chain A, Atomic-Resolution Crystal Structure Of The Second Sh3 Domain Of Yeast Bzz1 Determined From A Pseudomerohedrally Twinned Crystal Length = 54

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/48 (56%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMID-EGWWRGYCHGQYGLFPANY 520
           A+Y Y+A  DDEIS DP DIIT I   D  GW  G C G  GLFP +Y
Sbjct: 5   AIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSY 52

>pdb|4F14|A Chain A, Structure Of The Sh3 Domain Of Human Nebulette In Complex With A Peptide Of Xirp2 Length = 64

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYVSL 523
           T  A+YDY A  +DE+SF   D I N++ ID+GW  G     G+ G+ PANY+  
Sbjct: 8   TYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEF 62

>pdb|2DL4|A Chain A, Solution Structure Of The First Sh3 Domain Of Stac Protein Length = 68

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           G T VALY +    ++++   P DIIT +E  +E WW+G    + G FPAN+V
Sbjct: 7   GNTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFV 59

>pdb|1ZLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Human Osteoclast Stimulating Factor Length = 58

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ 524
           ALY ++    DE+ F+  DII   +M D  WW+G   G+ GL P+NYV+ Q
Sbjct: 8   ALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQ 58

>pdb|2KRN|A Chain A, High Resolution Structure Of The Second Sh3 Domain Of Cd2ap Length = 60

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 468 LGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           +G     L+DY    +DE+     D+I  IE ++EGWW G  + + GLFP+N+V
Sbjct: 3   MGRQCKVLFDYSPQNEDELELIVGDVIDVIEEVEEGWWSGTLNNKLGLFPSNFV 56

>pdb|3HAJ|A Chain A, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121 Lattice) Length = 486

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/50 (52%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDE-GWWRGYC-HGQYGLFPANYV 521
           ALYDY+    DE+SF   D +T +E  DE GW +G   +GQ GL+PANYV
Sbjct: 433 ALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYV 482

>pdb|1UJ0|A Chain A, Crystal Structure Of Stam2 Sh3 Domain In Complex With A Ubpy-Derived Peptide Length = 62

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 34/49 (69%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS 522
           ALYD++A  D+E++F   ++IT ++  D  WW+G  H   GLFP+N+V+
Sbjct: 10  ALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVT 58

>pdb|1X2Q|A Chain A, Solution Structure Of The Sh3 Domain Of The Signal Transducing Adaptor Molecule 2 Length = 88

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS 522
           ALYD++A  D+E++F   +II  ++  D  WW+G  H   GLFP+N+V+
Sbjct: 22  ALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVT 70

>pdb|2K9G|A Chain A, Solution Structure Of The Third Sh3 Domain Of The Cin85 Adapter Protein Length = 73

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 474 ALYDYQASADDEISFDPDDIITNI--EMIDEGWWRGYCHGQYGLFPANYVSL 523
            ++ Y+A  DDE++    DI+T I  + ID GWW G  +G+ G+FP N+V L
Sbjct: 14  VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKL 65

>pdb|2YDL|A Chain A, Crystal Structure Of Sh3c From Cin85 Length = 69

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 475 LYDYQASADDEISFDPDDIIT--NIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           ++ Y+A  DDE++    DI+T  N + ID GWW G  +G+ G+FP N+V L
Sbjct: 8   IFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKL 58

>pdb|4GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain Complexed With A Ten-Residue Peptide Derived From Sos Direct Refinement Against Noes, J-Couplings, And 1h And 13c Chemical Shifts, 15 Structures Length = 74

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 472 AVALYDYQASADDEISFDPDDIITNI-EMIDEGWWRGYCHGQYGLFPANYVSLQ 524
           A+A YD++A+ADDE+SF   DI+  + E  D+ W++   +G+ G  P NY+ ++
Sbjct: 12  AIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMK 65

>pdb|2CUB|A Chain A, Solution Structure Of The Sh3 Domain Of The Human Cytoplasmic Protein Nck1 Length = 88

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 467 DLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS 522
           DL   A   ++Y A  +DE+S      +  +E   +GWWRG  +GQ G FP+NYV+
Sbjct: 15  DLNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVT 70

>pdb|2DA9|A Chain A, Solution Structure Of The Third Sh3 Domain Of Sh3-Domain Kinase Binding Protein 1 (Regulator Of Ubiquitous Kinase, Ruk) Length = 70

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 474 ALYDYQASADDEISFDPDDIITNI--EMIDEGWWRGYCHGQYGLFPANYVSL 523
            ++ Y+A  DDE++    DI+T I  + ID GWW G  +G+ G+FP N+V L
Sbjct: 12  VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKL 63

>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In Complex With A High Affinity Peptide From Pak2 Length = 59

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 468 LGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           LG    A +++Q + +DE+SF   D+I    + + GWW G  +G+ G FP+NYV
Sbjct: 3   LGSVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 56

>pdb|1HSQ|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase Cgamma Length = 71

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGL-FPANYV 521
           AL+DY+A  +DE++F    II N+E  + GWWRG   G+  L FP+NYV
Sbjct: 11  ALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYV 59

>pdb|2K6D|A Chain A, Cin85 Sh3-C Domain In Complex With Ubiquitin Length = 62

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 475 LYDYQASADDEISFDPDDIIT--NIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           ++ Y+A  DDE++    DI+T  N + ID GWW G  +G+ G+FP N+V L
Sbjct: 9   IFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKL 59

>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From Alpha- Pak Length = 65

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           A +++Q + +DE+SF   D+I    + + GWW G  +G+ G FP+NYV
Sbjct: 13  AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTLNGRTGWFPSNYV 60

>pdb|4IIM|A Chain A, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound With A Synthetic Peptide Length = 70

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           A ALY ++A  D+ ++F+ +D+IT +E  D  WW G   GQ G FP +YV L
Sbjct: 15  AQALYPWRAKKDNHLNFNKNDVITVLEQQDM-WWFGEVQGQKGWFPKSYVKL 65

>pdb|1WI7|A Chain A, Solution Structure Of The Sh3 Domain Of Sh3-Domain Kinase Binding Protein 1 Length = 68

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 476 YDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           + Y    DDE+     DII  +  ++EGWW G  +G+ G+FP+N++
Sbjct: 14  FSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFI 59

>pdb|2A36|A Chain A, Solution Structure Of The N-Terminal Sh3 Domain Of Drk Length = 59

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEG-WWRGYCHGQYGLFPANYVSLQ 524
           A+A +D+ A+ADDE+SF    I+  + M D+  W+R    G+ GL P+NY+ ++
Sbjct: 3   AIAKHDFSATADDELSFRKTQILKILNMEDDSNWYRAELDGKEGLIPSNYIEMK 56

>pdb|2A08|A Chain A, Structure Of The Yeast Yhh6 Sh3 Domain Length = 60

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDE--GWWRGYCHGQYGLFPANYVSL 523
           TAVALY++      +++F   D+IT ++  D    WW G  +G+ G+FPANYV +
Sbjct: 5   TAVALYNFAGEQPGDLAFKKGDVITILKKSDSQNDWWTGRTNGKEGIFPANYVRV 59

>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide Length = 64

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           A +++Q + +DE+SF   D+I    + + GWW G  +G+ G FP+NYV
Sbjct: 11  AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 58

>pdb|2YUO|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse Run And Tbc1 Domain Containing 3 Length = 78

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 31/55 (56%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           G  A AL D++   DDE+ F  +DIIT I   DE  W G  +G  G FPA +V +
Sbjct: 7   GRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEV 61

>pdb|2A37|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3 Domain Of Drk (Drkn Sh3 Domain) Length = 59

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDE-GWWRGYCHGQYGLFPANYVSLQ 524
           A+A +D+ A+ADDE+SF    I+  + M D+  W+R    G+ GL P+NY+ ++
Sbjct: 3   AIAKHDFSATADDELSFRKGQILKILNMEDDSNWYRAELDGKEGLIPSNYIEMK 56

>pdb|2JS0|A Chain A, Solution Structure Of Second Sh3 Domain Of Adaptor Nck Length = 61

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 31/55 (56%)
Query: 468 LGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS 522
           L   A   ++Y A  +DE+S      +  +E   +GWWRG  +GQ G FP+NYV+
Sbjct: 3   LNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVT 57

>pdb|2X3W|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 2) Length = 60

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDE-GWWRGYC-HGQYGLFPANYV 521
           G    ALYDY     DE+SF   D +T +   DE GW RG    GQ GL+PANYV
Sbjct: 3   GVRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYV 57

>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange Factor Length = 61

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           A +++Q + +DE+SF   D+I    + + GWW G  +G+ G FP+NYV
Sbjct: 11  AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 58

>pdb|2FRW|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Adaptor Protein Nck2 Length = 57

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           A   + Y A  +DE+S      +T +E   +GWWRG  +GQ G FP+NYV
Sbjct: 3   AFVKFAYVAEREDELSLVKGSRVTVMEKCSDGWWRGSYNGQIGWFPSNYV 52

>pdb|1YNZ|A Chain A, Sh3 Domain Of Yeast Pin3 Length = 58

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           ALY +    D ++   P D +  +E +   W++G C+G+ G+FPANYV
Sbjct: 7   ALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYV 54

>pdb|2DLM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Vinexin Length = 68

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           G  A   +D+QA +  E++    DI+   + +D+ W  G  HG+ G+FPANYV +
Sbjct: 7   GKAARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEV 61

>pdb|1K76|A Chain A, Solution Structure Of The C-Terminal Sem-5 Sh3 Domain (Minimized Average Structure) Length = 62

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS 522
           AL+D+      E++F   D+IT I   D  WW G  + + G+FP+NYV+
Sbjct: 9   ALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVA 57

>pdb|2CRE|A Chain A, Solution Structure Of Rsgi Ruh-036, An Sh3 Domain From Human Cdna Length = 71

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEM---IDEGWWRGYCHGQYGLFPANYVSL 523
           G  A ALYD      DE++F   DI+T +E      EGWW+   HG+ GL PAN + +
Sbjct: 7   GLLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQI 64

>pdb|4E6R|A Chain A, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2) From Homo Sapiens At 2.20 A Resolution Length = 58

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 28/50 (56%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           A   + Y A  +DE+S      +T  E   +GWWRG  +GQ G FP+NYV
Sbjct: 4   AFVXFAYVAEREDELSLVXGSRVTVXEXCSDGWWRGSYNGQIGWFPSNYV 53

>pdb|1OOT|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae Hypothetical 40.4 Kda Protein At 1.39 A Resolution Length = 60

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDE--GWWRGYCHGQYGLFPANYVSL 523
           AVALY +      ++ F   D+IT ++  D    WW G  +G+ G+FPANYV L
Sbjct: 6   AVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVEL 59

>pdb|2D8H|A Chain A, Solution Structure Of The Sh3 Domain Of Hypothetical Protein Sh3yl1 Length = 80

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEG--WWRGYCHGQYGLFPANYVSL 523
             ALY ++     +++F   D IT I   D    WW G   GQ G+FPANYV++
Sbjct: 20  VTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTM 73

>pdb|2KBT|A Chain A, Attachment Of An Nmr-Invisible Solubility Enhancement Tag (Inset) Using A Sortase-Mediated Protein Ligation Method Length = 142

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 471 TAVALYDYQASADDEISFDPDDIITNI-EMIDEGWWRGYCHGQYGLFPANYV 521
           TA A YD+ A    E+S    DII  + +   +GWWRG  +G+ G FP+NYV
Sbjct: 7   TAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYV 58

>pdb|4ESR|A Chain A, Molecular And Structural Characterization Of The Sh3 Domain Of Ahi-1 In Regulation Of Cellular Resistance Of Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine Kinase Inhibitors Length = 69

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 467 DLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC-HGQYGLFPANYVS 522
           D   T VALYDY A+  DE++    DII      +E WW G    GQ G FPAN+V+
Sbjct: 4   DTAPTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVA 60

>pdb|2NWM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Vinexin And Its Interaction With The Peptides From Vinculin Length = 65

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 476 YDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           +D+QA +  E++    DI+   + +D+ W  G  HG+ G+FPANYV +
Sbjct: 8   FDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEV 55

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ 524
           ALY ++    DE+  +  DII   +  D  WW+G   G+ GL P+NYV+ Q
Sbjct: 19  ALYTFEPRTPDELYIEEGDIIYITDXSDTNWWKGTSKGRTGLIPSNYVAEQ 69

>pdb|1AZE|A Chain A, Nmr Structure Of The Complex Between The C32s-Y7v Mutant Of The Nsh3 Domain Of Grb2 With A Peptide From Sos, 10 Structures Length = 56

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 472 AVALYDYQASADDEISFDPDDIITNI-EMIDEGWWRGYCHGQYGLFPANYVSLQ 524
           A+A  D++A+ADDE+SF   DI+  + E  D+ W++   +G+ G  P NY+ ++
Sbjct: 3   AIAKVDFKATADDELSFKRGDILKVLNEESDQNWYKAELNGKDGFIPKNYIEMK 56

>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 Length = 59

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 28/53 (52%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           G    ALYDY A   DE++F   D I   +    GWW G  +G+ G  PANYV
Sbjct: 4   GIQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYV 56

>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 Length = 58

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 28/53 (52%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           G    ALYDY A   DE++F   D I   +    GWW G  +G+ G  PANYV
Sbjct: 3   GIQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYV 55

>pdb|1SEM|A Chain A, Structural Determinants Of Peptide-Binding Orientation And Of Sequence Specificity In Sh3 Domains Length = 58

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           AL+D+      E++F   D+IT I   D  WW G  + + G+FP+NYV
Sbjct: 7   ALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54

>pdb|2FEI|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Cms Protein Length = 65

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 475 LYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           L++Y    +DE+     DII   E ++EGWW G  + + GLFP+N+V
Sbjct: 7   LFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFV 53

>pdb|1UUE|A Chain A, A-Spectrin Sh3 Domain (V44t, D48g Mutant) Length = 62

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
            +ALYDYQ  +  E++    DI+T +   ++ WW+   +G+ G  PA YV
Sbjct: 9   VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKTEVNGRQGFVPAAYV 58

>pdb|3SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor Length = 60

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           AL+D+      E++F   D+IT I   D  WW G  + + G+FP+NYV
Sbjct: 7   ALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54

>pdb|1J3T|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Intersectin 2 (Kiaa1256) Length = 74

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           A AL  + A  D+ ++F   DIIT +E   E WW G  HG  G FP +YV +
Sbjct: 13  AQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKI 63

>pdb|3U23|A Chain A, Atomic Resolution Crystal Structure Of The 2nd Sh3 Domain From Human Cd2ap (Cms) In Complex With A Proline-Rich Peptide From Human Rin3 Length = 65

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 475 LYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           L++Y    +DE+     DII   E ++EGWW G  + + GLFP+N+V
Sbjct: 13  LFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFV 59

>pdb|1BK2|A Chain A, A-Spectrin Sh3 Domain D48g Mutant Length = 57

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
            +ALYDYQ  +  E++    DI+T +   ++ WW+   +G+ G  PA YV
Sbjct: 4   VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNGRQGFVPAAYV 53

>pdb|2EQI|A Chain A, Solution Structure Of The Sh3 Domain From Phospholipase C, Gamma 2 Length = 69

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 9/58 (15%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYG-----LFPANYV 521
           G T  ALYDY+A   DE++F    +I N+     GWW+    G YG      FP+NYV
Sbjct: 7   GRTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWK----GDYGTRIQQYFPSNYV 60

>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE Nucleotide Exchange Factor(Gef) 6 Length = 76

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           A ++++ + +DE+S    DII    + + GWW G  +G+ G FP+NYV
Sbjct: 15  ARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYV 62

>pdb|2DL3|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Sorbin And Sh3 Domain-Containing Protein 1 Length = 68

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           G  A A +D++A    E+     DI+   + ID+ W+ G  HG+ G+FP  Y+ L
Sbjct: 7   GRPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIEL 61

>pdb|4GLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo Sapiens] Length = 72

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
            VALY +QA   +E+ F+  D I  +  +++GW  G   G+ G+FP  +V L
Sbjct: 16  GVALYRFQALEPNELDFEVGDKIRILATLEDGWLEGSLKGRTGIFPYRFVKL 67

>pdb|3M0P|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph 4. Length = 62

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
            +ALYDYQ  + DE++    DI+T +   ++ WW+   + + G  PA YV
Sbjct: 9   VLALYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 58

>pdb|3M0S|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph 7 Length = 57

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
            +ALYDYQ  + DE++    DI+T +   ++ WW+   + + G  PA YV
Sbjct: 4   VLALYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 53

>pdb|3I9Q|A Chain A, Crystal Structure Of The Triple Mutant S19g-P20d-R21s Of Alpha Spectrin Sh3 Domain Length = 57

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
            +ALYDYQ   D E++    DI+T +   ++ WW+   + + G  PA YV
Sbjct: 4   VLALYDYQEKGDSEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 53

>pdb|1WYX|A Chain A, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A Resolution Length = 69

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 468 LGYTAVALYDYQASADDEISFDPDDIITNIEMIDE---GWWRGYCHGQYGLFPANYVSL 523
           L   A ALYD  A + DE+SF   DI+T +E   +   GWW    HG+ G+ P N + +
Sbjct: 2   LNVLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKI 60

>pdb|1UFF|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Intersectin2 (Kiaa1256) Length = 93

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 474 ALYDYQASADDEISFDPDDIITNIE--MIDEGWWRGYCHGQYGLFPANYV 521
           ALY ++A   DE+SF+  DII   E  + + GW  G   G +G FP NYV
Sbjct: 10  ALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYV 59

>pdb|2M0Y|A Chain A, Solution Structure Of The Sh3 Domain Of Dock180 Length = 74

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC---HGQYGLFPANYVSLQQ 525
            VA Y+Y A   DE+S    D +  +E   EGW+RGY      + G+FPA+Y+ L++
Sbjct: 14  GVAFYNYDARGADELSLQIGDTVHILETY-EGWYRGYTLRKKSKKGIFPASYIHLKE 69

>pdb|1WXU|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse Peroxisomal Biogenesis Factor 13 Length = 93

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 459 GTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDE-----GWWRGYCHGQ- 512
           GTN  + ED    A A YD+ A +D+EISF   D++ N+ + ++     GW      GQ 
Sbjct: 7   GTNWASGEDDHVVARAEYDFVAVSDEEISFRAGDML-NLALKEQQPKVRGWLLASLDGQT 65
Query: 513 YGLFPANYVSL 523
            GL PANYV +
Sbjct: 66  TGLIPANYVKI 76

>pdb|2LJ1|A Chain A, The Third Sh3 Domain Of R85fl With Ataxin-7 Prr Length = 64

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 464 TEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYV 521
           T +DL ++  ALY Y    DDE+     DI+  +E  D+GW+ G      Q+G FP NYV
Sbjct: 2   TSQDL-FSYQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYV 60

>pdb|2CDT|A Chain A, Alpha-Spectrin Sh3 Domain A56s Mutant Length = 62

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
            +ALYDYQ  +  E++    DI+T +   ++ WW+   + + G  PA+YV
Sbjct: 9   VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPASYV 58

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	525
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	7e-30
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	1e-29
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	2e-26
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	1e-25
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	1e-25
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	1e-25
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	3e-25
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	3e-25
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	4e-25
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	4e-25
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	4e-25
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	4e-25
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	5e-25
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	8e-25
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	1e-24
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	1e-24
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	1e-24
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	2e-24
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	2e-24
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	2e-24
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	2e-24
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	2e-24
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	3e-24
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	4e-24
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	5e-24
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	7e-24
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	7e-24
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	7e-24
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	8e-24
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	8e-24
3u23_A	65	CD2-associated protein; structural genomics, struc	9e-24
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	1e-23
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	1e-23
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	1e-23
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	1e-23
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	1e-23
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	2e-23
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	2e-23
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	2e-23
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	3e-23
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	3e-23
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	3e-23
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	3e-23
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens} Length	5e-23
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	6e-23
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	7e-23
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	8e-23
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	8e-23
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	9e-23
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	1e-22
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	2e-22
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	2e-22
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	2e-22
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	2e-22
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	3e-22
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	4e-22
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	4e-22
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	4e-22
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	6e-22
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	7e-22
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	1e-21
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	2e-21
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	3e-21
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	4e-21
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	4e-21
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	6e-21
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	8e-21
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	9e-21
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	2e-20
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	2e-20
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	2e-20
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	2e-20
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	2e-20
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	2e-20
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	3e-20
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	5e-20
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	5e-20
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	5e-20
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	6e-20
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	8e-20
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	1e-19
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	2e-19
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	2e-19
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	2e-19
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	2e-19
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	3e-19
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	4e-19
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	4e-19
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	5e-19
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	9e-19
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	9e-19
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	1e-18
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	2e-18
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	2e-18
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	4e-18
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	4e-18
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	5e-18
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	6e-18
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	6e-18
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	8e-18
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	9e-18
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	1e-17
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	2e-17
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	3e-17
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	6e-17
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	2e-16
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	2e-16
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	2e-16
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	2e-16
1wxb_A	68	Epidermal growth factor receptor pathway substrate	2e-16
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	3e-16
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	3e-16
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	3e-16
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	3e-16
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	3e-16
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	4e-16
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	4e-16
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	5e-16
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	5e-16
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	7e-16
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	8e-16
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	1e-15
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	9e-16
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	1e-15
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	1e-15
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	1e-15
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	1e-15
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	2e-15
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	2e-15
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	2e-15
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	2e-15
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	2e-15
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	2e-09
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	3e-15
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	4e-15
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	4e-15
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	8e-15
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	1e-14
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	1e-14
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	1e-14
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	1e-14
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	3e-14
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	3e-14
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	6e-14
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	6e-14
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	6e-14
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	6e-14
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	7e-14
1awj_A	77	ITK; transferase, regulatory intramolecular comple	1e-13
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	1e-13
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	1e-11
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	1e-13
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	2e-13
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	2e-13
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	2e-09
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	2e-13
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	3e-13
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	3e-13
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	3e-13
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	5e-13
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	5e-13
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	6e-13
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	7e-13
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	1e-12
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	1e-12
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	1e-12
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	6e-12
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	6e-11
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	9e-12
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-11
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-10
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-06
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	1e-11
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	2e-11
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	2e-11
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	4e-11
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	4e-11
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	2e-10
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	3e-10
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	3e-10
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	3e-10
1i07_A	60	Epidermal growth factor receptor kinase substrate	3e-10
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	8e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	9e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-05
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	2e-09
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	2e-08
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	3e-08
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	5e-08
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	8e-08
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	5e-06
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	5e-06
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	1e-07
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	2e-07
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	3e-07
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	3e-05
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	5e-07
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	6e-07
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	6e-07
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	1e-06
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	2e-06
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	2e-06
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	7e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	2e-05
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	2e-05
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	5e-05
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	9e-05
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	3e-04
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	3e-04
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	7e-04
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	4e-04
1ug1_A	92	KIAA1010 protein; structural genomics, SH3 domain,	6e-04

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score =  110 bits (278), Expect = 7e-30
 Identities = 53/68 (77%), Positives = 59/68 (86%)

Query: 458 QGTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFP 517
            GT ++ E DLG TAVALYDYQA+ DDEISFDPDDIITNIEMID+GWWRG C G+YGLFP
Sbjct: 6   SGTYDEYENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFP 65

Query: 518 ANYVSLQQ 525
           ANYV L+Q
Sbjct: 66  ANYVELRQ 73

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} PDB: 2d1x_A Length = 65

 Score =  109 bits (275), Expect = 1e-29
 Identities = 49/61 (80%), Positives = 54/61 (88%)

Query: 465 EEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ 524
             DLG TA+ALYDYQA+ DDEISFDPDDIITNIEMID+GWWRG C G+YGLFPANYV L+
Sbjct: 5   SSDLGITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELR 64

Query: 525 Q 525
           Q
Sbjct: 65  Q 65

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1 Length = 62

 Score =  100 bits (252), Expect = 2e-26
 Identities = 21/56 (37%), Positives = 34/56 (60%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ 524
                ALYD++A  D+E++F   ++IT ++  D  WW+G  H   GLFP+N+V+  
Sbjct: 5   ARRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTTD 60

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A Length = 73

 Score = 99.3 bits (248), Expect = 1e-25
 Identities = 24/55 (43%), Positives = 30/55 (54%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           G    ALYD++   + E+ F   DIIT    IDE W+ G  HG  G FP NYV +
Sbjct: 7   GPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEI 61

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A Length = 58

 Score = 98.4 bits (246), Expect = 1e-25
 Identities = 28/55 (50%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYVSL 523
            A A YDY A+ D+E++F  +D I NIE +D+ WW G     G  GLFP+NYVSL
Sbjct: 2   WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSL 56

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens} Length = 72

 Score = 98.9 bits (247), Expect = 1e-25
 Identities = 21/68 (30%), Positives = 37/68 (54%)

Query: 456 RQQGTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGL 515
                +    +       A+YD++A+ D+E++F   +IIT ++  D  WW+G  H   GL
Sbjct: 4   HHHHHSHMNHQHEARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGL 63

Query: 516 FPANYVSL 523
           FP+N+V+ 
Sbjct: 64  FPSNFVTA 71

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 98.1 bits (245), Expect = 3e-25
 Identities = 22/53 (41%), Positives = 30/53 (56%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           G    ALY ++    DE+ F+  DII   +M D  WW+G   G+ GL P+NYV
Sbjct: 7   GKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYV 59

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A Length = 58

 Score = 97.2 bits (243), Expect = 3e-25
 Identities = 23/53 (43%), Positives = 28/53 (52%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           G    ALYDY A   DE++F   D I   +    GWW G  +G+ G  PANYV
Sbjct: 3   GIQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYV 55

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A Length = 58

 Score = 97.2 bits (243), Expect = 4e-25
 Identities = 21/52 (40%), Positives = 33/52 (63%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           A ALYD++A  +DE+ F   +++  ++  +  WW G  H + GLFPANYV+ 
Sbjct: 4   ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAP 55

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens} Length = 58

 Score = 97.2 bits (243), Expect = 4e-25
 Identities = 25/51 (49%), Positives = 33/51 (64%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
            A+  +DYQA  DDE++    +IITNI   D GWW G  +G+ GLFP N+V
Sbjct: 3   EAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFV 53

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 97.8 bits (244), Expect = 4e-25
 Identities = 24/55 (43%), Positives = 31/55 (56%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           G  A AL D++   DDE+ F  +DIIT I   DE  W G  +G  G FPA +V +
Sbjct: 7   GRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEV 61

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 97.9 bits (244), Expect = 4e-25
 Identities = 22/67 (32%), Positives = 36/67 (53%)

Query: 459 GTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPA 518
           G+       +     ALYD++A  D+E++F   +II  ++  D  WW+G  H   GLFP+
Sbjct: 7   GSEIQLNNKVARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPS 66

Query: 519 NYVSLQQ 525
           N+V+   
Sbjct: 67  NFVTTNL 73

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 96.9 bits (242), Expect = 5e-25
 Identities = 22/53 (41%), Positives = 32/53 (60%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           G T VALY +    ++++   P DIIT +E  +E WW+G    + G FPAN+V
Sbjct: 7   GNTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFV 59

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A Length = 64

 Score = 96.5 bits (241), Expect = 8e-25
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYVSL 523
             T  A+YDY A  +DE+SF   D I N++ ID+GW  G     G+ G+ PANY+  
Sbjct: 6   LRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEF 62

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A Length = 68

 Score = 96.1 bits (240), Expect = 1e-24
 Identities = 18/53 (33%), Positives = 29/53 (54%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           G  A A +D++A    E+     DI+   + ID+ W+ G  HG+ G+FP  Y+
Sbjct: 7   GRPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYI 59

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A Length = 59

 Score = 95.8 bits (239), Expect = 1e-24
 Identities = 20/53 (37%), Positives = 32/53 (60%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           G    A +++Q + +DE+SF   D+I    + + GWW G  +G+ G FP+NYV
Sbjct: 4   GSVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 56

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus} Length = 60

 Score = 95.7 bits (239), Expect = 1e-24
 Identities = 25/51 (49%), Positives = 30/51 (58%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
              ALY Y A   DE+SF+ +DII  I+    GWW G   G+ GLFP NYV
Sbjct: 7   QCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYV 57

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 95.8 bits (239), Expect = 2e-24
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEM---IDEGWWRGYCHGQYGLFPANYVSL 523
           G  A ALYD      DE++F   DI+T +E      EGWW+   HG+ GL PAN + +
Sbjct: 7   GLLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQI 64

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 95.9 bits (239), Expect = 2e-24
 Identities = 24/53 (45%), Positives = 32/53 (60%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           G    ALY +QA  DDE++ +  DI+   E  +EGWW G  +G+ G FPA YV
Sbjct: 7   GRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYV 59

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A Length = 58

 Score = 94.9 bits (237), Expect = 2e-24
 Identities = 22/52 (42%), Positives = 30/52 (57%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
             AL+D+    D E+ F   D I  ++  D  WW+G CHGQ G+FP NYV+ 
Sbjct: 5   VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTA 56

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens} Length = 58

 Score = 94.9 bits (237), Expect = 2e-24
 Identities = 22/54 (40%), Positives = 31/54 (57%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ 524
              ALY ++    DE+ F+  DII   +M D  WW+G   G+ GL P+NYV+ Q
Sbjct: 5   VFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQ 58

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus} Length = 68

 Score = 95.0 bits (237), Expect = 2e-24
 Identities = 18/53 (33%), Positives = 30/53 (56%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           G  A AL +Y+     ++ F+  D+I     +DE W++G  +G  G+FPA+ V
Sbjct: 7   GPRAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSV 59

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus} Length = 73

 Score = 95.0 bits (237), Expect = 3e-24
 Identities = 23/51 (45%), Positives = 30/51 (58%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           +  ALYD++   D E+ F   D+IT    IDE W+ G  HGQ G FP +YV
Sbjct: 15  SCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYV 65

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 95.1 bits (237), Expect = 4e-24
 Identities = 24/51 (47%), Positives = 31/51 (60%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
             VA+YDY    +DE+SF    II  I+  D+GW+ G  +G  GLFP NYV
Sbjct: 19  KVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYV 69

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A Length = 64

 Score = 94.2 bits (235), Expect = 5e-24
 Identities = 19/51 (37%), Positives = 31/51 (60%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
              A +++Q + +DE+SF   D+I    + + GWW G  +G+ G FP+NYV
Sbjct: 8   VVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 58

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 69

 Score = 93.9 bits (234), Expect = 7e-24
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQY-GLFPANYV 521
           G T  ALYDY+A   DE++F    +I N+     GWW+G    +    FP+NYV
Sbjct: 7   GRTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYV 60

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens} Length = 69

 Score = 93.9 bits (234), Expect = 7e-24
 Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 465 EEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRG-YCHGQYGLFPANYVSL 523
           + D   T VALYDY A+  DE++    DII      +E WW G    GQ G FPAN+V+ 
Sbjct: 2   QVDTAPTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVAS 61

Query: 524 QQ 525
           + 
Sbjct: 62  ET 63

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 94.5 bits (235), Expect = 7e-24
 Identities = 23/64 (35%), Positives = 33/64 (51%)

Query: 458 QGTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFP 517
            G   +   DL   A   ++Y A  +DE+S      +  +E   +GWWRG  +GQ G FP
Sbjct: 6   SGDPGERLYDLNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFP 65

Query: 518 ANYV 521
           +NYV
Sbjct: 66  SNYV 69

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D Length = 60

 Score = 93.4 bits (233), Expect = 8e-24
 Identities = 27/57 (47%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDE-GWWRGYCH-GQYGLFPANYVSL 523
           G    ALYDY     DE+SF   D +T +   DE GW RG    GQ GL+PANYV  
Sbjct: 3   GVRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEA 59

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae} Length = 54

 Score = 93.4 bits (233), Expect = 8e-24
 Identities = 27/52 (51%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDE-GWWRGYCHGQYGLFPANYV 521
              A+Y Y+A  DDEIS DP DIIT I   D  GW  G C G  GLFP +Y 
Sbjct: 2   AMEAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYC 53

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A Length = 65

 Score = 93.5 bits (233), Expect = 9e-24
 Identities = 19/50 (38%), Positives = 29/50 (58%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
              L++Y    +DE+     DII   E ++EGWW G  + + GLFP+N+V
Sbjct: 10  CKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFV 59

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus} Length = 60

 Score = 93.0 bits (232), Expect = 1e-23
 Identities = 16/53 (30%), Positives = 24/53 (45%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
            A+A +DY   +  E+SF     +       E WW G  +G  GL P  Y+ +
Sbjct: 8   FAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIVV 60

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 72

 Score = 93.5 bits (233), Expect = 1e-23
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDE-GWWRGYCHGQYGLFPANYV 521
              A ALY  +A  D E+SF    +  N+    E GW  G  +G+ GL P NYV
Sbjct: 10  FRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYV 63

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 68

 Score = 93.5 bits (233), Expect = 1e-23
 Identities = 18/53 (33%), Positives = 29/53 (54%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           G      + Y    DDE+     DII  +  ++EGWW G  +G+ G+FP+N++
Sbjct: 7   GRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFI 59

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A Length = 58

 Score = 93.0 bits (232), Expect = 1e-23
 Identities = 18/51 (35%), Positives = 29/51 (56%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
              ALY +    D ++   P D +  +E +   W++G C+G+ G+FPANYV
Sbjct: 4   YVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYV 54

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens} Length = 68

 Score = 93.1 bits (232), Expect = 1e-23
 Identities = 22/51 (43%), Positives = 27/51 (52%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
               LYD++     E+ F   DIIT    IDE W+ G  HG+ G FP NYV
Sbjct: 5   CCRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYV 55

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A Length = 61

 Score = 92.7 bits (231), Expect = 2e-23
 Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGL-FPANYV 521
              AL+DY+A  +DE++F    II N+E  D GWWRG   G+  L FP+NYV
Sbjct: 5   AVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYV 56

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A Length = 60

 Score = 92.2 bits (230), Expect = 2e-23
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDE--GWWRGYCHGQYGLFPANYVSL 523
            AVALY +      ++ F   D+IT ++  D    WW G  +G+ G+FPANYV L
Sbjct: 5   KAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVEL 59

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens} Length = 79

 Score = 93.1 bits (232), Expect = 2e-23
 Identities = 17/70 (24%), Positives = 32/70 (45%)

Query: 452 MEELRQQGTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHG 511
           M        +   +      A AL+D+  ++  E++F   D+I  +  I++ W  G   G
Sbjct: 1   MNHKVHHHHHHHMDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRG 60

Query: 512 QYGLFPANYV 521
             G+FP ++V
Sbjct: 61  ATGIFPLSFV 70

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A Length = 62

 Score = 92.3 bits (230), Expect = 3e-23
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDE-GWWRGYCHGQYGLFPANYV 521
             +  YDY A  DDE++    +II N++ + E GW  G  +G+ G+FP N+V
Sbjct: 3   DYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFV 54

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 98

 Score = 93.2 bits (232), Expect = 3e-23
 Identities = 22/53 (41%), Positives = 33/53 (62%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
             +A+YDY A+ +DE+SF    +I  +   D  WW+G  +G  GLFP+NYV +
Sbjct: 36  QVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKM 88

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 81

 Score = 92.5 bits (230), Expect = 3e-23
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 459 GTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEM--IDEGWWRGYCHGQYGLF 516
           G N+  E      A  LYDY A+   E+S   D++IT   +  +D  W  G    Q G  
Sbjct: 7   GLNDLKESSNNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKV 66

Query: 517 PANYVSL 523
           P  Y+ L
Sbjct: 67  PITYLEL 73

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 92.0 bits (229), Expect = 3e-23
 Identities = 19/55 (34%), Positives = 26/55 (47%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQQ 525
            AVA + Y      E+SF   D++   E     WWRG  +G  GL P  Y++L  
Sbjct: 12  EAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITLPA 66

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens} Length = 65

 Score = 91.5 bits (228), Expect = 5e-23
 Identities = 19/51 (37%), Positives = 30/51 (58%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
            A   +D+QA +  E++    DI+   + +D+ W  G  HG+ G+FPANYV
Sbjct: 3   AARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYV 53

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A Length = 60

 Score = 91.0 bits (227), Expect = 6e-23
 Identities = 16/50 (32%), Positives = 29/50 (58%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           A AL+D+  ++  E++F   D+I  +  I++ W  G   G  G+FP ++V
Sbjct: 7   AEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFV 56

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 91.2 bits (227), Expect = 7e-23
 Identities = 18/57 (31%), Positives = 26/57 (45%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQQ 525
           G   VA+ DY A+ + ++SF   + I  +      WW G   G  G  PAN+V    
Sbjct: 7   GEEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVGKHS 63

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 90.8 bits (226), Expect = 8e-23
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 459 GTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPA 518
           G++  + E +   A+A +DY      E+SF     +   +   + WW G  +G  GL P 
Sbjct: 1   GSSGSSGEPI--EAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPH 58

Query: 519 NYVSLQQ 525
            Y+ +Q 
Sbjct: 59  QYIVVQD 65

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens} Length = 69

 Score = 90.8 bits (226), Expect = 8e-23
 Identities = 19/51 (37%), Positives = 26/51 (50%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
              ALYDY A   DE+     DI+  I   ++GWW    +GQ G  P +Y+
Sbjct: 10  EYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYL 60

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A Length = 71

 Score = 90.8 bits (226), Expect = 9e-23
 Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGL-FPANYV 521
              AL+DY+A  +DE++F    II N+E  + GWWRG   G+  L FP+NYV
Sbjct: 8   AVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYV 59

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens} Length = 65

 Score = 90.0 bits (224), Expect = 1e-22
 Identities = 19/50 (38%), Positives = 29/50 (58%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
              L++Y    +DE+     DII   E ++EGWW G  + + GLFP+N+V
Sbjct: 4   CKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFV 53

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens} Length = 70

 Score = 90.0 bits (224), Expect = 2e-22
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHG--QYGLFPANYV 521
           G  A+A +++      E+SF   + IT +  +DE W+ G   G  + G+FP  YV
Sbjct: 7   GGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYV 61

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70

 Score = 90.0 bits (224), Expect = 2e-22
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYV 521
           G    A+Y Y+   +DE+     D +  ++  D+GW+ G      ++G FP NYV
Sbjct: 7   GTPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYV 61

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 90.5 bits (225), Expect = 2e-22
 Identities = 17/53 (32%), Positives = 32/53 (60%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           +A A++D+   A+ E++F   D+I  ++  ++ WW G    + G FPA++V L
Sbjct: 12  SAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRL 64

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 70

 Score = 89.6 bits (223), Expect = 2e-22
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNI--EMIDEGWWRGYCHGQYGLFPANYVSL 523
           G     ++ Y+A  DDE++    DI+T I  + ID GWW G  +G+ G+FP N+V L
Sbjct: 7   GDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKL 63

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 89.2 bits (222), Expect = 3e-22
 Identities = 13/53 (24%), Positives = 25/53 (47%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           G     L+ +     +E+   P +I+  ++  ++ W     +GQ GL P NY+
Sbjct: 7   GEAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYL 59

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 74

 Score = 89.3 bits (222), Expect = 4e-22
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
              A AL  + A  D+ ++F   DIIT +E   E WW G  HG  G FP +YV +
Sbjct: 10  NLKAQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKI 63

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 76

 Score = 89.3 bits (222), Expect = 4e-22
 Identities = 18/51 (35%), Positives = 30/51 (58%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
              A ++++ + +DE+S    DII    + + GWW G  +G+ G FP+NYV
Sbjct: 12  IVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYV 62

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 88.9 bits (221), Expect = 4e-22
 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMI--DEGWWRGYCHGQYGLFPANYV 521
           G TAVA Y++ A    E+S    D++     I  D+GWW+G  +G+ G FP+ YV
Sbjct: 7   GGTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYV 61

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 89.4 bits (222), Expect = 6e-22
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC--HGQYGLFPANYVSLQQ 525
            AVA Y ++   + E+SF   + I  I  ++E W+ G     G+ G+FPA+YV + +
Sbjct: 19  EAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVSR 75

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 62

 Score = 88.0 bits (219), Expect = 7e-22
 Identities = 17/53 (32%), Positives = 29/53 (54%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           G    AL+ Y+A+  +++ F   DII  +  ++E W  G   G+ G+FP  +V
Sbjct: 5   GSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFV 57

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 88.2 bits (219), Expect = 1e-21
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 459 GTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDE--GWWRGYCHGQYGLF 516
           G       +      ALY ++     +++F   D IT I   D    WW G   GQ G+F
Sbjct: 7   GHERVGNLNQPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIF 66

Query: 517 PANYVSLQQ 525
           PANYV++  
Sbjct: 67  PANYVTMNS 75

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A Length = 58

 Score = 86.8 bits (216), Expect = 2e-21
 Identities = 19/50 (38%), Positives = 28/50 (56%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
             AL+D+      E++F   D+IT I   D  WW G  + + G+FP+NYV
Sbjct: 5   VQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A Length = 67

 Score = 86.5 bits (215), Expect = 3e-21
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHG--QYGLFPANYV 521
           A+A +++      E+SF   + IT +  +DE W+ G   G  + G+FP  YV
Sbjct: 9   AIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYV 60

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A Length = 74

 Score = 86.2 bits (214), Expect = 4e-21
 Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEM-IDEGWWRGYCHGQYGLFPANYVSLQ 524
              A+A YD++A+ADDE+SF   DI+  +    D+ W++   +G+ G  P NY+ ++
Sbjct: 9   SMEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMK 65

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 86.2 bits (214), Expect = 4e-21
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIE---MIDEGWWRGYCHGQYGLFPANYV 521
              ALYDY+   DDE+SF    II  +      D+G+W G  +G+ G+FP+  V
Sbjct: 10  FVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLV 63

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ... Length = 62

 Score = 85.4 bits (212), Expect = 6e-21
 Identities = 17/57 (29%), Positives = 30/57 (52%)

Query: 465 EEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           +E      + LYDYQ  +  E++    DI+T +   ++ WW+   +G+ G  PA Y+
Sbjct: 2   DETGKELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYL 58

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens} Length = 69

 Score = 85.1 bits (211), Expect = 8e-21
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 468 LGYTAVALYDYQASADDEISFDPDDIITNIEMIDE---GWWRGYCHGQYGLFPANYVSL 523
           L   A ALYD  A + DE+SF   DI+T +E   +   GWW    HG+ G+ P N + +
Sbjct: 2   LNVLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKI 60

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens} Length = 89

 Score = 85.7 bits (212), Expect = 9e-21
 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 6/60 (10%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMI-----DEGWWRGYCH-GQYGLFPANYVS 522
           G    A++DY+A+ D+E++    D +  +        DEGWW G    G+ G+FP+NYV+
Sbjct: 29  GPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYVA 88

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum} Length = 80

 Score = 84.7 bits (210), Expect = 2e-20
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDE-GWWRGYCHGQYGLFPANYV 521
            A AL DY  S    + F  +DIIT      E  W+ G  +G+ G FP ++V
Sbjct: 12  YARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHV 63

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85

 Score = 84.8 bits (210), Expect = 2e-20
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 472 AVALYDYQASADDEISFDPDDIIT--NIEMIDEGWWRGYCHGQYGLFPANYV 521
            +AL  Y       +SF   D+I    +  ++ GW  G   G+ GLFPA+ V
Sbjct: 11  VIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIV 62

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae} Length = 59

 Score = 84.1 bits (209), Expect = 2e-20
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY--CHGQYGLFPANYVSLQQ 525
           G  AVALYD++   D+E+     DI+       +GW         + GL P  +VS  Q
Sbjct: 1   GQRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQ 59

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 93

 Score = 85.2 bits (211), Expect = 2e-20
 Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMI--DEGWWRGYCHGQYGLFPANYV 521
              ALY ++A   DE+SF+  DII   E    + GW  G   G +G FP NYV
Sbjct: 7   GYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYV 59

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A Length = 76

 Score = 84.3 bits (209), Expect = 2e-20
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQY---GLFPANYVSL 523
              +YD QA  DDE++F   ++I      D+ WW G+  GQ    G+FP ++V +
Sbjct: 13  VKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHI 67

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A Length = 68

 Score = 83.9 bits (208), Expect = 2e-20
 Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 5/66 (7%)

Query: 464 TEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHG-----QYGLFPA 518
           +E ++ +  VA + Y++  +D+++F+ D  I    + D  W+ G           G+FP 
Sbjct: 2   SEPEVPFKVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPK 61

Query: 519 NYVSLQ 524
           ++V++Q
Sbjct: 62  SFVAVQ 67

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens} Length = 92

 Score = 84.4 bits (209), Expect = 3e-20
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 456 RQQGTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGL 515
           +Q GTN+  E          + Y    DDE+     DII  +  ++EGWW G  +G+ G+
Sbjct: 6   QQMGTNKRGERRRRR-CQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGM 64

Query: 516 FPANYV 521
           FP+N++
Sbjct: 65  FPSNFI 70

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1 Length = 83

 Score = 83.6 bits (207), Expect = 5e-20
 Identities = 18/64 (28%), Positives = 32/64 (50%)

Query: 458 QGTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFP 517
              +  ++E      +ALYDYQ  +  E++    DI+T +   ++ WW+   + + G  P
Sbjct: 6   HHHHHGSDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVP 65

Query: 518 ANYV 521
           A YV
Sbjct: 66  AAYV 69

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A Length = 69

 Score = 83.1 bits (206), Expect = 5e-20
 Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNI--EMIDEGWWRGYCHGQYGLFPANYV 521
               ++ Y+A  DDE++    DI+T I  + ID GWW G  +G+ G+FP N+V
Sbjct: 4   YCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFV 56

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} Length = 73

 Score = 83.1 bits (206), Expect = 5e-20
 Identities = 17/51 (33%), Positives = 28/51 (54%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
             +ALYDYQ  +  E++    DI+T +   ++ WW+   + + G  PA YV
Sbjct: 7   LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 57

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens} Length = 73

 Score = 82.8 bits (205), Expect = 6e-20
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNI--EMIDEGWWRGYCHGQYGLFPANYVSL 523
               ++ Y+A  DDE++    DI+T I  + ID GWW G  +G+ G+FP N+V L
Sbjct: 11  YCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKL 65

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A Length = 64

 Score = 82.3 bits (204), Expect = 8e-20
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNI--EMIDEGWWRGYCHGQYGLFPANYV 521
               L+ Y  + +DE++F   +II  I  E  + GWW+G  +G+ G+FP N+ 
Sbjct: 8   YCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFA 60

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus} Length = 70

 Score = 81.9 bits (203), Expect = 1e-19
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC--HGQYGLFPANYV 521
           G   VAL+ Y A   +E+     + I  +    +GW +G     G+ G+FP++YV
Sbjct: 7   GNMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYV 61

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 69

 Score = 81.5 bits (202), Expect = 2e-19
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           G   +ALY Y +    +++F   + I   +  D  WW G    + G+FP+NYV
Sbjct: 8   GEEYIALYPYSSVEPGDLTFTEGEEILVTQ-KDGEWWTGSIGDRSGIFPSNYV 59

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 81.7 bits (202), Expect = 2e-19
 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 8/61 (13%)

Query: 469 GYTAVALYDYQAS-------ADDEISFDPDDIITNIEMIDE-GWWRGYCHGQYGLFPANY 520
           G   VALYDY           + E++F   DIIT    IDE G++ G  +GQ GL P+N+
Sbjct: 7   GRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNF 66

Query: 521 V 521
           +
Sbjct: 67  L 67

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A Length = 58

 Score = 81.0 bits (200), Expect = 2e-19
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
            A   + Y A  +DE+S      +T +E   +GWWRG  +GQ G FP+NYV
Sbjct: 3   PAFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYV 53

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A Length = 57

 Score = 80.7 bits (200), Expect = 2e-19
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRG-YCHGQYGLFPANYV 521
                AL+D+  + ++++ F   DI+   +  +E WW      G+ G+ P  YV
Sbjct: 1   AEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 54

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A Length = 73

 Score = 81.3 bits (201), Expect = 3e-19
 Identities = 12/52 (23%), Positives = 17/52 (32%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
               +       D +     DII  I     G W G  + + G F   YV +
Sbjct: 14  VHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDV 65

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 71

 Score = 80.4 bits (199), Expect = 4e-19
 Identities = 16/51 (31%), Positives = 24/51 (47%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
             V +  Y + + DEI F+    +  I    EGWW     G+ G  PA+Y+
Sbjct: 10  KYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYL 60

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1 Length = 65

 Score = 80.0 bits (198), Expect = 5e-19
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRG-YCHGQYGLFPANYV 521
             AL+D+  + ++++ F   DI+   +  +E WW      G+ G+ P  YV
Sbjct: 6   VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 56

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 79.6 bits (197), Expect = 9e-19
 Identities = 13/51 (25%), Positives = 24/51 (47%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
             V + +Y+   + E+S    +++  IE  + GWW      + G  PA Y+
Sbjct: 10  QYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYL 60

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 58

 Score = 79.1 bits (196), Expect = 9e-19
 Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 3/58 (5%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWW---RGYCHGQYGLFPANYVSL 523
           G     LY Y    DDEI+  P D I+ +       W        G+ GL P  Y+ +
Sbjct: 1   GMENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIRI 58

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A 3h0f_A* Length = 73

 Score = 79.3 bits (196), Expect = 1e-18
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRG--YCHGQYGLFPANYV 521
             VALYDY+A  +D++SF   +    +   +  WW       G+ G  P+NYV
Sbjct: 17  LFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 69

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae} Length = 70

 Score = 78.9 bits (195), Expect = 2e-18
 Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 4/62 (6%)

Query: 465 EEDLGYTAVALYDYQASADD--EISFDPDDIITNIEMIDEGWWRGYC-HGQYGLFPANYV 521
           +++  Y A ALY Y A  DD  EISF+ ++I+  +  I+  WW+    +G+ G+ P+NYV
Sbjct: 1   DDNFIYKAKALYPYDADDDDAYEISFEQNEILQ-VSDIEGRWWKARRANGETGIIPSNYV 59

Query: 522 SL 523
            L
Sbjct: 60  QL 61

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 78.9 bits (195), Expect = 2e-18
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 464 TEEDLGYTAVALYDYQASA-DDEISFDPDDIITNIEM-IDEGWWRGY-CHGQYGLFPANY 520
               +   A  +YD+ A   ++E++    +IIT     +  GW  G    G+ GL P +Y
Sbjct: 4   GSSGMATKARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDY 63

Query: 521 V 521
           V
Sbjct: 64  V 64

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus} Length = 93

 Score = 78.3 bits (193), Expect = 4e-18
 Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 5/65 (7%)

Query: 464 TEEDLGYTAVALYDYQASADDEISFDPDDIIT----NIEMIDEGWWRGYCHGQY-GLFPA 518
           + ED    A A YD+ A +D+EISF   D++       +    GW      GQ  GL PA
Sbjct: 12  SGEDDHVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPA 71

Query: 519 NYVSL 523
           NYV +
Sbjct: 72  NYVKI 76

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus} Length = 71

 Score = 77.7 bits (192), Expect = 4e-18
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYV 521
           T  A++ +    +DE+  + DD +      ++ W+  Y    G  G+FPA Y 
Sbjct: 8   THRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYA 60

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 77.3 bits (191), Expect = 5e-18
 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 469 GYTAVALYDYQASAD-DEISFDPDDIITNIEMIDEGWWRG--YCHGQYGLFPANYV 521
           G    A+  Y    D DEISF   D+      +++GW         + GL   + V
Sbjct: 7   GRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLV 62

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 80

 Score = 77.5 bits (191), Expect = 6e-18
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHG-----QYGLFPANYVSL 523
            A     Y AS  +++S  P  +I  ++    GWW+G         Q G FPA++V L
Sbjct: 9   IAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKL 66

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A* Length = 62

 Score = 76.8 bits (190), Expect = 6e-18
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYV 521
           T  A++ +    +DE+  + DD +      ++ W+  Y    G  G+FPA Y 
Sbjct: 5   THRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYA 57

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae} Length = 73

 Score = 77.0 bits (190), Expect = 8e-18
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRG--YCHGQYGLFPANYVSL 523
           AVALYD++   D+E+     DI+       +GW         + GL P  +VS 
Sbjct: 8   AVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSY 61

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens} Length = 67

 Score = 76.6 bits (189), Expect = 9e-18
 Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 472 AVALYDYQASA--DDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           A  +     +A     ++ +  +++   ++   G W G C+G+ G FP  +V L
Sbjct: 9   ARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRL 62

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 88

 Score = 77.1 bits (190), Expect = 1e-17
 Identities = 14/52 (26%), Positives = 23/52 (44%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           A+      A     ++ +  DI+    M   G W G  +G+ GLFP  +V +
Sbjct: 21  AIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKI 72

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens} Length = 83

 Score = 76.1 bits (187), Expect = 2e-17
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 7/59 (11%)

Query: 472 AVALYDYQASAD-DEISFDPDDIITNIEMIDEGWWRGYCHG------QYGLFPANYVSL 523
             AL D+    D   ++    D+IT +E   +G W+G+ H       + G FP   V +
Sbjct: 21  VRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEV 79

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A Length = 67

 Score = 75.1 bits (185), Expect = 3e-17
 Identities = 14/52 (26%), Positives = 23/52 (44%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           A+      A     ++ +  DI+    M   G W G  +G+ GLFP  +V +
Sbjct: 6   AIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKI 57

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 80

 Score = 74.8 bits (184), Expect = 6e-17
 Identities = 15/63 (23%), Positives = 25/63 (39%)

Query: 463 DTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS 522
            +      + +    YQ   D EISF     +  +E  + GWW        G  P++Y+ 
Sbjct: 2   SSGSSGATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLV 61

Query: 523 LQQ 525
           L +
Sbjct: 62  LDE 64

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 74.1 bits (182), Expect = 2e-16
 Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 6/57 (10%)

Query: 471 TAVALYDYQASADDEISFDPDDIIT----NIEMIDEGWWRGYCH--GQYGLFPANYV 521
           T   +Y Y    DDE+   P D I           EGW  G     G  GL P NY+
Sbjct: 18  TLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYI 74

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic} Length = 73

 Score = 73.2 bits (180), Expect = 2e-16
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           A  L  Y A    E++    DI+T +   ++ WW+   + + G  PA YV
Sbjct: 3   APPLPPYSAG-GREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 51

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 91

 Score = 73.7 bits (181), Expect = 2e-16
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 459 GTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMI--DEGWWRG-YCHGQYGL 515
           G +      + +    LY + +  ++E++F+  + +  IE    D  WW+     GQ GL
Sbjct: 7   GLSNGQGSRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGL 66

Query: 516 FPANYVSLQQ 525
            P NYV +  
Sbjct: 67  VPKNYVVVLS 76

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 79

 Score = 72.8 bits (179), Expect = 2e-16
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 462 EDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMID----EGWWRGYCHGQYGLFP 517
             +E +      A+Y ++A   +E+S   +  +  +E  D      WW    +G+ G  P
Sbjct: 6   SGSEAEGNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVP 65

Query: 518 ANYV 521
           +NY+
Sbjct: 66  SNYI 69

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 72.7 bits (179), Expect = 2e-16
 Identities = 15/53 (28%), Positives = 24/53 (45%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           G     LYD+ A   +E+S   D+++  +E   + W      GQ G  P N +
Sbjct: 7   GKYVKILYDFTARNANELSVLKDEVLEVLEDGRQWWKLRSRSGQAGYVPCNIL 59

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 72.8 bits (179), Expect = 3e-16
 Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 8/59 (13%)

Query: 471 TAVALYDYQAS-------ADDEISFDPDDIITNIEMIDE-GWWRGYCHGQYGLFPANYV 521
             +A  DY              ++    D++     +D+ G++ G   G  GL PA+ +
Sbjct: 9   IMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLL 67

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens} Length = 68

 Score = 72.3 bits (178), Expect = 3e-16
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 461 NEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRG-YCHGQYGLFPAN 519
           +E  +   G   +A+ D+ A    +++F   +I+  IE   +GWW      G  GL P  
Sbjct: 2   SESHKWSTGEEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRT 61

Query: 520 YV 521
           Y+
Sbjct: 62  YL 63

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus} Length = 142

 Score = 74.7 bits (183), Expect = 3e-16
 Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEM-IDEGWWRGYCHGQYGLFPANYVS 522
           TA A YD+ A    E+S    DII  +     +GWWRG  +G+ G FP+NYV 
Sbjct: 7   TAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVE 59

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A Length = 67

 Score = 72.3 bits (178), Expect = 3e-16
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC-HGQYGLFPANYV 521
               VALYDY     +++     D    +E  +  WWR    +GQ G  P+NYV
Sbjct: 8   LKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYV 61

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A 1qwf_A 1prl_C ... Length = 84

 Score = 72.8 bits (179), Expect = 3e-16
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRG--YCHGQYGLFPANYV 521
           VALYDY A+   ++SF   +    +E     WW       G+ G  P+NYV
Sbjct: 10  VALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYV 60

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 71.9 bits (177), Expect = 4e-16
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMID-EGWWRGY-CHGQYGLFPANYVSLQQ 525
           G   VA+Y ++ S++  IS    + ++ +E    +GW R     G  G  P +Y+ +  
Sbjct: 7   GGHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYLRVTS 65

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 97

 Score = 73.0 bits (179), Expect = 4e-16
 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 9/75 (12%)

Query: 456 RQQGTNEDTEEDLGYTAVALYDYQA--------SADDEISFDPDDIITNIEMIDE-GWWR 506
              GT+   EE      VAL+DY          +A++E+ F    II      D  G++R
Sbjct: 4   GSSGTDPGAEELPARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYR 63

Query: 507 GYCHGQYGLFPANYV 521
           G    + GL P N V
Sbjct: 64  GETCARLGLIPCNMV 78

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A Length = 65

 Score = 71.6 bits (176), Expect = 5e-16
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 8/58 (13%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWR--------GYCHGQYGLFPANYV 521
            +ALYDYQ  +  E++    DI+T +   ++ WW+        G  + + G  PA YV
Sbjct: 4   VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYV 61

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A Length = 71

 Score = 71.5 bits (176), Expect = 5e-16
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 470 YTAVALYDYQASADDEISFDPDDIITNIEMI--DEGWWRG-YCHGQYGLFPANYVSLQQ 525
           +    LY + +  ++E++F+  + +  IE    D  WW+     GQ GL P NYV +  
Sbjct: 7   HVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLS 65

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1 Length = 67

 Score = 71.1 bits (175), Expect = 7e-16
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC-HGQYGLFPANYVSLQQ 525
             VA+YD+QA+   ++  +       +E  D  WWR    +G  G  P+NYV+ ++
Sbjct: 4   IVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKK 59

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 75.0 bits (184), Expect = 8e-16
 Identities = 13/51 (25%), Positives = 27/51 (52%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           T  A+ DY+ ++  E++    D++  +E  + GWW      + G  PA+++
Sbjct: 13  TYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFL 63

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 74.3 bits (182), Expect = 1e-15
 Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 2/103 (1%)

Query: 421 EENQKLLLKKQQEEDRLKAEEQAR--LLEQERLMEELRQQGTNEDTEEDLGYTAVALYDY 478
                + + ++ E      + +A+   +    L        T +      G   VA+  Y
Sbjct: 31  STGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDETEDPEPNYAGEPYVAIKAY 90

Query: 479 QASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
            A   DE+S    + +  I  + +GWW        G FP+ Y+
Sbjct: 91  TAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYL 133

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A Length = 58

 Score = 70.7 bits (174), Expect = 9e-16
 Identities = 13/54 (24%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 471 TAVALYDYQASAD-DEISFDPDDIITNIEMIDEGWWRG--YCHGQYGLFPANYV 521
              A YD+  S    E+     D+I        GW  G      + G  P  Y+
Sbjct: 2   MFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYM 55

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 71.2 bits (175), Expect = 1e-15
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 463 DTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMID-EGWWRG-YCHGQYGLFPANY 520
            T  +   T   +Y Y+AS  DE++ +  +++  IE  D E W +     GQ G  P  Y
Sbjct: 7   GTLRNYPLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKY 66

Query: 521 V 521
           +
Sbjct: 67  L 67

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 70.8 bits (174), Expect = 1e-15
 Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 457 QQGTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRG--YCHGQYG 514
             G    + +           + A   DE++    D++  ++  ++GW  G     G+ G
Sbjct: 5   SSGWQGLSSKGDLPQVEITKAFFAKQADEVTLQQADVVLVLQ-QEDGWLYGERLRDGETG 63

Query: 515 LFPANYV 521
            FP ++ 
Sbjct: 64  WFPEDFA 70

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens} Length = 68

 Score = 70.4 bits (173), Expect = 1e-15
 Identities = 10/53 (18%), Positives = 22/53 (41%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           G     LY+++A    E++    + +  ++     W      G+ G  P+N +
Sbjct: 7   GLKMQVLYEFEARNPRELTVVQGEKLEVLDHSKRWWLVKNEAGRSGYIPSNIL 59

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 70.5 bits (173), Expect = 1e-15
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 9/62 (14%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRG---------YCHGQYGLFPAN 519
           G   VAL+DYQA   +++SF   D +  ++   EGWW                 G  P+N
Sbjct: 7   GQYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSN 66

Query: 520 YV 521
           YV
Sbjct: 67  YV 68

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1 Length = 71

 Score = 70.4 bits (173), Expect = 2e-15
 Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMI-DEGWWRG-YCHGQYGLFPANYVSLQQ 525
           G   +A Y++  +A+ ++ F   D++T + +  D  W++     G+ G+ PANYV  ++
Sbjct: 11  GTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKRE 69

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A Length = 65

 Score = 70.1 bits (172), Expect = 2e-15
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 472 AVALYDYQASAD-DEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYV 521
             A+  Y    D DEISF   D+      +++GW         + GL   + V
Sbjct: 8   VRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLV 60

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} Length = 67

 Score = 70.0 bits (172), Expect = 2e-15
 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 4/57 (7%)

Query: 469 GYTAVALYDYQAS-ADDEISFDPDDIIT-NIEMIDEGWWRGYCH--GQYGLFPANYV 521
                A++ + A      +SF   D+IT  +    +GW  G        G FP +Y 
Sbjct: 7   RMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYT 63

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B Length = 115

 Score = 71.7 bits (175), Expect = 2e-15
 Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 15/80 (18%)

Query: 457 QQGTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIIT-----NIEMIDEGWWRGY--- 508
                 D      +   A +DY A+  DE+     D++      N E  DEGW  G    
Sbjct: 32  TTTGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKES 91

Query: 509 -------CHGQYGLFPANYV 521
                       G+FP N+ 
Sbjct: 92  DWNQHKELEKCRGVFPENFT 111

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score = 76.2 bits (186), Expect = 2e-15
 Identities = 12/77 (15%), Positives = 26/77 (33%)

Query: 447 EQERLMEELRQQGTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWR 506
           E     +              +    +      A     ++ +  +++   ++   G W 
Sbjct: 217 EPGPYAQPSVNTPLPNLQNGPIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWE 276

Query: 507 GYCHGQYGLFPANYVSL 523
           G C+G+ G FP  +V L
Sbjct: 277 GECNGKRGHFPFTHVRL 293

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score = 58.4 bits (140), Expect = 2e-09
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 476 YDYQASADDEISFDPDDIITNIEMIDEGWWRG-YCHGQYGLFPANYV 521
           +D+  + ++++ F   DI+   +  +E WW      G+ G+ P  YV
Sbjct: 141 FDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 187

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A Length = 79

 Score = 69.7 bits (171), Expect = 3e-15
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRG--YCHGQYGLFPANYV 521
            ALYDY+A  +D++SF   +    +   +  WW       G+ G  P+ Y+
Sbjct: 9   EALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYL 59

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A Length = 108

 Score = 70.6 bits (173), Expect = 4e-15
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH---GQYGLFPANYVSL 523
           A+ LYD++A   DE++    + +      +  W+        G  GL P  +VS+
Sbjct: 8   AIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSI 62

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus} Length = 120

 Score = 70.7 bits (173), Expect = 4e-15
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH---GQYGLFPANYVSLQ 524
           AV LY+++A  DDE+   P + ++     D  W+        G  GL P +YV + 
Sbjct: 6   AVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRII 61

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A Length = 60

 Score = 68.0 bits (167), Expect = 8e-15
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 472 AVALYDYQASADDEISFDPDDIITNI-EMIDEGWWRGYCH--GQYGLFPANYV 521
            +  YD+ A + DE++    D +  + +   + WW       G+ GL PA ++
Sbjct: 5   GIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFI 57

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 69

 Score = 67.8 bits (166), Expect = 1e-14
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 7/59 (11%)

Query: 472 AVALYDYQAS-ADDEISFDPDDIITNIEMID-----EGWWRGYC-HGQYGLFPANYVSL 523
           A ALYD+     + E++    D++  +   D       WW+    +G  G  P NY+ +
Sbjct: 10  ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEI 68

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 72

 Score = 67.8 bits (166), Expect = 1e-14
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 465 EEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWW-----RGYCHGQYGLFPAN 519
           +  LG   V L+D+++  D+E+SF   D+       ++ WW             G  P N
Sbjct: 6   QAHLGPKYVGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPHN 65

Query: 520 YVSLQQ 525
           Y++ ++
Sbjct: 66  YLAERE 71

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 67.8 bits (166), Expect = 1e-14
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMI-DEGWWRGYCH--GQYGLFPANYV 521
           G   +   ++      E++F   D++T +E   ++ W+R   H  GQ GL  A  +
Sbjct: 17  GTQCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGAL 72

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus} Length = 109

 Score = 69.0 bits (169), Expect = 1e-14
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRG--YCHGQYGLFPANYV 521
           VALYDY+A   +++SF   +    I   +  WW       G+ G  P+NYV
Sbjct: 31  VALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYV 81

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans} Length = 174

 Score = 70.2 bits (171), Expect = 3e-14
 Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 1/80 (1%)

Query: 446 LEQERLMEELRQQGTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWW 505
           L     M  L +       ++ +    V  + +    + ++ F+  + +  +   ++ WW
Sbjct: 95  LLNHFKMRVLTEASLLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWW 154

Query: 506 RG-YCHGQYGLFPANYVSLQ 524
                 G  GL PANYV +Q
Sbjct: 155 EARNALGTTGLVPANYVQIQ 174

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens} Length = 119

 Score = 68.2 bits (166), Expect = 3e-14
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 4/57 (7%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC---HGQYGLFPANYVSLQQ 525
            VA+Y++Q S   ++S    D++   E     W+RGY        G+FP +++ +++
Sbjct: 62  GVAIYNFQGSGAPQLSLQIGDVVRIQET-CGDWYRGYLIKHKMLQGIFPKSFIHIKE 117

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 80

 Score = 66.3 bits (162), Expect = 6e-14
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 7/59 (11%)

Query: 472 AVALYDYQAS-ADDEISFDPDDIITNIEMID-----EGWWRGY-CHGQYGLFPANYVSL 523
           A ALYD+     + E++    D++  +   D       WW+    +G  G  P NY+ +
Sbjct: 17  ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEI 75

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A Length = 86

 Score = 66.3 bits (162), Expect = 6e-14
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC--HGQYGLFPANYVSLQQ 525
               VALYDY+A   +++SF   D +  +E     WW+       + G  P+NYV+   
Sbjct: 25  DIIVVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVD 82

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 66.2 bits (162), Expect = 6e-14
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 464 TEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRG-YCHGQYGLFPANYV 521
             E      +ALYDYQ +   E++   ++    ++  +  WWR    +G  G  P++Y+
Sbjct: 14  LWEPEETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYL 72

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1 Length = 72

 Score = 65.8 bits (161), Expect = 6e-14
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 469 GYTAVALYDYQASAD-DEISFDPDDIIT-NIEMIDEGWWRGYCH--GQYGLFPANYV 521
           G     ++ + A  +   +SF   D++T  I    +GW  G        G FP++Y 
Sbjct: 7   GQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYT 63

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A Length = 63

 Score = 65.3 bits (160), Expect = 7e-14
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 466 EDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEG-WWRGYCHGQYGLFPANYV 521
           E+     VALYD+ AS D+ +S    + +  +     G W         G  P+ Y+
Sbjct: 2   ENDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYI 58

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A Length = 77

 Score = 65.5 bits (160), Expect = 1e-13
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 465 EEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRG-YCHGQYGLFPANYV 521
           +E      +ALYDYQ +   E++   D+    ++  +  WWR    +G  G  P++Y+
Sbjct: 16  QEPEETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYL 73

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score = 70.6 bits (172), Expect = 1e-13
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRG-YCHGQYGLFPANYVSLQQ 525
            V  + +    + ++ F+  + +  +   ++ WW      G  GL PANYV +Q 
Sbjct: 150 VVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQIQM 204

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score = 64.8 bits (157), Expect = 1e-11
 Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 2/74 (2%)

Query: 452 MEELRQQGTNEDTEEDLGYTAVALYDYQASADD--EISFDPDDIITNIEMIDEGWWRGYC 509
                    N + +  L   A   +D   +A D  ++       +   + +  G ++   
Sbjct: 230 FSSASTSSDNIELQPRLPAKAKVTFDRVPNAYDPTQLRVKKGQTVLVTQKMSNGMYKAEL 289

Query: 510 HGQYGLFPANYVSL 523
            GQ G  P  Y+  
Sbjct: 290 DGQIGSVPHTYLRF 303

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae} Length = 71

 Score = 64.6 bits (158), Expect = 2e-13
 Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNI-EMIDEGWWRGYCH--GQYGLFPANYVSLQQ 525
             +  YD+ A + DE++    D +  + +   + WW       G+ GL PA ++   +
Sbjct: 8   RGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVR 65

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score = 70.0 bits (170), Expect = 2e-13
 Identities = 14/54 (25%), Positives = 23/54 (42%)

Query: 470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
             A+      A     ++ +  DI+    M   G W G  +G+ GLFP  +V +
Sbjct: 240 AKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKI 293

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score = 58.1 bits (139), Expect = 2e-09
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 475 LYDYQASADDEISFDPDDIITNIEMIDEGWWRG-YCHGQYGLFPANYV 521
           LYD+  +  +++ F   +I+  IE  +E WW      G+ G+ P  YV
Sbjct: 131 LYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYV 178

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} PDB: 2kt1_A Length = 90

 Score = 64.6 bits (157), Expect = 2e-13
 Identities = 15/72 (20%), Positives = 23/72 (31%), Gaps = 17/72 (23%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMI---------------DEGWWRGYCH--G 511
           G+   ALY ++    +++   P D++                       GW  G      
Sbjct: 11  GFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTR 70

Query: 512 QYGLFPANYVSL 523
           Q G FP  YV  
Sbjct: 71  QRGDFPGTYVEF 82

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1 Length = 63

 Score = 63.9 bits (156), Expect = 3e-13
 Identities = 11/39 (28%), Positives = 20/39 (51%)

Query: 483 DDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
             E++    DI+T +   ++ WW+   + + G  PA YV
Sbjct: 3   PREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 41

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 96

 Score = 64.5 bits (157), Expect = 3e-13
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 8/60 (13%)

Query: 470 YTAVALYDYQ------ASADDEISFDPDDIITNIEMIDE-GWWRG-YCHGQYGLFPANYV 521
           +  VA Y Y        + + E+       +     +DE G++ G    GQ GL P+N+V
Sbjct: 18  HLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFV 77

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A Length = 62

 Score = 63.5 bits (155), Expect = 3e-13
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC--HGQYGLFPANYV 521
           +AL+ Y+ S D ++ F+  + +  +E   E WW+      GQ G  P N+V
Sbjct: 10  IALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFV 59

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens} Length = 341

 Score = 69.6 bits (169), Expect = 5e-13
 Identities = 25/159 (15%), Positives = 54/159 (33%)

Query: 367 EEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKL 426
           EE      +          L  K  +  +Q   +     +    +           ++ +
Sbjct: 72  EERFGPDSKSSALAXTLPTLPAKVYVGVKQEIAEMRIPALNAYMKSLLSLPVWVLMDEDV 131

Query: 427 LLKKQQEEDRLKAEEQARLLEQERLMEELRQQGTNEDTEEDLGYTAVALYDYQASADDEI 486
            +   Q     +   QA    + R  +           +      A AL+D+  ++  E+
Sbjct: 132 RIFFYQSPYDSEQVPQALRRLRPRTRKVKSVSPQGNSVDRMAAPRAEALFDFTGNSKLEL 191

Query: 487 SFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQQ 525
           +F   D+I  +  I++ W  G   G  G+FP ++V + +
Sbjct: 192 NFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILK 230

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus} Length = 77

 Score = 63.3 bits (154), Expect = 5e-13
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 480 ASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           A    E++    DI+T +   ++ WW+   + + G  PA YV
Sbjct: 2   AMGPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 43

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens} Length = 67

 Score = 62.7 bits (153), Expect = 6e-13
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 472 AVALYDYQA-SADDEISFDPDDIIT-NIEMIDEGWWRGYCH--GQYGLFPANYV 521
              ++ + A S    +SF   D+IT  I    +GW  G        G FP++Y 
Sbjct: 9   VKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYT 62

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A Length = 92

 Score = 63.7 bits (155), Expect = 7e-13
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 7/61 (11%)

Query: 472 AVALYDYQAS-ADDEISFDPDDIITNIEMID-----EGWWRGY-CHGQYGLFPANYVSLQ 524
           A ALYD+     + E++    D++  +   D       WW+    +G  G  P NY+ + 
Sbjct: 17  ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII 76

Query: 525 Q 525
           +
Sbjct: 77  K 77

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A Length = 68

 Score = 61.9 bits (151), Expect = 1e-12
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYVSL 523
               +  YD+QA    E+S    D++  ++   + WW+     GQ G  P N ++ 
Sbjct: 8   LKWVLCNYDFQARNSSELSVKQRDVLEVLDDSRK-WWKVRDPAGQEGYVPYNILTP 62

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 62.1 bits (151), Expect = 1e-12
 Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 3/67 (4%)

Query: 457 QQGTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRG--YCHGQYG 514
             G   + E         L DY +       F   + +  I   + GWW+      G+  
Sbjct: 5   SSGPLPNPEGLDSDFLAVLSDYPSPDISPPIFRRGEKLRVISD-EGGWWKAISLSTGRES 63

Query: 515 LFPANYV 521
             P   V
Sbjct: 64  YIPGICV 70

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A Length = 69

 Score = 61.9 bits (151), Expect = 1e-12
 Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 471 TAVALYDYQAS-ADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYV 521
              A YD+  S +  E+     DI+        GW         + G  P  Y+
Sbjct: 4   KFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYM 57

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 64.3 bits (156), Expect = 6e-12
 Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEM-IDEGWWRGYCHGQYGLFPANYVSLQQ 525
            A+A YD++A+ADDE+SF   DI+  +    D+ W++   +G+ G  P NY+ ++ 
Sbjct: 2   EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKP 57

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 61.2 bits (148), Expect = 6e-11
 Identities = 22/52 (42%), Positives = 29/52 (55%)

Query: 470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
               AL+D+    D E+ F   D I  ++  D  WW+G CHGQ G+FP NYV
Sbjct: 159 TYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 210

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 67.1 bits (164), Expect = 9e-12
 Identities = 31/178 (17%), Positives = 70/178 (39%), Gaps = 29/178 (16%)

Query: 269  LRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKKL 328
            L  K   L ++ +E++++     ++   L+     E  +KL    +  L++ EEE +   
Sbjct: 926  LENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTET-EKLRS-DVERLRMSEEEAKNAT 983

Query: 329  NGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKEL-- 386
            N                 V S+ ++     I        + + EK+ + +   K K    
Sbjct: 984  N----------------RVLSLQEE-----IAKLRKELHQTQTEKKTIEEWADKYKHETE 1022

Query: 387  ERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQE----ENQKLLLKKQQEEDRLKAE 440
            +   EL+++   +K E+E + ++   + KE  E        +   L+    ++RL+ +
Sbjct: 1023 QLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 33/193 (17%), Positives = 72/193 (37%), Gaps = 31/193 (16%)

Query: 278  KQTEEESRKRSEEEKEKRKLKDQI-DLEQAQKLEERRLSELKIKEEEIEKKLNGHSDVPL 336
            K+ + E+R     +K    L+++I  L++    + +    L  K   +E   +       
Sbjct: 907  KKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYST------ 960

Query: 337  SPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQ 396
                          L+        ++ S +E +    + +  +E   K  +   + + E+
Sbjct: 961  ----------ETEKLRSDVER---LRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEK 1007

Query: 397  IRIKEEQENIKKKKEQEEKERKEQE-----ENQKLLLKKQQEEDRLKAEEQARLLEQERL 451
              I+E  +  K + EQ   E KEQ      E ++L  +   +   +    + +L+E+ + 
Sbjct: 1008 KTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQ 1067

Query: 452  M------EELRQQ 458
            +      E LR Q
Sbjct: 1068 LELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 62.8 bits (153), Expect = 2e-10
 Identities = 33/198 (16%), Positives = 71/198 (35%), Gaps = 36/198 (18%)

Query: 274  ENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQA--QKLEERRLSELKIKEEEIEKKLNGH 331
            E+ +   ++  R         R LK  + L+    + + +R L +LKI+   +E+     
Sbjct: 864  EHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVER----- 918

Query: 332  SDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEE 391
                                K+         +   E +  + QR + E+ K  +    E+
Sbjct: 919  -------------------YKK--------LHIGLENKIMQLQRKIDEQNKEYK-SLLEK 950

Query: 392  LEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQERL 451
            +   +I    E E ++   E+     +E +     +L  Q+E  +L+ E      E++ +
Sbjct: 951  MNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTI 1010

Query: 452  MEELRQ-QGTNEDTEEDL 468
             E   + +   E    +L
Sbjct: 1011 EEWADKYKHETEQLVSEL 1028

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 13/99 (13%), Positives = 39/99 (39%)

Query: 367 EEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKL 426
           +   +E + ++ ++  R  L R       +  +  +    +   ++E K+ K +  + + 
Sbjct: 859 QMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVER 918

Query: 427 LLKKQQEEDRLKAEEQARLLEQERLMEELRQQGTNEDTE 465
             K     +    + Q ++ EQ +  + L ++  N +  
Sbjct: 919 YKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEIT 957

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 63.2 bits (152), Expect = 1e-11
 Identities = 33/202 (16%), Positives = 52/202 (25%), Gaps = 22/202 (10%)

Query: 335 PLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEK 394
              P+    P             G P+    K    KE    V++E      E     E 
Sbjct: 15  EPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKE----VKQEQILSLFEDTFVPEI 70

Query: 395 EQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQERLMEE 454
                 +  E  +     +     ++                +  E     +       E
Sbjct: 71  SVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVNGT---VE 127

Query: 455 LRQQGTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNI-----EMIDEGWWRGY- 508
                   D      +   A +DY A+  DE+     D++  I     E  DEGW  G  
Sbjct: 128 GGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVK 187

Query: 509 ---------CHGQYGLFPANYV 521
                         G+FP N+ 
Sbjct: 188 ESDWNQHKKLEKCRGVFPENFT 209

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens} Length = 86

 Score = 59.4 bits (144), Expect = 2e-11
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 455 LRQQGTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQY 513
           L++    ++         +A +DY A  D E+    ++ +  ++   + WWR      + 
Sbjct: 17  LKKGSLVKNLHMTEEVIVIAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNAANRT 75

Query: 514 GLFPANYV 521
           G  P+NYV
Sbjct: 76  GYVPSNYV 83

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A Length = 62

 Score = 58.2 bits (141), Expect = 2e-11
 Identities = 12/40 (30%), Positives = 22/40 (55%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH 510
             +ALYDYQ  +  E++    DI+T +   ++ WW+   +
Sbjct: 23  LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVN 62

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens} Length = 486

 Score = 64.4 bits (155), Expect = 4e-11
 Identities = 56/354 (15%), Positives = 110/354 (31%), Gaps = 43/354 (12%)

Query: 215 DHVEKVDKHQSQKDDNRQVVTSSKVKDLIAANSTNASKENIKPKPNIGHVKPSNLRAKFE 274
           +  +   K Q       + V ++K     A      +            + P  L+   +
Sbjct: 133 EAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQD 192

Query: 275 NLAKQTEEESRKRSEEEKEKRKLKDQID---------LEQAQKLEERRLSELKIKEEEIE 325
            + K  ++  + + + EK  ++L               EQ Q+ EE+RL   +    E++
Sbjct: 193 KIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQ 252

Query: 326 KKLN------------------GHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKE 367
           K L+                    +D                 +  P  +      +   
Sbjct: 253 KHLDLSNVAGYKAIYHDLEQSIRAADAVEDLRWFRANHGPGMAMNWPQFEEWSADLNRTL 312

Query: 368 EEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLL 427
              ++K+      +        + L  +         N  +  + +      ++E+    
Sbjct: 313 SRREKKKATDGVTLTGINQTGDQSLPSKPSSTLNVPSNPAQSAQSQSSYNPFEDEDDTGS 372

Query: 428 LKKQQEEDRLKAEEQARLLE--------------QERLMEELRQQGTNEDTEEDLGYTAV 473
              ++++ + K        +                           ++D          
Sbjct: 373 TVSEKDDTKAKNVSSYEKTQSYPTDWSDDESNNPFSSTDANGDSNPFDDDATSGTEVRVR 432

Query: 474 ALYDYQASADDEISFDPDDIITNIEMIDE-GWWRGYC-HGQYGLFPANYVSLQQ 525
           ALYDY+    DE+SF   D +T +E  DE GW +G   +GQ GL+PANYV   Q
Sbjct: 433 ALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYVEAIQ 486

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A Length = 67

 Score = 57.6 bits (140), Expect = 4e-11
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYVSLQQ 525
               +A +DY A  D E+    ++ +  ++     WWR      + G  P+NYV  + 
Sbjct: 4   EVIVIAKWDYTAQQDQELDIKKNERLWLLDDSKT-WWRVRNAANRTGYVPSNYVERKL 60

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens} Length = 72

 Score = 55.8 bits (135), Expect = 2e-10
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYV 521
               VA +DY A  + E+    ++ +  ++     WWR      + G  P+NYV
Sbjct: 7   EVVVVAKFDYVAQQEQELDIKKNERLWLLDDSKS-WWRVRNSMNKTGFVPSNYV 59

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 55.5 bits (134), Expect = 3e-10
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 5/55 (9%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWR----GYCHGQYGLFPANYV 521
             V++ DY+   ++   F     +  +E    GWW            G  P+NY+
Sbjct: 12  VYVSIADYEGD-EETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYL 65

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A Length = 230

 Score = 59.5 bits (143), Expect = 3e-10
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRG-YCHGQYGLFPANYV 521
               AL+D+  + ++++ F   DI+   +  +E WW      G+ G+ P  YV
Sbjct: 137 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 189

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Length = 466

 Score = 61.1 bits (148), Expect = 3e-10
 Identities = 20/66 (30%), Positives = 30/66 (45%)

Query: 456 RQQGTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGL 515
            Q   NE   +     A AL+D+    D E+ F   D+I  ++  +  WW G      G 
Sbjct: 17  EQLAINELISDGSVVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGW 76

Query: 516 FPANYV 521
           FPA++V
Sbjct: 77  FPASFV 82

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A Length = 60

 Score = 54.9 bits (133), Expect = 3e-10
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYVSLQQ 525
           A + YD+ A    E+S   DD++  ++     WW+     G  G  P N + + +
Sbjct: 4   AKSKYDFVARNSSELSVMKDDVLEILD-DRRQWWKVRNASGDSGFVPNNILDIMR 57

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens} Length = 90

 Score = 54.7 bits (132), Expect = 8e-10
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWW-RGYCHGQYGLFPANYV 521
             VALYDY + + D++SF   D +  +E   E W  R     + G  P+NYV
Sbjct: 5   IVVALYDYVSWSPDDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYV 56

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 60.2 bits (146), Expect = 1e-09
 Identities = 39/206 (18%), Positives = 86/206 (41%), Gaps = 26/206 (12%)

Query: 269  LRAKFENLAKQTEEESRKRSEEEKEKRKLKDQI-DLEQAQKLEERRLSELKIKEEEIEKK 327
            L      +  + EEE  +  + + EK+K++ Q+ DLE+  + EE    +L++++   + K
Sbjct: 925  LEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGK 984

Query: 328  LNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEE-KEKQRMVQEEIKRKEL 386
                               +K +               KE +  +E+   +   +  +E 
Sbjct: 985  -------------------IKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEE- 1024

Query: 387  ERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLL 446
            E+ + L K + + +     ++ + ++EEK R+E E+ ++ L  +  +     AE QA++ 
Sbjct: 1025 EKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIA 1084

Query: 447  EQE----RLMEELRQQGTNEDTEEDL 468
            E +    +  EEL+      + E   
Sbjct: 1085 ELKAQLAKKEEELQAALARLEDETSQ 1110

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 60.2 bits (146), Expect = 1e-09
 Identities = 38/200 (19%), Positives = 88/200 (44%), Gaps = 13/200 (6%)

Query: 269  LRAKFENLAKQTEEESRKRSEEEKEKRKLKDQI-DLEQAQKLEERRLSELKIKEEEIEKK 327
            ++ +  +L +Q EEE   R + + EK     +I  +E    + E + ++L  + + +E++
Sbjct: 953  MQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEER 1012

Query: 328  LNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELE 387
            ++      L+ +        K++ K        I       +++EK R   E+IKRK   
Sbjct: 1013 VSD-----LTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRK--- 1064

Query: 388  RKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLE 447
                LE E   + E+   ++ +  + + +  ++EE  +  L + ++E   K     ++ E
Sbjct: 1065 ----LEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRE 1120

Query: 448  QERLMEELRQQGTNEDTEED 467
             E  + +L++   +E    +
Sbjct: 1121 LESHISDLQEDLESEKAARN 1140

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 58.3 bits (141), Expect = 4e-09
 Identities = 39/190 (20%), Positives = 78/190 (41%), Gaps = 17/190 (8%)

Query: 268  NLRAKFENLAKQTEEESRKRSEEEKEKRKLKDQI-DLEQAQKLEERRLSELKIKEEEIEK 326
             L  +  +L     EE  K     K K K +  I +LE   K EE+   EL+  + ++E 
Sbjct: 1008 LLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEG 1067

Query: 327  KLNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKEL 386
            + +   +       +       + LK         Q + KEEE +     +++E  +K  
Sbjct: 1068 ESSDLHEQIAELQAQ------IAELKA--------QLAKKEEELQAALARLEDETSQKNN 1113

Query: 387  ERKE--ELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQAR 444
              K+  ELE     ++E+ E+ K  + + EK++++  E  + L  + ++     A +Q  
Sbjct: 1114 ALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQEL 1173

Query: 445  LLEQERLMEE 454
                 +  ++
Sbjct: 1174 RGSDYKDDDD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 54.5 bits (131), Expect = 7e-08
 Identities = 32/195 (16%), Positives = 85/195 (43%), Gaps = 21/195 (10%)

Query: 269  LRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLE-ERRLSELKIKEEEIEKK 327
             + + +    + +E  +K ++  +EK  L++++  E     E E     L  K++E+E+ 
Sbjct: 869  TKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEI 928

Query: 328  LNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKE---KQRMVQEEIKRK 384
            L+                 +++ +++       +Q   K+ +++    ++++ +EE  R+
Sbjct: 929  LHE----------------MEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQ 972

Query: 385  ELER-KEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQA 443
            +L+  K   + +  +++++   ++ +  +  KERK  EE    L     EE+        
Sbjct: 973  KLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTK 1032

Query: 444  RLLEQERLMEELRQQ 458
               + E ++ EL  +
Sbjct: 1033 LKNKHESMISELEVR 1047

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 54.1 bits (130), Expect = 9e-08
 Identities = 36/192 (18%), Positives = 89/192 (46%), Gaps = 22/192 (11%)

Query: 269  LRAKFENLAKQTEEESRKRSEEEKEKRKLKDQI-DLEQAQKLEERRLSELKIKEEEIEKK 327
            L+ K +   +   E    R     +K++L++ + ++E   + EE R  +L+ ++++++++
Sbjct: 897  LQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQ 956

Query: 328  LNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELE 387
            +                  ++  L++  +    +Q      + K K+  ++++I   E +
Sbjct: 957  MLD----------------LEEQLEEEEAARQKLQLEKVTADGKIKK--MEDDILIME-D 997

Query: 388  RKEELEKEQIRIKEEQENIKKK-KEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLL 446
            +  +L KE+  ++E   ++     E+EEK +   +   K      + E RLK EE++R  
Sbjct: 998  QNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSR-Q 1056

Query: 447  EQERLMEELRQQ 458
            E E++  +L  +
Sbjct: 1057 ELEKIKRKLEGE 1068

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 51.8 bits (124), Expect = 5e-07
 Identities = 31/213 (14%), Positives = 84/213 (39%), Gaps = 24/213 (11%)

Query: 268  NLRAKFENLAKQTEEESRKRSEEEKEKRKLKDQ----IDLEQAQKLEERRLSELKIKEEE 323
                  E   +   ++        + + +++++      L+  +K  ++++ +L+ + EE
Sbjct: 907  LYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEE 966

Query: 324  IEKKLNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSN----------KEEEEKEK 373
             E               +   V     +K+   D + +++ N          +E      
Sbjct: 967  EEAARQ---------KLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLT 1017

Query: 374  QRMVQEEIKRKELER-KEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQ 432
              + +EE K K L + K + E     ++   +  +K +++ EK +++ E     L ++  
Sbjct: 1018 TNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIA 1077

Query: 433  EEDRLKAEEQARLLEQERLMEELRQQGTNEDTE 465
            E     AE +A+L ++E  ++    +  +E ++
Sbjct: 1078 ELQAQIAELKAQLAKKEEELQAALARLEDETSQ 1110

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 48.3 bits (115), Expect = 5e-06
 Identities = 29/101 (28%), Positives = 58/101 (57%), Gaps = 4/101 (3%)

Query: 361 IQNSNKEEEEKEKQRMVQEEIKRKELERKE--ELEKEQIRIKEEQENIKKKKEQEEKERK 418
           ++ + +EEE + K   +Q   +R++    E  ELE++  ++ EE+  +++K + E +   
Sbjct: 850 LKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYA 909

Query: 419 EQEE-NQKLLLKKQQEEDRLKAEEQARLLEQERLMEELRQQ 458
           E EE   +L  KKQ+ E+ L  E +AR+ E+E   ++L+ +
Sbjct: 910 EAEEMRVRLAAKKQELEEILH-EMEARIEEEEERSQQLQAE 949

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 37/205 (18%), Positives = 81/205 (39%), Gaps = 43/205 (20%)

Query: 268  NLRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKK 327
                + +   ++ ++   +  E E++  +L ++ +L Q +   E  L     +       
Sbjct: 861  AKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAA 920

Query: 328  LNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELE 387
                                                  K++E +E    ++  I+ +E E
Sbjct: 921  --------------------------------------KKQELEEILHEMEARIEEEE-E 941

Query: 388  RKEELEKEQIRIKEEQENIKKKKEQEEKER-KEQEENQKLLLKKQQEEDRLKA-EEQARL 445
            R ++L+ E+ +++++  +++++ E+EE  R K Q E      K ++ ED +   E+Q   
Sbjct: 942  RSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNK 1001

Query: 446  LEQER--LMEELRQQGTNEDTEEDL 468
            L +ER  L E +    TN   EE+ 
Sbjct: 1002 LTKERKLLEERVSDLTTNLAEEEEK 1026

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.4 bits (105), Expect = 8e-05
 Identities = 35/195 (17%), Positives = 85/195 (43%), Gaps = 23/195 (11%)

Query: 276  LAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKKLNGHSDVP 335
            L    +EE  +  +EE ++ K + Q    + ++LE++     + K   +++KL   ++  
Sbjct: 850  LKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNL-LQEKLQAETE-- 906

Query: 336  LSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKE 395
                             +     +  +    EE   E +  ++EE   +  ++ +  +K 
Sbjct: 907  ------------LYAEAEEMRVRLAAKKQELEEILHEMEARIEEE--EERSQQLQAEKK- 951

Query: 396  QIRIKEEQENIKKKKEQEEKER-KEQEENQKLLLKKQQEEDRLKA--EEQARLLEQERLM 452
              +++++  +++++ E+EE  R K Q E      K ++ ED +    ++  +L ++ +L+
Sbjct: 952  --KMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLL 1009

Query: 453  EELRQQGTNEDTEED 467
            EE     T    EE+
Sbjct: 1010 EERVSDLTTNLAEEE 1024

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} Length = 184

 Score = 56.3 bits (135), Expect = 2e-09
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 4/57 (7%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC---HGQYGLFPANYVSLQQ 525
            VA+Y++Q S   ++S    D++   E     W+RGY        G+FP +++ +++
Sbjct: 20  GVAIYNFQGSGAPQLSLQIGDVVRIQET-CGDWYRGYLIKHKMLQGIFPKSFIHIKE 75

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 56.6 bits (137), Expect = 2e-08
 Identities = 19/203 (9%), Positives = 50/203 (24%), Gaps = 38/203 (18%)

Query: 269  LRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKKL 328
            L+ K   + ++        +  E +      +   ++  +     L   K     ++K  
Sbjct: 833  LQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYN 892

Query: 329  NGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELER 388
                                  L+           +        +       ++ K    
Sbjct: 893  RI-----------------LKKLEN-------WATTKSVYLGSNETGDSITAVQAKLKNL 928

Query: 389  KEELEKEQIRIKEEQENIKKKKEQ-------------EEKERKEQEENQKLLLKKQQEED 435
            +    + Q    +   ++     Q             E K+    ++   +    +  ++
Sbjct: 929  EAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKN 988

Query: 436  RLKAEEQARLLEQERLMEELRQQ 458
             L AE + RL + E L       
Sbjct: 989  TLLAELE-RLQKIEDLHHHHHHH 1010

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A Length = 83

 Score = 50.1 bits (119), Expect = 3e-08
 Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 17/72 (23%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIIT---------------NIEMIDEGWWRGYCH--G 511
           GY   ALYDY+   +++I     DI+T                    + GW  GY    G
Sbjct: 5   GYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTG 64

Query: 512 QYGLFPANYVSL 523
           + G FP  YV  
Sbjct: 65  ERGDFPGTYVEY 76

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 54.4 bits (131), Expect = 5e-08
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWW--RGYCHGQYGLFPANYVSLQQ 525
           VALYDY++  + ++SF   + +  +   +  WW       GQ G  P+NYV+   
Sbjct: 6   VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 60

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 54.0 bits (129), Expect = 8e-08
 Identities = 17/101 (16%), Positives = 39/101 (38%)

Query: 362 QNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQE 421
                E     ++   + E +R E E +  LE+++I  + E E  +K+  + E      E
Sbjct: 658 VQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVE 717

Query: 422 ENQKLLLKKQQEEDRLKAEEQARLLEQERLMEELRQQGTNE 462
                  + +   +  + E +  +L+ +   + L  +   E
Sbjct: 718 STGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAE 758

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 48.7 bits (115), Expect = 5e-06
 Identities = 21/168 (12%), Positives = 52/168 (30%)

Query: 295 RKLKDQIDLEQAQKLEERRLSELKIKEEEIEKKLNGHSDVPLSPSTETPPVPVKSILKQP 354
           R     +  +   K   R +       E  E      + +P +      P     +    
Sbjct: 580 RGAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVD 639

Query: 355 TSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEE 414
                P+    ++  ++  Q  ++     +E   K E ++ +   +   E  K   + E 
Sbjct: 640 VQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEA 699

Query: 415 KERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQERLMEELRQQGTNE 462
           ++ +++    + +    +     KAE ++R        E    Q   +
Sbjct: 700 EKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLK 747

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 48.3 bits (114), Expect = 5e-06
 Identities = 35/195 (17%), Positives = 62/195 (31%), Gaps = 18/195 (9%)

Query: 268 NLRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKK 327
             R   +   +   E +    E   +    +    LEQ  +    R   L   E E  +K
Sbjct: 649 RTRDALQRSVQLAIEITTNSQEAAAKHEAQR----LEQEARGRLERQKILDQSEAEKARK 704

Query: 328 LNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMV-QEEIKRKEL 386
                        E   +   S+  + T +      S  E    E +  V Q ++K + L
Sbjct: 705 -------------ELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQAL 751

Query: 387 ERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLL 446
             + E E E+++   E E I  + + E +  K Q+       K ++  + L       L 
Sbjct: 752 AIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLA 811

Query: 447 EQERLMEELRQQGTN 461
                M+    Q   
Sbjct: 812 VAGPEMQVKLLQSLG 826

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A Length = 283

 Score = 52.1 bits (125), Expect = 1e-07
 Identities = 24/54 (44%), Positives = 31/54 (57%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQQ 525
            + +YDY A  DDE++F    II  +   D  WW+G   GQ GLFP+NYV L  
Sbjct: 5   VIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTT 58

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens} Length = 526

 Score = 52.6 bits (125), Expect = 2e-07
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYV 521
           +  +A+Y +Q    DEI  +P DII       +G+ +G     G+ GL+P+  V
Sbjct: 443 HNQIAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKV 496

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 50.2 bits (119), Expect = 3e-07
 Identities = 17/81 (20%), Positives = 39/81 (48%), Gaps = 10/81 (12%)

Query: 361 IQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQ 420
           I  +++  +E E  R  +EE +RK L+  +   K     ++E       +E+ +K+ +E 
Sbjct: 74  IAQADRLTQEPESIRKWREE-QRKRLQELDAASKVM---EQEW------REKAKKDLEEW 123

Query: 421 EENQKLLLKKQQEEDRLKAEE 441
            + Q   ++K +  +R+  + 
Sbjct: 124 NQRQSEQVEKNKINNRIADKA 144

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 44.0 bits (103), Expect = 3e-05
 Identities = 13/75 (17%), Positives = 35/75 (46%), Gaps = 8/75 (10%)

Query: 398 RIKEEQENIKK-----KKEQEEKERKEQEENQKLLLKKQQEED---RLKAEEQARLLEQE 449
           R+ +E E+I+K     +K  +E +   +   Q+   K +++ +   + ++E+  +     
Sbjct: 79  RLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINN 138

Query: 450 RLMEELRQQGTNEDT 464
           R+ ++   Q  + D 
Sbjct: 139 RIADKAFYQQPDADI 153

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 51.4 bits (123), Expect = 5e-07
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWW--RGYCHGQYGLFPANYVSLQQ 525
           T VALYDY++  + ++SF   + +  +   +  WW       GQ G  P+NYV+   
Sbjct: 87  TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 143

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592

 Score = 51.1 bits (121), Expect = 6e-07
 Identities = 33/198 (16%), Positives = 75/198 (37%), Gaps = 14/198 (7%)

Query: 269 LRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKKL 328
           L  K ++  KQ +E S  R     +      + +++     +         K ++++KK 
Sbjct: 388 LEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKY 447

Query: 329 NGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELER 388
                            P K I  +           +  +   +  + + E+ K  E+ER
Sbjct: 448 Y--------------EEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVER 493

Query: 389 KEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQ 448
            +    +       +   K ++  E+KER  QE  ++L  K + +  +L  E++  L  +
Sbjct: 494 VKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALK 553

Query: 449 ERLMEELRQQGTNEDTEE 466
            +  E+L ++G  +++  
Sbjct: 554 LQEQEQLLKEGFQKESRI 571

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 50.9 bits (122), Expect = 6e-07
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWW-RGYCHGQYGLFPANYV 521
           VALYD+ AS D+ +S    + +  +     G W         G  P+NY+
Sbjct: 47  VALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYI 96

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A* Length = 175

 Score = 47.8 bits (113), Expect = 1e-06
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWW--RGYCHGQYGLFPANY 520
             +AL+ Y+ S D ++ F+  + +  +E     WW  +    GQ G  P N+
Sbjct: 14  LVIALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNF 64

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWW--RGYCHGQYGLFPANYV 521
           VALYDY+A   +++SF   D +  +E     WW  R     + G  P+NYV
Sbjct: 12  VALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYV 61

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYV 521
           G   +A Y++  +A+ ++ F   D++T + +  +  W    +  G+ G+ PANYV
Sbjct: 11  GTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYV 65

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1 Length = 78

 Score = 43.5 bits (102), Expect = 7e-06
 Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 3/51 (5%)

Query: 474 ALYDYQASADDEISFDPDDIITNIEM-IDEGWWRG--YCHGQYGLFPANYV 521
            +     +    +  +P DI+   +   +  WW G      + G FP N V
Sbjct: 23  GIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRV 73

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 1e-05
 Identities = 75/536 (13%), Positives = 163/536 (30%), Gaps = 158/536 (29%)

Query: 110 HQHESQSDYKTG------------FGGKFGVQNDRVD-----KSAVTWDHKEVIEKHASQ 152
           H H    D++TG            F   F    D  D     KS ++   KE I+     
Sbjct: 1   HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILS---KEEIDHIIMS 57

Query: 153 KDYSSGFGGKFGVQKDRQDKSAVGWDHQEKIEKHESQKDYAKGFGGKF---GIESDRQDK 209
           KD  SG    F     +Q++       Q+ +E+   + +Y      KF    I+++++  
Sbjct: 58  KDAVSGTLRLFWTLLSKQEEMV-----QKFVEEVL-RINY------KFLMSPIKTEQRQP 105

Query: 210 SAVGWDHVEKVDKHQS--QKDDNRQVVTSSKVKDL------------------------- 242
           S +   ++E+ D+  +  Q      V        L                         
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165

Query: 243 IAANSTNASKENIKPKP-------NIGHV-KPSNLRAKFENLAKQTEEESRKRSEEEKEK 294
           +A +   + K  ++ K        N+ +   P  +    + L  Q +     RS+     
Sbjct: 166 VALDVCLSYK--VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 295 RKLKDQIDLEQAQKLEERRLSE-LKI----KEEEIEKKLNGHSDVPLSPSTETPPVPVKS 349
           +     I  E  + L+ +     L +    +  +     N    + L+    T    V  
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT----TRFKQVTD 279

Query: 350 ILKQPTSDGIPIQNSNKEEEEKEKQRMVQE--EIKRKELERK-------------EELEK 394
            L   T+  I + + +      E + ++ +  + + ++L R+             E +  
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339

Query: 395 EQIRIKE-EQENIKKKKE--------QEEKERKEQ-------EENQKL------LLKKQQ 432
                   +  N  K            E  E ++          +  +      L+    
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399

Query: 433 EEDRLKAEEQARLLEQERLMEELRQQG-TNEDTEEDLGYTAVALY-DYQASADDEIS--- 487
            +            +   ++ +L +     +  +E    +  ++Y + +   ++E +   
Sbjct: 400 IKS-----------DVMVVVNKLHKYSLVEKQPKEST-ISIPSIYLELKVKLENEYALHR 447

Query: 488 -----------FDPDDIITNIEMIDEGWWR--GYCH-------GQYGLFPANYVSL 523
                      FD DD+I      D+ ++   G+ H        +  LF   ++  
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYL--DQYFYSHIGH-HLKNIEHPERMTLFRMVFLDF 500

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A Length = 108

 Score = 43.1 bits (101), Expect = 2e-05
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 11/67 (16%)

Query: 470 YTAVALYDYQASADDEISFDPDDIIT---NIEMIDEGWWRGYCHGQY--------GLFPA 518
             AVAL DY A     ++     ++     ++     +W G   G Y        G FP+
Sbjct: 23  SMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPS 82

Query: 519 NYVSLQQ 525
           + V   Q
Sbjct: 83  SIVREDQ 89

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A Length = 70

 Score = 41.9 bits (98), Expect = 2e-05
 Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 9/58 (15%)

Query: 473 VALYDYQA------SADDEISFDPDDIITNIEM-IDEGWWRG--YCHGQYGLFPANYV 521
               +Y        +    +  +P DI+   +   +  WW G      + G FP N V
Sbjct: 8   EVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRV 65

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 45.4 bits (108), Expect = 5e-05
 Identities = 21/156 (13%), Positives = 39/156 (25%), Gaps = 34/156 (21%)

Query: 269 LRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKKL 328
            + K   L ++     +K       K       +   +    + +L  L+  + E +   
Sbjct: 872 RQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLE 931

Query: 329 NGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKEL-E 387
                                              SN +      Q          EL E
Sbjct: 932 ---------------------------------GQSNSDLLSILAQLTELNYNGVPELTE 958

Query: 388 RKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEEN 423
           RK+    +Q    +      K     E ER ++ E+
Sbjct: 959 RKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIED 994

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 44.3 bits (105), Expect = 9e-05
 Identities = 21/166 (12%), Positives = 48/166 (28%), Gaps = 30/166 (18%)

Query: 268 NLRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKK 327
           +  +  E   ++  E  R   + +K+   L  + +    +         + +   E    
Sbjct: 850 STWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDS 909

Query: 328 LNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELE 387
           +                  V++ LK        ++  + E +  E Q          +L 
Sbjct: 910 ITA----------------VQAKLKN-------LEAFDGECQSLEGQSNSDLLSILAQLT 946

Query: 388 R------KEELEKEQIRIKEEQENIKKKKEQEEKE-RKEQEENQKL 426
                   E  E++     ++   +K   E  +     E E  QK+
Sbjct: 947 ELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKI 992

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 16/91 (17%), Positives = 35/91 (38%)

Query: 361 IQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQ 420
           ++   K  E  E +   +EE  +  L+    LEKE+ ++ +  E + K +    +   + 
Sbjct: 172 VKEYEKRLERIEGELNYKEESLKARLKEMSNLEKEKEKLTKFVEYLDKVRRIFGRNGFQA 231

Query: 421 EENQKLLLKKQQEEDRLKAEEQARLLEQERL 451
              +K +   Q+  +   +E        E  
Sbjct: 232 YLREKYVPLIQKYLNEAFSEFDLPYSFVELT 262

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 418

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 17/101 (16%), Positives = 48/101 (47%)

Query: 358 GIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKER 417
            +     +  + + +  +    +++ +  E   +++K ++ +++  E   K+K Q+ K+ 
Sbjct: 297 AVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKDS 356

Query: 418 KEQEENQKLLLKKQQEEDRLKAEEQARLLEQERLMEELRQQ 458
           + + + +   +KK  E    + EE+ R  E E+   E +Q+
Sbjct: 357 EAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQR 397

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 418

 Score = 41.0 bits (95), Expect = 7e-04
 Identities = 20/117 (17%), Positives = 50/117 (42%), Gaps = 3/117 (2%)

Query: 326 KKLNGHSDVPLSPSTETPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKE 385
           +KL   +   +  +     +    + +        +    K E E E+   ++ + K ++
Sbjct: 293 RKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQK 352

Query: 386 L-ERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEE 441
           L + + EL++   ++K+  E   + KE EEK R+ ++E      +++  E +  +  
Sbjct: 353 LKDSEAELQRRHEQMKKNLE--AQHKELEEKRRQFEDEKANWEAQQRILEQQNSSRT 407

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427

 Score = 42.0 bits (98), Expect = 4e-04
 Identities = 20/109 (18%), Positives = 50/109 (45%), Gaps = 1/109 (0%)

Query: 362 QNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQE 421
              +K    +E     + E   +  +++EE+ +  ++  +E+E   K+ E+E  E+ ++ 
Sbjct: 312 DPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRL 371

Query: 422 ENQKLLLKKQQEEDRLKAEEQARLLEQERL-MEELRQQGTNEDTEEDLG 469
           +      KK+ E+ +   +++    +Q +   E L+ QG+     + L 
Sbjct: 372 KKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGSQTLK 420

>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 92

 Score = 38.0 bits (88), Expect = 6e-04
 Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 4/57 (7%)

Query: 473 VALYDYQASADDEISFDPDDIITNIE----MIDEGWWRGYCHGQYGLFPANYVSLQQ 525
            A  ++ A+ D ++S    D++  I+    M  +  W        G   ++++    
Sbjct: 21  QAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYN 77

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	525
2lx7_A	60	GAS-7, growth arrest-specific protein 7; structura	99.45
2lj0_A	65	Sorbin and SH3 domain-containing protein 1; R85FL,	99.42
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	99.4
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	99.39
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	99.38
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	99.38
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	99.38
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	99.37
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	99.37
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	99.37
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	99.37
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	99.37
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	99.36
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	99.36
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	99.35
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	99.35
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	99.35
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.35
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	99.35
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens}	99.35
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	99.35
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	99.35
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	99.35
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	99.35
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	99.35
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	99.34
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	99.34
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	99.34
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	99.34
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	99.34
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	99.33
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	99.33
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	99.33
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	99.33
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	99.32
3u23_A	65	CD2-associated protein; structural genomics, struc	99.32
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	99.32
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.31
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	99.31
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	99.31
4glm_A	72	Dynamin-binding protein; SH3 domain, DNMBP, struct	99.31
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	99.31
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	99.31
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	99.31
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	99.31
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	99.3
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	99.3
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.3
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	99.3
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	99.3
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	99.3
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	99.3
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	99.3
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	99.3
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	99.29
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	99.29
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	99.29
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	99.29
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	99.29
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	99.29
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	99.29
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	99.29
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	99.29
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	99.29
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	99.28
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	99.28
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	99.28
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	99.28
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	99.28
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	99.28
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	99.28
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	99.28
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	99.28
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	99.28
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	99.28
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	99.28
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	99.28
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	99.28
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	99.28
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	99.28
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	99.28
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	99.28
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	99.27
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	99.27
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	99.27
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	99.27
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	99.27
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	99.27
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	99.27
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	99.27
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	99.26
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	99.26
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	99.26
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	99.26
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	99.26
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	99.26
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	99.25
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.25
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	99.25
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	99.25
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	99.25
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	99.25
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.25
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.25
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	99.25
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	99.25
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	99.25
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	99.25
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	99.25
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	99.24
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	99.24
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	99.24
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	99.24
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	99.24
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	99.24
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	99.24
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	99.23
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	99.23
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	99.23
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	99.23
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	99.23
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	99.23
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	99.23
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	99.23
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	99.22
1i07_A	60	Epidermal growth factor receptor kinase substrate	99.22
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	99.21
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	99.21
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	99.21
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.21
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	99.21
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	99.2
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	99.2
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.2
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	99.2
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	99.2
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	99.19
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	99.19
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	99.19
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	99.18
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	99.18
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	99.18
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	99.18
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	99.17
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	99.17
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	99.16
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	99.16
1wxb_A	68	Epidermal growth factor receptor pathway substrate	99.16
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	99.15
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	99.15
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	99.15
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	99.15
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	99.13
2m0y_A	74	Dedicator of cytokinesis protein 1; apoptosis; NMR	99.12
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	99.12
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	99.12
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	99.11
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	99.11
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	99.11
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	99.11
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	99.1
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	99.1
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	99.1
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	99.08
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	99.07
1awj_A	77	ITK; transferase, regulatory intramolecular comple	99.04
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	99.04
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	99.0
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	98.99
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	98.97
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	98.97
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	98.97
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	98.88
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	98.86
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	98.86
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	98.85
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	98.82
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	98.82
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	98.82
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	98.81
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	98.75
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	98.73
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	98.71
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	98.17
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	98.7
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	98.67
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	98.66
1v1c_A	71	Obscurin; muscle, sarcomere, adapter, myogenesis,	98.65
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	98.63
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	98.6
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	97.95
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	98.54
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	98.53
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	98.45
1ri9_A	102	FYN-binding protein; SH3-like, helically extended,	98.38
1u3o_A	82	Huntingtin-associated protein-interacting protein;	98.37
3pvl_A	655	Myosin VIIA isoform 1; protein complex, novel fold	98.18
2gtj_A	96	FYN-binding protein; SH3, redox, signaling protein	98.08
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	98.02
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	97.98
1ug1_A	92	KIAA1010 protein; structural genomics, SH3 domain,	97.72
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	97.71
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	97.69
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	97.59
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	97.51
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	97.51
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	97.37
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	97.26
3pe0_A	283	Plectin; cytoskeleton, plakin, spectrin repeat, SH	97.15
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	96.92
3r6n_A	450	Desmoplakin; spectrin repeat, SH3 domain, cell adh	95.48
2krs_A	74	Probable enterotoxin; all beta, SH3, ENTD, CPF_058	81.95

>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}

Probab=99.45  E-value=5.8e-14  Score=110.79  Aligned_cols=56  Identities=34%  Similarity=0.749  Sum_probs=52.0

Q ss_pred             ccEEEEeccCCCCCCCC-cccCCCCeEEEEEeecCCeEEEEE-CCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDE-ISFDPDDIITNIEMIDEGWWRGYC-HGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedE-LSFskGDIItVLek~DeGWW~Gr~-~Gr~G~FPSnYVE~L  524 (525)
                      +..|+|||+|.++.+++ |+|.+||+|.|++..++|||.|++ +|+.||||+|||+.|
T Consensus         3 g~~~rAlydy~~~~~~e~Ls~~~Gd~i~v~~~~~~~Ww~g~~~~G~~G~fP~nyVe~i   60 (60)
T 2lx7_A            3 GARCRTLYPFSGERHGQGLRFAAGELITLLQVPDGGWWEGEKEDGLRGWFPASYVQLL   60 (60)
T ss_dssp             SCEEEESCCCCSCCCSSCCCCCTTCEEEBSCCCTTSCEEEECTTSCEEEECGGGEEEC
T ss_pred             CCEEEECcccCCCCCCCCccCCCCCEEEEeEecCCCeEEEEeCCCCEEEEcHHHEEEC
Confidence            46899999999998887 999999999999999999999996 799999999999976

>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A

Probab=99.42  E-value=3.4e-13  Score=107.59  Aligned_cols=56  Identities=38%  Similarity=0.727  Sum_probs=52.7

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEE--CCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC--HGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~--~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+..+++|+|.+||+|.|+...++|||.|++  +|+.||||+|||++|
T Consensus         6 ~~~~~Alydy~a~~~~ELs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~G~~P~nyVe~l   63 (65)
T 2lj0_A            6 LFSYQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKPL   63 (65)
T ss_dssp             SCEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEETTSEEEC
T ss_pred             CEEEEEceeECCCCcCCcCCCCCCEEEEeEeCCCCEEEEEECCCCCEEEEehhHeEEE
Confidence            46899999999999999999999999999999999999996  699999999999986

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A

Probab=99.40  E-value=5.3e-13  Score=102.87  Aligned_cols=57  Identities=28%  Similarity=0.634  Sum_probs=53.9

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeecC
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQQ  525 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~LQ  525 (525)
                      ...++|+|+|.+..+++|+|.+||+|.|+...+++||.|+++|+.||||++||+.++
T Consensus         4 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~l~   60 (60)
T 1w70_A            4 HMRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILK   60 (60)
T ss_dssp             SCEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEECC
T ss_pred             CcEEEECccCCcCCCCCccCCCCCEEEEEEeCCCCeEEEEECCCEEEechHHEEECC
Confidence            467999999999999999999999999999989999999999999999999999874

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}

Probab=99.39  E-value=5.5e-13  Score=101.97  Aligned_cols=56  Identities=45%  Similarity=0.848  Sum_probs=52.8

Q ss_pred             cEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeecC
Q psy194          470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQQ  525 (525)
Q Consensus       470 ~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~LQ  525 (525)
                      +.++|+|+|.+..+++|+|.+||+|.|+...+++||.|+++|+.||||++||+.+.
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   57 (58)
T 2bz8_A            2 VEAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREIK   57 (58)
T ss_dssp             CCEEESSCBCCCSTTBCCBCTTCEEEEEECCTTTEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEEECcccCCCCcCEeeECCCCEEEEEEeCCCCEEEEEECCeEEEEehHHeEEcC
Confidence            46899999999999999999999999999989999999999999999999999873

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A

Probab=99.38  E-value=7e-13  Score=102.96  Aligned_cols=58  Identities=83%  Similarity=1.497  Sum_probs=54.5

Q ss_pred             CccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeecC
Q psy194          468 LGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQQ  525 (525)
Q Consensus       468 ~g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~LQ  525 (525)
                      ....++|||+|.+...++|+|.+||+|.|+...+.+||.|+++|+.||||+|||+.++
T Consensus         8 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   65 (65)
T 3ulr_B            8 LGITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQ   65 (65)
T ss_dssp             CCSCEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECC
T ss_pred             CceEEEEEeeECCCCcCEeeEecCCEEEEEEecCCCEEEEEECCcEEEEehHHeEECC
Confidence            3568999999999999999999999999999988999999999999999999999875

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A

Probab=99.38  E-value=9.2e-13  Score=99.96  Aligned_cols=55  Identities=38%  Similarity=0.761  Sum_probs=52.4

Q ss_pred             cEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       470 ~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      +.|+|||+|.+...++|+|.+||+|.|+...+.+||.|.++|+.||||++||+.+
T Consensus         2 ~~a~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~   56 (58)
T 4e6r_A            2 IPAFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYVLEE   56 (58)
T ss_dssp             EEEEECSCBCCCSTTBCCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEEECccCCCCCCCEeeEeCCCEEEEeEcCCCCEEEEEECCcEEEEehHHEEEC
Confidence            6799999999999999999999999999998999999999999999999999865

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A

Probab=99.38  E-value=7e-13  Score=101.39  Aligned_cols=55  Identities=51%  Similarity=0.935  Sum_probs=52.0

Q ss_pred             EEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEEC--CeeeeecCCCeeecC
Q psy194          471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYVSLQQ  525 (525)
Q Consensus       471 ~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~--Gr~G~FPSnYVE~LQ  525 (525)
                      .++|||+|.+..+++|+|.+||+|.|+...+++||.|++.  |+.||||++||+.++
T Consensus         2 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   58 (58)
T 1jo8_A            2 WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLGN   58 (58)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             EEEECceECCCCCCCcccCCCCEEEEEEecCCCcEEEEECCCCCEEEechHHeEECC
Confidence            5899999999999999999999999999989999999987  999999999999875

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A

Probab=99.37  E-value=9.9e-13  Score=100.87  Aligned_cols=56  Identities=36%  Similarity=0.774  Sum_probs=53.0

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      +..++|||+|.+..+++|+|.+||+|.|+...+++||.|+++|+.||||++||+.|
T Consensus         4 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~l   59 (59)
T 2g6f_X            4 GSVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI   59 (59)
T ss_dssp             CCEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CcEEEECceeCCCCcCCcCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHHHEEEC
Confidence            46899999999999999999999999999988999999999999999999999875

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A

Probab=99.37  E-value=1.1e-12  Score=100.02  Aligned_cols=56  Identities=41%  Similarity=0.741  Sum_probs=53.1

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      +..++|||+|.+...++|+|.+||+|.|+...+++||.|+++|+.||||++||+.|
T Consensus         3 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~l   58 (58)
T 2drm_A            3 GIQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQDI   58 (58)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CcEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHHHEEEC
Confidence            56899999999999999999999999999998899999999999999999999875

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A

Probab=99.37  E-value=1.1e-12  Score=100.21  Aligned_cols=56  Identities=38%  Similarity=0.787  Sum_probs=52.8

Q ss_pred             cEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeecC
Q psy194          470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQQ  525 (525)
Q Consensus       470 ~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~LQ  525 (525)
                      ..++|||+|.+..+++|+|.+||+|.|+...+++||.|+++|+.||||++||+.+.
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   57 (58)
T 1uti_A            2 RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPMM   57 (58)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECC
T ss_pred             eEEEECccCCCCCcCCCCCCCCCEEEEEEECCCCEEEEEECCeEEEeeHHHeEEcc
Confidence            46899999999999999999999999999988999999999999999999999873

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A

Probab=99.37  E-value=1.2e-12  Score=101.65  Aligned_cols=57  Identities=30%  Similarity=0.686  Sum_probs=53.1

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEee--cCCeEEEEECCeeeeecCCCeeecC
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMI--DEGWWRGYCHGQYGLFPANYVSLQQ  525 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~--DeGWW~Gr~~Gr~G~FPSnYVE~LQ  525 (525)
                      ...++|||+|.+...++|+|.+||+|.|+...  ++|||.|+++|+.||||++||+.|+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~l~   64 (64)
T 2jte_A            6 KEYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQIS   64 (64)
T ss_dssp             SEEEEESSCBCCSSSSBCCBCTTCEEEEEESCSSSTTEEEEEETTEEEEEEGGGEEECC
T ss_pred             CEEEEECccCCccCCCccCCCCCCEEEEEECCCCCCCEEEEEECCeEEEEeHHHEEECc
Confidence            46899999999999999999999999999875  7899999999999999999999874

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}

Probab=99.37  E-value=1.4e-12  Score=100.38  Aligned_cols=56  Identities=45%  Similarity=0.817  Sum_probs=53.1

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|+|+|.+..+++|+|.+||+|.|+...+++||.|+++|+.||||++||+.|
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~l   60 (60)
T 2xmf_A            5 SPQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTKI   60 (60)
T ss_dssp             SCEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CcEEEECccCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEECCEEEEEcHHHEEEC
Confidence            46799999999999999999999999999998999999999999999999999875

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A

Probab=99.36  E-value=1e-12  Score=101.90  Aligned_cols=55  Identities=36%  Similarity=0.719  Sum_probs=52.0

Q ss_pred             cEEEEeccCCCCCCCCcccCCCCeEEEEEe-ecCCeEEEEECCeeeeecCCCeeec
Q psy194          470 YTAVALYDYQASADDEISFDPDDIITNIEM-IDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       470 ~~AvALYDYqAqsedELSFskGDIItVLek-~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      +.++|||+|.+...++|+|.+||+|.|+.. .+++||.|+++|+.||||++||+.+
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   57 (62)
T 2j6f_A            2 VDYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEI   57 (62)
T ss_dssp             CCEEECSCBCCSSTTBCCBCTTCEEEEEEECSSTTEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEEECccCCcCCcCCcCCcCCCEEEEEEecCCCCEEEEEECCcEEEechHHEEEC
Confidence            468999999999999999999999999998 7889999999999999999999886

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A

Probab=99.36  E-value=1.4e-12  Score=99.72  Aligned_cols=55  Identities=33%  Similarity=0.783  Sum_probs=52.3

Q ss_pred             cEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       470 ~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ..++|||+|.+..+++|+|.+||+|.|+...+++||.|+++|+.||||++||+.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 1zx6_A            3 EYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVKPA   57 (58)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             eEEEECceECCCCCCCccCCCCCEEEEEEecCCCEEEEEECCcEEEeeHHHEEEc
Confidence            4789999999999999999999999999998999999999999999999999875

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=1.8e-12  Score=102.46  Aligned_cols=56  Identities=23%  Similarity=0.487  Sum_probs=53.4

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|.+||+|.|+...+++||.|.++|+.||||+|||+.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   62 (68)
T 2dmo_A            7 GEAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEPV   62 (68)
T ss_dssp             SEEEEECSSCCCCSSSSCCCCTTCEEEECEECSSSCEEEEETTEEEEECSTTEEEC
T ss_pred             CCEEEECcCCCcCCcCCCCCCCCCEEEEEEeCCCCEEEEEeCCCEEEeehHHeEEC
Confidence            46899999999999999999999999999999999999999999999999999886

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A

Probab=99.35  E-value=1.2e-12  Score=103.14  Aligned_cols=55  Identities=25%  Similarity=0.414  Sum_probs=52.2

Q ss_pred             cEEEEeccCCCC--CCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          470 YTAVALYDYQAS--ADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       470 ~~AvALYDYqAq--sedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ..|+|||+|.+.  ..++|+|.+||+|.|+...+.|||.|.++|+.||||+|||+.+
T Consensus         2 ~~~~al~dy~~~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~fP~~yv~~~   58 (67)
T 2bzy_A            2 VFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIF   58 (67)
T ss_dssp             EEEEECSCBCSEEECTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             cEEEEeeeECCCCCCCCccccCCCCEEEEEEecCCCeEEEEeCCcEEEEehHHeEEC
Confidence            468999999998  9999999999999999999999999999999999999999876

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=2.3e-12  Score=102.90  Aligned_cols=57  Identities=28%  Similarity=0.584  Sum_probs=53.8

Q ss_pred             CccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          468 LGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       468 ~g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ..+.++|||+|.+...++|+|.+||+|.|+...+.+||.|+++|+.||||++||+.+
T Consensus         8 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   64 (72)
T 2dl8_A            8 EPIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVVQ   64 (72)
T ss_dssp             SCEEEEESSCBCCSSSSBCCBCTTCEEEEEEEEETTEEEEEETTEEEEECSSSEEEC
T ss_pred             CCEEEEECccCCcCCCCEeccCCCCEEEEEeecCCCEEEEEECCEEEEEchHHeEEc
Confidence            357899999999999999999999999999998899999999999999999999876

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}

Probab=99.35  E-value=1.2e-12  Score=103.36  Aligned_cols=56  Identities=20%  Similarity=0.414  Sum_probs=52.6

Q ss_pred             ccEEEEeccCCCC--CCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQAS--ADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAq--sedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+.  ..++|+|.+||+|.|+...++|||.|.++|+.||||++||+.+
T Consensus         6 ~~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~   63 (67)
T 2eyx_A            6 PIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLL   63 (67)
T ss_dssp             SCBEEECCCBCCCTTCSSBCCBCSSEEEEEEEECTTSEEEEEETTEEEEEEGGGBCCB
T ss_pred             CEEEEEeEEECCCCCCCCccccCCCCEEEEEEecCCCEEEEEECCCEEEEehHhEEEc
Confidence            3579999999999  8889999999999999999999999999999999999999876

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A

Probab=99.35  E-value=1.5e-12  Score=99.12  Aligned_cols=56  Identities=34%  Similarity=0.700  Sum_probs=52.9

Q ss_pred             cEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeecC
Q psy194          470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQQ  525 (525)
Q Consensus       470 ~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~LQ  525 (525)
                      ..++|||+|.+..+++|+|.+||+|.|+...+++||.|+++|+.||||++||+.+.
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   58 (58)
T 1sem_A            3 KFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPYN   58 (58)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTEEEEEEGGGEEECC
T ss_pred             eEEEECcCCCCCCCCCcCCCCCCEEEEEEecCCCEEEEEECCcEEEechHHeEECC
Confidence            46899999999999999999999999999988999999999999999999998863

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}

Probab=99.35  E-value=1.4e-12  Score=102.97  Aligned_cols=54  Identities=35%  Similarity=0.710  Sum_probs=51.8

Q ss_pred             EEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       471 ~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      .++|||+|.+...++|+|.+||+|.|+...+++||.|+++|+.||||+|||+.+
T Consensus         3 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~fP~~yv~~~   56 (65)
T 2nwm_A            3 AARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEVL   56 (65)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEECCTTTCEEEEETTEEEEECGGGEEEC
T ss_pred             EEEEeeeECCCCcCccCCcCCCEEEEEEecCCCEEEEEECCcEEEEehhhEEEc
Confidence            689999999999999999999999999998899999999999999999999876

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}

Probab=99.35  E-value=1.6e-12  Score=103.49  Aligned_cols=56  Identities=39%  Similarity=0.779  Sum_probs=53.1

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+..+++|+|.+||+|.|+...+++||.|+++|+.||||++||+.+
T Consensus         3 ~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   58 (68)
T 2ew3_A            3 QPCCRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEVI   58 (68)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEESSSSEEEEEETTEEEEEEGGGEEES
T ss_pred             CCEEEEeeeECCCCCCccCCCCCCEEEEEEecCCCEEEEEECCcEEEeeHHHEEEc
Confidence            35799999999999999999999999999998999999999999999999999876

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A

Probab=99.35  E-value=1.6e-12  Score=99.79  Aligned_cols=56  Identities=38%  Similarity=0.798  Sum_probs=52.2

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEee--cCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMI--DEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~--DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+..+++|+|.+||+|.|+...  +++||.|+++|+.||||++||+.|
T Consensus         3 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~l   60 (60)
T 1oot_A            3 SPKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV   60 (60)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEECCSCTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             ccEEEECccCCcCCcCEeeEcCCCEEEEEEeCCCCCCeEEEEECCEEEEEeHHHEEEC
Confidence            35799999999999999999999999999986  689999999999999999999875

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=2.7e-12  Score=104.14  Aligned_cols=59  Identities=85%  Similarity=1.500  Sum_probs=54.8

Q ss_pred             CCccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeecC
Q psy194          467 DLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQQ  525 (525)
Q Consensus       467 ~~g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~LQ  525 (525)
                      .....++|||+|.+...++|+|.+||+|.|+...+.+||.|+++|+.||||++||+.+.
T Consensus        15 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   73 (79)
T 1x69_A           15 DLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQ   73 (79)
T ss_dssp             CCCCCEEESSCCCCSSSSBCCCCTTCEEEEEEECSSSEEEEEETTEEEEEETTSEEECC
T ss_pred             CCCeEEEECccCCCCCCCCcCcCCCCEEEEeEecCCCeEEEEECCcEEEechHHEEECC
Confidence            34678999999999999999999999999999989999999999999999999998863

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A

Probab=99.35  E-value=1.7e-12  Score=98.84  Aligned_cols=56  Identities=39%  Similarity=0.870  Sum_probs=52.9

Q ss_pred             cEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeecC
Q psy194          470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQQ  525 (525)
Q Consensus       470 ~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~LQ  525 (525)
                      ..++|||+|.+..+++|+|.+||+|.|+...+++||.|+++|+.||||++||+.++
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   58 (58)
T 2vwf_A            3 TYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTAVN   58 (58)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECC
T ss_pred             eEEEECceECCCCcCCcCCCCCCEEEEEEcCCCCEEEEEECCcEEEEchHHeEECC
Confidence            46899999999999999999999999999888999999999999999999999874

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}

Probab=99.35  E-value=1.1e-12  Score=103.52  Aligned_cols=56  Identities=39%  Similarity=0.664  Sum_probs=52.7

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEee---cCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMI---DEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~---DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ++.++|||+|.+...++|+|.+||+|.|+...   +.+||.|+++|+.||||+|||+.+
T Consensus         3 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   61 (69)
T 1wyx_A            3 NVLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKIL   61 (69)
T ss_dssp             EEEEEESSCBCCSSTTBCCBCTTCEEEEEETTGGGCTTEEEEEETTEEEEEEGGGEEEE
T ss_pred             CEEEEECccCCcCCCCccCCcCCCEEEEeECCCCCCCCcEEEEECCcEEEechhhEEEC
Confidence            46899999999999999999999999999987   789999999999999999999875

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.34  E-value=9.1e-13  Score=102.00  Aligned_cols=56  Identities=30%  Similarity=0.679  Sum_probs=53.2

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      +..++|||+|.+...++|+|.+||+|.|+...+++||.|+++|+.||||++||+.+
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   60 (62)
T 1k4u_S            5 GSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDS   60 (62)
T ss_dssp             CEEEECCSCBCCCSSSBCCBCSSCEEEEEEESSSSCEEEECSSCEEEECGGGCCCS
T ss_pred             CeEEEECCCCCcCCCCCccCCCCCEEEEEEeCCCCEEEEEECCcEEEEeHHHEEEC
Confidence            46899999999999999999999999999998899999999999999999999876

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}

Probab=99.34  E-value=2.4e-12  Score=101.30  Aligned_cols=56  Identities=32%  Similarity=0.639  Sum_probs=53.3

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+..+++|+|.+||+|.|+...+.+||.|+++|+.||||++||+.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   62 (68)
T 2djq_A            7 GPRAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEVI   62 (68)
T ss_dssp             CCEEEECSCCCSCCTTCCCCCTTCEEEEEECCCSSEEEEEETTEEEEEESSSEETT
T ss_pred             ceEEEECCCCCCCCcCCccCCCCCEEEEEEecCCCEEEEEECCcEEEeehHHEEEc
Confidence            56899999999999999999999999999998899999999999999999999876

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A

Probab=99.34  E-value=2.2e-12  Score=100.26  Aligned_cols=57  Identities=33%  Similarity=0.736  Sum_probs=53.7

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeecC
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQQ  525 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~LQ  525 (525)
                      ...++|||+|.+..+++|+|.+||+|.|+...+.+||.|+++|+.||||++||+.+.
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   62 (64)
T 2ak5_A            6 QLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREIK   62 (64)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEECC
T ss_pred             CEEEEEccccCCcCcCcccCCCCCEEEEeEecCCCEEEEEECCCEEEEehHHeEEcC
Confidence            468999999999999999999999999999888999999999999999999999863

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A

Probab=99.34  E-value=1.7e-12  Score=104.59  Aligned_cols=56  Identities=27%  Similarity=0.364  Sum_probs=52.5

Q ss_pred             ccEEEEeccCCCC--CCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQAS--ADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAq--sedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+.  ..++|+|.+||+|.|+...+.+||.|+++|+.||||+|||+.+
T Consensus         9 ~~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~   66 (73)
T 2ebp_A            9 CGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDVL   66 (73)
T ss_dssp             SEEEEECSCBCCCTTCCSBCCBCSSCEEEEEECCSSSCEEEECSSCEEEECSTTEEEC
T ss_pred             ceEEEEeeccCCCCCCCCccCCCCCCEEEEEEeCCCCeEEEEECCCEEEEeHHHEEEC
Confidence            4579999999976  8999999999999999999999999999999999999999986

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=2.3e-12  Score=101.82  Aligned_cols=57  Identities=39%  Similarity=0.807  Sum_probs=53.6

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeecC
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQQ  525 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~LQ  525 (525)
                      ...++|||+|.+...++|+|.+||+|.|+...+.+||.|+++|+.||||++||+.+.
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   63 (68)
T 2dl4_A            7 GNTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQRLS   63 (68)
T ss_dssp             CCEEEESSCCCCSSTTBCCCCTTCEEEEEECCCSSEEEEECSSCEEEEETTTEEECC
T ss_pred             CCEEEEeeeECCCCcCCcCCCCCCEEEEEEeCCCCEEEEEECCcEEEEehHHeEECC
Confidence            468999999999999999999999999999888999999999999999999999873

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}

Probab=99.33  E-value=1.9e-12  Score=99.71  Aligned_cols=55  Identities=29%  Similarity=0.576  Sum_probs=52.0

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeee
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL  523 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~  523 (525)
                      ...++|||+|.+...++|+|.+||+|.|+...+++||.|+++|+.||||++||+.
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~   60 (60)
T 2gnc_A            6 PEFAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIVV   60 (60)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEEETTEEEEEEGGGEEC
T ss_pred             CEEEEECCCCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEECCeEEEEeHhhEEC
Confidence            4689999999999999999999999999999889999999999999999999973

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}

Probab=99.33  E-value=2e-12  Score=98.61  Aligned_cols=56  Identities=32%  Similarity=0.536  Sum_probs=52.3

Q ss_pred             cEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEEC--CeeeeecCCCeeecC
Q psy194          470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYVSLQQ  525 (525)
Q Consensus       470 ~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~--Gr~G~FPSnYVE~LQ  525 (525)
                      ..++|||+|.+..+++|+|.+||+|.|+...++|||.|++.  |+.||||++||+.++
T Consensus         2 ~~~~al~d~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~~   59 (59)
T 1yn8_A            2 QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQ   59 (59)
T ss_dssp             EEEEECSCBCCCSTTBCCBCTTCEEEEEEEEETTEEEEECTTSSCEEEEEGGGEEECC
T ss_pred             CEEEECccCCCCCCCCcCCCCCCEEEEEEcCCCCeEEEEECCCCCEEEEehHHeEECC
Confidence            57899999999999999999999999999999999999964  899999999999875

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...

Probab=99.33  E-value=2.4e-12  Score=98.89  Aligned_cols=56  Identities=29%  Similarity=0.621  Sum_probs=53.1

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|+|+|.+...++|+|.+|++|.|+...+.+||.|+++|+.||||++||+.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~g~~G~~P~~yv~~~   61 (62)
T 3ngp_A            6 KELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKKL   61 (62)
T ss_dssp             CCEEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CEEEEECcCCCCCCCCCccCCCCCEEEEeEecCCCeEEEEECCEEEEEEHHHEEEC
Confidence            45799999999999999999999999999998899999999999999999999876

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A

Probab=99.33  E-value=2.4e-12  Score=101.48  Aligned_cols=56  Identities=27%  Similarity=0.621  Sum_probs=52.1

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECC-----eeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHG-----QYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~G-----r~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+..+++|+|.+||+|.|+...+.+||.|++.+     +.||||+|||+.+
T Consensus         7 ~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~~~~G~fP~~yv~~~   67 (68)
T 1tg0_A            7 PFKVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVAVQ   67 (68)
T ss_dssp             SEEEEESSCBCCSCTTBCCBCTTCEEEEEEECSSSEEEEEEECTTSCEEEEEEEGGGEEEC
T ss_pred             CEEEEECeeECcCCcCCCCCCCCCEEEEEEecCCCeEEEEECCCCCCCEEEEEchHHEEEC
Confidence            4689999999999999999999999999999899999999765     9999999999875

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A

Probab=99.32  E-value=2.8e-12  Score=100.77  Aligned_cols=56  Identities=34%  Similarity=0.714  Sum_probs=53.4

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|.+||+|.|+...+.+||.|+++|+.||||++||+.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~   62 (68)
T 2dl3_A            7 GRPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIELL   62 (68)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSTTEEEEECSSCEEEEETTTEEEC
T ss_pred             CcEEEECccCCCCCcCCccCCCCCEEEEeEecCCCEEEEEECCCEEEEchHHEEEC
Confidence            57899999999999999999999999999988899999999999999999999876

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A

Probab=99.32  E-value=2.8e-12  Score=99.18  Aligned_cols=57  Identities=33%  Similarity=0.725  Sum_probs=53.1

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeecC
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQQ  525 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~LQ  525 (525)
                      ...++|||+|.+...++|+|.+||+|.|+...+.+||.|+++|+.||||++||+.+.
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~   63 (65)
T 3u23_A            7 KRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELE   63 (65)
T ss_dssp             -CEEEECSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEEETTEEEEEEGGGEEECC
T ss_pred             CeEEEEeeeeCCCCcCCcCCCCCCEEEEEEecCCCEEEEEECCCEEEeehHHEEECc
Confidence            357999999999999999999999999999988999999999999999999999873

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A

Probab=99.32  E-value=2.8e-12  Score=102.48  Aligned_cols=55  Identities=38%  Similarity=0.777  Sum_probs=51.8

Q ss_pred             cEEEEeccCCCCCCCCcccCCCCeEEEEEee--cCCeEEEEECCeeeeecCCCeeec
Q psy194          470 YTAVALYDYQASADDEISFDPDDIITNIEMI--DEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       470 ~~AvALYDYqAqsedELSFskGDIItVLek~--DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ..++|||+|.+..+++|+|.+||+|.|+...  +++||.|+++|+.||||+|||+.+
T Consensus         3 ~~~~Alydy~a~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~g~~G~~P~~yV~~~   59 (69)
T 2ydl_A            3 DYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLL   59 (69)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEESCCSSTTEEEEEETTEEEEEEGGGEEEC
T ss_pred             cEEEEcccCCCCCCCccccCCCCEEEEEEcCCCCCCEEEEEECCcEEEecHHHEEEC
Confidence            4689999999999999999999999999985  789999999999999999999876

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=4.6e-12  Score=101.18  Aligned_cols=56  Identities=38%  Similarity=0.680  Sum_probs=52.4

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEe---ecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEM---IDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek---~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|.+||+|.|+..   .+.+||.|+++|+.||||++||+.+
T Consensus         8 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   66 (73)
T 2dl7_A            8 VCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEEL   66 (73)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEECCCSSSSSCEEEEETTEEEEECSSSEEEC
T ss_pred             CEEEEECccCCcCCCCcCCCCCCCEEEEEECCCCCCCCcEEEEECCCEEEEChHHEEEC
Confidence            4689999999999999999999999999997   4789999999999999999999886

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=2.7e-12  Score=101.43  Aligned_cols=56  Identities=43%  Similarity=0.774  Sum_probs=53.1

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEee---cCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMI---DEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~---DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+..+++|+|.+||+|.|+...   +++||.|+++|+.||||++||+.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   65 (71)
T 2cre_A            7 GLLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQIL   65 (71)
T ss_dssp             CEEEEESSCCCCSSSSBCCCCSSCCEEEEESCCTTSTTEEEEESSSCCEEEETTTEEEC
T ss_pred             cEEEEECcccCcCCCCCCCCCCCCEEEEeEcCCCCCCCcEEEEECCCEEEEehHHEEEC
Confidence            57899999999999999999999999999987   889999999999999999999876

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=4.4e-12  Score=103.44  Aligned_cols=56  Identities=27%  Similarity=0.454  Sum_probs=53.3

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      +..++|||+|.+..+++|+|.+||+|.|+...+++||.|+++|+.||||++||+.+
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~g~~G~~P~~yv~~~   63 (80)
T 2ekh_A            8 ATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLVLD   63 (80)
T ss_dssp             CEEEEECSCBCCSSTTSCCBCTTCEEEEEEECTTSEEEEEETTEEEEEETTTEECC
T ss_pred             CCEEEECCCCCCCCCCccCcCCCCEEEEEEeCCCCeEEEEECCCEEEEEhHHeEEC
Confidence            56899999999999999999999999999999999999999999999999999876

>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}

Probab=99.31  E-value=3.3e-12  Score=100.84  Aligned_cols=56  Identities=34%  Similarity=0.660  Sum_probs=53.2

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|.+||+|.|+...+++||.|+++|+.||||++||+.+
T Consensus        13 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~   68 (72)
T 4glm_A           13 LTYGVALYRFQALEPNELDFEVGDKIRILATLEDGWLEGSLKGRTGIFPYRFVKLC   68 (72)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEECSTTEEEEEETTEEEEEEGGGEEEE
T ss_pred             CeEEEECccCCCCCCCcCCCCCCCEEEEEEccCCCEEEEEECCcEEEEChHHeEEC
Confidence            46799999999999999999999999999998999999999999999999999876

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}

Probab=99.31  E-value=1.2e-12  Score=103.51  Aligned_cols=55  Identities=35%  Similarity=0.747  Sum_probs=52.1

Q ss_pred             cEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       470 ~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ..++|||+|.++..++|+|.+||+|.|+...++|||.|+++|+.||||+|||+.+
T Consensus         2 ~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~   56 (65)
T 2fei_A            2 RQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKEL   56 (65)
T ss_dssp             CEEECSSCCCCCSTTBCCCCTTCEEECCCCSSSSEEEEESSSCEEEEETTTSCBC
T ss_pred             eEEEECccCCcCCcCccCCCCCCEEEEEEecCCCEEEEEECCcEEEecHHHEEEc
Confidence            4689999999999999999999999999988899999999999999999999876

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=3.1e-12  Score=103.27  Aligned_cols=56  Identities=34%  Similarity=0.679  Sum_probs=53.3

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|.+||+|.|+...+.+||.|+++|+.||||++||+.+
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   65 (76)
T 2epd_A           10 VVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITLP   65 (76)
T ss_dssp             CEEEEESSCEECSSTTBCEECTTCEEEEEEEEETTEEEEEETTEEEEEESSSEECC
T ss_pred             CEEEEECcCCCCCCCCccCCCCCCEEEEEEeCCCCEEEEEECCcEEEEehHHEEEc
Confidence            46899999999999999999999999999998899999999999999999999876

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=3.7e-12  Score=100.26  Aligned_cols=56  Identities=32%  Similarity=0.543  Sum_probs=53.2

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|.+||+|.|+...+.+||.|+++|+.||||++||+.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   62 (68)
T 1x2p_A            7 GEEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVGKH   62 (68)
T ss_dssp             CCEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEECTTCCEEEESSSEECC
T ss_pred             CCEEEECceECCCCcCCcCCCCCCEEEEEEcCCCCEEEEEECCeEEEEehHHeEEC
Confidence            46899999999999999999999999999998899999999999999999999876

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.31  E-value=2.1e-12  Score=98.31  Aligned_cols=54  Identities=31%  Similarity=0.597  Sum_probs=49.8

Q ss_pred             cEEEEeccCCCCCCCCcccCCCCeEEEEEeec-CCeEEEEE--CCeeeeecCCCeee
Q psy194          470 YTAVALYDYQASADDEISFDPDDIITNIEMID-EGWWRGYC--HGQYGLFPANYVSL  523 (525)
Q Consensus       470 ~~AvALYDYqAqsedELSFskGDIItVLek~D-eGWW~Gr~--~Gr~G~FPSnYVE~  523 (525)
                      +.++|||+|.+..+++|+|.+||+|.|+...+ ++||.|++  +|+.||||++||+.
T Consensus         2 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~~~g~~G~~P~~yv~~   58 (58)
T 1zuu_A            2 MENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIRI   58 (58)
T ss_dssp             -CCEECSCBCCCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEEC
T ss_pred             CEEEEeeeECCcCCCcccCCCCCEEEEeEcCCCCCCEEEEECCCCCEEEEEHHHEEC
Confidence            56899999999999999999999999999886 79999998  99999999999973

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}

Probab=99.30  E-value=4.2e-12  Score=97.05  Aligned_cols=54  Identities=39%  Similarity=0.784  Sum_probs=51.4

Q ss_pred             cEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeee
Q psy194          470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL  523 (525)
Q Consensus       470 ~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~  523 (525)
                      ..++|||+|.+..+++|+|.+||+|.|+...+++||.|+++|+.||||++||+.
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~   57 (58)
T 1zlm_A            4 KVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE   57 (58)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEE
T ss_pred             EEEEECccCCCCCCCCccCCCCCEEEEEEeCCCCEEEEEECCCEEEEehHHEEe
Confidence            478999999999999999999999999999889999999999999999999975

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.30  E-value=4.1e-12  Score=102.68  Aligned_cols=56  Identities=43%  Similarity=0.700  Sum_probs=53.4

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|.+||+|.|+...+.+||.|+++|+.||||++||+.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   62 (78)
T 2yuo_A            7 GRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVL   62 (78)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEE
T ss_pred             ceEEEECccCCCCCCCCccCCCCCEEEEEEecCCCEEEEEECCCEEEEehHHEEEC
Confidence            56899999999999999999999999999988999999999999999999999876

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A

Probab=99.30  E-value=4.2e-12  Score=97.97  Aligned_cols=56  Identities=43%  Similarity=0.818  Sum_probs=52.4

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeee-eecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYG-LFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G-~FPSnYVE~L  524 (525)
                      +..++|||+|.+..+++|+|.+||+|.|+...+++||.|+++|..| |||++||+.+
T Consensus         3 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~gG~~P~~yv~~~   59 (61)
T 1y0m_A            3 KSAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEM   59 (61)
T ss_dssp             CCCEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEEGGGEEEC
T ss_pred             CCEEEECcCCCcCCCCCcCCcCCCEEEEEEecCCCEEEEEECCeEEEEEChHHcEEC
Confidence            3579999999999999999999999999999889999999999887 9999999987

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A

Probab=99.30  E-value=2.5e-12  Score=97.77  Aligned_cols=55  Identities=25%  Similarity=0.625  Sum_probs=51.0

Q ss_pred             cEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEE-ECCeeeeecCCCeeec
Q psy194          470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       470 ~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr-~~Gr~G~FPSnYVE~L  524 (525)
                      ..++|||+|.+..+++|+|.+||+|.|+...+++||.|+ ++|+.||||++||+.+
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   57 (57)
T 1cka_A            2 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY   57 (57)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEC-
T ss_pred             cEEEECCcCCCCCCCCCCCCCCCEEEEEEecCCCcEEEEeCCCCEEEEeHHHEEEC
Confidence            368999999999999999999999999999889999999 8999999999999864

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=5.2e-12  Score=102.42  Aligned_cols=56  Identities=43%  Similarity=0.764  Sum_probs=53.2

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|.+||+|.|+...+++||.|+++|+.||||++||+.+
T Consensus        17 ~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~gWw~g~~~g~~G~~P~~yv~~~   72 (78)
T 2ed0_A           17 LEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVESI   72 (78)
T ss_dssp             SEEEEECSCBCCSSTTBCCBCSSCEEEEEEECSSSEEEEEETTEEEEEETTSEEEC
T ss_pred             CEEEEECccCCccCcCcccccCCCEEEEEEeCCCCEEEEEECCcEEEeChHHEEEc
Confidence            45799999999999999999999999999998999999999999999999999876

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=6.2e-12  Score=104.26  Aligned_cols=56  Identities=25%  Similarity=0.398  Sum_probs=52.3

Q ss_pred             ccEEEEeccCCCC--CCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQAS--ADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAq--sedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+.  ..++|+|.+||+|.|+...+.+||.|.++|+.||||++||+.+
T Consensus        16 ~~~~~alydy~~~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~fP~~yv~~~   73 (88)
T 2dbk_A           16 PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIF   73 (88)
T ss_dssp             CEEEEECSCBCCCTTCSSBCCBCTTCEEEEEEECTTSCEEEECSSCEEEECTTTEEEC
T ss_pred             CEEEEEcccccCCCCCCCcccCCCCCEEEEEEecCCCEEEEEeCCCEEEEehHHeEEC
Confidence            4689999999955  9999999999999999999999999999999999999999986

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*

Probab=99.30  E-value=3.2e-12  Score=98.92  Aligned_cols=55  Identities=25%  Similarity=0.503  Sum_probs=51.8

Q ss_pred             cEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEE--ECCeeeeecCCCeeec
Q psy194          470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY--CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       470 ~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr--~~Gr~G~FPSnYVE~L  524 (525)
                      ..++|||+|.+..+++|+|.+||+|.|+...+++||.|+  ++|+.||||+|||+.+
T Consensus         4 ~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~fP~~yv~~~   60 (62)
T 2fpe_A            4 QTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEV   60 (62)
T ss_dssp             CCEEECSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CEEEECccCCccCcCcCcCCCCCEEEEEEecCCCEEEEEECCCCCEEEechHHEEEC
Confidence            468999999999999999999999999998899999999  6899999999999876

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}

Probab=99.30  E-value=3.2e-12  Score=104.28  Aligned_cols=56  Identities=34%  Similarity=0.500  Sum_probs=52.7

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCC-eEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEG-WWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeG-WW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|.+||+|.|+...+.+ ||.|+++|+.||||+|||+.+
T Consensus        10 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~fP~~yv~~~   66 (80)
T 2i0n_A           10 AKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVEIL   66 (80)
T ss_dssp             CCEEEESSCBCCCSSSSCCBCSSEEEEEEEESSSSSEEEEEETTEEEEEEGGGEEEE
T ss_pred             CeEEEECCCCCcCCCCCcCCCCCCEEEEEEecCCCCEEEEEECCcEEEechHHEEEC
Confidence            56899999999999999999999999999988777 999999999999999999876

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A

Probab=99.30  E-value=4.5e-12  Score=96.95  Aligned_cols=56  Identities=23%  Similarity=0.526  Sum_probs=51.8

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEe-ecCCeEEEEE--CCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEM-IDEGWWRGYC--HGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek-~DeGWW~Gr~--~Gr~G~FPSnYVE~L  524 (525)
                      +..++|||+|.+..+++|+|.+||+|.|+.. .+++||.|++  +|+.||||++||+.|
T Consensus         2 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~l   60 (60)
T 2v1q_A            2 MERGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV   60 (60)
T ss_dssp             CCEEEECSCBCCCSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CcEEEEeeeECCCCCCCccCCCCCEEEEEeCCCCCCCEEEEECCCCCEEEEEHHHEEEC
Confidence            3579999999999999999999999999998 4889999998  899999999999875

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1

Probab=99.29  E-value=4.3e-12  Score=98.38  Aligned_cols=56  Identities=38%  Similarity=0.800  Sum_probs=52.6

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+..+++|+|.+||+|.|+...+++||.|++.|+.||||++||+..
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   60 (62)
T 1uj0_A            5 ARRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTTD   60 (62)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEESC
T ss_pred             CeEEEECccCCCCCcCCcCCCCCCEEEEEEeCCCCEEEEEECCCEEEechhHEEEe
Confidence            46899999999999999999999999999988899999999999999999999753

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}

Probab=99.29  E-value=3.6e-12  Score=101.31  Aligned_cols=56  Identities=25%  Similarity=0.490  Sum_probs=52.5

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEE--ECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY--CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr--~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|.+||+|.|+...++|||.|+  ++|+.||||++||+.+
T Consensus         6 ~~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~fP~~yv~~~   63 (71)
T 2fpf_A            6 EQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEV   63 (71)
T ss_dssp             CCCEEECSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             CeEEEECeeECccCCCcccCcCCcEEEEeEecCCCEEEEEECCCCCEEEeehHHEEEC
Confidence            4579999999999999999999999999999899999999  7899999999999876

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=4.9e-12  Score=99.73  Aligned_cols=56  Identities=41%  Similarity=0.811  Sum_probs=53.0

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+..+++|+|.+||+|.|+...+++||.|+++|+.||||++||+.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   62 (68)
T 1x2k_A            7 GKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQ   62 (68)
T ss_dssp             SEEEEESSCCCCCSTTBCCCCSSCEEEEEECSCSSEEEEESSSCEEEEETTTEEEC
T ss_pred             cEEEEECceECCCCCCcccCCCCCEEEEEEcCCCCEEEEEECCcEEEEehHHeEEc
Confidence            45799999999999999999999999999998899999999999999999999876

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A

Probab=99.29  E-value=3.6e-12  Score=98.78  Aligned_cols=56  Identities=30%  Similarity=0.626  Sum_probs=51.7

Q ss_pred             cEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEEC--------CeeeeecCCCeeecC
Q psy194          470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH--------GQYGLFPANYVSLQQ  525 (525)
Q Consensus       470 ~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~--------Gr~G~FPSnYVE~LQ  525 (525)
                      ..++|||+|.+..+++|+|.+||+|.|+...+.+||.|++.        |+.||||++||+.+.
T Consensus         2 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~~g~~~g~~G~~P~~yv~~l~   65 (65)
T 2oaw_A            2 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKLD   65 (65)
T ss_dssp             EEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEEEEEETTEEEEEEEEEEGGGEEECC
T ss_pred             cEEEEcccCCccCCCCCCCCCCCEEEEEEcCCCCEEEEEEccccCCCcCCcEEEEchHHeEEcC
Confidence            36899999999999999999999999999988999999965        899999999999863

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens}

Probab=99.29  E-value=2.2e-12  Score=106.40  Aligned_cols=56  Identities=29%  Similarity=0.630  Sum_probs=53.4

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|.+||+|.|+...++|||.|+++|+.||||++||+.+
T Consensus        18 ~~~~~Alydy~a~~~~eLsf~~Gd~I~Vl~~~~~gWw~g~~~g~~G~fP~nyV~~~   73 (79)
T 1z9q_A           18 APRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKIL   73 (79)
T ss_dssp             CCCEEESSCCCCSSTTBCCCCTTCCBCCCEESSSSEEEEEETTEEEEEEGGGEEES
T ss_pred             ceEEEEcCccCCCCCCcccccCCCEEEEeEecCCCEEEEEECCeEEEecHHHEEEC
Confidence            56799999999999999999999999999998999999999999999999999886

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}

Probab=99.29  E-value=6.4e-12  Score=100.17  Aligned_cols=56  Identities=38%  Similarity=0.757  Sum_probs=52.8

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEee--cCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMI--DEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~--DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+..+++|+|.+||+|.|+...  +.|||.|+++|+.||||++||+.+
T Consensus         9 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~   66 (73)
T 2k9g_A            9 KDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLL   66 (73)
T ss_dssp             CEEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSTTEEEEEETTEEEEEEGGGEEEC
T ss_pred             ccEEEECccCCCCCCCeeeECCCCEEEEEECCCCCCCEEEEEECCeEEEEchHHEEEC
Confidence            56899999999999999999999999999985  789999999999999999999876

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}

Probab=99.29  E-value=5.1e-12  Score=101.10  Aligned_cols=56  Identities=41%  Similarity=0.800  Sum_probs=53.3

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|.+||+|.|+...+++||.|+++|+.||||++||+.+
T Consensus        13 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~   68 (73)
T 3c0c_A           13 QPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYVQVL   68 (73)
T ss_dssp             SCEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEE
T ss_pred             CeEEEECccCCCCCCCCccCcCCCEEEEEEecCCCEEEEEECCCEEEeChHHEEEC
Confidence            46899999999999999999999999999998999999999999999999999875

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.29  E-value=5.4e-12  Score=102.82  Aligned_cols=57  Identities=33%  Similarity=0.552  Sum_probs=53.2

Q ss_pred             CccEEEEeccCCCCCCCCcccCCCCeEEEEEe--ecCCeEEEEECCeeeeecCCCeeec
Q psy194          468 LGYTAVALYDYQASADDEISFDPDDIITNIEM--IDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       468 ~g~~AvALYDYqAqsedELSFskGDIItVLek--~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ....++|||+|.+...++|+|.+||+|.|+..  .+.+||.|+++|+.||||+|||+.+
T Consensus        16 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   74 (81)
T 1x43_A           16 NNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLELL   74 (81)
T ss_dssp             CCEEEEESSCCCCSSTTBCCCCTTCEEEEECCTTCCTTEEEEEETTEEEEEEGGGEEEC
T ss_pred             CCeEEEEcccCCCCCCCcCCCCCCCEEEEEEcCCCCCCcEEEEECCCEEEEehHHEEEC
Confidence            35689999999999999999999999999998  4689999999999999999999987

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}

Probab=99.29  E-value=3.9e-12  Score=95.89  Aligned_cols=52  Identities=52%  Similarity=0.895  Sum_probs=49.1

Q ss_pred             EEEEeccCCCCCCCCcccCCCCeEEEEEeec-CCeEEEEECCeeeeecCCCee
Q psy194          471 TAVALYDYQASADDEISFDPDDIITNIEMID-EGWWRGYCHGQYGLFPANYVS  522 (525)
Q Consensus       471 ~AvALYDYqAqsedELSFskGDIItVLek~D-eGWW~Gr~~Gr~G~FPSnYVE  522 (525)
                      .++|||+|.+..+++|+|.+||+|.|+...+ ++||.|+++|+.||||++||+
T Consensus         2 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~g~~G~~P~~yv~   54 (54)
T 2a28_A            2 AMEAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK   54 (54)
T ss_dssp             EEEBCSCBCCCSTTBCCBCTTCEEEEEECCCSSSEEEEEETTEEEEEEGGGBC
T ss_pred             EEEECccCCcCCCCCccCCCCCEEEEEEecCCCCEEEEEECCeEEEeeHHHcC
Confidence            5899999999999999999999999999885 799999999999999999985

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=4e-12  Score=102.50  Aligned_cols=56  Identities=25%  Similarity=0.493  Sum_probs=52.1

Q ss_pred             ccEEEEeccCCCCC-------CCCcccCCCCeEEEEE-eecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASA-------DDEISFDPDDIITNIE-MIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqs-------edELSFskGDIItVLe-k~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+..       .++|+|.+||+|.|+. ..+.+||.|+++|+.||||+|||+.+
T Consensus         7 ~~~~~Alydy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~fP~~yv~~~   70 (75)
T 2ege_A            7 GKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLDHM   70 (75)
T ss_dssp             SEEEEESSCBCTTTTCCCSSSCCBCCBCTTCEEEEESCCCTTCEEEEESSSCEEEEETTTEEEC
T ss_pred             CcEEEECCCCCCCccccCCCCCCcceECCCCEEEEeEccCCCCEEEEEECCcEEEEChHHeEEc
Confidence            46799999999999       9999999999999997 57889999999999999999999876

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A

Probab=99.28  E-value=5.2e-12  Score=100.87  Aligned_cols=56  Identities=43%  Similarity=0.848  Sum_probs=53.2

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|.+||+|.|+...+.+||.|+++|+.||||++||+.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   62 (73)
T 2dbm_A            7 GPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEIL   62 (73)
T ss_dssp             CCEEEESSCBCCCSTTCCCBCTTCEEECCBCSSSSEEEEEETTEEEEEESSSEEES
T ss_pred             CCEEEEccccCCCCCCCccCCCCCEEEEEEecCCCEEEEEECCCEEEechHHEEEc
Confidence            46899999999999999999999999999988899999999999999999999876

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A

Probab=99.28  E-value=5.3e-12  Score=97.31  Aligned_cols=55  Identities=44%  Similarity=0.835  Sum_probs=51.6

Q ss_pred             cEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEE--CCeeeeecCCCeeec
Q psy194          470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC--HGQYGLFPANYVSLQ  524 (525)
Q Consensus       470 ~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~--~Gr~G~FPSnYVE~L  524 (525)
                      ..++|||+|.+...++|+|.+||+|.|+...+.+||.|++  +|+.||||++||+.+
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~   63 (64)
T 4f14_A            7 RTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFV   63 (64)
T ss_dssp             -CEEESSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             EEEEECeeeCCcCCCcCCCCCCCEEEEEEeCCCCeEEEEECCCCCEEEEeHHHeEEC
Confidence            4689999999999999999999999999998899999997  899999999999876

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} SCOP: b.34.2.1

Probab=99.28  E-value=6.2e-12  Score=99.88  Aligned_cols=56  Identities=30%  Similarity=0.623  Sum_probs=53.0

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|.+||+|.|+...+.+||.|+++|+.||||++||+.+
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   60 (73)
T 3thk_A            5 KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL   60 (73)
T ss_dssp             CCEEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CEEEEECcCCCcCCCCccCCCCCCEEEEEECCCCCeEEEEECCcEEEEehHHeEEC
Confidence            35799999999999999999999999999998899999999999999999999876

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A

Probab=99.28  E-value=4.6e-12  Score=99.09  Aligned_cols=55  Identities=24%  Similarity=0.349  Sum_probs=51.9

Q ss_pred             cEEEEeccCCC-CCCCCcccCCCCeEEEEEeecCCeEEEE--ECCeeeeecCCCeeec
Q psy194          470 YTAVALYDYQA-SADDEISFDPDDIITNIEMIDEGWWRGY--CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       470 ~~AvALYDYqA-qsedELSFskGDIItVLek~DeGWW~Gr--~~Gr~G~FPSnYVE~L  524 (525)
                      ..++|||+|.+ ..+++|+|.+||+|.|+...+++||.|+  ++|+.||||+|||+.+
T Consensus         6 ~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~   63 (65)
T 2j05_A            6 RRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEV   63 (65)
T ss_dssp             CEEEESSCBCCCTTSSBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             cEEEEccccCCCCCCCcCcCCCCCEEEEeEecCCCEEEEEECCCCCEEEEEhHHeEEC
Confidence            57999999999 9999999999999999999889999999  6899999999999876

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.28  E-value=4.6e-12  Score=101.93  Aligned_cols=57  Identities=32%  Similarity=0.640  Sum_probs=53.8

Q ss_pred             CccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          468 LGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       468 ~g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ....++|||+|.+...++|+|.+||+|.|+...+.+||.|+++|+.||||++||+.+
T Consensus         9 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   65 (76)
T 1ujy_A            9 HQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREI   65 (76)
T ss_dssp             CCEEEECCSCBCCSSTTSCCBCSSCCEEESSCCSSSCEEEEETTEEEEECTTTSEEC
T ss_pred             CCEEEEECccCCcCCCCcccCCCCCEEEEEEecCCCEEEEEECCCEEEechHHEEEC
Confidence            356899999999999999999999999999988899999999999999999999876

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=4.7e-12  Score=101.27  Aligned_cols=56  Identities=39%  Similarity=0.790  Sum_probs=52.3

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEee--cCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMI--DEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~--DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      +..++|||+|.+...++|+|.+||+|.|+...  +.+||.|+++|+.||||++||+.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   64 (73)
T 2dm1_A            7 GGTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEEE   64 (73)
T ss_dssp             SSEEEESSCBCCCSTTBCCBCTTCEEECCBSSSSSSSCEEEEETTEEEEECSSSEEEC
T ss_pred             CCEEEECccCCcCCCCcCCCCCCCEEEEEEecCCCCCeEEEEECCeEEEeehHHEEEc
Confidence            56899999999999999999999999999987  459999999999999999999876

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=5.2e-12  Score=102.90  Aligned_cols=57  Identities=30%  Similarity=0.598  Sum_probs=53.9

Q ss_pred             CccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          468 LGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       468 ~g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ....++|||+|.+...++|+|.+||+|.|+...+.+||.|+++|+.||||++||+.+
T Consensus         9 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   65 (81)
T 2ysq_A            9 SIVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLW   65 (81)
T ss_dssp             CCEEEEESSCCCCSSSSSCCCCTTCEEEEEECCSSSEEEEECSSCEEEEEGGGEEES
T ss_pred             CceEEEEeeeECCCCCCcCCCCCCCEEEEEEEcCcCEEEEEECCCEEEechHHEEEc
Confidence            356899999999999999999999999999998999999999999999999999886

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.28  E-value=4.6e-12  Score=100.49  Aligned_cols=56  Identities=29%  Similarity=0.669  Sum_probs=51.8

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEE-eecCCeEEEE-ECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIE-MIDEGWWRGY-CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLe-k~DeGWW~Gr-~~Gr~G~FPSnYVE~L  524 (525)
                      +..++|||+|.+..+++|+|.+||+|.|+. ..+++||.|+ ++|+.||||+|||+.+
T Consensus        11 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   68 (71)
T 1csk_A           11 GTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKR   68 (71)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSTTEEEEECTTSCEEEEETTSEEC-
T ss_pred             CCEEEEceeECcCCCCcCCCCCCCEEEEeECCCCCCCEEEEeCCCCEEEEehHHeEEc
Confidence            568999999999999999999999999999 6788999999 8999999999999875

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}

Probab=99.28  E-value=6.7e-12  Score=99.17  Aligned_cols=56  Identities=23%  Similarity=0.544  Sum_probs=52.7

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEee-cCCeEEEEE--CCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMI-DEGWWRGYC--HGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~-DeGWW~Gr~--~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+..+++|+|.+||+|.|+... ++|||.|++  +|+.||||++||+.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   64 (71)
T 2jt4_A            6 KKRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV   64 (71)
T ss_dssp             CEEEEECSCBCCSSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEEET
T ss_pred             CCEEEEcccCCCCCCCcccCCCCCEEEEEECCCCCCCEEEEECCCCCeEEechHHeEEC
Confidence            56899999999999999999999999999987 889999998  899999999999886

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=4.8e-12  Score=104.14  Aligned_cols=56  Identities=30%  Similarity=0.526  Sum_probs=52.8

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEe--ecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEM--IDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek--~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|.+||+|.|+..  .+.+||.|+++|+.||||+|||+.+
T Consensus         8 ~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~fP~~yv~~~   65 (85)
T 2dlp_A            8 SGYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQPA   65 (85)
T ss_dssp             CCEEEESSCBCCSSSSBCCBCTTCEEEECCCSCCCTTEEEEESSSCEEEEETTSEEEC
T ss_pred             CEEEEECCCCCccCcCCccCcCCCEEEEEEccCCCCCeEEEEECCEEEEechHHeEEC
Confidence            4579999999999999999999999999987  7899999999999999999999876

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D

Probab=99.28  E-value=3.1e-12  Score=98.07  Aligned_cols=56  Identities=46%  Similarity=0.838  Sum_probs=50.0

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeec-CCeEEEEEC-CeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMID-EGWWRGYCH-GQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~D-eGWW~Gr~~-Gr~G~FPSnYVE~L  524 (525)
                      +..++|||+|.+..+++|+|.+||+|.|+...+ ++||.|++. |+.||||++||+.|
T Consensus         3 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~~g~~G~~P~~yv~~l   60 (60)
T 2x3w_D            3 GVRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEAI   60 (60)
T ss_dssp             -CEEEECSCBCCSSSSBCCBCTTCEEEECSCCCSSSEEEEECSSCCEEEEEGGGEEC-
T ss_pred             CCEEEECcccCccCCCcccCCCCCEEEEEEccCCCCceEEEeCCCCEEEecHHHEEEC
Confidence            467999999999999999999999999998754 599999977 99999999999875

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1

Probab=99.28  E-value=4.4e-12  Score=100.00  Aligned_cols=56  Identities=25%  Similarity=0.617  Sum_probs=52.4

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEE-ECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr-~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+..+++|+|.+||+|.|+...+++||.|+ ++|+.||||+|||+.+
T Consensus         3 ~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   59 (65)
T 1b07_A            3 AEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY   59 (65)
T ss_dssp             CCEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEEC
T ss_pred             ceEEEECCcCCCCCCCccCCcCCCEEEEEEecCCCeEEEEECCCCEEEEChHHEeec
Confidence            3579999999999999999999999999999889999999 8999999999999864

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}

Probab=99.28  E-value=5.6e-12  Score=99.49  Aligned_cols=56  Identities=34%  Similarity=0.630  Sum_probs=53.1

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+..+++|+|.+||+|.|+...+++||.|+++|+.||||++||+.+
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   63 (69)
T 2dil_A            8 AQEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEKL   63 (69)
T ss_dssp             CCEEECCSCBCCSSSSSCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGCCBC
T ss_pred             CcEEEECccCCccCcCccCCCCCCEEEEEECCCCCEEEEEECCCEEEEehHHeEEc
Confidence            45799999999999999999999999999998899999999999999999999876

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*

Probab=99.28  E-value=5.9e-12  Score=100.00  Aligned_cols=57  Identities=32%  Similarity=0.648  Sum_probs=53.3

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEE--CCeeeeecCCCeeecC
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC--HGQYGLFPANYVSLQQ  525 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~--~Gr~G~FPSnYVE~LQ  525 (525)
                      ...++|||+|.+...++|+|.+||+|.|+...+.+||.|++  +|+.||||++||+.++
T Consensus        15 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   73 (73)
T 3h0h_A           15 VTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD   73 (73)
T ss_dssp             TCEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             CEEEEECccCCCCCCCcceEeCCCEEEEEEecCCCeEEEEECCCCCEEEEEHHHeEECC
Confidence            45799999999999999999999999999998899999997  8999999999999874

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=99.28  E-value=2.1e-12  Score=101.63  Aligned_cols=56  Identities=32%  Similarity=0.780  Sum_probs=53.1

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+..+++|+|.+||+|.|+...+++||.|+++|+.||||++||+.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   62 (68)
T 1wi7_A            7 GRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKEL   62 (68)
T ss_dssp             CCCEEESSCBCCSSTTBCCBCTTCEECCCEEEETTEEEECSTTCCEEEETTSEEEC
T ss_pred             CCEEEECccCCcCCCCCccCcCCCEEEEEEcCCCCeEEEEECCcEEEEchHHEEEC
Confidence            46799999999999999999999999999988899999999999999999999876

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A

Probab=99.28  E-value=4e-12  Score=102.46  Aligned_cols=56  Identities=32%  Similarity=0.653  Sum_probs=52.6

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECC---eeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHG---QYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~G---r~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|.+||+|.|+...+.+||.|++.+   +.||||++||+.+
T Consensus        10 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~G~~P~~yv~~~   68 (76)
T 2ed1_A           10 VRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHIL   68 (76)
T ss_dssp             CEEEEESSCCCCSSSSBCCCCSSCEEEESSCCSSSEEEEEETTCTTCEEEEEGGGEEEC
T ss_pred             CeEEEECccCCCCCcCCcCcCCCCEEEEEEecCCCEEEEEECCCCCCEEEEehHHeEEC
Confidence            5689999999999999999999999999998889999999876   9999999999886

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1

Probab=99.28  E-value=6.2e-12  Score=104.37  Aligned_cols=56  Identities=30%  Similarity=0.623  Sum_probs=53.3

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+..+++|+|.+||+|.|+...++|||.|.++|+.||||++||+.+
T Consensus        17 ~~~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~~~g~~G~~P~~yv~~~   72 (83)
T 1neg_A           17 KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL   72 (83)
T ss_dssp             CCEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             ceEEEEccccCCCCCCccccCCCCEEEEEEecCCCEEEEEECCeEEEEEHHHEEEC
Confidence            46899999999999999999999999999998899999999999999999999876

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}

Probab=99.27  E-value=7.1e-12  Score=98.97  Aligned_cols=56  Identities=32%  Similarity=0.692  Sum_probs=52.3

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECC--eeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHG--QYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~G--r~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+..+++|+|.+||+|.|+...+.+||.|++.+  +.||||++||+.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   64 (70)
T 2ecz_A            7 GGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVI   64 (70)
T ss_dssp             CBCEEESSCCCCCSTTBCCCCTTCBCEEEEEEETTEEEEEETTTTEEEEECTTTEEES
T ss_pred             CCEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCeEEEEECCCCCEEEEchHHEEEC
Confidence            5679999999999999999999999999998889999999865  9999999999886

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}

Probab=99.27  E-value=6.8e-12  Score=98.82  Aligned_cols=56  Identities=45%  Similarity=0.722  Sum_probs=52.3

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEE-CCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC-HGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~-~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|.+||+|.|+...+.+||.|++ +|+.||||+|||+.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   62 (69)
T 4esr_A            6 APTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVASE   62 (69)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEEETTEEEEEEGGGEEEH
T ss_pred             cCEEEECccCCCCCcCcCCCCCCCEEEEEEecCCCeEEEEeCCCCEEEEchHHeEEC
Confidence            45799999999999999999999999999998899999996 999999999999864

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=6e-12  Score=101.91  Aligned_cols=56  Identities=43%  Similarity=0.779  Sum_probs=53.3

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      +..++|||+|.+...++|+|.+||+|.|+...+.+||.|+++|+.||||++||+.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   62 (79)
T 2yun_A            7 GRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEEL   62 (79)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSCEEEESSSCEEEECSTTEEEE
T ss_pred             CCEEEECccCCcCCCCCcCCCCCCEEEEEEcCCCCEEEEEECCCEEEEEhHHeEEC
Confidence            56899999999999999999999999999988899999999999999999999876

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A

Probab=99.27  E-value=9.2e-12  Score=95.89  Aligned_cols=57  Identities=23%  Similarity=0.417  Sum_probs=51.7

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEee-cCCeEEEEECCeeeeecCCCeeecC
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMI-DEGWWRGYCHGQYGLFPANYVSLQQ  525 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~-DeGWW~Gr~~Gr~G~FPSnYVE~LQ  525 (525)
                      ...++|+|+|.+...++|+|.+||+|.|+... +.+||.|+++|+.||||++||+.++
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~~~~~g~~G~~P~~yv~~~~   62 (63)
T 3eg3_A            5 PNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYITPVN   62 (63)
T ss_dssp             TTEEEESSCBCCCSSSBCCBCTTCEEEEEEECTTSSEEEEEETTEEEEEEGGGEEESC
T ss_pred             CEEEEEcceECCCCCCccCCCCCCEEEEEEeCCCCCeEEEEECCCeEEEehHHeEECC
Confidence            45799999999999999999999999999954 5679999999999999999998863

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.27  E-value=6.1e-12  Score=99.52  Aligned_cols=56  Identities=39%  Similarity=0.802  Sum_probs=52.5

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEee--cCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMI--DEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~--DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+..+++|+|.+||+|.|+...  +.+||.|+++|+.||||++||+.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~   64 (70)
T 2da9_A            7 GDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLL   64 (70)
T ss_dssp             SEEEEECSCCCCSSTTBCCCCTTEEEEEEECCCSSTTEEEEECSSCEEEEEGGGEEEC
T ss_pred             CcEEEECcCCCCCCcCEeeEcCCCEEEEEECCCCCCCeEEEEECCcEEEechHHeEEC
Confidence            46899999999999999999999999999985  789999999999999999999876

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=6.7e-12  Score=104.25  Aligned_cols=57  Identities=37%  Similarity=0.753  Sum_probs=54.2

Q ss_pred             CccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          468 LGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       468 ~g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ..+.++|||+|.+..+++|+|.+||+|.|+...+++||.|+++|+.||||++||+.+
T Consensus        16 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~~P~~yv~~~   72 (88)
T 2cub_A           16 LNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVTEE   72 (88)
T ss_dssp             CCEEEEESSCCCCCSTTBCCCCTTEEEEEEEECTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CCCEEEEccccCCCCCCCcCCCCCCEEEEEEccCCCeEEEEECCcEEEEehHHEEEC
Confidence            467899999999999999999999999999998999999999999999999999876

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.27  E-value=6.3e-12  Score=105.24  Aligned_cols=56  Identities=39%  Similarity=0.702  Sum_probs=52.3

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEee--cCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMI--DEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~--DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|.+||+|.|+...  +.|||.|+++|+.||||+|||+.+
T Consensus         5 ~~~~~Alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~   62 (93)
T 1uff_A            5 SSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKM   62 (93)
T ss_dssp             CCCEEESSCBCCCSSSCCCBCTTCEEEECSSCCCSSSEEEEEETTEEEEEETTTEEEC
T ss_pred             CEEEEECccCCCCCCCCcCCCCCCEEEEeEccCCCCCEEEEEECCCEEEechHHeEEc
Confidence            45799999999999999999999999999876  789999999999999999999876

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.26  E-value=6e-12  Score=98.96  Aligned_cols=55  Identities=31%  Similarity=0.585  Sum_probs=51.9

Q ss_pred             cEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEE-ECCeeeeecCCCeeec
Q psy194          470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       470 ~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr-~~Gr~G~FPSnYVE~L  524 (525)
                      ..++|||+|.+..+++|+|.+||+|.|+...+++||.|+ .+|+.||||++||+.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   58 (67)
T 1gl5_A            3 EIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGK   58 (67)
T ss_dssp             SCEEECSCBCCSSSSBCCBCTTCEEEEEECSSSSEEEEECSSSCEEEEETTSEESS
T ss_pred             eEEEECccCCCCCCCeecCCcCCEEEEEEccCCCcEEEEECCCCEEEEEhHhEEEc
Confidence            468999999999999999999999999999889999999 6999999999999876

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A

Probab=99.26  E-value=7.3e-12  Score=99.14  Aligned_cols=56  Identities=30%  Similarity=0.650  Sum_probs=52.3

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEe--ecCCeEEEE-ECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEM--IDEGWWRGY-CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek--~DeGWW~Gr-~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|.+||+|.|+..  .+.|||.|+ ++|+.||||++||+.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   64 (71)
T 1u5s_A            6 LHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVL   64 (71)
T ss_dssp             SSEEEESSCCCCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEETTTEEEEEETTSEEEC
T ss_pred             cEEEEEcccCCCCCCCcccCCCCCEEEEEECCCCCCCCEEEEeCCCCEEEEeHHHEEEC
Confidence            4579999999999999999999999999998  678999998 8999999999999876

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.26  E-value=6.5e-12  Score=101.88  Aligned_cols=56  Identities=25%  Similarity=0.583  Sum_probs=52.5

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeec----CCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMID----EGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~D----eGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|.+||+|.|+...+    .+||.|+++|+.||||+|||+.+
T Consensus        13 ~~~~~Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   72 (79)
T 1uhc_A           13 NQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKT   72 (79)
T ss_dssp             SCCEEESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEESSSCEEEEEGGGEEEC
T ss_pred             CeEEEECccCCCCCCCccCCCCCCEEEEEECCCCCCCCCeEEEEeCCCEEEEchHHeEEC
Confidence            457999999999999999999999999999876    89999999999999999999876

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=99.26  E-value=9.7e-12  Score=100.68  Aligned_cols=56  Identities=38%  Similarity=0.820  Sum_probs=52.5

Q ss_pred             CccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeee
Q psy194          468 LGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL  523 (525)
Q Consensus       468 ~g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~  523 (525)
                      ....++|||+|.+...++|+|.+||+|.|+...+++||.|++.|+.||||++||+.
T Consensus        16 ~~~~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~~~g~~G~fP~~yV~~   71 (72)
T 2l0a_A           16 EARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFVTA   71 (72)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEECSSCEEECTTCCEEE
T ss_pred             CCeEEEECCccCCCCCCccCCCCCCEEEEEEecCCCEEEEEECCCEEEechhhCcc
Confidence            35689999999999999999999999999998889999999999999999999974

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=1e-11  Score=97.82  Aligned_cols=57  Identities=30%  Similarity=0.678  Sum_probs=52.9

Q ss_pred             CccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEE--CCeeeeecCCCeeec
Q psy194          468 LGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC--HGQYGLFPANYVSLQ  524 (525)
Q Consensus       468 ~g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~--~Gr~G~FPSnYVE~L  524 (525)
                      .+..++|||+|.+..+++|+|.+||+|.|+...+++||.|++  +|+.||||++||+.+
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~   64 (70)
T 2ct3_A            6 SGTPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPV   64 (70)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTEEEEEEEECSSSCEEEEESSSCCEEEECTTTEEET
T ss_pred             CCcEEEECccCCcCCcCCccCCCCCEEEEEEECCCCEEEEEECCCCCEEEechHHeEEC
Confidence            357899999999999999999999999999998999999997  499999999999876

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}

Probab=99.26  E-value=4.3e-12  Score=101.52  Aligned_cols=53  Identities=28%  Similarity=0.560  Sum_probs=50.2

Q ss_pred             EEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       471 ~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      .|+|||+|.+ .+++|+|.+||+|.|+...+.+||.|+++|+.||||+|||+.+
T Consensus         2 ~a~alydy~~-~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   54 (73)
T 2kxd_A            2 GAPPLPPYSA-GGREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL   54 (73)
T ss_dssp             CCCCCCSSCC-CSCCCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             eEEEeeeeCC-CCCEeeEcCCCEEEEEEecCCCEEEEEECCCEEEEehHHeEEc
Confidence            4789999998 8999999999999999998999999999999999999999876

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.25  E-value=6.3e-12  Score=99.20  Aligned_cols=56  Identities=39%  Similarity=0.732  Sum_probs=52.3

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCee-eeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQY-GLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~-G~FPSnYVE~L  524 (525)
                      ...++|||+|.+..+++|+|.+||+|.|+...+.+||.|++.+.. ||||++||+.+
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~~G~~P~~yv~~~   63 (69)
T 2eqi_A            7 GRTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDI   63 (69)
T ss_dssp             CCEEEESSCBCCCSSSCCCBCTTCEEESCCCCSSSCEEEEETTEEEEEECGGGEEEC
T ss_pred             CcEEEECeeECCCCcCccCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEchHHcEEC
Confidence            568999999999999999999999999999888999999987777 99999999876

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.25  E-value=5.6e-12  Score=98.94  Aligned_cols=57  Identities=25%  Similarity=0.449  Sum_probs=50.9

Q ss_pred             ccEEEEeccCCCCCCCC-cccCCCCeEEEEEe-ecCCeEEEE--ECCeeeeecCCCeeecC
Q psy194          469 GYTAVALYDYQASADDE-ISFDPDDIITNIEM-IDEGWWRGY--CHGQYGLFPANYVSLQQ  525 (525)
Q Consensus       469 g~~AvALYDYqAqsedE-LSFskGDIItVLek-~DeGWW~Gr--~~Gr~G~FPSnYVE~LQ  525 (525)
                      ...++|||+|.+...++ |+|.+||+|.|+.. .++|||.|+  ++|+.||||+|||+.|+
T Consensus         7 ~~~~~al~dy~~~~~~e~Lsf~~Gd~i~v~~~~~~~gW~~g~~~~~g~~G~fP~~yv~~l~   67 (67)
T 3rnj_A            7 RMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRVLD   67 (67)
T ss_dssp             CCEEEESSCBCCCSCTTBCCBCTTCEEEECSSSCBTTEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             CeEEEEccccCCCCCCCCccCCCCCEEEEeeccCCCCCEEEEECCCCCEEEEEHHHeEECc
Confidence            45899999999988777 99999999999954 678999999  68999999999999874

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=8.1e-12  Score=103.41  Aligned_cols=56  Identities=38%  Similarity=0.803  Sum_probs=53.1

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|.+||+|.|+...+.+||.|++.|+.||||++||+.+
T Consensus        17 ~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   72 (88)
T 1x2q_A           17 ARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVTTN   72 (88)
T ss_dssp             CEEEEESSCCCCCSSSCCCCCSSCEEEEEECSCSSSEEEEETTEEEEECGGGEESC
T ss_pred             CeEEEEcccCCCCCcCccCCCCCCEEEEEEeCCCCEEEEEECCcEEEEehHHEEEc
Confidence            56899999999999999999999999999988899999999999999999999875

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A

Probab=99.25  E-value=9.6e-12  Score=97.61  Aligned_cols=56  Identities=30%  Similarity=0.647  Sum_probs=52.0

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECC--eeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHG--QYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~G--r~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|.+||+|.|+...+++||.|++.+  +.||||++||+.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   63 (67)
T 2o9s_A            6 TGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVI   63 (67)
T ss_dssp             SEEEEECSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEECTTSSCEEEEEGGGEEEE
T ss_pred             CEEEEECccCCcCCcCccCCCCCCEEEEEEecCCCEEEEEECCCCCEEEEChHHeEEC
Confidence            4679999999999999999999999999998889999999765  9999999999876

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A

Probab=99.25  E-value=1.1e-11  Score=94.22  Aligned_cols=53  Identities=23%  Similarity=0.395  Sum_probs=49.9

Q ss_pred             EEEEeccC-CCCCCCCcccCCCCeEEEEEeecCCeEEEEEC--CeeeeecCCCeee
Q psy194          471 TAVALYDY-QASADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYVSL  523 (525)
Q Consensus       471 ~AvALYDY-qAqsedELSFskGDIItVLek~DeGWW~Gr~~--Gr~G~FPSnYVE~  523 (525)
                      .++|||+| .+...++|+|.+||+|.|+...++|||.|++.  |+.||||++||+.
T Consensus         2 ~~~al~d~~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~   57 (58)
T 1zuy_A            2 MFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMKP   57 (58)
T ss_dssp             EEEESSCBCCCSCTTBCCBCTTCEEEEEEECTTSEEEEEESSCSCEEEEEGGGEEC
T ss_pred             EEEEecccCCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEecHHHEEE
Confidence            58999999 89999999999999999999989999999976  9999999999975

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=6.7e-12  Score=99.29  Aligned_cols=56  Identities=25%  Similarity=0.512  Sum_probs=53.0

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+..+++|+|.+||+|.|+...+++||.|+++|+.||||++||+.+
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   63 (70)
T 2ega_A            8 LEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQ   63 (70)
T ss_dssp             CBCEECCSCCCCCSSSSCCCCTTCBCEEEEECTTSEEEEECSSCEEEEEGGGCEES
T ss_pred             CcEEEECceECCCCCCcccCCCCCEEEEEEccCCCeEEEEECCCEEEEehHHcEEC
Confidence            45799999999999999999999999999998999999999999999999999876

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=6.3e-12  Score=101.43  Aligned_cols=56  Identities=41%  Similarity=0.722  Sum_probs=51.9

Q ss_pred             ccEEEEeccCCCCC-------CCCcccCCCCeEEEEEeec-CCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASA-------DDEISFDPDDIITNIEMID-EGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqs-------edELSFskGDIItVLek~D-eGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ..+++|||+|.+..       .++|+|.+||+|.|+...+ +|||.|+++|+.||||++||+.+
T Consensus         7 ~~~~~Al~dy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~~P~~yv~~~   70 (76)
T 2csi_A            7 GRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFLEEV   70 (76)
T ss_dssp             SEEEECSSCCCTTTTSCSSSTTTSCCCCTTCEEEEESSCCSSSEEEEEETTEEEEEEGGGCCBC
T ss_pred             ccEEEEcccCCCCCcccCCCCCCcccCCCCCEEEEeEecCCCCeEEEEECCcEEEEehHHEEEC
Confidence            56899999999998       8999999999999999876 48999999999999999999876

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}

Probab=99.25  E-value=7.1e-12  Score=98.38  Aligned_cols=57  Identities=26%  Similarity=0.452  Sum_probs=51.9

Q ss_pred             ccEEEEeccCCC-CCCCCcccCCCCeEEEEEe-ecCCeEEEEEC--CeeeeecCCCeeecC
Q psy194          469 GYTAVALYDYQA-SADDEISFDPDDIITNIEM-IDEGWWRGYCH--GQYGLFPANYVSLQQ  525 (525)
Q Consensus       469 g~~AvALYDYqA-qsedELSFskGDIItVLek-~DeGWW~Gr~~--Gr~G~FPSnYVE~LQ  525 (525)
                      ...++|||+|.+ ..+++|+|.+||+|.|+.. .+++||.|++.  |+.||||++||+.+.
T Consensus         6 ~~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   66 (67)
T 2kxc_A            6 KQKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKLLE   66 (67)
T ss_dssp             CCEEEESSCBCCSSCSSBCCBCTTCEEEESSSSCBTTEEEEEESSSCCEEEEEGGGEEESC
T ss_pred             CEEEEEeecCCCCCCCCCCcCCCCCEEEEeECCCCCCcEEEEECCCCCEEEEehHHeEECC
Confidence            468999999996 8999999999999999986 78899999976  999999999998863

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}

Probab=99.25  E-value=1.1e-11  Score=99.81  Aligned_cols=56  Identities=30%  Similarity=0.522  Sum_probs=52.1

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEEC--CeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~--Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+..+++|+|.+||+|.|+...++|||.|++.  |+.||||+|||+.+
T Consensus         5 ~~~~~Alydy~a~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~G~~P~~yv~~~   62 (73)
T 2lcs_A            5 NQRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYI   62 (73)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEEETTTEEEEECTTSSCEEEEESTTEEEC
T ss_pred             CCEEEECccCCCCCCCccCCcCCCEEEEEEEcCCCEEEEEECCCCCEEEeeHHHEEEC
Confidence            357999999999999999999999999999999999999964  89999999999876

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.25  E-value=3.3e-12  Score=102.14  Aligned_cols=57  Identities=35%  Similarity=0.627  Sum_probs=52.2

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEe-ecCCeEEEEECCeeeeecCCCeeecC
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEM-IDEGWWRGYCHGQYGLFPANYVSLQQ  525 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek-~DeGWW~Gr~~Gr~G~FPSnYVE~LQ  525 (525)
                      ...++|||+|.+...++|+|.+||+|.|+.. .+.+||.|+++|+.||||+|||+.+.
T Consensus        10 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   67 (72)
T 1ugv_A           10 FRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFLS   67 (72)
T ss_dssp             CCCEEESSCBCCCSSSBCCBCTTCEEBSCCBCSSTTEEEEESSSCEEEEEGGGEEECC
T ss_pred             ccEEEEccccCCcCCCEeCCcCCCEEEEEEecCCCCeEEEEECCcEEEecHHHEEECC
Confidence            4579999999999999999999999999874 67899999999999999999999873

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=5e-12  Score=100.65  Aligned_cols=56  Identities=25%  Similarity=0.382  Sum_probs=52.5

Q ss_pred             ccEEEEeccCCC-CCCCCcccCCCCeEEEEEeecCCeEEEE--ECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQA-SADDEISFDPDDIITNIEMIDEGWWRGY--CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqA-qsedELSFskGDIItVLek~DeGWW~Gr--~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+ ...++|+|.+||+|.|+...+++||.|+  ++|+.||||+|||+.+
T Consensus         7 ~~~~~Alydy~~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~   65 (71)
T 2gqi_A            7 GRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEV   65 (71)
T ss_dssp             CCCEEESSCCCCCTTSSCCCCCTTCBCCCCEECSSSCEEEECTTTCCEEEECTTSEEEC
T ss_pred             CCEEEECcccCCCCCCCCCCCCCCCEEEEEEecCCCEEEEEECCCCCEEEeeHHHEEEC
Confidence            457999999999 9999999999999999999899999999  7899999999999876

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A

Probab=99.25  E-value=1.2e-11  Score=97.62  Aligned_cols=55  Identities=20%  Similarity=0.324  Sum_probs=51.3

Q ss_pred             cEEEEeccCC-CCCCCCcccCCCCeEEEEEeecCCeEEEEEC--CeeeeecCCCeeec
Q psy194          470 YTAVALYDYQ-ASADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYVSLQ  524 (525)
Q Consensus       470 ~~AvALYDYq-AqsedELSFskGDIItVLek~DeGWW~Gr~~--Gr~G~FPSnYVE~L  524 (525)
                      ..++|||+|. +...++|+|.+||+|.|+...++|||.|++.  |+.||||++||+.+
T Consensus         3 ~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~   60 (69)
T 1ruw_A            3 PKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPY   60 (69)
T ss_dssp             SEEEESSCBCCCSCTTBCCBCTTCEEEEEEECTTSEEEEEETTSSCEEEEEGGGEEEC
T ss_pred             cEEEEccccCCCCCCCcccCCCCCEEEEEEecCCCeEEEEECCCCCEEEEehHHeEEc
Confidence            4689999996 9999999999999999999988999999976  99999999999876

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.25  E-value=4.3e-12  Score=100.68  Aligned_cols=55  Identities=31%  Similarity=0.680  Sum_probs=51.9

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      +..++|||+|.+...++|+|.+||+|.|+.. +.+||.|+++|+.||||++||+.+
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~g~~G~~P~~yv~~~   62 (69)
T 1uhf_A            8 GEEYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYVKPK   62 (69)
T ss_dssp             SEEEECSSCBCCSSSSBCCBCTTCEEEECEE-ETTEEEECSTTCCEEECGGGCEEC
T ss_pred             CCEEEEeeeECCCCcCccCCCCCCEEEEEEe-CCCEEEEEeCCcEEEEchHHeEEC
Confidence            5689999999999999999999999999988 789999999999999999999876

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}

Probab=99.24  E-value=7.2e-12  Score=98.42  Aligned_cols=57  Identities=28%  Similarity=0.593  Sum_probs=53.3

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEE-ECCeeeeecCCCeeecC
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYVSLQQ  525 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr-~~Gr~G~FPSnYVE~LQ  525 (525)
                      ...++|||+|.+..+++|+|.+||+|.|+...+++||.|+ ++|+.||||++||+.+.
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   67 (68)
T 1s1n_A           10 GEEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLEPYS   67 (68)
T ss_dssp             CEEEEECSCBCCSSSSCCCBCSSEEEEECSCCSSSEEEEECSSSCEEEEESTTEEECC
T ss_pred             CCEEEEcccCCCCCCCcCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEehHHeEECc
Confidence            4678999999999999999999999999999888999999 89999999999998863

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=8.2e-12  Score=98.86  Aligned_cols=56  Identities=29%  Similarity=0.473  Sum_probs=53.1

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|.+||+|.|+...+++||.|++.|+.||||++||+.+
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   63 (71)
T 2dnu_A            8 EEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKKA   63 (71)
T ss_dssp             SEEEECSSCBCCSSTTBCCBCTTCEEEECCCCSSSEEEEEETTEEEEEEGGGCEEC
T ss_pred             CCEEEECCccCCCCCCCCcCCCCCEEEEeECCCCCeEEEEECCcEEEEEHHHeEEc
Confidence            46899999999999999999999999999988899999999999999999999876

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.24  E-value=1.3e-11  Score=98.97  Aligned_cols=57  Identities=37%  Similarity=0.718  Sum_probs=52.9

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEEC---Cee------eeecCCCeeecC
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH---GQY------GLFPANYVSLQQ  525 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~---Gr~------G~FPSnYVE~LQ  525 (525)
                      +..++|||+|.+..+++|+|.+||+|.|+...+.+||.|++.   |+.      ||||++||+.++
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~~~~~~~G~~P~~yv~~~~   72 (77)
T 2d8j_A            7 GQYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVAEDS   72 (77)
T ss_dssp             CEEEEESSCBCCSSSSBCCBCTTCCEEEEECCSSSEEEEEECSSCCSSCCCCSEEEEETTTEEECC
T ss_pred             CCEEEEccCCCCCCCCccCCCCCCEEEEEECCCCCeEEEEECCCCCcCcccCCceEECHHHeeEcC
Confidence            468999999999999999999999999999989999999976   888      999999998763

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A

Probab=99.24  E-value=7e-12  Score=100.70  Aligned_cols=56  Identities=36%  Similarity=0.780  Sum_probs=51.9

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEee-cCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMI-DEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~-DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ++.++|||+|.+...++|+|.+||+|.|+... +.+||.|+++|+.||||++||+.+
T Consensus         9 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   65 (74)
T 1gbq_A            9 SMEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMK   65 (74)
T ss_dssp             -CEEEESSCBCCSSTTBCCBCTTCEEECCBCSSCSSEEEEEETTEEEEEEGGGEEEE
T ss_pred             CeEEEECccCCCCCCCeeeEcCCCEEEEeEecCCCCEEEEEECCCEEEEehHhEEEc
Confidence            56899999999999999999999999999987 679999999999999999999875

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.24  E-value=8.2e-12  Score=99.29  Aligned_cols=56  Identities=25%  Similarity=0.481  Sum_probs=51.7

Q ss_pred             ccEEEEeccCCC-CCCCCcccCCCCeEEEEEe-ecCCeEEEEEC--CeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQA-SADDEISFDPDDIITNIEM-IDEGWWRGYCH--GQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqA-qsedELSFskGDIItVLek-~DeGWW~Gr~~--Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+ ...++|+|.+||+|.|+.. .+++||.|++.  |+.||||++||+.+
T Consensus         7 ~~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~   66 (72)
T 1spk_A            7 GQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLL   66 (72)
T ss_dssp             SCEEECSSCBCCSSCSSBCCBCTTCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEEC
T ss_pred             ceEEEEeeeeCCCCCCCCCcCCCCCEEEEeEccCCCCcEEEEECCCCCEEEEehHHeEEC
Confidence            468999999996 8999999999999999987 78899999987  99999999999886

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.24  E-value=1.1e-11  Score=99.35  Aligned_cols=55  Identities=40%  Similarity=0.774  Sum_probs=51.7

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+..+++|+|.+||+|.|+.. +++||.|+++|+.||||++||+.+
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~g~~G~~P~~yv~~~   64 (74)
T 1j3t_A           10 NLKAQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKII   64 (74)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEE-CSSEEEEESTTCCCEEEGGGEEEC
T ss_pred             CeEEEECCCCCCCCCCccCCCCCCEEEEEec-CCCEEEEEECCcEEEEchHHeEEC
Confidence            5689999999999999999999999999998 479999999999999999999876

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}

Probab=99.24  E-value=8.9e-12  Score=98.21  Aligned_cols=56  Identities=30%  Similarity=0.600  Sum_probs=52.7

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEE--ECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY--CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr--~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+..+++|+|.+||+|.|+...+++||.|+  ++|+.||||++||+.+
T Consensus         7 ~~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   64 (70)
T 2cuc_A            7 GNMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPV   64 (70)
T ss_dssp             SCCEECCSCBCCCSTTBCCBCTTCEEEEEEEEETTEEEEEETTTCCEEEEEGGGCEEC
T ss_pred             CcEEEECeeECcCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEEchHHeEEC
Confidence            4579999999999999999999999999999889999999  7999999999999876

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.23  E-value=8e-12  Score=100.74  Aligned_cols=56  Identities=27%  Similarity=0.617  Sum_probs=50.3

Q ss_pred             ccEEEEeccCCCCCCC-CcccCCCCeEEEEEeec-----CCeEEEEE-CCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADD-EISFDPDDIITNIEMID-----EGWWRGYC-HGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsed-ELSFskGDIItVLek~D-----eGWW~Gr~-~Gr~G~FPSnYVE~L  524 (525)
                      ...++|+|+|.++.++ +|+|.+||+|.|+...+     ++||.|++ +|+.||||+|||+.|
T Consensus         7 ~~~~~aly~y~a~~~~dELsf~~Gd~i~Vl~~~~~~~~~~gWW~g~~~~G~~G~~PsnyV~~l   69 (69)
T 1nm7_A            7 HHFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII   69 (69)
T ss_dssp             --CEEECSCCCCSSTTSCCCCCTTCEEEECCSSSSSCCSSSCEEEEETTTEEEEECGGGEEEC
T ss_pred             eeEEEEEecccCCCCCCccCCCCCCEEEEEecCCCCCCCCCeeEEEeCCCCEEEecHHHEEEC
Confidence            3579999999999999 99999999999999875     49999998 899999999999875

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=99.23  E-value=1.3e-11  Score=97.96  Aligned_cols=57  Identities=32%  Similarity=0.679  Sum_probs=52.4

Q ss_pred             CccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEE---CCee---eeecCCCeeecC
Q psy194          468 LGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC---HGQY---GLFPANYVSLQQ  525 (525)
Q Consensus       468 ~g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~---~Gr~---G~FPSnYVE~LQ  525 (525)
                      ....++|||+|.+..+++|+|.+||+|.| ...++|||.|++   +|+.   ||||+|||+.++
T Consensus         9 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v-~~~~~~Ww~g~~~~~~g~~~~~G~~P~~yv~~~~   71 (72)
T 2kgt_A            9 LGPKYVGLWDFKSRTDEELSFRAGDVFHV-ARKEEQWWWATLLDEAGGAVAQGYVPHNYLAERE   71 (72)
T ss_dssp             CCCEEECCTTCBCSSTTSCBCCTTCCEEE-EEECSSCEEEEEECTTSCEEEEEEECTTTSEEEC
T ss_pred             CCcEEEEcccCCCCCcCCcCCCCCCEEEE-eeCCCCEEEEEEcCCCCCEeCCcEEcHhHEEEcc
Confidence            35689999999999999999999999999 888899999997   7999   999999998763

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A

Probab=99.23  E-value=1.2e-11  Score=95.62  Aligned_cols=55  Identities=27%  Similarity=0.611  Sum_probs=50.5

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEE--ECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY--CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr--~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+..+++|+|.+||+|.|+... ++||.|+  ++|+.||||++||+.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~~~g~~G~~P~~yv~~~   62 (62)
T 2iim_A            6 DNLVIALHSYEPSHDGDLGFEKGEQLRILEQS-GEWWKAQSLTTGQEGFIPFNFVAKA   62 (62)
T ss_dssp             TCEEEESSCBCCCSTTBCCBCTTCEEEEEECC-SSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CcEEEEcccCCCCCCCCcCCCCCCEEEEEEcC-CCEEEEEECCCCCEEEEEHHHEEEC
Confidence            45799999999999999999999999999985 5999999  6899999999999864

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.23  E-value=1.9e-11  Score=98.99  Aligned_cols=56  Identities=34%  Similarity=0.609  Sum_probs=51.8

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEEC-----CeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH-----GQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~-----Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|.+||+|.|+...+++||.|++.     ++.||||++||+.+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~~~~G~fP~~yv~~~   67 (80)
T 1ue9_A            7 GEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLL   67 (80)
T ss_dssp             CEEEEECSCCCCCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEEC
T ss_pred             CeEEEECcccCCCCCCCCCCCCCCEEEEEEecCCCcEEEEECCCCCCCcEEEEchHHeEEC
Confidence            457999999999999999999999999999988999999975     49999999999876

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=1.2e-11  Score=100.57  Aligned_cols=56  Identities=20%  Similarity=0.435  Sum_probs=52.4

Q ss_pred             CccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEE--CCeeeeecCCCeeec
Q psy194          468 LGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC--HGQYGLFPANYVSLQ  524 (525)
Q Consensus       468 ~g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~--~Gr~G~FPSnYVE~L  524 (525)
                      ....++|||+|.+..+++|+|.+||+|.|+.. +++||.|++  +|+.||||++||+.+
T Consensus        16 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~gW~~g~~~~~g~~G~fP~~yv~~~   73 (79)
T 1x6b_A           16 DLPQVEITKAFFAKQADEVTLQQADVVLVLQQ-EDGWLYGERLRDGETGWFPEDFARFI   73 (79)
T ss_dssp             SCCEEEESSCCCCCSSSBCCCCTTEEEEEEEE-ETTEEEEEETTTCCEEEECGGGCEEE
T ss_pred             CCCEEEECeeECCCCcCCcCCCCCCEEEEEEe-CCCEEEEEECCCCCEEEEchHHEEEC
Confidence            35689999999999999999999999999998 899999998  999999999999876

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}

Probab=99.23  E-value=1.3e-11  Score=97.46  Aligned_cols=56  Identities=20%  Similarity=0.469  Sum_probs=52.1

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEE-ECCeeeeecCCCeeecC
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYVSLQQ  525 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr-~~Gr~G~FPSnYVE~LQ  525 (525)
                      ...++|||+|.+..+++|+|.+||+|.|+.. +++||.|+ ++|+.||||++||+.++
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~g~~G~~P~~yv~~~~   63 (68)
T 1wxt_A            7 GLKMQVLYEFEARNPRELTVVQGEKLEVLDH-SKRWWLVKNEAGRSGYIPSNILEPLS   63 (68)
T ss_dssp             CEEEEESSCBCCCSSSBCCBCTTCEEEEEEC-SSSEEEEECTTSCEEEEEGGGEECCC
T ss_pred             CeEEEECceECCCCcCcCCCCCCCEEEEEEc-CCCEEEEEECCCCEEEEEhHHcEECC
Confidence            5689999999999999999999999999998 48999999 89999999999998763

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A

Probab=99.23  E-value=1.2e-11  Score=101.14  Aligned_cols=56  Identities=27%  Similarity=0.605  Sum_probs=52.5

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEE--CCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC--HGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~--~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|.+||+|.|+...+.|||.|++  +|+.||||++||+.+
T Consensus         5 ~~~~~Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   62 (79)
T 3cqt_A            5 STLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPV   62 (79)
T ss_dssp             CCCEEESSCBCCCSTTBCCBCTTCEEEEEECTTSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CcEEEECccCCCCCcCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEeehHHeEEC
Confidence            34689999999999999999999999999988899999998  999999999999876

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=1.9e-11  Score=98.53  Aligned_cols=56  Identities=21%  Similarity=0.449  Sum_probs=51.3

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEE----CCeeeeecCCCeeecC
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC----HGQYGLFPANYVSLQQ  525 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~----~Gr~G~FPSnYVE~LQ  525 (525)
                      ...++|||+|.+. .++|+|.+||+|.|+...+++||.|++    +|+.||||++||+.+.
T Consensus        10 ~~~~~alydy~~~-~~eLs~~~Gd~i~vl~~~~~gWw~g~~~~~~~g~~G~~P~~yv~~~~   69 (75)
T 2egc_A           10 KDVYVSIADYEGD-EETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKKN   69 (75)
T ss_dssp             CEEEEECSCBCCC-SSSCCBCTTCEEEECEECTTSEEEEEECCSSSCEEEEEEGGGEEECC
T ss_pred             CeEEEECCCcCCC-CCcCCCCCCCEEEEEEcCCCCeEEEEeCCCCCCcEEEEehHHCEECC
Confidence            4679999999999 999999999999999999999999997    5799999999998763

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=9.4e-12  Score=100.98  Aligned_cols=57  Identities=37%  Similarity=0.749  Sum_probs=52.9

Q ss_pred             CccEEEEeccCCCCCCCCcccCCCCeEEEEEeec--CCeEEEEECCeeeeecCCCeeec
Q psy194          468 LGYTAVALYDYQASADDEISFDPDDIITNIEMID--EGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       468 ~g~~AvALYDYqAqsedELSFskGDIItVLek~D--eGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ....++|||+|.+...++|+|.+||+|.|+...+  .+||.|+++|+.||||++||+.+
T Consensus        16 ~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   74 (80)
T 2d8h_A           16 QPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTMN   74 (80)
T ss_dssp             SCEEEECSSCEECSSTTBCEECTTCEEEEEECCSCSSSEEEEEETTEEEEEEGGGCCBC
T ss_pred             CCEEEEECccCCcCCCCeeeEcCCCEEEEeECcCCCCCeEEEEECCEEEEEchhHeEEc
Confidence            3568999999999999999999999999999875  89999999999999999999876

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A

Probab=99.22  E-value=8.8e-12  Score=95.85  Aligned_cols=55  Identities=25%  Similarity=0.549  Sum_probs=51.0

Q ss_pred             cEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEE-ECCeeeeecCCCeeecC
Q psy194          470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYVSLQQ  525 (525)
Q Consensus       470 ~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr-~~Gr~G~FPSnYVE~LQ  525 (525)
                      ..++|||+|.+..+++|+|.+||+|.|+.. +++||.|+ .+|+.||||++||+.++
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~g~~G~~P~~yv~~~~   57 (60)
T 1i07_A            2 KYAKSKYDFVARNSSELSVMKDDVLEILDD-RRQWWKVRNASGDSGFVPNNILDIMR   57 (60)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEECGG-GCCEEEEECTTSCEEEEEGGGEEEEC
T ss_pred             eEEEECccCCCCCCCcccCCCCCEEEEEEc-CCCeEEEEECCCCEEEEEHHHeEEcc
Confidence            368999999999999999999999999998 88999998 68999999999998763

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.21  E-value=1.6e-11  Score=99.33  Aligned_cols=56  Identities=27%  Similarity=0.592  Sum_probs=52.4

Q ss_pred             ccEEEEeccCCCCCCC-CcccCCCCeEEEEEeecC-----CeEEEEE-CCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADD-EISFDPDDIITNIEMIDE-----GWWRGYC-HGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsed-ELSFskGDIItVLek~De-----GWW~Gr~-~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...+ +|+|.+||+|.|+...+.     +||.|++ +|+.||||++||+.+
T Consensus        14 ~~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   76 (80)
T 2v1r_A           14 LEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII   76 (80)
T ss_dssp             CEEEEESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECTTSCEEEEEGGGEEEC
T ss_pred             CEEEEECccCCCCCCCCEecCCCCCEEEEEECCCCCCCCCCcEEEEeCCCCeEEEEHHHeEEc
Confidence            4689999999999999 999999999999998876     9999997 899999999999887

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A

Probab=99.21  E-value=1.7e-11  Score=97.87  Aligned_cols=55  Identities=25%  Similarity=0.564  Sum_probs=50.6

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEE-ECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr-~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+..+++|+|.+||+|.|+.. +++||.|+ ++|+.||||+|||+.+
T Consensus         4 ~~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~-~~~Ww~~~~~~g~~G~~Psnyv~~~   59 (67)
T 2b86_A            4 EVIVIAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNAANRTGYVPSNYVERK   59 (67)
T ss_dssp             CEEEEESSCBCCSSTTSCCBCTTCEEEEEEC-SSSSCEEECTTSCEEECCCCSEEEC
T ss_pred             CeEEEEeeeECCCCCCccccCCCCEEEEEec-CCCeEEEEeCCCCEEEeChHHEeEc
Confidence            3579999999999999999999999999998 47999999 6899999999999875

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.21  E-value=1.1e-11  Score=103.04  Aligned_cols=56  Identities=34%  Similarity=0.654  Sum_probs=52.3

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEEC--CeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~--Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|.+||+|.|+...+.+||.|++.  |+.||||+|||+.+
T Consensus        17 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~fP~~yv~~~   74 (90)
T 2yup_A           17 YGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVS   74 (90)
T ss_dssp             SEEEEECSCCCCCSSSBCCCCTTCEEEESSCCCSSEEEEECTTTCCEEEEEGGGEEEE
T ss_pred             ceEEEEeecCCcCCcCcCCCCCCCEEEEEEEcCCCeEEEEECCCCCEEEEehHHeEEc
Confidence            457999999999999999999999999999888999999976  99999999999876

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=1.8e-11  Score=103.38  Aligned_cols=57  Identities=35%  Similarity=0.556  Sum_probs=51.5

Q ss_pred             ccEEEEeccCCCC--------CCCCcccCCCCeEEEEEe-ecCCeEEEEECCeeeeecCCCeeecC
Q psy194          469 GYTAVALYDYQAS--------ADDEISFDPDDIITNIEM-IDEGWWRGYCHGQYGLFPANYVSLQQ  525 (525)
Q Consensus       469 g~~AvALYDYqAq--------sedELSFskGDIItVLek-~DeGWW~Gr~~Gr~G~FPSnYVE~LQ  525 (525)
                      ...++|||+|.+.        ..++|+|.+||+|.|+.. .++|||.|+++|+.||||+|||+.++
T Consensus        17 ~~~~~Alydy~~~~~~~~~~~~~~eLsf~~Gd~i~vl~~~~~~gWw~g~~~g~~G~~P~~yv~~~~   82 (97)
T 2csq_A           17 ARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETCARLGLIPCNMVSEIQ   82 (97)
T ss_dssp             CEEEECSSCBCTTTTSSCHHHHTTBCCBCTTCEEEEEEEECTTCEEEEEETTEEEEEETTTSEECC
T ss_pred             ceEEEEccccCCCcccccCCCCCCccCCCCCCEEEEEEecCCCCeEEEEECCcEEEEehHHeEECC
Confidence            5678999999999        789999999999999965 45789999999999999999999873

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.21  E-value=2e-11  Score=98.16  Aligned_cols=56  Identities=30%  Similarity=0.620  Sum_probs=52.2

Q ss_pred             ccEEEEeccCCCC-CCCCcccCCCCeEEEEEee-cCCeEEEE-ECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQAS-ADDEISFDPDDIITNIEMI-DEGWWRGY-CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAq-sedELSFskGDIItVLek~-DeGWW~Gr-~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+. ..++|+|.+||+|.|+... +.+||.|+ ++|+.||||++||+.+
T Consensus         9 ~~~~~al~dy~~~~~~~eLs~~~Gd~i~v~~~~~~~gW~~g~~~~g~~G~~P~~yv~~~   67 (77)
T 2enm_A            9 ATKARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYVEIL   67 (77)
T ss_dssp             CEEEEESSCCCCCTTSSBCCCCTTCEEEEEESCCSSSEEEEECTTCCEEEEETTTEEEE
T ss_pred             CcEEEECccCCCCCCCCeecCCCCCEEEEeEccCCCCeEEEEECCCCEEEeehHHeEEC
Confidence            3689999999999 9999999999999999985 78999999 8999999999999876

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}

Probab=99.20  E-value=1.3e-11  Score=102.16  Aligned_cols=56  Identities=27%  Similarity=0.533  Sum_probs=51.9

Q ss_pred             ccEEEEeccC-CCCCCCCcccCCCCeEEEEEeecCCeEEEEEC------CeeeeecCCCeeec
Q psy194          469 GYTAVALYDY-QASADDEISFDPDDIITNIEMIDEGWWRGYCH------GQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDY-qAqsedELSFskGDIItVLek~DeGWW~Gr~~------Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+| .+...++|+|.+||+|.|+...+++||.|++.      |+.||||+|||+.+
T Consensus        18 ~~~~~Alydy~~a~~~~eLsf~~GDiI~V~~~~~~gWw~G~~~~~~~~tg~~G~fPsnyV~~~   80 (83)
T 2ke9_A           18 SLKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEVV   80 (83)
T ss_dssp             CEEEEESSCBCCCSCTTBCCBCTTCEEEESCSSCSSCEEEEECCSSTTSCCCEEECGGGEESS
T ss_pred             CeEEEEccccCCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCCCCCCCEEEechHHEEEC
Confidence            4689999999 89999999999999999999988999999975      79999999999876

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.20  E-value=9.7e-12  Score=104.95  Aligned_cols=56  Identities=27%  Similarity=0.519  Sum_probs=52.2

Q ss_pred             ccEEEEeccCCCCC------CCCcccCCCCeEEEE-EeecCCeEEEEE-CCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASA------DDEISFDPDDIITNI-EMIDEGWWRGYC-HGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqs------edELSFskGDIItVL-ek~DeGWW~Gr~-~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+..      .++|+|.+||+|.|+ ...++|||.|++ +|+.||||+|||+.+
T Consensus        17 ~~~~~Alydy~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~~g~~G~~Psnyv~~~   80 (96)
T 1wie_A           17 VHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFV   80 (96)
T ss_dssp             EEEEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEETTCCBCBCCTTSEECC
T ss_pred             CcEEEECCccCCCcccCCCCCCeeeECCCCEEEEeEecCCCCEEEEEECCCCEEEEchHHEEEc
Confidence            46899999999988      999999999999999 778899999998 999999999999876

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=1.7e-11  Score=99.30  Aligned_cols=56  Identities=30%  Similarity=0.599  Sum_probs=52.0

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeec-CCeEEEEEC-CeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMID-EGWWRGYCH-GQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~D-eGWW~Gr~~-Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|.+||+|.|+...+ .+||.|++. |+.||||++||+.+
T Consensus        13 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   70 (78)
T 2dl5_A           13 PLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYLQFP   70 (78)
T ss_dssp             SEEEEECSCBCCCSTTBCCBCSSEEEEEEECCSSSSEEEEECTTCCEEEEETTTSCCS
T ss_pred             CcEEEEceeECCCCCCCCCCCCCCEEEEEeccCCCCcEEEEeCCCCEEEEEhHHEEEC
Confidence            468999999999999999999999999999875 899999976 99999999999876

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 3ua7_A 3ua6_A 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A ...

Probab=99.20  E-value=2.1e-11  Score=100.67  Aligned_cols=56  Identities=32%  Similarity=0.583  Sum_probs=52.7

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEE--CCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC--HGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~--~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|.+||+|.|+...+.+||.|++  +|+.||||+|||+.+
T Consensus         6 ~~~~~Alydy~a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   63 (84)
T 4ag1_C            6 VTLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPV   63 (84)
T ss_dssp             CCEEEESSCBCCSBTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEET
T ss_pred             CEEEEEcccCCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCCCEEEEehHHeEEC
Confidence            35799999999999999999999999999998899999997  899999999999876

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens}

Probab=99.20  E-value=8.7e-12  Score=105.31  Aligned_cols=56  Identities=30%  Similarity=0.735  Sum_probs=53.3

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|.+||+|.|+...+++||.|+++|+.||||+|||+.+
T Consensus        18 ~~~~~Alydy~a~~~~eLsf~~Gd~i~V~~~~~~gWw~g~~~g~~G~fPsnyV~~~   73 (92)
T 2o2o_A           18 RRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKEL   73 (92)
T ss_dssp             SCEEEECSCBCCCSSSCCCBCSSCEEECCCGGGSSCBCCEETTEECCBCSSSEECC
T ss_pred             CeEEEEccccCCCCCccccccCCCEEEEeEecCCCEEEEEECCeEEEeehHHEEEC
Confidence            46899999999999999999999999999988899999999999999999999876

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}

Probab=99.19  E-value=2.6e-11  Score=96.89  Aligned_cols=55  Identities=25%  Similarity=0.570  Sum_probs=50.9

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEE-ECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr-~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+..+++|+|.+||+|.|+.. +++||.|+ ++|+.||||++||+.+
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~~   62 (72)
T 2jw4_A            7 EVVVVAKFDYVAQQEQELDIKKNERLWLLDD-SKSWWRVRNSMNKTGFVPSNYVERK   62 (72)
T ss_dssp             CEEEECSSCCCCSSTTSCCCCTTCEEEEEEC-SSSSEEEECTTSCEEEECTTSCEEC
T ss_pred             CeEEEECcCCCcCCCCcccCCCCCEEEEEEC-CCCEEEEEECCCCEEEEEhhHEEEc
Confidence            4689999999999999999999999999997 57999999 5999999999999876

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=99.19  E-value=1.9e-11  Score=101.39  Aligned_cols=56  Identities=30%  Similarity=0.650  Sum_probs=52.3

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEe--ecCCeEEEE-ECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEM--IDEGWWRGY-CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek--~DeGWW~Gr-~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|.+||+|.|+..  .+.+||.|+ ++|+.||||++||+.+
T Consensus        17 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   75 (91)
T 1wx6_A           17 LHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVL   75 (91)
T ss_dssp             CEEEEESSCCCCSSSSBCCCCTTCEEEEEECCSSCTTEEEEECTTCCEEEEEGGGEEEE
T ss_pred             cEEEEEeecCCcCCCCcccCCCCCEEEEEECCCCCCCcEEEEeCCCCEEEEchHHEEEC
Confidence            4689999999999999999999999999998  678999999 8999999999999876

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A

Probab=99.19  E-value=3.3e-11  Score=100.18  Aligned_cols=57  Identities=26%  Similarity=0.569  Sum_probs=52.9

Q ss_pred             CccEEEEeccCCCCCCC-CcccCCCCeEEEEEeecC-----CeEEEEE-CCeeeeecCCCeeec
Q psy194          468 LGYTAVALYDYQASADD-EISFDPDDIITNIEMIDE-----GWWRGYC-HGQYGLFPANYVSLQ  524 (525)
Q Consensus       468 ~g~~AvALYDYqAqsed-ELSFskGDIItVLek~De-----GWW~Gr~-~Gr~G~FPSnYVE~L  524 (525)
                      ....++|||+|.+...+ +|+|.+||+|.|+...+.     |||.|++ +|+.||||++||+.+
T Consensus        13 ~~~~~~alydy~~~~~~~eLsf~~Gd~i~v~~~~~~~~~~~gWw~g~~~~g~~G~~P~~yv~~~   76 (92)
T 1jqq_A           13 KLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII   76 (92)
T ss_dssp             TCEEEEESSBBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEEETTSCEEEEEGGGEEEC
T ss_pred             cCEEEEECccCCCCCCCCCcCCCCCCEEEEEECCCCCCCCCCCeEEEeCCCCEEEEehHHeEEC
Confidence            35689999999999999 999999999999998876     9999998 899999999999876

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A

Probab=99.18  E-value=6.4e-12  Score=98.60  Aligned_cols=56  Identities=32%  Similarity=0.557  Sum_probs=52.6

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEE-ECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr-~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|.+||+|.|+...+.+||.|+ ++|+.||||++||+.+
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   64 (67)
T 1aww_A            8 LKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEA   64 (67)
T ss_dssp             CCEEEBSSCCCCSSSSSCCCCSSCEEECCCCCSSSEECCBCTTSCBCCEETTTBCCS
T ss_pred             CeEEEECccCCCCCCCCccCCCCCEEEEEEccCCCcEEEEECCCCEEEEchHhEEEc
Confidence            4689999999999999999999999999998889999999 8999999999999875

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A

Probab=99.18  E-value=2.9e-11  Score=95.59  Aligned_cols=55  Identities=25%  Similarity=0.442  Sum_probs=50.9

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEE-ECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr-~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+..+++|+|.+||+|.|+... .+||.|+ ++|+.||||+|||+.+
T Consensus         8 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~~g~~G~~P~~yv~~~   63 (68)
T 2k2m_A            8 LKWVLCNYDFQARNSSELSVKQRDVLEVLDDS-RKWWKVRDPAGQEGYVPYNILTPY   63 (68)
T ss_dssp             CCEEEESSCBCCCSSSBCCBCTTCEEEEEECS-SSEEEEECTTSCCEEEEGGGEEEC
T ss_pred             CEEEEECccCCCCCCCcccCCCCCEEEEEEcC-CCeEEEEeCCCCEEEEEhhhEEEc
Confidence            46799999999999999999999999999985 8999998 6899999999999876

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}

Probab=99.18  E-value=2.1e-11  Score=96.55  Aligned_cols=55  Identities=42%  Similarity=0.883  Sum_probs=49.6

Q ss_pred             ccEEEEeccCCCCCCC--CcccCCCCeEEEEEeecCCeEEEE-ECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADD--EISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsed--ELSFskGDIItVLek~DeGWW~Gr-~~Gr~G~FPSnYVE~L  524 (525)
                      .+.++|||+|.+...+  +|+|.+||+|.|+.. +.+||.|+ ++|+.||||+|||+.+
T Consensus         5 ~~~~~alydy~~~~~~~~eLsf~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~~   62 (70)
T 2vkn_A            5 IYKAKALYPYDADDDDAYEISFEQNEILQVSDI-EGRWWKARRANGETGIIPSNYVQLI   62 (70)
T ss_dssp             EEEEEESSCBCCCSSSTTBCCBCTTCEEEEECT-TSSEEEEECTTSCEEEEEGGGEEEE
T ss_pred             CEEEEECccCCCCCCCCCcccCCCCCEEEEEEc-CCCeEEEEECCCCEEEEehHHEEEC
Confidence            4689999999998765  999999999999886 78999998 7999999999999875

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.18  E-value=2.9e-11  Score=101.58  Aligned_cols=55  Identities=38%  Similarity=0.825  Sum_probs=51.2

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEee-----cCCeEEEEE-CCeeeeecCCCeee
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMI-----DEGWWRGYC-HGQYGLFPANYVSL  523 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~-----DeGWW~Gr~-~Gr~G~FPSnYVE~  523 (525)
                      ...++|||+|.+...++|+|.+||+|.|+...     ++|||.|++ +|+.||||++||++
T Consensus        29 ~~~~~Alydy~a~~~~ELsf~~GD~I~Vl~~~~~~~~~~gWw~g~~~~g~~G~fP~nyV~p   89 (89)
T 2rf0_A           29 GPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYVAP   89 (89)
T ss_dssp             CCEEEECSCBCCSSTTBCCBCTTCEEEEEECCHHHHSSTTEEEEECTTCCEEEEEGGGEEC
T ss_pred             CcEEEECCccCCCCCCccccCCCCEEEEEeccCCcccCCCEEEEEECCCCEEEEcHHHCcC
Confidence            46899999999999999999999999999984     789999997 99999999999974

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus}

Probab=99.17  E-value=2.2e-11  Score=101.74  Aligned_cols=58  Identities=40%  Similarity=0.592  Sum_probs=53.0

Q ss_pred             CCccEEEEeccCCCCCCCCcccCCCCeEEEEEeec----CCeEEEEECCe-eeeecCCCeeec
Q psy194          467 DLGYTAVALYDYQASADDEISFDPDDIITNIEMID----EGWWRGYCHGQ-YGLFPANYVSLQ  524 (525)
Q Consensus       467 ~~g~~AvALYDYqAqsedELSFskGDIItVLek~D----eGWW~Gr~~Gr-~G~FPSnYVE~L  524 (525)
                      .....++|||+|.+...++|+|.+||+|.|+...+    .+||.|++++. .||||++||+.+
T Consensus        15 ~~~~~~~alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~~~gWw~g~~~~~~~G~~P~~yv~~~   77 (93)
T 1wxu_A           15 DDHVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKIL   77 (93)
T ss_dssp             SCBBCEEESSCBCCSSSSBCCBCSSCBCEECCTTTSCSCSSCEEEESSSSSCEEECSTTEEEC
T ss_pred             CCCEEEEECccCCCCCCCccCcCCCCEEEEEECCCCCCCCCcEEEEeCCcCEEEEehHHEEEc
Confidence            34678999999999999999999999999999876    69999998877 999999999986

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A

Probab=99.17  E-value=4.9e-11  Score=97.63  Aligned_cols=55  Identities=33%  Similarity=0.660  Sum_probs=51.6

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEE--CCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC--HGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~--~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|.+||+|.|+... ++||.|++  +|+.||||++||+.+
T Consensus        25 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~~~g~~G~~P~~yv~~~   81 (86)
T 2oi3_A           25 DIIVVALYDYEAIHHEDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARV   81 (86)
T ss_dssp             SEEEEESSCCCCSSSSCCCCCTTCEEEEEEES-SSEEEEEETTTCCEEEEEGGGEEEG
T ss_pred             CcEEEECccCCCCCCCcCcCCCCCEEEEEEcC-CCeEEEEECCCCCEEEEehHHcEEc
Confidence            46899999999999999999999999999988 59999998  999999999999876

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=5.3e-11  Score=97.39  Aligned_cols=56  Identities=23%  Similarity=0.448  Sum_probs=51.3

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecC-CeEEEEE--CCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDE-GWWRGYC--HGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~De-GWW~Gr~--~Gr~G~FPSnYVE~L  524 (525)
                      +..|+|||+|.+..+++|+|.+||+|.|+...++ +||.|+.  +|+.||||+|||+.+
T Consensus        17 ~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   75 (81)
T 1x6g_A           17 GTQCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALRER   75 (81)
T ss_dssp             TCEEEESSCBSSCCTTCCCBCTTCEEEEEECCCSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CCEEEECCCCCcCCCCCCCCCCCCEEEEEeccCCCCeEEEEeCCCCCEEEEehHHEEEc
Confidence            5689999999999999999999999999998766 9999985  799999999999865

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=4.6e-11  Score=94.49  Aligned_cols=56  Identities=27%  Similarity=0.530  Sum_probs=51.0

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeec-CCeEEEEEC-CeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMID-EGWWRGYCH-GQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~D-eGWW~Gr~~-Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+..+++|+|.+||+|.|+...+ +|||.|++. |+.||||++||+.+
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~vl~~~~~~gW~~~~~~~g~~G~~P~~yv~~~   64 (70)
T 2ct4_A            7 GGHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYLRVT   64 (70)
T ss_dssp             SCEEEESSCBCCCSTTCCCBCTTCEEEEEECCSSSCEEEEECSSSCEEEEEGGGEEEC
T ss_pred             CCEEEEcccCCCCCCCcCCCCCCCEEEEEeccCCCCeEEEEeCCCCEEEEEhHHeEEc
Confidence            457999999999999999999999999998764 679999976 99999999999876

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=3e-11  Score=95.38  Aligned_cols=55  Identities=29%  Similarity=0.520  Sum_probs=50.8

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEE-ECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr-~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+..+++|+|.+||+|.|+... ++||.++ ++|+.||||++||+.+
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~~g~~G~~P~~yv~~~   62 (68)
T 1wxb_A            7 GKYVKILYDFTARNANELSVLKDEVLEVLEDG-RQWWKLRSRSGQAGYVPCNILGEA   62 (68)
T ss_dssp             CCCEECSSCBCCSSSSBCCBCTTCEEEEEECS-SSEEEEECTTSCEEEEETTTCCBC
T ss_pred             CEEEEECccCCCCCCCccCCCCCCEEEEEEcC-CCEEEEEECCCCEEEEEHHHeEEC
Confidence            45799999999999999999999999999874 8999999 6999999999999876

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.15  E-value=4.2e-11  Score=98.50  Aligned_cols=56  Identities=25%  Similarity=0.562  Sum_probs=52.4

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEE-ECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr-~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|.+||+|.|+...+.+||.|+ ++|+.||||++||+.+
T Consensus        19 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~~   75 (85)
T 2yuq_A           19 ETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVEK   75 (85)
T ss_dssp             SCEEEESSCCCCSCSSBCCCCBTEEEEEEECCSSSEEEEECSSSCEEEEETTTCEEC
T ss_pred             CeEEEECcCCCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCEEEEehHHeEEc
Confidence            4679999999999999999999999999999889999998 7999999999999875

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.15  E-value=6.6e-11  Score=96.40  Aligned_cols=55  Identities=20%  Similarity=0.369  Sum_probs=50.4

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEE--CCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC--HGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~--~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|.+||+|.|+. .+.+||.+++  +|+.||||+|||+.+
T Consensus        17 ~~~~~Alydy~a~~~~eLs~~~Gd~i~v~~-~~~~Ww~~~~~~~g~~G~~P~~yv~~~   73 (79)
T 2cud_A           17 SDFLAVLSDYPSPDISPPIFRRGEKLRVIS-DEGGWWKAISLSTGRESYIPGICVARV   73 (79)
T ss_dssp             CCEEEESSCSSCTTTSCCSSCTTCEEEEEE-EETTEEEEEETTTCCEEEEEGGGEEEE
T ss_pred             CeEEEEccCCCCCCCCcCCCCCCCEEEEEe-cCCCeEEEEECCCCCEEEeeHHHeEEc
Confidence            457999999999999999999999999998 5789999996  599999999999876

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A

Probab=99.15  E-value=3.3e-11  Score=104.95  Aligned_cols=56  Identities=25%  Similarity=0.455  Sum_probs=50.4

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEee-cCC--eEEEEEC--------CeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMI-DEG--WWRGYCH--------GQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~-DeG--WW~Gr~~--------Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|++||+|.|+... +.|  ||.|++.        |+.||||+|||+.+
T Consensus        22 ~~~~~Alydy~a~~~~ELsf~~GDiI~Vl~k~~~~g~dWW~G~~~~~~~~~~~g~~G~fPsnYV~~~   88 (108)
T 1i1j_A           22 ISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVRED   88 (108)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEE
T ss_pred             eeEEEECCccCCCCCCccccCCCCEEEEEEecCCCCCCEEEEEECCccccCCCCCEEEEchhHEEEc
Confidence            45799999999999999999999999999983 445  9999976        99999999999875

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A

Probab=99.15  E-value=1.5e-11  Score=107.22  Aligned_cols=56  Identities=25%  Similarity=0.439  Sum_probs=51.8

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCee---eeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQY---GLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~---G~FPSnYVE~L  524 (525)
                      ...++|||||.++.+++|+|.+||+|.|+...+++||.|+++|+.   ||||+|||+.+
T Consensus         5 ~~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~g~~g~~G~fPsnYV~~~   63 (108)
T 2rqv_A            5 SLYAIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSII   63 (108)
T ss_dssp             CCCEEESSCCCCCSSSBCCCCSSEEECCCCEETTTEEEECCSSSSCCCEEEESTTCBCC
T ss_pred             CeEEEECCCcCCCCCCcCCcCCCCEEEEeEecCCCEEEEEECCccCCeeEeecceEEEe
Confidence            457999999999999999999999999999889999999987776   99999999875

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.13  E-value=2.4e-11  Score=102.43  Aligned_cols=56  Identities=39%  Similarity=0.836  Sum_probs=53.0

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|.+||+|.|+...+.+||.|+++|+.||||++||+.+
T Consensus        34 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   89 (98)
T 1udl_A           34 VCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMT   89 (98)
T ss_dssp             SEEEEESSCCCCSSTTSCCCCTTCEEEECBCCSSSEEBCBSSSCBCCEETTSEEEC
T ss_pred             ceEEEECCCCCCCCCCccCCcCCCEEEEEEecCCCEEEEEECCcEEEEehHHeEEc
Confidence            56789999999999999999999999999998899999999999999999999876

>2m0y_A Dedicator of cytokinesis protein 1; apoptosis; NMR {Mus musculus}

Probab=99.12  E-value=3.9e-11  Score=95.46  Aligned_cols=55  Identities=40%  Similarity=0.839  Sum_probs=50.6

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEE---CCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC---HGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~---~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|.+||+|.|+... +|||.|++   +|+.||||++||+.+
T Consensus        11 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~W~~g~~~~~~g~~G~~P~~yv~~~   68 (74)
T 2m0y_A           11 EKYGVAFYNYDARGADELSLQIGDTVHILETY-EGWYRGYTLRKKSKKGIFPASYIHLK   68 (74)
T ss_dssp             CSCEEECSEECCCSSSBCCEETTEEEEEEEBS-SSCEEEEESSCSSCCEEECGGGEEEC
T ss_pred             CeEEEEceeeCCCCcCcccCCCCCEEEEEEcC-CCeEEEEECCCCCCEEEEehHHEEEe
Confidence            35799999999999999999999999999885 89999997   799999999999875

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=5.1e-11  Score=99.58  Aligned_cols=56  Identities=36%  Similarity=0.624  Sum_probs=51.6

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEe--ec--CCeEEEE--ECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEM--ID--EGWWRGY--CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek--~D--eGWW~Gr--~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|.+||+|.|+..  .+  +|||.|+  ++|+.||||+|||+.+
T Consensus        16 ~~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~   77 (94)
T 2e5k_A           16 HETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKA   77 (94)
T ss_dssp             CEEEEECSCBCCSSSSBCCBCTTCEEEECGGGCCSTTTTEEEEEESSSCCEEEEEGGGEEEC
T ss_pred             CeEEEECCcCCCCCCCCcCCCCCCEEEEEECcCCCCCCCcEEEEECCCCCEEEechHHeEEc
Confidence            4689999999999999999999999999987  34  8999999  7999999999999876

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B

Probab=99.12  E-value=5.8e-11  Score=104.14  Aligned_cols=58  Identities=31%  Similarity=0.540  Sum_probs=52.7

Q ss_pred             CccEEEEeccCCCCCCCCcccCCCCeEEEEE-----eecCCeEEEEE----------CCeeeeecCCCeeecC
Q psy194          468 LGYTAVALYDYQASADDEISFDPDDIITNIE-----MIDEGWWRGYC----------HGQYGLFPANYVSLQQ  525 (525)
Q Consensus       468 ~g~~AvALYDYqAqsedELSFskGDIItVLe-----k~DeGWW~Gr~----------~Gr~G~FPSnYVE~LQ  525 (525)
                      ....++|||+|.+...++|+|.+||+|.|+.     ..++|||.|++          +|+.||||+|||+.||
T Consensus        43 ~~~~~~Alydy~a~~~dELsf~~GDiI~Vl~~~~~~~~~~gWw~G~~~~t~~~~~~~~g~~G~fPsnyV~~l~  115 (115)
T 1bb9_A           43 FMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERVQ  115 (115)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEEC
T ss_pred             cceEEEECCccCCCCCCccCcCCCCEEEEeeccCCcccCCCeEEEEeCCCcccccccCCCEEEechHHEEECc
Confidence            3567999999999999999999999999999     67889999985          3889999999999886

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens}

Probab=99.11  E-value=9.3e-11  Score=97.08  Aligned_cols=54  Identities=33%  Similarity=0.666  Sum_probs=50.2

Q ss_pred             cEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEE--CCeeeeecCCCeeec
Q psy194          470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC--HGQYGLFPANYVSLQ  524 (525)
Q Consensus       470 ~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~--~Gr~G~FPSnYVE~L  524 (525)
                      ..++|||+|.+...++|+|.+||+|.|+.. +.+||.|++  +|+.||||++||+.+
T Consensus         4 ~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~~g~~G~~P~~yv~~~   59 (90)
T 3reb_B            4 IIVVALYDYVSWSPDDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARV   59 (90)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEC-SSSEEEEEETTTCCEEEEEGGGEEEE
T ss_pred             EEEEECCccCcCCcCcCCCCCCCEEEEEEe-CCCEEEEEECCCCCEEEEehhheEEC
Confidence            579999999999999999999999999997 578999997  899999999999875

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A

Probab=99.11  E-value=6.4e-12  Score=99.84  Aligned_cols=56  Identities=41%  Similarity=0.792  Sum_probs=52.0

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeee-eecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYG-LFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G-~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|.+||+|.|+...+++||.|+++|+.| |||++||+.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~gG~~P~~yv~~~   62 (71)
T 1hsq_A            6 KCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEM   62 (71)
T ss_dssp             SSCCCCSSCCCCSSSSSCCCCTTCCCBSCCCBTTTEECCBCSSSCSCCEETTTCCSC
T ss_pred             CeEEEECCCCCcCCCCccCCCCCCEEEEEEecCCCEEEEEECCeEEeEEChHHcEEC
Confidence            4578999999999999999999999999999889999999988887 9999999876

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus}

Probab=99.11  E-value=1.4e-10  Score=105.07  Aligned_cols=56  Identities=41%  Similarity=0.700  Sum_probs=52.4

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEee-cCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMI-DEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~-DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|.+||+|.|+... ++|||.|+++|+.||||++||+.+
T Consensus         5 ~~~~~Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~~gWw~g~~~g~~G~fP~~yv~~~   61 (142)
T 2kbt_A            5 FGTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEED   61 (142)
T ss_dssp             CCEEEESSCCCCSSSSBCCCCTTCEEEEEECCCSSSEEEEEETTEEEEEETTSEEES
T ss_pred             CeEEEECCccCCCCCCcCCCCCCCEEEEEEecCCCCeEEEEECCeeEEechHHEEEc
Confidence            45799999999999999999999999999984 789999999999999999999875

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus}

Probab=99.11  E-value=1.4e-10  Score=98.85  Aligned_cols=56  Identities=32%  Similarity=0.642  Sum_probs=52.6

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEE--CCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC--HGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~--~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+..+++|+|.+||+|.|+...+.+||.|+.  +|+.||||++||+.+
T Consensus        27 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   84 (109)
T 2yt6_A           27 VTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPA   84 (109)
T ss_dssp             CCEEEESSCCCCSSTTSCCCCTTCEEEEEECSCTTCEEEEESSSCCEEEECTTTEEES
T ss_pred             CEEEEECccCCCCCCCccCCCCCCEEEEEEccCCCcEEEEECCCCCEEEechHHcEEC
Confidence            46899999999999999999999999999988999999995  899999999999876

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} SCOP: b.34.2.0 PDB: 2kt1_A

Probab=99.10  E-value=6.2e-11  Score=99.06  Aligned_cols=56  Identities=27%  Similarity=0.579  Sum_probs=49.4

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEe-------------e--cCCeEEEEE--CCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEM-------------I--DEGWWRGYC--HGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek-------------~--DeGWW~Gr~--~Gr~G~FPSnYVE~L  524 (525)
                      +..++|||+|.++.+++|+|.+||+|.|+..             .  +.|||.|++  +|+.||||+|||+.+
T Consensus        11 ~~~~~Alydy~a~~~~ELsf~~GD~I~V~~~~~~~l~~~~~~~~~~~~~gW~~G~~~~~g~~G~fP~nyVe~i   83 (90)
T 3o5z_A           11 GFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDFPGTYVEFL   83 (90)
T ss_dssp             EEEEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHHTTCCTTGGGCHHHHCEEEEEETTTCCEEEEEGGGEEEE
T ss_pred             CcEEEEeeeECCCCCCccCCcCCCEEEEEeccccccccccccccCCCCCCceEEEeCCCCCEEEeehHHEEEe
Confidence            5789999999999999999999999999842             2  339999986  699999999999875

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A

Probab=99.10  E-value=3.9e-11  Score=98.13  Aligned_cols=56  Identities=38%  Similarity=0.722  Sum_probs=49.6

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEe---------------ecCCeEEEEE--CCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEM---------------IDEGWWRGYC--HGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek---------------~DeGWW~Gr~--~Gr~G~FPSnYVE~L  524 (525)
                      +..++|||+|.+..+++|+|.+||+|.|+..               .+.|||.|+.  +|+.||||+|||+.+
T Consensus         5 ~~~~~Alydy~~~~~~eLs~~~Gd~I~V~~~~~~~~~~~~~~e~~~~~~gW~~g~~~~~g~~G~fP~~yV~~~   77 (83)
T 3i5r_A            5 GYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYI   77 (83)
T ss_dssp             EEEEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHHHTCTTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEE
T ss_pred             CcEEEEccccCCCCCCccccCCCCEEEEeeccccccccccccccCCCCCccEEEEeCCCCCEEEEehHHEEEC
Confidence            5789999999999999999999999999954               2449999974  699999999999875

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens}

Probab=99.10  E-value=7.4e-11  Score=97.56  Aligned_cols=54  Identities=26%  Similarity=0.565  Sum_probs=50.0

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEE-ECCeeeeecCCCeee
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYVSL  523 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr-~~Gr~G~FPSnYVE~  523 (525)
                      ...++|||+|.+...++|+|.+||+|.|+.. +++||.|+ ++|+.||||+|||+.
T Consensus        31 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~   85 (86)
T 2jxb_A           31 EVIVIAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNAANRTGYVPSNYVER   85 (86)
T ss_dssp             CEEEEESSCCCCCSSSBCCCCTTEEEEEEEC-CSSEEEEECTTSCEEEEEGGGBCC
T ss_pred             ceEEEECccCCCCCCCEeccCCCCEEEEEec-CCCeEEEEECCCCEEEeehHHEEe
Confidence            4679999999999999999999999999997 67999999 689999999999974

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}

Probab=99.08  E-value=1.2e-10  Score=102.43  Aligned_cols=55  Identities=27%  Similarity=0.649  Sum_probs=51.1

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEE---CCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC---HGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~---~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.++..++|+|.+||+|.|+... +|||.|++   +|+.||||+|||+.+
T Consensus        59 ~~~~~Alydy~a~~~~eLsf~~Gd~i~vl~~~-~gWw~g~~~~~~g~~G~fP~nyV~~~  116 (119)
T 2rqr_A           59 ERHGVAIYNFQGSGAPQLSLQIGDVVRIQETC-GDWYRGYLIKHKMLQGIFPKSFIHIK  116 (119)
T ss_dssp             CEEEEBCSCBCCCSTTBCCBCTTCEEEEEEEE-TTEEEEEESSCTTCEEEEEGGGBCCC
T ss_pred             ceEEEEccccCCCCCCcccCcCCCEEEEEEcC-CCEEEEEECCCCCCEEEeChhHEEEe
Confidence            46899999999999999999999999999986 69999998   899999999999876

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus}

Probab=99.07  E-value=1.3e-10  Score=102.25  Aligned_cols=55  Identities=31%  Similarity=0.570  Sum_probs=51.2

Q ss_pred             cEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEE---CCeeeeecCCCeeec
Q psy194          470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC---HGQYGLFPANYVSLQ  524 (525)
Q Consensus       470 ~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~---~Gr~G~FPSnYVE~L  524 (525)
                      ..++|||+|.+..+++|+|.+||+|.|+...+++||.|++   .|+.||||+|||+.+
T Consensus         4 ~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~~~~g~~G~~P~nyv~~~   61 (120)
T 2kym_A            4 LFAVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRII   61 (120)
T ss_dssp             CEEEECSCBCCCSTTCCCBCTTCEEEEEEEETTTEEEEEESSSCSCCCCEEGGGEEEE
T ss_pred             EEEEEcccCCCCCCCccCCCCCCEEEEEEecCCCEEEEEECCCCCCEEEEchHHEEEc
Confidence            5799999999999999999999999999999999999985   688899999999875

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A

Probab=99.04  E-value=1.4e-11  Score=99.39  Aligned_cols=56  Identities=27%  Similarity=0.530  Sum_probs=51.5

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEE-ECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr-~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|.+||+|.|+...+.+||.|+ .+|+.||||+|||+..
T Consensus        20 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~~   76 (77)
T 1awj_A           20 ETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVEK   76 (77)
T ss_dssp             SSCCCCCCCBCCCCTTSCCBCSSSCCSCCCTTSSSBCCCCCSSSCCCCCBSTTCCCC
T ss_pred             ceEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCCEEEEECCCCEEEEehHHEEEc
Confidence            4578999999999999999999999999998888999999 5999999999999753

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.04  E-value=1.5e-10  Score=112.09  Aligned_cols=57  Identities=30%  Similarity=0.521  Sum_probs=52.6

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEE-----eecCCeEEEEE----------CCeeeeecCCCeeecC
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIE-----MIDEGWWRGYC----------HGQYGLFPANYVSLQQ  525 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLe-----k~DeGWW~Gr~----------~Gr~G~FPSnYVE~LQ  525 (525)
                      ...++|||+|.+...++|+|.+||+|.|+.     ..+.|||.|++          +|+.||||+|||+.|+
T Consensus       142 ~~~~rALYdY~a~~~dELSf~~GDiI~Vl~~~~~~~~ddgWw~G~~~~t~~~~~d~~G~~G~FPsnYVe~l~  213 (213)
T 1mv3_A          142 MFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFPENFTERVP  213 (213)
T ss_dssp             CEEEEESSCBCCCSTTCCCBCSSCEEEECCCSCGGGSCTTEEEEEEHHHHHTGGGGGGTCEEEESTTEEEEC
T ss_pred             ceEEEECCCcCCCCCCcCCcCCCCEEEEeecCCCCccCCCeeEEEeCCcccccccCCCCEEEecHHHeEECc
Confidence            468999999999999999999999999999     67889999995          5999999999999875

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=99.00  E-value=3.4e-10  Score=106.11  Aligned_cols=56  Identities=39%  Similarity=0.850  Sum_probs=53.5

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+..+++|+|.+||+|.|+...++|||.|+++|+.||||+|||+.+
T Consensus       158 ~~~~~al~~y~~~~~~eL~~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~  213 (217)
T 1gri_A          158 PTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPV  213 (217)
T ss_dssp             CCEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEECSSCEEEEEGGGEEEE
T ss_pred             ceEEEecCCccCCCCCcCCCCCCCEEEEEEeCCCCeEEEEECCeEEEEeHHHeEEC
Confidence            56899999999999999999999999999999999999999999999999999876

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1

Probab=98.99  E-value=7.7e-10  Score=89.29  Aligned_cols=51  Identities=24%  Similarity=0.541  Sum_probs=42.7

Q ss_pred             EeccCCCC---CCCCcccCCCCeEEEEEee-cCCeEEEE--ECCeeeeecCCCeeec
Q psy194          474 ALYDYQAS---ADDEISFDPDDIITNIEMI-DEGWWRGY--CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       474 ALYDYqAq---sedELSFskGDIItVLek~-DeGWW~Gr--~~Gr~G~FPSnYVE~L  524 (525)
                      ++|+|.+.   ..++|+|.+||+|.|+... +.|||.|+  ++|+.||||+|||+.+
T Consensus        20 a~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~nyV~~~   76 (78)
T 1k1z_A           20 EYYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY   76 (78)
T ss_dssp             CBSSCSCCSSSSCCCCCBCTTCEEEEEECCSSCSCEEEEETTTTEEEEECSTTEEES
T ss_pred             ECCCCCCCCCCCCCccCCCCCCEEEEEEcCCCCCeEEEEECCCCCEEEEehHHeEEC
Confidence            44455543   2489999999999999985 89999999  5899999999999875

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A

Probab=98.97  E-value=4.8e-10  Score=88.41  Aligned_cols=54  Identities=22%  Similarity=0.519  Sum_probs=43.6

Q ss_pred             EEEEeccCCCCC------CCCcccCCCCeEEEEEe-ecCCeEEEE--ECCeeeeecCCCeeec
Q psy194          471 TAVALYDYQASA------DDEISFDPDDIITNIEM-IDEGWWRGY--CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       471 ~AvALYDYqAqs------edELSFskGDIItVLek-~DeGWW~Gr--~~Gr~G~FPSnYVE~L  524 (525)
                      .+++++.|.+..      .++|+|.+||+|.|+.. .+.+||.|+  ++|+.||||+|||+.+
T Consensus         6 ~~~~~~~y~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~fP~~yv~~~   68 (70)
T 1gcq_C            6 KMEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY   68 (70)
T ss_dssp             EEEECSCBSSSSCCGGGCSCBCCBCTTCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             cceEEEEEEecCCCCCCCCCcCCcCCCCEEEEEeCCCCCCCeEEEeCCCCCEeEeehHHeEEC
Confidence            344555544443      44999999999999998 578999995  6899999999999875

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B

Probab=98.97  E-value=7e-10  Score=103.91  Aligned_cols=56  Identities=29%  Similarity=0.505  Sum_probs=53.1

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      +..++|||+|.+...++|+|.+||+|.|+...++|||.|+++|+.||||++||+.+
T Consensus        81 ~~~~~al~dy~a~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~g~~G~~P~~yv~~~  136 (193)
T 1ng2_A           81 GEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKS  136 (193)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEET
T ss_pred             ceeeeeccccCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCEEEEehHHeEEC
Confidence            46789999999999999999999999999998999999999999999999999876

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans}

Probab=98.97  E-value=5.5e-10  Score=102.39  Aligned_cols=55  Identities=22%  Similarity=0.602  Sum_probs=51.8

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEE-ECCeeeeecCCCeee
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYVSL  523 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr-~~Gr~G~FPSnYVE~  523 (525)
                      ...++|+|+|.+..+++|+|.+||+|.|+...+++||.|+ ++|+.||||+|||+.
T Consensus       118 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~nyv~~  173 (174)
T 3qwx_X          118 IEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQI  173 (174)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEECTTCCEEEEEGGGEEE
T ss_pred             ccEEEEecCcccCCCCccccccCCEEEEEEccCCCeEEEEECCCCEEEEChHHEEe
Confidence            4579999999999999999999999999999999999999 699999999999975

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B

Probab=98.88  E-value=9.7e-10  Score=102.94  Aligned_cols=56  Identities=23%  Similarity=0.513  Sum_probs=52.9

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|.+||+|.|+...++|||.|+++|+.||||++||+.+
T Consensus        11 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~g~~G~~P~~yv~~~   66 (193)
T 1ng2_A           11 LQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPL   66 (193)
T ss_dssp             CEEEECSSCBCCSSTTCCCBCTTCEEEEEECCTTSCCEEEECCCCCCCCGGGCCCS
T ss_pred             CcEEEEcCCcCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCeeeEechheEEee
Confidence            45799999999999999999999999999998999999999999999999999875

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}

Probab=98.86  E-value=2.3e-09  Score=108.43  Aligned_cols=56  Identities=29%  Similarity=0.630  Sum_probs=53.3

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+..+++|+|.+||+|.|+...++|||.|+++|+.||||+|||+.+
T Consensus       174 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~  229 (341)
T 2dyb_A          174 APRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKIL  229 (341)
T ss_dssp             CCEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEE
T ss_pred             CcEEEEEEeeCCCCCCcCCccCCCEEEEEEecCCCEEEEEECCcEEEechHHeEEc
Confidence            46899999999999999999999999999999999999999999999999999875

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=98.86  E-value=9.8e-10  Score=109.54  Aligned_cols=55  Identities=22%  Similarity=0.427  Sum_probs=51.7

Q ss_pred             cEEEEeccCC--CCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          470 YTAVALYDYQ--ASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       470 ~~AvALYDYq--AqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ..++|||+|.  +...++|+|.+||+|.|+...++|||.|+++|+.||||+|||+.+
T Consensus       238 ~~~~al~d~~~~a~~~~eL~~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~  294 (304)
T 2eyz_A          238 IYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLL  294 (304)
T ss_dssp             CCSCCSSCBCCCTTCSSCCCBCTTSCCEEEEECTTSCEEEEETTEEEECCCTTSCCC
T ss_pred             EEEEEeeeecCCCCCCCeecccCCCEEEEEEecCCCeEEEEECCceEEechHHEEEC
Confidence            5689999999  668999999999999999999999999999999999999999876

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=98.85  E-value=3.2e-09  Score=110.26  Aligned_cols=56  Identities=32%  Similarity=0.633  Sum_probs=53.4

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|+|+|.+..+++|+|.+||+|.|+...++|||.|+++|+.||||+|||+.+
T Consensus        30 ~~~~~al~~~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   85 (466)
T 2pz1_A           30 VVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLR   85 (466)
T ss_dssp             CEEEEESSCBCCCCTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             ccEEEEccccCCCCCCcCCCCCCCEEEEEEecCCCEEEEEECCcEEEEehhHeeec
Confidence            57899999999999999999999999999999999999999999999999999875

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1

Probab=98.82  E-value=4.6e-09  Score=81.92  Aligned_cols=43  Identities=26%  Similarity=0.603  Sum_probs=40.4

Q ss_pred             CCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          482 ADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       482 sedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      .+++|+|.+||+|.|+...+.+||.|+++|+.||||+|||+.+
T Consensus         2 ~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   44 (63)
T 1tuc_A            2 GPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL   44 (63)
T ss_dssp             CCCCCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CccccCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHHHEEEc
Confidence            4689999999999999998999999999999999999999876

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A

Probab=98.82  E-value=8.3e-10  Score=106.00  Aligned_cols=56  Identities=25%  Similarity=0.617  Sum_probs=52.8

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEE-ECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr-~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|.+||+|.|+...+.+||.|+ ++|+.||||+|||+.+
T Consensus       136 ~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~  192 (230)
T 2dvj_A          136 AEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY  192 (230)
T ss_dssp             CCCCBCCSCCCCSSSSSCCCCSSCBCCCCBCSCSSEEEEECTTSCEEEEEGGGSCCC
T ss_pred             ceeEEEeeeecCCCCCCccCcCCCEEEEEEccCCCcEEEEeCCCCEEEEehHHeEEc
Confidence            4578999999999999999999999999999999999999 8999999999999876

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A*

Probab=98.82  E-value=4.8e-09  Score=96.22  Aligned_cols=55  Identities=27%  Similarity=0.628  Sum_probs=50.4

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEE--CCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC--HGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~--~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||||.+..+++|+|.+||+|.|+.. +.+||.|++  +|+.||||+|||+.+
T Consensus        12 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~~g~~G~vP~~yv~~~   68 (175)
T 4d8k_A           12 DNLVIALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNFVAKA   68 (175)
T ss_dssp             -CEEEESSCBCCCSSSBCCBCTTCEEEEEEC-CSSEEEEEETTTCCEEEEEGGGEEET
T ss_pred             CcEEEEccCcCCcCCcccccccCCEEEEEcc-CCCEEEEEECCCCceeeecccccccc
Confidence            3579999999999999999999999999998 679999997  899999999999864

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens}

Probab=98.81  E-value=4e-09  Score=98.77  Aligned_cols=55  Identities=27%  Similarity=0.654  Sum_probs=50.6

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEE---CCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC---HGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~---~Gr~G~FPSnYVE~L  524 (525)
                      ..+++|+|+|.+..+++|+|.+||+|.|+...+ +||.|.+   +|+.||||+|||+.+
T Consensus        17 ~~~~~Alydf~~~~~~eLs~~~Gd~i~v~~~~~-~W~~g~~~~~~g~~G~fP~nyV~~~   74 (184)
T 3a98_A           17 ERHGVAIYNFQGSGAPQLSLQIGDVVRIQETCG-DWYRGYLIKHKMLQGIFPKSFIHIK   74 (184)
T ss_dssp             CCEEEESSCBCCSSTTBCCBCTTCEEEEEEEET-TEEEEEETTEEEEEEEEEGGGEEEE
T ss_pred             ceEEEEeeeeCCCCCCCCCcCCCCEEEEEecCC-CEEEEEEecCCCceEEECcceEEEe
Confidence            458999999999999999999999999999876 6999998   789999999999875

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=98.75  E-value=1.1e-08  Score=101.92  Aligned_cols=56  Identities=25%  Similarity=0.617  Sum_probs=52.9

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEE-ECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr-~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|.+||+|.|+...+.+||.|+ ++|+.||||++||+.+
T Consensus       134 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~  190 (304)
T 2eyz_A          134 AEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY  190 (304)
T ss_dssp             CCEEEECSCCCCSCSSSCCCCTTCEEEEEECCSSSEEEEECTTSCEEEEESTTEEEC
T ss_pred             ceeEEEEeeecCCCCCcCcccCCCEEEEEEecCCCcEEEEeCCCceeccchhccccc
Confidence            4579999999999999999999999999999899999999 7999999999999876

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}

Probab=98.73  E-value=4.2e-09  Score=85.17  Aligned_cols=45  Identities=27%  Similarity=0.584  Sum_probs=42.0

Q ss_pred             CCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          480 ASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       480 AqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      +...++|+|.+||+|.|+...+.+||.|+++|+.||||+|||+.+
T Consensus         2 a~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   46 (77)
T 2jmc_A            2 AMGPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL   46 (77)
T ss_dssp             CSSSCCCCCCTTCEEECCCCCCSSCCCEEETTEEECCCGGGEEEC
T ss_pred             CcCCCccCCCCCCEEEEEEecCCCEEEEEECCcEEEEEeeEEEEc
Confidence            467899999999999999998899999999999999999999876

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=98.71  E-value=1.3e-08  Score=101.43  Aligned_cols=55  Identities=22%  Similarity=0.588  Sum_probs=51.6

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEE-CCeeeeecCCCeee
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC-HGQYGLFPANYVSL  523 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~-~Gr~G~FPSnYVE~  523 (525)
                      ...++|||+|.+...++|+|.+||+|.|+...+.+||.|++ +|+.||||++||++
T Consensus       147 ~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~  202 (308)
T 3qwy_A          147 IEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQI  202 (308)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEECTTSCEEEEEGGGEEE
T ss_pred             ceeEEEeceEcCCCCCcCcCCCCCEEEEEEcCCCCeEEEEeCCCCeeEeccccccc
Confidence            45799999999999999999999999999999999999995 99999999999983

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=98.17  E-value=1.5e-09  Score=108.09  Aligned_cols=56  Identities=27%  Similarity=0.414  Sum_probs=51.2

Q ss_pred             ccEEEEeccCCCCC--CCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASA--DDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqs--edELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.++.  .++|+|.+||+|.|+...++|||.|+++|+.||||+|||+.+
T Consensus       237 ~~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~  294 (303)
T 2lqn_A          237 PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIF  294 (303)
Confidence            45799999998555  779999999999999999999999999999999999999876

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=98.70  E-value=1.3e-08  Score=107.19  Aligned_cols=55  Identities=33%  Similarity=0.694  Sum_probs=51.4

Q ss_pred             cEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEE--CCeeeeecCCCeeec
Q psy194          470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC--HGQYGLFPANYVSLQ  524 (525)
Q Consensus       470 ~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~--~Gr~G~FPSnYVE~L  524 (525)
                      ..++|||||.++.+++|+|.+||+|.|+...+.+||.|++  +|+.||||+|||+..
T Consensus        86 ~~~~alyd~~~~~~~el~~~~gd~i~v~~~~~~~ww~~~~~~~g~~G~~P~~yv~~~  142 (535)
T 2h8h_A           86 TTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPS  142 (535)
T ss_dssp             -CEEESSCBCCCSSSBCCBCTTCEEEEEECSSSSEEEEEETTTCCEEEEEGGGEEET
T ss_pred             cEEEEccccCCcCCCcCCcCCCCEEEEEEecCCCceEEEECCCCcceEecchhhccc
Confidence            4699999999999999999999999999999999999997  899999999999864

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}

Probab=98.67  E-value=2.5e-08  Score=107.46  Aligned_cols=56  Identities=30%  Similarity=0.482  Sum_probs=52.5

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEE--ECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY--CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr--~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.++.++||+|.+||+|.|+...++|||.|+  ++|+.|+||+|||+.+
T Consensus       442 ~~~~~aly~y~a~~~dELs~~~GD~i~v~~~~~~gW~~G~~~~~g~~G~fPsnyV~~~  499 (526)
T 2de0_X          442 AHNQIAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREK  499 (526)
T ss_dssp             CCEEEECSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             ccceEEeecCCCCCCCcCCcCCCCEEEEccccCCCeeEEEeCCCCCEEEECchheeEc
Confidence            4578999999999999999999999999999999999999  6899999999999875

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=98.66  E-value=2.5e-08  Score=102.26  Aligned_cols=56  Identities=29%  Similarity=0.703  Sum_probs=51.4

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEe-ecCCeEEEEEC-CeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEM-IDEGWWRGYCH-GQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek-~DeGWW~Gr~~-Gr~G~FPSnYVE~L  524 (525)
                      +..++|+|||.+..+++|+|.+||+|.|+.. .+.+||.|++. |+.|+||+|||+..
T Consensus        11 ~~~~~aly~~~~~~~~el~~~~gd~i~v~~~~~~~~ww~~~~~~g~~G~~P~~yv~~~   68 (450)
T 1k9a_A           11 GTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKR   68 (450)
T ss_dssp             TCEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSTTEEEEECTTCCEEEEEGGGEEEC
T ss_pred             CCEEEECCCcCccCCCcCCCCCCCEEEEeeccCCCCceEEEECCCceeeechhccccc
Confidence            5679999999999999999999999999998 57799999975 99999999999864

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=98.63  E-value=3.6e-09  Score=105.37  Aligned_cols=55  Identities=15%  Similarity=0.306  Sum_probs=0.0

Q ss_pred             cEEEEeccCCC--CCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          470 YTAVALYDYQA--SADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       470 ~~AvALYDYqA--qsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ..++|+|+|.+  ...++|+|.+||+|.|+...++|||.|+++|+.||||+|||+.|
T Consensus       248 ~~a~alyd~~~~~~~~~ELs~~~Gd~i~v~~~~~~~ww~g~~~g~~G~fP~~yv~~~  304 (308)
T 3qwy_A          248 AKAKVTFDRVPNAYDPTQLRVKKGQTVLVTQKMSNGMYKAELDGQIGSVPHTYLRFT  304 (308)
T ss_dssp             ---------------------------------------------------------
T ss_pred             cccccccccccccCCcccceeCCCCEEEEEEEcCCCcEEEEECCeeEEechHHeEEe
Confidence            46889999955  44599999999999999998899999999999999999999987

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}

Probab=98.60  E-value=5.1e-09  Score=110.64  Aligned_cols=57  Identities=46%  Similarity=0.798  Sum_probs=0.0

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeec-CCeEEEEEC-CeeeeecCCCeeecC
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMID-EGWWRGYCH-GQYGLFPANYVSLQQ  525 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~D-eGWW~Gr~~-Gr~G~FPSnYVE~LQ  525 (525)
                      ++.++|||+|.+...++|+|.+||+|.|+...+ .|||.|++. |+.||||+|||+.|+
T Consensus       428 ~~~~~alydy~~~~~~eLsf~~Gd~i~vl~~~~~~~Ww~g~~~~g~~G~~P~nyv~~i~  486 (486)
T 3haj_A          428 EVRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYVEAIQ  486 (486)
T ss_dssp             -----------------------------------------------------------
T ss_pred             CeEEEEccccCCCCCCcCccCCCCEEEEEEecCCCCeeEEEeCCCCEEEEeHHHceeCc
Confidence            568999999999999999999999999998774 599999987 999999999998863

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=97.95  E-value=9e-09  Score=102.57  Aligned_cols=56  Identities=27%  Similarity=0.593  Sum_probs=52.2

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEE-ECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr-~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|.+||+|.|+...+.+||.|. .+|+.||||++||+.+
T Consensus       125 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~~  181 (303)
T 2lqn_A          125 LEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKL  181 (303)
Confidence            3578999999999999999999999999999899999999 6899999999999875

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=98.54  E-value=8.4e-08  Score=98.32  Aligned_cols=55  Identities=33%  Similarity=0.670  Sum_probs=50.3

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEE--ECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY--CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr--~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||||.+..+++|+|.+||+|.|+.. +.+||.|+  ++|+.|+||+|||..+
T Consensus         8 ~~~~~al~~~~~~~~~el~~~~gd~~~v~~~-~~~W~~~~~~~~g~~G~~P~~yv~~~   64 (454)
T 1qcf_A            8 RIIVVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARV   64 (454)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEC-CTTEEEEEETTTCCEEEEEGGGEEET
T ss_pred             CeEEEECcccCCcCCCcCcccCCCEEEEEec-CCCCeEEEECCCCceEEecchhcccc
Confidence            4579999999999999999999999999987 47899999  6899999999999754

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=98.53  E-value=8.1e-08  Score=100.03  Aligned_cols=55  Identities=25%  Similarity=0.463  Sum_probs=51.2

Q ss_pred             cEEEEeccCCCCCCCCcccCCCCeEEEEEee-cCCeEEEEECCeeeeecCCCeeec
Q psy194          470 YTAVALYDYQASADDEISFDPDDIITNIEMI-DEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       470 ~~AvALYDYqAqsedELSFskGDIItVLek~-DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ..++|||||.+..+++|+|.+||+|.|+... +.+||.+++.|..|+||+|||+.+
T Consensus        44 ~~~~alyd~~~~~~~els~~~gd~~~v~~~~~~~~w~~~~~~~~~G~~P~~yv~~~   99 (495)
T 1opk_A           44 NLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPV   99 (495)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEECTTSSEEEEECSSCEEEEEGGGEEES
T ss_pred             cEEEEeCCcCCCCCCCCCccCCCEEEEeecCCCCCceeeeecCCcceecccccccc
Confidence            4799999999999999999999999999987 789999999999999999999864

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A

Probab=98.45  E-value=2.5e-07  Score=71.53  Aligned_cols=42  Identities=29%  Similarity=0.625  Sum_probs=39.1

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEEC
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH  510 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~  510 (525)
                      ...++|||+|.++..++|+|.+||+|.|+...+.+||.|+++
T Consensus        21 ~~~~~alydy~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~n   62 (62)
T 1g2b_A           21 KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVN   62 (62)
T ss_dssp             SCEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEEC
T ss_pred             ceEEEEeeeECCCCCCccCCCCCCEEEEEEecCCCEEEEEeC
Confidence            468999999999999999999999999999989999999864

>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.38  E-value=2.1e-07  Score=81.08  Aligned_cols=58  Identities=14%  Similarity=0.229  Sum_probs=51.0

Q ss_pred             CCccEEEEeccC--CCCCCCCcccCCCCeEEEEEeecCCeEEEE-ECCeeeeecCCCeeec
Q psy194          467 DLGYTAVALYDY--QASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       467 ~~g~~AvALYDY--qAqsedELSFskGDIItVLek~DeGWW~Gr-~~Gr~G~FPSnYVE~L  524 (525)
                      .....++|+|+|  ...+..+|+|.+|++|.||...+++||.|+ ..|+.|++|.+||..+
T Consensus        37 ~vl~~~~a~~~f~~~k~g~~DLpfkkGE~LeVI~~~e~~wwLcRNs~GkyGyVP~~yl~~~   97 (102)
T 1ri9_A           37 RVLYSTKVTTSITSKKWGTRDLQVKPGESLEVIQTTDDTKVLCRNEEGKYGYVLRSYLADN   97 (102)
T ss_dssp             CCSSCCBCCTTSCSSCCCTTBCCCCTTCBCEEEEESSSSEEEEEETTTEEEEEEGGGSCC-
T ss_pred             eEEEEEEEeeccccccCCcccCCcCCCCEEEEEEeCCCCEEEEECCCCCCCceeHHHhccc
Confidence            345578889999  667789999999999999999999999999 6999999999999865

>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus}

Probab=98.37  E-value=2.4e-07  Score=77.95  Aligned_cols=52  Identities=25%  Similarity=0.378  Sum_probs=46.1

Q ss_pred             EEEEeccCCCCCCCCcccCCCCeEEEEEee--cCCeEEEEE----CCeeeeecCCCee
Q psy194          471 TAVALYDYQASADDEISFDPDDIITNIEMI--DEGWWRGYC----HGQYGLFPANYVS  522 (525)
Q Consensus       471 ~AvALYDYqAqsedELSFskGDIItVLek~--DeGWW~Gr~----~Gr~G~FPSnYVE  522 (525)
                      .+++||||.+....+|+|.+|+++.||+..  +++||.++.    .++.||||+|||.
T Consensus        19 ~~valydF~Ar~~~ELS~~kGd~vevle~~~~~peW~lvr~~~~~~~qeGlVPsnyl~   76 (82)
T 1u3o_A           19 LTVVLQDFSAAHSSELSIQVGQTVELLERPSERPGWCLVRTTERSPPQEGLVPSSTLC   76 (82)
T ss_dssp             EEECSSCBCCCSTTCCCBCTTCEEEESSCTTSSTTEEEEEESSSSSCEEEEEEGGGSC
T ss_pred             EEEEEeeecCCCCCeeeEcCCCEEEEEecCCCCCCEEEEEECCCCCCcEeeccccEEe
Confidence            578999999999999999999999999876  479999995    2478999999984

>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}

Probab=98.18  E-value=8e-07  Score=97.88  Aligned_cols=55  Identities=29%  Similarity=0.394  Sum_probs=47.9

Q ss_pred             cEEEEeccCC---CCCCCCcccCCCCeEEEEEe-----ecCCeEEEE--ECCeeeeecCCCeeec
Q psy194          470 YTAVALYDYQ---ASADDEISFDPDDIITNIEM-----IDEGWWRGY--CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       470 ~~AvALYDYq---AqsedELSFskGDIItVLek-----~DeGWW~Gr--~~Gr~G~FPSnYVE~L  524 (525)
                      .+++|||||.   +..+..|+|++||+|.++..     .++|||.|+  ++|+.|+||++||..|
T Consensus       574 ~~~~Al~d~~~~~~~~~~~L~f~kGDlI~l~~~~~~~~~~~~W~~G~~~~~g~~G~fP~~~V~~l  638 (655)
T 3pvl_A          574 KYVVALQDNPNPAGEESGFLSFAKGDLIILDHDTGEQVMNSGWANGINERTKQRGDFPTDCVYVM  638 (655)
T ss_dssp             CEEEESSCCCC-----CCBCCCCTTCEEEESSCCHHHHHHSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             hhhhHHhhcccCCCCCCCcccccCCCEEEEccccCcccCCCCeEEEEeCCCCceEEeEhhhEEEC
Confidence            5799999999   67888999999999999887     578999999  6899999999999876

>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo sapiens} PDB: 2gto_A

Probab=98.08  E-value=2.2e-06  Score=74.08  Aligned_cols=54  Identities=31%  Similarity=0.494  Sum_probs=47.8

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeec--CCeEEEE-ECCeeeeecCCCeee
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMID--EGWWRGY-CHGQYGLFPANYVSL  523 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~D--eGWW~Gr-~~Gr~G~FPSnYVE~  523 (525)
                      ...++|+++ ...+..+|+|.+|++|.||.+.+  +|||.|+ ..|+.|++|.+||+.
T Consensus        28 l~~a~a~~~-~k~g~~dLp~~~GE~LeII~~~e~p~g~Wl~RN~~G~~GyVp~~~v~v   84 (96)
T 2gtj_A           28 IHLAKACCD-VKGGKNELSFKQGEQIEIIRITDNPEGKWLGRTARGSYGYIKTTAVEI   84 (96)
T ss_dssp             CEEEEESSC-EECTTSCCEECTTCCEEEEECTTCSSSCCEEECTTCCBCCCCGGGEEE
T ss_pred             EEEEEEeec-CCCCcccCCcCCCCEEEEEEccCCCCCeEEEECCCCCCCccchhhEEE
Confidence            458899999 46688999999999999999875  6899999 799999999999975

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=98.02  E-value=5.4e-06  Score=76.97  Aligned_cols=55  Identities=33%  Similarity=0.590  Sum_probs=49.8

Q ss_pred             cEEEEeccCCCCCCCCcccCCCCeEEEEEeecCC---eEEEEECCeeeeecCCCeeec
Q psy194          470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEG---WWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       470 ~~AvALYDYqAqsedELSFskGDIItVLek~DeG---WW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ....++|+|.+....+|.|..|++|.|+...+.+   ||.+.++|+.|+||.+||+.+
T Consensus       171 ~~~~al~d~~~~~~~eLa~~~G~~i~vl~~~~~~~~~Ww~~~~~~~~G~~P~~yv~~~  228 (239)
T 1ycs_B          171 GVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLY  228 (239)
T ss_dssp             GEEEESSCBCCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEETTEEEEEEGGGEECC
T ss_pred             ceEEEEeccCCCCCCcccccCCCEEEEEEecCCCCCCEEEEEECCcEEEeehHHeeEC
Confidence            3578999999999999999999999999877654   999999999999999999865

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=97.98  E-value=4.3e-06  Score=85.93  Aligned_cols=52  Identities=25%  Similarity=0.592  Sum_probs=46.7

Q ss_pred             ccEEEEeccCCCCCCCC-------cccCCCCeEEEEEeecCCeEEEEE---CCeeeeecCCC
Q psy194          469 GYTAVALYDYQASADDE-------ISFDPDDIITNIEMIDEGWWRGYC---HGQYGLFPANY  520 (525)
Q Consensus       469 g~~AvALYDYqAqsedE-------LSFskGDIItVLek~DeGWW~Gr~---~Gr~G~FPSnY  520 (525)
                      .++++|+|||.+..+++       |+|.+||+|.|+...+++||.+++   .|..|+||+++
T Consensus        38 ~~~vrAlfdY~~~~d~d~P~~e~~LsF~~GDiL~V~~~~d~~WWqar~~~~~g~~GlIPS~~   99 (337)
T 4dey_A           38 AFAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPV   99 (337)
T ss_dssp             CEEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHH
T ss_pred             cEEEEEccccCCCCCCCCCcccccccccCCCEEEEEecCCCCeEEEEECCCCCCccEecCHH
Confidence            46899999999987664       999999999999999999999997   57899999976

>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=97.72  E-value=5.5e-05  Score=64.84  Aligned_cols=55  Identities=16%  Similarity=0.195  Sum_probs=45.1

Q ss_pred             EEEEeccCCCCCCCCcccCCCCeEEEEEeec----CCeEEEEECCeeeeecCCCeeecC
Q psy194          471 TAVALYDYQASADDEISFDPDDIITNIEMID----EGWWRGYCHGQYGLFPANYVSLQQ  525 (525)
Q Consensus       471 ~AvALYDYqAqsedELSFskGDIItVLek~D----eGWW~Gr~~Gr~G~FPSnYVE~LQ  525 (525)
                      .+.+..++.+...-+|+|.+|++|.||+..|    ..||....+|..||||++|+++++
T Consensus        19 LY~~t~~~~~tq~~dl~l~~GdlVAVl~k~Dp~Gn~srW~Vdtgg~~GyvPs~yLe~~~   77 (92)
T 1ug1_A           19 LFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYN   77 (92)
T ss_dssp             EEEESSCCCCCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEECSSSEEEEEGGGEEECC
T ss_pred             eEEeccCcCCCCceeeeecCCCEEEEEecCCCCCCCcceEEECCCcEEeeEhhhceEcc
Confidence            5666777888888999999999999999865    344445559999999999999873

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=97.71  E-value=2.6e-05  Score=80.83  Aligned_cols=55  Identities=13%  Similarity=0.319  Sum_probs=47.4

Q ss_pred             CccEEEEeccCCCCCCCCcccCCCCeEEEEEe---ecCCeEEEEE-CC-----eeeeecCCCee
Q psy194          468 LGYTAVALYDYQASADDEISFDPDDIITNIEM---IDEGWWRGYC-HG-----QYGLFPANYVS  522 (525)
Q Consensus       468 ~g~~AvALYDYqAqsedELSFskGDIItVLek---~DeGWW~Gr~-~G-----r~G~FPSnYVE  522 (525)
                      ..++++|+|||.+..+.+|+|.+||+|.|+..   .+.+||.+++ +.     ..|+||++|+.
T Consensus       105 ~~~~vral~dy~~~~~~~Lsf~~Gdil~V~~~~~~~d~~wW~a~~~~~~~~~~~~G~IPs~~~~  168 (391)
T 3tsz_A          105 DSFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRA  168 (391)
T ss_dssp             CCEEEEECSCBCCSSTTBCCBCTTCEEEEEESSGGGSSSEEEEEEECGGGCEEEEEEEECHHHH
T ss_pred             cccccccccccCCCCCCcceEccCCEEEEEeccCCCCCCeEEEEEeCCCCCcccCCEecCHHHH
Confidence            35788899999999999999999999999998   5789999995 22     48999999874

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=97.69  E-value=2.6e-05  Score=86.23  Aligned_cols=54  Identities=30%  Similarity=0.602  Sum_probs=48.0

Q ss_pred             ccEEEEeccCCCCCCCC-----cccCCCCeEEEEEeecCCeEEEEEC------CeeeeecCCCee
Q psy194          469 GYTAVALYDYQASADDE-----ISFDPDDIITNIEMIDEGWWRGYCH------GQYGLFPANYVS  522 (525)
Q Consensus       469 g~~AvALYDYqAqsedE-----LSFskGDIItVLek~DeGWW~Gr~~------Gr~G~FPSnYVE  522 (525)
                      .++++|+|+|.+..+++     |+|++||+|.|+...+.+||.+++.      +..||||++|+.
T Consensus       427 ~~~vrAl~dy~~~~d~~~p~~~LsF~~GDil~v~~~~~~~WW~a~~~~~~~~~~~~G~iPs~~~~  491 (721)
T 2xkx_A          427 GFYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRV  491 (721)
T ss_pred             ceeEEEeeccCcCCCCCCccccccccCCCEEEEeecCCCCeEEEEECCCCCccCccceeecHHHH
Confidence            56789999999999888     9999999999999989999999953      356999999974

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=97.59  E-value=4.7e-05  Score=77.28  Aligned_cols=53  Identities=13%  Similarity=0.386  Sum_probs=43.4

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCC---------eEEEEEC------CeeeeecCCCe
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEG---------WWRGYCH------GQYGLFPANYV  521 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeG---------WW~Gr~~------Gr~G~FPSnYV  521 (525)
                      .++++|+|+|.+..+.+|+|.+||++.|+...+.|         ||.+.+-      +..|+||++|+
T Consensus         4 sfyVRalfdy~~~~~~eL~F~kGDil~V~dt~~~~~~~~~~~~gwW~A~~~~~~~~~~~~G~IPs~~~   71 (308)
T 3kfv_A            4 SFYIRTHFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIPNQSR   71 (308)
T ss_dssp             CEEEEECSCBCCCSSSBCCBCTTCEEEEEEC-------------CEEEEEECTTSCEEEEEEECCHHH
T ss_pred             cEEEEEecCcCCCCcccCCCccCCEEEEccccCCCcccccccCceEEEEecCCCCCcCCCCeeechHH
Confidence            46788999999999999999999999999987655         9999842      27799999876

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=97.51  E-value=8.3e-05  Score=67.50  Aligned_cols=53  Identities=38%  Similarity=0.779  Sum_probs=49.7

Q ss_pred             cEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCee
Q psy194          470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS  522 (525)
Q Consensus       470 ~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE  522 (525)
                      ..+++||+|.+....+|+|..|+++.|+...+.+||.+...|+.|+||.+|+.
T Consensus        15 ~~~~al~d~~~~~~~el~~~~Gd~~~v~~~~~~~w~~~~~~g~~gl~p~~~v~   67 (222)
T 3ehr_A           15 KVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVA   67 (222)
T ss_dssp             EEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEEETTEEEEEEHHHHH
T ss_pred             eEEEEeCCcCCCCCCcccccCCCEEEEeccccchhHhcccCCcceeechhhcc
Confidence            46899999999999999999999999999999999999999999999998874

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=97.51  E-value=8.9e-05  Score=79.01  Aligned_cols=54  Identities=13%  Similarity=0.364  Sum_probs=47.3

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEe---ecCCeEEEEE---CC---eeeeecCCCee
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEM---IDEGWWRGYC---HG---QYGLFPANYVS  522 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek---~DeGWW~Gr~---~G---r~G~FPSnYVE  522 (525)
                      .++++++|+|.+..+.+|+|.+||+|.|+..   .+.+||.+++   ++   ..|+||++|+.
T Consensus        98 s~yVralfdy~~~~~~~LsF~~GDIL~V~d~~~~~d~~wW~A~~~~~~~~~~~~GlIPs~~~~  160 (468)
T 3shw_A           98 SFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRA  160 (468)
T ss_dssp             CEEEEECSCBCCSSTTBCCBCTTCEEEEEESSGGGCTTEEEEEEECTTSCEEEEEEEECHHHH
T ss_pred             ccccccccCcCCCCCCCceEccCCEEEEeecccCCCCCeEEEEEcCCCCcccccceecCHHHH
Confidence            4678899999999999999999999999997   5679999984   33   68999999874

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=97.37  E-value=8.4e-05  Score=74.18  Aligned_cols=41  Identities=24%  Similarity=0.498  Sum_probs=36.0

Q ss_pred             CCCcccCCCCeEEEEEeecCCeEEEEECC------eeeeecCCCeee
Q psy194          483 DDEISFDPDDIITNIEMIDEGWWRGYCHG------QYGLFPANYVSL  523 (525)
Q Consensus       483 edELSFskGDIItVLek~DeGWW~Gr~~G------r~G~FPSnYVE~  523 (525)
                      ..+|+|.+||+|.|+...+.+||.+++.+      ..||||+||+..
T Consensus        20 ~~eLsf~~GDil~V~~~~d~~WW~a~~~~~~~~~~~~G~iPsny~~e   66 (295)
T 1kjw_A           20 SQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVE   66 (295)
T ss_dssp             SSBCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHH
T ss_pred             CcCCcCCCCCEEEEEEeCCCCeEEEEECCCCCccCceeEeecHHHHH
Confidence            45899999999999999999999999643      789999999853

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=97.26  E-value=0.0002  Score=71.81  Aligned_cols=52  Identities=29%  Similarity=0.635  Sum_probs=38.3

Q ss_pred             ccEEEEeccCCCCCCC-----CcccCCCCeEEEEEeecCCeEEEEE------CCeeeeecCCC
Q psy194          469 GYTAVALYDYQASADD-----EISFDPDDIITNIEMIDEGWWRGYC------HGQYGLFPANY  520 (525)
Q Consensus       469 g~~AvALYDYqAqsed-----ELSFskGDIItVLek~DeGWW~Gr~------~Gr~G~FPSnY  520 (525)
                      .++++|+|||.+..++     .|+|.+||++.|+...+++||.++.      .+..|+||+..
T Consensus         5 s~yvRa~fdY~~~~D~~~P~~gL~F~~gDiL~V~~~~d~~wWqA~~v~~~~~~~~~GlIPS~~   67 (292)
T 3tvt_A            5 SLYVRALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDEWWQARRVLGDNEDEQIGIVPSKR   67 (292)
T ss_dssp             CCEEEECSCBCC---------CCCBCTTCEEEEEECCSSSEEEECCCCC--------EEECHH
T ss_pred             eEEEEEeccCCCCCCCCCCCCcCCcCCCCEEEEeecCCCCeEEEEEeCCCCCccceeEEeChH
Confidence            3689999999998765     5999999999999999999999983      23479999853

>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}

Probab=97.15  E-value=0.00034  Score=69.51  Aligned_cols=53  Identities=15%  Similarity=0.278  Sum_probs=44.6

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEE-ECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr-~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|+|||.+.   +++|.+|+.++++...+..||.++ .+|..|++|++|+.+.
T Consensus       198 ~~~v~al~dy~~~---e~~~~kge~~~l~~~s~~~wW~v~~~~G~~g~vPs~~~~ip  251 (283)
T 3pe0_A          198 RLPLLAVCDYKQV---EVTVHKGDECQLVGPAQPSHWKVLSSSGSEAAVPSVCFLVP  251 (283)
T ss_dssp             CEEEEECSCEECS---SCEECTTCEEEEEEECSTTEEEEECC---EEEEEGGGEECC
T ss_pred             CceEEeecCccCC---cccccCCCEEEEeeCCCCCceEEEcCCCCEeeccceEEeeC
Confidence            3689999999774   799999999999999888999999 6889999999998753

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}

Probab=96.92  E-value=1.1e-05  Score=81.46  Aligned_cols=53  Identities=15%  Similarity=0.221  Sum_probs=42.3

Q ss_pred             EEEeccCCC----CCCCCccc--CCCCeEEEEEeecCCeEEEEECCeee---eecCC-Ceeec
Q psy194          472 AVALYDYQA----SADDEISF--DPDDIITNIEMIDEGWWRGYCHGQYG---LFPAN-YVSLQ  524 (525)
Q Consensus       472 AvALYDYqA----qsedELSF--skGDIItVLek~DeGWW~Gr~~Gr~G---~FPSn-YVE~L  524 (525)
                      +.|+|+|.+    ..+.+|+|  ..||+|.|+...++|||.|+++|+.|   |||.+ ||+.+
T Consensus       269 ~~a~yd~~~~~~~~~e~eL~~~~~~GD~I~v~~~~d~gWw~Ge~~g~~G~~glfP~~~~v~~~  331 (341)
T 2dyb_A          269 LKDLLELTRREFQREDIALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRLFPWKLHITQK  331 (341)
T ss_dssp             HHHHHHHHHHHHTCSCEEEEEECSSSCEEECCSHHHHHHHHHHHTTSCCBTTBCSSCEEEEEC
T ss_pred             hhhhhhhhhhhcCCCcccccCCCCCCCEEEEeeecCCCEeEEEECCCCCCCceecceeEEEec
Confidence            357888876    45566666  89999999999999999999765555   99998 77654

>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}

Probab=95.48  E-value=0.0081  Score=63.70  Aligned_cols=52  Identities=19%  Similarity=0.130  Sum_probs=46.9

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEE-ECCeeeeecCCCeee
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYVSL  523 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr-~~Gr~G~FPSnYVE~  523 (525)
                      ..++.|||||..   .++++.+|++++++..++..||.+. .+|..|++|+.|+.+
T Consensus       283 ~~~V~alcdy~~---~e~~i~kge~~~L~~ns~~~~W~V~~~~G~~~~vPavcf~i  335 (450)
T 3r6n_A          283 PIILRALCDYKQ---DQKIVHKGDECILKDNNERSKWYVTGPGGVDMLVPSVGLII  335 (450)
T ss_dssp             CCEEEESSCEEE---TTEEECTTCEEEEEECSSSSEEEEECSSSCCEEEEGGGEEC
T ss_pred             CceEEEeccccC---CeeeEecCCEEEEecCCCCCceEEecCCCCeeccceeEEec
Confidence            568999999994   7899999999999999999999999 578999999999865

>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}

Probab=81.95  E-value=2.5  Score=33.62  Aligned_cols=38  Identities=18%  Similarity=0.502  Sum_probs=31.9

Q ss_pred             cccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          486 ISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       486 LSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      -.+.+|+.+.|+... .+|+....+|..||+.+.||...
T Consensus        25 ~~l~~G~~v~v~~~~-~~W~kV~~~g~~GwV~~~yl~~~   62 (74)
T 2krs_A           25 GTLRNNDKVEIIKEV-DGWYEIRFNGKVGYASKSYITIV   62 (74)
T ss_dssp             EEEETTCEEEEEEEE-TTEEEEEETTEEEEECSSSEEES
T ss_pred             EEECCCCEEEEEEEe-CCEEEEEECCeEEEEEhHHcCCC
Confidence            457789999998864 58999999999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	525
d1gcqa_	56	b.34.2.1 (A:) Growth factor receptor-bound protein	1e-20
d1utia_	57	b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona	2e-20
d1uj0a_	58	b.34.2.1 (A:) Signal transducing adaptor molecule	3e-20
d1sema_	58	b.34.2.1 (A:) Growth factor receptor-bound protein	9e-20
d1udla_	98	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	2e-19
d1gria1	56	b.34.2.1 (A:1-56) Growth factor receptor-bound pro	5e-19
d1u06a1	55	b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chic	6e-19
d1jo8a_	58	b.34.2.1 (A:) Actin binding protein ABP1 {Baker's	1e-18
d1k4us_	62	b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId	2e-18
d1ycsb2	63	b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [	2e-18
d1ujya_	76	b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens	3e-18
d1oota_	58	b.34.2.1 (A:) Hypothetical protein YFR024c {Baker'	4e-18
d1uhfa_	69	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	9e-18
d1fmka1	64	b.34.2.1 (A:82-145) c-src protein tyrosine kinase	2e-17
d1efna_	57	b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase,	3e-17
d1arka_	60	b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo	3e-17
d2iima1	62	b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 d	6e-17
d2hspa_	71	b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (	7e-17
d1j3ta_	74	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	8e-17
d1ckaa_	57	b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse	9e-17
d1ng2a1	58	b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic	1e-16
d1opka1	57	b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domai	1e-16
d1ng2a2	118	b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic	4e-16
d1uhca_	79	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	5e-16
d1awwa_	67	b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Hom	6e-16
d2rn8a1	53	b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus	7e-16
d1ugva_	72	b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA062	8e-16
d1wlpb1	53	b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic	9e-16
d1qcfa1	65	b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Hu	1e-15
d1uffa_	93	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	1e-15
d1k9aa1	71	b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (cs	1e-15
d1u5sa1	71	b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [Tax	2e-15
d1i07a_	59	b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus	5e-15
d1ue9a_	80	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	6e-15
d1gl5a_	67	b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musc	7e-15
d1bb9a_	83	b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicu	3e-14
d2v1ra1	67	b.34.2.1 (A:10-76) Peroxisomal membrane protein Pe	4e-14
d1wfwa_	74	b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [Ta	6e-14
d1spka_	72	b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RI	1e-12
d1zuua1	56	b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyc	2e-12
d1phta_	83	b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-a	1e-11
d1wiea_	96	b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human	2e-11
d1gcqc_	69	b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mu	5e-11
d1t0ha_	96	b.34.2.1 (A:) SH3-like domain of the L-type calciu	6e-10
d1i1ja_	106	b.34.2.1 (A:) Melanoma inhibitory activity protein	2e-09
d1kjwa1	96	b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicu	2e-09
d1ug1a_	92	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	1e-08
d1vyva1	145	b.34.2.1 (A:71-215) SH3-like domain of the L-type	2e-06
d1f5na1	300	a.114.1.1 (A:284-583) Interferon-induced guanylate	1e-04
d1vyua1	136	b.34.2.1 (A:39-174) SH3-like domain of the L-type	3e-04
d2es4d1	280	a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)	0.002
d2es4d1	280	a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)	0.003
d1sa0e_	138	a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus	0.002

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.8 bits (205), Expect = 1e-20
 Identities = 22/50 (44%), Positives = 29/50 (58%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
             AL+D+    D E+ F   D I  ++  D  WW+G CHGQ G+FP NYV
Sbjct: 4   VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 53

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.4 bits (204), Expect = 2e-20
 Identities = 21/50 (42%), Positives = 32/50 (64%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           A ALYD++A  +DE+ F   +++  ++  +  WW G  H + GLFPANYV
Sbjct: 4   ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 53

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.0 bits (203), Expect = 3e-20
 Identities = 21/52 (40%), Positives = 34/52 (65%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
             ALYD++A  D+E++F   ++IT ++  D  WW+G  H   GLFP+N+V+ 
Sbjct: 5   VRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTT 56

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

 Score = 80.5 bits (199), Expect = 9e-20
 Identities = 19/50 (38%), Positives = 28/50 (56%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
             AL+D+      E++F   D+IT I   D  WW G  + + G+FP+NYV
Sbjct: 5   VQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.1 bits (200), Expect = 2e-19
 Identities = 23/71 (32%), Positives = 35/71 (49%)

Query: 453 EELRQQGTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQ 512
           + L                 +A+YDY A+ +DE+SF    +I  +   D  WW+G  +G 
Sbjct: 18  KLLGPSSERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGV 77

Query: 513 YGLFPANYVSL 523
            GLFP+NYV +
Sbjct: 78  TGLFPSNYVKM 88

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.6 bits (194), Expect = 5e-19
 Identities = 20/54 (37%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEM-IDEGWWRGYCHGQYGLFPANYVSLQ 524
           A+A YD++A+ADDE+SF   DI+  +    D+ W++   +G+ G  P NY+ ++
Sbjct: 3   AIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMK 56

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 55

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 78.2 bits (193), Expect = 6e-19
 Identities = 17/49 (34%), Positives = 28/49 (57%)

Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           +ALYDYQ  +  E++    DI+T +   ++ WW+   + + G  PA YV
Sbjct: 4   LALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 52

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.5 bits (191), Expect = 1e-18
 Identities = 28/55 (50%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH--GQYGLFPANYVSL 523
            A A YDY A+ D+E++F  +D I NIE +D+ WW G     G  GLFP+NYVSL
Sbjct: 2   WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSL 56

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.1 bits (190), Expect = 2e-18
 Identities = 17/53 (32%), Positives = 29/53 (54%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           G    AL+ Y+A+  +++ F   DII  +  ++E W  G   G+ G+FP  +V
Sbjct: 5   GSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFV 57

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.7 bits (189), Expect = 2e-18
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDE---GWWRGYCHGQYGLFPANYVSL 523
             AL+DY+   DDE+     D +T I   DE    WW    + + G  P N + L
Sbjct: 7   IYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGL 61

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.8 bits (189), Expect = 3e-18
 Identities = 18/53 (33%), Positives = 30/53 (56%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
                A ++++ + +DE+S    DII    + + GWW G  +G+ G FP+NYV
Sbjct: 10  QLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYV 62

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 76.0 bits (187), Expect = 4e-18
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDE--GWWRGYCHGQYGLFPANYVSL 523
           AVALY +      ++ F   D+IT ++  D    WW G  +G+ G+FPANYV L
Sbjct: 4   AVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVEL 57

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.6 bits (186), Expect = 9e-18
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           G   +ALY Y +    +++F   + I   +  D  WW G    + G+FP+NYV
Sbjct: 8   GEEYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYV 59

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 64

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.4 bits (183), Expect = 2e-17
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY--CHGQYGLFPANYV 521
           T VALYDY++  + ++SF   + +  +   +  WW  +    GQ G  P+NYV
Sbjct: 4   TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.6 bits (181), Expect = 3e-17
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY--CHGQYGLFPANYVS 522
           VALYDY+A  +D++SF   +    +   +  WW       G+ G  P+NYV+
Sbjct: 4   VALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVA 55

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.2 bits (180), Expect = 3e-17
 Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC--HGQYGLFPANYV 521
           G    A+YDY A+  DE+SF   D I N++ IDEGW  G     G+ G+ PANYV
Sbjct: 3   GKIFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYV 57

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.6 bits (178), Expect = 6e-17
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWW-RGYCHGQYGLFPANYV 521
             +AL+ Y+ S D ++ F+  + +  +E   E W  +    GQ G  P N+V
Sbjct: 8   LVIALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFV 59

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.9 bits (179), Expect = 7e-17
 Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHG-QYGLFPANYV 521
               AL+DY+A  +DE++F    II N+E  + GWWRG   G +   FP+NYV
Sbjct: 7   CAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYV 59

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.9 bits (179), Expect = 8e-17
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
              A AL  + A  D+ ++F   DIIT +E   E WW G  HG  G FP +YV +
Sbjct: 10  NLKAQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKI 63

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.0 bits (177), Expect = 9e-17
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRG-YCHGQYGLFPANYV 521
             AL+D+  + ++++ F   DI+   +  +E WW      G+ G+ P  YV
Sbjct: 4   VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 54

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.2 bits (177), Expect = 1e-16
 Identities = 13/51 (25%), Positives = 27/51 (52%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           T  A+ DY+ ++  E++    D++  +E  + GWW      + G  PA+++
Sbjct: 4   TYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFL 54

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.7 bits (176), Expect = 1e-16
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 473 VALYDYQASADDEISFDPDDIITNIEMID-EGWWRGYCHGQYGLFPANYVSL 523
           VALYD+ AS D+ +S    + +  +       W         G  P+NY++ 
Sbjct: 4   VALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITP 55

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.4 bits (177), Expect = 4e-16
 Identities = 16/53 (30%), Positives = 24/53 (45%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           G   VA+  Y A   DE+S    + +  I  + +GWW        G FP+ Y+
Sbjct: 14  GEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYL 66

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.7 bits (173), Expect = 5e-16
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 464 TEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMIDE----GWWRGYCHGQYGLFPAN 519
           +E +      A+Y ++A   +E+S   +  +  +E  D      WW    +G+ G  P+N
Sbjct: 8   SEAEGNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSN 67

Query: 520 YV 521
           Y+
Sbjct: 68  YI 69

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.2 bits (172), Expect = 6e-16
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC-HGQYGLFPANYV 521
              VALYDY     +++     D    +E  +  WWR    +GQ G  P+NYV
Sbjct: 9   KKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYV 61

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

 Score = 69.5 bits (170), Expect = 7e-16
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRG-YCHGQYGLFPANYV 521
           +ALYDYQ +   E++   D+    ++  +  WWR    +G  G  P++Y+
Sbjct: 2   IALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYL 51

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (171), Expect = 8e-16
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMID-EGWWRGYCHGQYGLFPANYVSL 523
           A ALY  +A  D E+SF    +  N+      GW  G  +G+ GL P NYV  
Sbjct: 13  AKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEF 65

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (169), Expect = 9e-16
 Identities = 15/49 (30%), Positives = 23/49 (46%)

Query: 473 VALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYV 521
           VA+  Y A   DE+S    + +  I  + +GWW        G FP+ Y+
Sbjct: 4   VAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYL 52

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (170), Expect = 1e-15
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEGWW-RGYCHGQYGLFPANYV 521
              VALYDY+A   +++SF   D +  +E   E W  R     + G  P+NYV
Sbjct: 5   IIVVALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYV 57

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.5 bits (172), Expect = 1e-15
 Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMID--EGWWRGYCHGQYGLFPANYV 521
              ALY ++A   DE+SF+  DII   E      GW  G   G +G FP NYV
Sbjct: 7   GYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYV 59

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (170), Expect = 1e-15
 Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMI-DEGWWRGYCH-GQYGLFPANYVSLQQ 525
           G   +A Y++  +A+ ++ F   D++T + +  D  W++     G+ G+ PANYV  ++
Sbjct: 6   GTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKRE 64

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.7 bits (168), Expect = 2e-15
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 470 YTAVALYDYQASADDEISFDPDDIITNIEMIDE--GWWRG-YCHGQYGLFPANYVSL 523
           +    LY + +  ++E++F+  + +  IE  +    WW+     GQ GL P NYV +
Sbjct: 7   HVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVV 63

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 59

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.2 bits (164), Expect = 5e-15
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL 523
           A + YD+ A    E+S   DD++  ++   + W      G  G  P N + +
Sbjct: 4   AKSKYDFVARNSSELSVMKDDVLEILDDRRQWWKVRNASGDSGFVPNNILDI 55

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.6 bits (165), Expect = 6e-15
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH-----GQYGLFPANYVSL 523
           G  A     Y AS  +++S  P  +I  ++    GWW+G         Q G FPA++V L
Sbjct: 7   GEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKL 66

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.1 bits (164), Expect = 7e-15
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC-HGQYGLFPANYV 521
             VA+YD+QA+   ++  +       +E  D  WWR    +G  G  P+NYV
Sbjct: 4   IVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYV 55

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 65.8 bits (160), Expect = 3e-14
 Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 15/74 (20%)

Query: 463 DTEEDLGYTAVALYDYQASADDEISFDPDDIITNI-----EMIDEGWWRGY--------- 508
           D      +   A +DY A+  DE+     D++  I     E  DEGW  G          
Sbjct: 6   DLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHK 65

Query: 509 -CHGQYGLFPANYV 521
                 G+FP N+ 
Sbjct: 66  ELEKCRGVFPENFT 79

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.9 bits (158), Expect = 4e-14
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 7/60 (11%)

Query: 471 TAVALYDYQA-SADDEISFDPDDIITNIEMID-----EGWWRG-YCHGQYGLFPANYVSL 523
            A ALYD+   + + E++    D++  +   D       WW+    +G  G  P NY+ +
Sbjct: 7   FARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEI 66

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.8 bits (157), Expect = 6e-14
 Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 6/59 (10%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY------CHGQYGLFPANYV 521
           G T   + DY A  ++EI     +++  + +  +     Y           G  P + +
Sbjct: 7   GSTMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSIL 65

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.6 bits (147), Expect = 1e-12
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 469 GYTAVALYDYQASAD-DEISFDPDDIITNIEMID-EGWWRGYC--HGQYGLFPANYV 521
           G     ++ + A  +   +SF   D++T +   + +GW  G        G FP++Y 
Sbjct: 7   GQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYT 63

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.9 bits (145), Expect = 2e-12
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC---HGQYGLFPANYVSL 523
              LY Y    DDEI+  P D I+ +       W        G+ GL P  Y+ +
Sbjct: 2   NKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIRI 56

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (141), Expect = 1e-11
 Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 17/72 (23%)

Query: 469 GYTAVALYDYQASADDEISFDPDDIIT---------------NIEMIDEGWWRGYC--HG 511
           GY   ALYDY+   +++I     DI+T                    + GW  GY    G
Sbjct: 3   GYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTG 62

Query: 512 QYGLFPANYVSL 523
           + G FP  YV  
Sbjct: 63  ERGDFPGTYVEY 74

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (140), Expect = 2e-11
 Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 8/73 (10%)

Query: 457 QQGTNEDTEEDLGYTAVALYDYQAS------ADDEISFDPDDIITNIEMIDEGWW--RGY 508
             GT++       +  VA Y Y          + E+       +     +DE  +     
Sbjct: 5   SSGTSKQRYSGKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGEL 64

Query: 509 CHGQYGLFPANYV 521
             GQ GL P+N+V
Sbjct: 65  LDGQRGLVPSNFV 77

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.4 bits (136), Expect = 5e-11
 Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 3/55 (5%)

Query: 470 YTAVALYDYQASADDEISFDPDDIITNIEMID-EGWWRGYC--HGQYGLFPANYV 521
                +     +    +  +P DI+   +      WW G      + G FP N V
Sbjct: 11  QEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRV 65

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 54.2 bits (130), Expect = 6e-10
 Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 10/62 (16%)

Query: 470 YTAVALYDYQASADDE-------ISFDPDDIITNIEMIDEGWWRGYC---HGQYGLFPAN 519
           +       Y A+ +D+       ISF+  D +   E  +  WW G       + G  P+ 
Sbjct: 22  FAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSP 81

Query: 520 YV 521
             
Sbjct: 82  VK 83

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (127), Expect = 2e-09
 Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 11/63 (17%)

Query: 470 YTAVALYDYQASADDEISFDPDDIITNIEMID---EGWWRGYCHG--------QYGLFPA 518
             AVAL DY A     ++     ++     +      +W G   G        + G FP+
Sbjct: 22  SMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPS 81

Query: 519 NYV 521
           + V
Sbjct: 82  SIV 84

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.8 bits (126), Expect = 2e-09
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 11/68 (16%)

Query: 469 GYTAVALYDYQASADD-----EISFDPDDIITNIEMIDEGWWRGY------CHGQYGLFP 517
           G+   AL+DY  + D       +SF   D++  I+  DE WW+             G  P
Sbjct: 1   GFYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIP 60

Query: 518 ANYVSLQQ 525
           +     ++
Sbjct: 61  SKRRVERR 68

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (120), Expect = 1e-08
 Identities = 10/68 (14%), Positives = 24/68 (35%), Gaps = 4/68 (5%)

Query: 458 QGTNEDTEEDLGYTAVALYDYQASADDEISFDPDDIITNIEMID----EGWWRGYCHGQY 513
            G +            A  ++ A+ D ++S    D++  I+  D    +  W        
Sbjct: 6   SGASLLARYPPEKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTK 65

Query: 514 GLFPANYV 521
           G   ++++
Sbjct: 66  GFVYSSFL 73

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.1 bits (106), Expect = 2e-06
 Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 10/58 (17%)

Query: 474 ALYDYQASADD-------EISFDPDDIITNIEMIDEGWWRGYC---HGQYGLFPANYV 521
               Y  + D+        +SFD  D +   E  +  WW G       + G  P+   
Sbjct: 28  TNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLR 85

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 1e-04
 Identities = 31/195 (15%), Positives = 72/195 (36%), Gaps = 5/195 (2%)

Query: 269 LRAKFENLAKQTEEESRKRSEEEKEKRKLKDQIDLEQAQKLEERRLSELKIKEEEIEKKL 328
           L  K ++  KQ +E S  R     +      + +++     +         K ++++KK 
Sbjct: 105 LEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKY 164

Query: 329 NGHSDVPLSPSTETPPVPVKSILKQPT---SDGIPIQNSNKEEEEKEKQRMVQEEIKRKE 385
                  +                      +D    +   + E E+ K    Q   K   
Sbjct: 165 YEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLH 224

Query: 386 LERKEELEKEQIRIKEEQENIKKKKEQEEKERKEQEENQKLLL--KKQQEEDRLKAEEQA 443
             +++  +  + + +  QE++K+  E+ E +R +  + Q+  L  K Q++E  LK   Q 
Sbjct: 225 EMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQK 284

Query: 444 RLLEQERLMEELRQQ 458
                +  +++L+ +
Sbjct: 285 ESRIMKNEIQDLQTK 299

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 3e-04
 Identities = 10/58 (17%), Positives = 16/58 (27%), Gaps = 10/58 (17%)

Query: 474 ALYDYQASADD-------EISFDPDDIITNIEMIDEGWWRGYC---HGQYGLFPANYV 521
               Y    D+        ++F+  D +   E     WW G      G     P+   
Sbjct: 28  TNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQR 85

>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All alpha proteins
fold: Non-globular all-alpha subunits of globular proteins
superfamily: Stathmin
family: Stathmin
domain: Stathmin 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.8 bits (85), Expect = 0.002
 Identities = 24/116 (20%), Positives = 48/116 (41%), Gaps = 2/116 (1%)

Query: 342 TPPVPVKSILKQPTSDGIPIQNSNKEEEEKEKQRMVQEEIKRKELERKEELEKEQIRIKE 401
           +     +     P      ++   K+ E  E++R  QE    K L  K E E+E I+   
Sbjct: 25  SFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAI 84

Query: 402 EQENIKKKKEQEEKERKEQEENQKLLLKKQQEEDRLKAEEQARLLEQERLMEELRQ 457
           E+ N   K  +E+  +K +   +    +        + +E+ +  E+ R  +EL++
Sbjct: 85  EENNNFIKMAKEKLAQKMESNKEN--REAHLAAMLERLQEKDKHAEEVRKNKELKE 138

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	525
d1utia_	57	Grb2-related adaptor protein 2 (Mona/Gads) {Mouse	99.43
d1u06a1	55	alpha-Spectrin, SH3 domain {Chicken (Gallus gallus	99.42
d1gcqa_	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.41
d1sema_	58	Growth factor receptor-bound protein 2 (GRB2), N-	99.41
d1k4us_	62	p67phox {Human (Homo sapiens) [TaxId: 9606]}	99.4
d1uj0a_	58	Signal transducing adaptor molecule Stam2 {Mouse (	99.39
d1udla_	98	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.36
d1wlpb1	53	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.36
d1ng2a2	118	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.34
d1oota_	58	Hypothetical protein YFR024c {Baker's yeast (Sacch	99.34
d1gria1	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.34
d1ng2a1	58	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.34
d1ujya_	76	Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606	99.33
d1jo8a_	58	Actin binding protein ABP1 {Baker's yeast (Sacchar	99.31
d1j3ta_	74	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.31
d1ckaa_	57	C-Crk, N-terminal SH3 domain {Mouse (Mus musculus)	99.3
d1ue9a_	80	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.3
d2v1ra1	67	Peroxisomal membrane protein Pex13p {Baker's yeast	99.29
d1arka_	60	SH3 domain from nebulin {Human (Homo sapiens) [Tax	99.29
d2rn8a1	53	Bruton's tyrosine kinase {Mus musculus [TaxId: 100	99.27
d1opka1	57	Abl tyrosine kinase, SH3 domain {Mouse (Mus muscul	99.27
d1ycsb2	63	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.26
d1gl5a_	67	tyrosine kinase tec {Mouse (Mus musculus) [TaxId:	99.25
d1uffa_	93	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.24
d1k9aa1	71	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.24
d1u5sa1	71	Nck-2 {Human (Homo sapiens) [TaxId: 9606]}	99.24
d1efna_	57	Fyn proto-oncogene tyrosine kinase, SH3 domain {Hu	99.23
d1i07a_	59	EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 1009	99.23
d1uhfa_	69	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.22
d1uhca_	79	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.22
d1ugva_	72	Olygophrenin-1 like protein (KIAA0621) {Human (Hom	99.22
d1awwa_	67	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	99.21
d1fmka1	64	c-src protein tyrosine kinase {Human (Homo sapiens	99.2
d1spka_	72	BAI1-associated protein 2-like 1 (RIKEN cDNA 13000	99.19
d1phta_	83	Phosphatidylinositol 3-kinase (p85-alpha subunit,	99.19
d1ug1a_	92	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.18
d1wfwa_	74	Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}	99.18
d1qcfa1	65	Hemapoetic cell kinase Hck {Human (Homo sapiens) [	99.17
d1bb9a_	83	Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 101	99.16
d2hspa_	71	Phospholipase C, SH3 domain {Human (Homo sapiens)	99.15
d1kjwa1	96	Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.13
d1zuua1	56	BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.12
d2iima1	62	p56-lck tyrosine kinase, SH3 domain {Human (Homo s	99.09
d1wiea_	96	RIM binding protein 2, RIMBP2 {Human (Homo sapiens	99.07
d1gcqc_	69	Vav N-terminal SH3 domain {Mouse (Mus musculus) [T	99.06
d1t0ha_	96	SH3-like domain of the L-type calcium channel {Rab	99.02
d1i1ja_	106	Melanoma inhibitory activity protein {Human (Homo	99.01
d1vyva1	145	SH3-like domain of the L-type calcium channel {Rat	98.86
d1vyua1	136	SH3-like domain of the L-type calcium channel {Rat	98.48
d1ri9a_	77	Fyn-binding protein (T-cell adapter protein adap)	93.56

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=8.8e-14  Score=106.74  Aligned_cols=55  Identities=38%  Similarity=0.808  Sum_probs=52.5

Q ss_pred             cEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       470 ~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ..|+|||+|.++.+++|+|.+||+|.|++..++|||.|+++|+.||||+|||++|
T Consensus         2 ~yarAlydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yve~i   56 (57)
T d1utia_           2 RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPM   56 (57)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEEECcCCCCCCcCCcCCCCCCEEEEeEEcCCCEEEEEECCcEEEEEHHHEEEc
Confidence            3689999999999999999999999999999999999999999999999999986

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.42  E-value=1.4e-13  Score=104.73  Aligned_cols=54  Identities=31%  Similarity=0.669  Sum_probs=51.6

Q ss_pred             EEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       471 ~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      .++|||+|.++.+++|+|.+||+|.|++..++|||.|+++|+.||||+|||+.|
T Consensus         2 ~~vAl~dy~~~~~~eLs~~~Gd~v~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~i   55 (55)
T d1u06a1           2 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL   55 (55)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECCCCCCCCcCCccCCCCCEEEEeEEcCCCEEEEEECCeEEEEeHHHEEEC
Confidence            478999999999999999999999999999999999999999999999999875

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.5e-13  Score=105.05  Aligned_cols=54  Identities=41%  Similarity=0.903  Sum_probs=51.8

Q ss_pred             EEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       471 ~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      .++|||+|.+..+++|+|.+||+|.|+...+++||.|+++|+.||||++||++|
T Consensus         3 yv~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~v   56 (56)
T d1gcqa_           3 YVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPV   56 (56)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECcCCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEECCeEEEEEHhHEEEC
Confidence            589999999999999999999999999998999999999999999999999875

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

Probab=99.41  E-value=1.7e-13  Score=105.42  Aligned_cols=55  Identities=35%  Similarity=0.709  Sum_probs=52.7

Q ss_pred             cEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       470 ~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ..|+|||+|.++.+++|+|.+||+|.|+...+.|||.|+++|+.||||++||+++
T Consensus         3 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yvep~   57 (58)
T d1sema_           3 KFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPY   57 (58)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEEECCCCCcCCcCCcCCCCCCEEEEeEEcCCCEEEEEECCeEEEEEhhhEEEC
Confidence            4789999999999999999999999999999999999999999999999999986

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.1e-13  Score=107.64  Aligned_cols=56  Identities=30%  Similarity=0.679  Sum_probs=53.3

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      +..++|||+|.+..+++|+|.+||+|.|+...+++||.|+++|+.||||+|||+.+
T Consensus         5 g~~v~Aly~y~a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~~g~~G~~P~~yVe~~   60 (62)
T d1k4us_           5 GSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDS   60 (62)
T ss_dssp             CEEEECCSCBCCCSSSBCCBCSSCEEEEEEESSSSCEEEECSSCEEEECGGGCCCS
T ss_pred             CCEEEECCCCCCCCcCCcCCCCCCEEEEeEEcCCCEEEEEECCcEEEEchHHeEEC
Confidence            56899999999999999999999999999999999999999999999999999864

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=2.4e-13  Score=104.57  Aligned_cols=55  Identities=38%  Similarity=0.809  Sum_probs=52.0

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeee
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSL  523 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~  523 (525)
                      ...|+|||+|.++.+++|+|.+||+|.|+...+++||.|+++|+.||||+|||+.
T Consensus         2 ~rr~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~~   56 (58)
T d1uj0a_           2 ARRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTT   56 (58)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEES
T ss_pred             CCEEEECCCCCCCCcCCcCCCCCCEEEEeEEeCCCEEEEEECCeEEEEehHhEee
Confidence            3579999999999999999999999999999999999999999999999999974

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.3e-13  Score=115.11  Aligned_cols=56  Identities=39%  Similarity=0.836  Sum_probs=53.4

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.++.+++|+|.+||+|.||...++|||.|+++|+.||||+|||++|
T Consensus        34 ~~~~~Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~gWw~g~~~g~~G~~P~nyVe~~   89 (98)
T d1udla_          34 VCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMT   89 (98)
T ss_dssp             SEEEEESSCCCCSSTTSCCCCTTCEEEECBCCSSSEEBCBSSSCBCCEETTSEEEC
T ss_pred             ccEEEEccCCCCCCCCEeeEcCCCEEEEeEecCCCeEEEEECCeEEEEchHHEEEC
Confidence            45799999999999999999999999999999999999999999999999999886

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=4.1e-13  Score=101.68  Aligned_cols=52  Identities=29%  Similarity=0.531  Sum_probs=49.6

Q ss_pred             EEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCee
Q psy194          471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVS  522 (525)
Q Consensus       471 ~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE  522 (525)
                      ..+|||+|.++.+++|+|.+||+|.|+...++|||.|+++|+.||||++||+
T Consensus         2 ~yval~~y~a~~~~eLs~~~Gd~v~vl~~~~~gWw~g~~~g~~G~~P~~yve   53 (53)
T d1wlpb1           2 PYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ   53 (53)
T ss_dssp             EEEECSCBCCCSSSBCCBCTTCEEEEEECCTTSSEEEESSSCEEEECSTTEE
T ss_pred             eEEEeeeECCCCCCEecCCCCCEEEEEeecCCceEEEEECCcEeEecHHhCC
Confidence            3589999999999999999999999999999999999999999999999986

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1e-12  Score=112.57  Aligned_cols=57  Identities=28%  Similarity=0.489  Sum_probs=53.8

Q ss_pred             CccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          468 LGYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       468 ~g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      .+..++|||+|.+..+++|+|.+||+|.||...+.|||.|+++|+.||||++||+.+
T Consensus        13 ~g~~~~alydy~a~~~dELs~~~Gd~i~Vl~~~~~gWw~g~~~g~~G~~P~~yv~~~   69 (118)
T d1ng2a2          13 AGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKS   69 (118)
T ss_dssp             TCEEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEET
T ss_pred             CCcEEEECcCCCCCCCCEecCCCCCEEEEeEecCCCeEEEEECCeEEEEehhhEEEC
Confidence            357889999999999999999999999999999999999999999999999999875

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.34  E-value=8.7e-13  Score=101.32  Aligned_cols=55  Identities=40%  Similarity=0.833  Sum_probs=50.8

Q ss_pred             cEEEEeccCCCCCCCCcccCCCCeEEEEEeec--CCeEEEEECCeeeeecCCCeeec
Q psy194          470 YTAVALYDYQASADDEISFDPDDIITNIEMID--EGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       470 ~~AvALYDYqAqsedELSFskGDIItVLek~D--eGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ..|+|||+|.++.+++|+|.+||+|.|+...+  .+||.|.++|+.||||+|||+.|
T Consensus         2 P~~~Alydy~a~~~~ELs~~~Gd~v~vl~~~~~~~~W~~~~~~g~~G~vP~~yve~i   58 (58)
T d1oota_           2 PKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV   58 (58)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSCTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CeEEEccCCCCCCCCCccCCCCCEEEEEEeecCCCCEEEEEECCcEEEEcHHHEEEC
Confidence            36999999999999999999999999998764  58999999999999999999976

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=3.9e-13  Score=102.66  Aligned_cols=54  Identities=37%  Similarity=0.797  Sum_probs=45.9

Q ss_pred             cEEEEeccCCCCCCCCcccCCCCeEEEEEee-cCCeEEEEECCeeeeecCCCeee
Q psy194          470 YTAVALYDYQASADDEISFDPDDIITNIEMI-DEGWWRGYCHGQYGLFPANYVSL  523 (525)
Q Consensus       470 ~~AvALYDYqAqsedELSFskGDIItVLek~-DeGWW~Gr~~Gr~G~FPSnYVE~  523 (525)
                      +.|+|||+|.+..+++|+|.+||+|+|+... +.+||.|.++|+.||||+|||+.
T Consensus         1 ~~a~Alydy~a~~~~ELs~~~Gd~v~v~~~~~~~~W~~~~~~g~~G~vP~nyvev   55 (56)
T d1gria1           1 MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEM   55 (56)
T ss_dssp             CEEEECSCBCCCSSSCCCBCTTCEEEC------CCEEEEESSSCEEEEEGGGEEC
T ss_pred             CEEEEeeCCCCCCCCCcCCCCCCEEEEEeccCCCCeEEEEECCcEEEEehhhEEE
Confidence            4699999999999999999999999988765 57899999999999999999974

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=3.1e-13  Score=103.61  Aligned_cols=55  Identities=24%  Similarity=0.549  Sum_probs=52.5

Q ss_pred             cEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       470 ~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ..++|||+|.+..+++|+|.+||+|.|+...+.+||.|+++|+.||||++||+++
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~~~~~g~~G~~P~~yve~l   57 (58)
T d1ng2a1           3 QTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPL   57 (58)
T ss_dssp             EEEECSSCBCCSSTTCCCBCTTCEEEEEECCTTSCCEEEECCCCCCCCGGGCCCS
T ss_pred             eEEEECccCcCCCCCCcCCCCCCEEEEEEecCCCeEEEEECCCCcEEcHhHEEEC
Confidence            4689999999999999999999999999999999999999999999999999886

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=5.4e-13  Score=107.38  Aligned_cols=57  Identities=32%  Similarity=0.659  Sum_probs=53.6

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeecC
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQQ  525 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~LQ  525 (525)
                      ...++|||+|.+..+++|+|.+||+|.|+...+.+||.|.++|+.||||++||+.+.
T Consensus        10 ~~~~rAlydy~a~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~i~   66 (76)
T d1ujya_          10 QLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIK   66 (76)
T ss_dssp             CEEEECCSCBCCSSTTSCCBCSSCCEEESSCCSSSCEEEEETTEEEEECTTTSEECC
T ss_pred             CEEEEECccCCCCCCCCccCCCCCEEEEeEEcCCCEEEEEECCcEEEEchHHEEECC
Confidence            457899999999999999999999999999989999999999999999999999873

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.31  E-value=9.3e-13  Score=100.82  Aligned_cols=54  Identities=52%  Similarity=0.948  Sum_probs=51.0

Q ss_pred             EEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEE--CCeeeeecCCCeeec
Q psy194          471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC--HGQYGLFPANYVSLQ  524 (525)
Q Consensus       471 ~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~--~Gr~G~FPSnYVE~L  524 (525)
                      +|+|||+|.+..+++|+|.+||+|.|+...+++||.|.+  +|+.||||+|||+++
T Consensus         2 ~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~~P~~yVe~i   57 (58)
T d1jo8a_           2 WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLG   57 (58)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             EEEEccCCCCCCcCCcCCCCCCEEEEEEEcCCCEEEEEECCCCCEEEEchHHEEEc
Confidence            589999999999999999999999999999999999995  689999999999986

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1e-12  Score=105.47  Aligned_cols=55  Identities=40%  Similarity=0.774  Sum_probs=51.7

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+..+++|+|.+||+|.|++. +++||.|+++|+.||||+|||+.+
T Consensus        10 ~~~~~alydy~a~~~~ELs~~~Gd~i~vl~~-~~~ww~g~~~g~~G~fP~~yve~i   64 (74)
T d1j3ta_          10 NLKAQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKII   64 (74)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEE-CSSEEEEESTTCCCEEEGGGEEEC
T ss_pred             CeEEEEccCCCCCCCCEecCCCCCEEEEEEc-cCCeEEEEECCcEEEEchhhEEEC
Confidence            5789999999999999999999999999987 568999999999999999999986

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=1.1e-12  Score=100.48  Aligned_cols=53  Identities=26%  Similarity=0.676  Sum_probs=50.2

Q ss_pred             EEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEE-ECCeeeeecCCCeee
Q psy194          471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYVSL  523 (525)
Q Consensus       471 ~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr-~~Gr~G~FPSnYVE~  523 (525)
                      .++|||||.++.+++|+|.+||+|.|+...+.+||.|+ ++|+.||||+|||++
T Consensus         3 ~v~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~vP~~yve~   56 (57)
T d1ckaa_           3 YVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK   56 (57)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEC
T ss_pred             EEEECCCCCcCCcCCcCCCCCCEEEEEEEcCCCeEEEEECCCCEEEEcHHHeEE
Confidence            58999999999999999999999999999999999999 678999999999985

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=2.1e-12  Score=103.97  Aligned_cols=56  Identities=34%  Similarity=0.609  Sum_probs=51.6

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEEC-----CeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCH-----GQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~-----Gr~G~FPSnYVE~L  524 (525)
                      +..++|||+|.+..+++|+|.+||+|.|+.+.+++||.|.+.     ++.||||++||+++
T Consensus         7 g~~~~al~~y~~~~~~eLs~~~Gd~i~Vl~~~~~~Ww~g~~~~~~~~~~~G~~P~~yv~~~   67 (80)
T d1ue9a_           7 GEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLL   67 (80)
T ss_dssp             CEEEEECSCCCCCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEEC
T ss_pred             CCEEEECcCCCCCCCCEeeEcCCCEEEEEEEeCCCeEEEEEccCCCCCCEeEEEheeEEEC
Confidence            568999999999999999999999999999999999999864     45899999999876

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.29  E-value=1.3e-12  Score=103.01  Aligned_cols=56  Identities=27%  Similarity=0.582  Sum_probs=49.6

Q ss_pred             ccEEEEeccCCCCCCC-CcccCCCCeEEEEEeec-----CCeEEEE-ECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADD-EISFDPDDIITNIEMID-----EGWWRGY-CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsed-ELSFskGDIItVLek~D-----eGWW~Gr-~~Gr~G~FPSnYVE~L  524 (525)
                      ...|+|||+|.+...+ +|+|.+|++|.|+...+     .|||.|+ .+|+.||||+|||+.|
T Consensus         5 ~~~~~Alydy~~~~~~~ELs~~~Gd~i~vl~~~d~~~~~~~Ww~g~~~~G~~G~~P~nyve~i   67 (67)
T d2v1ra1           5 LEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII   67 (67)
T ss_dssp             CEEEEESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECTTSCEEEEEGGGEEEC
T ss_pred             CEEEEECccCCCCCCCCEeCCCCCCEEEEEEeecCCCcCCCeEEEEeCCCCEEEEEHHHEEEC
Confidence            4579999999998764 99999999999998764     4899999 5899999999999976

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=9e-13  Score=101.53  Aligned_cols=56  Identities=46%  Similarity=0.816  Sum_probs=52.1

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEE--CCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC--HGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~--~Gr~G~FPSnYVE~L  524 (525)
                      +..++|||+|.++.+++|+|.+||+|.|+...+++||.+.+  +|+.||||+|||+.|
T Consensus         3 G~~~rAl~df~~~~~~eLs~~~Gd~i~v~~~~~~~W~~~~~~~~g~~G~vP~nyve~i   60 (60)
T d1arka_           3 GKIFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEAI   60 (60)
T ss_dssp             CCCEECCSCCCCSSSSBCCCCTTCEECCSEECSSSEEEEECTTTCCEEEEETTTCEEC
T ss_pred             CcEEEECccCCCCCCCCcCCCCCCEEEEEEEcCCCEEEEEECCCCCEEEEcHHHEEEC
Confidence            56789999999999999999999999999999999999995  689999999999975

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

Probab=99.27  E-value=1.4e-12  Score=98.49  Aligned_cols=52  Identities=29%  Similarity=0.586  Sum_probs=48.7

Q ss_pred             EEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEE-ECCeeeeecCCCeee
Q psy194          472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYVSL  523 (525)
Q Consensus       472 AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr-~~Gr~G~FPSnYVE~  523 (525)
                      ++|||+|.+..+++|+|.+||+|.|+...+.+||.++ .+|+.||||+|||+.
T Consensus         1 V~Alydy~a~~~~eLs~~~Gd~~~vl~~~~~~Ww~~~~~~g~~G~vP~~yv~e   53 (53)
T d2rn8a1           1 VIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVE   53 (53)
T ss_dssp             EEESSCCCCSSTTBCCCCTTCEEEECCCSCSSCEEEECTTSCEEEECGGGEEE
T ss_pred             CEEeeeECCCCCCeeeECCCCEEEEeEEcCCCeEEEEeCCCCEEEEeHHHEeC
Confidence            5799999999999999999999999998899999998 688999999999974

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.27  E-value=3.2e-12  Score=97.82  Aligned_cols=54  Identities=26%  Similarity=0.479  Sum_probs=49.3

Q ss_pred             EEEEeccCCCCCCCCcccCCCCeEEEEEeecC-CeEEEEECCeeeeecCCCeeec
Q psy194          471 TAVALYDYQASADDEISFDPDDIITNIEMIDE-GWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       471 ~AvALYDYqAqsedELSFskGDIItVLek~De-GWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      .++|||+|.++.+++|+|.+||+|.|+...+. +||.++++|+.||||++||+++
T Consensus         2 ~~vAlydy~a~~~~eLs~~~Gd~i~vl~~~~~~~W~~~~~~g~~G~~P~~yv~~v   56 (57)
T d1opka1           2 LFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPV   56 (57)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEECTTSSEEEEECSSCEEEEEGGGEEES
T ss_pred             EEEECccCCCCCcCCcCCCCCCEEEEeEecCCCCEEEEEECCCEeEEchhheEEC
Confidence            47899999999999999999999999988765 5778999999999999999986

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2.8e-12  Score=100.07  Aligned_cols=55  Identities=31%  Similarity=0.546  Sum_probs=50.1

Q ss_pred             cEEEEeccCCCCCCCCcccCCCCeEEEEEeec---CCeEEEEECCeeeeecCCCeeec
Q psy194          470 YTAVALYDYQASADDEISFDPDDIITNIEMID---EGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       470 ~~AvALYDYqAqsedELSFskGDIItVLek~D---eGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      -.++|||+|.++.+++|+|.+||+|.|+...+   .|||.|+++|+.||||+|||+++
T Consensus         5 g~v~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~gW~~g~~~g~~G~~P~~yv~~~   62 (63)
T d1ycsb2           5 GVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLY   62 (63)
T ss_dssp             GEEEESSCBCCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEETTEEEEEEGGGEECC
T ss_pred             CEEEEeeCCCCCCCCCcCCCCCCEEEEEEecCCCCCCEEEEEECCeEEEEchHHhEeC
Confidence            36889999999999999999999999998764   37999999999999999999875

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=3.2e-12  Score=100.48  Aligned_cols=54  Identities=31%  Similarity=0.613  Sum_probs=50.8

Q ss_pred             EEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEE-ECCeeeeecCCCeeec
Q psy194          471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       471 ~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr-~~Gr~G~FPSnYVE~L  524 (525)
                      .++|||+|.+..+++|+|.+||+|.|+...+.+||.+. .+|+.||||+|||+.+
T Consensus         4 ~v~Alydf~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yV~~~   58 (67)
T d1gl5a_           4 IVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGK   58 (67)
T ss_dssp             CEEECSCBCCSSSSBCCBCTTCEEEEEECSSSSEEEEECSSSCEEEEETTSEESS
T ss_pred             EEEECCCCCCCCcCCcCCCCCCEEEEEEecCCCcEEEEECCCCEEEEEhHHeEEe
Confidence            58999999999999999999999999999999999998 6789999999999876

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=4.5e-12  Score=104.14  Aligned_cols=55  Identities=40%  Similarity=0.712  Sum_probs=50.8

Q ss_pred             cEEEEeccCCCCCCCCcccCCCCeEEEEEee--cCCeEEEEECCeeeeecCCCeeec
Q psy194          470 YTAVALYDYQASADDEISFDPDDIITNIEMI--DEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       470 ~~AvALYDYqAqsedELSFskGDIItVLek~--DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ..++|||+|.+..++||+|.+||+|.|+...  +.+||.+.++|+.||||+|||+++
T Consensus         6 ~~~rAlydy~~~~~~ELs~~~Gd~v~Vl~~~~~~~~w~~~~~~g~~G~~P~~Yve~~   62 (93)
T d1uffa_           6 SGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKM   62 (93)
T ss_dssp             CCEEESSCBCCCSSSCCCBCTTCEEEECSSCCCSSSEEEEEETTEEEEEETTTEEEC
T ss_pred             eEEEECccCCCCCCCCccCcCCCEEEEEEeccCCCCEEEEEeCCcEEEEchHHEEEC
Confidence            4689999999999999999999999999765  468999999999999999999876

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=5.3e-12  Score=100.15  Aligned_cols=57  Identities=28%  Similarity=0.672  Sum_probs=51.0

Q ss_pred             CccEEEEeccCCCCCCCCcccCCCCeEEEEEee-cCCeEEEEE-CCeeeeecCCCeeec
Q psy194          468 LGYTAVALYDYQASADDEISFDPDDIITNIEMI-DEGWWRGYC-HGQYGLFPANYVSLQ  524 (525)
Q Consensus       468 ~g~~AvALYDYqAqsedELSFskGDIItVLek~-DeGWW~Gr~-~Gr~G~FPSnYVE~L  524 (525)
                      .+..|+|||+|.+..+++|+|.+||+|.|+... +.+||.++. .|+.||||+|||+.+
T Consensus         5 ~g~~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~W~~~~~~~g~~G~~P~~yve~~   63 (71)
T d1k9aa1           5 SGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKR   63 (71)
T ss_dssp             TTCEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSTTEEEEECTTCCEEEEEGGGEEEC
T ss_pred             CCCEEEEccCCCCCCCCCccCCCCCEEEEeEeccCCCEEEEEeCCCCEEEEchHHeEEc
Confidence            367899999999999999999999999999875 557899985 589999999999976

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=7e-12  Score=99.55  Aligned_cols=56  Identities=29%  Similarity=0.639  Sum_probs=50.9

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeec--CCeEEEE-ECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMID--EGWWRGY-CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~D--eGWW~Gr-~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.++.+++|+|.+||+|.|+...+  .+||.++ ++|+.||||+|||+.+
T Consensus         6 l~~~~Alydf~~~~~~eLs~~~Gd~i~vl~~~~~~~~Ww~~~~~~G~~G~vP~~yv~~~   64 (71)
T d1u5sa1           6 LHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVL   64 (71)
T ss_dssp             SSEEEESSCCCCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEETTTEEEEEETTSEEEC
T ss_pred             cEEEEECccCCCCCCCEeeECCCCEEEEEEcccCCCCeEEEEECCCCEEEEChHHEEEC
Confidence            467999999999999999999999999998753  4899998 6899999999999986

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=5.6e-12  Score=95.70  Aligned_cols=53  Identities=34%  Similarity=0.732  Sum_probs=49.4

Q ss_pred             EEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEE--CCeeeeecCCCeeec
Q psy194          472 AVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC--HGQYGLFPANYVSLQ  524 (525)
Q Consensus       472 AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~--~Gr~G~FPSnYVE~L  524 (525)
                      ++|||+|.+..+++|+|.+||+|.|+...+++||.+.+  +|+.||||+|||+++
T Consensus         3 ~vAl~dy~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~vP~~yv~pv   57 (57)
T d1efna_           3 FVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV   57 (57)
T ss_dssp             EEESSCBCCSSTTBCCBCTTCEEEEEECSSCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             EEECCCCCCCCcCCcCCCCCCEEEEEEecCCCCEEEEECCCCCEEEEeHHHeEEC
Confidence            67999999999999999999999999998899999984  789999999999875

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=3.2e-12  Score=98.36  Aligned_cols=54  Identities=26%  Similarity=0.559  Sum_probs=49.3

Q ss_pred             EEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEE-ECCeeeeecCCCeeecC
Q psy194          471 TAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYVSLQQ  525 (525)
Q Consensus       471 ~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr-~~Gr~G~FPSnYVE~LQ  525 (525)
                      .++|+|+|.++.+++|+|.+||+|.|+... ++||.+. ++|+.||||+|||+.++
T Consensus         3 ~a~alydf~a~~~~ELs~~~Gd~i~v~~~~-~~ww~~~~~~g~~G~~P~nyve~i~   57 (59)
T d1i07a_           3 YAKSKYDFVARNSSELSVMKDDVLEILDDR-RQWWKVRNASGDSGFVPNNILDIMR   57 (59)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEECGGG-CCEEEEECTTSCEEEEEGGGEEEEC
T ss_pred             EEEEccCCCCCCCCeeeEcCCCEEEEEEEc-CCcEEEEEcCCCEEEECHHHeEECC
Confidence            689999999999999999999999999864 5899988 78999999999999874

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=3.3e-12  Score=101.47  Aligned_cols=55  Identities=31%  Similarity=0.680  Sum_probs=51.1

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      +..++|||+|.+..+++|+|.+||+|+|+.. +++||.++++|+.||||++||+++
T Consensus         8 ~~~~vAl~~y~~~~~~eLs~~~Gd~v~vl~~-~~~Ww~~~~~g~~G~vP~~yv~~~   62 (69)
T d1uhfa_           8 GEEYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYVKPK   62 (69)
T ss_dssp             SEEEECSSCBCCSSSSBCCBCTTCEEEECEE-ETTEEEECSTTCCEEECGGGCEEC
T ss_pred             CcEEEECccCCCCCcCCcCCCCCCEEEEEEe-cCCEEEEEECCcEEEEchhhEEEC
Confidence            5688999999999999999999999999976 568999999999999999999876

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=6.6e-12  Score=101.70  Aligned_cols=57  Identities=23%  Similarity=0.568  Sum_probs=51.7

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEee----cCCeEEEEECCeeeeecCCCeeecC
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMI----DEGWWRGYCHGQYGLFPANYVSLQQ  525 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~----DeGWW~Gr~~Gr~G~FPSnYVE~LQ  525 (525)
                      ...++|||+|.+..+++|+|.+||+|.||+..    ..+||.|+++|+.||||++||+++.
T Consensus        13 ~~~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~~~W~~g~~~g~~G~vP~~yv~~~~   73 (79)
T d1uhca_          13 NQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTE   73 (79)
T ss_dssp             SCCEEESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEESSSCEEEEEGGGEEECC
T ss_pred             CEEEEECccCCCCCCCCccCCCCCEEEEEEeecCCCCCCEEEEEECCCEEEEehhhEEECC
Confidence            35689999999999999999999999999865    3689999999999999999999873

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2.7e-12  Score=102.36  Aligned_cols=56  Identities=36%  Similarity=0.627  Sum_probs=51.4

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeec-CCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMID-EGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~D-eGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...|+|||+|.+..+++|+|.+||+|+|+...+ ++||.|.++|+.||||+|||+.|
T Consensus        10 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~g~~G~~P~~yve~i   66 (72)
T d1ugva_          10 FRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFL   66 (72)
T ss_dssp             CCCEEESSCBCCCSSSBCCBCTTCEEBSCCBCSSTTEEEEESSSCEEEEEGGGEEEC
T ss_pred             CEEEEEcccCCCCCCCEecCCCCCEEEEeeccCCCCEEEEEeCCCEEEEchHHEEEC
Confidence            457999999999999999999999999998764 57999999999999999999987

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.1e-12  Score=101.63  Aligned_cols=57  Identities=32%  Similarity=0.557  Sum_probs=52.7

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEE-ECCeeeeecCCCeeecC
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYVSLQQ  525 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr-~~Gr~G~FPSnYVE~LQ  525 (525)
                      ...++|||+|.+..+++|+|.+||+|.|+...+.+||.+. .+|+.||||+|||+.++
T Consensus         8 ~~~v~Alydy~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~vP~~yv~~~~   65 (67)
T d1awwa_           8 LKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAE   65 (67)
T ss_dssp             CCEEEBSSCCCCSSSSSCCCCSSCEEECCCCCSSSEECCBCTTSCBCCEETTTBCCSC
T ss_pred             CEEEEECcCCCCCCcCCcCCCCCCEEEEEEEcCCCeEEEEECCCCEEEEcHHHeEECc
Confidence            4689999999999999999999999999998889999998 57899999999998763

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=6.6e-12  Score=97.63  Aligned_cols=55  Identities=33%  Similarity=0.694  Sum_probs=50.8

Q ss_pred             cEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEE--CCeeeeecCCCeeec
Q psy194          470 YTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC--HGQYGLFPANYVSLQ  524 (525)
Q Consensus       470 ~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~--~Gr~G~FPSnYVE~L  524 (525)
                      .+++|||+|.+..+++|+|.+||+|.|+...+++||.+..  +|+.||||+|||+.+
T Consensus         3 ~~~vAlydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~vP~~yv~~~   59 (64)
T d1fmka1           3 TTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPS   59 (64)
T ss_dssp             EEEEESSCBCCCSSSBCCBCTTCEEEESCCCSSSEEEEEETTTCCEEEEEGGGEEET
T ss_pred             eEEEECccCCCcCcCCcCCCCCCEEEEEEEcCCCcEEEEECCCCCEEEEehHHeEEC
Confidence            4679999999999999999999999999988889999984  689999999999876

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=7.3e-12  Score=99.81  Aligned_cols=56  Identities=25%  Similarity=0.474  Sum_probs=48.6

Q ss_pred             ccEEEEeccCCCC-CCCCcccCCCCeEEEEEe-ecCCeEEEEE--CCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQAS-ADDEISFDPDDIITNIEM-IDEGWWRGYC--HGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAq-sedELSFskGDIItVLek-~DeGWW~Gr~--~Gr~G~FPSnYVE~L  524 (525)
                      +..|+|||+|.+. .+++|+|.+||+|.|+.. ..++||.|.+  +|+.||||+|||+.|
T Consensus         7 ~~~~~Alydy~~~~~~deLsf~~Gd~i~vl~~~~~~gW~~g~~~~~g~~G~fP~nyVe~i   66 (72)
T d1spka_           7 GQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLL   66 (72)
T ss_dssp             SCEEECSSCBCCSSCSSBCCBCTTCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEEC
T ss_pred             CCEEEEeeccCCCCCCCEeeEcCCCEEEEEEeecCCCeEEEEECCCCCEEEEchhhEEEC
Confidence            5689999999985 578899999999999865 4568999996  489999999999987

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=5.1e-12  Score=103.88  Aligned_cols=56  Identities=38%  Similarity=0.727  Sum_probs=50.5

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEee---------------cCCeEEEEE--CCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMI---------------DEGWWRGYC--HGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~---------------DeGWW~Gr~--~Gr~G~FPSnYVE~L  524 (525)
                      |..++|||+|.+..+++|+|.+||+|.|+...               ++|||.|++  +|+.||||+|||+.|
T Consensus         3 G~~~raly~y~~~~~~eLs~~~Gd~i~V~~~~~~~~~~~~~~~~~~~~~GW~~G~~~~~g~~G~FP~nYVe~i   75 (83)
T d1phta_           3 GYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYI   75 (83)
T ss_dssp             EEEEEECSCBCCSSTTBCCBCTTCEEEEEHHHHHTTTCCTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEE
T ss_pred             CCEEEEcCccCCCCCCcccccCCCEEEEEeccccccccccccccccCCCCeEEEEECCCCcEeeEehhhEEEc
Confidence            57899999999999999999999999999642               468999985  799999999999876

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.2e-11  Score=102.90  Aligned_cols=56  Identities=16%  Similarity=0.170  Sum_probs=51.5

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeec----CCeEEEEECCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMID----EGWWRGYCHGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~D----eGWW~Gr~~Gr~G~FPSnYVE~L  524 (525)
                      ...++|||+|.++.+++|+|.+||+|.||+..+    .+||.++++|+.||||+|||+++
T Consensus        17 ~~~~~a~~~f~a~~~~eLs~~~Gd~v~vl~~~d~~~~~~Ww~~~~~g~~G~~P~~yv~~~   76 (92)
T d1ug1a_          17 EKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPY   76 (92)
T ss_dssp             GGEEEESSCCCCCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEECSSSEEEEEGGGEEEC
T ss_pred             CeEEEEcCCcCCCCCCeEEEecccEEEEEEcccccccCCceEEEecccEEEEEhhhceec
Confidence            356899999999999999999999999999764    68999999999999999999875

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=1.4e-11  Score=98.26  Aligned_cols=56  Identities=18%  Similarity=0.294  Sum_probs=51.8

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEE------CCeeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC------HGQYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~------~Gr~G~FPSnYVE~L  524 (525)
                      +..++|||+|.+..+++|+|.+||+|.|++..+.+||.++.      +|+.||||+|||+++
T Consensus         7 g~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~v~~~~~~~~~g~~G~vP~~yve~~   68 (74)
T d1wfwa_           7 GSTMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILAPF   68 (74)
T ss_dssp             SCEEECCSCBCCCSSSCCCBCTTCEEEEEEECTTSEEEEEECSCSSSSSEEEEEEGGGCCBC
T ss_pred             CCEEEEeEEECCCCCCCccCccCCEEEEEEEcCCCCEEEEeCccCCcCCeeeEEchHHeEEC
Confidence            56899999999999999999999999999999999999984      478999999999886

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=2e-11  Score=95.00  Aligned_cols=56  Identities=32%  Similarity=0.661  Sum_probs=49.2

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEE--CCeeeeecCCCeeecC
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYC--HGQYGLFPANYVSLQQ  525 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~--~Gr~G~FPSnYVE~LQ  525 (525)
                      ...++|||+|.++.+++|+|.+||+|.|++. +++||.+.+  +|+.||||+|||+.++
T Consensus         4 ~~~vvAlydy~~~~~~eLs~~~Gd~i~v~~~-~~~ww~~~~~~~g~~G~vP~~yv~~~~   61 (65)
T d1qcfa1           4 RIIVVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVD   61 (65)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEC-CTTEEEEEETTTCCEEEEEGGGEEETT
T ss_pred             cEEEEECCcCCCCCcCccCCCCCCEEEEEEE-CCCCEEEEEccCCCEEEEchHHeEECc
Confidence            4578999999999999999999999999985 457888873  7899999999999863

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.16  E-value=1.1e-11  Score=101.04  Aligned_cols=57  Identities=32%  Similarity=0.559  Sum_probs=50.3

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEee-----cCCeEEEEE----------CCeeeeecCCCeeecC
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMI-----DEGWWRGYC----------HGQYGLFPANYVSLQQ  525 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~-----DeGWW~Gr~----------~Gr~G~FPSnYVE~LQ  525 (525)
                      ...++|||+|.+..+++|+|.+||+|.|+...     ++|||.|..          +|+.||||+|||+.|+
T Consensus        12 ~~~~~Alydy~a~~~~ELs~~~Gd~i~Vl~~~~~~~~~dgWw~G~~~~~~~~~~~~~g~~G~fP~nyVe~ie   83 (83)
T d1bb9a_          12 MFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERVQ   83 (83)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEEC
T ss_pred             CEEEEEceeECCCCCCEecCcCCCEEEEEEccCCCcccCCEeEEEecCCccccccCCCCEEEEchhHeEEcC
Confidence            45899999999999999999999999999764     368999974          3678999999999885

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=3.6e-12  Score=101.35  Aligned_cols=56  Identities=41%  Similarity=0.774  Sum_probs=50.3

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEEECC-eeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGYCHG-QYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr~~G-r~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+..+++|+|.+||+|.|++..+++||.|++++ ..||||+|||+.+
T Consensus         6 ~~~v~Aly~f~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~~~G~fP~~yv~~~   62 (71)
T d2hspa_           6 KCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEM   62 (71)
T ss_dssp             SSCEECCSCCCCSSSSSCCCCTTCEEBSCCCBTTTEECCBCSSCCSCCEETTTCCSC
T ss_pred             cEEEEEcccCCcCCcCCccCCCCCEEEEEEecCCCEEEEEECCeEEEEEchHHeEEc
Confidence            4578999999999999999999999999999999999999654 4459999999876

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.13  E-value=3.3e-12  Score=105.95  Aligned_cols=55  Identities=29%  Similarity=0.614  Sum_probs=48.5

Q ss_pred             ccEEEEeccCCCCCC-----CCcccCCCCeEEEEEeecCCeEEEEE------CCeeeeecCCCeee
Q psy194          469 GYTAVALYDYQASAD-----DEISFDPDDIITNIEMIDEGWWRGYC------HGQYGLFPANYVSL  523 (525)
Q Consensus       469 g~~AvALYDYqAqse-----dELSFskGDIItVLek~DeGWW~Gr~------~Gr~G~FPSnYVE~  523 (525)
                      +++++|||||.++.+     .+|+|.+||+|.|+...+.+||.|+.      +|+.||||+|||+.
T Consensus         1 ~~~vrAlydy~~~~d~~~~~~eLsf~kGdil~V~~~~d~~WW~~~~~~~~~~~g~~G~~Psnyv~e   66 (96)
T d1kjwa1           1 GFYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVE   66 (96)
T ss_dssp             CEEEEESSCBCHHHHHCCCSSBCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHH
T ss_pred             CEEEEEcccCcCCcCCCCCCccceEcCCCEEEEeeeccCceEEEEEccCCCCCCCEeEEeccceee
Confidence            467899999998763     48999999999999999999999984      67899999999864

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.12  E-value=2.1e-11  Score=92.33  Aligned_cols=52  Identities=33%  Similarity=0.624  Sum_probs=45.3

Q ss_pred             EEEeccCCCCCCCCcccCCCCeEEEEEeecC-CeEEEE--ECCeeeeecCCCeee
Q psy194          472 AVALYDYQASADDEISFDPDDIITNIEMIDE-GWWRGY--CHGQYGLFPANYVSL  523 (525)
Q Consensus       472 AvALYDYqAqsedELSFskGDIItVLek~De-GWW~Gr--~~Gr~G~FPSnYVE~  523 (525)
                      ++|||+|.++.+++|+|.+||+|.|+...+. +||.+.  ++|+.||||+|||++
T Consensus         2 aralydf~a~~~~ELs~~~Gd~i~v~~~~~~~~w~~~~~~~~g~~G~~P~nyvev   56 (56)
T d1zuua1           2 NKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIRI   56 (56)
T ss_dssp             CEECSCBCCCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEEC
T ss_pred             CEEeeeeCCCCCCEeeECCCCEEEEEEEecCCCcEEEeCCCCceEEEEehhhEEC
Confidence            6899999999999999999999999988764 566555  579999999999974

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=5.3e-11  Score=91.77  Aligned_cols=54  Identities=28%  Similarity=0.629  Sum_probs=47.5

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEeecCCeEEEE--ECCeeeeecCCCeee
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMIDEGWWRGY--CHGQYGLFPANYVSL  523 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~DeGWW~Gr--~~Gr~G~FPSnYVE~  523 (525)
                      ...++|||+|.++.+++|+|.+||+|.|+...+ +||.+.  ++|+.||||+|||+.
T Consensus         6 ~~~~~al~dy~a~~~~eLs~~~Gd~i~v~~~~~-~ww~~~~~~~g~~G~~P~~yV~~   61 (62)
T d2iima1           6 DNLVIALHSYEPSHDGDLGFEKGEQLRILEQSG-EWWKAQSLTTGQEGFIPFNFVAK   61 (62)
T ss_dssp             TCEEEESSCBCCCSTTBCCBCTTCEEEEEECCS-SEEEEEETTTCCEEEEEGGGEEE
T ss_pred             CcEEEECCCCCcCCcCCcCCCCCCEEEEeEEcC-CCEEEEeccCCeEeEEcHHHEEe
Confidence            357999999999999999999999999998765 577666  579999999999975

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=3e-11  Score=101.51  Aligned_cols=57  Identities=26%  Similarity=0.483  Sum_probs=48.7

Q ss_pred             CccEEEEeccCCCCC------CCCcccCCCCeEEEEEeec-CCeEEEE-ECCeeeeecCCCeeec
Q psy194          468 LGYTAVALYDYQASA------DDEISFDPDDIITNIEMID-EGWWRGY-CHGQYGLFPANYVSLQ  524 (525)
Q Consensus       468 ~g~~AvALYDYqAqs------edELSFskGDIItVLek~D-eGWW~Gr-~~Gr~G~FPSnYVE~L  524 (525)
                      ....|+|||||.+..      +++|+|.+||+|.|+...+ ++||.+. ++|+.||||+|||+.+
T Consensus        16 ~~~~~~Alydy~~~~~~~~~~e~ELsf~~Gd~i~v~~~~~~~gW~~~~~~~G~~G~~P~nyve~~   80 (96)
T d1wiea_          16 KVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFV   80 (96)
T ss_dssp             CEEEEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEETTCCBCBCCTTSEECC
T ss_pred             CceEEEEeeeecCcccCCCCCCcEeeEcCCCEEEEEEeeCCCceEEEEeCCCCEEEEehHHeEEC
Confidence            356899999998753      5889999999999997654 5788887 6899999999999987

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=1.1e-10  Score=92.72  Aligned_cols=55  Identities=22%  Similarity=0.479  Sum_probs=47.1

Q ss_pred             cEEEEeccCCC------CCCCCcccCCCCeEEEEEe-ecCCeEEEEE--CCeeeeecCCCeeec
Q psy194          470 YTAVALYDYQA------SADDEISFDPDDIITNIEM-IDEGWWRGYC--HGQYGLFPANYVSLQ  524 (525)
Q Consensus       470 ~~AvALYDYqA------qsedELSFskGDIItVLek-~DeGWW~Gr~--~Gr~G~FPSnYVE~L  524 (525)
                      ..+.|+++|.+      ...++|+|.+||+|.|++. .++|||.|++  +|+.||||+|||++.
T Consensus         5 Pk~~a~~~y~~~~~~~~~~~~eLsf~~GD~i~Vl~~~~~~gWw~G~~~~~g~~G~fP~nyVePy   68 (69)
T d1gcqc_           5 PKMEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY   68 (69)
T ss_dssp             CEEEECSCBSSSSCCGGGCSCBCCBCTTCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             CcEEEeeeEeccCCCCCCCCCEeeEcCCCEEEEEEEecCCCEEEEEECCCCCEEEEeHHHEEEc
Confidence            46788888765      6778999999999999975 4679999995  799999999999874

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.02  E-value=7.7e-11  Score=99.51  Aligned_cols=53  Identities=25%  Similarity=0.569  Sum_probs=48.7

Q ss_pred             ccEEEEeccCCCCCCCC-------cccCCCCeEEEEEeecCCeEEEEE---CCeeeeecCCCe
Q psy194          469 GYTAVALYDYQASADDE-------ISFDPDDIITNIEMIDEGWWRGYC---HGQYGLFPANYV  521 (525)
Q Consensus       469 g~~AvALYDYqAqsedE-------LSFskGDIItVLek~DeGWW~Gr~---~Gr~G~FPSnYV  521 (525)
                      ...++|||||.+..+++       |+|.+||+|.|+...+++||.|++   +|+.||||++|+
T Consensus        21 ~~~vrAlydY~~~~dd~~P~~~~~LsF~~GDii~v~~~~d~~WW~gr~~~~~g~~G~~PS~~~   83 (96)
T d1t0ha_          21 AFAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVK   83 (96)
T ss_dssp             CEEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHH
T ss_pred             cEEEEEeeccCCCCCCCCccccccccCCCCCEEEEeeeeCCCceEEEEcCCCCCEEEecCcHH
Confidence            46899999999999888       999999999999999999999997   689999999864

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.9e-10  Score=98.11  Aligned_cols=56  Identities=25%  Similarity=0.425  Sum_probs=49.1

Q ss_pred             ccEEEEeccCCCCCCCCcccCCCCeEEEEEee---cCCeEEEEECC--------eeeeecCCCeeec
Q psy194          469 GYTAVALYDYQASADDEISFDPDDIITNIEMI---DEGWWRGYCHG--------QYGLFPANYVSLQ  524 (525)
Q Consensus       469 g~~AvALYDYqAqsedELSFskGDIItVLek~---DeGWW~Gr~~G--------r~G~FPSnYVE~L  524 (525)
                      ...++|||+|.+...++|+|.+||+|.|+.+.   +.+||.|.+.|        +.||||+|||+.+
T Consensus        21 ~~~~~Alydy~~~~~~eL~f~~Gd~i~Vl~k~~~~~~~WW~g~~~g~~~~~~~g~~G~fP~nyV~~~   87 (106)
T d1i1ja_          21 ISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVRED   87 (106)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEE
T ss_pred             eeEEEEccccCCCCCCCccCCCCCEEEEEEecCCCCcceEEEEecCccccccCCcccccccccEEEc
Confidence            45799999999999999999999999999873   47899998644        6899999999875

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.86  E-value=8e-10  Score=98.20  Aligned_cols=52  Identities=23%  Similarity=0.546  Sum_probs=48.0

Q ss_pred             cEEEEeccCCCCCCCC-------cccCCCCeEEEEEeecCCeEEEEE---CCeeeeecCCCe
Q psy194          470 YTAVALYDYQASADDE-------ISFDPDDIITNIEMIDEGWWRGYC---HGQYGLFPANYV  521 (525)
Q Consensus       470 ~~AvALYDYqAqsedE-------LSFskGDIItVLek~DeGWW~Gr~---~Gr~G~FPSnYV  521 (525)
                      +.++|||||.+..+++       |+|.+||+|.|+...+.+||.|+.   +|..||||++|+
T Consensus        24 f~vra~~dy~~~~d~~~p~~~~~LsF~kGDii~V~~~~d~~WW~gr~~~~~g~~G~iPS~~~   85 (145)
T d1vyva1          24 FAVKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLR   85 (145)
T ss_dssp             EEEEESSCBCTTSCCSCSSTTCBCCBCTTCEEEEEEEEETTEEEEEESSTTCCCEEEECHHH
T ss_pred             EEEEEeeeeCCccCCcCCcccccccCcCCCEEEEeeccCCCcEEEEEcCCCCceeEeCCchh
Confidence            4799999999999887       999999999999999999999996   799999999764

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.48  E-value=2.8e-08  Score=88.07  Aligned_cols=53  Identities=21%  Similarity=0.498  Sum_probs=47.2

Q ss_pred             ccEEEEeccCCCCCCCC-------cccCCCCeEEEEEeecCCeEEEEE---CCeeeeecCCCe
Q psy194          469 GYTAVALYDYQASADDE-------ISFDPDDIITNIEMIDEGWWRGYC---HGQYGLFPANYV  521 (525)
Q Consensus       469 g~~AvALYDYqAqsedE-------LSFskGDIItVLek~DeGWW~Gr~---~Gr~G~FPSnYV  521 (525)
                      .+.++|+|+|.+..+++       |+|.+||||.|+...+.+||.|++   +|..||||++|+
T Consensus        23 ~~~vra~~~Y~~~~d~~~P~~~~~LsF~~gdil~v~~~~d~~WW~~r~~~~~~~~G~iPs~~~   85 (136)
T d1vyua1          23 AFAVRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQR   85 (136)
T ss_dssp             CEEEEESSCEEGGGCTTCSSTTCBCEECTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHH
T ss_pred             eEEEEEeeccCCCCCCCCcccCcccCCCCCCEEEEEeccCCCcEEEEeccCCCceeccCchHH
Confidence            35789999999998777       899999999999999999999995   578899999773

>d1ri9a_ b.34.2.1 (A:) Fyn-binding protein (T-cell adapter protein adap) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn-binding protein (T-cell adapter protein adap)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.56  E-value=0.034  Score=44.36  Aligned_cols=40  Identities=18%  Similarity=0.351  Sum_probs=36.2

Q ss_pred             CCCCcccCCCCeEEEEEeecCCeEEEE-ECCeeeeecCCCe
Q psy194          482 ADDEISFDPDDIITNIEMIDEGWWRGY-CHGQYGLFPANYV  521 (525)
Q Consensus       482 sedELSFskGDIItVLek~DeGWW~Gr-~~Gr~G~FPSnYV  521 (525)
                      +..+|++.+|+.|.||...+.+-|.|+ ..|+.|+++.++|
T Consensus        35 g~~dL~vk~GE~ldVIr~t~~~k~LcRN~~GkYGYV~~~~l   75 (77)
T d1ri9a_          35 GTRDLQVKPGESLEVIQTTDDTKVLCRNEEGKYGYVLRSYL   75 (77)
T ss_dssp             CTTBCCCCTTCBCEEEEESSSSEEEEEETTTEEEEEEGGGS
T ss_pred             CcccCCcCCCCEEEEEEeCCCCeEEEEcCCCcEEEEEeeee
Confidence            456899999999999999999999999 7999999998775