Psyllid ID: psy205

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
MNRFFSSSGVPRGGSLRERTYSGDKQERAHHRRFSAHIVARRESTFTSIDAAIRRPSLAAVAERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLMRKQQQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHccccccccEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccEEEEEEEcccEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccEcccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccHHHEHHHHHHHHccccccEEccEEEEccccHHHHHHHcc
Coil and Loop (DISEMBL)
mnrffsssgvprggslrertysgdkqerahHRRFSAHIVARRESTFTSIDAAIRRPSLAAVAERGSWGSRWEFLLSCVGLSvgignvwrfpylayqngggflmrkqqq
Flexible Loop (DISEMBL)
mnrffsssgvprggslrertysgdkqerahhrrfsahivarrestftsidaairrPSLAAVAERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLMRKQQQ
Low Complexity Region (SEG)
MNRFFSSSGVPRGGSLRERTYSGDKQERAHHRRFSAHIVARRESTFTSIDAAIRRPSLAAVAERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLMRKQQQ
Disordered region (IsUnstruct)
***********************************AHIVARRESTFTSIDAAIRRPSLAAVAERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFL******
Disordered Region (DISOPRED)
**********************************************************************WEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLMRKQ**
Disordered Region (DISEMBL)
*************GSLR*************HRRFSAHIVARRESTFTSIDAAIRRPSLAAVAERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLMRKQQQ
Disordered Region (DISPRO)
****************************************************************GSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLMRKQQ*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNRFFSSSGVPRGGSLRERTYSGDKQERAHHRRFSAHIVARRESTFTSIDAAIRRPSLAAVAERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLMRKQQQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	108	2.2.26 [Sep-21-2011]
B4GVM9	652	Sodium-dependent nutrient	N/A	N/A	0.509	0.084	0.491	3e-12
O18875	635	Sodium- and chloride-depe	yes	N/A	0.490	0.083	0.555	4e-12
B3MRS1	640	Sodium-dependent nutrient	N/A	N/A	0.407	0.068	0.613	1e-11
P58295	799	Sodium- and chloride-depe	yes	N/A	0.370	0.050	0.65	2e-11
Q761V0	799	Sodium- and chloride-depe	yes	N/A	0.370	0.050	0.65	2e-11
Q9Y345	797	Sodium- and chloride-depe	yes	N/A	0.370	0.050	0.65	2e-11
A7Y2W8	633	Sodium- and chloride-depe	N/A	N/A	0.379	0.064	0.634	2e-11
Q6PGE7	637	Sodium-dependent proline	no	N/A	0.388	0.065	0.619	2e-11
P28573	637	Sodium-dependent proline	no	N/A	0.388	0.065	0.619	2e-11
Q9W4C5	641	Sodium-dependent nutrient	no	N/A	0.388	0.065	0.619	2e-11

>sp|B4GVM9|NAAT1_DROPE Sodium-dependent nutrient amino acid transporter 1 OS=Drosophila persimilis GN=NAAT1 PE=3 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 43/61 (70%), Gaps = 6/61 (9%)

Query: 43  ESTFTSIDAAIRRPSLAAVAERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFL 102
           E+T   +DA  ++P      ER +WG+  EFL+SC+ +SVG+GNVWRFP+ AY+NGGG  
Sbjct: 41  ETTTEKVDAEQQKP------ERTNWGNGLEFLMSCISVSVGLGNVWRFPFTAYENGGGAF 94

Query: 103 M 103
           +
Sbjct: 95  L 95

Unusual broad substrate spectrum amino acid:sodium cotransporter that promotes absorption of the D isomers of essential amino acids. Neutral amino acids are the preferred substrates, especially methionine and phenylalanine.
Drosophila persimilis (taxid: 7234)

>sp|O18875|SC6A8_BOVIN Sodium- and chloride-dependent creatine transporter 1 OS=Bos taurus GN=SLC6A8 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/54 (55%), Positives = 40/54 (74%), Gaps = 1/54 (1%)

Query: 51  AAIRRP-SLAAVAERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLM 103
           AA+  P SL AV  R +W  + +F++SCVG +VG+GNVWRFPYL Y+NGGG  +
Sbjct: 38  AALGAPGSLLAVPPRETWTRQMDFIMSCVGFAVGLGNVWRFPYLCYKNGGGVFL 91

Required for the uptake of creatine. Plays an important role in supplying creatine to the brain via the blood-brain barrier.

Bos taurus (taxid: 9913)

>sp|B3MRS1|NAAT1_DROAN Sodium-dependent nutrient amino acid transporter 1 OS=Drosophila ananassae GN=NAAT1 PE=3 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/44 (61%), Positives = 36/44 (81%)

Query: 60  AVAERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLM 103
           A AER +WG+  EFL+SC+ +SVG+GNVWRFP+ AY+NGGG  +
Sbjct: 24  AKAERTNWGNGLEFLMSCISVSVGLGNVWRFPFTAYENGGGAFL 67

Unusual broad substrate spectrum amino acid:sodium cotransporter that promotes absorption of the D isomers of essential amino acids. Neutral amino acids are the preferred substrates, especially methionine and phenylalanine.

Drosophila ananassae (taxid: 7217)

>sp|P58295|SC6A5_RAT Sodium- and chloride-dependent glycine transporter 2 OS=Rattus norvegicus GN=Slc6a5 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/40 (65%), Positives = 34/40 (85%)

Query: 64  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLM 103
           RG+W S+ +F+LS VG +VG+GNVWRFPYLA+QNGGG  +
Sbjct: 193 RGNWSSKLDFILSMVGYAVGLGNVWRFPYLAFQNGGGAFL 232

Terminates the action of glycine by its high affinity sodium-dependent reuptake into presynaptic terminals. May be responsible for the termination of neurotransmission at strychnine-sensitive glycinergic synapses.

Rattus norvegicus (taxid: 10116)

>sp|Q761V0|SC6A5_MOUSE Sodium- and chloride-dependent glycine transporter 2 OS=Mus musculus GN=Slc6a5 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/40 (65%), Positives = 34/40 (85%)

Query: 64  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLM 103
           RG+W S+ +F+LS VG +VG+GNVWRFPYLA+QNGGG  +
Sbjct: 193 RGNWSSKLDFILSMVGYAVGLGNVWRFPYLAFQNGGGAFL 232

Terminates the action of glycine by its high affinity sodium-dependent reuptake into presynaptic terminals. May be responsible for the termination of neurotransmission at strychnine-sensitive glycinergic synapses.

Mus musculus (taxid: 10090)

>sp|Q9Y345|SC6A5_HUMAN Sodium- and chloride-dependent glycine transporter 2 OS=Homo sapiens GN=SLC6A5 PE=1 SV=3

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/40 (65%), Positives = 34/40 (85%)

Query: 64  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLM 103
           RG+W S+ +F+LS VG +VG+GNVWRFPYLA+QNGGG  +
Sbjct: 191 RGNWSSKLDFILSMVGYAVGLGNVWRFPYLAFQNGGGAFL 230

Terminates the action of glycine by its high affinity sodium-dependent reuptake into presynaptic terminals. May be responsible for the termination of neurotransmission at strychnine-sensitive glycinergic synapses.

Homo sapiens (taxid: 9606)

>sp|A7Y2W8|SC6A9_XENLA Sodium- and chloride-dependent glycine transporter 1 OS=Xenopus laevis GN=slc6a9 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 35/41 (85%)

Query: 63  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLM 103
           +RG+WG++ EF+L+ VG +VG+GNVWRFPYL Y+NGGG  M
Sbjct: 21  KRGNWGNQIEFVLTSVGYAVGLGNVWRFPYLCYRNGGGAFM 61

Terminates the action of glycine by its high affinity sodium-dependent reuptake into presynaptic terminals. May play a role in regulation of glycine levels in NMDA receptor-mediated neurotransmission.

Xenopus laevis (taxid: 8355)

>sp|Q6PGE7|SC6A7_MOUSE Sodium-dependent proline transporter OS=Mus musculus GN=Slc6a7 PE=2 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 62  AERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLM 103
           A+RG+W  + +FLLSC+G  VG+GNVWRFPY AY NGGG  +
Sbjct: 35  ADRGNWTGKLDFLLSCIGYCVGLGNVWRFPYRAYTNGGGAFL 76

Terminates the action of proline by its high affinity sodium-dependent reuptake into presynaptic terminals.

Mus musculus (taxid: 10090)

>sp|P28573|SC6A7_RAT Sodium-dependent proline transporter OS=Rattus norvegicus GN=Slc6a7 PE=2 SV=2

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 62  AERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLM 103
           A+RG+W  + +FLLSC+G  VG+GNVWRFPY AY NGGG  +
Sbjct: 35  ADRGNWTGKLDFLLSCIGYCVGLGNVWRFPYRAYTNGGGAFL 76

Terminates the action of proline by its high affinity sodium-dependent reuptake into presynaptic terminals.

Rattus norvegicus (taxid: 10116)

>sp|Q9W4C5|NAAT1_DROME Sodium-dependent nutrient amino acid transporter 1 OS=Drosophila melanogaster GN=NAAT1 PE=1 SV=2

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 35/42 (83%)

Query: 62  AERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLM 103
           AER +WG+  EFL+SC+ +SVG+GNVWRFP+ AY+NGGG  +
Sbjct: 36  AERTNWGNGLEFLMSCISVSVGLGNVWRFPFTAYENGGGAFL 77

Unusual broad substrate spectrum amino acid:sodium cotransporter that promotes absorption of the D isomers of essential amino acids. Neutral amino acids are the preferred substrates, especially methionine and phenylalanine.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	108
391329891	714	PREDICTED: sodium- and chloride-dependen	0.462	0.070	0.78	2e-18
157127402	443	sodium/shloride dependent amino acid tra	0.435	0.106	0.638	4e-13
157127400	569	sodium/shloride dependent amino acid tra	0.425	0.080	0.673	6e-13
442761189	729	Putative sodium-neurotransmitter symport	0.379	0.056	0.738	1e-12
241697170	525	GABA transporter, putative [Ixodes scapu	0.379	0.078	0.738	1e-12
155966784	442	sodium-dependent alanine transporter 1 [	0.379	0.092	0.707	1e-12
432899474	648	PREDICTED: sodium-dependent proline tran	0.851	0.141	0.397	2e-12
307201521	1269	Uncharacterized sodium-dependent transpo	0.759	0.064	0.458	2e-12
348538762	651	PREDICTED: sodium-dependent proline tran	0.444	0.073	0.583	2e-12
390366875	659	PREDICTED: sodium- and chloride-dependen	0.379	0.062	0.707	3e-12

>gi|391329891|ref|XP_003739400.1| PREDICTED: sodium- and chloride-dependent glycine transporter 2-like [Metaseiulus occidentalis]

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/50 (78%), Positives = 46/50 (92%)

Query: 54  RRPSLAAVAERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLM 103
           RR S+A++A RG+WG+RWEFLLSCVGLSVGIGNVWRFPYLAY+NGGG  +
Sbjct: 60  RRNSVASIASRGNWGNRWEFLLSCVGLSVGIGNVWRFPYLAYKNGGGAFL 109

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157127402|ref|XP_001654962.1| sodium/shloride dependent amino acid transporter [Aedes aegypti] gi|108882397|gb|EAT46622.1| AAEL002210-PA [Aedes aegypti]

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/47 (63%), Positives = 40/47 (85%)

Query: 57  SLAAVAERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLM 103
           S+A+V ERGSW S+ EF+LSC+G ++G+GNVWRFPYL Y+NGGG  +
Sbjct: 24  SMASVKERGSWASKTEFILSCLGYAIGLGNVWRFPYLCYRNGGGAFL 70

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157127400|ref|XP_001654961.1| sodium/shloride dependent amino acid transporter [Aedes aegypti] gi|108882396|gb|EAT46621.1| AAEL002236-PA [Aedes aegypti]

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/46 (67%), Positives = 37/46 (80%)

Query: 58  LAAVAERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLM 103
           +  V ERGSW SR EF+LSC+G ++GIGNVWRFPYL YQNGGG  +
Sbjct: 1   MTPVKERGSWASRTEFILSCLGYAIGIGNVWRFPYLCYQNGGGAFL 46

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442761189|gb|JAA72753.1| Putative sodium-neurotransmitter symporter, partial [Ixodes ricinus]

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/42 (73%), Positives = 38/42 (90%), Gaps = 1/42 (2%)

Query: 63  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGG-FLM 103
           ERG W ++ EF+LSC+GLSVGIGN+WRFP+LAYQNGGG FL+
Sbjct: 118 ERGQWANKTEFILSCIGLSVGIGNIWRFPFLAYQNGGGAFLL 159

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241697170|ref|XP_002413104.1| GABA transporter, putative [Ixodes scapularis] gi|215506918|gb|EEC16412.1| GABA transporter, putative [Ixodes scapularis]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/42 (73%), Positives = 38/42 (90%), Gaps = 1/42 (2%)

Query: 63  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGG-FLM 103
           ERG W ++ EF+LSC+GLSVGIGN+WRFP+LAYQNGGG FL+
Sbjct: 11  ERGQWANKTEFILSCIGLSVGIGNIWRFPFLAYQNGGGAFLL 52

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|155966784|gb|ABU41322.1| sodium-dependent alanine transporter 1 [Strongylocentrotus purpuratus]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/41 (70%), Positives = 37/41 (90%)

Query: 63  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLM 103
           ERG+WGS+ +F+LSCVG +VG+GNVWRFPYLAY+NGGG  +
Sbjct: 23  ERGNWGSKLDFILSCVGYAVGLGNVWRFPYLAYENGGGAFL 63

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|432899474|ref|XP_004076576.1| PREDICTED: sodium-dependent proline transporter-like [Oryzias latipes]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/98 (39%), Positives = 54/98 (55%), Gaps = 6/98 (6%)

Query: 6   SSSGVPRGGSLRERTYSGDKQERAHHRRFSAHIVARRESTFTSIDAAIRRPSLAAVAERG 65
           +++G P GG   +R  +  K+   H    + H  A   S     D+    P +A    R 
Sbjct: 8   ATAGSPAGG---DRAAAAQKE---HAITQNGHNPAHTASHDQGFDSPGPGPIVANTTPRE 61

Query: 66  SWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLM 103
            WG ++EFLLSC+G  VG+GNVWRFPYL Y+NGGG  +
Sbjct: 62  QWGGKYEFLLSCIGYCVGLGNVWRFPYLCYRNGGGVFL 99

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|307201521|gb|EFN81284.1| Uncharacterized sodium-dependent transporter CG3252 [Harpegnathos saltator]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/85 (45%), Positives = 48/85 (56%), Gaps = 3/85 (3%)

Query: 19  RTYSGDKQERAHHRRFSAHIVARRESTFTSIDAAIRRPSLAAVAERGSWGSRWEFLLSCV 78
           + Y GDK E     + S   V   E+    + AAI+        +R  WGS  EFL+SCV
Sbjct: 680 KNYVGDKNEIPGVFKLSVPPVGELEN---RVSAAIKEEEQEEGKKRAQWGSDLEFLMSCV 736

Query: 79  GLSVGIGNVWRFPYLAYQNGGGFLM 103
             SVG+GNVWRFPY AYQNGGG  +
Sbjct: 737 AFSVGLGNVWRFPYTAYQNGGGAFL 761

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|348538762|ref|XP_003456859.1| PREDICTED: sodium-dependent proline transporter-like [Oreochromis niloticus]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/48 (58%), Positives = 37/48 (77%)

Query: 56  PSLAAVAERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLM 103
           P+ A + +R  WG ++EFLLSC+G  VG+GNVWRFPYL Y+NGGG  +
Sbjct: 55  PTPAPIVQREQWGGKYEFLLSCIGYCVGLGNVWRFPYLCYRNGGGVFL 102

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|390366875|ref|XP_799073.3| PREDICTED: sodium- and chloride-dependent glycine transporter 2 isoform 2 [Strongylocentrotus purpuratus] gi|390366877|ref|XP_003731131.1| PREDICTED: sodium- and chloride-dependent glycine transporter 2 isoform 1 [Strongylocentrotus purpuratus]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/41 (70%), Positives = 37/41 (90%)

Query: 63  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLM 103
           ERG+WGS+ +F+LSCVG +VG+GNVWRFPYLAY+NGGG  +
Sbjct: 23  ERGNWGSKLDFILSCVGYAVGLGNVWRFPYLAYENGGGAFL 63

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	108
UNIPROTKB|E9PJ65	134	SLC6A9 "Transporter" [Homo sap	0.379	0.305	0.634	1.3e-13
UNIPROTKB|I3LFP8	132	LOC100625136 "Transporter" [Su	0.407	0.333	0.622	2.6e-13
FB|FBgn0039915	636	CG1732 [Drosophila melanogaste	0.75	0.127	0.406	2e-12
UNIPROTKB|B4GVM9	652	NAAT1 "Sodium-dependent nutrie	0.583	0.096	0.485	5.5e-12
UNIPROTKB|O18875	635	SLC6A8 "Sodium- and chloride-d	0.490	0.083	0.581	1.4e-11
ZFIN|ZDB-GENE-070112-1492	652	zgc:158225 "zgc:158225" [Danio	0.370	0.061	0.682	2.4e-11
UNIPROTKB|P48067	706	SLC6A9 "Sodium- and chloride-d	0.379	0.058	0.634	2.4e-11
ZFIN|ZDB-GENE-050105-2	786	slc6a5 "solute carrier family	0.370	0.050	0.658	2.6e-11
WB|WBGene00004910	610	snf-11 [Caenorhabditis elegans	0.407	0.072	0.622	2.8e-11
UNIPROTKB|E1BPI1	631	SLC6A11 "Transporter" [Bos tau	0.407	0.069	0.622	2.9e-11

UNIPROTKB|E9PJ65 SLC6A9 "Transporter" [Homo sapiens (taxid:9606)]

 Score = 158 (60.7 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
 Identities = 26/41 (63%), Positives = 35/41 (85%)

Query:    63 ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLM 103
             +RG+WG++ EF+L+ VG +VG+GNVWRFPYL Y+NGGG  M
Sbjct:    45 KRGNWGNQIEFVLTSVGYAVGLGNVWRFPYLCYRNGGGAFM 85

GO:0005283 "sodium:amino acid symporter activity" evidence=IEA

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

UNIPROTKB|I3LFP8 LOC100625136 "Transporter" [Sus scrofa (taxid:9823)]

 Score = 154 (59.3 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
 Identities = 28/45 (62%), Positives = 35/45 (77%)

Query:    60 AVAERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGG-FLM 103
             AV ERG W ++ EF+LS  G  +G+GNVWRFPYL Y+NGGG FL+
Sbjct:    45 AVHERGQWNNKVEFVLSVAGEIIGLGNVWRFPYLCYKNGGGAFLI 89

GO:0016021 "integral to membrane" evidence=IEA

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

FB|FBgn0039915 CG1732 [Drosophila melanogaster (taxid:7227)]

 Score = 176 (67.0 bits), Expect = 2.0e-12, P = 2.0e-12
 Identities = 35/86 (40%), Positives = 55/86 (63%)

Query:    23 GD--KQERAHHRRFSAHIVARRESTFTSIDAAIRRP--SLAAVAERGSWGSRWEFLLSCV 78
             GD  K E     +   H  + + S+ T+ D + ++    +  + +RGSW S+ +F+LS V
Sbjct:    13 GDVCKHESIEMSKELGHTTSLQSSSPTTTDTSNKQQLVKIEQLPDRGSWSSKMDFILSVV 72

Query:    79 GLSVGIGNVWRFPYLAYQNGGG-FLM 103
             GL++G+GNVWRFPYL Y+NGGG F++
Sbjct:    73 GLAIGLGNVWRFPYLCYKNGGGAFIL 98

GO:0005332 "gamma-aminobutyric acid:sodium symporter activity" evidence=ISS

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

GO:0006836 "neurotransmitter transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|B4GVM9 NAAT1 "Sodium-dependent nutrient amino acid transporter 1" [Drosophila persimilis (taxid:7234)]

 Score = 172 (65.6 bits), Expect = 5.5e-12, P = 5.5e-12
 Identities = 34/70 (48%), Positives = 48/70 (68%)

Query:    35 SAHIVARRESTFTSIDAAIRRPSLAAVAERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLA 94
             +A   A  E+T   +DA  ++P      ER +WG+  EFL+SC+ +SVG+GNVWRFP+ A
Sbjct:    33 TAEAAASLETTTEKVDAEQQKP------ERTNWGNGLEFLMSCISVSVGLGNVWRFPFTA 86

Query:    95 YQNGGG-FLM 103
             Y+NGGG FL+
Sbjct:    87 YENGGGAFLI 96

GO:0005283 "sodium:amino acid symporter activity" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=IC

GO:0006814 "sodium ion transport" evidence=ISS

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=ISS

GO:0015804 "neutral amino acid transport" evidence=ISS

GO:0042940 "D-amino acid transport" evidence=ISS

GO:0042943 "D-amino acid transmembrane transporter activity" evidence=ISS

UNIPROTKB|O18875 SLC6A8 "Sodium- and chloride-dependent creatine transporter 1" [Bos taurus (taxid:9913)]

 Score = 168 (64.2 bits), Expect = 1.4e-11, P = 1.4e-11
 Identities = 32/55 (58%), Positives = 42/55 (76%)

Query:    51 AAIRRP-SLAAVAERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGG-FLM 103
             AA+  P SL AV  R +W  + +F++SCVG +VG+GNVWRFPYL Y+NGGG FL+
Sbjct:    38 AALGAPGSLLAVPPRETWTRQMDFIMSCVGFAVGLGNVWRFPYLCYKNGGGVFLI 92

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

GO:0005309 "creatine:sodium symporter activity" evidence=IEA

ZFIN|ZDB-GENE-070112-1492 zgc:158225 "zgc:158225" [Danio rerio (taxid:7955)]

 Score = 166 (63.5 bits), Expect = 2.4e-11, P = 2.4e-11
 Identities = 28/41 (68%), Positives = 34/41 (82%)

Query:    64 RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGG-FLM 103
             R  WG ++EFLLSC+G  VG+GNVWRFPYL Y+NGGG FL+
Sbjct:    71 RDQWGGKYEFLLSCIGYCVGLGNVWRFPYLCYRNGGGVFLI 111

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

GO:0006836 "neurotransmitter transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015293 "symporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|P48067 SLC6A9 "Sodium- and chloride-dependent glycine transporter 1" [Homo sapiens (taxid:9606)]

 Score = 158 (60.7 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
 Identities = 26/41 (63%), Positives = 35/41 (85%)

Query:    63 ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLM 103
             +RG+WG++ EF+L+ VG +VG+GNVWRFPYL Y+NGGG  M
Sbjct:    99 KRGNWGNQIEFVLTSVGYAVGLGNVWRFPYLCYRNGGGAFM 139

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0016020 "membrane" evidence=TAS

GO:0006810 "transport" evidence=TAS

GO:0015375 "glycine:sodium symporter activity" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

ZFIN|ZDB-GENE-050105-2 slc6a5 "solute carrier family 6 (neurotransmitter transporter, glycine), member 5" [Danio rerio (taxid:7955)]

 Score = 157 (60.3 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
 Identities = 27/41 (65%), Positives = 36/41 (87%)

Query:    64 RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGG-FLM 103
             RG+W ++ +F+LS VG +VG+GNVWRFPYLA+QNGGG FL+
Sbjct:   177 RGNWSNKLDFILSMVGYAVGLGNVWRFPYLAFQNGGGAFLI 217

GO:0016021 "integral to membrane" evidence=IEA

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

GO:0006836 "neurotransmitter transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015293 "symporter activity" evidence=IEA

WB|WBGene00004910 snf-11 [Caenorhabditis elegans (taxid:6239)]

 Score = 165 (63.1 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 28/45 (62%), Positives = 37/45 (82%)

Query:    60 AVAERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGG-FLM 103
             +VAER  W S  +F++SC+G ++G+GNVWRFPYL YQNGGG FL+
Sbjct:     6 SVAEREQWSSWADFIMSCIGYAIGLGNVWRFPYLCYQNGGGAFLI 50

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

GO:0006836 "neurotransmitter transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005332 "gamma-aminobutyric acid:sodium symporter activity" evidence=IDA

GO:0015812 "gamma-aminobutyric acid transport" evidence=IDA

GO:0043005 "neuron projection" evidence=IDA

GO:0044297 "cell body" evidence=IDA

UNIPROTKB|E1BPI1 SLC6A11 "Transporter" [Bos taurus (taxid:9913)]

 Score = 153 (58.9 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
 Identities = 28/45 (62%), Positives = 35/45 (77%)

Query:    60 AVAERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGG-FLM 103
             AV ERG W ++ EF+LS  G  +G+GNVWRFPYL Y+NGGG FL+
Sbjct:    44 AVHERGHWNNKVEFVLSVAGEIIGLGNVWRFPYLCYKNGGGAFLI 88

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005332 "gamma-aminobutyric acid:sodium symporter activity" evidence=IEA

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O18875	SC6A8_BOVIN	No assigned EC number	0.5555	0.4907	0.0834	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	108
cd10324	417	cd10324, SLC6sbd, Solute carrier 6 family, neurotr	3e-20
cd11496	543	cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-depen	3e-19
pfam00209	506	pfam00209, SNF, Sodium:neurotransmitter symporter	1e-17
cd11500	544	cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent	2e-17
cd10332	565	cd10332, SLC6sbd-B0AT-like, System B(0) neutral am	4e-17
cd11501	601	cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent	1e-16
cd10334	480	cd10334, SLC6sbd_u1, uncharacterized bacterial and	2e-16
cd11498	585	cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent	2e-15
cd11499	606	cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent	3e-15
cd10336	439	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfa	4e-15
cd11497	539	cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-depen	4e-15
COG0733	439	COG0733, COG0733, Na+-dependent transporters of th	1e-14
cd11509	592	cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent c	3e-14
cd11506	598	cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent	1e-13
cd11513	537	cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent	2e-13
cd11511	541	cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent	2e-13
cd11508	542	cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent	4e-13
cd11507	544	cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent	1e-12
cd11522	580	cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-ch	1e-12
cd11517	576	cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3	2e-12
cd11512	560	cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent n	3e-12
cd11510	542	cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent	3e-12
cd11514	555	cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent	7e-12
cd11556	552	cd11556, SLC6sbd_SERT-like_u1, uncharacterized sub	8e-12
cd11515	530	cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurot	1e-11
cd11516	581	cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral am	1e-11
cd11521	589	cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransm	2e-11
cd11502	543	cd11502, SLC6sbd_NTT5, Neurotransmitter transporte	3e-11
cd11554	406	cd11554, SLC6sbd_u2, uncharacterized eukaryotic so	6e-11
cd10333	500	cd10333, LeuT-like_sbd, Aquifex aeolicus LeuT and	2e-10
cd11518	576	cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent	6e-10

>gnl|CDD|212034 cd10324, SLC6sbd, Solute carrier 6 family, neurotransmitter transporters; solute-binding domain

 Score = 83.3 bits (207), Expect = 3e-20
 Identities = 29/39 (74%), Positives = 34/39 (87%), Gaps = 1/39 (2%)

Query: 65  GSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGG-FL 102
             WGS+ EFLLSC+G +VG+GNVWRFPYLAY+NGGG FL
Sbjct: 1   EQWGSKLEFLLSCIGYAVGLGNVWRFPYLAYENGGGAFL 39

This family represents the solute-binding domain of SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family). These use sodium and chloride electrochemical gradients to catalyze the thermodynamically uphill movement of a variety of substrates, and include neurotransmitter transporters (NTTs). The latter are Na+/Cl--dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. NTTs are widely expressed in the mammalian brain, and are involved in regulating neurotransmitter signaling and homeostasis, through facilitating the uptake of released neurotransmitters from the extracellular space into neurons and glial cells. NTTs are the target of a range of therapeutic drugs for the treatment of psychiatric diseases, such as major depression, anxiety disorders, attention deficit hyperactivity disorder and epilepsy. In addition, they are the primary targets of cocaine, amphetamines and other psychostimulants. This family also includes Drosophila Blot which is expressed primarily in epithelial tissues of ectodermal origin and in the nervous system of the embryo and larvae, but in addition found in the developing oocyte and the freshly laid egg. A lack or reduction of Blot function during oogenesis results in early arrest of embryonic development. 12 transmembrane helices (TMs) appears to be common for eukaryotic and some prokaryotic and archaeal SLC6s, (a core inverted topology repeat, TM1-5 and TM6-10, plus TMs11-12; TMs numbered to conform to the SLC6 Aquifex aeolicus LeuT), although a majority of bacterial, and some archaeal SLC6s lack TM12, for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1. Length = 417

>gnl|CDD|212065 cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-dependent taurine transporter TauT, and related proteins; solute-binding domain

 Score = 80.7 bits (200), Expect = 3e-19
 Identities = 25/40 (62%), Positives = 32/40 (80%), Gaps = 1/40 (2%)

Query: 64  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGG-FL 102
           RG W ++ +FLLS  G ++G+GNVWRFPYL Y+NGGG FL
Sbjct: 1   RGKWSNKIDFLLSVAGYAIGLGNVWRFPYLCYKNGGGAFL 40

This subgroup represents the solute-binding domain of TauT-like Na(+)- and Cl(-)-dependent transporters. Family members include: human TauT which transports taurine, human GAT1, GAT2, and GAT3, and BGT1, which transport gamma-aminobutyric acid (GABA), and human CT1 which transports creatine. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 543

>gnl|CDD|215790 pfam00209, SNF, Sodium:neurotransmitter symporter family

 Score = 76.2 bits (188), Expect = 1e-17
 Identities = 25/40 (62%), Positives = 32/40 (80%), Gaps = 1/40 (2%)

Query: 64  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGG-FL 102
           R +W  + +FLLS +G +VG+GNVWRFPYL Y+NGGG FL
Sbjct: 1   RETWSGKLDFLLSVIGFAVGLGNVWRFPYLCYKNGGGAFL 40

Length = 506

>gnl|CDD|212069 cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent L-proline transporter PROT; solute-binding domain

 Score = 75.9 bits (187), Expect = 2e-17
 Identities = 29/41 (70%), Positives = 34/41 (82%), Gaps = 1/41 (2%)

Query: 64  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGG-FLM 103
           RG WG + EFLLSC+G  VG+GNVWRFPYL Y+NGGG FL+
Sbjct: 1   RGQWGGKLEFLLSCIGYCVGLGNVWRFPYLCYRNGGGAFLI 41

PROT is a high-affinity L-proline transporter that transports L-proline, and may have a role in excitatory neurotransmission. Human PROT is encoded by the SLC6A7 gene, a potential susceptible gene for asthma. PROT is expressed in the brain. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 544

>gnl|CDD|212040 cd10332, SLC6sbd-B0AT-like, System B(0) neutral amino acid transporter AT1, 2 and 3, and related proteins; solute-binding domain

 Score = 74.6 bits (184), Expect = 4e-17
 Identities = 23/40 (57%), Positives = 32/40 (80%), Gaps = 1/40 (2%)

Query: 64  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGG-FL 102
           R +W ++ +FLL+ +G +VG+GNVWRFPYL  +NGGG FL
Sbjct: 1   RPAWDNKLQFLLATIGYAVGLGNVWRFPYLCQKNGGGAFL 40

This subgroup includes the solute-binding domain of transmembrane transporters, which transport, i) neutral amino acids: NTT4 (also called XT1), SBAT1 (also called B0AT2, v7-3, NTT7-3), and B0AT1 (also called HND); the human genes encoding these are SLC6A17, SLC6A15, and SLC6A19 respectively, ii) glycine: B0AT3 (also called Xtrp2, XT2), iii) imino acids, such as proline, pipecolate, MeAIB, and sarcosine: SIT1 (also called XTRP3, XT3, IMINO). The human genes encoding B0AT3 and SIT1 are SLC6A18 and SLC6A20 respectively. Transporters in this subgroup may play a role in disorders including major depression, Hartnup disorder, increased susceptibility to myocardial infarction, and iminoglycinuria. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 565

>gnl|CDD|212070 cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent beta-alanine transporter ATB0+; solute-binding domain

 Score = 73.3 bits (180), Expect = 1e-16
 Identities = 25/41 (60%), Positives = 34/41 (82%), Gaps = 1/41 (2%)

Query: 64  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGG-FLM 103
           RG+W  + ++LLS +G +VG+GNVWRFPYL Y+NGGG FL+
Sbjct: 1   RGNWSKKSDYLLSMIGYAVGLGNVWRFPYLTYKNGGGAFLI 41

ATB0+ (also known as the beta-alanine carrier) is a transmembrane transporter with a broad substrate specificity; it can transport non-alpha-amino acids such as beta-alanine with low affinity, and can transport dipolar and cationic amino acids such as leucine and lysine, with a higher affinity. It may have a role in the absorption of essential nutrients and drugs in the distal regions of the human gastrointestinal tract. Human ATB0+ is encoded by the SLC6A14 gene. ATB0+ is expressed in the lung, trachea, salivary gland, mammary gland, stomach, and pituitary gland. ATB0+ may play a role in obesity, and its upregulation may have a pathogenic role in colorectal cancer. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 601

>gnl|CDD|212042 cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute carrier 6 subfamily; solute-binding domain

 Score = 72.9 bits (180), Expect = 2e-16
 Identities = 25/40 (62%), Positives = 33/40 (82%), Gaps = 1/40 (2%)

Query: 64  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGG-FL 102
           R  WGSR  F+L+ +G +VG+GN+WRFPY+AY+NGGG FL
Sbjct: 1   REQWGSRLGFILAAIGSAVGLGNIWRFPYVAYENGGGAFL 40

SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. Length = 480

>gnl|CDD|212067 cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent glycine transporter GlyT1; solute-binding domain

 Score = 69.6 bits (170), Expect = 2e-15
 Identities = 26/41 (63%), Positives = 35/41 (85%)

Query: 63  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLM 103
           +RG+WG++ EF+L+ VG +VG+GNVWRFPYL Y+NGGG  M
Sbjct: 16  KRGNWGNQIEFVLTSVGYAVGLGNVWRFPYLCYRNGGGAFM 56

GlyT1 is a membrane-bound transporter that re-uptakes glycine from the synaptic cleft. Human GlyT1 is encoded by the SLC6A9 gene. GlyT1 is expressed in brain, pancreas, uterus, stomach, spleen, liver, and retina. GlyT1 may play a role in schizophrenia. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 585

>gnl|CDD|212068 cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent glycine transporter GlyT2; solute-binding domain

 Score = 69.6 bits (170), Expect = 3e-15
 Identities = 27/41 (65%), Positives = 36/41 (87%), Gaps = 1/41 (2%)

Query: 64  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGG-FLM 103
           RG+W ++ +F+LS VG +VG+GNVWRFPYLA+QNGGG FL+
Sbjct: 1   RGNWSNKLDFILSMVGYAVGLGNVWRFPYLAFQNGGGAFLI 41

GlyT2 (also called NET1) is a membrane-bound transporter that re-uptakes glycine from the synaptic cleft. Human GlyT2 is encoded by the SLC6A5 gene. GlyT2 is expressed in brain and spinal cord. GlyT2 may play a role in pain, and in spasticity. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 606

>gnl|CDD|212043 cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain

 Score = 69.0 bits (170), Expect = 4e-15
 Identities = 23/40 (57%), Positives = 30/40 (75%), Gaps = 1/40 (2%)

Query: 65  GSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGG-FLM 103
             W SR  F+L+  G +VG+GN+WRFPYLA +NGGG FL+
Sbjct: 1   EQWSSRLGFILAAAGSAVGLGNIWRFPYLAGENGGGAFLL 40

SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. An arrangement of 12 transmembrane (TM) helices appears to be as a common topological motif for eukaryotic and some prokaryotic and archaeal NTTs. However, this subfamily which contains the majority of bacterial members and some archaeal members, appears to contain only 11 TMs; for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1. Length = 439

>gnl|CDD|212066 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-dependent monoamine transporters, SERT, NET, DAT1 and related proteins; solute binding domain

 Score = 68.9 bits (169), Expect = 4e-15
 Identities = 24/40 (60%), Positives = 32/40 (80%), Gaps = 1/40 (2%)

Query: 64  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGG-FL 102
           R +WG + +FLLS +G +V +GNVWRFPY+ Y+NGGG FL
Sbjct: 1   RETWGKKADFLLSVIGFAVDLGNVWRFPYICYKNGGGAFL 40

This subgroup represents the solute-binding domain of transmembrane transporters that transport monoamine neurotransmitters from synaptic spaces into presynaptic neurons. Members include: NET which transports norepinephrine, SERT which transports serotonin, and DAT1 which transports dopamine. These transporters may play a role in diseases including depression, anxiety disorders, attention-deficit hyperactivity disorder, and in the control of human behavior and emotional states. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 539

>gnl|CDD|223805 COG0733, COG0733, Na+-dependent transporters of the SNF family [General function prediction only]

 Score = 68.0 bits (167), Expect = 1e-14
 Identities = 23/42 (54%), Positives = 31/42 (73%), Gaps = 1/42 (2%)

Query: 62  AERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGG-FL 102
            +R  W SR  F+L+  G +VG+GN+WRFPY+A +NGGG FL
Sbjct: 3   EKREQWSSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFL 44

Length = 439

>gnl|CDD|212078 cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent creatine transporter 1; solute-binding domain

 Score = 66.8 bits (163), Expect = 3e-14
 Identities = 25/41 (60%), Positives = 34/41 (82%), Gaps = 1/41 (2%)

Query: 64  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGG-FLM 103
           R +W  + +F++SCVG +VG+GNVWRFPYL Y+NGGG FL+
Sbjct: 1   RETWTRQMDFIMSCVGFAVGLGNVWRFPYLCYKNGGGVFLI 41

CT1 (also called CRTR, CRT) transports creatine. Human CT1 is encoded by the SLC6A8 gene. CT1 is ubiquitously expressed, with highest levels found in skeletal muscle and kidney. Creatine is absorbed from food or synthesized from arginine and plays an important role in energy metabolism. Deficiency in human CT1 leads to X-linked cerebral creatine transporter deficiency. In males, this disorder is characterized by language and speech delays, autistic-like behavior, seizures in about 50% of cases, and can also involve midfacial hypoplasia, and short stature. In females, it is characterized by mild cognitive impairment with behavior and learning problems. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 592

>gnl|CDD|212075 cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent GABA transporter 1; solute-binding domain

 Score = 65.0 bits (158), Expect = 1e-13
 Identities = 24/42 (57%), Positives = 35/42 (83%), Gaps = 1/42 (2%)

Query: 63  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGG-FLM 103
           +R +W  +++FL+SCVG ++G+GNVWRFPYL  +NGGG FL+
Sbjct: 42  DRDTWKGKFDFLMSCVGYAIGLGNVWRFPYLCGKNGGGAFLI 83

GAT1 transports gamma-aminobutyric acid (GABA). GABA is the main inhibitory neurotransmitter within the mammalian CNS. Human GAT1 is encoded by the SLC6A1 gene. GAT1 is expressed in brain and peripheral nervous system. The antiepileptic drug, Tiagabine, inhibits GAT1. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 598

>gnl|CDD|212082 cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent serotonin transporter SERT; solute-binding domain

 Score = 64.4 bits (157), Expect = 2e-13
 Identities = 25/41 (60%), Positives = 33/41 (80%), Gaps = 1/41 (2%)

Query: 64  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGG-FLM 103
           R +WG + +FLLS +G +V +GNVWRFPY+ YQNGGG FL+
Sbjct: 1   RETWGKKMDFLLSVIGFAVDLGNVWRFPYICYQNGGGAFLI 41

SERT (also called 5-HTT), is a transmembrane transporter that transports the neurotransmitter serotonin from synaptic spaces into presynaptic neurons. The antiport of a K+ ion is believed to follow the transport of serotonin and promote the reorientation of SERT for another transport cycle. Human SERT is encoded by the SLC6A4 gene. SERT is expressed in brain, peripheral nervous system, placenta, epithelium, and platelets. SERT may play a role in diseases or disorders including anxiety, depression, autism, gastrointestinal disorders, premature ejaculation, and obesity. It may also have a role in social cognition. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 537

>gnl|CDD|212080 cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent betaine/GABA transporter-1, and related proteins; solute-binding domain

 Score = 64.2 bits (156), Expect = 2e-13
 Identities = 24/38 (63%), Positives = 30/38 (78%)

Query: 63  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGG 100
           ERG W ++ EF+LS  G  +G+GNVWRFPYL Y+NGGG
Sbjct: 1   ERGQWRNKMEFVLSVAGEIIGLGNVWRFPYLCYKNGGG 38

BGT1 is a relatively low-affinity transporter of gamma-aminobutyric acid (GABA), and can also transport betaine. GABA is the main inhibitory neurotransmitter within the mammalian CNS. Human BGT1 is encoded by the SLC6A12 gene, and is similar to mouse GAT2. Mouse GAT2 plays a role in transporting GABA across the blood-brain barrier. In addition to being expressed in cells of the central nervous system, BGT1 is expressed in peripheral tissues, including kidney, liver, and heart. An association has been shown between the SLC6A12 gene and the occurrence of aspirin-intolerant asthma, and BGT1 is a drug target for antiepileptic drugs. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 541

>gnl|CDD|212077 cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent GABA transporter 3; solute-binding domain

 Score = 63.5 bits (154), Expect = 4e-13
 Identities = 26/42 (61%), Positives = 33/42 (78%), Gaps = 1/42 (2%)

Query: 63  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGG-FLM 103
           ERG W ++ EF+LS  G  +G+GNVWRFPYL Y+NGGG FL+
Sbjct: 1   ERGHWNNKVEFVLSVAGEIIGLGNVWRFPYLCYKNGGGAFLI 42

This family includes human GAT3 (hGAT3) a high-affinity transporter of gamma-aminobutyric acid (GABA). GABA is the main inhibitory neurotransmitter within the mammalian CNS. hGAT3 is encoded by the SLC6A11 gene, and is similar to mouse GAT4, and rat GAT3/GATB. GAT3 is expressed primarily in the glia of the brain, and is a potential drug target for antiepileptic drugs. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 542

>gnl|CDD|212076 cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent GABA transporter 2; solute-binding domain

 Score = 62.2 bits (151), Expect = 1e-12
 Identities = 23/37 (62%), Positives = 29/37 (78%)

Query: 64  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGG 100
           RG W ++ EF+LS  G  +G+GNVWRFPYL Y+NGGG
Sbjct: 1   RGQWNNKLEFVLSVAGEIIGLGNVWRFPYLCYKNGGG 37

This family includes human GAT2 (hGAT2) which transports gamma-aminobutyric acid (GABA). GABA is the main inhibitory neurotransmitter within the mammalian CNS. hGAT2 is encoded by the SLC6A13 gene, and is similar to mouse GAT-3, and rat GAT2. hGAT2 is expressed in brain, kidney, lung, and testis. hGAT2 is a potential drug target for treatment of epilepsy. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 544

>gnl|CDD|212091 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-chain amino-acid transporter 1; solute-binding domain

 Score = 61.9 bits (150), Expect = 1e-12
 Identities = 22/37 (59%), Positives = 30/37 (81%)

Query: 64  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGG 100
           R +W S+ +++L+ VG SVG+GNVWRFPYL  +NGGG
Sbjct: 1   RPAWNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGG 37

SBAT1 (also called B0AT2, v7-3, NTT7-3) is a high-affinity Na(+)-dependent transporter for large neutral amino acids, including leucine, isoleucine, valine, proline and methionine. Human SBAT1 is encoded by the SLC6A15 gene, a susceptibility gene for major depression. SBAT1 is expressed in brain, and may have a role in transporting neurotransmitter precursors into neurons. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 580

>gnl|CDD|212086 cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3; solute-binding domain

 Score = 61.8 bits (150), Expect = 2e-12
 Identities = 23/42 (54%), Positives = 32/42 (76%), Gaps = 1/42 (2%)

Query: 63  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGG-FLM 103
           ER  W ++ ++LLSC+G +VG+GN+WRFPYL    GGG FL+
Sbjct: 1   ERPKWDNKAQYLLSCIGFAVGLGNIWRFPYLCQTYGGGAFLI 42

B0AT3 (also called Xtrp2, XT2) transports glycine. Human B0AT3 is encoded by the SLC6A18 gene. B0AT3 is expressed in the kidney. Mutations in the SLC6A18 gene may contribute to the autosomal recessive disorder iminoglycinuria and its related disorder hyperglycinuria. SLC6A18 or its neighboring genes are associated with increased susceptibility to myocardial infarction. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 576

>gnl|CDD|212081 cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent norepinephrine transporter NET; solute-binding domain

 Score = 61.1 bits (148), Expect = 3e-12
 Identities = 25/41 (60%), Positives = 32/41 (78%), Gaps = 1/41 (2%)

Query: 64  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGG-FLM 103
           R +WG + +FLLS VG +V + NVWRFPYL Y+NGGG FL+
Sbjct: 1   RETWGKKIDFLLSVVGFAVDLANVWRFPYLCYKNGGGAFLI 41

NET (also called NAT1, NET1), is a transmembrane transporter that transports the neurotransmitter norepinephrine from synaptic spaces into presynaptic neurons. Human NET is encoded by the SLC6A2 gene. NET is expressed in brain, peripheral nervous system, adrenal gland, and placenta. NET may play a role in diseases or disorders including depression, orthostatic intolerance, anorexia nervosa, cardiovascular diseases, alcoholism, and attention-deficit hyperactivity disorder. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 560

>gnl|CDD|212079 cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent taurine transporter; solute-binding domain

 Score = 60.6 bits (147), Expect = 3e-12
 Identities = 25/41 (60%), Positives = 31/41 (75%), Gaps = 1/41 (2%)

Query: 64  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGG-FLM 103
           R  W S+ +F+LS  G  VG+GNVWRFPYL Y+NGGG FL+
Sbjct: 1   REKWASKIDFVLSVAGGFVGLGNVWRFPYLCYKNGGGAFLI 41

TauT is a Na(+)- and Cl(-)-dependent, high-affinity, low-capacity transporter of taurine and beta-alanine. Human TauT is encoded by the SLC6A6 gene. TauT is expressed in brain, retina, liver, kidney, heart, spleen, and pancreas. It may play a part in the supply of taurine to the intestinal epithelium and in the between-meal-capture of taurine. It may also participate in re-absorbing taurine that has been deconjugated from bile acids in the distal lumen. Functional TauT protects kidney cells from nephrotoxicity caused by the chemotherapeutic agent cisplatin; cisplatin down-regulates TauT in a p53-dependent manner. In mice, TauT has been shown to be important for the maintenance of skeletal muscle function and total exercise capacity. TauT-/- mice develop additional clinically important diseases, some of which are characterized by apoptosis, including vision loss, olfactory dysfunction, and chronic liver disease. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 542

>gnl|CDD|212083 cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent dopamine transporter 1; solute-binding domain

 Score = 59.9 bits (145), Expect = 7e-12
 Identities = 22/37 (59%), Positives = 29/37 (78%)

Query: 64  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGG 100
           R +WG + +FLLS +G +V + NVWRFPYL Y+NGGG
Sbjct: 1   RETWGKKIDFLLSVIGFAVDLANVWRFPYLCYKNGGG 37

DAT1 (also called DAT), is a plasma membrane transport protein that functions at the dopaminergic synapses to transport dopamine from the extracellular space back into the presynaptic nerve terminal. Human DAT1 is encoded by the SLC6A3 gene, and is expressed in the brain. DAT1 may play a role in diseases or disorders related to dopaminergic neurons, including attention-deficit hyperactivity disorder (ADHD), Tourette syndrome, Parkinson's disease, alcoholism, drug abuse, schizophrenia, extraversion, and risky behavior. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 555

>gnl|CDD|212094 cd11556, SLC6sbd_SERT-like_u1, uncharacterized subgroup of the SERT-like Na(+)- and Cl(-)-dependent monoamine transporter subfamily; solute binding domain

 Score = 59.8 bits (145), Expect = 8e-12
 Identities = 23/41 (56%), Positives = 31/41 (75%), Gaps = 1/41 (2%)

Query: 64  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGG-FLM 103
           R +W  + +FLLS +G +V + NVWRFPYL Y+NGGG FL+
Sbjct: 1   RETWSKKVDFLLSVIGFAVDLANVWRFPYLCYKNGGGAFLI 41

SERT-like Na(+)- and Cl(-)-dependent monoamine transporters, transport monoamine neurotransmitters from synaptic spaces into presynaptic neurons. Members include: the norepinephrine transporter NET, the serotonin transporter SERT , and the dopamine transporter DAT1. These latter may play a role in diseases or disorders including depression, anxiety disorders, and attention-deficit hyperactivity disorder, and in the control of human behavior and emotional states. They belongs to the solute carrier 6 (SLC6) transporter family. Members of this subgroup are uncharacterized. Length = 552

>gnl|CDD|212084 cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurotransmitter transporter 4, and related proteins; solute-binding domain

 Score = 59.2 bits (143), Expect = 1e-11
 Identities = 22/37 (59%), Positives = 30/37 (81%)

Query: 64  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGG 100
           R +W S+ +++L+ VG SVG+GNVWRFPYL  +NGGG
Sbjct: 1   RPAWNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGG 37

This subgroup includes the solute-binding domain of NTT4 (also called XT1) and SBAT1 (also called B0AT2, v7-3, NTT7-3); both these proteins can transport neutral amino acids. Human SBAT1 is encoded by the SLC6A15 gene, a susceptibility gene for major depression. SBAT1 is expressed in brain, and may have a role in transporting neurotransmitter precursors into neurons. Human NTT4 is encoded by the SLC6A17 gene. NTT4 is specifically expressed in the nervous system, in synaptic vesicles of glutamatergic and GABAergic neurons, and may play an important role in synaptic transmission. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 530

>gnl|CDD|212085 cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral amino acids transporter, B0AT1; solute-binding domain

 Score = 59.1 bits (143), Expect = 1e-11
 Identities = 21/40 (52%), Positives = 29/40 (72%)

Query: 64  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLM 103
           R  W ++ +++L+CVG  VG+GNVWRFPYL   +GGG  M
Sbjct: 1   RPKWDNKAQYMLTCVGFCVGLGNVWRFPYLCQSHGGGAFM 40

B0AT1 (also called HND) transports neutral amino acids. Human B0AT1 is encoded by the SLC6A19 gene. B0AT1 is expressed primarily in the kidney and intestine; it requires collectrin for expression in the kidney, and angiotensin-converting enzyme 2 for expression in the intestine. Interaction with these two proteins implicates B0AT1 in more complex processes such as glomerular structure, exocytosis, and blood pressure control. The autosomal recessive disorder, Hartnup disorder, is caused by mutations in B0AT1. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 581

>gnl|CDD|212090 cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransmitter transporter 4; solute-binding domain

 Score = 58.8 bits (142), Expect = 2e-11
 Identities = 21/40 (52%), Positives = 31/40 (77%)

Query: 64  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLM 103
           R +W S+ +++L+ +G SVG+GNVWRFPYL  +NGGG  +
Sbjct: 1   RPAWNSKLQYILAQIGYSVGLGNVWRFPYLCQKNGGGAYL 40

NTT4 (also called XT1) transports the neutral amino acids, proline, glycine, leucine, and alanine, and may play an important role in synaptic transmission. Human NTT4 is encoded by the SLC6A17 gene. NTT4 is specifically expressed in the nervous system, in synaptic vesicles of glutamatergic and GABAergic neurons. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 589

>gnl|CDD|212071 cd11502, SLC6sbd_NTT5, Neurotransmitter transporter 5; solute-binding domain

 Score = 58.2 bits (141), Expect = 3e-11
 Identities = 22/40 (55%), Positives = 31/40 (77%), Gaps = 1/40 (2%)

Query: 64  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGG-FL 102
           R  W ++ E++L+ VG S+G+GN+WRFPYL  +NGGG FL
Sbjct: 1   RPLWRNKTEYILAQVGFSLGLGNLWRFPYLCLRNGGGSFL 40

Human NTT5 is encoded by the SLC6A16 gene. NTT5 is expressed in testis, pancreas, and prostate; its expression is predominantly intracellular, indicative of a vesicular location. Its substrates are unknown. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 543

>gnl|CDD|212092 cd11554, SLC6sbd_u2, uncharacterized eukaryotic solute carrier 6 subfamily; solute-binding domain

 Score = 57.3 bits (139), Expect = 6e-11
 Identities = 18/34 (52%), Positives = 25/34 (73%)

Query: 67  WGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGG 100
           WGSR  F+L+ +G +VG+GN+ RFP + Y NGG 
Sbjct: 3   WGSRTAFVLAAMGGAVGLGNLLRFPSVVYNNGGL 36

SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, and are involved in regulating neurotransmitter signaling and homeostasis, and are the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. Length = 406

>gnl|CDD|212041 cd10333, LeuT-like_sbd, Aquifex aeolicus LeuT and related proteins; solute binding domain

 Score = 55.8 bits (135), Expect = 2e-10
 Identities = 21/40 (52%), Positives = 25/40 (62%)

Query: 64  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLM 103
           R  WGSR   +L+  G +VG+GN  RFP  A QNGGG  M
Sbjct: 1   REHWGSRIGLILAMAGNAVGLGNFLRFPVQAAQNGGGAFM 40

LeuT is a bacterial amino acid transporter with specificity for the hydrophobic amino acids glycine, alanine, methionine, and leucine. This subgroup belongs to the solute carrier 6 (SLC6) transporter family; LeuT has been used as a structural template for understanding fundamental aspects of SLC6 function. It has an arrangement of 12 transmembrane helices (TMs), which appears to be a common motif for eukaryotic and some prokaryotic and archaeal SLC6s: an inverted topology repeat: TMs1-5 and TMs6-10, and TMs11-12. Length = 500

>gnl|CDD|212087 cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent imino acid transporter SIT1; solute-binding domain

 Score = 54.5 bits (131), Expect = 6e-10
 Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 1/41 (2%)

Query: 64  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLA-YQNGGGFLM 103
           R  W +  +F+ +C+  +VG+GNVWRFPYL     GGGFL+
Sbjct: 4   RPLWDNPLQFVFACISYAVGLGNVWRFPYLCQMYGGGGFLI 44

SIT1 (also called XTRP3, XT3, IMINO) transports imino acids, such as proline, pipecolate, MeAIB, and sarcosine. It has weak affinity for neutral amino acids such as phenylalanine. Human SIT1 is encoded by the SLC6A20 gene. SIT1 is expressed in brain, kidney, small intestine, thymus, spleen, ovary, and lung. SLC6A20 is a candidate gene for the rare disorder iminoglycinuria. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 576

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	108
KOG3659|consensus	629		99.73
COG0733	439	Na+-dependent transporters of the SNF family [Gene	99.71
KOG3660|consensus	629		99.69
PF00209	523	SNF: Sodium:neurotransmitter symporter family; Int	99.61

>KOG3659|consensus

Probab=99.73  E-value=8.9e-19  Score=153.32  Aligned_cols=46  Identities=54%  Similarity=1.159  Sum_probs=44.0

Q ss_pred             hhcCCCCCchHHHHHHHhhhhccCCceeecceeeeeeCCeeEEEee
Q psy205           61 VAERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLMRKQ  106 (108)
Q Consensus        61 ~~~R~~Wssk~~fiLa~iG~aVGLGNiWRFPyL~~~nGGgaFlIPY  106 (108)
                      .+.|+.|++|++|+||++|++|.|||+|||||||++||||+|++||
T Consensus        75 ~e~R~~W~~K~eflLa~vgfaV~lgnvWrFpYlC~~nGGgaFlvpY  120 (629)
T KOG3659|consen   75 LEQRPTWGSKTEFLLAVVGFAVDLGNVWRFPYLCYKNGGGAFLVPY  120 (629)
T ss_pred             hccCCcchhHHHHHHHHHHHhhcccccceeeheeeeCCCEeEhHHH
Confidence            3349999999999999999999999999999999999999999999

>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]

Probab=99.71  E-value=1.1e-18  Score=147.95  Aligned_cols=44  Identities=48%  Similarity=1.048  Sum_probs=43.2

Q ss_pred             cCCCCCchHHHHHHHhhhhccCCceeecceeeeeeCCeeEEEee
Q psy205           63 ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLMRKQ  106 (108)
Q Consensus        63 ~R~~Wssk~~fiLa~iG~aVGLGNiWRFPyL~~~nGGgaFlIPY  106 (108)
                      +|++|+||++||||++|.||||||+|||||++++||||||+|||
T Consensus         4 ~re~w~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~y   47 (439)
T COG0733           4 KREQWSSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPY   47 (439)
T ss_pred             cccchhhHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHH
Confidence            68999999999999999999999999999999999999999998

>KOG3660|consensus

Probab=99.69  E-value=1.1e-18  Score=152.80  Aligned_cols=48  Identities=60%  Similarity=1.228  Sum_probs=45.2

Q ss_pred             hhhcCCCCCchHHHHHHHhhhhccCCceeecceeeeeeCCeeEEEeec
Q psy205           60 AVAERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLMRKQQ  107 (108)
Q Consensus        60 ~~~~R~~Wssk~~fiLa~iG~aVGLGNiWRFPyL~~~nGGgaFlIPY~  107 (108)
                      .++.|++|+++.||+|+|+|++|||||||||||+|++||||||||||.
T Consensus        30 ~~~~R~~w~~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~   77 (629)
T KOG3660|consen   30 AEPDRGNWKSKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYL   77 (629)
T ss_pred             cccccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHH
Confidence            334799999999999999999999999999999999999999999994

>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses

Probab=99.61  E-value=1.1e-17  Score=140.21  Aligned_cols=44  Identities=50%  Similarity=1.207  Sum_probs=38.2

Q ss_pred             CCCCCchHHHHHHHhhhhccCCceeecceeeeeeCCeeEEEeec
Q psy205           64 RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLMRKQQ  107 (108)
Q Consensus        64 R~~Wssk~~fiLa~iG~aVGLGNiWRFPyL~~~nGGgaFlIPY~  107 (108)
                      |++|+||.+|+++|+|++||+||+|||||+|++||||+|+|||.
T Consensus         1 R~~w~~~~~~~l~~~g~~vglgn~wrfp~~~~~~gG~~Fli~y~   44 (523)
T PF00209_consen    1 REKWSSKIGFILACIGYAVGLGNIWRFPYLCYENGGGAFLIPYL   44 (523)
T ss_dssp             ----S-HHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHH
T ss_pred             CCcccccccccccccccccccccccccccccccccccccccccc
Confidence            78999999999999999999999999999999999999999994

High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	108
4fxz_A	513	Crystal Structure Of Leut-F253a Bound To L-Leucine		9e-05
3qs4_A	519	Crystal Structure Of Leut Mutant F259v Bound To Sod		9e-05
3mpq_A	507	I204r1 Mutant Of Leut Length = 507		9e-05
2a65_A	519	Crystal Structure Of Leutaa, A Bacterial Homolog Of		9e-05
3tu0_A	519	Crystal Structure Of T355v, S354a, K288a Leut Mutan		9e-05
3tt3_A	519	Crystal Structure Of Leut In The Inward-Open Confor		9e-05
3tt1_A	519	Crystal Structure Of Leut In The Outward-Open Confo		9e-05
3qs6_A	519	Crystal Structure Of Leut Mutant F259v,I359q Bound		9e-05
3gjd_A	515	Crystal Structure Of Leut With Bound Og Length = 51		9e-05
3gjc_A	513	Crystal Structure Of The E290s Mutant Of Leut With		9e-05
3qs5_A	519	Crystal Structure Of Leut Mutant I359q Bound To Sod		9e-05
3mpn_A	507	F177r1 Mutant Of Leut Length = 507		1e-04
3f3d_A	517	Crystal Structure Of Leut Bound To L-Methionine And		1e-04
2qju_A	511	Crystal Structure Of An Nss Homolog With Bound Anti		1e-04
3f3a_A	508	Crystal Structure Of Leut Bound To L-Tryptophan And		1e-04

>pdb|4FXZ|A Chain A, Crystal Structure Of Leut-F253a Bound To L-Leucine From Lipid Bicelles Length = 513

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 63  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLM 103
           +R  W +R   +L+  G +VG+GN  RFP  A +NGGG  M
Sbjct: 4   KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFM 44

>pdb|3QS4|A Chain A, Crystal Structure Of Leut Mutant F259v Bound To Sodium And L- Tryptophan Length = 519

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 63  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLM 103
           +R  W +R   +L+  G +VG+GN  RFP  A +NGGG  M
Sbjct: 4   KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFM 44

>pdb|3MPQ|A Chain A, I204r1 Mutant Of Leut Length = 507

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 63  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLM 103
           +R  W +R   +L+  G +VG+GN  RFP  A +NGGG  M
Sbjct: 1   KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFM 41

>pdb|2A65|A Chain A, Crystal Structure Of Leutaa, A Bacterial Homolog Of Na+/cl--dependent Neurotransmitter Transporters Length = 519

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 63  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLM 103
           +R  W +R   +L+  G +VG+GN  RFP  A +NGGG  M
Sbjct: 4   KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFM 44

>pdb|3TU0|A Chain A, Crystal Structure Of T355v, S354a, K288a Leut Mutant In Complex With Alanine And Sodium Length = 519

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 63  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLM 103
           +R  W +R   +L+  G +VG+GN  RFP  A +NGGG  M
Sbjct: 4   KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFM 44

>pdb|3TT3|A Chain A, Crystal Structure Of Leut In The Inward-Open Conformation In Complex With Fab Length = 519

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 63  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLM 103
           +R  W +R   +L+  G +VG+GN  RFP  A +NGGG  M
Sbjct: 4   KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFM 44

>pdb|3TT1|A Chain A, Crystal Structure Of Leut In The Outward-Open Conformation In Complex With Fab Length = 519

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 63  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLM 103
           +R  W +R   +L+  G +VG+GN  RFP  A +NGGG  M
Sbjct: 4   KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFM 44

>pdb|3QS6|A Chain A, Crystal Structure Of Leut Mutant F259v,I359q Bound To Sodium And L- Tryptophan Length = 519

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 63  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLM 103
           +R  W +R   +L+  G +VG+GN  RFP  A +NGGG  M
Sbjct: 4   KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFM 44

>pdb|3GJD|A Chain A, Crystal Structure Of Leut With Bound Og Length = 515

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 63  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLM 103
           +R  W +R   +L+  G +VG+GN  RFP  A +NGGG  M
Sbjct: 4   KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFM 44

>pdb|3GJC|A Chain A, Crystal Structure Of The E290s Mutant Of Leut With Bound Og Length = 513

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 63  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLM 103
           +R  W +R   +L+  G +VG+GN  RFP  A +NGGG  M
Sbjct: 4   KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFM 44

>pdb|3QS5|A Chain A, Crystal Structure Of Leut Mutant I359q Bound To Sodium And L- Tryptophan Length = 519

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 63  ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLM 103
           +R  W +R   +L+  G +VG+GN  RFP  A +NGGG  M
Sbjct: 4   KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFM 44

>pdb|3MPN|A Chain A, F177r1 Mutant Of Leut Length = 507

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 64  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLM 103
           R  W +R   +L+  G +VG+GN  RFP  A +NGGG  M
Sbjct: 1   REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFM 40

>pdb|2QJU|A Chain A, Crystal Structure Of An Nss Homolog With Bound Antidepressant Length = 511

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 64  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLM 103
           R  W +R   +L+  G +VG+GN  RFP  A +NGGG  M
Sbjct: 1   REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFM 40

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	108
2a65_A	519	Leutaa, Na(+):neurotransmitter symporter (SNF fami	3e-17

>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Length = 519

 Score = 74.3 bits (183), Expect = 3e-17
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 62  AERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGG-FL 102
            +R  W +R   +L+  G +VG+GN  RFP  A +NGGG F+
Sbjct: 3   VKREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFM 44

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	108
2a65_A	519	Leutaa, Na(+):neurotransmitter symporter (SNF fami	99.77

>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...

Probab=99.77  E-value=6.8e-21  Score=161.14  Aligned_cols=45  Identities=40%  Similarity=0.742  Sum_probs=43.1

Q ss_pred             cCCCCCchHHHHHHHhhhhccCCceeecceeeeeeCCeeEEEeec
Q psy205           63 ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLMRKQQ  107 (108)
Q Consensus        63 ~R~~Wssk~~fiLa~iG~aVGLGNiWRFPyL~~~nGGgaFlIPY~  107 (108)
                      +|++|+||++|||||+|+||||||||||||+|++||||||||||-
T Consensus         4 ~R~~W~sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYl   48 (519)
T 2a65_A            4 KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYI   48 (519)
T ss_dssp             -CCCCSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHH
T ss_pred             ccccCCcHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHH
Confidence            599999999999999999999999999999999999999999993

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	108
d2a65a1	509	f.54.1.1 (A:5-513) Na(+):neurotransmitter symporte	1e-19

>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Length = 509

class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

 Score = 79.9 bits (196), Expect = 1e-19
 Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 64  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGG-FLM 103
           R  W +R   +L+  G +VG+GN  RFP  A +NGGG F++
Sbjct: 1   REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMI 41

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	108
d2a65a1	509	Na(+):neurotransmitter symporter homologue LeuT {A	99.76

>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}

class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.76  E-value=5e-21  Score=155.41  Aligned_cols=44  Identities=41%  Similarity=0.750  Sum_probs=42.9

Q ss_pred             CCCCCchHHHHHHHhhhhccCCceeecceeeeeeCCeeEEEeec
Q psy205           64 RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLMRKQQ  107 (108)
Q Consensus        64 R~~Wssk~~fiLa~iG~aVGLGNiWRFPyL~~~nGGgaFlIPY~  107 (108)
                      |++|++|++|||||+|++||+||+|||||+|++||||+|||||.
T Consensus         1 R~~W~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~   44 (509)
T d2a65a1           1 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYI   44 (509)
T ss_dssp             CCCCSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHH
T ss_pred             CCCCCChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHH
Confidence            78999999999999999999999999999999999999999993