Psyllid ID: psy2142

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MSNTELIRLAHSIELCTWHLNPVTSTYYLSKASFGTKFDVAVITMIENMKRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLESGSIEIFVPLLGGKLLKTEMVEKQEKKKKKTGRAKRRVQYNRRFVNVVQTFGRRRGPNANS
Secondary Structure (PSIPRED)
cccHHHHHHcccccEEEEEEcccccEEEEEEEccccccEEEEEEEccccEEEEEEcccEEEEEEEccccHHHHHHHHHHHcccccccEEEEEccccccccccccccccccEEEEEEEcccccccccHHHHHHcccccccccEEEEEEEccEEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHcccccEEEHHcccccccccHHHHHHHHHHHHEEEEEcccEEEEEEcccHHHHHHHHHHHHHccccHHHEEEEEcccccccccEHHHccccEEEEEEEccccEEEccccccccccccccccccHHEEHEccEEEEEEccccccccccccc
Coil and Loop (DISEMBL)
MSNTELIRLAHSIELCtwhlnpvtstyylskasfgtkFDVAVITMIENMKRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLicsgktltddlsisdlesgsieIFVPLLGGKLLKTEMVEKQEKKKKKTGRAKRRVQYNRRFVNVVQtfgrrrgpnans
Flexible Loop (DISEMBL)
MSNTELIRLAHSIELCTWHLNPVTSTYYLSKASFGTKFDVAVITMIENMKRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLESGSIEIFVPLLGGKLLKTEMVEKqekkkkktgrakrrvqynrrfvnvvqtfgrrrgpnans
Low Complexity Region (SEG)
MSNTELIRLAHSIELCTWHLNPVTSTYYLSKASFGTKFDVAVITMIENMKRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLESGSIEIFVPLLGGKLLktemvekqekkkkkTGRAKRRVQYNRRFVNVVQTFGRRRGPNANS
Disordered region (IsUnstruct)
*****LIRLAHSIELCTWHLNPVTSTYYLSKASFGTKFDVAVITMIENMKRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLESGSIEIFVPLLGGKLLK********************************************
Disordered Region (DISOPRED)
******I*LAHSIELCTWHLNPVTSTYYLSKASFGTKFDVAVITMIENMKRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLESGSIEIFVPLL************************RRVQYNRRFVNVVQT***********
Disordered Region (DISEMBL)
MSNTELIRLAHSIELCTWHLNPVTSTYYLSKASFGTKFDVAVITMIENMKRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLESGSIEIFVPLLGGKLLKTEMV**************RRVQYNRRFVNVVQTFGRRRGPNANS
Disordered Region (DISPRO)
*SNTELIRLAHSIELCTWHLNPVTSTYYLSKASFGTKFDVAVITMIENMKRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLESGSIEIFVPLLGGKLLKTEMVEKQE******GRAKRRVQYNRRFVNVVQTF**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSNTELIRLAHSIELCTWHLNPVTSTYYLSKASFGTKFDVAVITMIENMKRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLESGSIEIFVPLLGGKLLKTEMVEKQEKKKKKTGRAKRRVQYNRRFVNVVQTFGRRRGPNANS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	168	2.2.26 [Sep-21-2011]
P62864	59	40S ribosomal protein S30	no	N/A	0.196	0.559	0.848	2e-08
P0C2F0	59	40S ribosomal protein S30	no	N/A	0.196	0.559	0.848	2e-08
P62863	59	40S ribosomal protein S30	no	N/A	0.196	0.559	0.848	2e-08
P62867	59	40S ribosomal protein S30	N/A	N/A	0.196	0.559	0.848	2e-08
P62862	59	40S ribosomal protein S30	no	N/A	0.196	0.559	0.848	2e-08
P62861	59	40S ribosomal protein S30	no	N/A	0.196	0.559	0.848	2e-08
P62860	59	40S ribosomal protein S30	no	N/A	0.196	0.559	0.848	2e-08
P62866	59	40S ribosomal protein S30	no	N/A	0.196	0.559	0.848	2e-08
Q9W6Y0	59	40S ribosomal protein S30	N/A	N/A	0.267	0.762	0.644	3e-08

>sp|P62864|RS30_RAT 40S ribosomal protein S30 OS=Rattus norvegicus GN=Fau PE=1 SV=1

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/33 (84%), Positives = 32/33 (96%)

Query: 136 KKTGRAKRRVQYNRRFVNVVQTFGRRRGPNANS 168
           KKTGRAKRR+QYNRRFVNVV TFG+++GPNANS
Sbjct: 27  KKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 59

Rattus norvegicus (taxid: 10116)

>sp|P0C2F0|RS30_PONAB 40S ribosomal protein S30 OS=Pongo abelii GN=FAU PE=3 SV=1

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/33 (84%), Positives = 32/33 (96%)

Query: 136 KKTGRAKRRVQYNRRFVNVVQTFGRRRGPNANS 168
           KKTGRAKRR+QYNRRFVNVV TFG+++GPNANS
Sbjct: 27  KKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 59

Pongo abelii (taxid: 9601)

>sp|P62863|RS30_PIG 40S ribosomal protein S30 OS=Sus scrofa GN=FAU PE=2 SV=1

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/33 (84%), Positives = 32/33 (96%)

Query: 136 KKTGRAKRRVQYNRRFVNVVQTFGRRRGPNANS 168
           KKTGRAKRR+QYNRRFVNVV TFG+++GPNANS
Sbjct: 27  KKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 59

Sus scrofa (taxid: 9823)

>sp|P62867|RS30_MUSSI 40S ribosomal protein S30 OS=Mus spicilegus GN=Fau PE=3 SV=1

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/33 (84%), Positives = 32/33 (96%)

Query: 136 KKTGRAKRRVQYNRRFVNVVQTFGRRRGPNANS 168
           KKTGRAKRR+QYNRRFVNVV TFG+++GPNANS
Sbjct: 27  KKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 59

Mus spicilegus (taxid: 10103)

>sp|P62862|RS30_MOUSE 40S ribosomal protein S30 OS=Mus musculus GN=Fau PE=3 SV=1

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/33 (84%), Positives = 32/33 (96%)

Query: 136 KKTGRAKRRVQYNRRFVNVVQTFGRRRGPNANS 168
           KKTGRAKRR+QYNRRFVNVV TFG+++GPNANS
Sbjct: 27  KKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 59

Mus musculus (taxid: 10090)

>sp|P62861|RS30_HUMAN 40S ribosomal protein S30 OS=Homo sapiens GN=FAU PE=1 SV=1

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/33 (84%), Positives = 32/33 (96%)

Query: 136 KKTGRAKRRVQYNRRFVNVVQTFGRRRGPNANS 168
           KKTGRAKRR+QYNRRFVNVV TFG+++GPNANS
Sbjct: 27  KKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 59

Homo sapiens (taxid: 9606)

>sp|P62860|RS30_CRIGR 40S ribosomal protein S30 OS=Cricetulus griseus GN=FAU PE=3 SV=1

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/33 (84%), Positives = 32/33 (96%)

Query: 136 KKTGRAKRRVQYNRRFVNVVQTFGRRRGPNANS 168
           KKTGRAKRR+QYNRRFVNVV TFG+++GPNANS
Sbjct: 27  KKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 59

Cricetulus griseus (taxid: 10029)

>sp|P62866|RS30_BOVIN 40S ribosomal protein S30 OS=Bos taurus GN=FAU PE=3 SV=1

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/33 (84%), Positives = 32/33 (96%)

Query: 136 KKTGRAKRRVQYNRRFVNVVQTFGRRRGPNANS 168
           KKTGRAKRR+QYNRRFVNVV TFG+++GPNANS
Sbjct: 27  KKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 59

Bos taurus (taxid: 9913)

>sp|Q9W6Y0|RS30_ORYLA 40S ribosomal protein S30 OS=Oryzias latipes GN=fau PE=3 SV=2

 Score = 58.2 bits (139), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/45 (64%), Positives = 39/45 (86%)

Query: 124 KTEMVEKQEKKKKKTGRAKRRVQYNRRFVNVVQTFGRRRGPNANS 168
           +T  V+K E+K+++ GRAKRR+QYNRRFVNVV TFG+++G NANS
Sbjct: 15  QTPNVDKHEEKEEEDGRAKRRIQYNRRFVNVVPTFGKKKGANANS 59

Oryzias latipes (taxid: 8090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
62083371	132	ribosomal protein S30 [Lysiphlebus testa	0.678	0.863	0.536	3e-32
156536989	129	PREDICTED: ubiquitin-like protein FUBI-l	0.666	0.868	0.547	7e-32
126213916	132	ribosomal protein S30 [Solenopsis invict	0.678	0.863	0.543	1e-30
307186262	135	40S ribosomal protein S30 [Camponotus fl	0.714	0.888	0.5	1e-29
66529866	132	PREDICTED: hypothetical protein LOC55210	0.684	0.871	0.531	2e-27
69608642	131	ubiquitin/ribosomal protein S30e fusion	0.684	0.877	0.523	3e-27
383861994	132	PREDICTED: uncharacterized protein LOC10	0.684	0.871	0.515	3e-27
69608627	130	ubiquitin/ribosomal protein S30e fusion	0.684	0.884	0.507	5e-27
340727236	140	PREDICTED: hypothetical protein LOC10064	0.684	0.821	0.5	7e-27
340727232	132	PREDICTED: hypothetical protein LOC10064	0.684	0.871	0.5	9e-27

>gi|62083371|gb|AAX62410.1| ribosomal protein S30 [Lysiphlebus testaceipes]

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 67/125 (53%), Positives = 91/125 (72%), Gaps = 11/125 (8%)

Query: 54  VRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLESGSIEI 113
           +RGQ  +V++CQ NET++ +K K++++E V   +F+L C+G  L+DD+ ++DL S S+++
Sbjct: 5   IRGQQTHVVDCQGNETIADIKAKLSAIENVESNEFTLHCAGAPLSDDICVADLASSSLDL 64

Query: 114 FVPLLGGKLL-----------KTEMVEKQEKKKKKTGRAKRRVQYNRRFVNVVQTFGRRR 162
            VPLLGGK+            +T  VEK EK KKKTGRAKRR+QYNRRFV VV TFGRRR
Sbjct: 65  TVPLLGGKVHGSLARAGKVKGQTPKVEKAEKSKKKTGRAKRRIQYNRRFVTVVPTFGRRR 124

Query: 163 GPNAN 167
           GPNAN
Sbjct: 125 GPNAN 129

Source: Lysiphlebus testaceipes

Species: Lysiphlebus testaceipes

Genus: Lysiphlebus

Family: Braconidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156536989|ref|XP_001608283.1| PREDICTED: ubiquitin-like protein FUBI-like [Nasonia vitripennis]

 Score =  141 bits (356), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 69/126 (54%), Positives = 92/126 (73%), Gaps = 14/126 (11%)

Query: 54  VRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLESGSIEI 113
           +RGQ  +V+ECQ +ETV+ +K ++A+ + V   +F L CSG  L+DD+ +S+L S ++++
Sbjct: 5   IRGQETHVIECQDDETVAQIKARLAAFQDV---EFHLYCSGTPLSDDVLVSELTSNTLDL 61

Query: 114 FVPLLGGKLL-----------KTEMVEKQEKKKKKTGRAKRRVQYNRRFVNVVQTFGRRR 162
            VPLLGGK+            +T  VEKQEK KKKTGRAKRR+QYNRRFVNVVQT+GRRR
Sbjct: 62  TVPLLGGKVHGSLARAGKVKGQTPKVEKQEKSKKKTGRAKRRIQYNRRFVNVVQTYGRRR 121

Query: 163 GPNANS 168
           GPNAN 
Sbjct: 122 GPNANP 127

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|126213916|gb|ABN80980.1| ribosomal protein S30 [Solenopsis invicta]

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/127 (54%), Positives = 92/127 (72%), Gaps = 13/127 (10%)

Query: 54  VRGQ-SNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLESGSIE 112
           +RG+    V+EC++NE + H+K ++A LE +  ++F L C+G  LTDD+ +++LES  +E
Sbjct: 5   IRGELQTTVVECEENEKLKHIKERIAGLENIE-DEFHLYCNGSLLTDDICVNELESEVLE 63

Query: 113 IFVPLLGGKL-----------LKTEMVEKQEKKKKKTGRAKRRVQYNRRFVNVVQTFGRR 161
           + VPL GGK+            +T  VEKQEK KKKTGRAKRR+QYNRRFVNVVQTFGRR
Sbjct: 64  LTVPLRGGKVHGSLARAGKVKAQTPKVEKQEKSKKKTGRAKRRIQYNRRFVNVVQTFGRR 123

Query: 162 RGPNANS 168
           RGPNAN+
Sbjct: 124 RGPNANT 130

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307186262|gb|EFN71925.1| 40S ribosomal protein S30 [Camponotus floridanus]

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/132 (50%), Positives = 90/132 (68%), Gaps = 12/132 (9%)

Query: 48  NMKRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE 107
           N  ++ +RGQ   +++C  N+ + H+K K+A L  +  E+F+L C+G  LTD+  + +L 
Sbjct: 3   NTMQLQIRGQETTIIDCIDNDRIQHIKKKIACLHGIE-EEFNLYCNGSLLTDEACVGELP 61

Query: 108 SGSIEIFVPLLGGKL-----------LKTEMVEKQEKKKKKTGRAKRRVQYNRRFVNVVQ 156
           S  +++ VPL GGK+            +T  VEKQEK KKKTGRAKRR+QYNRRFVNVVQ
Sbjct: 62  SNVLDLTVPLRGGKVHGSLARAGKVKAQTPKVEKQEKSKKKTGRAKRRIQYNRRFVNVVQ 121

Query: 157 TFGRRRGPNANS 168
           TFGRRRGPNAN+
Sbjct: 122 TFGRRRGPNANT 133

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66529866|ref|XP_624488.1| PREDICTED: hypothetical protein LOC552106 [Apis mellifera]

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 67/126 (53%), Positives = 84/126 (66%), Gaps = 11/126 (8%)

Query: 54  VRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLESGSIEI 113
           +RG+   V+E  +NET++ LK K+  L+  A  DF+L CSG  L +D  + DL S  +E+
Sbjct: 5   IRGERTTVVESHENETIADLKKKIVELKCAANIDFNLYCSGLLLQNDSLVGDLTSNVLEL 64

Query: 114 FVPLLGGKL-----------LKTEMVEKQEKKKKKTGRAKRRVQYNRRFVNVVQTFGRRR 162
            V L GGK+            +T  VEKQEK KKKTGRAKRR+QYNRRFVNVVQT+ RRR
Sbjct: 65  TVSLPGGKVHGSLARAGKVKAQTPKVEKQEKSKKKTGRAKRRIQYNRRFVNVVQTYSRRR 124

Query: 163 GPNANS 168
           GPNANS
Sbjct: 125 GPNANS 130

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|69608642|emb|CAJ01892.1| ubiquitin/ribosomal protein S30e fusion protein [Hister sp. APV-2005]

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 66/126 (52%), Positives = 85/126 (67%), Gaps = 11/126 (8%)

Query: 54  VRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLESGSIEI 113
           +RG S +VLECQ  ET++ LK K+A+LE++   + +L      + DD   S  E+  IE+
Sbjct: 5   IRGLSTHVLECQGTETIAELKEKIAALEELTPSEVNLYVGSIPIADDSLASAFENSDIEL 64

Query: 114 FVPLLGGKLL-----------KTEMVEKQEKKKKKTGRAKRRVQYNRRFVNVVQTFGRRR 162
            V LLGGK+            +T  V+KQEK+KKKTGRAKRR+QYNRRFVNVV TFGRRR
Sbjct: 65  NVGLLGGKVHGSLARAGKVKGQTPKVDKQEKEKKKTGRAKRRIQYNRRFVNVVATFGRRR 124

Query: 163 GPNANS 168
           GPN+NS
Sbjct: 125 GPNSNS 130

Source: Hister sp. APV-2005

Species: Hister sp. APV-2005

Genus: Hister

Family: Histeridae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383861994|ref|XP_003706469.1| PREDICTED: uncharacterized protein LOC100881064 [Megachile rotundata]

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 65/126 (51%), Positives = 84/126 (66%), Gaps = 11/126 (8%)

Query: 54  VRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLESGSIEI 113
           +RG    V+E  +NET++ LK K+  L+  A  +F+L CSG  L ++  + +L S  +E+
Sbjct: 5   IRGDHTTVVESHENETIAELKKKIVELDAAANTEFNLYCSGFLLQNEALVGELTSNVLEL 64

Query: 114 FVPLLGGKL-----------LKTEMVEKQEKKKKKTGRAKRRVQYNRRFVNVVQTFGRRR 162
            V L GGK+            +T  VEKQEK KKKTGRAKRR+QYNRRFVNVVQ+FGRRR
Sbjct: 65  TVSLPGGKVHGSLARAGKVKAQTPKVEKQEKSKKKTGRAKRRIQYNRRFVNVVQSFGRRR 124

Query: 163 GPNANS 168
           GPNANS
Sbjct: 125 GPNANS 130

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|69608627|emb|CAJ01889.1| ubiquitin/ribosomal protein S30e fusion protein [Carabus granulatus]

 Score =  125 bits (315), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 64/126 (50%), Positives = 86/126 (68%), Gaps = 11/126 (8%)

Query: 54  VRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLESGSIEI 113
           +RGQ+ +VLECQ  E +S +K ++A+LE +  EDF L  +G  ++DD  +S+  + S+E+
Sbjct: 5   IRGQNQHVLECQGEELISQIKARIAALENIGSEDFCLYAAGAPVSDDSPVSEFAATSLEL 64

Query: 114 FVPLLGGK----LLKTEMVEKQEKKKKK-------TGRAKRRVQYNRRFVNVVQTFGRRR 162
            VPLLGGK    L +   V+ Q  K +K       TGRAKRR+QYNRRFVNVV TFGRRR
Sbjct: 65  TVPLLGGKVHGSLARAGKVKGQTPKVEKQEKKKKKTGRAKRRIQYNRRFVNVVATFGRRR 124

Query: 163 GPNANS 168
           GPN+NS
Sbjct: 125 GPNSNS 130

Source: Carabus granulatus

Species: Carabus granulatus

Genus: Carabus

Family: Carabidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340727236|ref|XP_003401954.1| PREDICTED: hypothetical protein LOC100642544 [Bombus terrestris]

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 63/126 (50%), Positives = 83/126 (65%), Gaps = 11/126 (8%)

Query: 54  VRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLESGSIEI 113
           +RG+   ++E  +NET++ +K K+   E     +F+L CSG  L +D S+ DL S  +E+
Sbjct: 13  IRGEHTTLVESHENETIADIKRKIVEAEGAVNTEFNLYCSGVLLENDASVGDLTSNILEL 72

Query: 114 FVPLLGGKL-----------LKTEMVEKQEKKKKKTGRAKRRVQYNRRFVNVVQTFGRRR 162
            V L GGK+            +T  VEKQEK KKKTGRAKRR+QYNRRFVNVVQT+ RRR
Sbjct: 73  TVSLPGGKVHGSLARAGKVKAQTPKVEKQEKSKKKTGRAKRRIQYNRRFVNVVQTYSRRR 132

Query: 163 GPNANS 168
           GPNAN+
Sbjct: 133 GPNANT 138

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340727232|ref|XP_003401952.1| PREDICTED: hypothetical protein LOC100642544 [Bombus terrestris] gi|340727234|ref|XP_003401953.1| PREDICTED: hypothetical protein LOC100642544 [Bombus terrestris]

 Score =  125 bits (313), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 63/126 (50%), Positives = 83/126 (65%), Gaps = 11/126 (8%)

Query: 54  VRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLESGSIEI 113
           +RG+   ++E  +NET++ +K K+   E     +F+L CSG  L +D S+ DL S  +E+
Sbjct: 5   IRGEHTTLVESHENETIADIKRKIVEAEGAVNTEFNLYCSGVLLENDASVGDLTSNILEL 64

Query: 114 FVPLLGGKL-----------LKTEMVEKQEKKKKKTGRAKRRVQYNRRFVNVVQTFGRRR 162
            V L GGK+            +T  VEKQEK KKKTGRAKRR+QYNRRFVNVVQT+ RRR
Sbjct: 65  TVSLPGGKVHGSLARAGKVKAQTPKVEKQEKSKKKTGRAKRRIQYNRRFVNVVQTYSRRR 124

Query: 163 GPNANS 168
           GPNAN+
Sbjct: 125 GPNANT 130

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
FB|FBgn0038834	147	RpS30 "Ribosomal protein S30"	0.702	0.802	0.407	2.5e-19
ZFIN|ZDB-GENE-040426-1700	136	faua "Finkel-Biskis-Reilly mur	0.702	0.867	0.424	1.2e-17
ZFIN|ZDB-GENE-050417-416	133	faub "Finkel-Biskis-Reilly mur	0.702	0.887	0.409	1.6e-17
UNIPROTKB|F1RQU9	133	FAU "Ubiquitin-like protein FU	0.702	0.887	0.409	5.3e-17
UNIPROTKB|E1BH19	130	FAU "Ubiquitin-like protein FU	0.702	0.907	0.403	6.7e-17
UNIPROTKB|E2RC86	133	FAU "Uncharacterized protein"	0.702	0.887	0.401	8.6e-17
RGD|2321710	133	LOC100360647 "ubiquitin-like p	0.702	0.887	0.378	4.2e-15
RGD|1565317	130	RGD1565317 "similar to ubiquit	0.702	0.907	0.364	3.8e-14
UNIPROTKB|E9PR30	98	FAU "40S ribosomal protein S30	0.184	0.316	0.838	6.8e-13
UNIPROTKB|H7BWV9	133	H7BWV9 "Uncharacterized protei	0.184	0.233	0.838	5.2e-10

FB|FBgn0038834 RpS30 "Ribosomal protein S30" [Drosophila melanogaster (taxid:7227)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 53/130 (40%), Positives = 76/130 (58%)

Query:    51 RIIVRG-QSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLESG 109
             ++ VRG ++   LE  Q+ T++ +KN++A +     E+FSL C G TL ++  ++ L S 
Sbjct:    17 QLFVRGLETIEALEVSQDATIAGVKNQLAQIHGFNAEEFSLDCEGITLANETPVTALSSF 76

Query:   110 SIEIFVPLLGGKLLXXXXXXXXXXXXX-----------XTGRAKRRVQYNRRFVNVVQTF 158
              +++ +P+LGGK+                          TGRAKRR+QYNRRFVN VQ F
Sbjct:    77 ELDLNIPMLGGKVHGSLARAGKVKGQTPKVEKQEKKKKKTGRAKRRIQYNRRFVNFVQGF 136

Query:   159 GRRRGPNANS 168
             GRRRGPNANS
Sbjct:   137 GRRRGPNANS 146

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0006412 "translation" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0000022 "mitotic spindle elongation" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

ZFIN|ZDB-GENE-040426-1700 faua "Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a" [Danio rerio (taxid:7955)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 56/132 (42%), Positives = 73/132 (55%)

Query:    51 RIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDD---LSISDLE 107
             ++ +R QS + LE   NETV  +K  V +LE V +ED  L+ SG  L DD   L+    E
Sbjct:     5 QLFLRAQSLHTLEVSGNETVRDIKAHVEALEGVCVEDQLLLLSGAPLQDDSTLLNCGITE 64

Query:   108 SGSIEIFVPLLGGKLLXXXXXXXXXXXXX-----------XTGRAKRRVQYNRRFVNVVQ 156
               ++E+   LLGGK+                          TGRAKRR+QYNRRFVNVV 
Sbjct:    65 FCTLEVSGRLLGGKVHGSLARAGKVRGQTPKVDKQEKKKKKTGRAKRRIQYNRRFVNVVP 124

Query:   157 TFGRRRGPNANS 168
             TFG+++GPNANS
Sbjct:   125 TFGKKKGPNANS 136

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

ZFIN|ZDB-GENE-050417-416 faub "Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed b" [Danio rerio (taxid:7955)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 54/132 (40%), Positives = 76/132 (57%)

Query:    51 RIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSI--SDLES 108
             ++ VRGQS + +    +ETV+H+K ++ +LE +A +D  +  SG  L DD  I  S +E 
Sbjct:     2 QLFVRGQSLHSVHLNGSETVAHIKAQIEALEGLACDDRIISLSGIPLEDDALICQSGIEE 61

Query:   109 -GSIEIFVPLLGGKLLXXXXXXXXXXXXX-----------XTGRAKRRVQYNRRFVNVVQ 156
               ++E+   LLGGK+                          TGRAKRR+QYNRRFVNVV 
Sbjct:    62 FNTLEVSSRLLGGKVHGSLARAGKVRGQTPKVDKQEKRKKRTGRAKRRIQYNRRFVNVVP 121

Query:   157 TFGRRRGPNANS 168
             TFG+++GPNANS
Sbjct:   122 TFGKKKGPNANS 133

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|F1RQU9 FAU "Ubiquitin-like protein FUBI" [Sus scrofa (taxid:9823)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 54/132 (40%), Positives = 74/132 (56%)

Query:    51 RIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD--LES 108
             ++ VR Q  + LE    ETV+ +K  VASLE +A ED  L+ +G  L DD  +    +E+
Sbjct:     2 QLFVRAQELHTLEVTGQETVAQIKAHVASLEGIAPEDQVLLLAGTPLEDDAILGQCGVEA 61

Query:   109 -GSIEIFVPLLGGKLLXXXXXXXXXXXXX-----------XTGRAKRRVQYNRRFVNVVQ 156
               ++E+   +LGGK+                          TGRAKRR+QYNRRFVNVV 
Sbjct:    62 LSTLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVP 121

Query:   157 TFGRRRGPNANS 168
             TFG+++GPNANS
Sbjct:   122 TFGKKKGPNANS 133

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|E1BH19 FAU "Ubiquitin-like protein FUBI" [Bos taurus (taxid:9913)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 52/129 (40%), Positives = 74/129 (57%)

Query:    51 RIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD--LES 108
             ++ VR Q  + LE    ETV+ +K  VASLE +A ED  L+ +G  L D+ ++    +E+
Sbjct:     2 QLFVRAQELHTLEVTGQETVAQIKAHVASLEGIAPEDQVLLLAGSPLEDEATLGQCGVEA 61

Query:   109 -GSIEIFVPLLGGKLLXXXXXXXXXXXXX--------XTGRAKRRVQYNRRFVNVVQTFG 159
               ++E+   +L GK+                       TGRAKRR+QYNRRFVNVV TFG
Sbjct:    62 LSTVEVAGRMLRGKVHGSLAHAGKVRGQTPKVAKQEKKTGRAKRRMQYNRRFVNVVPTFG 121

Query:   160 RRRGPNANS 168
             +++GPNANS
Sbjct:   122 KKKGPNANS 130

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|E2RC86 FAU "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
 Identities = 53/132 (40%), Positives = 75/132 (56%)

Query:    51 RIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD--LES 108
             ++ VR Q  + LE    ETV+ +K  VASLE +A ED  L+ +G  L D+ ++    +E+
Sbjct:     2 QLFVRAQELHTLEVTGQETVAQIKAHVASLEGIAPEDQVLLLAGSPLEDEATLGQCGVEA 61

Query:   109 -GSIEIFVPLLGGKLLXXXXXXXXXXXXX-----------XTGRAKRRVQYNRRFVNVVQ 156
               ++E+   +LGGK+                          TGRAKRR+QYNRRFVNVV 
Sbjct:    62 LTTLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVP 121

Query:   157 TFGRRRGPNANS 168
             TFG+++GPNANS
Sbjct:   122 TFGKKKGPNANS 133

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

RGD|2321710 LOC100360647 "ubiquitin-like protein fubi and ribosomal protein S30-like" [Rattus norvegicus (taxid:10116)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 50/132 (37%), Positives = 74/132 (56%)

Query:    51 RIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD--LES 108
             ++ VR Q  + LE    ETV+ +K  VASLE +A ED  ++ +G  L D+ ++    +E+
Sbjct:     2 QLFVRAQELHTLEVTSQETVTQIKAHVASLEGIAPEDQVVLLAGSPLEDEATLGQCGVEA 61

Query:   109 -GSIEIFVPLLGGKLLXXXXXXXXXXXXX-----------XTGRAKRRVQYNRRFVNVVQ 156
               ++EI   +LGGK+                          TGRAKR++QYN+ FVNVV 
Sbjct:    62 LTTLEIAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRQMQYNQCFVNVVP 121

Query:   157 TFGRRRGPNANS 168
             TFG+++GPNANS
Sbjct:   122 TFGKKKGPNANS 133

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

RGD|1565317 RGD1565317 "similar to ubiquitin-like/S30 ribosomal fusion protein" [Rattus norvegicus (taxid:10116)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 47/129 (36%), Positives = 69/129 (53%)

Query:    51 RIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLESGS 110
             ++ VR Q  + LE    ETV+ +K  VAS+E +A ED  ++   + L D+ ++    + +
Sbjct:     2 QLFVRAQELHTLEVTGQETVAQIKAHVASMEGIAPEDQVVLWQARPLEDEATLGQCGAEA 61

Query:   111 I---EIFVPLLGGKLLXXXXXXXXXXXXX--------XTGRAKRRVQYNRRFVNVVQTFG 159
             +   E+   +LGGK+                       TG AKRR+Q NRRFVNVV TFG
Sbjct:    62 LTTLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKKTGGAKRRMQSNRRFVNVVPTFG 121

Query:   160 RRRGPNANS 168
              ++GPNANS
Sbjct:   122 EKKGPNANS 130

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|E9PR30 FAU "40S ribosomal protein S30" [Homo sapiens (taxid:9606)]

 Score = 143 (55.4 bits), Expect = 6.8e-13, Sum P(2) = 6.8e-13
 Identities = 26/31 (83%), Positives = 30/31 (96%)

Query:   138 TGRAKRRVQYNRRFVNVVQTFGRRRGPNANS 168
             TGRAKRR+QYNRRFVNVV TFG+++GPNANS
Sbjct:    68 TGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 98

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|H7BWV9 H7BWV9 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 26/31 (83%), Positives = 30/31 (96%)

Query:   138 TGRAKRRVQYNRRFVNVVQTFGRRRGPNANS 168
             TGRAKRR+QYNRRFVNVV TFG+++GPNANS
Sbjct:   103 TGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 133

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	168
pfam04758	53	pfam04758, Ribosomal_S30, Ribosomal protein S30	1e-14
cd01793	74	cd01793, Fubi, Fubi ubiquitin-like protein	2e-13
pfam00240	69	pfam00240, ubiquitin, Ubiquitin family	2e-06
smart00213	72	smart00213, UBQ, Ubiquitin homologues	2e-06
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	7e-06

>gnl|CDD|218248 pfam04758, Ribosomal_S30, Ribosomal protein S30

 Score = 63.9 bits (156), Expect = 1e-14
 Identities = 29/38 (76%), Positives = 33/38 (86%)

Query: 125 TEMVEKQEKKKKKTGRAKRRVQYNRRFVNVVQTFGRRR 162
           T  VEKQEKKKK TGRAK+R+QYNRRFVNVV  FG++R
Sbjct: 16  TPKVEKQEKKKKPTGRAKKRLQYNRRFVNVVPGFGKKR 53

Length = 53

>gnl|CDD|176388 cd01793, Fubi, Fubi ubiquitin-like protein

 Score = 61.7 bits (150), Expect = 2e-13
 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 3/70 (4%)

Query: 54  VRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSIS---DLESGS 110
           VR Q+ + LE    ETVS +K  VA LE + +ED  L+ +G  L DD ++      E  +
Sbjct: 5   VRAQNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCT 64

Query: 111 IEIFVPLLGG 120
           +E+   LLGG
Sbjct: 65  LEVAGRLLGG 74

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8. Length = 74

>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family

 Score = 43.0 bits (102), Expect = 2e-06
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 54  VRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD--LESGSI 111
                   LE   ++TVS LK K+   E + ++   LI SGK L DD ++S+  ++ GS 
Sbjct: 2   TLDGKTITLEVDPSDTVSELKEKIEDKEGIPVDQQRLIFSGKVLEDDTTLSEYGIQDGST 61

This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites. Length = 69

>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues

 Score = 43.0 bits (102), Expect = 2e-06
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 51  RIIVR--GQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDL 106
            + V+        LE + ++TVS LK K+A L  +  E   LI  GK L DD +++D 
Sbjct: 2   ELTVKTLDGKTITLEVKPSDTVSELKEKIAELTGIPPEQQRLIYKGKVLEDDRTLADY 59

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression. Length = 72

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 41.5 bits (98), Expect = 7e-06
 Identities = 20/51 (39%), Positives = 29/51 (56%)

Query: 55  RGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD 105
                + LE   ++TV+ LK K+A+ E V  E   LI +GK L DD ++SD
Sbjct: 5   LTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSD 55

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	168
cd01793	74	Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui	99.88
KOG0009|consensus	62		99.84
cd01802	103	AN1_N ubiquitin-like domain of AN1. AN1 (also know	99.83
PTZ00044	76	ubiquitin; Provisional	99.81
cd01807	74	GDX_N ubiquitin-like domain of GDX. GDX contains a	99.78
cd01810	74	ISG15_repeat2 ISG15 ubiquitin-like protein, second	99.78
cd01803	76	Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40	99.78
KOG0004|consensus	156		99.76
cd01806	76	Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn	99.76
cd01797	78	NIRF_N amino-terminal ubiquitin-like domain of Np9	99.75
cd01804	78	midnolin_N Ubiquitin-like domain of midnolin. midn	99.73
cd01798	70	parkin_N amino-terminal ubiquitin-like of parkin p	99.71
KOG0003|consensus	128		99.7
cd01794	70	DC_UbP_C dendritic cell derived ubiquitin-like pro	99.69
PF04758	59	Ribosomal_S30: Ribosomal protein S30; InterPro: IP	99.69
cd01805	77	RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo	99.69
cd01791	73	Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know	99.69
cd01808	71	hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC	99.68
cd01809	72	Scythe_N Ubiquitin-like domain of Scythe protein.	99.67
cd01792	80	ISG15_repeat1 ISG15 ubiquitin-like protein, first	99.64
cd01800	76	SF3a120_C Ubiquitin-like domain of Mammalian splic	99.63
cd01790	79	Herp_N Homocysteine-responsive endoplasmic reticul	99.61
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	99.6
cd01796	71	DDI1_N DNA damage inducible protein 1 ubiquitin-li	99.59
PTZ00467	66	40S ribosomal protein S30; Provisional	99.58
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	99.56
cd01812	71	BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter	99.54
KOG0005|consensus	70		99.5
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	99.49
cd01813	74	UBP_N UBP ubiquitin processing protease. The UBP (	99.45
cd01814	113	NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT	99.42
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	99.42
cd01815	75	BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC	99.37
cd01799	75	Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO	99.31
KOG0010|consensus	493		99.27
cd01769	69	UBL Ubiquitin-like domain of UBL. UBLs function by	99.17
KOG0011|consensus	340		99.16
PRK09336	50	30S ribosomal protein S30e; Provisional	99.16
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	99.07
cd01795	107	USP48_C USP ubiquitin-specific protease. The USP (	99.05
KOG0001|consensus	75		99.02
cd01789	84	Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol	98.76
PF13881	111	Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB	98.55
PLN02560	308	enoyl-CoA reductase	98.53
cd01788	119	ElonginB Ubiquitin-like domain of Elongin B. Elong	98.52
KOG4248|consensus	1143		98.49
PF14560	87	Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K	98.4
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	98.23
KOG0006|consensus	446		98.22
cd01801	77	Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-	98.18
PF11543	80	UN_NPL4: Nuclear pore localisation protein NPL4; I	97.97
PF13019	162	Telomere_Sde2: Telomere stability and silencing	97.92
KOG4495|consensus	110		97.57
PF10302	97	DUF2407: DUF2407 ubiquitin-like domain; InterPro:	97.51
KOG1769|consensus	99		97.45
cd01811	80	OASL_repeat1 2'-5' oligoadenylate synthetase-like	97.2
KOG1872|consensus	473		96.67
KOG3493|consensus	73		96.03
PRK08364	70	sulfur carrier protein ThiS; Provisional	95.73
PF00789	82	UBX: UBX domain; InterPro: IPR001012 The UBX domai	95.72
PF11470	65	TUG-UBL1: GLUT4 regulating protein TUG; InterPro:	95.47
PF12754	309	Blt1: Cell-cycle control medial ring component; In	95.44
PRK06437	67	hypothetical protein; Provisional	94.9
PLN02799	82	Molybdopterin synthase sulfur carrier subunit	94.89
smart00166	80	UBX Domain present in ubiquitin-regulatory protein	94.85
cd01770	79	p47_UBX p47-like ubiquitin domain. p47_UBX p47 is	94.76
PF15044	76	CLU_N: Mitochondrial function, CLU-N-term	94.31
KOG4583|consensus	391		94.22
KOG1639|consensus	297		93.95
COG5227	103	SMT3 Ubiquitin-like protein (sentrin) [Posttransla	93.8
cd01767	77	UBX UBX (ubiquitin regulatory X) domain. The UBX (	93.71
cd06406	80	PB1_P67 A PB1 domain is present in p67 proteins wh	93.39
PF08817	79	YukD: WXG100 protein secretion system (Wss), prote	93.06
KOG0013|consensus	231		92.89
PF14453	57	ThiS-like: ThiS-like ubiquitin	92.6
PRK05659	66	sulfur carrier protein ThiS; Validated	92.31
cd01772	79	SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-subst	92.26
cd00754	80	MoaD Ubiquitin domain of MoaD-like proteins. MoaD	91.71
cd01774	85	Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i	91.15
cd00565	65	ThiS ThiaminS ubiquitin-like sulfur carrier protei	90.91
cd01760	72	RBD Ubiquitin-like domain of RBD-like S/T kinases.	90.87
PRK06944	65	sulfur carrier protein ThiS; Provisional	89.59
PRK06488	65	sulfur carrier protein ThiS; Validated	88.91
PRK07440	70	hypothetical protein; Provisional	88.64
PRK08053	66	sulfur carrier protein ThiS; Provisional	88.42
TIGR01682	80	moaD molybdopterin converting factor, subunit 1, n	87.83
PRK05863	65	sulfur carrier protein ThiS; Provisional	86.99
cd01773	82	Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 i	86.75
smart00455	70	RBD Raf-like Ras-binding domain.	86.67
TIGR01683	64	thiS thiamine biosynthesis protein ThiS. This mode	85.61
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	85.3
cd01771	80	Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac	84.89
cd01817	73	RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS	84.47
KOG4250|consensus	732		81.54
PF02597	77	ThiS: ThiS family; InterPro: IPR003749 ThiS (thiam	81.3
PF02196	71	RBD: Raf-like Ras-binding domain; InterPro: IPR003	81.21
KOG3206|consensus	234		80.1

>cd01793 Fubi Fubi ubiquitin-like protein

Probab=99.88  E-value=6.3e-23  Score=143.05  Aligned_cols=71  Identities=37%  Similarity=0.520  Sum_probs=69.3

Q ss_pred             eEEEEEcCCceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142          50 KRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG  120 (168)
Q Consensus        50 MQIfVR~~~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG  120 (168)
                      ||||||+.++++++|++++||++||++|++.+|||+++|+|+|+|++|+|+.+|++|+   ++|||++++++||
T Consensus         1 mqi~vk~~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~GG   74 (74)
T cd01793           1 MQLFVRAQNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLGG   74 (74)
T ss_pred             CEEEEECCCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence            8999999888999999999999999999999999999999999999999999999999   7999999999998

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.

>KOG0009|consensus

Probab=99.84  E-value=9.1e-22  Score=133.44  Aligned_cols=51  Identities=69%  Similarity=0.957  Sum_probs=48.1

Q ss_pred             cCCccc-cchhHHHhhhhhhccchhhhhceecceeeEeeecCCccCCCCCCC
Q psy2142         118 LGGKLL-KTEMVEKQEKKKKKTGRAKRRVQYNRRFVNVVQTFGRRRGPNANS  168 (168)
Q Consensus       118 lGGKv~-~~~k~~k~~k~k~~~~r~k~~~~y~~~~~~~~~~~~~~~~~~~~~  168 (168)
                      ..|||. |||||+||||+|+|+|||++|+|||+||+||+.+||+|++||+++
T Consensus        10 rAGKVr~QTPKv~kqeK~kkk~GRa~~Rlqy~rR~vn~~~~~g~Kr~~N~~s   61 (62)
T KOG0009|consen   10 RAGKVRGQTPKVEKQEKKKKKRGRAKKRLQYNRRFVNVVFGVGGKRGPNPNS   61 (62)
T ss_pred             hcccccccCCcchhhhhcccccchHHHHhhhheeeEEeeeccccccCCCCCC
Confidence            457777 999999999999999999999999999999999999999999986

>cd01802 AN1_N ubiquitin-like domain of AN1

Probab=99.83  E-value=1.8e-20  Score=139.82  Aligned_cols=77  Identities=19%  Similarity=0.366  Sum_probs=72.5

Q ss_pred             EeeCCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEec
Q psy2142          44 TMIENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLL  118 (168)
Q Consensus        44 ~~~~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvrll  118 (168)
                      +.....|||+||+.++  ++++|++++||++||++|++.+|||+++|+|+|+|++|+|+.+|++|+   ++|||++++++
T Consensus        22 ~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL~l~~~l~  101 (103)
T cd01802          22 LPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNISEGCTLKLVLAMR  101 (103)
T ss_pred             eccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEecC
Confidence            3457789999999876  889999999999999999999999999999999999999999999999   89999999999


Q ss_pred             CC
Q psy2142         119 GG  120 (168)
Q Consensus       119 GG  120 (168)
                      ||
T Consensus       102 GG  103 (103)
T cd01802         102 GG  103 (103)
T ss_pred             CC
Confidence            98

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.

>PTZ00044 ubiquitin; Provisional

Probab=99.81  E-value=5.3e-20  Score=127.73  Aligned_cols=71  Identities=27%  Similarity=0.514  Sum_probs=68.4

Q ss_pred             eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142          50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG  120 (168)
Q Consensus        50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG  120 (168)
                      ||||||+.+|  +++++++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+   ++++|++++++||
T Consensus         1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~gg   76 (76)
T PTZ00044          1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRGG   76 (76)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccCC
Confidence            8999999875  889999999999999999999999999999999999999999999999   8999999999997

>cd01807 GDX_N ubiquitin-like domain of GDX

Probab=99.78  E-value=3.4e-19  Score=124.00  Aligned_cols=68  Identities=28%  Similarity=0.351  Sum_probs=64.6

Q ss_pred             eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEe
Q psy2142          50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPL  117 (168)
Q Consensus        50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvrl  117 (168)
                      |+|+||+.+|  ++++|++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+   ++++++++++
T Consensus         1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~   73 (74)
T cd01807           1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP   73 (74)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence            8999999865  789999999999999999999999999999999999999999999999   8999999874

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.

>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2

Probab=99.78  E-value=3.8e-19  Score=123.92  Aligned_cols=69  Identities=28%  Similarity=0.475  Sum_probs=65.9

Q ss_pred             EEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142          52 IIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG  120 (168)
Q Consensus        52 IfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG  120 (168)
                      ||||++.+  ++++|++++||++||++|++.+|||+++|+|+|+|++|+|+.+|++|+   ++|++++++++||
T Consensus         1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~gg   74 (74)
T cd01810           1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRGG   74 (74)
T ss_pred             CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccCC
Confidence            68999865  789999999999999999999999999999999999999999999999   7999999999997

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01803 Ubiquitin Ubiquitin

Probab=99.78  E-value=7.2e-19  Score=121.03  Aligned_cols=71  Identities=27%  Similarity=0.488  Sum_probs=68.2

Q ss_pred             eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142          50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG  120 (168)
Q Consensus        50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG  120 (168)
                      |+|+||+.++  +.++|++++||++||++|++..|+|+++|+|+|+|++|+|+.+|++|+   +++++++++++||
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg   76 (76)
T cd01803           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   76 (76)
T ss_pred             CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccCC
Confidence            8999999875  789999999999999999999999999999999999999999999998   7999999999998

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)

>KOG0004|consensus

Probab=99.76  E-value=2.3e-19  Score=142.67  Aligned_cols=102  Identities=25%  Similarity=0.378  Sum_probs=87.5

Q ss_pred             eEEEEEcCC--ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCccc-
Q psy2142          50 KRIIVRGQS--NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGKLL-  123 (168)
Q Consensus        50 MQIfVR~~~--~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGKv~-  123 (168)
                      |+|||+...  +.+++|++++||..+|++|++.+|||+++|+|||+|++|+|..+|+||+   .+||+|+++++||... 
T Consensus         1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg~kkr   80 (156)
T KOG0004|consen    1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKR   80 (156)
T ss_pred             CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCCcccc
Confidence            899999986  5888999999999999999999999999999999999999999999999   7999999999999532 


Q ss_pred             -----cchhHHHhhhhhhccchhhhhceecceeeEeeecCCc
Q psy2142         124 -----KTEMVEKQEKKKKKTGRAKRRVQYNRRFVNVVQTFGR  160 (168)
Q Consensus       124 -----~~~k~~k~~k~k~~~~r~k~~~~y~~~~~~~~~~~~~  160 (168)
                           ++||.-++..+|.        ......|+.|+. +|+
T Consensus        81 kkk~~~~pk~~~~~~kk~--------~l~~~~y~kvd~-ngk  113 (156)
T KOG0004|consen   81 KKKSYTTPKKIKSKHKKV--------SLAVLKYYKVDE-NGK  113 (156)
T ss_pred             cccccccccccCCCcccc--------ccCCccceeecc-Ccc
Confidence                 7777766644443        367777888875 464

>cd01806 Nedd8 Nebb8-like ubiquitin protein

Probab=99.76  E-value=3.7e-18  Score=117.46  Aligned_cols=71  Identities=24%  Similarity=0.422  Sum_probs=67.9

Q ss_pred             eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142          50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG  120 (168)
Q Consensus        50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG  120 (168)
                      |+|+||+.++  +.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|+   +++||++++++||
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~gg   76 (76)
T cd01806           1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRGG   76 (76)
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccCC
Confidence            8999999865  778999999999999999999999999999999999999999999998   8999999999997

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.

>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF

Probab=99.75  E-value=3.3e-18  Score=121.49  Aligned_cols=68  Identities=24%  Similarity=0.300  Sum_probs=63.5

Q ss_pred             eEEEEEcCCc---eEEE-EcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEe
Q psy2142          50 KRIIVRGQSN---YVLE-CQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPL  117 (168)
Q Consensus        50 MQIfVR~~~~---~tle-V~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvrl  117 (168)
                      ||||||+.+|   ++++ +++++||++||++|++.+|||+++|+|+|+|++|+|+.+|++|+   +++|++++++
T Consensus         1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~   75 (78)
T cd01797           1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQ   75 (78)
T ss_pred             CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEec
Confidence            8999999976   3674 89999999999999999999999999999999999999999999   8999999876

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.

>cd01804 midnolin_N Ubiquitin-like domain of midnolin

Probab=99.73  E-value=8.9e-18  Score=118.79  Aligned_cols=72  Identities=19%  Similarity=0.328  Sum_probs=67.8

Q ss_pred             ceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCc
Q psy2142          49 MKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGK  121 (168)
Q Consensus        49 ~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGK  121 (168)
                      .|+|+||+..+  ++++|+++.||++||++|++..|+|+++|+|+|+|++|+|+ +|++||   +++|+++..+.||-
T Consensus         1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~~   77 (78)
T cd01804           1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAGL   77 (78)
T ss_pred             CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeeccccC
Confidence            49999999865  88999999999999999999999999999999999999999 999999   79999999999984

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.

>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein

Probab=99.71  E-value=1.9e-17  Score=113.95  Aligned_cols=65  Identities=20%  Similarity=0.380  Sum_probs=60.9

Q ss_pred             EEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEE
Q psy2142          52 IIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVP  116 (168)
Q Consensus        52 IfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvr  116 (168)
                      ||||+..+  ++++|++++||++||++|++.+|+|+++|+|+|+|++|+|+.+|++|+   ++|+|++.|
T Consensus         1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~   70 (70)
T cd01798           1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR   70 (70)
T ss_pred             CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence            68999865  789999999999999999999999999999999999999999999998   899999864

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.

>KOG0003|consensus

Probab=99.70  E-value=2.3e-18  Score=130.63  Aligned_cols=74  Identities=24%  Similarity=0.456  Sum_probs=69.2

Q ss_pred             eEEEEEcCC--ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCccc
Q psy2142          50 KRIIVRGQS--NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGKLL  123 (168)
Q Consensus        50 MQIfVR~~~--~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGKv~  123 (168)
                      ||+|++++.  +.+++|+|++||..||++|...+|||+++|+|+|+|++|+|..||++|+   .+|||++.+++||...
T Consensus         1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG~i~   79 (128)
T KOG0003|consen    1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIE   79 (128)
T ss_pred             CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcCCCC
Confidence            688888874  4889999999999999999999999999999999999999999999999   8999999999999644

>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein

Probab=99.69  E-value=4e-17  Score=113.77  Aligned_cols=63  Identities=25%  Similarity=0.296  Sum_probs=58.5

Q ss_pred             EEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEE
Q psy2142          53 IVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFV  115 (168)
Q Consensus        53 fVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvv  115 (168)
                      .||..+|  ++++|++++||++||++|++.+|+|+++|+|+|+|++|+|+.+|++|+   ++|+||++
T Consensus         2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~   69 (70)
T cd01794           2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV   69 (70)
T ss_pred             eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence            4677654  889999999999999999999999999999999999999999999998   79999876

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.

>PF04758 Ribosomal_S30: Ribosomal protein S30; InterPro: IPR006846 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.69  E-value=7.7e-19  Score=119.55  Aligned_cols=51  Identities=73%  Similarity=1.068  Sum_probs=44.7

Q ss_pred             cCCccc-cchhHHHhhhhhhccchhhhhceecceeeEeeecCCccCCCCCCC
Q psy2142         118 LGGKLL-KTEMVEKQEKKKKKTGRAKRRVQYNRRFVNVVQTFGRRRGPNANS  168 (168)
Q Consensus       118 lGGKv~-~~~k~~k~~k~k~~~~r~k~~~~y~~~~~~~~~~~~~~~~~~~~~  168 (168)
                      ..|+|. |||||+|+||+|.++|||++|++||+||+++++++|+|++||++|
T Consensus         8 rAGKVR~QTPKV~k~~k~k~~~gRak~R~~Y~rRfv~~~~~~g~k~~~N~~s   59 (59)
T PF04758_consen    8 RAGKVRGQTPKVEKQEKKKKPTGRAKKRIQYNRRFVNVVPTFGKKKGPNANS   59 (59)
T ss_dssp             TTTHHHHHSSSSS--HHHHHHHCHHHHHHHHHHHCSTTHHHSCTTTTTTS--
T ss_pred             hcccccccCCCcCccccccCCchhHHHHHhhhhheeeecccCCCccCCCCCC
Confidence            457888 999999999999999999999999999999999999999999986

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry is for the ribosomal protein S30.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_X 2XZM_X 3IZB_Z 3U5G_e 3U5C_e 3J16_E 3IZ6_Z.

>cd01805 RAD23_N Ubiquitin-like domain of RAD23

Probab=99.69  E-value=8.3e-17  Score=111.72  Aligned_cols=67  Identities=25%  Similarity=0.433  Sum_probs=62.7

Q ss_pred             eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCC--CCCCeEEEEcCeecCCCCChhhhc---CCccceEEE
Q psy2142          50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKV--ALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVP  116 (168)
Q Consensus        50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGI--p~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvr  116 (168)
                      |+|+||+.++  ++++|++++||++||++|++.+|+  |+++|+|+|+|++|+|+.+|++|+   +++|+++++
T Consensus         1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~   74 (77)
T cd01805           1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVS   74 (77)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEe
Confidence            8999999865  889999999999999999999999  999999999999999999999998   788887764

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).

>cd01791 Ubl5 UBL5 ubiquitin-like modifier

Probab=99.69  E-value=6.2e-17  Score=113.93  Aligned_cols=66  Identities=20%  Similarity=0.356  Sum_probs=61.7

Q ss_pred             ceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceE
Q psy2142          49 MKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIF  114 (168)
Q Consensus        49 ~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lv  114 (168)
                      +|+|+|++..|  +.++|+|++||++||++|++..|+|+++|+|+|+|++|+|+.+|++|+   ++|+||-
T Consensus         1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~   71 (73)
T cd01791           1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELY   71 (73)
T ss_pred             CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEE
Confidence            59999999854  888999999999999999999999999999999999999999999998   7898874

UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.

>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2

Probab=99.68  E-value=9.4e-17  Score=110.86  Aligned_cols=67  Identities=19%  Similarity=0.328  Sum_probs=62.6

Q ss_pred             eEEEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEE
Q psy2142          50 KRIIVRGQSN-YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVP  116 (168)
Q Consensus        50 MQIfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvr  116 (168)
                      |+|+||+.++ +++++++++||++||++|++.+|+|+++|+|+|+|++|+|+.+|++|+   +++||++++
T Consensus         1 ~~i~vk~~~g~~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~   71 (71)
T cd01808           1 IKVTVKTPKDKEEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK   71 (71)
T ss_pred             CEEEEEcCCCCEEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence            5799999865 789999999999999999999999999999999999999999999999   789999874

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.

>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein

Probab=99.67  E-value=1.6e-16  Score=108.20  Aligned_cols=67  Identities=27%  Similarity=0.369  Sum_probs=62.8

Q ss_pred             eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEE
Q psy2142          50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVP  116 (168)
Q Consensus        50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvr  116 (168)
                      |+|+||++++  +++++++++||++||++|++..|+|++.|+|+|+|++|+|+.+|++|+   +++++++.+
T Consensus         1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~   72 (72)
T cd01809           1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR   72 (72)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence            8999999964  889999999999999999999999999999999999999999999999   789988764

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.

>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2

Probab=99.64  E-value=4.6e-16  Score=110.08  Aligned_cols=68  Identities=19%  Similarity=0.219  Sum_probs=63.6

Q ss_pred             eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEE--EEcCeecCCCCChhhhc---CCccceEEEe
Q psy2142          50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSL--ICSGKTLTDDLSISDLE---SGSIEIFVPL  117 (168)
Q Consensus        50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~L--iy~GK~LeD~~tL~dy~---~sTL~Lvvrl  117 (168)
                      |+|+||..+|  +++++++++||++||++|++.+|+|+++|+|  +|+|++|+|+.+|++|+   +++|+++++-
T Consensus         3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~   77 (80)
T cd01792           3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQN   77 (80)
T ss_pred             eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence            8999999865  7789999999999999999999999999999  99999999999999998   7899998863

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120

Probab=99.63  E-value=5.9e-16  Score=108.59  Aligned_cols=64  Identities=20%  Similarity=0.182  Sum_probs=60.9

Q ss_pred             ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCcc
Q psy2142          59 NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGKL  122 (168)
Q Consensus        59 ~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGKv  122 (168)
                      .++++|++++||++||++|++..|||+++|+|+|+|+.|+|+.+|++|+   +++|+++++++||+.
T Consensus         9 ~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg~~   75 (76)
T cd01800           9 MLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGGRK   75 (76)
T ss_pred             EEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCCcC
Confidence            4889999999999999999999999999999999999999999999998   899999999999863

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.

>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein

Probab=99.61  E-value=1.3e-15  Score=109.45  Aligned_cols=66  Identities=24%  Similarity=0.364  Sum_probs=57.8

Q ss_pred             eEEEEEcCCc----eEEEEcCCCCHHHHHHHHhhhcC--CCCCCeEEEEcCeecCCCCChhhhc-----CCccceEE
Q psy2142          50 KRIIVRGQSN----YVLECQQNETVSHLKNKVASLEK--VALEDFSLICSGKTLTDDLSISDLE-----SGSIEIFV  115 (168)
Q Consensus        50 MQIfVR~~~~----~tleV~~s~TV~~LK~kI~~~eG--Ip~~~Q~Liy~GK~LeD~~tL~dy~-----~sTL~Lvv  115 (168)
                      |.|+||++++    +++++++++||++||++|++..+  .|+++|+|||+||+|+|+.||++|.     +.|+|||.
T Consensus         2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~   78 (79)
T cd01790           2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC   78 (79)
T ss_pred             eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence            6899999864    56677999999999999998764  5589999999999999999999994     78999875

Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=99.60  E-value=5.5e-15  Score=106.47  Aligned_cols=74  Identities=16%  Similarity=0.374  Sum_probs=70.2

Q ss_pred             CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142          47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG  120 (168)
Q Consensus        47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG  120 (168)
                      +..|+|+|+++++  +.++|.+++++..||+++++..|||+++|+|+|+|+.|+|+.|+++|+   +++|+++++++||
T Consensus         9 ~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG   87 (87)
T cd01763           9 SEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG   87 (87)
T ss_pred             CCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence            4569999999976  779999999999999999999999999999999999999999999998   8999999999998

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain

Probab=99.59  E-value=1.9e-15  Score=104.94  Aligned_cols=62  Identities=16%  Similarity=0.258  Sum_probs=55.5

Q ss_pred             EEEEcC-Cc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCC-CChhhhc---CCccce
Q psy2142          52 IIVRGQ-SN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDD-LSISDLE---SGSIEI  113 (168)
Q Consensus        52 IfVR~~-~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~-~tL~dy~---~sTL~L  113 (168)
                      |+||+. ++  ++++|++++||++||++|++.+|+|+++|+|+|+|++|+|+ .+|++|+   +++|+|
T Consensus         1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l   69 (71)
T cd01796           1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVL   69 (71)
T ss_pred             CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEE
Confidence            467877 44  88999999999999999999999999999999999999998 6899998   667665

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.

>PTZ00467 40S ribosomal protein S30; Provisional

Probab=99.58  E-value=2.8e-16  Score=108.86  Aligned_cols=50  Identities=38%  Similarity=0.527  Sum_probs=44.6

Q ss_pred             cCCccc-cchhHHHhhhhhhccchhhhhceecceeeEeeecCCccCCCCCC
Q psy2142         118 LGGKLL-KTEMVEKQEKKKKKTGRAKRRVQYNRRFVNVVQTFGRRRGPNAN  167 (168)
Q Consensus       118 lGGKv~-~~~k~~k~~k~k~~~~r~k~~~~y~~~~~~~~~~~~~~~~~~~~  167 (168)
                      ..|+|. |||||+|+||+|.++|||++|+|||+||+||+.++|+|+..|++
T Consensus        10 rAGKVr~QTPkv~k~eKkk~~~gRA~~R~qYnrRfv~~~~~~g~kr~~~~~   60 (66)
T PTZ00467         10 RAGKVKNQTPKVAKQEKPKQPRGRALKRLKYTRRFLAKTVKPGEKVHMNKQ   60 (66)
T ss_pred             hcccccCCCCCchhhhcccCCCchHHHHHHHHhhhhhccccCCcccccCCC
Confidence            467777 99999999999999999999999999999999998876665554

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=99.56  E-value=6.6e-15  Score=100.00  Aligned_cols=63  Identities=32%  Similarity=0.496  Sum_probs=57.4

Q ss_pred             EcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEe
Q psy2142          55 RGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPL  117 (168)
Q Consensus        55 R~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvrl  117 (168)
                      |+.++  ++++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+   +++|+++++.
T Consensus         1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~   68 (69)
T PF00240_consen    1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP   68 (69)
T ss_dssp             EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred             CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence            34544  889999999999999999999999999999999999999999999999   7889888764

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

>cd01812 BAG1_N Ubiquitin-like domain of BAG1

Probab=99.54  E-value=1.5e-14  Score=98.61  Aligned_cols=66  Identities=21%  Similarity=0.237  Sum_probs=60.2

Q ss_pred             eEEEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEE
Q psy2142          50 KRIIVRGQSN-YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFV  115 (168)
Q Consensus        50 MQIfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvv  115 (168)
                      |+|+||..+. +++++++++||.+||++|++..|+|+++|+|+|+|++|+|+.+|++|+   +++|+++.
T Consensus         1 i~i~vk~~g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~   70 (71)
T cd01812           1 IRVRVKHGGESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE   70 (71)
T ss_pred             CEEEEEECCEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence            5899999743 789999999999999999999999999999999999999999999998   77887653

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).

>KOG0005|consensus

Probab=99.50  E-value=1.2e-14  Score=100.12  Aligned_cols=65  Identities=18%  Similarity=0.345  Sum_probs=60.4

Q ss_pred             eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceE
Q psy2142          50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIF  114 (168)
Q Consensus        50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lv  114 (168)
                      |.|.|+++.+  ..++++|+++|..+|+.|++.+||||.+|+|+|+|+.+.|+.|-++|+   +|.||++
T Consensus         1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv   70 (70)
T KOG0005|consen    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV   70 (70)
T ss_pred             CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence            6788999865  789999999999999999999999999999999999999999999998   7888874

>smart00213 UBQ Ubiquitin homologues

Probab=99.49  E-value=7.5e-14  Score=92.09  Aligned_cols=58  Identities=34%  Similarity=0.526  Sum_probs=55.8

Q ss_pred             eEEEEEcCC-ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc
Q psy2142          50 KRIIVRGQS-NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE  107 (168)
Q Consensus        50 MQIfVR~~~-~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~  107 (168)
                      |+|+||+.+ .+.++|++++||++||++|++..|+|+++|+|+|+|++|+|+.+|++|+
T Consensus         1 ~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~   59 (64)
T smart00213        1 IELTVKTLDGTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYN   59 (64)
T ss_pred             CEEEEEECCceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcC
Confidence            899999997 5889999999999999999999999999999999999999999999998

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>cd01813 UBP_N UBP ubiquitin processing protease

Probab=99.45  E-value=2.3e-13  Score=95.76  Aligned_cols=65  Identities=29%  Similarity=0.388  Sum_probs=57.8

Q ss_pred             eEEEEEcCC-ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEE---cCeecCCCCChhhhc---CCccceE
Q psy2142          50 KRIIVRGQS-NYVLECQQNETVSHLKNKVASLEKVALEDFSLIC---SGKTLTDDLSISDLE---SGSIEIF  114 (168)
Q Consensus        50 MQIfVR~~~-~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy---~GK~LeD~~tL~dy~---~sTL~Lv  114 (168)
                      |.|.||-.+ .++++|++++||++||++|++..|+|+++|+|+|   .|++|+|+.+|++|+   ++.+.|+
T Consensus         1 ~~i~vk~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm   72 (74)
T cd01813           1 VPVIVKWGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM   72 (74)
T ss_pred             CEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence            567888765 4999999999999999999999999999999996   999999999999998   5666554

The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.

>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4

Probab=99.42  E-value=1.9e-13  Score=104.12  Aligned_cols=74  Identities=20%  Similarity=0.201  Sum_probs=62.8

Q ss_pred             CCceEEEEEcCCc---eEEEEcCCCCHHHHHHHHh-----hhcCCC--CCCeEEEEcCeecCCCCChhhhc---------
Q psy2142          47 ENMKRIIVRGQSN---YVLECQQNETVSHLKNKVA-----SLEKVA--LEDFSLICSGKTLTDDLSISDLE---------  107 (168)
Q Consensus        47 ~~~MQIfVR~~~~---~tleV~~s~TV~~LK~kI~-----~~eGIp--~~~Q~Liy~GK~LeD~~tL~dy~---------  107 (168)
                      +..+.|.+|..+|   -...+.+++||++||++|+     ..+|+|  +++|+|||+||+|+|+.||++|+         
T Consensus         2 ~~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~   81 (113)
T cd01814           2 EEQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGG   81 (113)
T ss_pred             CccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCC
Confidence            3567788888876   3468889999999999999     556676  99999999999999999999998         


Q ss_pred             CCccceEEEecCC
Q psy2142         108 SGSIEIFVPLLGG  120 (168)
Q Consensus       108 ~sTL~LvvrllGG  120 (168)
                      ..|+||+++...-
T Consensus        82 ~~TmHvvlr~~~~   94 (113)
T cd01814          82 VITMHVVVQPPLA   94 (113)
T ss_pred             ceEEEEEecCCCC
Confidence            4799999987553

NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=99.42  E-value=4.7e-13  Score=119.67  Aligned_cols=72  Identities=21%  Similarity=0.371  Sum_probs=63.6

Q ss_pred             eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcC---CCCCCeEEEEcCeecCCCCChhhhcCCccceEEEecCCc
Q psy2142          50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEK---VALEDFSLICSGKTLTDDLSISDLESGSIEIFVPLLGGK  121 (168)
Q Consensus        50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eG---Ip~~~Q~Liy~GK~LeD~~tL~dy~~sTL~LvvrllGGK  121 (168)
                      |+|+||+.++  ++|+|++++||.+||++|++..|   +|+++|+|||+|++|+|+.+|++|+....++++.|++++
T Consensus         1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k~   77 (378)
T TIGR00601         1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSKP   77 (378)
T ss_pred             CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEeccC
Confidence            8999999865  88999999999999999999998   999999999999999999999999955555555555543

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP

Probab=99.37  E-value=5.8e-13  Score=94.96  Aligned_cols=50  Identities=28%  Similarity=0.367  Sum_probs=45.6

Q ss_pred             CCCCHHHHHHHHhhh--cCCC-CCCeEEEEcCeecCCCCChhhhc---CCccceEE
Q psy2142          66 QNETVSHLKNKVASL--EKVA-LEDFSLICSGKTLTDDLSISDLE---SGSIEIFV  115 (168)
Q Consensus        66 ~s~TV~~LK~kI~~~--eGIp-~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvv  115 (168)
                      .++||.+||++|++.  +|++ +++|+|||+|++|+|+.||++|+   +++|||+.
T Consensus        19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~   74 (75)
T cd01815          19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR   74 (75)
T ss_pred             ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence            467999999999999  5675 99999999999999999999999   89999875

BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.

>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1

Probab=99.31  E-value=3.5e-12  Score=90.18  Aligned_cols=57  Identities=19%  Similarity=0.166  Sum_probs=51.0

Q ss_pred             CceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecC-CCCChhhhc----CCccceEE
Q psy2142          58 SNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLT-DDLSISDLE----SGSIEIFV  115 (168)
Q Consensus        58 ~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~Le-D~~tL~dy~----~sTL~Lvv  115 (168)
                      .+++++|++++||++||++|++.+|||+++|+| |+|+.|. |+.+|++|+    +++++|-+
T Consensus        13 ~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~   74 (75)
T cd01799          13 VTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI   74 (75)
T ss_pred             CeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence            348899999999999999999999999999999 9999995 669999998    57877653

HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.

>KOG0010|consensus

Probab=99.27  E-value=5.4e-12  Score=115.44  Aligned_cols=71  Identities=18%  Similarity=0.361  Sum_probs=66.4

Q ss_pred             CCceEEEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEe
Q psy2142          47 ENMKRIIVRGQSN-YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPL  117 (168)
Q Consensus        47 ~~~MQIfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvrl  117 (168)
                      ...+.|.||+.+. +.+.|..+.||.+||+.|+...++|+++|+|||+||+|+|++||.+|+   +.|+|||+..
T Consensus        13 ~~~irV~Vkt~~dk~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~   87 (493)
T KOG0010|consen   13 ASLIRVTVKTPKDKYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKS   87 (493)
T ss_pred             cceeEEEEecCCcceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEecc
Confidence            3568999999865 899999999999999999999999999999999999999999999999   8999999854

>cd01769 UBL Ubiquitin-like domain of UBL

Probab=99.17  E-value=9.7e-11  Score=77.99  Aligned_cols=61  Identities=34%  Similarity=0.529  Sum_probs=53.5

Q ss_pred             EEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceE
Q psy2142          54 VRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIF  114 (168)
Q Consensus        54 VR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lv  114 (168)
                      ||..++  +.+++++++||.+||++|++..|+|++.|+|+|+|++|+|+.+|++|+   +++|++.
T Consensus         2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~   67 (69)
T cd01769           2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLV   67 (69)
T ss_pred             eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEE
Confidence            455533  678999999999999999999999999999999999999999999998   5666654

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.

>KOG0011|consensus

Probab=99.16  E-value=4.6e-11  Score=105.00  Aligned_cols=69  Identities=23%  Similarity=0.416  Sum_probs=61.3

Q ss_pred             eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcC--CCCCCeEEEEcCeecCCCCChhhhcCCccceEEEec
Q psy2142          50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEK--VALEDFSLICSGKTLTDDLSISDLESGSIEIFVPLL  118 (168)
Q Consensus        50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eG--Ip~~~Q~Liy~GK~LeD~~tL~dy~~sTL~Lvvrll  118 (168)
                      |+|+||++++  |++++.|++||.++|.+|+...|  .|+++|+|||+|++|.|+.++++|+-..-.++|-|+
T Consensus         1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMl   73 (340)
T KOG0011|consen    1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVML   73 (340)
T ss_pred             CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEE
Confidence            8999999864  99999999999999999999999  999999999999999999999999954444444443

>PRK09336 30S ribosomal protein S30e; Provisional

Probab=99.16  E-value=3.3e-12  Score=84.47  Aligned_cols=39  Identities=28%  Similarity=0.458  Sum_probs=33.9

Q ss_pred             cCCccc-cchhHHHhhhhhhccchhhhhceecceeeEeeec
Q psy2142         118 LGGKLL-KTEMVEKQEKKKKKTGRAKRRVQYNRRFVNVVQT  157 (168)
Q Consensus       118 lGGKv~-~~~k~~k~~k~k~~~~r~k~~~~y~~~~~~~~~~  157 (168)
                      .+|+|. |||||+++||||+ .|||++|+|||+||+|+.+.
T Consensus         9 rAGKVr~qTPkv~k~ekkk~-~gra~~R~qynrRf~~~~~~   48 (50)
T PRK09336          9 KAGKVRSQTPKIPPKPKKNE-VPRVRNRREYERRVLKARQQ   48 (50)
T ss_pred             hcccccCCCCCcchhhhccC-CchhHHHHHHHHHHhhhhcc
Confidence            568888 9999999998555 69999999999999999853

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=99.07  E-value=5.6e-10  Score=76.48  Aligned_cols=66  Identities=27%  Similarity=0.376  Sum_probs=60.0

Q ss_pred             eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCC-CCeEEEEcCeecCCCCChhhhc---CCccceEE
Q psy2142          50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVAL-EDFSLICSGKTLTDDLSISDLE---SGSIEIFV  115 (168)
Q Consensus        50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~-~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvv  115 (168)
                      |+|+|++.++  +.+.|.+++++..|++.+++..|+|+ ++++|+|.|+.|.++.|+++++   +++|++++
T Consensus         1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I   72 (72)
T PF11976_consen    1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII   72 (72)
T ss_dssp             EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence            7899999976  77899999999999999999999999 9999999999999999999999   77888764

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>cd01795 USP48_C USP ubiquitin-specific protease

Probab=99.05  E-value=3.4e-10  Score=85.08  Aligned_cols=58  Identities=26%  Similarity=0.233  Sum_probs=52.9

Q ss_pred             ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCC-CCChhhhc---CCccceEEE
Q psy2142          59 NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTD-DLSISDLE---SGSIEIFVP  116 (168)
Q Consensus        59 ~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD-~~tL~dy~---~sTL~Lvvr  116 (168)
                      -.+++|++++||.+||.+|...+++||++|+|+|.|+.|.| ..||++||   +|.|.|.+.
T Consensus        16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llid   77 (107)
T cd01795          16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKAD   77 (107)
T ss_pred             CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEec
Confidence            36899999999999999999999999999999999999965 48899999   788888774

The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,

>KOG0001|consensus

Probab=99.02  E-value=1.8e-09  Score=70.75  Aligned_cols=68  Identities=25%  Similarity=0.466  Sum_probs=60.8

Q ss_pred             EEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecC
Q psy2142          52 IIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLG  119 (168)
Q Consensus        52 IfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllG  119 (168)
                      +++++..+  ..+++.+.++|..+|.+|+..+|+|+.+|+|.+.|++|+|+.+|.+|+   .++++++.++.+
T Consensus         2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~~   74 (75)
T KOG0001|consen    2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLRG   74 (75)
T ss_pred             EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecCC
Confidence            56666544  779999999999999999999999999999999999999999999998   788998887653

>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B

Probab=98.76  E-value=2.5e-08  Score=71.52  Aligned_cols=65  Identities=15%  Similarity=0.294  Sum_probs=53.2

Q ss_pred             eEEEEEcC-CceE--EEEcCCCCHHHHHHHHhhhcCCCCCCeEE-EEcCe-----ec-CCCCChhhhc---CCccceE
Q psy2142          50 KRIIVRGQ-SNYV--LECQQNETVSHLKNKVASLEKVALEDFSL-ICSGK-----TL-TDDLSISDLE---SGSIEIF  114 (168)
Q Consensus        50 MQIfVR~~-~~~t--leV~~s~TV~~LK~kI~~~eGIp~~~Q~L-iy~GK-----~L-eD~~tL~dy~---~sTL~Lv  114 (168)
                      +.|+|... +.+.  ..++++.||++||++|+...|+||+.|+| +|.|+     .| +|+.+|++|+   +.+||++
T Consensus         2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv   79 (84)
T cd01789           2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI   79 (84)
T ss_pred             EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence            34566654 2334  45999999999999999999999999999 58999     56 6778899999   7889876

Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.

>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A

Probab=98.55  E-value=4.6e-07  Score=68.79  Aligned_cols=69  Identities=20%  Similarity=0.253  Sum_probs=50.9

Q ss_pred             EEEEEcCCc---eEEEEcCCCCHHHHHHHHhhhc-------CCCCCCeEEEEcCeecCCCCChhhhc----C-----Ccc
Q psy2142          51 RIIVRGQSN---YVLECQQNETVSHLKNKVASLE-------KVALEDFSLICSGKTLTDDLSISDLE----S-----GSI  111 (168)
Q Consensus        51 QIfVR~~~~---~tleV~~s~TV~~LK~kI~~~e-------GIp~~~Q~Liy~GK~LeD~~tL~dy~----~-----sTL  111 (168)
                      .|.++..+|   .++..++++||++||+.|....       -..+++++|||.||.|+|+.||++|.    .     .++
T Consensus         4 ~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~vm   83 (111)
T PF13881_consen    4 ELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTVM   83 (111)
T ss_dssp             EEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EEE
T ss_pred             EEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEEE
Confidence            444454444   6789999999999999998642       12567899999999999999999995    2     378


Q ss_pred             ceEEEecC
Q psy2142         112 EIFVPLLG  119 (168)
Q Consensus       112 ~LvvrllG  119 (168)
                      ||+++...
T Consensus        84 Hlvvrp~~   91 (111)
T PF13881_consen   84 HLVVRPNA   91 (111)
T ss_dssp             EEEE-SSS
T ss_pred             EEEecCCC
Confidence            88887654

>PLN02560 enoyl-CoA reductase

Probab=98.53  E-value=3e-07  Score=80.48  Aligned_cols=71  Identities=24%  Similarity=0.258  Sum_probs=57.6

Q ss_pred             eEEEEEcCCc--e---EEEEcCCCCHHHHHHHHhhhcCC-CCCCeEEEEc---C----eecCCCCChhhhc-CCccceEE
Q psy2142          50 KRIIVRGQSN--Y---VLECQQNETVSHLKNKVASLEKV-ALEDFSLICS---G----KTLTDDLSISDLE-SGSIEIFV  115 (168)
Q Consensus        50 MQIfVR~~~~--~---tleV~~s~TV~~LK~kI~~~eGI-p~~~Q~Liy~---G----K~LeD~~tL~dy~-~sTL~Lvv  115 (168)
                      |+|.|+..++  .   +|+++++.||++||++|++..++ ++++|+|++.   |    +.|+|+.+|++|| .+.-.+.+
T Consensus         1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~   80 (308)
T PLN02560          1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF   80 (308)
T ss_pred             CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence            7889987644  3   68999999999999999999886 8999999983   4    4889999999998 33334556


Q ss_pred             EecCC
Q psy2142         116 PLLGG  120 (168)
Q Consensus       116 rllGG  120 (168)
                      .-+|-
T Consensus        81 kDLGp   85 (308)
T PLN02560         81 KDLGP   85 (308)
T ss_pred             EeCCC
Confidence            66774

>cd01788 ElonginB Ubiquitin-like domain of Elongin B

Probab=98.52  E-value=3e-07  Score=70.57  Aligned_cols=72  Identities=18%  Similarity=0.225  Sum_probs=58.2

Q ss_pred             eEEEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc----------CCccceEEEec
Q psy2142          50 KRIIVRGQSN-YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE----------SGSIEIFVPLL  118 (168)
Q Consensus        50 MQIfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~----------~sTL~Lvvrll  118 (168)
                      |-|.||-..+ +-+++.+++||.+||.+|+.....||++|+|+-.+..|+|+.||+|||          ..++-|.++.-
T Consensus         3 vFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r~~   82 (119)
T cd01788           3 VFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFRSS   82 (119)
T ss_pred             eEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEecC
Confidence            4455555554 678999999999999999999999999999998889999999999998          24566666654


Q ss_pred             CCc
Q psy2142         119 GGK  121 (168)
Q Consensus       119 GGK  121 (168)
                      .|.
T Consensus        83 d~~   85 (119)
T cd01788          83 DDT   85 (119)
T ss_pred             CCC
Confidence            454

Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.

>KOG4248|consensus

Probab=98.49  E-value=1.3e-07  Score=92.90  Aligned_cols=68  Identities=16%  Similarity=0.264  Sum_probs=62.9

Q ss_pred             EEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc--CCccceEEEecC
Q psy2142          52 IIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE--SGSIEIFVPLLG  119 (168)
Q Consensus        52 IfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~--~sTL~LvvrllG  119 (168)
                      |.||+++.  +++.+...+||.++|++|.+..+|+.+.|+|||+|++|.|+.++.+|+  +.+|||+=|...
T Consensus         5 v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~vdgk~~hlverppp   76 (1143)
T KOG4248|consen    5 VLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNVDGKVIHLVERPPP   76 (1143)
T ss_pred             eeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccCCCeEEEeeccCCC
Confidence            88999974  889999999999999999999999999999999999999999999999  889999966544

>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A

Probab=98.40  E-value=9.3e-07  Score=63.18  Aligned_cols=65  Identities=20%  Similarity=0.302  Sum_probs=51.2

Q ss_pred             eEEEEEcCC----ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEc----C---eec-CCCCChhhhc---CCccceE
Q psy2142          50 KRIIVRGQS----NYVLECQQNETVSHLKNKVASLEKVALEDFSLICS----G---KTL-TDDLSISDLE---SGSIEIF  114 (168)
Q Consensus        50 MQIfVR~~~----~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~----G---K~L-eD~~tL~dy~---~sTL~Lv  114 (168)
                      ..|+|....    .....++++.||++||++|+...|+|++.|+|.+.    +   ..| +|+.+|+.|+   +.+|+++
T Consensus         2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~   81 (87)
T PF14560_consen    2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV   81 (87)
T ss_dssp             EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred             EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence            467777653    26689999999999999999999999999999987    1   223 5678999999   6667654

>cd00196 UBQ Ubiquitin-like proteins

Probab=98.23  E-value=4.6e-06  Score=51.06  Aligned_cols=56  Identities=27%  Similarity=0.362  Sum_probs=48.9

Q ss_pred             ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceE
Q psy2142          59 NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIF  114 (168)
Q Consensus        59 ~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lv  114 (168)
                      ..++.+.++.|+.+|+++|.+..|++++.|.|+++|..+++...+.+++   ++++++.
T Consensus         9 ~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~   67 (69)
T cd00196           9 TVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLV   67 (69)
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEE
Confidence            4778888999999999999999999999999999999999998886776   5566554

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>KOG0006|consensus

Probab=98.22  E-value=1.9e-06  Score=76.52  Aligned_cols=65  Identities=20%  Similarity=0.379  Sum_probs=56.3

Q ss_pred             eEEEEEcCC-----ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceE
Q psy2142          50 KRIIVRGQS-----NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIF  114 (168)
Q Consensus        50 MQIfVR~~~-----~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lv  114 (168)
                      |-++|+...     +++|+|+.+.+|.+||+-++.+.|+|+++.++||+||.|.|+.|+++|+   .+.+|++
T Consensus         1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~   73 (446)
T KOG0006|consen    1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIM   73 (446)
T ss_pred             CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhh
Confidence            566776542     4889999999999999999999999999999999999999999999887   4556655

>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13

Probab=98.18  E-value=4.2e-06  Score=58.70  Aligned_cols=49  Identities=27%  Similarity=0.396  Sum_probs=42.0

Q ss_pred             cCCCCHHHHHHHHhhhcC-CCCCCeEEE--EcCeecCCCCChhhhc---CCccce
Q psy2142          65 QQNETVSHLKNKVASLEK-VALEDFSLI--CSGKTLTDDLSISDLE---SGSIEI  113 (168)
Q Consensus        65 ~~s~TV~~LK~kI~~~eG-Ip~~~Q~Li--y~GK~LeD~~tL~dy~---~sTL~L  113 (168)
                      +++.||.+||..|++..+ +++++|+|.  +.|++|.|+.+|++||   +++|++
T Consensus        20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv   74 (77)
T cd01801          20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV   74 (77)
T ss_pred             CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence            578899999999998865 689999995  8999999999999998   556554

Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway

Probab=97.97  E-value=1.1e-05  Score=57.81  Aligned_cols=66  Identities=21%  Similarity=0.250  Sum_probs=41.1

Q ss_pred             CceEEEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcC---eec--CCCCChhhhc---CCccce
Q psy2142          48 NMKRIIVRGQSN-YVLECQQNETVSHLKNKVASLEKVALEDFSLICSG---KTL--TDDLSISDLE---SGSIEI  113 (168)
Q Consensus        48 ~~MQIfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~G---K~L--eD~~tL~dy~---~sTL~L  113 (168)
                      ..|-|-||+.+| +-|++++++|+.+|+++|++..++|++.|.|+.+-   ..|  .++.+|+++|   |+.|+|
T Consensus         3 ~~milRvrS~dG~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL   77 (80)
T PF11543_consen    3 SSMILRVRSKDGMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYL   77 (80)
T ss_dssp             ---EEEEE-SSEEEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE-
T ss_pred             ccEEEEEECCCCCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEE
Confidence            568899999998 78999999999999999999999999999886432   234  4567888888   566554

Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.

>PF13019 Telomere_Sde2: Telomere stability and silencing

Probab=97.92  E-value=4.2e-05  Score=61.82  Aligned_cols=74  Identities=22%  Similarity=0.271  Sum_probs=58.4

Q ss_pred             eEEEEEcCCc------eEEEEcCCCCHHHHHHHHhhhcCCCCCC-eEEEEc-Ceec--CCCCChhhhc-------CCccc
Q psy2142          50 KRIIVRGQSN------YVLECQQNETVSHLKNKVASLEKVALED-FSLICS-GKTL--TDDLSISDLE-------SGSIE  112 (168)
Q Consensus        50 MQIfVR~~~~------~tleV~~s~TV~~LK~kI~~~eGIp~~~-Q~Liy~-GK~L--eD~~tL~dy~-------~sTL~  112 (168)
                      |+|||+++++      +.+.+.++.||.+|+.+|.+..++|+.. +.|++. ++.|  .++..++++.       ..+++
T Consensus         1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~   80 (162)
T PF13019_consen    1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR   80 (162)
T ss_pred             CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence            6899999865      5578899999999999999999999888 456663 5565  5666677764       23688


Q ss_pred             eEEEecCCccc
Q psy2142         113 IFVPLLGGKLL  123 (168)
Q Consensus       113 LvvrllGGKv~  123 (168)
                      |.++++|||.=
T Consensus        81 l~~rl~GGKGG   91 (162)
T PF13019_consen   81 LSLRLRGGKGG   91 (162)
T ss_pred             EEEeccCCCcc
Confidence            99999999843

>KOG4495|consensus

Probab=97.57  E-value=0.0001  Score=55.39  Aligned_cols=58  Identities=21%  Similarity=0.257  Sum_probs=48.8

Q ss_pred             eEEEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEE-cC-eecCCCCChhhhc
Q psy2142          50 KRIIVRGQSN-YVLECQQNETVSHLKNKVASLEKVALEDFSLIC-SG-KTLTDDLSISDLE  107 (168)
Q Consensus        50 MQIfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy-~G-K~LeD~~tL~dy~  107 (168)
                      |-|-||-..+ +-++++++.||-+||.+++....-|+++|+|+- .- ..|+|..||++||
T Consensus         3 ~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~g   63 (110)
T KOG4495|consen    3 VFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCG   63 (110)
T ss_pred             eeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhcc
Confidence            4455665554 668999999999999999988888999999997 33 6789999999998

>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi

Probab=97.51  E-value=0.00028  Score=52.43  Aligned_cols=56  Identities=21%  Similarity=0.277  Sum_probs=44.3

Q ss_pred             EEEEcCCc---eEEEEc--CCCCHHHHHHHHhhhc--CCCCCCeEEEEcCeecCCCCChhhhc
Q psy2142          52 IIVRGQSN---YVLECQ--QNETVSHLKNKVASLE--KVALEDFSLICSGKTLTDDLSISDLE  107 (168)
Q Consensus        52 IfVR~~~~---~tleV~--~s~TV~~LK~kI~~~e--GIp~~~Q~Liy~GK~LeD~~tL~dy~  107 (168)
                      |.||.-++   .+|++.  .+.||..||+.|.+.-  ...-..++|||+|+.|.|+..|+.--
T Consensus         3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l   65 (97)
T PF10302_consen    3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSEL   65 (97)
T ss_pred             EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhh
Confidence            55665543   567777  8899999999999886  35566899999999999998877643

They contain a characteristic GFDRL sequence motif.

>KOG1769|consensus

Probab=97.45  E-value=0.001  Score=49.92  Aligned_cols=75  Identities=17%  Similarity=0.339  Sum_probs=66.9

Q ss_pred             CceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCcc
Q psy2142          48 NMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGKL  122 (168)
Q Consensus        48 ~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGKv  122 (168)
                      .-++|.|+++++  ..+.|.-+....-|+..-+++.|++....+++|.|+.+.+.+|-++++   +..|+++....||..
T Consensus        19 ~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG~~   98 (99)
T KOG1769|consen   19 EHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGGFG   98 (99)
T ss_pred             ceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccCCC
Confidence            346777788765  467999999999999999999999999999999999999999999998   889999999999863

>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2

Probab=97.20  E-value=0.0017  Score=46.73  Aligned_cols=62  Identities=13%  Similarity=0.194  Sum_probs=50.5

Q ss_pred             eEEEEEcCC--ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcC-----eecCCCCChhhhc-CCccc
Q psy2142          50 KRIIVRGQS--NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSG-----KTLTDDLSISDLE-SGSIE  112 (168)
Q Consensus        50 MQIfVR~~~--~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~G-----K~LeD~~tL~dy~-~sTL~  112 (168)
                      +|+.|+--+  ..++.|+|.++|..||++|....|++- +|+|.|.-     ..|.+..+|++|| -+.++
T Consensus         1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~   70 (80)
T cd01811           1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTN   70 (80)
T ss_pred             CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccE
Confidence            477787654  388999999999999999999999877 99999953     3568889999999 44433

OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.

>KOG1872|consensus

Probab=96.67  E-value=0.0031  Score=58.32  Aligned_cols=65  Identities=25%  Similarity=0.342  Sum_probs=54.3

Q ss_pred             EEEEEcCCc-eEEE-EcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEE
Q psy2142          51 RIIVRGQSN-YVLE-CQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFV  115 (168)
Q Consensus        51 QIfVR~~~~-~tle-V~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvv  115 (168)
                      .|.||-... +.++ ++.++|+..+|++|....|+||+.|++.+.|..|.|+-.++...   +.|+.++.
T Consensus         5 ~v~VKW~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmG   74 (473)
T KOG1872|consen    5 TVIVKWGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMG   74 (473)
T ss_pred             eEeeeecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeec
Confidence            467776654 7776 99999999999999999999999999999999999986666665   67776653

>KOG3493|consensus

Probab=96.03  E-value=0.0018  Score=45.61  Aligned_cols=49  Identities=22%  Similarity=0.350  Sum_probs=44.9

Q ss_pred             ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc
Q psy2142          59 NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE  107 (168)
Q Consensus        59 ~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~  107 (168)
                      ..-+.+.+++||+++|..|+.+.|-.++...|---+.+++|.-+|++|.
T Consensus        13 KVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dye   61 (73)
T KOG3493|consen   13 KVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYE   61 (73)
T ss_pred             eEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEE
Confidence            3678899999999999999999999999988887788899999999997

>PRK08364 sulfur carrier protein ThiS; Provisional

Probab=95.73  E-value=0.072  Score=36.72  Aligned_cols=66  Identities=23%  Similarity=0.300  Sum_probs=49.2

Q ss_pred             ceEEEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhcCCccceEEEecCC
Q psy2142          49 MKRIIVRGQSN-YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLESGSIEIFVPLLGG  120 (168)
Q Consensus        49 ~MQIfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~~sTL~LvvrllGG  120 (168)
                      +|.|.+.+... ..+++++..||.+|-+++    +++++.-.+..+|.++.++..|.+  ++.+.++...-||
T Consensus         4 mm~v~vng~~~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~~~~l~~--gD~Veii~~V~GG   70 (70)
T PRK08364          4 MIRVKVIGRGIEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALEDDPVKD--GDYVEVIPVVSGG   70 (70)
T ss_pred             EEEEEEeccccceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCCCcCcCC--CCEEEEEccccCC
Confidence            47888876633 678888999999998765    677777888899999976555544  6677776665555

>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast

Probab=95.72  E-value=0.049  Score=37.86  Aligned_cols=61  Identities=25%  Similarity=0.285  Sum_probs=48.7

Q ss_pred             CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCC-eEEE--EcCeecCCC--CChhhhc
Q psy2142          47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALED-FSLI--CSGKTLTDD--LSISDLE  107 (168)
Q Consensus        47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~-Q~Li--y~GK~LeD~--~tL~dy~  107 (168)
                      .....|-||.++|  ..-...+++||.+|.+-|......+... ..|+  |--+.|.++  .||++.+
T Consensus         4 ~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~   71 (82)
T PF00789_consen    4 SDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAG   71 (82)
T ss_dssp             SSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCT
T ss_pred             CCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhc
Confidence            3457899999987  5568899999999999999887666654 6776  677888765  4899987

The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....

>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly

Probab=95.47  E-value=0.037  Score=38.36  Aligned_cols=54  Identities=13%  Similarity=0.194  Sum_probs=39.3

Q ss_pred             ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccc
Q psy2142          59 NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIE  112 (168)
Q Consensus        59 ~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~  112 (168)
                      .+.+.|.|+.++.+|-++.....|+++++-.|.|++++|+-..++.-.|   ++.|.
T Consensus         8 r~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLe   64 (65)
T PF11470_consen    8 RFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLE   64 (65)
T ss_dssp             EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEE
T ss_pred             EEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEe
Confidence            4789999999999999999999999999999999999998777766665   55544

TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.

>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures

Probab=95.44  E-value=0.004  Score=55.00  Aligned_cols=97  Identities=19%  Similarity=0.259  Sum_probs=0.0

Q ss_pred             ceeeeccCCccccccceeEEEeeCCceEEEEEcCCc----eEEEEc-C--CCCHHHHHHHHhh----------hcCCCCC
Q psy2142          24 TSTYYLSKASFGTKFDVAVITMIENMKRIIVRGQSN----YVLECQ-Q--NETVSHLKNKVAS----------LEKVALE   86 (168)
Q Consensus        24 ~~~~~~~~~sf~~~~~~~~~~~~~~~MQIfVR~~~~----~tleV~-~--s~TV~~LK~kI~~----------~eGIp~~   86 (168)
                      +.+|-.+.|.+...   ...+-.+..+.|.+|...+    ++|... |  +.||.+||..+++          .+++|.+
T Consensus        56 ~~~~~~~~s~~~~~---~~aPgs~~sItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~d  132 (309)
T PF12754_consen   56 QRRSTHSASAFAKQ---TPAPGSSKSITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLD  132 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccCCC---CCCCCCCceEEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHH
Confidence            34444555544322   2222235567777887754    333323 3  6899999999999          8999999


Q ss_pred             CeE-----EEEcCeecCCCCChhhhc----------CCccceEEEecCCccc
Q psy2142          87 DFS-----LICSGKTLTDDLSISDLE----------SGSIEIFVPLLGGKLL  123 (168)
Q Consensus        87 ~Q~-----Liy~GK~LeD~~tL~dy~----------~sTL~LvvrllGGKv~  123 (168)
                      ..+     |+|+-+++.|..||.|..          +.++++.+..+||..-
T Consensus       133 Kik~~~~~lL~~kkPv~~~ktl~e~l~~~~~~l~~~~~~vE~gvMVlGGa~~  184 (309)
T PF12754_consen  133 KIKNFRCRLLYKKKPVGDSKTLAEVLADSESRLLSGGKEVEFGVMVLGGAAV  184 (309)
T ss_dssp             ----------------------------------------------------
T ss_pred             HhhhhhhhheecCccCCCcCcHHHHHhcccchhccCCceEEEEEEEECCccc
Confidence            999     999999999988887753          5688888888998644

Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.

>PRK06437 hypothetical protein; Provisional

Probab=94.90  E-value=0.15  Score=35.02  Aligned_cols=63  Identities=22%  Similarity=0.403  Sum_probs=47.5

Q ss_pred             EEEEcCCceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhcCCccceEEEecCC
Q psy2142          52 IIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLESGSIEIFVPLLGG  120 (168)
Q Consensus        52 IfVR~~~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~~sTL~LvvrllGG  120 (168)
                      |+|++....++++++..||++|=++    .|++++...+..+|.++..+..|.+  ++.+.++..+-||
T Consensus         5 ~~v~g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~~~~~L~d--gD~Veiv~~V~GG   67 (67)
T PRK06437          5 IRVKGHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVLEDHNVKK--EDDVLILEVFSGG   67 (67)
T ss_pred             EEecCCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECCCceEcCC--CCEEEEEecccCC
Confidence            4556555578888888899988765    4889999999999999986665553  6777776665554

>PLN02799 Molybdopterin synthase sulfur carrier subunit

Probab=94.89  E-value=0.078  Score=37.06  Aligned_cols=70  Identities=19%  Similarity=0.178  Sum_probs=48.2

Q ss_pred             ceEEEEEcC---------CceEEEEcCCCCHHHHHHHHhhhc-CCCC--CCeEEEEcCeecCCCCChhhhcCCccceEEE
Q psy2142          49 MKRIIVRGQ---------SNYVLECQQNETVSHLKNKVASLE-KVAL--EDFSLICSGKTLTDDLSISDLESGSIEIFVP  116 (168)
Q Consensus        49 ~MQIfVR~~---------~~~tleV~~s~TV~~LK~kI~~~e-GIp~--~~Q~Liy~GK~LeD~~tL~dy~~sTL~Lvvr  116 (168)
                      +|+|.|+..         +..++++.+..||.+|.+.+.... ++..  ..-.+..+|+...++..|.+  ++++.+..+
T Consensus         1 ~m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~~~~l~d--gDeVai~Pp   78 (82)
T PLN02799          1 SVEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTESAALKD--GDELAIIPP   78 (82)
T ss_pred             CeEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCCCcCcCC--CCEEEEeCC
Confidence            478888864         236678888899999999997654 1111  12246678888766555544  778888877


Q ss_pred             ecCC
Q psy2142         117 LLGG  120 (168)
Q Consensus       117 llGG  120 (168)
                      ..||
T Consensus        79 vsGG   82 (82)
T PLN02799         79 ISGG   82 (82)
T ss_pred             CCCC
Confidence            7776

>smart00166 UBX Domain present in ubiquitin-regulatory proteins

Probab=94.85  E-value=0.18  Score=35.21  Aligned_cols=60  Identities=18%  Similarity=0.235  Sum_probs=46.8

Q ss_pred             CceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEE--EcCeecCCC---CChhhhc
Q psy2142          48 NMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLI--CSGKTLTDD---LSISDLE  107 (168)
Q Consensus        48 ~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Li--y~GK~LeD~---~tL~dy~  107 (168)
                      ..-.|-||.++|  ......+++||.+|.+-|....+.+.....|+  |--+.|.++   .||.+.+
T Consensus         3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~g   69 (80)
T smart00166        3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELA   69 (80)
T ss_pred             CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCC
Confidence            345788999987  55688999999999999976666666667775  667788654   6899987

Present in FAF1 and Shp1p.

>cd01770 p47_UBX p47-like ubiquitin domain

Probab=94.76  E-value=0.24  Score=35.14  Aligned_cols=60  Identities=20%  Similarity=0.311  Sum_probs=46.6

Q ss_pred             CceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCC-CCCCeEEE--EcCeecCC-CCChhhhc
Q psy2142          48 NMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKV-ALEDFSLI--CSGKTLTD-DLSISDLE  107 (168)
Q Consensus        48 ~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGI-p~~~Q~Li--y~GK~LeD-~~tL~dy~  107 (168)
                      ..-.|-||.++|  .+...+.++||++|.+-|....+- ......|.  |-.+.|.| +.||+|.|
T Consensus         3 p~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eag   68 (79)
T cd01770           3 PTTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEAN   68 (79)
T ss_pred             CeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCC
Confidence            346788999987  667899999999999999976432 23456665  77888865 68899998

p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PF15044 CLU_N: Mitochondrial function, CLU-N-term

Probab=94.31  E-value=0.057  Score=38.23  Aligned_cols=51  Identities=25%  Similarity=0.427  Sum_probs=42.0

Q ss_pred             EcCCCCHHHHHHHHhhhcC-CCCCCeEEEEcCeecCCCCChhhhc----CCccceE
Q psy2142          64 CQQNETVSHLKNKVASLEK-VALEDFSLICSGKTLTDDLSISDLE----SGSIEIF  114 (168)
Q Consensus        64 V~~s~TV~~LK~kI~~~eG-Ip~~~Q~Liy~GK~LeD~~tL~dy~----~sTL~Lv  114 (168)
                      |.++++|.+|++-|..... ..-....|.++|..|+|...|++..    +++|.++
T Consensus         1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lv   56 (76)
T PF15044_consen    1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELV   56 (76)
T ss_pred             CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEE
Confidence            5789999999999988754 6778889999999999999999886    4455554

>KOG4583|consensus

Probab=94.22  E-value=0.026  Score=50.77  Aligned_cols=61  Identities=23%  Similarity=0.236  Sum_probs=48.4

Q ss_pred             CCceEEEEEcCCc----eEEEEcCCCCHHHHHHHHhhhcC--CCCCCeEEEEcCeecCCCCChhhhc
Q psy2142          47 ENMKRIIVRGQSN----YVLECQQNETVSHLKNKVASLEK--VALEDFSLICSGKTLTDDLSISDLE  107 (168)
Q Consensus        47 ~~~MQIfVR~~~~----~tleV~~s~TV~~LK~kI~~~eG--Ip~~~Q~Liy~GK~LeD~~tL~dy~  107 (168)
                      +-...++||..+.    .+|..+-..||++||..++...-  -=..+|+|+|.||.|.|...|.|.-
T Consensus         7 e~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~l   73 (391)
T KOG4583|consen    7 EFPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWL   73 (391)
T ss_pred             CcceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHH
Confidence            4456788888753    56788888999999999887642  2235899999999999999999863

>KOG1639|consensus

Probab=93.95  E-value=0.12  Score=44.97  Aligned_cols=72  Identities=19%  Similarity=0.271  Sum_probs=50.1

Q ss_pred             eEEEEEcCCc----eEEEEcCCCCHHHHHHHHhhh-cCCCCCCeE----EEEcCeecCCCCChhhhc-CCccceEEEecC
Q psy2142          50 KRIIVRGQSN----YVLECQQNETVSHLKNKVASL-EKVALEDFS----LICSGKTLTDDLSISDLE-SGSIEIFVPLLG  119 (168)
Q Consensus        50 MQIfVR~~~~----~tleV~~s~TV~~LK~kI~~~-eGIp~~~Q~----Liy~GK~LeD~~tL~dy~-~sTL~LvvrllG  119 (168)
                      |.|.+..-+.    ...+.+..+||.|++..|... ..+.+..++    +.-+|++|-|+++|++|+ ++...+.+.-+|
T Consensus         1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~vKDLG   80 (297)
T KOG1639|consen    1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYVKDLG   80 (297)
T ss_pred             CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEEeccC
Confidence            4555554322    235677889999999776655 456553333    345799999999999999 566677788787


Q ss_pred             Cc
Q psy2142         120 GK  121 (168)
Q Consensus       120 GK  121 (168)
                      -.
T Consensus        81 pQ   82 (297)
T KOG1639|consen   81 PQ   82 (297)
T ss_pred             Cc
Confidence            43

>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]

Probab=93.80  E-value=0.16  Score=38.01  Aligned_cols=73  Identities=18%  Similarity=0.303  Sum_probs=62.3

Q ss_pred             eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCcc
Q psy2142          50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGKL  122 (168)
Q Consensus        50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGKv  122 (168)
                      +.|.|-++++  ..+.+..+.+...|....+...|=..+..+++|.|+-++-++|-++++   +..|.++..-+||..
T Consensus        25 inLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG~t  102 (103)
T COG5227          25 INLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGGAT  102 (103)
T ss_pred             cceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcCcc
Confidence            5556656655  567899999999999999999999999999999999999999999998   678888877788764

>cd01767 UBX UBX (ubiquitin regulatory X) domain

Probab=93.71  E-value=0.55  Score=32.45  Aligned_cols=57  Identities=21%  Similarity=0.325  Sum_probs=43.9

Q ss_pred             eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEE--EcCeecCC---CCChhhhc
Q psy2142          50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLI--CSGKTLTD---DLSISDLE  107 (168)
Q Consensus        50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Li--y~GK~LeD---~~tL~dy~  107 (168)
                      -.|-||.++|  .+-....++||.+|.+-|.....- .....|+  |-.+.|.|   +.||.+.|
T Consensus         3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~g   66 (77)
T cd01767           3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAG   66 (77)
T ss_pred             EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcC
Confidence            4688999987  556889999999999999865433 5556666  55677854   68899988

The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis

Probab=93.39  E-value=0.34  Score=35.08  Aligned_cols=45  Identities=11%  Similarity=0.185  Sum_probs=39.0

Q ss_pred             eEEEEEcCCceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCee
Q psy2142          50 KRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKT   96 (168)
Q Consensus        50 MQIfVR~~~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~   96 (168)
                      .+++.+.  ++.|.|.++-+..+|.++|.++.++|+++..|.|.-..
T Consensus         5 vKV~f~~--tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~   49 (80)
T cd06406           5 VKVHFKY--TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEA   49 (80)
T ss_pred             EEEEEEE--EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCC
Confidence            3555554  88999999999999999999999999999999997554

PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain

>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []

Probab=93.06  E-value=0.21  Score=34.97  Aligned_cols=63  Identities=19%  Similarity=0.309  Sum_probs=45.2

Q ss_pred             EEEEEcCC--ceEEEEcCCCCHHHHHHHHhhhcCCCCCC------eEEE-EcCeecCCCCChhhhc---CCccce
Q psy2142          51 RIIVRGQS--NYVLECQQNETVSHLKNKVASLEKVALED------FSLI-CSGKTLTDDLSISDLE---SGSIEI  113 (168)
Q Consensus        51 QIfVR~~~--~~tleV~~s~TV~~LK~kI~~~eGIp~~~------Q~Li-y~GK~LeD~~tL~dy~---~sTL~L  113 (168)
                      .|.|...+  .+.+.+..+.+|++|...|.+..+++..+      -.|. -+|.+|.++.+|++++   |+.|.+
T Consensus         4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L   78 (79)
T PF08817_consen    4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL   78 (79)
T ss_dssp             EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred             EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence            45666654  37789999999999999999987763332      4555 6899999999999998   666654

Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.

>KOG0013|consensus

Probab=92.89  E-value=0.14  Score=43.49  Aligned_cols=48  Identities=21%  Similarity=0.318  Sum_probs=46.0

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc
Q psy2142          60 YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE  107 (168)
Q Consensus        60 ~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~  107 (168)
                      +-+.+..-+|+.++|..+..++|+.+-.|++.|+|+.|-|...|.+|+
T Consensus       159 ~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~  206 (231)
T KOG0013|consen  159 FWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECK  206 (231)
T ss_pred             eeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeee
Confidence            778899999999999999999999999999999999999999999998

>PF14453 ThiS-like: ThiS-like ubiquitin

Probab=92.60  E-value=0.37  Score=32.78  Aligned_cols=49  Identities=18%  Similarity=0.306  Sum_probs=39.4

Q ss_pred             eEEEEEcCCceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc
Q psy2142          50 KRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE  107 (168)
Q Consensus        50 MQIfVR~~~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~  107 (168)
                      |+|+|   ++-.++++++.|+.+||.++..      +.-.+||+|-+..++..|.+-+
T Consensus         1 M~I~v---N~k~~~~~~~~tl~~lr~~~k~------~~DI~I~NGF~~~~d~~L~e~D   49 (57)
T PF14453_consen    1 MKIKV---NEKEIETEENTTLFELRKESKP------DADIVILNGFPTKEDIELKEGD   49 (57)
T ss_pred             CEEEE---CCEEEEcCCCcCHHHHHHhhCC------CCCEEEEcCcccCCccccCCCC
Confidence            77777   4568899999999999998764      3337899999999988887644

>PRK05659 sulfur carrier protein ThiS; Validated

Probab=92.31  E-value=1  Score=30.08  Aligned_cols=62  Identities=21%  Similarity=0.284  Sum_probs=43.8

Q ss_pred             eEEEEEcCCceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecC----CCCChhhhcCCccceEEEecCC
Q psy2142          50 KRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLT----DDLSISDLESGSIEIFVPLLGG  120 (168)
Q Consensus        50 MQIfVR~~~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~Le----D~~tL~dy~~sTL~LvvrllGG  120 (168)
                      |+|+|.   +..+++.+..||.+|=+.    .+++.+...+.++|..+.    ++..|.+  ++.+.++-.+-||
T Consensus         1 m~i~vN---G~~~~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~~~~~~~l~~--gD~vei~~~vgGG   66 (66)
T PRK05659          1 MNIQLN---GEPRELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRSQHASTALRE--GDVVEIVHALGGG   66 (66)
T ss_pred             CEEEEC---CeEEEcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHHHcCcccCCC--CCEEEEEEEecCC
Confidence            666664   457788888899888654    588888888999998876    3333322  6777777665554

>cd01772 SAKS1_UBX SAKS1-like UBX domain

Probab=92.26  E-value=1  Score=31.66  Aligned_cols=58  Identities=17%  Similarity=0.213  Sum_probs=43.6

Q ss_pred             ceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEE--EcCeecCC---CCChhhhc
Q psy2142          49 MKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLI--CSGKTLTD---DLSISDLE  107 (168)
Q Consensus        49 ~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Li--y~GK~LeD---~~tL~dy~  107 (168)
                      .-.|-||.++|  ..-....++||.+|.+-|....+.+ ....|+  |--|.+.+   +.||.+.|
T Consensus         4 ~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elg   68 (79)
T cd01772           4 ETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELG   68 (79)
T ss_pred             EEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCC
Confidence            35788999987  4457888999999999998765432 445565  77788864   37899988

SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd00754 MoaD Ubiquitin domain of MoaD-like proteins

Probab=91.71  E-value=0.48  Score=32.30  Aligned_cols=59  Identities=22%  Similarity=0.316  Sum_probs=43.1

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCC----CCCCeEEEEcCeecCCCCChhhhcCCccceEEEecCC
Q psy2142          60 YVLECQQNETVSHLKNKVASLEKV----ALEDFSLICSGKTLTDDLSISDLESGSIEIFVPLLGG  120 (168)
Q Consensus        60 ~tleV~~s~TV~~LK~kI~~~eGI----p~~~Q~Liy~GK~LeD~~tL~dy~~sTL~LvvrllGG  120 (168)
                      ..+++++..||.+|.+.+....+-    ......+..+|+...++..|.+  ++++.+..++.||
T Consensus        18 ~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~~~~l~~--gD~v~i~ppv~GG   80 (80)
T cd00754          18 EELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVRLDTPLKD--GDEVAIIPPVSGG   80 (80)
T ss_pred             EEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCCCcccCC--CCEEEEeCCCCCC
Confidence            567777789999999999876431    3345667789999885554443  6788888877776

MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.

>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain

Probab=91.15  E-value=2.3  Score=30.59  Aligned_cols=59  Identities=12%  Similarity=0.164  Sum_probs=47.3

Q ss_pred             CceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcC--eecC--------CCCChhhhc
Q psy2142          48 NMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSG--KTLT--------DDLSISDLE  107 (168)
Q Consensus        48 ~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~G--K~Le--------D~~tL~dy~  107 (168)
                      ...+|-||.++|  .+-....++||++|.+-|... +..++...|+.+=  +.++        ++.||++.|
T Consensus         3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaG   73 (85)
T cd01774           3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAG   73 (85)
T ss_pred             ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCCCccccccccccCcCCCCHHHcC
Confidence            456899999987  445778999999999999754 5566889998777  8886        257999998

Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein

Probab=90.91  E-value=0.8  Score=30.72  Aligned_cols=57  Identities=16%  Similarity=0.299  Sum_probs=43.1

Q ss_pred             CceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCC----CChhhhcCCccceEEEecCC
Q psy2142          58 SNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDD----LSISDLESGSIEIFVPLLGG  120 (168)
Q Consensus        58 ~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~----~tL~dy~~sTL~LvvrllGG  120 (168)
                      ++..+++++..||.+|.+++    +++++...+..+|+.+..+    ..|.  .++++.+...+-||
T Consensus         5 Ng~~~~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~~~~~~~L~--~gD~V~ii~~v~GG   65 (65)
T cd00565           5 NGEPREVEEGATLAELLEEL----GLDPRGVAVALNGEIVPRSEWASTPLQ--DGDRIEIVTAVGGG   65 (65)
T ss_pred             CCeEEEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHHHcCceecC--CCCEEEEEEeccCC
Confidence            45678888889999998865    4777888889999998654    2222  27888888877776

ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.

>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases

Probab=90.87  E-value=0.9  Score=31.98  Aligned_cols=59  Identities=20%  Similarity=0.170  Sum_probs=43.7

Q ss_pred             EEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcC----eecCCCCChhhhcCCccc
Q psy2142          54 VRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSG----KTLTDDLSISDLESGSIE  112 (168)
Q Consensus        54 VR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~G----K~LeD~~tL~dy~~sTL~  112 (168)
                      |=.+++  ..+.|.|++||.++=+.+.+.-|+.++.-.|.+.|    +++..++..+...+..|.
T Consensus         4 V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~~~~~~~~~~~~d~~~L~~~El~   68 (72)
T cd01760           4 VYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLGLDEKKPLDLDTDSSSLAGEELE   68 (72)
T ss_pred             EECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEecCCCcCCcCchhhhhhhcCCEEE
Confidence            334554  67899999999999999999999999998888775    556655545444443333

The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.

>PRK06944 sulfur carrier protein ThiS; Provisional

Probab=89.59  E-value=2.3  Score=28.16  Aligned_cols=61  Identities=15%  Similarity=0.303  Sum_probs=41.8

Q ss_pred             eEEEEEcCCceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCC----CChhhhcCCccceEEEecCC
Q psy2142          50 KRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDD----LSISDLESGSIEIFVPLLGG  120 (168)
Q Consensus        50 MQIfVR~~~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~----~tL~dy~~sTL~LvvrllGG  120 (168)
                      |+|+|   ++-.+++.+..||.+|-+.+.    ++ ....+-.+|.....+    ..|.+  ++++.++..+-||
T Consensus         1 m~i~v---Ng~~~~~~~~~tl~~ll~~l~----~~-~~~~v~vN~~~v~~~~~~~~~L~~--gD~vei~~~v~GG   65 (65)
T PRK06944          1 MDIQL---NQQTLSLPDGATVADALAAYG----AR-PPFAVAVNGDFVARTQHAARALAA--GDRLDLVQPVAGG   65 (65)
T ss_pred             CEEEE---CCEEEECCCCCcHHHHHHhhC----CC-CCeEEEECCEEcCchhcccccCCC--CCEEEEEeeccCC
Confidence            56666   445788888889999988754    33 345677899888532    22222  7889888877776

>PRK06488 sulfur carrier protein ThiS; Validated

Probab=88.91  E-value=2.4  Score=28.31  Aligned_cols=61  Identities=20%  Similarity=0.387  Sum_probs=40.3

Q ss_pred             eEEEEEcCCceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCC----CCChhhhcCCccceEEEecCC
Q psy2142          50 KRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTD----DLSISDLESGSIEIFVPLLGG  120 (168)
Q Consensus        50 MQIfVR~~~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD----~~tL~dy~~sTL~LvvrllGG  120 (168)
                      |+|.|.+   -.++++ ..|+.+|.+.+    +++++...+-.+|..+.-    +..|.+  ++.+.++..+-||
T Consensus         1 m~i~~Ng---~~~~~~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~~~~~~~~~L~d--gD~Ieiv~~V~GG   65 (65)
T PRK06488          1 MKLFVNG---ETLQTE-ATTLALLLAEL----DYEGNWLATAVNGELVHKEARAQFVLHE--GDRIEILSPMQGG   65 (65)
T ss_pred             CEEEECC---eEEEcC-cCcHHHHHHHc----CCCCCeEEEEECCEEcCHHHcCccccCC--CCEEEEEEeccCC
Confidence            6677744   455564 45899888764    566666678899998863    222222  7788887777666

>PRK07440 hypothetical protein; Provisional

Probab=88.64  E-value=4  Score=28.14  Aligned_cols=64  Identities=17%  Similarity=0.252  Sum_probs=45.8

Q ss_pred             CceEEEEEcCCceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecC----CCCChhhhcCCccceEEEecCC
Q psy2142          48 NMKRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLT----DDLSISDLESGSIEIFVPLLGG  120 (168)
Q Consensus        48 ~~MQIfVR~~~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~Le----D~~tL~dy~~sTL~LvvrllGG  120 (168)
                      ..|+|.|.+   -.+++....||.+|-+    ..++++....+-++|..+.    ++..|.+  ++.+.++-.+-||
T Consensus         3 ~~m~i~vNG---~~~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r~~w~~~~L~~--gD~IEIv~~v~GG   70 (70)
T PRK07440          3 NPITLQVNG---ETRTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHRQFWEQTQVQP--GDRLEIVTIVGGG   70 (70)
T ss_pred             CceEEEECC---EEEEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCHHHcCceecCC--CCEEEEEEEecCC
Confidence            368888844   4688888889998765    3578888888999999996    2222222  6788877666665

>PRK08053 sulfur carrier protein ThiS; Provisional

Probab=88.42  E-value=3.8  Score=27.61  Aligned_cols=64  Identities=16%  Similarity=0.293  Sum_probs=42.6

Q ss_pred             eEEEEEcCCceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCC--CChhhhcCCccceEEEecCC
Q psy2142          50 KRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDD--LSISDLESGSIEIFVPLLGG  120 (168)
Q Consensus        50 MQIfVR~~~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~--~tL~dy~~sTL~LvvrllGG  120 (168)
                      |+|.|   ++..+++.+..||.+|-+++    +++.....+-.+|..+.-+  .+..=..++.+.++-.+-||
T Consensus         1 m~i~v---Ng~~~~~~~~~tl~~ll~~l----~~~~~~vaVavN~~iv~r~~w~~~~L~~gD~Ieii~~v~GG   66 (66)
T PRK08053          1 MQILF---NDQPMQCAAGQTVHELLEQL----NQLQPGAALAINQQIIPREQWAQHIVQDGDQILLFQVIAGG   66 (66)
T ss_pred             CEEEE---CCeEEEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEeChHHcCccccCCCCEEEEEEEccCC
Confidence            66766   45577888888999988764    4555667788999998622  11111127788877766665

>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal

Probab=87.83  E-value=1.9  Score=29.90  Aligned_cols=59  Identities=24%  Similarity=0.357  Sum_probs=41.9

Q ss_pred             eEEEEcCC-CCHHHHHHHHhhhcC-CC--CCCeEEEEcCeecCCCCChhhhcCCccceEEEecCC
Q psy2142          60 YVLECQQN-ETVSHLKNKVASLEK-VA--LEDFSLICSGKTLTDDLSISDLESGSIEIFVPLLGG  120 (168)
Q Consensus        60 ~tleV~~s-~TV~~LK~kI~~~eG-Ip--~~~Q~Liy~GK~LeD~~tL~dy~~sTL~LvvrllGG  120 (168)
                      .++++.++ .||.+|.+.+.+... +-  .....+..+|+...++..|.+  ++++.+..+..||
T Consensus        18 ~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~~~~l~d--gDevai~PpvsGG   80 (80)
T TIGR01682        18 ETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTDDALLNE--GDEVAFIPPVSGG   80 (80)
T ss_pred             EEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCCCcCcCC--CCEEEEeCCCCCC
Confidence            46788776 899999999988753 11  123467788888887655544  6788887777776

The C-terminal Gly-Gly of this model is critical to function.

>PRK05863 sulfur carrier protein ThiS; Provisional

Probab=86.99  E-value=3.6  Score=27.77  Aligned_cols=62  Identities=16%  Similarity=0.274  Sum_probs=43.7

Q ss_pred             eEEEEEcCCceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCC--CChhhhc-CCccceEEEecCC
Q psy2142          50 KRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDD--LSISDLE-SGSIEIFVPLLGG  120 (168)
Q Consensus        50 MQIfVR~~~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~--~tL~dy~-~sTL~LvvrllGG  120 (168)
                      |+|.|   ++..+++.+..||.+|=+.    .++++....+.++|.++..+  .+  ... ++.+.++-.+-||
T Consensus         1 m~i~v---NG~~~~~~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~~~~--~L~~gD~ieIv~~VgGG   65 (65)
T PRK05863          1 MIVVV---NEEQVEVDEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSDWAT--KLRDGARLEVVTAVQGG   65 (65)
T ss_pred             CEEEE---CCEEEEcCCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhHhhh--hcCCCCEEEEEeeccCC
Confidence            56666   4457777788888877654    58899999999999977432  22  233 7888877665555

>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain

Probab=86.75  E-value=5.4  Score=28.82  Aligned_cols=58  Identities=17%  Similarity=0.281  Sum_probs=46.2

Q ss_pred             ceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEE--EcCeecC---CCCChhhhc
Q psy2142          49 MKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLI--CSGKTLT---DDLSISDLE  107 (168)
Q Consensus        49 ~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Li--y~GK~Le---D~~tL~dy~  107 (168)
                      .-+|-||.++|  ..-....++++++|-.-|.. .|.+++...|+  |-=|.+.   .+.||.+.|
T Consensus         5 ~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~G   69 (82)
T cd01773           5 KARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAG   69 (82)
T ss_pred             eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcC
Confidence            45899999988  44577888999999999997 67788888887  5556663   247899988

Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>smart00455 RBD Raf-like Ras-binding domain

Probab=86.67  E-value=3.2  Score=28.78  Aligned_cols=51  Identities=24%  Similarity=0.173  Sum_probs=40.8

Q ss_pred             cCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcC--eecCCCCChhhh
Q psy2142          56 GQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSG--KTLTDDLSISDL  106 (168)
Q Consensus        56 ~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~G--K~LeD~~tL~dy  106 (168)
                      .+++  ..+.+.|+.||.++=+.+.+..|+.+++-.|+..|  ++|+-++.....
T Consensus         6 LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g~~k~ldl~~~~~~l   60 (70)
T smart00455        6 LPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRGEKKPLDLNQPISSL   60 (70)
T ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCcceecCCccccc
Confidence            3444  67899999999999999999999999999999855  677655544443

>TIGR01683 thiS thiamine biosynthesis protein ThiS

Probab=85.61  E-value=3.9  Score=27.26  Aligned_cols=59  Identities=17%  Similarity=0.193  Sum_probs=41.3

Q ss_pred             CceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCC--ChhhhcCCccceEEEecCC
Q psy2142          58 SNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDL--SISDLESGSIEIFVPLLGG  120 (168)
Q Consensus        58 ~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~--tL~dy~~sTL~LvvrllGG  120 (168)
                      ++..+++.+..||.+|.+.+    +++++...+..+|..+..+.  +..=..++.+.++..+-||
T Consensus         4 Ng~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~~~~~~~~L~~gD~veii~~V~GG   64 (64)
T TIGR01683         4 NGEPVEVEDGLTLAALLESL----GLDPRRVAVAVNGEIVPRSEWDDTILKEGDRIEIVTFVGGG   64 (64)
T ss_pred             CCeEEEcCCCCcHHHHHHHc----CCCCCeEEEEECCEEcCHHHcCceecCCCCEEEEEEeccCC
Confidence            45678888888999998864    57778888889999985321  1111127788887777666

This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=85.30  E-value=2.5  Score=30.86  Aligned_cols=41  Identities=7%  Similarity=0.075  Sum_probs=33.7

Q ss_pred             EEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCC---CCeEEEE
Q psy2142          52 IIVRGQSN--YVLECQQNETVSHLKNKVASLEKVAL---EDFSLIC   92 (168)
Q Consensus        52 IfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~---~~Q~Liy   92 (168)
                      +.++.++|  +-+.+.|++.+.+|++.|+++.|+..   ....|.|
T Consensus         3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y   48 (86)
T cd06409           3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY   48 (86)
T ss_pred             EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence            55677766  66899999999999999999999987   4666666

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>cd01771 Faf1_UBX Faf1 UBX domain

Probab=84.89  E-value=8.8  Score=27.19  Aligned_cols=59  Identities=22%  Similarity=0.373  Sum_probs=46.9

Q ss_pred             CceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEE--EcCeecC--C-CCChhhhc
Q psy2142          48 NMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLI--CSGKTLT--D-DLSISDLE  107 (168)
Q Consensus        48 ~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Li--y~GK~Le--D-~~tL~dy~  107 (168)
                      ...+|-||.++|  .+-....++++++|-.-|.. .|.+++...|+  |-=+.+.  | +.||.+.|
T Consensus         3 ~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~-~~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~g   68 (80)
T cd01771           3 PISKLRVRTPSGDFLERRFLGDTPLQVLLNFVAS-KGYPIDEYKLLSSWPRRDLTQLDPNFTLLELK   68 (80)
T ss_pred             CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCCCCcCCCCCCcHHHcC
Confidence            456899999987  44588999999999999986 57777888886  6667774  2 46899988

Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14

Probab=84.47  E-value=4.2  Score=28.99  Aligned_cols=55  Identities=18%  Similarity=0.222  Sum_probs=42.4

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcC--eecCCCCChhhhcCCccceE
Q psy2142          60 YVLECQQNETVSHLKNKVASLEKVALEDFSLICSG--KTLTDDLSISDLESGSIEIF  114 (168)
Q Consensus        60 ~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~G--K~LeD~~tL~dy~~sTL~Lv  114 (168)
                      ..+.+.|.+||.++=.++.+.-|++++.--++..|  ++|..++..+.+.+..+.+.
T Consensus        12 T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~~k~l~~~qD~~~L~~~El~vE   68 (73)
T cd01817          12 TVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGGDKPLVLDQDSSVLAGQEVRLE   68 (73)
T ss_pred             EEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecCCcccccCCccceeeccEEEEE
Confidence            67899999999999999999999999888787766  57766655555444444443

RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.

>KOG4250|consensus

Probab=81.54  E-value=2.8  Score=41.08  Aligned_cols=47  Identities=9%  Similarity=0.062  Sum_probs=39.2

Q ss_pred             ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhh
Q psy2142          59 NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDL  106 (168)
Q Consensus        59 ~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy  106 (168)
                      .+++-+++++|+..+.+.|....|||.+.|.|+|.|...-.+. ..+|
T Consensus       326 ~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~h~~~-~~Q~  372 (732)
T KOG4250|consen  326 SHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLSHLED-SAQC  372 (732)
T ss_pred             EEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCccccCc-cccc
Confidence            3889999999999999999999999999999999976554333 3444

>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer

Probab=81.30  E-value=3.3  Score=27.78  Aligned_cols=59  Identities=22%  Similarity=0.391  Sum_probs=43.9

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcC-C-CCCCeEEEEcCeecCC---CCChhhhcCCccceEEEecCC
Q psy2142          60 YVLECQQNETVSHLKNKVASLEK-V-ALEDFSLICSGKTLTD---DLSISDLESGSIEIFVPLLGG  120 (168)
Q Consensus        60 ~tleV~~s~TV~~LK~kI~~~eG-I-p~~~Q~Liy~GK~LeD---~~tL~dy~~sTL~LvvrllGG  120 (168)
                      ..+++.+..||.+|.+.+..... + ......+..+|+...+   +..|.+  ++++.++..+.||
T Consensus        14 ~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~~~~~~~l~~--gD~V~i~ppvsGG   77 (77)
T PF02597_consen   14 EEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPDDGLDTPLKD--GDEVAILPPVSGG   77 (77)
T ss_dssp             EEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGGGTTTSBEET--TEEEEEEESTSTS
T ss_pred             eEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCCccCCcCcCC--CCEEEEECCCCCC
Confidence            46788889999999999987652 1 2257788899999988   443322  7788888777776

ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....

>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras

Probab=81.21  E-value=14  Score=25.54  Aligned_cols=56  Identities=16%  Similarity=0.091  Sum_probs=38.9

Q ss_pred             cCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEE--cCeecCCCCChhhhcCCcc
Q psy2142          56 GQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLIC--SGKTLTDDLSISDLESGSI  111 (168)
Q Consensus        56 ~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy--~GK~LeD~~tL~dy~~sTL  111 (168)
                      -+++  ..+.|.|++||.+.=+.+-+.-|+.++.-.++.  ..++|..++..+...+-.+
T Consensus         7 LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~~d~~~L~~~El   66 (71)
T PF02196_consen    7 LPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWDQDSSSLPGEEL   66 (71)
T ss_dssp             ETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TTSBGGGGTTSEE
T ss_pred             CCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCCCceeeecCCEE
Confidence            3554  568999999999999999999999998766653  5677777776666554333

It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.

>KOG3206|consensus

Probab=80.10  E-value=4.1  Score=34.72  Aligned_cols=64  Identities=17%  Similarity=0.290  Sum_probs=45.4

Q ss_pred             EEEEEcCC-c--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEE-EcC-----eecCC-CCChhhhc---CCccceE
Q psy2142          51 RIIVRGQS-N--YVLECQQNETVSHLKNKVASLEKVALEDFSLI-CSG-----KTLTD-DLSISDLE---SGSIEIF  114 (168)
Q Consensus        51 QIfVR~~~-~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Li-y~G-----K~LeD-~~tL~dy~---~sTL~Lv  114 (168)
                      .|+|-... .  ......++.||.++|.++.-..|.+++.+.|. |.|     -.|.| +..|..|.   +..||++
T Consensus         3 ~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihvi   79 (234)
T KOG3206|consen    3 RVVISSSLNDFRTEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVI   79 (234)
T ss_pred             EEEEecccccchhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEE
Confidence            45554432 2  34567899999999999999999999999886 444     35654 46688887   4455543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	168
3iz6_Z	62	Localization Of The Small Subunit Ribosomal Protein		7e-05
2l7r_A	93	Solution Nmr Structure Of N-Terminal Ubiquitin-Like		4e-04

>pdb|3IZ6|Z Chain Z, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 62

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 18/29 (62%), Positives = 24/29 (82%)
Query: 139 GRAKRRVQYNRRFVNVVQTFGRRRGPNAN 167
           GRA +R+QYNRRFV  V  FG++RGPN++
Sbjct: 32  GRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

>pdb|2L7R|A Chain A, Solution Nmr Structure Of N-Terminal Ubiquitin-Like Domain Of Fubi, A Ribosomal Protein S30 Precursor From Homo Sapiens. Northeast Structural Genomics Consortium (Nesg) Target Hr6166 Length = 93

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 51  RIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSIS 104
           ++ VR Q  +  E    ETV+ +K  VASLE +A ED  ++ +G  L D+ ++ 
Sbjct: 21  QLFVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLG 74

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	168
3iz6_Z	62	40S ribosomal protein S30 (S30E); eukaryotic ribos	2e-18
3u5c_E	261	RP5, S7, YS6, 40S ribosomal protein S4-A; translat	3e-18
2xzm_X	80	RPS30E; ribosome, translation; 3.93A {Tetrahymena	1e-15
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	3e-11
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	2e-06
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	2e-05
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	2e-05
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	3e-05
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	4e-05
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	4e-05
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	4e-05
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	5e-05
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	5e-05
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	6e-05
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	7e-05
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	9e-05
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	9e-05
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	1e-04
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	1e-04
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	1e-04
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	1e-04
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	1e-04
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	1e-04
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	1e-04
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	1e-04
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	1e-04
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	2e-04
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	2e-04
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	2e-04
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	2e-04
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	3e-04
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	3e-04
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	3e-04
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	3e-04
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	3e-04
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	3e-04
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	3e-04
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	4e-04
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	4e-04
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	6e-04
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	6e-04
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	7e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	8e-04
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	9e-04

>3iz6_Z 40S ribosomal protein S30 (S30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 62

 Score = 73.6 bits (180), Expect = 2e-18
 Identities = 26/45 (57%), Positives = 34/45 (75%)

Query: 124 KTEMVEKQEKKKKKTGRAKRRVQYNRRFVNVVQTFGRRRGPNANS 168
           +T  V KQ+KKKK  GRA +R+QYNRRFV  V  FG++RGPN++ 
Sbjct: 17  QTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSE 61

>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E Length = 261

 Score = 73.5 bits (180), Expect = 3e-18
 Identities = 0/46 (0%), Positives = 11/46 (23%), Gaps = 1/46 (2%)

Query: 124 KTEMVEKQEKKKKKTGRAKRRVQYNRRFVNVVQTFGRRR-GPNANS 168
              + +       +      +++ +   +  ++   +         
Sbjct: 17  HWLLDKLSGCYAPRPSAGPHKLRESLPLIVFLRNRLKYALNGREVK 62

>2xzm_X RPS30E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_X 3j0o_X 3j0l_X 3j0p_X 3j0q_X Length = 80

 Score = 67.1 bits (163), Expect = 1e-15
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 3/48 (6%)

Query: 124 KTEMVEKQEKKKKK-TGRAKRRVQYNRRFVNVVQTFG--RRRGPNANS 168
           +T  VEK++K +K   GR+ +R+ YNRR+   +      +R+ PN ++
Sbjct: 17  QTPKVEKKDKPRKTPKGRSYKRILYNRRYAPHILATDPKKRKSPNWHA 64

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 93

 Score = 55.9 bits (135), Expect = 3e-11
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 3/72 (4%)

Query: 52  IIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD--LESG 109
           + VR Q  +  E    ETV+ +K  VASLE +A ED  ++ +G  L D+ ++    +E+ 
Sbjct: 22  LFVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEAL 81

Query: 110 S-IEIFVPLLGG 120
           + +E+   +LGG
Sbjct: 82  TTLEVAGRMLGG 93

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225

 Score = 44.0 bits (104), Expect = 2e-06
 Identities = 5/78 (6%), Positives = 12/78 (15%), Gaps = 14/78 (17%)

Query: 62  LECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD--LESGS-IEIFVPLL 118
              ++   V         +++   E            +    S                 
Sbjct: 15  EVVEEFTPVVLATPIPEEVQQAQTEIKLFNKWSFEEVEVKDASLVDYVQVRQPIFVAHTA 74

Query: 119 GGKLLKTEMVEKQEKKKK 136
           G               K+
Sbjct: 75  GRY-----------ANKR 81

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Length = 88

 Score = 40.5 bits (95), Expect = 2e-05
 Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 8/83 (9%)

Query: 45  MIENMKRIIVR---GQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDL 101
           M E +  I+VR   G+S    E +  +TV+HLK +V+ LE V  + F L   GK L D L
Sbjct: 1   MDEPL-SILVRNNKGRS-STYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQL 58

Query: 102 SISD--LESGS-IEIFVPLLGGK 121
            + +  L+  S + + + L GG 
Sbjct: 59  PLGEYGLKPLSTVFMNLRLRGGL 81

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 40.4 bits (95), Expect = 2e-05
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 51  RIIVRGQSN-YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD--LE 107
           R+ V+   + +     +N  V   K +++       +   LI +GK L D   +S   + 
Sbjct: 19  RVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGIL 78

Query: 108 SGSI 111
            GS 
Sbjct: 79  DGST 82

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106

 Score = 40.1 bits (94), Expect = 3e-05
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 49  MKRIIVR--GQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD 105
           +  +  +   +    L+ + + T+   K K+A           LI SGK L D  ++S+
Sbjct: 2   VS-LTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSE 59

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 Length = 189

 Score = 41.3 bits (96), Expect = 4e-05
 Identities = 15/98 (15%), Positives = 40/98 (40%), Gaps = 10/98 (10%)

Query: 61  VLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLESGSIEIFVPLLGG 120
           +   +Q  +V  LK++++      ++  +L+ +G    +   ++D               
Sbjct: 14  IYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVTD---DVTYYLS----- 65

Query: 121 KLLKTEMVEKQEKKKKKTGRAKRRVQYNRRFVNVVQTF 158
             LK    +K++KKK  T + K + ++    +  +  +
Sbjct: 66  --LKLLGGKKKKKKKSYTTKKKTKHRHVHTKLGALAFY 101

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 101

 Score = 39.7 bits (93), Expect = 4e-05
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 51  RIIVRGQSN-YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD--LE 107
           ++ V+           +N +V   K +++   K   +   LI +GK L D  ++S   + 
Sbjct: 27  KVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIH 86

Query: 108 SGSI 111
            G  
Sbjct: 87  DGLT 90

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Length = 85

 Score = 39.2 bits (92), Expect = 4e-05
 Identities = 13/60 (21%), Positives = 24/60 (40%)

Query: 47  ENMKRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDL 106
             +K  +  G  +  L    + TV  LK+++  +  V      LI  GK L +  ++   
Sbjct: 11  STIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQS 70

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Length = 76

 Score = 38.8 bits (91), Expect = 5e-05
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 60  YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD--LESGS-IEIFVP 116
             ++ +  + V  +K +V   E +  +   LI SGK + D+ + +D  +  GS + + + 
Sbjct: 13  IEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLA 72

Query: 117 LLGG 120
           L GG
Sbjct: 73  LRGG 76

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77

 Score = 38.7 bits (91), Expect = 5e-05
 Identities = 13/50 (26%), Positives = 21/50 (42%)

Query: 56  GQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD 105
           GQ  + +      TV   K  +     + + +  LI SGK L DD ++  
Sbjct: 12  GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVES 61

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Length = 76

 Score = 38.4 bits (90), Expect = 6e-05
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 62  LECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD--LESGSI 111
           +E   + ++  LK  VA  + V  +   +I +GK L + L++ +  LE  SI
Sbjct: 15  VEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSI 66

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 85

 Score = 38.9 bits (91), Expect = 7e-05
 Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 3/64 (4%)

Query: 60  YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD--LESGS-IEIFVP 116
             LE + ++T+ ++K K+   E +  +   LI +GK L D  ++SD  ++  S + + + 
Sbjct: 16  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLR 75

Query: 117 LLGG 120
           L GG
Sbjct: 76  LRGG 79

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 81

 Score = 38.4 bits (90), Expect = 9e-05
 Identities = 15/46 (32%), Positives = 22/46 (47%)

Query: 60  YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD 105
             L+  ++E VS LK  V+    V +    L+  GK L D   +SD
Sbjct: 20  CSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSD 65

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} Length = 85

 Score = 38.5 bits (90), Expect = 9e-05
 Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 62  LECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD--LESGS-IEIFVPLL 118
           LE + ++T+ ++K K+   E +  +   LI +GK L D  ++SD  + + S + + + L 
Sbjct: 18  LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLR 77

Query: 119 GG 120
           GG
Sbjct: 78  GG 79

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Length = 114

 Score = 38.6 bits (90), Expect = 1e-04
 Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 3/79 (3%)

Query: 60  YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD--LESGS-IEIFVP 116
             LE + ++T+ ++K+K+   E +  +   LI +GK L D  ++SD  ++  S + + + 
Sbjct: 22  ITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLR 81

Query: 117 LLGGKLLKTEMVEKQEKKK 135
           L GG +      E+  +K 
Sbjct: 82  LRGGSMGGAADEEELIRKA 100

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 125

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 3/64 (4%)

Query: 51  RIIVR-GQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD--LE 107
           ++ V+  +        +N +V   K  ++   K   +   LI +GK L D  ++    + 
Sbjct: 34  KVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIH 93

Query: 108 SGSI 111
            G  
Sbjct: 94  DGLT 97

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Length = 90

 Score = 38.0 bits (89), Expect = 1e-04
 Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 47  ENMKRIIVR--GQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSIS 104
           ++++ ++V+                V   K  +A+   +  E   LI  G+ L DD  + 
Sbjct: 4   DSLE-VLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQ 62

Query: 105 D 105
           +
Sbjct: 63  E 63

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Length = 368

 Score = 40.4 bits (93), Expect = 1e-04
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 6/65 (9%)

Query: 47  ENMKRIIVR--GQSNYVLECQQNETVSHLKNKVASLEKVA---LEDFSLICSGKTLTDDL 101
             +  I ++   Q  + +  + +ETV  LK K+ + +      +    LI +GK L+DD+
Sbjct: 6   SAVT-ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDV 64

Query: 102 SISDL 106
            I D 
Sbjct: 65  PIRDY 69

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Length = 88

 Score = 38.1 bits (89), Expect = 1e-04
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 62  LECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD--LESGS-IEIFVPLL 118
           ++ +  + V  +K +V   E +  +   LI SGK + D+ + +D  +  GS + + + L 
Sbjct: 15  IDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALR 74

Query: 119 GGK 121
           GG 
Sbjct: 75  GGG 77

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 13/50 (26%), Positives = 21/50 (42%)

Query: 56  GQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD 105
           GQ  + +      TV   K  +     + + +  LI SGK L DD ++  
Sbjct: 36  GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVES 85

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 38.3 bits (89), Expect = 1e-04
 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 56  GQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDD-LSISDLESGS 110
            +    +E   +E     K ++ +L  V      ++  G TL DD      +++G 
Sbjct: 16  KEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDDDWGNIKMKNGM 71

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Length = 172

 Score = 39.3 bits (91), Expect = 1e-04
 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 3/65 (4%)

Query: 59  NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD--LESGS-IEIFV 115
              LE + ++T+ ++K K+   E +  +   LI +GK L D  ++SD  ++  S + + +
Sbjct: 108 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 167

Query: 116 PLLGG 120
            L GG
Sbjct: 168 RLRGG 172

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 47  ENMKRIIVR-GQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD 105
            ++ ++ V+  +           T+  LK +++   K   +   LI +GK L D  S++ 
Sbjct: 15  PHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQ 74

Query: 106 --LESGSIEIFV 115
             +  G     V
Sbjct: 75  CGVRDGLTVHLV 86

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 51  RIIVRGQSN-YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD--LE 107
           ++ V+   +          T+  LK +++   K   +   LI +GK L D  S++   + 
Sbjct: 24  KVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVR 83

Query: 108 SGSIEIFV 115
            G     V
Sbjct: 84  DGLTVHLV 91

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A Length = 118

 Score = 38.5 bits (89), Expect = 2e-04
 Identities = 12/54 (22%), Positives = 25/54 (46%)

Query: 52  IIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD 105
           +I R ++    + +++ TV  LK  V  + K   E+  L    + L D  ++ +
Sbjct: 6   MIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGE 59

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 37.8 bits (88), Expect = 2e-04
 Identities = 12/44 (27%), Positives = 21/44 (47%)

Query: 62  LECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD 105
           L  +  +TV H+K ++ + E V         SG+ LTD +   +
Sbjct: 38  LVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEE 81

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Length = 79

 Score = 37.0 bits (86), Expect = 2e-04
 Identities = 17/44 (38%), Positives = 25/44 (56%)

Query: 62  LECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD 105
            E +  +TV+HLK +V+ LE V  + F L   GK L D L + +
Sbjct: 19  YEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGE 62

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Length = 88

 Score = 37.3 bits (87), Expect = 3e-04
 Identities = 19/82 (23%), Positives = 46/82 (56%), Gaps = 8/82 (9%)

Query: 45  MIENMKRIIVR---GQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDL 101
            ++ ++ + ++   G++ + +E + ++T+ +LK K+   E +  +   LI +GK L D  
Sbjct: 6   HLQGLQ-LFIKTLTGKT-FTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGR 63

Query: 102 SISD--LESGS-IEIFVPLLGG 120
           ++SD  ++  S + + + L GG
Sbjct: 64  TLSDYNIQKESTLHLVLRLRGG 85

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Length = 115

 Score = 37.5 bits (87), Expect = 3e-04
 Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)

Query: 62  LECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD--LESGS-IEIFVPLL 118
                 + VS +K K+     +      L   G  + D  S++   + SG+ I + +   
Sbjct: 50  FTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLALKER 109

Query: 119 GG 120
            G
Sbjct: 110 SG 111

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Length = 152

 Score = 38.1 bits (88), Expect = 3e-04
 Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 6/99 (6%)

Query: 25  STYYLSKASFGTKFDVAVITMIENMKRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVA 84
           S Y + K S           M   +K +         LE + ++T+ ++K K+   E + 
Sbjct: 57  SDYNIQKESTLHLVLRLRGGMQIFVKTLT---GKTITLEVEPSDTIENVKAKIQDKEGIP 113

Query: 85  LEDFSLICSGKTLTDDLSISD--LESGS-IEIFVPLLGG 120
            +   LI +GK L D  ++SD  ++  S + + + L GG
Sbjct: 114 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 87

 Score = 37.0 bits (86), Expect = 3e-04
 Identities = 9/46 (19%), Positives = 17/46 (36%)

Query: 60  YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD 105
           Y      N  +  LK ++   + +  +   L   G+ L D L +  
Sbjct: 20  YAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGI 65

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: k.45.1.1 PDB: 3dbr_I 3dbl_I Length = 88

 Score = 37.0 bits (86), Expect = 3e-04
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 60  YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD--LESGS-IEIFVP 116
             ++ +  + V  +K +V   E +  +   LI SGK + D+ + +D  +  GS + + + 
Sbjct: 25  IEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLR 84

Query: 117 LLGG 120
           L GG
Sbjct: 85  LRGG 88

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Length = 159

 Score = 38.0 bits (88), Expect = 3e-04
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 5/84 (5%)

Query: 42  VITMIENMKRIIVRGQSNY--VLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTD 99
           V+   +    I+VR         E +  +TV+HLK +V+ LE V  + F L   GK L D
Sbjct: 74  VVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLED 133

Query: 100 DLSISD--LESGS-IEIFVPLLGG 120
            L + +  L+  S + + + L GG
Sbjct: 134 QLPLGEYGLKPLSTVFMNLRLRGG 157

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Length = 88

 Score = 36.9 bits (86), Expect = 3e-04
 Identities = 10/46 (21%), Positives = 16/46 (34%)

Query: 60  YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD 105
                     V   K  +A+   +  E   LI  G+ L DD  + +
Sbjct: 30  RTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQE 75

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Length = 76

 Score = 36.5 bits (85), Expect = 4e-04
 Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 3/64 (4%)

Query: 60  YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD--LESGS-IEIFVP 116
             LE + ++T+ ++K K+   E +  +   LI +GK L D  ++SD  ++  S + + + 
Sbjct: 13  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLR 72

Query: 117 LLGG 120
           L GG
Sbjct: 73  LRGG 76

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 94

 Score = 36.6 bits (85), Expect = 4e-04
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 49  MKRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDD 100
           +   +      + +E  + ETVS LK+K+  +E   ++   L  SG  L DD
Sbjct: 16  IHVTVKFPSKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADD 67

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} Length = 111

 Score = 36.8 bits (85), Expect = 6e-04
 Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 3/64 (4%)

Query: 60  YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD--LESGS-IEIFVP 116
             LE + ++T+ ++K K+   E +  +   LI +GK L D  ++SD  ++  S + + + 
Sbjct: 48  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 107

Query: 117 LLGG 120
           L GG
Sbjct: 108 LRGG 111

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Length = 98

 Score = 36.3 bits (84), Expect = 6e-04
 Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 3/78 (3%)

Query: 60  YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD--LESGS-IEIFVP 116
             LE + ++T+ ++K K+   E +  +   LI +GK L D  ++SD  ++  S + + + 
Sbjct: 13  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72

Query: 117 LLGGKLLKTEMVEKQEKK 134
           L GG+   +  V+K    
Sbjct: 73  LRGGRDPNSSSVDKLAAA 90

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 36.3 bits (84), Expect = 7e-04
 Identities = 8/61 (13%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 47  ENMKRIIVR-GQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD 105
           + +  + +   ++ + ++   + T S LK K+ S+  +      ++  G  + +D ++ +
Sbjct: 15  KELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL-VPEDKTLRE 73

Query: 106 L 106
           +
Sbjct: 74  I 74

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.3 bits (88), Expect = 8e-04
 Identities = 21/126 (16%), Positives = 42/126 (33%), Gaps = 28/126 (22%)

Query: 27  YYLSKASFGTKF-DVAVITMIENMKRIIV-----RGQSNYVLECQQNETVSHLKNKVAS- 79
           ++L+            V+ M++ +   I      R   +  ++ + +   + L+  + S 
Sbjct: 185 FWLN---LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241

Query: 80  --------LEKV----ALEDFSLICSGKTL--TDDLSISDLESGSIEIFVPL--LGGKLL 123
                   L  V    A   F+L C  K L  T    ++D  S +    + L      L 
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSC--KILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 124 KTEMVE 129
             E+  
Sbjct: 300 PDEVKS 305

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} Length = 189

 Score = 37.3 bits (86), Expect = 8e-04
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 3/67 (4%)

Query: 57  QSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD--LESGS-IEI 113
                LE + ++T+ ++K K+   E +  +   LI +GK L D  ++SD  ++  S + +
Sbjct: 115 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 174

Query: 114 FVPLLGG 120
            + L GG
Sbjct: 175 VLRLRGG 181

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 89

 Score = 35.8 bits (83), Expect = 9e-04
 Identities = 11/45 (24%), Positives = 21/45 (46%)

Query: 61  VLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD 105
           + +  +  T+  L+ +V +L  V  E   L   GK L +  ++ D
Sbjct: 23  IEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFD 67

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	168
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	99.89
3u5c_f	152	40S ribosomal protein S31; translation, ribosome,	99.84
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	99.84
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	99.84
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	99.83
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	99.82
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	99.82
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	99.81
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	99.81
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	99.81
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	99.81
4hcn_B	98	Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas	99.81
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	99.8
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	99.8
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	99.8
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	99.8
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	99.8
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	99.79
1we6_A	111	Splicing factor, putative; structural genomics, ub	99.79
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	99.79
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	99.79
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	99.79
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	99.78
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	99.78
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	99.77
2lxa_A	87	Ubiquitin-like protein MDY2; ubiquitin-like domain	99.77
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	99.77
3v6c_B	91	Ubiquitin; structural genomics, structural genomic	99.77
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	99.76
3vdz_A	111	Ubiquitin-40S ribosomal protein S27A; gadolinium,	99.76
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	99.76
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	99.76
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	99.76
3iz6_Z	62	40S ribosomal protein S30 (S30E); eukaryotic ribos	99.76
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	99.75
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	99.75
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	99.75
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	99.75
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	99.75
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	99.75
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	99.6
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	99.74
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	99.74
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	99.73
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	99.73
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	99.73
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	99.73
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	99.73
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	99.72
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	99.72
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	99.71
1wju_A	100	NEDD8 ultimate buster-1; ubiquitin-like domain, st	99.71
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	99.71
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	99.71
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	99.7
3u5c_e	63	40S ribosomal protein S30-A, 40S ribosomal protein	99.69
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	99.69
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	99.69
4a20_A	98	Ubiquitin-like protein MDY2; protein binding, GET-	99.69
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	99.69
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	99.68
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	99.67
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	99.67
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	99.66
4ajy_B	118	Transcription elongation factor B polypeptide 2; E	99.66
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	99.63
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	99.62
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	99.61
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	99.6
2xzm_X	80	RPS30E; ribosome, translation; 3.93A {Tetrahymena	99.59
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	99.59
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	99.59
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	99.59
2daf_A	118	FLJ35834 protein; hypothetical protein FLJ35834, u	99.57
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	99.57
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	99.56
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	99.56
2dzj_A	88	Synaptic glycoprotein SC2; ubiquitin-like fold, st	99.55
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	99.53
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	99.52
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	99.5
2kjr_A	95	CG11242; UBL, ubiquitin, ubiquitin-like, structura	99.49
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	99.47
1wf9_A	107	NPL4 family protein; beta-grAsp fold like domain,	99.46
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	99.43
4b6w_A	86	Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik	99.43
2kj6_A	97	Tubulin folding cofactor B; methods development, N	99.43
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	99.41
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	99.37
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	99.32
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	99.32
2d07_B	93	Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho	99.29
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	99.25
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	99.23
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	99.21
2eke_C	106	Ubiquitin-like protein SMT3; UBC9, SUMO binding mo	99.18
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	99.18
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	99.09
1wjn_A	97	Tubulin-folding protein TBCE; ubiquitin-like domai	98.82
3kyd_D	115	Small ubiquitin-related modifier 1; SUMO, thioeste	98.65
3pge_A	200	SUMO-modified proliferating cell nuclear antigen;	98.58
4efo_A	94	Serine/threonine-protein kinase TBK1; ubiquitin li	98.45
3tix_A	207	Ubiquitin-like protein SMT3, RNA-induced transcri	98.4
2pjh_A	80	Protein NPL4, nuclear protein localization protein	98.33
3v7o_A	227	Minor nucleoprotein VP30; ssgcid, seattle structur	98.28
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	97.85
3ix6_A	360	TS, tsase, thymidylate synthase; niaid, ssgcid, se	97.69
2jxx_A	97	Nfatc2-interacting protein; nuclear factor of acti	97.6
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	97.59
4da1_A	389	Protein phosphatase 1K, mitochondrial; metal-ION-a	97.15
2al3_A	90	TUG long isoform; TUG UBL1 insulin, endocytosis/ex	96.98
2l76_A	95	Nfatc2-interacting protein; ubiquitin-like domain,	96.71
1ryj_A	70	Unknown; beta/alpha protein, structural genomics,	96.66
2kc2_A	128	Talin-1, F1; FERM, adhesion, cell membrane, cell p	96.07
3qx1_A	84	FAS-associated factor 1; UBX, protein binding, P97	95.96
2l32_A	74	Small archaeal modifier protein 2; protein BIN; NM	94.96
4e71_A	111	Plexin-B2, MM1; transmembrane, signaling, RBD, str	94.63
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	94.09
1wj4_A	124	KIAA0794 protein; UBX domain, beta-grAsp fold, str	93.99
1vjk_A	98	Molybdopterin converting factor, subunit 1; struct	93.63
3rpf_C	74	Molybdopterin converting factor, subunit 1 (MOAD);	93.53
2bps_A	81	YUKD protein; ubiquitin-like protein, ubiquitin; 2	93.48
1tyg_B	87	YJBS; alpha beta barrel, protein-protein complex,	93.23
2dzk_A	109	UBX domain-containing protein 2; ubiquitin-like fo	93.14
1f0z_A	66	THis protein; ubiquitin fold, transport protein; N	92.8
1s3s_G	127	P47 protein; AAA ATPase, protein-protein complex,	91.79
2kvr_A	130	Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubi	90.78
2cr5_A	109	Reproduction 8; UBX domain, D0H8S2298E protein, st	90.49
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	88.32
3po0_A	89	Small archaeal modifier protein 1; ubiquitin-like	88.18
4e74_A	117	Plexin-A4; RBD, structural genomics, structural ge	88.08
2r2o_A	138	Plexin-B1; effector domain, structural genomics, s	88.08
3jyu_A	231	Ubiquitin carboxyl-terminal hydrolase; domain in u	87.93
1rws_A	77	Hypothetical protein PF1061; residual dipolar coup	87.32
1fm0_D	81	Molybdopterin convertin factor, subunit 1; molybde	86.51
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	86.49
4a3p_A	217	Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H	86.02
3h6n_A	127	Plexin-D1; structural genomics consortium, SGC, me	84.67
2kl0_A	73	Putative thiamin biosynthesis THis; structural gen	84.55
2k5p_A	78	THis protein, thiamine-biosynthesis protein; NESG,	83.59
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	83.28
2l52_A	99	Methanosarcina acetivorans SAMP1 homolog; beta-grA	83.14
2daj_A	91	KIAA0977 protein, COBL-like 1; ubiquitin-like doma	82.97
2cu3_A	64	Unknown function protein; thermus thermophilus HB8	81.8
3dwg_C	93	9.5 kDa culture filtrate antigen CFP10A; sulfur ca	81.46
2qjl_A	99	URM1, ubiquitin-related modifier 1; ubiquitin-like	81.35
2q5w_D	77	Molybdopterin converting factor, subunit 1; MOCO,	81.05

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9

Probab=99.89  E-value=2.5e-25  Score=180.98  Aligned_cols=97  Identities=18%  Similarity=0.252  Sum_probs=21.7

Q ss_pred             eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhcCCccceEEEecCCccc----
Q psy2142          50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLESGSIEIFVPLLGGKLL----  123 (168)
Q Consensus        50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~~sTL~LvvrllGGKv~----  123 (168)
                      ||||||++++  ++|+|++++||.+||++|++.+|||+++|+|+|+|++|+|+.+|+  .++||||+++++||++|    
T Consensus         1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs--~~STLhLvlRLrGG~~krkK~   78 (189)
T 2xzm_9            1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT--DDVTYYLSLKLLGGKKKKKKK   78 (189)
T ss_dssp             -------------------------------------------------------------------------CCCCCCC
T ss_pred             CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc--CCCEEEEEEecCCCccccccc
Confidence            8999999854  889999999999999999999999999999999999999999999  89999999999999886    


Q ss_pred             --cchhHHHhhhhhhccchhhhhceecceeeEeee
Q psy2142         124 --KTEMVEKQEKKKKKTGRAKRRVQYNRRFVNVVQ  156 (168)
Q Consensus       124 --~~~k~~k~~k~k~~~~r~k~~~~y~~~~~~~~~  156 (168)
                        ||||++||++||+|..+.        +|++|..
T Consensus        79 ~~~tPK~~k~~kKkvkl~~L--------k~y~Vd~  105 (189)
T 2xzm_9           79 SYTTKKKTKHRHVHTKLGAL--------AFYKLEN  105 (189)
T ss_dssp             CCCSSSCCCCCCCCCCCSCC--------CCEEEET
T ss_pred             ccCCCccccccccccCCcee--------eEEEECC
Confidence              899999999888777543        5677765

>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f

Probab=99.84  E-value=7.9e-23  Score=160.60  Aligned_cols=108  Identities=19%  Similarity=0.310  Sum_probs=22.2

Q ss_pred             eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCcccc
Q psy2142          50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGKLLK  124 (168)
Q Consensus        50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGKv~~  124 (168)
                      |||+|++.++  ++|+|++++||.+||++|++.+|||+++|+|+|+|++|+|+.+|++|+   +++|+|+++++||..+ 
T Consensus         1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGgKk-   79 (152)
T 3u5c_f            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKK-   79 (152)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCCcC-
Confidence            8999999854  889999999999999999999999999999999999999999999998   8999999999999532 


Q ss_pred             chhHHHhhhhhhccchhhhhceecceeeEeeecCCc
Q psy2142         125 TEMVEKQEKKKKKTGRAKRRVQYNRRFVNVVQTFGR  160 (168)
Q Consensus       125 ~~k~~k~~k~k~~~~r~k~~~~y~~~~~~~~~~~~~  160 (168)
                       +|+.-..+||+.+|++|+..+...+|+.|... |+
T Consensus        80 -rkKk~~t~Pkk~~~~~~~~~~~~~~~~~~~~~-~~  113 (152)
T 3u5c_f           80 -RKXXXXXXXXXXXXXXXXXXXXVLSYYKVDAE-GK  113 (152)
T ss_dssp             ---CCCCCCCSCCCCCCCCCCCCCCCCSEECSS-SC
T ss_pred             -cccccccccccccccccccccceeeEEEEccC-Ce
Confidence             11111245677777778888899999999963 54

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}

Probab=99.84  E-value=7.6e-21  Score=131.02  Aligned_cols=73  Identities=30%  Similarity=0.430  Sum_probs=68.7

Q ss_pred             CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecC
Q psy2142          47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLG  119 (168)
Q Consensus        47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllG  119 (168)
                      .+.|+|+||+.++  ++++|++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+   +++|+++++++|
T Consensus         2 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G   79 (79)
T 3phx_B            2 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG   79 (79)
T ss_dssp             -CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred             CCCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence            3579999999865  889999999999999999999999999999999999999999999999   899999999987

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.84  E-value=8.9e-21  Score=132.60  Aligned_cols=77  Identities=16%  Similarity=0.181  Sum_probs=72.7

Q ss_pred             CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCc
Q psy2142          47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGK  121 (168)
Q Consensus        47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGK  121 (168)
                      +..|+|+||+.++  ++++|++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+   +++|+++++++||+
T Consensus         5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG~   84 (87)
T 1wh3_A            5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSGP   84 (87)
T ss_dssp             SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCCS
T ss_pred             CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence            5789999999754  789999999999999999999999999999999999999999999998   78999999999998


Q ss_pred             cc
Q psy2142         122 LL  123 (168)
Q Consensus       122 v~  123 (168)
                      ++
T Consensus        85 ~~   86 (87)
T 1wh3_A           85 SS   86 (87)
T ss_dssp             CC
T ss_pred             CC
Confidence            75

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B

Probab=99.83  E-value=5.8e-21  Score=135.53  Aligned_cols=74  Identities=23%  Similarity=0.390  Sum_probs=66.5

Q ss_pred             eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCccc
Q psy2142          50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGKLL  123 (168)
Q Consensus        50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGKv~  123 (168)
                      |+|+||+.++  ++++|++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+   +++|+|+++++||+++
T Consensus         1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~~~   79 (88)
T 4fbj_B            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGGGL   79 (88)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC-----
T ss_pred             CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCCCC
Confidence            8999998854  889999999999999999999999999999999999999999999998   8999999999999865

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.82  E-value=1.4e-20  Score=130.40  Aligned_cols=76  Identities=26%  Similarity=0.428  Sum_probs=66.6

Q ss_pred             CceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCcc
Q psy2142          48 NMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGKL  122 (168)
Q Consensus        48 ~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGKv  122 (168)
                      ++|+|+||+.++  ++++|++++||.+||++|++..++|+++|+|+|+|++|+|+.+|++|+   +++|+++++++||+.
T Consensus         2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~g   81 (85)
T 3n3k_B            2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGGGG   81 (85)
T ss_dssp             --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC----
T ss_pred             CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCCCC
Confidence            579999999864  889999999999999999999999999999999999999999999998   899999999999975


Q ss_pred             c
Q psy2142         123 L  123 (168)
Q Consensus       123 ~  123 (168)
                      +
T Consensus        82 ~   82 (85)
T 3n3k_B           82 G   82 (85)
T ss_dssp             -
T ss_pred             C
Confidence            4

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=99.82  E-value=4e-20  Score=127.81  Aligned_cols=75  Identities=25%  Similarity=0.410  Sum_probs=69.3

Q ss_pred             CceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCcc
Q psy2142          48 NMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGKL  122 (168)
Q Consensus        48 ~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGKv  122 (168)
                      +.|+|+||..++  ++++|++++||.+||++|++..++|+++|+|+|+|++|+|+.+|++|+   +++|+++++++||+.
T Consensus         2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG~g   81 (85)
T 3mtn_B            2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGGGG   81 (85)
T ss_dssp             -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC--
T ss_pred             CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCCCC
Confidence            579999999864  889999999999999999999999999999999999999999999998   899999999999975

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I

Probab=99.81  E-value=3.1e-20  Score=129.59  Aligned_cols=74  Identities=22%  Similarity=0.383  Sum_probs=70.3

Q ss_pred             CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142          47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG  120 (168)
Q Consensus        47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG  120 (168)
                      ...|+|+||+.++  ++++|++++||.+||++|++..|+|+++|+|+|+|++|+|+.+|++|+   +++|+++++++||
T Consensus        10 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG   88 (88)
T 3dbh_I           10 GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG   88 (88)
T ss_dssp             CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred             CCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            4679999999854  889999999999999999999999999999999999999999999998   8999999999998

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=99.81  E-value=4.6e-20  Score=127.05  Aligned_cols=72  Identities=18%  Similarity=0.377  Sum_probs=68.1

Q ss_pred             ceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142          49 MKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG  120 (168)
Q Consensus        49 ~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG  120 (168)
                      .|+|+||+.++  ++++|++++||.+||++|++.+|+|+++|+|+|+|++|+|+.||++|+   +++|+++++++||
T Consensus         3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG   79 (79)
T 2uyz_B            3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG   79 (79)
T ss_dssp             EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred             eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence            59999999865  789999999999999999999999999999999999999999999998   8999999999998

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}

Probab=99.81  E-value=5e-20  Score=130.50  Aligned_cols=76  Identities=30%  Similarity=0.401  Sum_probs=65.5

Q ss_pred             CceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCcc
Q psy2142          48 NMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGKL  122 (168)
Q Consensus        48 ~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGKv  122 (168)
                      .+|+|+||+.++  ++++|++++||.+||++|++.+|||+++|+|+|+|++|+|+.+|++|+   +++|+|++++.||+-
T Consensus         3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg~~   82 (88)
T 2hj8_A            3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGLE   82 (88)
T ss_dssp             CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC------
T ss_pred             ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCcc
Confidence            469999998754  889999999999999999999999999999999999999999999998   899999999999985


Q ss_pred             c
Q psy2142         123 L  123 (168)
Q Consensus       123 ~  123 (168)
                      |
T Consensus        83 ~   83 (88)
T 2hj8_A           83 H   83 (88)
T ss_dssp             -
T ss_pred             c
Confidence            5

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A

Probab=99.81  E-value=6.2e-20  Score=123.92  Aligned_cols=71  Identities=23%  Similarity=0.413  Sum_probs=66.2

Q ss_pred             eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142          50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG  120 (168)
Q Consensus        50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG  120 (168)
                      |+|+||+.++  ++++|++++||.+||++|++..|+|+++|+|+|+|++|+|+.+|++|+   +++|+++++++||
T Consensus         1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG   76 (76)
T 1ndd_A            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG   76 (76)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred             CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            8999999754  789999999999999999999999999999999999999999999998   8999999999998

>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}

Probab=99.81  E-value=3.5e-20  Score=133.81  Aligned_cols=74  Identities=26%  Similarity=0.464  Sum_probs=69.2

Q ss_pred             CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142          47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG  120 (168)
Q Consensus        47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG  120 (168)
                      ...|+|+||+.++  +.++|++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+   +++|+|+++++||
T Consensus        20 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG   98 (98)
T 4hcn_B           20 GRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   98 (98)
T ss_dssp             --CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred             CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence            5679999998864  889999999999999999999999999999999999999999999998   8899999999998

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.80  E-value=1.1e-19  Score=131.10  Aligned_cols=76  Identities=25%  Similarity=0.393  Sum_probs=71.7

Q ss_pred             eCCceEEEEEcCC-ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCC-CChhhhc---CCccceEEEecCC
Q psy2142          46 IENMKRIIVRGQS-NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDD-LSISDLE---SGSIEIFVPLLGG  120 (168)
Q Consensus        46 ~~~~MQIfVR~~~-~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~-~tL~dy~---~sTL~LvvrllGG  120 (168)
                      ....|+|+||+.+ .++++|++++||.+||++|++.+|+|+++|+|+|+|++|+|+ .+|++|+   +++|+|+++++||
T Consensus        12 ~~~~~~I~Vk~~~~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg   91 (94)
T 2kan_A           12 AVRKIHVTVKFPSKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINR   91 (94)
T ss_dssp             SSCCEEEEEECSSCEEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSS
T ss_pred             CCCCEEEEEEcCCcEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCC
Confidence            3577999999987 488999999999999999999999999999999999999999 9999998   8999999999999


Q ss_pred             c
Q psy2142         121 K  121 (168)
Q Consensus       121 K  121 (168)
                      +
T Consensus        92 ~   92 (94)
T 2kan_A           92 A   92 (94)
T ss_dssp             C
T ss_pred             C
Confidence            6

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1

Probab=99.80  E-value=5.3e-20  Score=130.54  Aligned_cols=76  Identities=24%  Similarity=0.451  Sum_probs=63.7

Q ss_pred             CceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCcc
Q psy2142          48 NMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGKL  122 (168)
Q Consensus        48 ~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGKv  122 (168)
                      ..|||+|++.++  ++++|++++||++||++|++..|+|+++|+|+|+|++|+|+.+|++|+   +++|+++++++||+.
T Consensus         8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG~~   87 (88)
T 1sif_A            8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGL   87 (88)
T ss_dssp             --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-------
T ss_pred             cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCCC
Confidence            579999999865  789999999999999999999999999999999999999999999998   899999999999986


Q ss_pred             c
Q psy2142         123 L  123 (168)
Q Consensus       123 ~  123 (168)
                      +
T Consensus        88 ~   88 (88)
T 1sif_A           88 D   88 (88)
T ss_dssp             -
T ss_pred             C
Confidence            3

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A

Probab=99.80  E-value=1.1e-19  Score=133.19  Aligned_cols=73  Identities=18%  Similarity=0.346  Sum_probs=63.8

Q ss_pred             EEEeeCCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceE
Q psy2142          42 VITMIENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIF  114 (168)
Q Consensus        42 ~~~~~~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lv  114 (168)
                      ++.-.+.+||||||+..+  ++|+|+|++||.+||++|++++|+|+++|+|+|+|++|+|+.||++|+   ++||+|.
T Consensus        14 ~~~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~   91 (93)
T 3plu_A           14 LVPRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY   91 (93)
T ss_dssp             ------CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred             ccCCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence            344558999999999854  889999999999999999999999999999999999999999999999   8899875

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...

Probab=99.80  E-value=1.7e-19  Score=121.79  Aligned_cols=71  Identities=27%  Similarity=0.488  Sum_probs=68.0

Q ss_pred             eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142          50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG  120 (168)
Q Consensus        50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG  120 (168)
                      |+|+||+.++  ++++|++++||.+||++|++..|+|+++|+|+|+|++|+|+.+|++|+   +++|+++++++||
T Consensus         1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG   76 (76)
T 3a9j_A            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG   76 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            8999999754  889999999999999999999999999999999999999999999998   8999999999998

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=99.80  E-value=1.6e-19  Score=130.49  Aligned_cols=74  Identities=18%  Similarity=0.367  Sum_probs=70.4

Q ss_pred             CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142          47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG  120 (168)
Q Consensus        47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG  120 (168)
                      ...|+|+||+.++  ++++|.+++||.+||++|++.+|||+++|+|+|+|++|+|+.||++|+   +++|+|+++++||
T Consensus        19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG   97 (97)
T 1wyw_B           19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG   97 (97)
T ss_dssp             CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred             CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence            4669999999865  889999999999999999999999999999999999999999999998   8999999999998

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.79  E-value=1.1e-19  Score=130.42  Aligned_cols=75  Identities=31%  Similarity=0.437  Sum_probs=68.3

Q ss_pred             eCCceEEEEEcCCceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142          46 IENMKRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG  120 (168)
Q Consensus        46 ~~~~MQIfVR~~~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG  120 (168)
                      ....|+|+||+...++++|++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+   +++|+|+++++||
T Consensus        16 ~~~~m~I~Vk~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG   93 (93)
T 2l7r_A           16 PRGSMQLFVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG   93 (93)
T ss_dssp             ----CEEEEESSSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred             CCCcEEEEEECCCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence            35679999999555899999999999999999999999999999999999999999999998   8999999999998

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.79  E-value=1.2e-19  Score=133.94  Aligned_cols=78  Identities=18%  Similarity=0.185  Sum_probs=73.3

Q ss_pred             eCCceEEEEEcC---Cc--eEEEEcC-CCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEE
Q psy2142          46 IENMKRIIVRGQ---SN--YVLECQQ-NETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVP  116 (168)
Q Consensus        46 ~~~~MQIfVR~~---~~--~tleV~~-s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvr  116 (168)
                      .+..|+|+|+++   ++  ++++|++ ++||.+||++|++.+|||+++|+|+|+|++|+|+.+|++|+   +++|+|+++
T Consensus        24 ~~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r  103 (111)
T 1we6_A           24 HPGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLR  103 (111)
T ss_dssp             CCSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECS
T ss_pred             CCCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEE
Confidence            467899999998   43  8899998 99999999999999999999999999999999999999998   899999999


Q ss_pred             ecCCccc
Q psy2142         117 LLGGKLL  123 (168)
Q Consensus       117 llGGKv~  123 (168)
                      ++||++|
T Consensus       104 ~~GGk~h  110 (111)
T 1we6_A          104 ERSGPSS  110 (111)
T ss_dssp             SCCSSCC
T ss_pred             cCCCCCC
Confidence            9999987

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.79  E-value=3.9e-19  Score=124.90  Aligned_cols=76  Identities=22%  Similarity=0.290  Sum_probs=70.3

Q ss_pred             CCceEEEEEcCC---ceEE-EEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecC
Q psy2142          47 ENMKRIIVRGQS---NYVL-ECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLG  119 (168)
Q Consensus        47 ~~~MQIfVR~~~---~~tl-eV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllG  119 (168)
                      ..+|+|+||..+   .+++ +|++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+   +++|+|+++++|
T Consensus         5 ~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~g   84 (89)
T 1wy8_A            5 SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDS   84 (89)
T ss_dssp             SSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCC
T ss_pred             CCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCC
Confidence            467999999864   4889 599999999999999999999999999999999999999999998   899999999999


Q ss_pred             Ccc
Q psy2142         120 GKL  122 (168)
Q Consensus       120 GKv  122 (168)
                      |+.
T Consensus        85 G~~   87 (89)
T 1wy8_A           85 GPS   87 (89)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            963

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=99.79  E-value=4.1e-19  Score=136.74  Aligned_cols=75  Identities=31%  Similarity=0.443  Sum_probs=69.2

Q ss_pred             CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCc
Q psy2142          47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGK  121 (168)
Q Consensus        47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGK  121 (168)
                      +..|+|+||+.++  ++++|++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+   ++||||+++++||.
T Consensus        79 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG~  158 (159)
T 3rt3_B           79 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGG  158 (159)
T ss_dssp             CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC---
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCCC
Confidence            7889999999854  889999999999999999999999999999999999999999999998   89999999999995

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A

Probab=99.79  E-value=2.1e-19  Score=127.92  Aligned_cols=74  Identities=24%  Similarity=0.385  Sum_probs=67.5

Q ss_pred             ceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCcc
Q psy2142          49 MKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGKL  122 (168)
Q Consensus        49 ~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGKv  122 (168)
                      .|+|+||+.++  ++++|++++||.+||++|++..|+|+++|+|+|+|++|+|+.+|++|+   +++|+|+++++||..
T Consensus         1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~~   79 (96)
T 3k9o_B            1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYAD   79 (96)
T ss_dssp             -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC---
T ss_pred             CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCCc
Confidence            49999999864  889999999999999999999999999999999999999999999998   899999999999964

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A

Probab=99.78  E-value=3.7e-19  Score=125.44  Aligned_cols=75  Identities=16%  Similarity=0.235  Sum_probs=68.8

Q ss_pred             CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc--CCccceEEEecCCc
Q psy2142          47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE--SGSIEIFVPLLGGK  121 (168)
Q Consensus        47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~--~sTL~LvvrllGGK  121 (168)
                      +.+|+|+||+.++  ++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+  +++|||++++.++.
T Consensus         3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i~g~~i~l~~~~~~~~   81 (90)
T 4dwf_A            3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPPQT   81 (90)
T ss_dssp             CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCTTEEEEEEECCCC--
T ss_pred             CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCCCCcEEEEEecCCCCC
Confidence            4679999999854  889999999999999999999999999999999999999999999999  89999999987753

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.78  E-value=2.9e-19  Score=132.15  Aligned_cols=69  Identities=17%  Similarity=0.328  Sum_probs=64.1

Q ss_pred             CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEE
Q psy2142          47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFV  115 (168)
Q Consensus        47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvv  115 (168)
                      +.+|+||||+..+  ++|+|++++||.+||++|++.+|||+++|+|+|+|++|+|+.||++|+   ++||+|+.
T Consensus        26 ~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~   99 (100)
T 1uh6_A           26 ATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY   99 (100)
T ss_dssp             CCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred             CCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence            5679999999854  899999999999999999999999999999999999999999999998   78888863

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.77  E-value=6e-19  Score=125.87  Aligned_cols=75  Identities=24%  Similarity=0.347  Sum_probs=68.3

Q ss_pred             CCceEEEEEcCCc----eEEEEcCCCCHHHHHHHHhhhc--CCCCCCeEEEEcCeecCCCCChhhh--c---CCccceEE
Q psy2142          47 ENMKRIIVRGQSN----YVLECQQNETVSHLKNKVASLE--KVALEDFSLICSGKTLTDDLSISDL--E---SGSIEIFV  115 (168)
Q Consensus        47 ~~~MQIfVR~~~~----~tleV~~s~TV~~LK~kI~~~e--GIp~~~Q~Liy~GK~LeD~~tL~dy--~---~sTL~Lvv  115 (168)
                      ...|+|+||+.++    ++|+|++++||.+||++|++.+  |+|+++|+|+|+|++|+|+.+|++|  +   +++|||++
T Consensus         5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~   84 (93)
T 1wgd_A            5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC   84 (93)
T ss_dssp             SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred             CcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEe
Confidence            4579999999754    5566779999999999999998  9999999999999999999999999  6   78999999


Q ss_pred             EecCCc
Q psy2142         116 PLLGGK  121 (168)
Q Consensus       116 rllGGK  121 (168)
                      +++||+
T Consensus        85 ~~~gg~   90 (93)
T 1wgd_A           85 NVKSGP   90 (93)
T ss_dssp             CCCCCC
T ss_pred             CCCCCC
Confidence            999986

>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}

Probab=99.77  E-value=4.9e-19  Score=127.19  Aligned_cols=68  Identities=21%  Similarity=0.463  Sum_probs=61.5

Q ss_pred             ceEEEEEcCCc--eEEEEc--CCCCHHHHHHHH-hhhcCCCCCCeEEEEcCeecCCCCChhhhc----CCccceEEE
Q psy2142          49 MKRIIVRGQSN--YVLECQ--QNETVSHLKNKV-ASLEKVALEDFSLICSGKTLTDDLSISDLE----SGSIEIFVP  116 (168)
Q Consensus        49 ~MQIfVR~~~~--~tleV~--~s~TV~~LK~kI-~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~----~sTL~Lvvr  116 (168)
                      +||||||+.++  ++|+|+  +++||.+||++| ++.+|+|+++|+|+|+|++|+|+.+|++|+    +++|+|+++
T Consensus         1 mmqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~   77 (87)
T 2lxa_A            1 MVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK   77 (87)
T ss_dssp             CCEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEEC
T ss_pred             CEEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcC
Confidence            59999999865  777765  999999999999 999999999999999999999999999998    477877764

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.77  E-value=6.9e-19  Score=125.83  Aligned_cols=87  Identities=18%  Similarity=0.221  Sum_probs=76.0

Q ss_pred             cCCccccccceeEEEeeCCceEEEEEcCC-ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc-
Q psy2142          30 SKASFGTKFDVAVITMIENMKRIIVRGQS-NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE-  107 (168)
Q Consensus        30 ~~~sf~~~~~~~~~~~~~~~MQIfVR~~~-~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~-  107 (168)
                      |+|+-+++.+..     +..|+|+||... .++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+ 
T Consensus         3 ~~~~~~~~~~~~-----~~~m~i~Vk~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi   77 (96)
T 1wx8_A            3 SGSSGVSGREPS-----SRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGI   77 (96)
T ss_dssp             CCCCCCCCSCCC-----SCEEEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTC
T ss_pred             CCCccccCCCCC-----CCcEEEEEEECCeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCC
Confidence            344445444443     578999999973 3889999999999999999999999999999999999999999999998 


Q ss_pred             --CCccceEEEecCCc
Q psy2142         108 --SGSIEIFVPLLGGK  121 (168)
Q Consensus       108 --~sTL~LvvrllGGK  121 (168)
                        +++|||++++.||+
T Consensus        78 ~~g~~i~l~~~~~~g~   93 (96)
T 1wx8_A           78 LDGSTVHVVVRSHSGP   93 (96)
T ss_dssp             CTTEEEECCBCCSSCS
T ss_pred             CCCCEEEEEEeCCCCC
Confidence              78999999999985

>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B

Probab=99.77  E-value=1e-18  Score=123.97  Aligned_cols=72  Identities=24%  Similarity=0.407  Sum_probs=67.6

Q ss_pred             CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEec
Q psy2142          47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLL  118 (168)
Q Consensus        47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvrll  118 (168)
                      +..|+|+||+.++  ++++|++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+   +++|+|+++++
T Consensus        15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr   91 (91)
T 3v6c_B           15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR   91 (91)
T ss_dssp             CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred             CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence            5679999998865  889999999999999999999999999999999999999999999998   89999999874

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}

Probab=99.76  E-value=2e-18  Score=127.46  Aligned_cols=73  Identities=26%  Similarity=0.458  Sum_probs=68.7

Q ss_pred             CceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142          48 NMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG  120 (168)
Q Consensus        48 ~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG  120 (168)
                      ..|+|+||..++  ++++|++++||.+||++|++..|+|+++|+|+|+|++|+|+.+|++|+   +++|+|+++++||
T Consensus        34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG  111 (111)
T 2ojr_A           34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG  111 (111)
T ss_dssp             SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred             CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            579999999754  889999999999999999999999999999999999999999999998   8999999999998

>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A

Probab=99.76  E-value=1.3e-18  Score=128.76  Aligned_cols=73  Identities=26%  Similarity=0.458  Sum_probs=68.7

Q ss_pred             CceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142          48 NMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG  120 (168)
Q Consensus        48 ~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG  120 (168)
                      ..|+|+||+.++  ++++|++++||.+||++|++..|+|+++|+|+|+|++|+|+.+|++|+   +++|+|+++++||
T Consensus        34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG  111 (111)
T 3vdz_A           34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG  111 (111)
T ss_dssp             GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred             ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence            469999998864  889999999999999999999999999999999999999999999998   8999999999998

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.76  E-value=2.9e-18  Score=117.63  Aligned_cols=72  Identities=25%  Similarity=0.360  Sum_probs=66.7

Q ss_pred             CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEec
Q psy2142          47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLL  118 (168)
Q Consensus        47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvrll  118 (168)
                      +..|+|+||..++  ++++|++++||.+||++|++..|+|+++|+|+|+|++|+|+.+|++|+   +++|+++++++
T Consensus         5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~   81 (81)
T 2dzi_A            5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKPL   81 (81)
T ss_dssp             SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCCC
T ss_pred             CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence            5679999998754  789999999999999999999999999999999999999999999998   88999998763

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.76  E-value=9.9e-19  Score=132.11  Aligned_cols=76  Identities=14%  Similarity=0.151  Sum_probs=67.3

Q ss_pred             eCCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhh------hcCC--CCCCeEEEEcCeecCCCCChhhhc---C--Cc
Q psy2142          46 IENMKRIIVRGQSN--YVLECQQNETVSHLKNKVAS------LEKV--ALEDFSLICSGKTLTDDLSISDLE---S--GS  110 (168)
Q Consensus        46 ~~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~------~eGI--p~~~Q~Liy~GK~LeD~~tL~dy~---~--sT  110 (168)
                      .+..|+|+||+..+  ++|+|++++||.+||++|++      .+|+  |+++|+|||+||+|+|+.||++|+   +  +|
T Consensus        13 ~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~t   92 (116)
T 1wgh_A           13 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTV   92 (116)
T ss_dssp             CSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEE
T ss_pred             CCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceE
Confidence            36779999998754  89999999999999999998      6785  699999999999999999999998   3  58


Q ss_pred             cceEEEecCCc
Q psy2142         111 IEIFVPLLGGK  121 (168)
Q Consensus       111 L~LvvrllGGK  121 (168)
                      |||++++.+..
T Consensus        93 lhLvlr~~~~~  103 (116)
T 1wgh_A           93 MHLVARETLPE  103 (116)
T ss_dssp             EEEEECSSCSS
T ss_pred             EEEEccCCCCC
Confidence            99999887653

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}

Probab=99.76  E-value=1.8e-18  Score=121.49  Aligned_cols=71  Identities=17%  Similarity=0.264  Sum_probs=65.5

Q ss_pred             eCCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc--CCccceEEE
Q psy2142          46 IENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE--SGSIEIFVP  116 (168)
Q Consensus        46 ~~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~--~sTL~Lvvr  116 (168)
                      .+..|+|+||+.++  ++++|++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+  +++|||++|
T Consensus        14 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~g~~i~lv~R   88 (88)
T 4eew_A           14 EPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVER   88 (88)
T ss_dssp             -CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCTTEEEEEEEC
T ss_pred             CCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCCCCcEEEEEEC
Confidence            35779999999854  789999999999999999999999999999999999999999999999  889999875

>3iz6_Z 40S ribosomal protein S30 (S30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.76  E-value=1.3e-20  Score=128.00  Aligned_cols=49  Identities=57%  Similarity=0.939  Sum_probs=46.2

Q ss_pred             Cccc-cchhHHHhhhhhhccchhhhhceecceeeEeeecCCccCCCCCCC
Q psy2142         120 GKLL-KTEMVEKQEKKKKKTGRAKRRVQYNRRFVNVVQTFGRRRGPNANS  168 (168)
Q Consensus       120 GKv~-~~~k~~k~~k~k~~~~r~k~~~~y~~~~~~~~~~~~~~~~~~~~~  168 (168)
                      |||. |||||+++||+|+++||||+|+|||+||+||+++||+|++||+|+
T Consensus        12 GKVR~QTPKV~kqeKkk~~~gRak~R~~YnrRfvnv~~~~g~kr~~n~n~   61 (62)
T 3iz6_Z           12 GKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSE   61 (62)
T ss_dssp             HTTCCCCSSSSCCHHHHHHHHHHHHHHCCCCCCSCHHHHHHTTTCCCCCC
T ss_pred             ccccCCCCCcchhhhccCCchHHHHHHHhhhhhhhcccccCCccCCCCCC
Confidence            5666 999999999999999999999999999999999999999999985

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.75  E-value=2.4e-18  Score=121.83  Aligned_cols=70  Identities=20%  Similarity=0.401  Sum_probs=65.5

Q ss_pred             CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCee-cCCCCChhhhc---CCccceEEE
Q psy2142          47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKT-LTDDLSISDLE---SGSIEIFVP  116 (168)
Q Consensus        47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~-LeD~~tL~dy~---~sTL~Lvvr  116 (168)
                      -+-|+||||+..+  ++++|++++||.+||++|++.+|+|+++|+|+|+|++ |+|+.+|++|+   +++|+|+++
T Consensus         8 ~~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~   83 (84)
T 2kk8_A            8 HSHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS   83 (84)
T ss_dssp             CCCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred             cCceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence            3579999999865  8899999999999999999999999999999999999 99999999998   899999875

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A

Probab=99.75  E-value=3e-18  Score=127.26  Aligned_cols=78  Identities=17%  Similarity=0.128  Sum_probs=72.4

Q ss_pred             eCCceEEEEEcCC------------ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCc
Q psy2142          46 IENMKRIIVRGQS------------NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGS  110 (168)
Q Consensus        46 ~~~~MQIfVR~~~------------~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sT  110 (168)
                      .+..++|.|+.++            .++++|++++||.+||++|++.+|||+++|+|+|+|++|+|+.+|++|+   +++
T Consensus        22 ~~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~  101 (115)
T 1we7_A           22 NKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAV  101 (115)
T ss_dssp             CCSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCE
T ss_pred             CCCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCE
Confidence            4578999999864            3789999999999999999999999999999999999999999999998   899


Q ss_pred             cceEEEecCCccc
Q psy2142         111 IEIFVPLLGGKLL  123 (168)
Q Consensus       111 L~LvvrllGGKv~  123 (168)
                      |+|+++++||++|
T Consensus       102 i~lv~rl~GGk~~  114 (115)
T 1we7_A          102 IHLALKERSGPSS  114 (115)
T ss_dssp             EEEEECCCSCCSC
T ss_pred             EEEEEEcCCCCCC
Confidence            9999999999875

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B

Probab=99.75  E-value=2.2e-18  Score=123.76  Aligned_cols=74  Identities=26%  Similarity=0.452  Sum_probs=68.1

Q ss_pred             eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCccc
Q psy2142          50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGKLL  123 (168)
Q Consensus        50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGKv~  123 (168)
                      |+|+||+.++  ++++|++++||.+||++|++..|+|+++|+|+|+|++|+|+.+|++|+   +++|+++++++||+.-
T Consensus         1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i   79 (98)
T 1yx5_B            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDP   79 (98)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC---
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcC
Confidence            8999999754  889999999999999999999999999999999999999999999998   8999999999998744

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B

Probab=99.75  E-value=2.2e-18  Score=136.57  Aligned_cols=72  Identities=26%  Similarity=0.485  Sum_probs=67.8

Q ss_pred             eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCc
Q psy2142          50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGK  121 (168)
Q Consensus        50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGK  121 (168)
                      |||+||+.++  ++++|++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+   +++|||+++++||+
T Consensus         1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~   77 (169)
T 3l0w_B            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG   77 (169)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC--
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecccc
Confidence            8999999875  889999999999999999999999999999999999999999999998   89999999999996

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.75  E-value=3e-18  Score=117.43  Aligned_cols=70  Identities=23%  Similarity=0.284  Sum_probs=64.6

Q ss_pred             CceEEEEEcCCc---eEEE-EcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEe
Q psy2142          48 NMKRIIVRGQSN---YVLE-CQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPL  117 (168)
Q Consensus        48 ~~MQIfVR~~~~---~tle-V~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvrl  117 (168)
                      ..|+|+||+.++   ++++ |++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+   +++|++++++
T Consensus         1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~   77 (78)
T 2faz_A            1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ   77 (78)
T ss_dssp             -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred             CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence            369999998754   4899 99999999999999999999999999999999999999999998   8999999875

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p

Probab=99.75  E-value=8e-20  Score=138.22  Aligned_cols=74  Identities=26%  Similarity=0.468  Sum_probs=2.6

Q ss_pred             eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCccc
Q psy2142          50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGKLL  123 (168)
Q Consensus        50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGKv~  123 (168)
                      |||+|++.++  ++++|++++||.+||++|++.+|||+++|+|+|+|++|+|+.+|++|+   +++|+|+++++||+++
T Consensus         1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~~~   79 (128)
T 3u5e_m            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIE   79 (128)
T ss_dssp             ----------------------------------------------------------------------------CCC
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCCCCC
Confidence            8999999864  889999999999999999999999999999999999999999999998   8999999999999988

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A

Probab=99.60  E-value=8.3e-20  Score=124.49  Aligned_cols=70  Identities=21%  Similarity=0.358  Sum_probs=66.8

Q ss_pred             eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecC
Q psy2142          50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLG  119 (168)
Q Consensus        50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllG  119 (168)
                      |||+||+.++  ++++|++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+   +++|+++++++|
T Consensus         1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg   75 (76)
T 3b1l_X            1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR   75 (76)
Confidence            8999999865  789999999999999999999999999999999999999999999998   899999999987

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.74  E-value=3.8e-18  Score=130.90  Aligned_cols=75  Identities=23%  Similarity=0.262  Sum_probs=68.2

Q ss_pred             CCceEEEEEcCCc--e-EEEEcCCCCHHHHHHHH-----hhhcCCCC--CCeEEEEcCeecCCCCChhhhc---C-----
Q psy2142          47 ENMKRIIVRGQSN--Y-VLECQQNETVSHLKNKV-----ASLEKVAL--EDFSLICSGKTLTDDLSISDLE---S-----  108 (168)
Q Consensus        47 ~~~MQIfVR~~~~--~-tleV~~s~TV~~LK~kI-----~~~eGIp~--~~Q~Liy~GK~LeD~~tL~dy~---~-----  108 (168)
                      +..|+|+||+.+|  + ++++++++||.+||++|     ++.+|||+  ++|+|||+||+|+|+.||++|+   +     
T Consensus        14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~   93 (126)
T 1se9_A           14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGA   93 (126)
T ss_dssp             CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTC
T ss_pred             cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCC
Confidence            5779999999976  5 68999999999999999     56789997  8999999999999999999998   4     


Q ss_pred             -CccceEEEecCCc
Q psy2142         109 -GSIEIFVPLLGGK  121 (168)
Q Consensus       109 -sTL~LvvrllGGK  121 (168)
                       +|+||+++++||+
T Consensus        94 v~tmhlVlrl~g~~  107 (126)
T 1se9_A           94 VTTMHVIIQAPVTE  107 (126)
T ss_dssp             CEEEEEEECCCSSC
T ss_pred             cEEEEEEeccCCcc
Confidence             6899999999985

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.74  E-value=5.7e-18  Score=123.40  Aligned_cols=75  Identities=16%  Similarity=0.243  Sum_probs=70.6

Q ss_pred             CCceEEEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCc
Q psy2142          47 ENMKRIIVRGQSN-YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGK  121 (168)
Q Consensus        47 ~~~MQIfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGK  121 (168)
                      +..|+|+||..++ ++++|++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+   +++|+|++++.||.
T Consensus        20 ~~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~p   98 (100)
T 1yqb_A           20 PHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRA   98 (100)
T ss_dssp             TTEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCSC
T ss_pred             CCeEEEEEEcCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCCC
Confidence            6789999999865 889999999999999999999999999999999999999999999998   89999999998873

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}

Probab=99.73  E-value=3.7e-18  Score=138.42  Aligned_cols=79  Identities=25%  Similarity=0.402  Sum_probs=72.5

Q ss_pred             EeeCCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEec
Q psy2142          44 TMIENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLL  118 (168)
Q Consensus        44 ~~~~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvrll  118 (168)
                      +.--..|||+||+.++  ++|+|++++||.+||++|++.+|||+++|+|+|+|++|+|+.+|++|+   +++|+|+++++
T Consensus       100 T~d~~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~Lvlrlr  179 (189)
T 3q3f_A          100 TTDHYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR  179 (189)
T ss_dssp             ESCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCC
T ss_pred             cccccceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcC
Confidence            3334569999999864  889999999999999999999999999999999999999999999998   89999999999


Q ss_pred             CCcc
Q psy2142         119 GGKL  122 (168)
Q Consensus       119 GGKv  122 (168)
                      ||+.
T Consensus       180 GG~~  183 (189)
T 3q3f_A          180 GGGQ  183 (189)
T ss_dssp             CCCC
T ss_pred             CCCc
Confidence            9963

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=99.73  E-value=6.2e-18  Score=132.27  Aligned_cols=81  Identities=23%  Similarity=0.441  Sum_probs=70.0

Q ss_pred             eeEEEeeCCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceE
Q psy2142          40 VAVITMIENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIF  114 (168)
Q Consensus        40 ~~~~~~~~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lv  114 (168)
                      +.++......|+|+||+.++  ++++|++++||.+||++|++.+|||+++|+|+|+|+.|+|+.+|++|+   ++||||+
T Consensus        87 l~l~~~~~gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~  166 (172)
T 3u30_A           87 LHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV  166 (172)
T ss_dssp             EEEEECCCCCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEEC
T ss_pred             eeeeecccccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEE
Confidence            44445567899999998865  889999999999999999999999999999999999999999999998   8999999


Q ss_pred             EEecCC
Q psy2142         115 VPLLGG  120 (168)
Q Consensus       115 vrllGG  120 (168)
                      ++++||
T Consensus       167 ~rlrgG  172 (172)
T 3u30_A          167 LRLRGG  172 (172)
T ss_dssp             C-----
T ss_pred             EecCCC
Confidence            999998

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A

Probab=99.73  E-value=6e-18  Score=128.48  Aligned_cols=73  Identities=15%  Similarity=0.216  Sum_probs=65.0

Q ss_pred             eEEEEEcCC-ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc-C---------CccceEEEec
Q psy2142          50 KRIIVRGQS-NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE-S---------GSIEIFVPLL  118 (168)
Q Consensus        50 MQIfVR~~~-~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~-~---------sTL~Lvvrll  118 (168)
                      |+|+|+..+ +++|+|++++||.+||++|++.+|||+++|+|+|+|++|+|+.||++|+ .         +||||+++ .
T Consensus         3 mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr-~   81 (118)
T 2fnj_B            3 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR-A   81 (118)
T ss_dssp             EEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB-S
T ss_pred             EEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec-C
Confidence            666666665 4899999999999999999999999999999999999999999999998 3         69999999 7


Q ss_pred             CCccc
Q psy2142         119 GGKLL  123 (168)
Q Consensus       119 GGKv~  123 (168)
                      ||...
T Consensus        82 ~g~fe   86 (118)
T 2fnj_B           82 DDTFE   86 (118)
T ss_dssp             SSCBC
T ss_pred             CCcee
Confidence            77533

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.73  E-value=1.2e-17  Score=121.98  Aligned_cols=76  Identities=16%  Similarity=0.252  Sum_probs=71.4

Q ss_pred             CCceEEEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCcc
Q psy2142          47 ENMKRIIVRGQSN-YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGKL  122 (168)
Q Consensus        47 ~~~MQIfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGKv  122 (168)
                      +.+|+|+||..++ +.++|++++||.+||++|++.+|||+++|+|+|+|++|+|+.+|++|+   +++|+|++++.||+.
T Consensus        15 ~~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~~~   94 (106)
T 1wx7_A           15 PHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRAM   94 (106)
T ss_dssp             SSEEEEEEECSSCEEEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCCSC
T ss_pred             CceEEEEEEeCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCCCC
Confidence            5679999999864 889999999999999999999999999999999999999999999998   789999999999874

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A

Probab=99.73  E-value=1.4e-17  Score=115.51  Aligned_cols=70  Identities=24%  Similarity=0.399  Sum_probs=64.2

Q ss_pred             CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhh---cCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEE
Q psy2142          47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASL---EKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVP  116 (168)
Q Consensus        47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~---eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvr  116 (168)
                      +.+|+|+||+.++  ++++|++++||.+||++|++.   +|+|+++|+|+|+|++|+|+.+|++|+   +++|+|+++
T Consensus         3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~   80 (85)
T 2wyq_A            3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVT   80 (85)
T ss_dssp             -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC
T ss_pred             CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEc
Confidence            4689999999754  889999999999999999997   899999999999999999999999998   789998874

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=99.72  E-value=3.1e-17  Score=123.73  Aligned_cols=79  Identities=24%  Similarity=0.447  Sum_probs=71.9

Q ss_pred             EEEeeCCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEE
Q psy2142          42 VITMIENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVP  116 (168)
Q Consensus        42 ~~~~~~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvr  116 (168)
                      ........|+|+|+..++  ++++|++++||.+||++|++..|+|+++|+|+|+|++|+|+.+|++|+   +++|+|+++
T Consensus        69 l~~~~~~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r  148 (152)
T 3b08_A           69 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR  148 (152)
T ss_dssp             EEECCTTCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred             EEeecccccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEe
Confidence            334446789999998865  889999999999999999999999999999999999999999999998   899999999


Q ss_pred             ecCC
Q psy2142         117 LLGG  120 (168)
Q Consensus       117 llGG  120 (168)
                      ++||
T Consensus       149 ~~GG  152 (152)
T 3b08_A          149 LRGG  152 (152)
T ss_dssp             CCC-
T ss_pred             cCCC
Confidence            9998

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}

Probab=99.72  E-value=1.3e-17  Score=124.19  Aligned_cols=75  Identities=24%  Similarity=0.442  Sum_probs=70.8

Q ss_pred             CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCc
Q psy2142          47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGK  121 (168)
Q Consensus        47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGK  121 (168)
                      -.+.||+|+..++  ++++|++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+   +++|+|+++++||+
T Consensus         7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~   86 (114)
T 2kdi_A            7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGS   86 (114)
T ss_dssp             CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSC
T ss_pred             CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCc
Confidence            3578999999875  889999999999999999999999999999999999999999999998   89999999999996

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.71  E-value=3.5e-17  Score=117.40  Aligned_cols=71  Identities=21%  Similarity=0.376  Sum_probs=65.2

Q ss_pred             eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhh---cCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142          50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASL---EKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG  120 (168)
Q Consensus        50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~---eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG  120 (168)
                      |+|+||+.++  ++++|++++||.+||++|++.   +|+|+++|+|+|+|++|+|+.+|++|+   +++|+|+++...|
T Consensus         1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~~   79 (95)
T 1uel_A            1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKA   79 (95)
T ss_dssp             CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCCC
T ss_pred             CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCCC
Confidence            8999999754  889999999999999999998   899999999999999999999999998   8899998876544

>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.71  E-value=1.6e-17  Score=122.77  Aligned_cols=71  Identities=13%  Similarity=0.140  Sum_probs=62.1

Q ss_pred             ceEEEEEcC----CceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142          49 MKRIIVRGQ----SNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG  120 (168)
Q Consensus        49 ~MQIfVR~~----~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG  120 (168)
                      .++|++...    ..++|+|++++||.+||++|++.+|+|+++|+|||+||+|+|+.||++|+   +++| ++++++|.
T Consensus        17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg~   94 (100)
T 1wju_A           17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQS   94 (100)
T ss_dssp             EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCCC
T ss_pred             EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECCC
Confidence            345555542    24899999999999999999999999999999999999999999999999   7899 78888774

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=99.71  E-value=3e-17  Score=128.35  Aligned_cols=76  Identities=25%  Similarity=0.434  Sum_probs=70.0

Q ss_pred             eCCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142          46 IENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG  120 (168)
Q Consensus        46 ~~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG  120 (168)
                      .+..|+|+||+.++  ++++|++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+   +++|+|++++.||
T Consensus        17 ~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg   96 (172)
T 3u30_A           17 RGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   96 (172)
T ss_dssp             --CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred             CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeeccccc
Confidence            36789999998865  889999999999999999999999999999999999999999999998   8999999999887


Q ss_pred             c
Q psy2142         121 K  121 (168)
Q Consensus       121 K  121 (168)
                      .
T Consensus        97 ~   97 (172)
T 3u30_A           97 M   97 (172)
T ss_dssp             E
T ss_pred             c
Confidence            3

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.71  E-value=1e-17  Score=123.08  Aligned_cols=69  Identities=22%  Similarity=0.295  Sum_probs=62.9

Q ss_pred             ceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEe
Q psy2142          49 MKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPL  117 (168)
Q Consensus        49 ~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvrl  117 (168)
                      +|+|+||+.++  ++|+|++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+   +++|+|+++.
T Consensus         1 mm~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~   74 (106)
T 3m62_B            1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQ   74 (106)
T ss_dssp             --CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC
T ss_pred             CEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcC
Confidence            59999999754  889999999999999999999999999999999999999999999998   7899998764

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.70  E-value=2.8e-17  Score=119.64  Aligned_cols=76  Identities=16%  Similarity=0.118  Sum_probs=69.0

Q ss_pred             CceEEEEEcC------CceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCC-CChhhhc---CCccceEEEe
Q psy2142          48 NMKRIIVRGQ------SNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDD-LSISDLE---SGSIEIFVPL  117 (168)
Q Consensus        48 ~~MQIfVR~~------~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~-~tL~dy~---~sTL~Lvvrl  117 (168)
                      .+|+|+|+..      ..++++|++++||.+||++|++.+|||+++|+|+|+|++|+|+ .+|++|+   +++|+|+.++
T Consensus         6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~   85 (102)
T 1v5o_A            6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD   85 (102)
T ss_dssp             CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred             CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECC
Confidence            5699999985      2478999999999999999999999999999999999999988 6899998   7899999999


Q ss_pred             cCCccc
Q psy2142         118 LGGKLL  123 (168)
Q Consensus       118 lGGKv~  123 (168)
                      .||-..
T Consensus        86 ~gg~~~   91 (102)
T 1v5o_A           86 NVGLRT   91 (102)
T ss_dssp             CCCCSS
T ss_pred             CCCCCC
Confidence            998533

>3u5c_e 40S ribosomal protein S30-A, 40S ribosomal protein S29-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_Z* 3j16_E 3u5g_e

Probab=99.69  E-value=5.5e-19  Score=120.44  Aligned_cols=49  Identities=49%  Similarity=0.722  Sum_probs=44.6

Q ss_pred             CCccc-cchhHHHhhhhhhccchhhhhceecceeeEeeecCCc-cCCCCCC
Q psy2142         119 GGKLL-KTEMVEKQEKKKKKTGRAKRRVQYNRRFVNVVQTFGR-RRGPNAN  167 (168)
Q Consensus       119 GGKv~-~~~k~~k~~k~k~~~~r~k~~~~y~~~~~~~~~~~~~-~~~~~~~  167 (168)
                      .|||. |||||+|+||+|+++||||+|++||+||+||+++||+ |++||++
T Consensus        11 AGKVR~QTPKV~k~eKkk~~~gRak~R~~YnrRfvnv~~~~gkrk~~pn~~   61 (63)
T 3u5c_e           11 AGKVKSQTPKVEKTEKPKKPKGRAYKRLLYTRRFVNVTLVNGKRRMNPGPS   61 (63)
T ss_dssp             TTHHHHHSCCCCCCCCCCCCCTHHHHHHHHHHHHTSCCCCSSSCCSSCCCC
T ss_pred             cccccCCCCCCcccccccCCchhHHHHHHhhhhheeecccCCcccCCCCCC
Confidence            45666 9999999999999999999999999999999999984 8899886

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.69  E-value=4.7e-17  Score=123.35  Aligned_cols=77  Identities=14%  Similarity=0.213  Sum_probs=65.9

Q ss_pred             CCceEEEEEcCC-ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCcc
Q psy2142          47 ENMKRIIVRGQS-NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGKL  122 (168)
Q Consensus        47 ~~~MQIfVR~~~-~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGKv  122 (168)
                      ...|+|+||..+ .++++|++++||.+||++|++..|||+++|+|+|+|+.|+|+.+|++|+   +++|+|++++.||+.
T Consensus        30 ~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~~  109 (125)
T 1j8c_A           30 PKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNSS  109 (125)
T ss_dssp             CCCEEEEEECSSCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC------
T ss_pred             CCcEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCCC
Confidence            467999999973 3889999999999999999999999999999999999999999999998   789999999999975


Q ss_pred             c
Q psy2142         123 L  123 (168)
Q Consensus       123 ~  123 (168)
                      -
T Consensus       110 ~  110 (125)
T 1j8c_A          110 S  110 (125)
T ss_dssp             -
T ss_pred             C
Confidence            4

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}

Probab=99.69  E-value=2.3e-17  Score=126.01  Aligned_cols=74  Identities=15%  Similarity=0.167  Sum_probs=66.6

Q ss_pred             CceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhh------hcCC--CCCCeEEEEcCeecCCCCChhhhc---C--Cccc
Q psy2142          48 NMKRIIVRGQSN--YVLECQQNETVSHLKNKVAS------LEKV--ALEDFSLICSGKTLTDDLSISDLE---S--GSIE  112 (168)
Q Consensus        48 ~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~------~eGI--p~~~Q~Liy~GK~LeD~~tL~dy~---~--sTL~  112 (168)
                      ..|+|+||+..+  ++++|++++||.+||++|++      .+|+  |+++|+|||+||+|+|+.||++|+   +  .|+|
T Consensus        16 ~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlh   95 (125)
T 2gow_A           16 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMH   95 (125)
T ss_dssp             TCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEE
T ss_pred             CeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEE
Confidence            459999998754  89999999999999999999      7898  499999999999999999999998   2  3799


Q ss_pred             eEEEecCCc
Q psy2142         113 IFVPLLGGK  121 (168)
Q Consensus       113 LvvrllGGK  121 (168)
                      |++++.++.
T Consensus        96 lv~r~~~~~  104 (125)
T 2gow_A           96 LVARETLPE  104 (125)
T ss_dssp             EEECSCCSS
T ss_pred             EEecCCCCc
Confidence            999998864

>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A

Probab=99.69  E-value=5.2e-17  Score=119.00  Aligned_cols=70  Identities=17%  Similarity=0.423  Sum_probs=61.8

Q ss_pred             CCceEEEEEcCCc--eEE--EEcCCCCHHHHHHHH-hhhcCCCCCCeEEEEcCeecCCCCChhhhc----CCccceEEE
Q psy2142          47 ENMKRIIVRGQSN--YVL--ECQQNETVSHLKNKV-ASLEKVALEDFSLICSGKTLTDDLSISDLE----SGSIEIFVP  116 (168)
Q Consensus        47 ~~~MQIfVR~~~~--~tl--eV~~s~TV~~LK~kI-~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~----~sTL~Lvvr  116 (168)
                      ++.|+|+||+.++  +++  +|++++||.+||++| ++.+|+|+++|+|+|+|++|+|+.+|++|+    +++|+|++.
T Consensus        17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvs   95 (98)
T 4a20_A           17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK   95 (98)
T ss_dssp             -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEEC
T ss_pred             CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEe
Confidence            5789999999865  666  666999999999999 888999999999999999999999999997    568888764

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S

Probab=99.69  E-value=9e-17  Score=109.17  Aligned_cols=66  Identities=20%  Similarity=0.368  Sum_probs=61.7

Q ss_pred             eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEE
Q psy2142          50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVP  116 (168)
Q Consensus        50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvr  116 (168)
                      |+|+||. ++  ++++|++++||.+||++|++..|+|+++|+|+|+|++|+|+.+|++|+   +++|+++.+
T Consensus         5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~   75 (77)
T 2bwf_A            5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS   75 (77)
T ss_dssp             EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred             EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence            9999998 44  889999999999999999999999999999999999999999999998   789998764

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.68  E-value=1.6e-16  Score=115.68  Aligned_cols=73  Identities=16%  Similarity=0.292  Sum_probs=67.4

Q ss_pred             CCceEEEEEcCC-ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecC
Q psy2142          47 ENMKRIIVRGQS-NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLG  119 (168)
Q Consensus        47 ~~~MQIfVR~~~-~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllG  119 (168)
                      ...|+|+||..+ .++++|++++||.+||++|++..|+|+++|+|+|+|++|+|+.+|++|+   +++|+|++++.+
T Consensus        23 ~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~   99 (101)
T 2klc_A           23 PKIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN   99 (101)
T ss_dssp             CCCEEEEEECSSCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred             CCeEEEEEEeCCcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence            567999999974 3889999999999999999999999999999999999999999999998   889999988754

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.67  E-value=1.1e-16  Score=117.22  Aligned_cols=74  Identities=20%  Similarity=0.266  Sum_probs=67.5

Q ss_pred             CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142          47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG  120 (168)
Q Consensus        47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG  120 (168)
                      ...|+|+||+.++  ++++|++++||.+||++|++.+|||+++|+|+|+|++|+|+.+|++|+   +++|+|+++...+
T Consensus        21 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~   99 (106)
T 1ttn_A           21 GYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQ   99 (106)
T ss_dssp             CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSC
T ss_pred             CCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            4569999998754  789999999999999999999999999999999999999999999998   8999999876544

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.67  E-value=3.6e-17  Score=121.63  Aligned_cols=73  Identities=19%  Similarity=0.217  Sum_probs=66.4

Q ss_pred             CceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCC---------------CCeEEEEcCeecC-CCCChhhhc--
Q psy2142          48 NMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVAL---------------EDFSLICSGKTLT-DDLSISDLE--  107 (168)
Q Consensus        48 ~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~---------------~~Q~Liy~GK~Le-D~~tL~dy~--  107 (168)
                      ..|+|+|++.++  ++|+|++++||.+||++|++.+++|+               ++|+|+|+|++|. |+.||++|+  
T Consensus         6 ~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~   85 (105)
T 1v2y_A            6 SGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIR   85 (105)
T ss_dssp             CSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCC
T ss_pred             CcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCC
Confidence            459999999865  89999999999999999999999988               4679999999996 669999999  


Q ss_pred             -CCccceEEEecCC
Q psy2142         108 -SGSIEIFVPLLGG  120 (168)
Q Consensus       108 -~sTL~LvvrllGG  120 (168)
                       +++|||+.+++|.
T Consensus        86 ~g~~l~lv~~lr~~   99 (105)
T 1v2y_A           86 NRDEVSFIKKLGQK   99 (105)
T ss_dssp             SSEEEEEEECSCSC
T ss_pred             CCCEEEEEehhccC
Confidence             8999999999874

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=99.66  E-value=9.2e-17  Score=117.76  Aligned_cols=68  Identities=22%  Similarity=0.408  Sum_probs=58.7

Q ss_pred             CCceEEEEEcCCc----eEEEEcCCCCHHHHHHHHhhh-cCCC-CCCeEEEEcCeecCCCCChhhh--c---CCccceE
Q psy2142          47 ENMKRIIVRGQSN----YVLECQQNETVSHLKNKVASL-EKVA-LEDFSLICSGKTLTDDLSISDL--E---SGSIEIF  114 (168)
Q Consensus        47 ~~~MQIfVR~~~~----~tleV~~s~TV~~LK~kI~~~-eGIp-~~~Q~Liy~GK~LeD~~tL~dy--~---~sTL~Lv  114 (168)
                      ...|+|+||++++    ++|+|++++||.+||++|++. +|+| +++|+|||+|++|+|+.+|++|  +   ++||||+
T Consensus        21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv   99 (99)
T 2kdb_A           21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV   99 (99)
T ss_dssp             --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred             CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence            4679999999753    588999999999999999985 6766 5999999999999999999999  6   6788874

>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*

Probab=99.66  E-value=9.1e-17  Score=122.07  Aligned_cols=71  Identities=13%  Similarity=0.175  Sum_probs=63.2

Q ss_pred             eEEEEEcC--C-ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc----------CCccceEEE
Q psy2142          50 KRIIVRGQ--S-NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE----------SGSIEIFVP  116 (168)
Q Consensus        50 MQIfVR~~--~-~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~----------~sTL~Lvvr  116 (168)
                      |.+||+..  + ++.++|++++||.+||++|++.+|||+++|+|||+|+.|+|+.||++|+          ++||||+++
T Consensus         1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr   80 (118)
T 4ajy_B            1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR   80 (118)
T ss_dssp             CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred             CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence            56677654  3 4778999999999999999999999999999999999999999999998          569999999


Q ss_pred             ecCCc
Q psy2142         117 LLGGK  121 (168)
Q Consensus       117 llGGK  121 (168)
                      . ||.
T Consensus        81 ~-~~~   84 (118)
T 4ajy_B           81 A-DDT   84 (118)
T ss_dssp             C-SSC
T ss_pred             c-CCC
Confidence            7 554

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=99.63  E-value=5.2e-16  Score=119.35  Aligned_cols=68  Identities=18%  Similarity=0.201  Sum_probs=64.1

Q ss_pred             ceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEE-E-cCeecCCCCChhhhc---CCccceEEE
Q psy2142          49 MKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLI-C-SGKTLTDDLSISDLE---SGSIEIFVP  116 (168)
Q Consensus        49 ~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Li-y-~GK~LeD~~tL~dy~---~sTL~Lvvr  116 (168)
                      .|+|+||+.++  ++++|++++||.+||++|++.+|+|+++|+|+ | +|++|+|+.+|++|+   +++|+++++
T Consensus         2 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~   76 (159)
T 3rt3_B            2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVD   76 (159)
T ss_dssp             -CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEEC
T ss_pred             ceEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEcc
Confidence            39999998865  88999999999999999999999999999999 9 899999999999998   899999988

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=99.62  E-value=7.8e-16  Score=116.02  Aligned_cols=71  Identities=27%  Similarity=0.488  Sum_probs=66.9

Q ss_pred             eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142          50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG  120 (168)
Q Consensus        50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG  120 (168)
                      |+|+||+.++  ++++|++++||.+||++|++..|+|+++|+|+|+|++|+|+.+|++|+   +++++++.++.||
T Consensus         1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~   76 (152)
T 3b08_A            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   76 (152)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTC
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeecccc
Confidence            8999998754  889999999999999999999999999999999999999999999998   8999999888776

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A

Probab=99.61  E-value=1.3e-15  Score=113.44  Aligned_cols=67  Identities=13%  Similarity=0.065  Sum_probs=62.7

Q ss_pred             ceEEEEEcCC----ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc----CCccceEE
Q psy2142          49 MKRIIVRGQS----NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE----SGSIEIFV  115 (168)
Q Consensus        49 ~MQIfVR~~~----~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~----~sTL~Lvv  115 (168)
                      .|+|+|++..    .++++|+|++||++||++|++.+|||+++|+|+|+|+.|+|+.||++|+    ++++||++
T Consensus        24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l   98 (105)
T 4dbg_A           24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYL   98 (105)
T ss_dssp             EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEE
T ss_pred             EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEE
Confidence            4999999975    3789999999999999999999999999999999999999999999998    78999987

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A

Probab=99.60  E-value=1.3e-15  Score=108.47  Aligned_cols=69  Identities=25%  Similarity=0.335  Sum_probs=62.1

Q ss_pred             CCceEEEEEcCC-ceEE-EEcCCCCHHHHHHHHhhhcCCCCCCeEEE---EcCeecCCCCChhhhc---CCccceEE
Q psy2142          47 ENMKRIIVRGQS-NYVL-ECQQNETVSHLKNKVASLEKVALEDFSLI---CSGKTLTDDLSISDLE---SGSIEIFV  115 (168)
Q Consensus        47 ~~~MQIfVR~~~-~~tl-eV~~s~TV~~LK~kI~~~eGIp~~~Q~Li---y~GK~LeD~~tL~dy~---~sTL~Lvv  115 (168)
                      +.+|+|+||..+ .++| +|++++||.+||++|++.+|||+++|+|+   |+|++|+|+.+|++|+   +++|+|+.
T Consensus         5 ~~~m~i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~   81 (90)
T 1v5t_A            5 SSGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMG   81 (90)
T ss_dssp             CCSCCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEEC
T ss_pred             CceEEEEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEe
Confidence            457999999643 4889 99999999999999999999999999999   9999999999999998   67777764

>2xzm_X RPS30E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_X 3j0o_X 3j0l_X 3j0p_X 3j0q_X

Probab=99.59  E-value=2.4e-17  Score=117.24  Aligned_cols=51  Identities=37%  Similarity=0.584  Sum_probs=45.8

Q ss_pred             cCCccc-cchhHHHhhhh-hhccchhhhhceecceeeEeee-cCCccCC-CCCCC
Q psy2142         118 LGGKLL-KTEMVEKQEKK-KKKTGRAKRRVQYNRRFVNVVQ-TFGRRRG-PNANS  168 (168)
Q Consensus       118 lGGKv~-~~~k~~k~~k~-k~~~~r~k~~~~y~~~~~~~~~-~~~~~~~-~~~~~  168 (168)
                      ..|||. |||||+|+||+ |+++|||++|++||+||+|+++ +||+|++ ||+++
T Consensus        10 rAGKVR~QTPKV~kqeKk~K~~~GRak~R~~YnrRfv~~~~~~~gkrk~npn~~~   64 (80)
T 2xzm_X           10 KAGKVRKQTPKVEKKDKPRKTPKGRSYKRILYNRRYAPHILATDPKKRKSPNWHA   64 (80)
T ss_dssp             TTTHHHHHSCCCCCCCCSSCCCCSHHHHHHHHHHHSSTTTTTSCSSSCCCTTTCS
T ss_pred             ccccccccCCCcchhhhcccCCchhHHHHHHHHHhhhhhcccccccccCCCCcch
Confidence            457777 99999999998 8999999999999999999998 8999887 88764

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.59  E-value=2.2e-15  Score=107.53  Aligned_cols=70  Identities=20%  Similarity=0.217  Sum_probs=63.2

Q ss_pred             CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCC-CChhhhc---CCccceEEEecC
Q psy2142          47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDD-LSISDLE---SGSIEIFVPLLG  119 (168)
Q Consensus        47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~-~tL~dy~---~sTL~LvvrllG  119 (168)
                      +..|+|+||+.++  ++++|++++||.+||++|++.+   +++|+|+|+|++|+|+ .+|++|+   +++|||+++..+
T Consensus         5 ~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~   80 (95)
T 1wia_A            5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG   80 (95)
T ss_dssp             CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred             CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCC
Confidence            4679999998754  7899999999999999999887   8999999999999999 9999998   789999887654

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.59  E-value=1.3e-15  Score=110.21  Aligned_cols=68  Identities=16%  Similarity=0.225  Sum_probs=61.3

Q ss_pred             CCceEEEEEcCC-ce-EEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEE
Q psy2142          47 ENMKRIIVRGQS-NY-VLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFV  115 (168)
Q Consensus        47 ~~~MQIfVR~~~-~~-tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvv  115 (168)
                      ..+|+|+||..+ .+ .|+|++++||.+||++|++.+|||+++|+|+|.|++|+|+ +|++|+   +++|+|+.
T Consensus         5 ~~~m~i~Vk~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~   77 (96)
T 1wgg_A            5 SSGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMG   77 (96)
T ss_dssp             CCEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCC
T ss_pred             CcEEEEEEEECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEe
Confidence            457999999653 48 5999999999999999999999999999999999999999 999998   77888764

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.59  E-value=3.6e-15  Score=105.77  Aligned_cols=70  Identities=19%  Similarity=0.188  Sum_probs=62.1

Q ss_pred             CCceEEEEEcCC-ceEEEEcCC-----CCHHHHHHHHhhhcCCCCCCeEEEEcCeecCC-CCChhhhc---CCccceEEE
Q psy2142          47 ENMKRIIVRGQS-NYVLECQQN-----ETVSHLKNKVASLEKVALEDFSLICSGKTLTD-DLSISDLE---SGSIEIFVP  116 (168)
Q Consensus        47 ~~~MQIfVR~~~-~~tleV~~s-----~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD-~~tL~dy~---~sTL~Lvvr  116 (168)
                      +.+|+|+|+..+ .++++|+++     +||.+||++|++..|+|+++|+|+|+|++|+| +.+|++|+   +++|+|+..
T Consensus         5 ~~~~~v~Vk~~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~   84 (92)
T 1wxv_A            5 SSGLTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK   84 (92)
T ss_dssp             CSSEEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred             CCeEEEEEEECCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEec
Confidence            467999999864 489999996     99999999999999999999999999999998 56899998   678887753

>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=8e-15  Score=111.38  Aligned_cols=73  Identities=12%  Similarity=0.171  Sum_probs=65.9

Q ss_pred             eeCCceEEEEE-cCC--ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEe
Q psy2142          45 MIENMKRIIVR-GQS--NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPL  117 (168)
Q Consensus        45 ~~~~~MQIfVR-~~~--~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvrl  117 (168)
                      +.++.|.|.|+ .+.  .++++++++.||.+||+++++..++|+++|+|+|+||+|+|++||++|+   +.|+||+++-
T Consensus        11 ~~~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s   89 (118)
T 2daf_A           11 VEDSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFS   89 (118)
T ss_dssp             CCSSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEE
T ss_pred             ccCccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEec
Confidence            34677888888 543  3999999999999999999999999999999999999999999999999   8999999864

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.57  E-value=6.1e-15  Score=108.17  Aligned_cols=72  Identities=18%  Similarity=0.236  Sum_probs=63.3

Q ss_pred             CCceEEEEEcCC-----ceEEE--------EcC-CCCHHHHHHHHhhhc--CCCCCC-eEEEEcCeecCCCCChhhhc--
Q psy2142          47 ENMKRIIVRGQS-----NYVLE--------CQQ-NETVSHLKNKVASLE--KVALED-FSLICSGKTLTDDLSISDLE--  107 (168)
Q Consensus        47 ~~~MQIfVR~~~-----~~tle--------V~~-s~TV~~LK~kI~~~e--GIp~~~-Q~Liy~GK~LeD~~tL~dy~--  107 (168)
                      .+.|+|+||..+     .++|+        |++ ++||.+||++|++.+  |+|+++ |+|+|+|++|+|+.+|++|+  
T Consensus        10 ~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~   89 (107)
T 1x1m_A           10 LSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQ   89 (107)
T ss_dssp             CCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCC
T ss_pred             CCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCC
Confidence            567999999763     47788        445 499999999999999  999999 99999999999999999998  


Q ss_pred             -CCccceEEEec
Q psy2142         108 -SGSIEIFVPLL  118 (168)
Q Consensus       108 -~sTL~Lvvrll  118 (168)
                       +++|||+++..
T Consensus        90 ~g~~i~lv~~~~  101 (107)
T 1x1m_A           90 PGSTVHVLRKSW  101 (107)
T ss_dssp             TTCEEEEEESSC
T ss_pred             CCCEEEEEeCCC
Confidence             78999988653

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.56  E-value=1.2e-15  Score=111.39  Aligned_cols=68  Identities=19%  Similarity=0.346  Sum_probs=60.7

Q ss_pred             ceEEEEEcC-CceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEE
Q psy2142          49 MKRIIVRGQ-SNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVP  116 (168)
Q Consensus        49 ~MQIfVR~~-~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvr  116 (168)
                      .|+|+||.. ..++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+   +++|+|+++
T Consensus        28 ~i~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~   99 (101)
T 3m63_B           28 SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS   99 (101)
T ss_dssp             -CCEEEECSSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCC
T ss_pred             EEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence            377888863 34889999999999999999999999999999999999999999999998   788888753

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*

Probab=99.56  E-value=8.2e-15  Score=126.52  Aligned_cols=72  Identities=24%  Similarity=0.416  Sum_probs=65.5

Q ss_pred             CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEec
Q psy2142          47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLL  118 (168)
Q Consensus        47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvrll  118 (168)
                      +.+|+|+||+.++  ++++|++++||.+||++|++.+|||+++|+|+|+|++|+|+.+|++|+   +++|+|+++++
T Consensus       231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr  307 (307)
T 3ai5_A          231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR  307 (307)
T ss_dssp             CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred             CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence            6789999999754  889999999999999999999999999999999999999999999998   89999999874

>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=4.9e-15  Score=106.01  Aligned_cols=66  Identities=17%  Similarity=0.224  Sum_probs=58.0

Q ss_pred             CceEEEEEcCCc----eEE-EEcCCCCHHHHHHHHhh-hcCCCCCCeEEEEc--CeecCCCCChhhhc---CCccce
Q psy2142          48 NMKRIIVRGQSN----YVL-ECQQNETVSHLKNKVAS-LEKVALEDFSLICS--GKTLTDDLSISDLE---SGSIEI  113 (168)
Q Consensus        48 ~~MQIfVR~~~~----~tl-eV~~s~TV~~LK~kI~~-~eGIp~~~Q~Liy~--GK~LeD~~tL~dy~---~sTL~L  113 (168)
                      .+|+|+|++..+    .+| +|+|++||.+||++|++ .+|+||++|+|+|.  |++|+|+.||++|+   ++||++
T Consensus         9 ~~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~   85 (88)
T 2dzj_A            9 KHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF   85 (88)
T ss_dssp             CCEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred             EEEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence            469999999854    358 99999999999999999 48999999999987  99999999999998   556554

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.53  E-value=8.3e-15  Score=105.52  Aligned_cols=68  Identities=13%  Similarity=0.192  Sum_probs=60.3

Q ss_pred             CCceEEEEEcCC-ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEE
Q psy2142          47 ENMKRIIVRGQS-NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFV  115 (168)
Q Consensus        47 ~~~MQIfVR~~~-~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvv  115 (168)
                      +..|+|+|+... .++|+|++++||.+||++|++.+|||+++|+|+|.|++| |+.+|++|+   +++|+|+.
T Consensus        15 ~~~~~i~Vk~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv~   86 (95)
T 1v86_A           15 KELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVVG   86 (95)
T ss_dssp             CCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEECC
T ss_pred             CceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEEe
Confidence            567999999653 488999999999999999999999999999999999999 455999998   67887764

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.52  E-value=2.6e-14  Score=100.90  Aligned_cols=68  Identities=18%  Similarity=0.288  Sum_probs=58.9

Q ss_pred             CceEEEEEcCC-ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEE
Q psy2142          48 NMKRIIVRGQS-NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFV  115 (168)
Q Consensus        48 ~~MQIfVR~~~-~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvv  115 (168)
                      +.+.+.++..+ .++++|++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+   +++|+|++
T Consensus        11 ~~~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~   82 (85)
T 2kd0_A           11 STIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMA   82 (85)
T ss_dssp             CCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEEC
T ss_pred             CcEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEE
Confidence            44555555443 4889999999999999999999999999999999999999999999998   77887764

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=2.4e-14  Score=105.34  Aligned_cols=70  Identities=14%  Similarity=0.158  Sum_probs=61.7

Q ss_pred             ceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEE--cCeecCCCCChhhhc---CCccceEEEecC
Q psy2142          49 MKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLIC--SGKTLTDDLSISDLE---SGSIEIFVPLLG  119 (168)
Q Consensus        49 ~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy--~GK~LeD~~tL~dy~---~sTL~LvvrllG  119 (168)
                      +|++|++...+  ++|+|++++||.+||++|++.+||||++|+|+|  +|+ |+|+.+|++|+   +++|+|+++-+-
T Consensus         8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~~   84 (100)
T 2dzm_A            8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDLP   84 (100)
T ss_dssp             CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSSC
T ss_pred             ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCCC
Confidence            68888877643  889999999999999999999999999999997  676 99999999998   789999865544

>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}

Probab=99.49  E-value=6.6e-14  Score=101.69  Aligned_cols=69  Identities=13%  Similarity=0.204  Sum_probs=60.7

Q ss_pred             eCCceEEEEEcCC----ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEc--Ce---ec-CCCCChhhhc---CCccc
Q psy2142          46 IENMKRIIVRGQS----NYVLECQQNETVSHLKNKVASLEKVALEDFSLICS--GK---TL-TDDLSISDLE---SGSIE  112 (168)
Q Consensus        46 ~~~~MQIfVR~~~----~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~--GK---~L-eD~~tL~dy~---~sTL~  112 (168)
                      .++.+.|+|+...    .+++++++++||++||++|++.+|||+++|+|+|.  |+   .| +|+.+|++|+   ++||+
T Consensus        12 ~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstih   91 (95)
T 2kjr_A           12 KSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLH   91 (95)
T ss_dssp             CCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEE
T ss_pred             CCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEE
Confidence            4677899999753    37899999999999999999999999999999998  55   45 8999999998   78998


Q ss_pred             eE
Q psy2142         113 IF  114 (168)
Q Consensus       113 Lv  114 (168)
                      |+
T Consensus        92 lv   93 (95)
T 2kjr_A           92 VV   93 (95)
T ss_dssp             EE
T ss_pred             EE
Confidence            85

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=99.47  E-value=3.6e-14  Score=124.95  Aligned_cols=76  Identities=22%  Similarity=0.363  Sum_probs=68.6

Q ss_pred             CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhh---hcCCCCCCeEEEEcCeecCCCCChhhhc---CCcc-ceEEEe
Q psy2142          47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVAS---LEKVALEDFSLICSGKTLTDDLSISDLE---SGSI-EIFVPL  117 (168)
Q Consensus        47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~---~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL-~Lvvrl  117 (168)
                      ...|+|+||+.++  ++|+|++++||.+||++|++   .+|||+++|+|+|+||+|+|+.+|++|+   +++| +++.++
T Consensus         5 ~~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~   84 (368)
T 1oqy_A            5 SSAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT   84 (368)
T ss_dssp             -CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECC
T ss_pred             CceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecC
Confidence            5679999999854  88999999999999999999   6789999999999999999999999998   7888 888888


Q ss_pred             cCCcc
Q psy2142         118 LGGKL  122 (168)
Q Consensus       118 lGGKv  122 (168)
                      .||+.
T Consensus        85 ~~~~~   89 (368)
T 1oqy_A           85 KAGQG   89 (368)
T ss_dssp             CSSSC
T ss_pred             CCCCC
Confidence            88764

>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.46  E-value=6.1e-14  Score=103.07  Aligned_cols=68  Identities=18%  Similarity=0.220  Sum_probs=61.8

Q ss_pred             CceEEEEEcCCc-eEEEEc-CCCCHHHHHHHHhhhcCCCCCCeEEEEcCe-----------e----cCCCCChhhhc---
Q psy2142          48 NMKRIIVRGQSN-YVLECQ-QNETVSHLKNKVASLEKVALEDFSLICSGK-----------T----LTDDLSISDLE---  107 (168)
Q Consensus        48 ~~MQIfVR~~~~-~tleV~-~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK-----------~----LeD~~tL~dy~---  107 (168)
                      +.|+|+||+.++ +.|+|+ +++||.+||++|++.+|||+++|+|+|.|+           .    ++|+.+|++|+   
T Consensus         6 ~~M~irvrs~~G~~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~   85 (107)
T 1wf9_A            6 SGTMLRVRSRDGLERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAH   85 (107)
T ss_dssp             CCEEEEEECSSCEEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCT
T ss_pred             CeEEEEEECCCCCEEEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCC
Confidence            349999999987 779999 999999999999999999999999999998           4    58899999998   


Q ss_pred             CCccceEE
Q psy2142         108 SGSIEIFV  115 (168)
Q Consensus       108 ~sTL~Lvv  115 (168)
                      +++|||+.
T Consensus        86 G~~L~l~~   93 (107)
T 1wf9_A           86 GSMVYLAY   93 (107)
T ss_dssp             TCEEECCC
T ss_pred             CCEEEEEe
Confidence            78988875

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.43  E-value=2.5e-13  Score=98.44  Aligned_cols=75  Identities=16%  Similarity=0.332  Sum_probs=70.3

Q ss_pred             CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCc
Q psy2142          47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGK  121 (168)
Q Consensus        47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGK  121 (168)
                      ...|+|+|++.++  +.+.|.+++++..|++.+++.+|+|+++|+|+|.|+.|.++.|+++|+   +++||+++.++||.
T Consensus         5 ~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG~   84 (94)
T 2io1_B            5 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV   84 (94)
T ss_dssp             -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEESC
T ss_pred             CCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence            4569999999876  778999999999999999999999999999999999999999999998   89999999999995

>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}

Probab=99.43  E-value=2.9e-13  Score=96.54  Aligned_cols=56  Identities=14%  Similarity=0.078  Sum_probs=52.8

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEE-------cCeecCCCCChhhhc---CCccceEE
Q psy2142          60 YVLECQQNETVSHLKNKVASLEKVALEDFSLIC-------SGKTLTDDLSISDLE---SGSIEIFV  115 (168)
Q Consensus        60 ~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy-------~GK~LeD~~tL~dy~---~sTL~Lvv  115 (168)
                      +.+.+++++||.+||++|+..+|||+++|+|+|       .|+.|+|+.+|++|+   ++||||+-
T Consensus        17 ~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd   82 (86)
T 4b6w_A           17 PEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVD   82 (86)
T ss_dssp             EEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEE
T ss_pred             EEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEe
Confidence            578999999999999999999999999999996       699999999999999   89999985

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.43  E-value=3.4e-13  Score=98.48  Aligned_cols=68  Identities=9%  Similarity=0.074  Sum_probs=59.4

Q ss_pred             CCceEEEEEcCC----ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCe---e----cCCCCChhhhc---CCccc
Q psy2142          47 ENMKRIIVRGQS----NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGK---T----LTDDLSISDLE---SGSIE  112 (168)
Q Consensus        47 ~~~MQIfVR~~~----~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK---~----LeD~~tL~dy~---~sTL~  112 (168)
                      ++.+.|+|+...    .+++++++++||++||++|++.+|||+++|+|+|.|+   +    ++|+.+|++|+   +++|+
T Consensus        12 ~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ih   91 (97)
T 2kj6_A           12 DDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLH   91 (97)
T ss_dssp             CCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEE
T ss_pred             CceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEE
Confidence            456788888642    3889999999999999999999999999999999983   3    48999999998   78998


Q ss_pred             eE
Q psy2142         113 IF  114 (168)
Q Consensus       113 Lv  114 (168)
                      |+
T Consensus        92 lv   93 (97)
T 2kj6_A           92 II   93 (97)
T ss_dssp             EE
T ss_pred             EE
Confidence            86

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.41  E-value=3.3e-13  Score=96.81  Aligned_cols=67  Identities=12%  Similarity=0.074  Sum_probs=58.7

Q ss_pred             ceEEEEEcCC---ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcC---ee----cCCCCChhhhc---CCccceEE
Q psy2142          49 MKRIIVRGQS---NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSG---KT----LTDDLSISDLE---SGSIEIFV  115 (168)
Q Consensus        49 ~MQIfVR~~~---~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~G---K~----LeD~~tL~dy~---~sTL~Lvv  115 (168)
                      .+.|+|+...   .+++++++++||.+||++|++.+|||+++|+|+|.|   ++    |+|+.+|++|+   +++|||+-
T Consensus         7 ~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d   86 (95)
T 1v6e_A            7 GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID   86 (95)
T ss_dssp             CEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred             EEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence            4788888654   388999999999999999999999999999999987   54    58999999998   78998864

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=99.37  E-value=2.1e-12  Score=93.24  Aligned_cols=75  Identities=16%  Similarity=0.332  Sum_probs=70.2

Q ss_pred             CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCc
Q psy2142          47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGK  121 (168)
Q Consensus        47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGK  121 (168)
                      ...|+|.|++.++  +.+.|.+++++..|++..++..|+|+++++|+|.|+.|.++.|+++|+   +++|++++.+.||.
T Consensus         3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg~   82 (91)
T 2io0_B            3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV   82 (91)
T ss_dssp             -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCCC
T ss_pred             CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCc
Confidence            5679999999875  778999999999999999999999999999999999999999999998   88999999999996

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1

Probab=99.32  E-value=3.3e-12  Score=95.86  Aligned_cols=68  Identities=10%  Similarity=0.110  Sum_probs=59.8

Q ss_pred             CceEEEEEcCC---ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcC---ee----cCCCCChhhhc---CCccceE
Q psy2142          48 NMKRIIVRGQS---NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSG---KT----LTDDLSISDLE---SGSIEIF  114 (168)
Q Consensus        48 ~~MQIfVR~~~---~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~G---K~----LeD~~tL~dy~---~sTL~Lv  114 (168)
                      ..+.|+|+...   .+++++++++||++||++|+..+|||+++|+|+|.|   +.    ++|+.+|++|+   +++|||+
T Consensus         5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvv   84 (122)
T 1t0y_A            5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAV   84 (122)
T ss_dssp             CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEE
T ss_pred             CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEE
Confidence            35888888764   388999999999999999999999999999999987   43    48999999998   7899988


Q ss_pred             E
Q psy2142         115 V  115 (168)
Q Consensus       115 v  115 (168)
                      .
T Consensus        85 d   85 (122)
T 1t0y_A           85 D   85 (122)
T ss_dssp             E
T ss_pred             e
Confidence            5

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}

Probab=99.32  E-value=1.2e-12  Score=92.27  Aligned_cols=66  Identities=14%  Similarity=0.267  Sum_probs=58.4

Q ss_pred             eEEEEEcCCc-eEEE-EcCCCCHHHHHHHHhhhcCCCCCCeEEEEcC--eecC---CCCChhhhc---CCccceEE
Q psy2142          50 KRIIVRGQSN-YVLE-CQQNETVSHLKNKVASLEKVALEDFSLICSG--KTLT---DDLSISDLE---SGSIEIFV  115 (168)
Q Consensus        50 MQIfVR~~~~-~tle-V~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~G--K~Le---D~~tL~dy~---~sTL~Lvv  115 (168)
                      |+|+||+.+| +.++ +++++||.+||++|++..|||+++|+|+|++  ++|+   |+.+|++|+   +++|+|..
T Consensus         1 m~i~vr~~~G~~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~   76 (86)
T 2kzr_A            1 WRVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEE   76 (86)
T ss_dssp             CCEEEEETTEEEEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCC
T ss_pred             CEEEEEcCCCCEEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEe
Confidence            8999999987 5687 9999999999999999999999999999974  8884   688999998   67777753

>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A

Probab=99.29  E-value=7.7e-12  Score=90.23  Aligned_cols=74  Identities=16%  Similarity=0.344  Sum_probs=67.1

Q ss_pred             CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142          47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG  120 (168)
Q Consensus        47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG  120 (168)
                      ...|+|+|++.++  +.+.|.+++++..|++.+++..|+++++++|+|.|+.|.++.|+++|+   +++||+++.++||
T Consensus        15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG   93 (93)
T 2d07_B           15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG   93 (93)
T ss_dssp             CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred             CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccCC
Confidence            4579999999876  778999999999999999999999999999999999999999999998   8899999999998

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=99.25  E-value=4.8e-12  Score=109.28  Aligned_cols=71  Identities=24%  Similarity=0.316  Sum_probs=62.9

Q ss_pred             CCceEEEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEE---EcCeecCCCCChhhhc---CCccceEEEe
Q psy2142          47 ENMKRIIVRGQSN-YVLECQQNETVSHLKNKVASLEKVALEDFSLI---CSGKTLTDDLSISDLE---SGSIEIFVPL  117 (168)
Q Consensus        47 ~~~MQIfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Li---y~GK~LeD~~tL~dy~---~sTL~Lvvrl  117 (168)
                      ...|.|.||..+. ++|+|++++||++||++|++.+||||++|+|+   |+|++|+|+.+|++|+   +++|+|+...
T Consensus         3 ~~~i~i~Vk~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~   80 (320)
T 3shq_A            3 VKEVVVIVKWSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGST   80 (320)
T ss_dssp             -CEEEEEEEETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCC
T ss_pred             CceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccc
Confidence            4678999997643 89999999999999999999999999999999   8999999999999998   7888887543

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.23  E-value=1.5e-11  Score=90.93  Aligned_cols=75  Identities=15%  Similarity=0.309  Sum_probs=70.5

Q ss_pred             CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCc
Q psy2142          47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGK  121 (168)
Q Consensus        47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGK  121 (168)
                      ...|+|+|++.++  +.+.|.+++++..|++.+++..|+++++++|+|.|+.|.++.|+++|+   +++||+++.+.||.
T Consensus        22 ~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG~  101 (104)
T 1wz0_A           22 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSGP  101 (104)
T ss_dssp             SCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCCS
T ss_pred             CCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence            4579999999876  778999999999999999999999999999999999999999999998   88999999999995

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=99.21  E-value=1.9e-11  Score=91.34  Aligned_cols=77  Identities=10%  Similarity=0.212  Sum_probs=69.9

Q ss_pred             CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCc
Q psy2142          47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGK  121 (168)
Q Consensus        47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGK  121 (168)
                      ...|+|+|++.++  +.+.|.+++++..|++..++..|+|+++|+|+|.|+.|.++.|+++|+   +++|++++.+.||-
T Consensus        24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg~  103 (110)
T 2k8h_A           24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGGL  103 (110)
T ss_dssp             CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC-
T ss_pred             CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCcc
Confidence            4569999999865  789999999999999999999999999999999999999999999998   78999999999996


Q ss_pred             cc
Q psy2142         122 LL  123 (168)
Q Consensus       122 v~  123 (168)
                      -|
T Consensus       104 ~~  105 (110)
T 2k8h_A          104 EH  105 (110)
T ss_dssp             --
T ss_pred             cc
Confidence            43

>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1

Probab=99.18  E-value=4.6e-11  Score=88.76  Aligned_cols=73  Identities=16%  Similarity=0.306  Sum_probs=66.0

Q ss_pred             CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142          47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG  120 (168)
Q Consensus        47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG  120 (168)
                      ...|+|+|++ ++  +.+.|.+++++..|++..++..|+++++++|+|.|+.|.++.|.++|+   +++|++++.++||
T Consensus        29 ~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG  106 (106)
T 2eke_C           29 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG  106 (106)
T ss_dssp             CSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred             CCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence            4569999999 76  678999999999999999999999999999999999999999999998   8899999999997

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=99.18  E-value=6.1e-11  Score=81.28  Aligned_cols=65  Identities=15%  Similarity=0.338  Sum_probs=60.9

Q ss_pred             eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceE
Q psy2142          50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIF  114 (168)
Q Consensus        50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lv  114 (168)
                      |+|.|++.++  +.+.|.+++++..|++..++..|+|+++++|+|.|+.|.++.|.++|+   +++|++.
T Consensus         2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~   71 (72)
T 1wm3_A            2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence            7999999866  778999999999999999999999999999999999999999999998   7888875

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=99.09  E-value=4.1e-10  Score=78.71  Aligned_cols=68  Identities=16%  Similarity=0.248  Sum_probs=62.6

Q ss_pred             CCceEEEEEcCCc---eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceE
Q psy2142          47 ENMKRIIVRGQSN---YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIF  114 (168)
Q Consensus        47 ~~~MQIfVR~~~~---~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lv  114 (168)
                      ...|+|+|++.++   +.+.|.+++++..|++..++..|+++++++|+|.|+.|.++.|+++|+   +++||+.
T Consensus         5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~   78 (79)
T 3a4r_A            5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW   78 (79)
T ss_dssp             CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred             CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence            4669999999865   578999999999999999999999999999999999999999999998   7888874

>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.82  E-value=1.3e-08  Score=72.81  Aligned_cols=69  Identities=13%  Similarity=0.135  Sum_probs=57.5

Q ss_pred             CCceEEEEEcC---Cc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcC-------eec-CCCCChhhhc---CCc
Q psy2142          47 ENMKRIIVRGQ---SN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSG-------KTL-TDDLSISDLE---SGS  110 (168)
Q Consensus        47 ~~~MQIfVR~~---~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~G-------K~L-eD~~tL~dy~---~sT  110 (168)
                      ...+.|+|+..   ++  +.+.+.+++||++||.+|+...|+|+..|+|+|.+       ..| +|..+|++|+   +++
T Consensus         7 ~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~   86 (97)
T 1wjn_A            7 GQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDC   86 (97)
T ss_dssp             SCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCE
T ss_pred             CccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCE
Confidence            45678888853   33  77899999999999999999999999999999973       235 6678899998   789


Q ss_pred             cceEE
Q psy2142         111 IEIFV  115 (168)
Q Consensus       111 L~Lvv  115 (168)
                      |++..
T Consensus        87 I~V~d   91 (97)
T 1wjn_A           87 LLVRW   91 (97)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            98865

>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1

Probab=98.65  E-value=1.1e-07  Score=71.61  Aligned_cols=72  Identities=17%  Similarity=0.349  Sum_probs=65.8

Q ss_pred             CceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecC
Q psy2142          48 NMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLG  119 (168)
Q Consensus        48 ~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllG  119 (168)
                      ..++|.|+++++  ..+.|.+++++..|++..+++.|+++.+++++|.|+.|.++.|.++++   +++|++.+.-.|
T Consensus        39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~G  115 (115)
T 3kyd_D           39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQCG  115 (115)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCCC
T ss_pred             CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeeccC
Confidence            568999999876  668999999999999999999999999999999999999999999998   889999886554

>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}

Probab=98.58  E-value=1.3e-07  Score=77.15  Aligned_cols=74  Identities=16%  Similarity=0.297  Sum_probs=68.1

Q ss_pred             CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCc
Q psy2142          47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGK  121 (168)
Q Consensus        47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGK  121 (168)
                      ...++|.|+. ++  ..+.|.+++++..|+...+++.|+|+.+++++|.|+.|.++.|.++++   +++|+++..++||.
T Consensus        27 ~~~I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~  105 (200)
T 3pge_A           27 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGG  105 (200)
T ss_dssp             CCCEEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC
T ss_pred             CCeEEEEEec-CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCc
Confidence            4558999975 44  778999999999999999999999999999999999999999999998   89999999999985

>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}

Probab=98.45  E-value=3.2e-07  Score=66.92  Aligned_cols=48  Identities=15%  Similarity=0.138  Sum_probs=42.2

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecC--CCCChhhhc
Q psy2142          60 YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLT--DDLSISDLE  107 (168)
Q Consensus        60 ~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~Le--D~~tL~dy~  107 (168)
                      +.+.+.+++||..||++|++++|||+++|+|+|.|+.|.  .......|.
T Consensus        26 h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p   75 (94)
T 4efo_A           26 HKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFP   75 (94)
T ss_dssp             EEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSC
T ss_pred             EEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCC
Confidence            789999999999999999999999999999999998764  445555666

>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}

Probab=98.40  E-value=3.8e-07  Score=74.76  Aligned_cols=75  Identities=16%  Similarity=0.286  Sum_probs=68.3

Q ss_pred             CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCc
Q psy2142          47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGK  121 (168)
Q Consensus        47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGK  121 (168)
                      ...++|.|+. ++  +.+.|.+++++..|++..+++.|+++.+++++|.|+.|.++.|.++++   +++|++++...||.
T Consensus        55 ~e~InLKVk~-dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG~  133 (207)
T 3tix_A           55 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGGL  133 (207)
T ss_dssp             CCEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTTG
T ss_pred             CCcEEEEEec-CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence            3458888974 44  778999999999999999999999999999999999999999999998   88999999999996


Q ss_pred             c
Q psy2142         122 L  122 (168)
Q Consensus       122 v  122 (168)
                      .
T Consensus       134 ~  134 (207)
T 3tix_A          134 P  134 (207)
T ss_dssp             G
T ss_pred             c
Confidence            3

>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}

Probab=98.33  E-value=2.9e-07  Score=64.53  Aligned_cols=67  Identities=18%  Similarity=0.165  Sum_probs=57.1

Q ss_pred             CceEEEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCee-----cCCCCChhhhc---CCccceE
Q psy2142          48 NMKRIIVRGQSN-YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKT-----LTDDLSISDLE---SGSIEIF  114 (168)
Q Consensus        48 ~~MQIfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~-----LeD~~tL~dy~---~sTL~Lv  114 (168)
                      ..|.|-||+.+| +.|+|++++|+.+|+++|++..+++++.|.|+++-.+     +.++.+|+++|   |++|.+.
T Consensus         3 ~~m~lRvrs~~G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~   78 (80)
T 2pjh_A            3 ESIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF   78 (80)
T ss_dssp             CCCCCEEECSSEEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred             CcEEEEEECCCCCEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence            458899999987 7899999999999999999999999999999887766     45778899998   6777664

>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}

Probab=98.28  E-value=1e-07  Score=79.02  Aligned_cols=75  Identities=16%  Similarity=0.283  Sum_probs=1.6

Q ss_pred             eCCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142          46 IENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG  120 (168)
Q Consensus        46 ~~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG  120 (168)
                      ....|+|.| +.++  ..+.|.+++.+..|++..++..|+++++++++|.|+.|.++.|.++++   +++|+++....||
T Consensus        18 p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG   96 (227)
T 3v7o_A           18 PETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG   96 (227)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             CCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCC
Confidence            356699999 7665  668999999999999999999999999999999999999999999998   8999999999999


Q ss_pred             c
Q psy2142         121 K  121 (168)
Q Consensus       121 K  121 (168)
                      .
T Consensus        97 ~   97 (227)
T 3v7o_A           97 L   97 (227)
T ss_dssp             C
T ss_pred             c
Confidence            6

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=97.85  E-value=3.1e-05  Score=62.64  Aligned_cols=80  Identities=16%  Similarity=0.248  Sum_probs=68.4

Q ss_pred             EEEeeCCceEEEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEe
Q psy2142          42 VITMIENMKRIIVRGQSN-YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPL  117 (168)
Q Consensus        42 ~~~~~~~~MQIfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvrl  117 (168)
                      ........+.|.|++.++ ..+.+..++.+..|++..+++.|+++++++++|.|+.+.++.|..++.   +++|++....
T Consensus        14 ~~~~~~~~i~ikv~~~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq   93 (209)
T 3uf8_A           14 PEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ   93 (209)
T ss_dssp             ----CCSEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSC
T ss_pred             ceeCCCCcEEEEEEcCCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhccc
Confidence            334446778999988433 578999999999999999999999999999999999999999999986   7899999999


Q ss_pred             cCCc
Q psy2142         118 LGGK  121 (168)
Q Consensus       118 lGGK  121 (168)
                      .||.
T Consensus        94 ~Gg~   97 (209)
T 3uf8_A           94 IGGS   97 (209)
T ss_dssp             TTCC
T ss_pred             cccc
Confidence            9985

>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}

Probab=97.69  E-value=5.5e-06  Score=72.91  Aligned_cols=78  Identities=17%  Similarity=0.258  Sum_probs=1.4

Q ss_pred             eCCceEEEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCc
Q psy2142          46 IENMKRIIVRGQSN-YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGK  121 (168)
Q Consensus        46 ~~~~MQIfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGK  121 (168)
                      ....++|.|++.+. ..+.|..+++...|++..++..|+++++++++|.|+.|.++.|.++++   +++|++.....||.
T Consensus        18 ~~~~I~LKV~~~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g~~   97 (360)
T 3ix6_A           18 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGM   97 (360)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             CCCeEEEEEecCCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCchH
Confidence            34568888887433 678999999999999999999999999999999999999999999998   89999999999996


Q ss_pred             cc
Q psy2142         122 LL  123 (168)
Q Consensus       122 v~  123 (168)
                      ..
T Consensus        98 ~~   99 (360)
T 3ix6_A           98 RT   99 (360)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}

Probab=97.60  E-value=0.00033  Score=50.92  Aligned_cols=68  Identities=15%  Similarity=0.245  Sum_probs=59.8

Q ss_pred             CCceEEEEEcCCc---eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceE
Q psy2142          47 ENMKRIIVRGQSN---YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIF  114 (168)
Q Consensus        47 ~~~MQIfVR~~~~---~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lv  114 (168)
                      ...+.|.|++.++   +.+.|.+++....|...-++..|+++...+++|.|..|..+.|.++++   +.+|++.
T Consensus        23 ~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~   96 (97)
T 2jxx_A           23 SQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW   96 (97)
T ss_dssp             CSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred             CCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence            3557888888765   468999999999999999999999999999999999999999999998   6677653

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=97.59  E-value=0.00037  Score=49.56  Aligned_cols=67  Identities=15%  Similarity=0.266  Sum_probs=57.9

Q ss_pred             ceEEEEEcCC--ceEEEEcCCCCHHHHHHHHhhhcCCCCC-CeEEEEcCeecCCCCChhhhc---CCccceEE
Q psy2142          49 MKRIIVRGQS--NYVLECQQNETVSHLKNKVASLEKVALE-DFSLICSGKTLTDDLSISDLE---SGSIEIFV  115 (168)
Q Consensus        49 ~MQIfVR~~~--~~tleV~~s~TV~~LK~kI~~~eGIp~~-~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvv  115 (168)
                      .+.+.+|...  .+.+.|.++.+|.+|-..-..+.|||++ ..+|.|.|..|..++++.+|+   +..|++++
T Consensus         9 ~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL   81 (82)
T 3goe_A            9 LITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL   81 (82)
T ss_dssp             EEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred             HHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence            3566777764  3889999999999999999999999999 999999999999999999998   56666654

>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A

Probab=97.15  E-value=6.3e-05  Score=65.29  Aligned_cols=76  Identities=17%  Similarity=0.290  Sum_probs=0.0

Q ss_pred             CceEEEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCccc
Q psy2142          48 NMKRIIVRGQSN-YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGKLL  123 (168)
Q Consensus        48 ~~MQIfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGKv~  123 (168)
                      ..+.|.|++.+. ..+.|..+++...|++..+++.|+++.+++++|.|+.|.++.|.++++   +++|++.+...||...
T Consensus        29 ~~i~lkv~~~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~n~  108 (389)
T 4da1_A           29 THINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGENL  108 (389)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcEEEEEecCCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeecccccccc
Confidence            345666665322 568999999999999999999999999999999999999999999998   8999999999999744

>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2

Probab=96.98  E-value=0.0017  Score=46.85  Aligned_cols=71  Identities=7%  Similarity=0.055  Sum_probs=57.7

Q ss_pred             eeCCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEE
Q psy2142          45 MIENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFV  115 (168)
Q Consensus        45 ~~~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvv  115 (168)
                      +....|.|.|-..++  .++.|.|+.++.+|=++..+..|+++++-.|.|++++|+=..++.--|   +++|.++.
T Consensus         5 ~~~~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~   80 (90)
T 2al3_A            5 AGGGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVP   80 (90)
T ss_dssp             -----CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEEC
T ss_pred             ccCCccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEE
Confidence            446778999998765  889999999999999999999999999999999999997777766665   77887764

>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}

Probab=96.71  E-value=0.0095  Score=43.37  Aligned_cols=68  Identities=15%  Similarity=0.204  Sum_probs=60.0

Q ss_pred             CceEEEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEE
Q psy2142          48 NMKRIIVRGQSN-YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFV  115 (168)
Q Consensus        48 ~~MQIfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvv  115 (168)
                      ..+.|.|+..++ .-+.+..++-..-|...-+++.|++++..+++|.|..+.+++|-.+++   +.+|++++
T Consensus        20 ~~IniKV~~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~   91 (95)
T 2l76_A           20 RLFPLKIRCRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVV   91 (95)
T ss_dssp             CCEEEEEECSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEE
T ss_pred             CeEEEEEEcCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEE
Confidence            448888886444 668999999999999999999999999999999999999999999998   77888765

>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2

Probab=96.66  E-value=0.012  Score=39.37  Aligned_cols=66  Identities=18%  Similarity=0.323  Sum_probs=52.1

Q ss_pred             ceEEEEEcCC-ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhcCCccceEEEecCC
Q psy2142          49 MKRIIVRGQS-NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLESGSIEIFVPLLGG  120 (168)
Q Consensus        49 ~MQIfVR~~~-~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~~sTL~LvvrllGG  120 (168)
                      .|+|.|.+.. ..++++.+..||.+|.+++    ++++....+..+|..+..+..|.+  ++.+.++..+-||
T Consensus         4 ~m~i~vNg~~~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~~L~~--gD~V~ii~~V~GG   70 (70)
T 1ryj_A            4 GMKFTVITDDGKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEEEIFD--GDIIEVIRVIYGG   70 (70)
T ss_dssp             CEEEEEEETTEEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTSBCCT--TCEEEEEECTTCC
T ss_pred             eEEEEEeCccCceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcccCCC--CCEEEEEeccccC
Confidence            5999999986 4778998889999999876    567778888899999987664332  6788877776665

>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}

Probab=96.07  E-value=0.0071  Score=46.06  Aligned_cols=36  Identities=8%  Similarity=0.115  Sum_probs=32.7

Q ss_pred             EEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCC
Q psy2142          51 RIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALE   86 (168)
Q Consensus        51 QIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~   86 (168)
                      .|.|+.+++  .++.|+.+.+|.+++..|+...||+..
T Consensus        13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~   50 (128)
T 2kc2_A           13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNH   50 (128)
T ss_dssp             EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCC
T ss_pred             cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCc
Confidence            688999987  789999999999999999999999754

>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A

Probab=95.96  E-value=0.026  Score=38.86  Aligned_cols=60  Identities=15%  Similarity=0.269  Sum_probs=49.4

Q ss_pred             CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEE--EcCeecC---CCCChhhhc
Q psy2142          47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLI--CSGKTLT---DDLSISDLE  107 (168)
Q Consensus        47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Li--y~GK~Le---D~~tL~dy~  107 (168)
                      +....|-||.++|  ..-....++||.+|.+-|.. .+.++....|+  |-.+.|.   .+.||.++|
T Consensus         5 ~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~g   71 (84)
T 3qx1_A            5 EPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVK   71 (84)
T ss_dssp             CCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTT
T ss_pred             CCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCC
Confidence            5567899999987  44588999999999999997 67788889998  5578883   467899998

>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}

Probab=94.96  E-value=0.055  Score=36.96  Aligned_cols=64  Identities=13%  Similarity=0.308  Sum_probs=49.2

Q ss_pred             eEEEEEcCC--ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhcCCccceEEEecCC
Q psy2142          50 KRIIVRGQS--NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLESGSIEIFVPLLGG  120 (168)
Q Consensus        50 MQIfVR~~~--~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~~sTL~LvvrllGG  120 (168)
                      |+|.|+...  ...+++.+..||++|=+    ..|||++.-.+.-+|+++..+..+ +  ++++.++-..-||
T Consensus         1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d~~l-~--GD~VeIv~~V~G~   66 (74)
T 2l32_A            1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPEDQSV-E--VDRVKVLRLIKGG   66 (74)
T ss_dssp             CEEEEECSSSSEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTTSSS-C--CCCEEECSSCSCC
T ss_pred             CEEEEEEeCccceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHHHCC-C--CCEEEEEEeeccc
Confidence            788888763  25589999999998865    578999999899999999776644 2  7777766554555

>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}

Probab=94.63  E-value=0.21  Score=37.17  Aligned_cols=57  Identities=12%  Similarity=0.170  Sum_probs=38.6

Q ss_pred             ceEEEEcCCCCHHHHHHHHhhh--cCCCC------CCeEEEE----cCeecCCCC-------------Chhhhc---CCc
Q psy2142          59 NYVLECQQNETVSHLKNKVASL--EKVAL------EDFSLIC----SGKTLTDDL-------------SISDLE---SGS  110 (168)
Q Consensus        59 ~~tleV~~s~TV~~LK~kI~~~--eGIp~------~~Q~Liy----~GK~LeD~~-------------tL~dy~---~sT  110 (168)
                      .+.+.|-..|||.++|++|-++  .|.|.      ++.-|-+    .|++|.|++             ||+.|+   +++
T Consensus        25 ~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dgat  104 (111)
T 4e71_A           25 AIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDGAT  104 (111)
T ss_dssp             CEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTTCE
T ss_pred             ceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCCCE
Confidence            3778888999999999999877  45554      4666766    356777743             566676   667


Q ss_pred             cceEE
Q psy2142         111 IEIFV  115 (168)
Q Consensus       111 L~Lvv  115 (168)
                      +-|+.
T Consensus       105 l~l~~  109 (111)
T 4e71_A          105 LILSK  109 (111)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            76654

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=94.09  E-value=0.13  Score=36.42  Aligned_cols=48  Identities=17%  Similarity=0.140  Sum_probs=43.4

Q ss_pred             CceEEEEEcCCceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCe
Q psy2142          48 NMKRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGK   95 (168)
Q Consensus        48 ~~MQIfVR~~~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK   95 (168)
                      ..|.|.|....++.|.|.++-+..+|.++|+++.++|++...|.|.-.
T Consensus         4 ~~~~VKV~~~~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~   51 (83)
T 1oey_A            4 MAYTLKVHYKYTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR   51 (83)
T ss_dssp             SCEEEEEESSSEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred             CcEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence            347888888888999999999999999999999999999999999763

>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2

Probab=93.99  E-value=0.21  Score=37.18  Aligned_cols=60  Identities=17%  Similarity=0.255  Sum_probs=50.0

Q ss_pred             CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEE--EcCeec--CC-CCChhhhc
Q psy2142          47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLI--CSGKTL--TD-DLSISDLE  107 (168)
Q Consensus        47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Li--y~GK~L--eD-~~tL~dy~  107 (168)
                      +....|-||.++|  ..-....++||.+|.+-|... +.+.....|+  |-.+.|  +| +.||.+++
T Consensus        41 ~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~g  107 (124)
T 1wj4_A           41 GPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAG  107 (124)
T ss_dssp             SCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTT
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCC
Confidence            4568999999987  456889999999999999876 7777888887  568889  34 68899998

>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1

Probab=93.63  E-value=0.32  Score=34.12  Aligned_cols=71  Identities=17%  Similarity=0.306  Sum_probs=46.8

Q ss_pred             CceEEEEEcCC---------ceEEEEcCCCCHHHHHHHHhhhcC-C----------CCCCeEEEEcCeecCCCCChhhhc
Q psy2142          48 NMKRIIVRGQS---------NYVLECQQNETVSHLKNKVASLEK-V----------ALEDFSLICSGKTLTDDLSISDLE  107 (168)
Q Consensus        48 ~~MQIfVR~~~---------~~tleV~~s~TV~~LK~kI~~~eG-I----------p~~~Q~Liy~GK~LeD~~tL~dy~  107 (168)
                      ..|+|.|+...         ..++++.+..||.+|.+.+..... +          ......+..+|+....+..|.+  
T Consensus         8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~~~~L~d--   85 (98)
T 1vjk_A            8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDEELKD--   85 (98)
T ss_dssp             -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCTTCBCCT--
T ss_pred             CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCCCCCCCC--
Confidence            46999999752         356788788999999999986531 1          1234567788988876554443  


Q ss_pred             CCccceEEEecCC
Q psy2142         108 SGSIEIFVPLLGG  120 (168)
Q Consensus       108 ~sTL~LvvrllGG  120 (168)
                      ++++.+...+-||
T Consensus        86 GDeV~i~ppv~GG   98 (98)
T 1vjk_A           86 GDVVGVFPPVSGG   98 (98)
T ss_dssp             TCEEEEESCC---
T ss_pred             CCEEEEECCCCCC
Confidence            6778777766665

>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}

Probab=93.53  E-value=0.26  Score=32.86  Aligned_cols=68  Identities=13%  Similarity=0.187  Sum_probs=45.1

Q ss_pred             eEEEEEcCCc---eEEEEcCCCCHHHHHHHHhhhcCCCC--CCeEEEEcCeecCC-CCChhhhcCCccceEEEecCC
Q psy2142          50 KRIIVRGQSN---YVLECQQNETVSHLKNKVASLEKVAL--EDFSLICSGKTLTD-DLSISDLESGSIEIFVPLLGG  120 (168)
Q Consensus        50 MQIfVR~~~~---~tleV~~s~TV~~LK~kI~~~eGIp~--~~Q~Liy~GK~LeD-~~tL~dy~~sTL~LvvrllGG  120 (168)
                      |.|.|+.+..   -++++ +..||.+|.+.+....++..  ..-.+.-+|....+ +..|.+  ++++.+..++.||
T Consensus         1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~~~~l~~--gDeV~i~PpvsGG   74 (74)
T 3rpf_C            1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLNTPLKD--GDVISLLPPVCGG   74 (74)
T ss_dssp             CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCTTCCCCT--TCEEEEECCBCCC
T ss_pred             CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCCCcCCCC--CCEEEEECCCCCC
Confidence            6677776532   34777 56799999999986544322  34556678887543 333332  7788888887776

>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}

Probab=93.48  E-value=0.14  Score=35.95  Aligned_cols=58  Identities=14%  Similarity=0.167  Sum_probs=48.0

Q ss_pred             eEEEEEc---C-CceEEEEcCCCCHHHHHHHHhhhcCCCC-----CCeEEEEcCeecCCCCChhhhc
Q psy2142          50 KRIIVRG---Q-SNYVLECQQNETVSHLKNKVASLEKVAL-----EDFSLICSGKTLTDDLSISDLE  107 (168)
Q Consensus        50 MQIfVR~---~-~~~tleV~~s~TV~~LK~kI~~~eGIp~-----~~Q~Liy~GK~LeD~~tL~dy~  107 (168)
                      +.|.|..   . +.+.|.++...||..|.+.|.+..+++.     .+.++.-.|..|.++++|++|+
T Consensus         5 I~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~   71 (81)
T 2bps_A            5 IDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCG   71 (81)
T ss_dssp             EEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGT
T ss_pred             EEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCC
Confidence            4566664   2 3488999999999999999999998855     3567778899999999999998

>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2

Probab=93.23  E-value=0.17  Score=35.77  Aligned_cols=67  Identities=12%  Similarity=0.100  Sum_probs=43.7

Q ss_pred             CCceEEEEEcCCceEEEEcCC-CCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChh-hhc-CCccceEEEecCC
Q psy2142          47 ENMKRIIVRGQSNYVLECQQN-ETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSIS-DLE-SGSIEIFVPLLGG  120 (168)
Q Consensus        47 ~~~MQIfVR~~~~~tleV~~s-~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~-dy~-~sTL~LvvrllGG  120 (168)
                      ...|+|.|.   +-.+++++. .||.+|.+.+    ++++....+..+|..+..+.-.. .+. ++.|.++..+-||
T Consensus        18 ~~~M~I~vN---Ge~~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~~~~~~~L~dGD~Vei~~~V~GG   87 (87)
T 1tyg_B           18 GGRHMLQLN---GKDVKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKERYHEVELCDRDVIEIVHFVGGG   87 (87)
T ss_dssp             ----CEEET---TEEECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGGGTTTSBCCSSSEEEEEEECCC-
T ss_pred             CcceEEEEC---CEEEECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChhhcCCcCCCCCCEEEEEcccccC
Confidence            467888884   457778777 8999998876    56777778889999986421110 122 7788888776665

>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A

Probab=93.14  E-value=0.36  Score=34.91  Aligned_cols=61  Identities=20%  Similarity=0.272  Sum_probs=49.8

Q ss_pred             CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEE--EcCeecC--C-CCChhhhc
Q psy2142          47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLI--CSGKTLT--D-DLSISDLE  107 (168)
Q Consensus        47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Li--y~GK~Le--D-~~tL~dy~  107 (168)
                      .....|-||.++|  ..-....++||.+|.+-|....+.+.....|+  |--+.|.  | +.||.|.+
T Consensus        11 ~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elg   78 (109)
T 2dzk_A           11 STIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLE   78 (109)
T ss_dssp             SCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGT
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCC
Confidence            3457899999987  45588999999999999998877777777777  5678886  3 57899998

>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2

Probab=92.80  E-value=0.18  Score=32.94  Aligned_cols=62  Identities=18%  Similarity=0.358  Sum_probs=43.3

Q ss_pred             eEEEEEcCCceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCC----CCChhhhcCCccceEEEecCC
Q psy2142          50 KRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTD----DLSISDLESGSIEIFVPLLGG  120 (168)
Q Consensus        50 MQIfVR~~~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD----~~tL~dy~~sTL~LvvrllGG  120 (168)
                      |+|.|.   +-.+++.+..||.+|.+.+    ++++....+..+|..+..    +..|.+  ++.+.++..+-||
T Consensus         1 m~i~vN---g~~~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~~~~~~~L~~--gD~v~i~~~V~GG   66 (66)
T 1f0z_A            1 MQILFN---DQAMQCAAGQTVHELLEQL----DQRQAGAALAINQQIVPREQWAQHIVQD--GDQILLFQVIAGG   66 (66)
T ss_dssp             CCEEES---SCEECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHHHHTTCCCCT--TEEECEEESCCCC
T ss_pred             CEEEEC---CEEEEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCchhcCCcCCCC--CCEEEEEeecccC
Confidence            566664   3467777888999999876    566777788899998864    233322  6677777666655

>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A

Probab=91.79  E-value=0.66  Score=34.45  Aligned_cols=61  Identities=18%  Similarity=0.307  Sum_probs=48.8

Q ss_pred             CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhh-cCCCCCCeEEE--EcCeecCC-CCChhhhc
Q psy2142          47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASL-EKVALEDFSLI--CSGKTLTD-DLSISDLE  107 (168)
Q Consensus        47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~-eGIp~~~Q~Li--y~GK~LeD-~~tL~dy~  107 (168)
                      +....|-||.++|  ..-....++||.+|.+-|... .+.+.....|+  |-.+.|+| +.||.|++
T Consensus        50 ~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eag  116 (127)
T 1s3s_G           50 EPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEAN  116 (127)
T ss_dssp             SCCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHT
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCC
Confidence            3458899999987  556889999999999999885 34556677777  56888976 58999998

>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}

Probab=90.78  E-value=0.22  Score=37.43  Aligned_cols=34  Identities=9%  Similarity=0.140  Sum_probs=31.1

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEc
Q psy2142          60 YVLECQQNETVSHLKNKVASLEKVALEDFSLICS   93 (168)
Q Consensus        60 ~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~   93 (168)
                      .++.|..++|+.+|++.|++..|+|+++|+|+.-
T Consensus        58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~   91 (130)
T 2kvr_A           58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM   91 (130)
T ss_dssp             EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred             ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEe
Confidence            4678889999999999999999999999999965

>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2

Probab=90.49  E-value=1.1  Score=32.14  Aligned_cols=59  Identities=10%  Similarity=0.084  Sum_probs=47.6

Q ss_pred             CceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEE--EcCeecC--CCCChhhhc
Q psy2142          48 NMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLI--CSGKTLT--DDLSISDLE  107 (168)
Q Consensus        48 ~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Li--y~GK~Le--D~~tL~dy~  107 (168)
                      ....|-||.++|  +.-....++||.+|.+-|... +..+....|+  |-.+.|.  .+.||.+++
T Consensus        22 ~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~g   86 (109)
T 2cr5_A           22 EVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIG   86 (109)
T ss_dssp             SEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHT
T ss_pred             CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcC
Confidence            468999999987  455888999999999999954 5566777776  5578886  368999998

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A

Probab=88.32  E-value=2.6  Score=35.61  Aligned_cols=73  Identities=12%  Similarity=0.141  Sum_probs=54.6

Q ss_pred             eEEEEEcCC-ceEEEEcCCCCHHHHHHHHhhhcC----CCCCCeEEEE------cCeecCCCCChhhhc---CCccc---
Q psy2142          50 KRIIVRGQS-NYVLECQQNETVSHLKNKVASLEK----VALEDFSLIC------SGKTLTDDLSISDLE---SGSIE---  112 (168)
Q Consensus        50 MQIfVR~~~-~~tleV~~s~TV~~LK~kI~~~eG----Ip~~~Q~Liy------~GK~LeD~~tL~dy~---~sTL~---  112 (168)
                      +.|.|.-.+ +-++..+|+.||.++-..|.+...    .++++--|..      .|.-|++..||+.|+   +..++   
T Consensus         4 ~~~~~~~~~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~   83 (371)
T 3ivf_A            4 LSLKISIGNVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRK   83 (371)
T ss_dssp             EEEEEEETTEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred             EEEEEEecceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccC
Confidence            344454454 378999999999999999877642    4678888888      567799999999998   44444   


Q ss_pred             ----eEEEecCCcc
Q psy2142         113 ----IFVPLLGGKL  122 (168)
Q Consensus       113 ----LvvrllGGKv  122 (168)
                          +.|.+++|..
T Consensus        84 ~~~~~~V~l~dg~~   97 (371)
T 3ivf_A           84 KQRPLKIRMLDGTV   97 (371)
T ss_dssp             CEEEEEEECTTSCE
T ss_pred             ceeEEEEECcCCCE
Confidence                4577888753

>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A

Probab=88.18  E-value=2.2  Score=28.80  Aligned_cols=59  Identities=12%  Similarity=0.285  Sum_probs=41.8

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcC-CC-----C-----CCeEEEEcCeecCCCCChhhhcCCccceEEEecCC
Q psy2142          60 YVLECQQNETVSHLKNKVASLEK-VA-----L-----EDFSLICSGKTLTDDLSISDLESGSIEIFVPLLGG  120 (168)
Q Consensus        60 ~tleV~~s~TV~~LK~kI~~~eG-Ip-----~-----~~Q~Liy~GK~LeD~~tL~dy~~sTL~LvvrllGG  120 (168)
                      ..+++.+..||.+|.+.+..... +.     .     ....+.-+|+...++..|.+  ++++.+..++.||
T Consensus        20 ~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~~~l~~--gDeV~i~Ppv~GG   89 (89)
T 3po0_A           20 VRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALGEATAA--GDELALFPPVSGG   89 (89)
T ss_dssp             EEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTTSBCCT--TCEEEEECCCSCC
T ss_pred             EEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCCcccCC--CCEEEEECCCCCC
Confidence            56788778899999999987642 10     0     12467778988876555443  7788888877776

>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*

Probab=88.08  E-value=2.2  Score=31.82  Aligned_cols=33  Identities=18%  Similarity=0.293  Sum_probs=25.8

Q ss_pred             eEEEEcCCCCHHHHHHHHhhh--cCCCC------CCeEEEE
Q psy2142          60 YVLECQQNETVSHLKNKVASL--EKVAL------EDFSLIC   92 (168)
Q Consensus        60 ~tleV~~s~TV~~LK~kI~~~--eGIp~------~~Q~Liy   92 (168)
                      +.+.|-..|||.++|++|-+.  .|.|.      ++.-|-+
T Consensus        29 i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEw   69 (117)
T 4e74_A           29 VPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEW   69 (117)
T ss_dssp             EEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEE
T ss_pred             eEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEE
Confidence            778888999999999999877  46654      4566665

>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A

Probab=88.08  E-value=2.4  Score=32.51  Aligned_cols=58  Identities=16%  Similarity=0.289  Sum_probs=41.8

Q ss_pred             ceEEEEcCCCCHHHHHHHHhhh--cCCCC------CCeEEEE----cCe-ecCCCC-------------Chhhhc---CC
Q psy2142          59 NYVLECQQNETVSHLKNKVASL--EKVAL------EDFSLIC----SGK-TLTDDL-------------SISDLE---SG  109 (168)
Q Consensus        59 ~~tleV~~s~TV~~LK~kI~~~--eGIp~------~~Q~Liy----~GK-~LeD~~-------------tL~dy~---~s  109 (168)
                      .+.+.|-..|||.++|++|-++  .|+|-      ++.-|-+    +|+ +|.|++             ||+.|+   ++
T Consensus        42 ~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dga  121 (138)
T 2r2o_A           42 GVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDGA  121 (138)
T ss_dssp             CEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTTC
T ss_pred             ceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCCC
Confidence            3788999999999999999987  45644      4556655    343 577652             788887   67


Q ss_pred             ccceEEE
Q psy2142         110 SIEIFVP  116 (168)
Q Consensus       110 TL~Lvvr  116 (168)
                      ++-|+.+
T Consensus       122 ~l~l~~~  128 (138)
T 2r2o_A          122 TVALVPC  128 (138)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            7777654

>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}

Probab=87.93  E-value=1.4  Score=35.58  Aligned_cols=48  Identities=17%  Similarity=0.234  Sum_probs=40.3

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCCCCC-CeEEEE-c----CeecCC-CCChhhhc
Q psy2142          60 YVLECQQNETVSHLKNKVASLEKVALE-DFSLIC-S----GKTLTD-DLSISDLE  107 (168)
Q Consensus        60 ~tleV~~s~TV~~LK~kI~~~eGIp~~-~Q~Liy-~----GK~LeD-~~tL~dy~  107 (168)
                      +++.++..+||.+|++.+....+||++ +.+|.. .    ...|.| +.||.+++
T Consensus       154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~  208 (231)
T 3jyu_A          154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAG  208 (231)
T ss_dssp             EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTT
T ss_pred             EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhC
Confidence            557789999999999999999999997 699985 2    346666 48999998

>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A

Probab=87.32  E-value=0.26  Score=33.25  Aligned_cols=57  Identities=19%  Similarity=0.261  Sum_probs=41.4

Q ss_pred             CceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhcCCccceEEEecCC
Q psy2142          58 SNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLESGSIEIFVPLLGG  120 (168)
Q Consensus        58 ~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~~sTL~LvvrllGG  120 (168)
                      ++.++++.+..||.+|.+.+    +++.+...+..+|+....+..|.+  ++.+.+...+-||
T Consensus        21 n~~~~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~~~L~d--GD~V~i~ppv~GG   77 (77)
T 1rws_A           21 IEKEIEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLEDDEVKD--GDFVEVIPVVSGG   77 (77)
T ss_dssp             CCCCCCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSSSCCCS--SCCCBCSCCCCCC
T ss_pred             CCEEEECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCCCCcCC--CCEEEEEcccccC
Confidence            34566777788999998765    466777778899999977644433  6788877776665

>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D

Probab=86.51  E-value=0.94  Score=30.03  Aligned_cols=58  Identities=17%  Similarity=0.283  Sum_probs=38.8

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcC-----CCCCCeEEEEcCeecCCCCChhhhcCCccceEEEecCC
Q psy2142          60 YVLECQQNETVSHLKNKVASLEK-----VALEDFSLICSGKTLTDDLSISDLESGSIEIFVPLLGG  120 (168)
Q Consensus        60 ~tleV~~s~TV~~LK~kI~~~eG-----Ip~~~Q~Liy~GK~LeD~~tL~dy~~sTL~LvvrllGG  120 (168)
                      .+++ .+..||.+|.+.+.....     ++.....+..+|+...++..|.+  ++++.+...+.||
T Consensus        19 ~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~~~~l~~--gD~V~i~Ppv~GG   81 (81)
T 1fm0_D           19 TEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSFDHPLTD--GDEVAFFPPVTGG   81 (81)
T ss_dssp             EEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCTTCBCCT--TCEEEEECCCCCC
T ss_pred             EEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCCCCCCCC--CCEEEEeCCCCCC
Confidence            3344 456799999999875531     23334568889998865554433  6788887777666

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=86.49  E-value=1.9  Score=35.93  Aligned_cols=48  Identities=13%  Similarity=0.124  Sum_probs=40.2

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCe-ecCCC-CChhhhc
Q psy2142          60 YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGK-TLTDD-LSISDLE  107 (168)
Q Consensus        60 ~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK-~LeD~-~tL~dy~  107 (168)
                      +.+.+.+.+|+.++++.|++..+|++++|.|+|.+. ..-|. ....+|.
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~  373 (396)
T 4eut_A          324 HKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFP  373 (396)
T ss_dssp             EEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSC
T ss_pred             EEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCC
Confidence            678899999999999999999999999999999984 43343 4456676

>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A

Probab=86.02  E-value=2.2  Score=34.12  Aligned_cols=61  Identities=15%  Similarity=0.144  Sum_probs=45.2

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCCCCC-CeEEEE-c----CeecCC-CCChhhhc---CCccceEEEecCC
Q psy2142          60 YVLECQQNETVSHLKNKVASLEKVALE-DFSLIC-S----GKTLTD-DLSISDLE---SGSIEIFVPLLGG  120 (168)
Q Consensus        60 ~tleV~~s~TV~~LK~kI~~~eGIp~~-~Q~Liy-~----GK~LeD-~~tL~dy~---~sTL~LvvrllGG  120 (168)
                      +++.++..+||.+|++.+....+||++ +.+|.. .    ...|+| +.||.+++   +..|-+-++...|
T Consensus       142 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg  212 (217)
T 4a3p_A          142 VTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDG  212 (217)
T ss_dssp             EEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-
T ss_pred             eEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence            668889999999999999999999997 688873 2    345666 46999998   3444444444344

>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}

Probab=84.67  E-value=2.7  Score=31.83  Aligned_cols=57  Identities=18%  Similarity=0.288  Sum_probs=40.6

Q ss_pred             eEEEEcCCCCHHHHHHHHhhh--cCCCC------CCeEEEE----cCe-ecCCCC-------------Chhhhc---CCc
Q psy2142          60 YVLECQQNETVSHLKNKVASL--EKVAL------EDFSLIC----SGK-TLTDDL-------------SISDLE---SGS  110 (168)
Q Consensus        60 ~tleV~~s~TV~~LK~kI~~~--eGIp~------~~Q~Liy----~GK-~LeD~~-------------tL~dy~---~sT  110 (168)
                      +.+.|=..|||.++|++|-++  .|.|.      +++-|-+    .|+ +|.|++             ||+.|+   ++|
T Consensus        19 i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~dgat   98 (127)
T 3h6n_A           19 LSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIPEGAS   98 (127)
T ss_dssp             EEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCCTTCE
T ss_pred             eeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCCCCCE
Confidence            778888999999999999887  45554      6777877    344 477643             455665   677


Q ss_pred             cceEEE
Q psy2142         111 IEIFVP  116 (168)
Q Consensus       111 L~Lvvr  116 (168)
                      +-|+.+
T Consensus        99 v~l~~~  104 (127)
T 3h6n_A           99 LAMSLI  104 (127)
T ss_dssp             EEEEEC
T ss_pred             EEEEEc
Confidence            776644

>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A

Probab=83.59  E-value=2  Score=29.31  Aligned_cols=64  Identities=20%  Similarity=0.281  Sum_probs=45.3

Q ss_pred             eEEEEEcCCceEEEEc--CCCCHHHHHHHHhhhcCCC-CCCeEEEEcCeecCCCCChhhh--c-CCccceEEEecCCc
Q psy2142          50 KRIIVRGQSNYVLECQ--QNETVSHLKNKVASLEKVA-LEDFSLICSGKTLTDDLSISDL--E-SGSIEIFVPLLGGK  121 (168)
Q Consensus        50 MQIfVR~~~~~tleV~--~s~TV~~LK~kI~~~eGIp-~~~Q~Liy~GK~LeD~~tL~dy--~-~sTL~LvvrllGGK  121 (168)
                      |+|.|.   +-.++++  +..||.+|-+++    |++ +....+-.+|.++.-+. ..+.  . ++.|.++-.+-||.
T Consensus         1 M~I~vN---Ge~~e~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVpr~~-~~~~~L~dGD~IEIv~~VgGG~   70 (78)
T 2k5p_A            1 MNLTVN---GKPSTVDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLEREA-FDATTVKDGDAVEFLYFMGGGK   70 (78)
T ss_dssp             CEEEET---TEEEECSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECCTTH-HHHCEECSSBCEEECCCCCCSC
T ss_pred             CEEEEC---CEEEEcCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECChHH-cCcccCCCCCEEEEEeeecCCC
Confidence            677764   4577887  778999997754    677 77777889999996542 2222  2 77888887777764

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=83.28  E-value=1.3  Score=41.27  Aligned_cols=47  Identities=15%  Similarity=0.214  Sum_probs=39.9

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCe-ecCCCCChhhh
Q psy2142          60 YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGK-TLTDDLSISDL  106 (168)
Q Consensus        60 ~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK-~LeD~~tL~dy  106 (168)
                      +.+.+++++|+.+|+..|++..|||++.|.|++.+. +++.....++|
T Consensus       324 ~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~  371 (676)
T 3qa8_A          324 HTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY  371 (676)
T ss_dssp             CEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred             ceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence            678999999999999999999999999999998654 44555566765

>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}

Probab=83.14  E-value=2.5  Score=29.61  Aligned_cols=69  Identities=19%  Similarity=0.299  Sum_probs=43.1

Q ss_pred             ceEEEEEcCC-------ceEEEEcCCCCHHHHHHHHhhhc-CCCCC---------Ce-------EEEEcCeecCC----C
Q psy2142          49 MKRIIVRGQS-------NYVLECQQNETVSHLKNKVASLE-KVALE---------DF-------SLICSGKTLTD----D  100 (168)
Q Consensus        49 ~MQIfVR~~~-------~~tleV~~s~TV~~LK~kI~~~e-GIp~~---------~Q-------~Liy~GK~LeD----~  100 (168)
                      +|+|.|+...       ...++++ ..||.+|.+.+.... ++...         ..       .+..+|+....    +
T Consensus         3 mm~v~V~~fa~lr~~~g~~~~~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~~~~   81 (99)
T 2l52_A            3 MAEVKVKLFANLREAAGTPELPLS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLEGLE   81 (99)
T ss_dssp             CCEEEEEECTHHHHHHSSSEEEEE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTTSTT
T ss_pred             ceEEEEEEeHHHHHHhCCCeEEEe-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccCCCC
Confidence            5899999762       2355666 689999999988763 11110         12       57788887632    2


Q ss_pred             CChhhhcCCccceEEEecCC
Q psy2142         101 LSISDLESGSIEIFVPLLGG  120 (168)
Q Consensus       101 ~tL~dy~~sTL~LvvrllGG  120 (168)
                      ..|.+  ++++.+...+-||
T Consensus        82 ~~L~~--gD~V~i~ppv~GG   99 (99)
T 2l52_A           82 TLLKD--SDEIGILPPVSGG   99 (99)
T ss_dssp             SCCCT--TEEEEEECCCSCC
T ss_pred             CCCCC--CCEEEEECCCCCC
Confidence            22222  6678877766665

>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.97  E-value=5.7  Score=28.41  Aligned_cols=69  Identities=14%  Similarity=0.132  Sum_probs=56.5

Q ss_pred             eCCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEE---cCeecCCCCChhhhcCCccceE
Q psy2142          46 IENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLIC---SGKTLTDDLSISDLESGSIEIF  114 (168)
Q Consensus        46 ~~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy---~GK~LeD~~tL~dy~~sTL~Lv  114 (168)
                      .+....+.|.-..+  ..+.|+|.-++++|--.|.+.-.+.++.-.|.-   .+.+|+=+.+|.|||...|.++
T Consensus         7 PE~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirELya~   80 (91)
T 2daj_A            7 GEKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRELYAM   80 (91)
T ss_dssp             CCSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSEEEEE
T ss_pred             CccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhhhhee
Confidence            46777888877755  778999999999999999999999999988874   4567777889999996655543

>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E

Probab=81.80  E-value=1.7  Score=27.98  Aligned_cols=56  Identities=13%  Similarity=0.251  Sum_probs=39.0

Q ss_pred             CceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCC----CChhhhcCCccceEEEecCC
Q psy2142          58 SNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDD----LSISDLESGSIEIFVPLLGG  120 (168)
Q Consensus        58 ~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~----~tL~dy~~sTL~LvvrllGG  120 (168)
                      ++-.+++ +..||.+|.+.+    ++++....+..+|..+..+    ..|.+  ++.+.++..+-||
T Consensus         5 Ng~~~~~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~~~~~~~L~d--gD~v~i~~~V~GG   64 (64)
T 2cu3_A            5 NGEPRPL-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGLEVPDRPLRD--GDVVEVVALMQGG   64 (64)
T ss_dssp             TTEEECC-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGGGCCCCCCCT--TCEEEEEECCCC-
T ss_pred             CCEEEEc-CCCcHHHHHHHc----CCCCCcEEEEECCEECCccccCCcCCCC--CCEEEEEeecccC
Confidence            4556777 778999999876    4567777788999988633    32322  6788877766665

>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A

Probab=81.46  E-value=5.8  Score=26.94  Aligned_cols=70  Identities=9%  Similarity=0.162  Sum_probs=43.2

Q ss_pred             eEEEEEcCC--------ceEEEEcCCCCHHHHHHHHhhhcC-C-----C-------CCCeEEEEcCeecCCCCChhh-hc
Q psy2142          50 KRIIVRGQS--------NYVLECQQNETVSHLKNKVASLEK-V-----A-------LEDFSLICSGKTLTDDLSISD-LE  107 (168)
Q Consensus        50 MQIfVR~~~--------~~tleV~~s~TV~~LK~kI~~~eG-I-----p-------~~~Q~Liy~GK~LeD~~tL~d-y~  107 (168)
                      |+|.|+.+.        ...+++ +..||.+|.+.+..... +     .       .....+.-+|....+..-+.. ..
T Consensus         1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~~~~L~   79 (93)
T 3dwg_C            1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGLATAIA   79 (93)
T ss_dssp             -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGGGCBCC
T ss_pred             CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCCCcCCC
Confidence            677888541        135775 45799999999987642 1     1       013566678887764221211 12


Q ss_pred             -CCccceEEEecCC
Q psy2142         108 -SGSIEIFVPLLGG  120 (168)
Q Consensus       108 -~sTL~LvvrllGG  120 (168)
                       ++++.+..++.||
T Consensus        80 ~gDeV~i~Ppv~GG   93 (93)
T 3dwg_C           80 DGDSVTILPAVAGG   93 (93)
T ss_dssp             TTCEEEEEECCTTC
T ss_pred             CCCEEEEECCCCCC
Confidence             7888888888877

>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A

Probab=81.35  E-value=7.9  Score=26.85  Aligned_cols=33  Identities=18%  Similarity=0.141  Sum_probs=23.9

Q ss_pred             ceEEEEEcC-------Cc---eEEEEc--CCCCHHHHHHHHhhhc
Q psy2142          49 MKRIIVRGQ-------SN---YVLECQ--QNETVSHLKNKVASLE   81 (168)
Q Consensus        49 ~MQIfVR~~-------~~---~tleV~--~s~TV~~LK~kI~~~e   81 (168)
                      +|+|.|+.+       ++   .++++.  +..||.+|.+.+.+..
T Consensus         1 mM~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~   45 (99)
T 2qjl_A            1 MVNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTM   45 (99)
T ss_dssp             CEEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHT
T ss_pred             CcEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHC
Confidence            478888853       12   456665  6789999999998765

>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*

Probab=81.05  E-value=1.3  Score=29.14  Aligned_cols=58  Identities=12%  Similarity=0.175  Sum_probs=39.1

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCCCCCCe--EEEEcCeecCCCCChhhhcCCccceEEEecCC
Q psy2142          60 YVLECQQNETVSHLKNKVASLEKVALEDF--SLICSGKTLTDDLSISDLESGSIEIFVPLLGG  120 (168)
Q Consensus        60 ~tleV~~s~TV~~LK~kI~~~eGIp~~~Q--~Liy~GK~LeD~~tL~dy~~sTL~LvvrllGG  120 (168)
                      .++++.+..||.+|.+.+..... .....  .+..+|+....+..|.+  ++.+.+...+-||
T Consensus        18 ~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~~~L~~--gD~V~i~ppv~GG   77 (77)
T 2q5w_D           18 EDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKSDFIQP--NDTVALIPPVSGG   77 (77)
T ss_dssp             EECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTTSEECT--TCEEEEECSCCCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCCCCcCC--CCEEEEECCCCCC
Confidence            45666677899999999876531 01233  67789998876543433  6778877766665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	168
d2bwfa1	73	d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc	1e-06
d2c9wb1	103	d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)	3e-06
d1z2ma2	76	d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot	3e-05
d1wgda_	93	d.15.1.1 (A:) Homocysteine-responsive endoplasmic	9e-05
d1ogwa_	76	d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [Tax	1e-04
d1wx9a1	73	d.15.1.1 (A:8-80) Large proline-rich protein BAT3	1e-04
d1zkha1	86	d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t	2e-04
d2zeqa1	78	d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin	2e-04
d1bt0a_	73	d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis t	8e-04
d1j8ca_	103	d.15.1.1 (A:) Ubiquitin-like N-terminal domain of	0.001
d1v5ta_	90	d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus mu	0.002
d1oqya4	77	d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 h	0.002
d1wh3a_	87	d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like	0.003

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (99), Expect = 1e-06
 Identities = 14/59 (23%), Positives = 24/59 (40%)

Query: 48  NMKRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDL 106
           ++   I  GQ  + +      TV   K  +     + + +  LI SGK L DD ++   
Sbjct: 1   SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY 59

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (98), Expect = 3e-06
 Identities = 11/53 (20%), Positives = 24/53 (45%)

Query: 53  IVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD 105
           I R ++    + +++ TV  LK  V  + K   ++  L    + L D  ++ +
Sbjct: 6   IRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGE 58

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (89), Expect = 3e-05
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 5/69 (7%)

Query: 47  ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSIS 104
           E +  I+VR         E +  +TV+HLK +V+ LE V  + F L   GK L D L + 
Sbjct: 2   EPLS-ILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLG 60

Query: 105 D--LESGSI 111
           +  L+  S 
Sbjct: 61  EYGLKPLST 69

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (87), Expect = 9e-05
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 57  QSNYVLECQQNETVSHLKNKVASL--EKVALEDFSLICSGKTLTDDLSISDL 106
             +  L   +  +V HLK  ++ +  E+   ED  LI SGK L D   + DL
Sbjct: 19  HRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDL 70

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (85), Expect = 1e-04
 Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)

Query: 49  MKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD- 105
           M+ I V+  +     LE + ++T+ ++K K+   E +  +   LI +GK L D  ++SD 
Sbjct: 1   MQ-IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59

Query: 106 -LESGS-IEIFVPLLGG 120
            ++  S + + + L GG
Sbjct: 60  NIQKESTLHLVLRLRGG 76

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (84), Expect = 1e-04
 Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 2/57 (3%)

Query: 51  RIIVR--GQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD 105
            ++V+                V   K  +A+   +  E   LI  G+ L DD  + +
Sbjct: 2   EVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQE 58

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (83), Expect = 2e-04
 Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 60  YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD--LESGSI 111
            V      + VS +K K+     +      L   G  + D  S++   + +G++
Sbjct: 24  LVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAV 77

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.0 bits (83), Expect = 2e-04
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 51  RIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD--L 106
            + VR  S+  + +E   + ++  LK  VA  + V  +   +I +GK L + L++ +  L
Sbjct: 4   IVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNCDL 63

Query: 107 ESGSI 111
           E  SI
Sbjct: 64  EQQSI 68

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 34.5 bits (79), Expect = 8e-04
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 5/67 (7%)

Query: 49  MKRIIVR--GQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD- 105
           M  I V+        ++ +  +T+  +K +V   E +      LI +GK L DD +  D 
Sbjct: 1   ML-IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDY 59

Query: 106 -LESGSI 111
            +E GS+
Sbjct: 60  NIEGGSV 66

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (80), Expect = 0.001
 Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 3/68 (4%)

Query: 47  ENMKRIIVR-GQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD 105
             + ++ V+  +        +N +V   K  ++   K   +   LI +GK L D  ++  
Sbjct: 30  PKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQ 89

Query: 106 --LESGSI 111
             +  G  
Sbjct: 90  HGIHDGLT 97

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.8 bits (77), Expect = 0.002
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 51  RIIVR--GQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLIC---SGKTLTDDLSISD 105
            IIV+  GQ   V    +++TV  LK  + +L  V  E   L+     GK   +D+ +  
Sbjct: 9   PIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGA 68

Query: 106 L 106
           L
Sbjct: 69  L 69

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.3 bits (76), Expect = 0.002
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 7/71 (9%)

Query: 52  IIVR--GQSNYVLECQQNETVSHLKNKVAS---LEKVALEDFSLICSGKTLTDDLSISD- 105
           I ++   Q  + +  + +ETV  LK K+ +    +   +    LI +GK L+DD+ I D 
Sbjct: 5   ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64

Query: 106 -LESGSIEIFV 115
            ++  +  + +
Sbjct: 65  RIDEKNFVVVM 75

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.0 bits (75), Expect = 0.003
 Identities = 11/76 (14%), Positives = 27/76 (35%), Gaps = 5/76 (6%)

Query: 51  RIIVR--GQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISD--L 106
           ++ V+     +Y      N  +  LK ++   + +  +   L   G+ L D L +    +
Sbjct: 9   QVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGI 68

Query: 107 ESGS-IEIFVPLLGGK 121
           +    + +      G 
Sbjct: 69  QDSDTLILSKKKGSGP 84

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	168
d1ogwa_	76	Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}	99.87
d2zeqa1	78	Ubiquitin-like domain of parkin {Mouse (Mus muscul	99.85
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	99.85
d1z2ma2	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.84
d1bt0a_	73	Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI	99.84
d1wx9a1	73	Large proline-rich protein BAT3 {Human (Homo sapie	99.81
d2faza1	76	Ubiquitin-like PHD and RING finger domain-containi	99.8
d1wy8a1	76	Ubiquitin-like PHD and RING finger domain-containi	99.78
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	99.78
d1yqba1	84	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	99.78
d2bwfa1	73	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.77
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	99.75
d1uela_	95	Ubiquitin-like domain of Rad23 homolog B (Hhr23B)	99.75
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	99.74
d1oqya4	77	Ubiquitin-like domain of Rad23 homolog A (Hhr23a)	99.72
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	99.72
d1z2ma1	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.71
d1we6a_	111	Splicing factor 3 subunit 1, C-terminal domain {Th	99.7
d1wgha_	116	Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu	99.69
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	99.68
d1se9a_	101	Hypothetical protein At3g01050 {Thale cress (Arabi	99.68
d1zkha1	86	Splicing factor 3 subunit 1, C-terminal domain {Hu	99.67
d1wgda_	93	Homocysteine-responsive endoplasmic reticulum-resi	99.65
d1v2ya_	105	Ubiquitin-like protein 3300001g02rik {Mouse (Mus m	99.63
d1v5oa_	102	1700011n24rik protein {Mouse (Mus musculus) [TaxId	99.62
d1wiaa_	95	Ubiquitin-like protein bab25500 (2010008E23Rik) {M	99.59
d2c9wb1	103	Elongin B {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1wgga_	96	Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M	99.58
d1wjua_	100	NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens	99.57
d1v86a_	95	hypothetical D7wsu128e protein {Mouse (Mus musculu	99.56
d1v5ta_	90	8430435i17rik protein {Mouse (Mus musculus) [TaxId	99.56
d1wxva1	81	Bag-family molecular chaperone regulator-1 {Human	99.53
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	99.45
d1v6ea_	95	Ubiquitin-like domain of tubulin folding cofactor	99.38
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	99.2
d1x1ma1	94	Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta	99.18
d1wjna_	97	Tubulin-folding protein TbcE {Mouse (Mus musculus)	99.12
d1t0ya_	90	Ubiquitin-like domain of tubulin folding cofactor	98.97
d1wm3a_	72	SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}	98.07
d1wf9a1	94	NPL4-like protein 1 {Thale cress (Arabidopsis thal	97.66
d2al3a1	76	Tether containing UBX domain for GLUT4 (Tug) {Mous	95.99
d1h8ca_	82	Fas-associated factor 1, Faf1 {Human (Homo sapiens	95.37
d1i42a_	89	p47 {Rat (Rattus norvegicus) [TaxId: 10116]}	94.09
d2cr5a1	96	UBX domain-containing protein 6 (Reproduction 8) {	91.56
d1vjka_	88	Molybdopterin synthase subunit MoaD {Pyrococcus fu	90.84
d1wj4a_	124	Hypothetical protein KIAA0794 {Human (Homo sapiens	90.16
d1oeya_	82	Neutrophil cytosol factor 2 (p67phox component of	88.14
d1c1yb_	77	c-Raf1 RBD {Human (Homo sapiens) [TaxId: 9606]}	87.14
d1wgra_	100	Growth factor receptor-bound protein 7, GRB-7 {Hum	87.13
d1wxma1	73	A-Raf proto-oncogene serine/threonine-protein kina	85.86

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.6e-22  Score=139.08  Aligned_cols=71  Identities=27%  Similarity=0.488  Sum_probs=68.7

Q ss_pred             eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142          50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG  120 (168)
Q Consensus        50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG  120 (168)
                      ||||||+.++  ++++|++++||.+||++|++..|+|+++|+|+|+|++|+|+.||++|+   +++|+|+++++||
T Consensus         1 MqI~Vk~l~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~Gk~L~d~~tL~~y~i~~~s~I~L~~rlrgG   76 (76)
T d1ogwa_           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   76 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECTTCC
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHhhhhhcCCChHHEEeEECCeEcCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence            8999999865  889999999999999999999999999999999999999999999998   8999999999998

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=6.2e-22  Score=137.53  Aligned_cols=71  Identities=21%  Similarity=0.334  Sum_probs=67.9

Q ss_pred             ceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecC
Q psy2142          49 MKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLG  119 (168)
Q Consensus        49 ~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllG  119 (168)
                      .|+||||+.++  ++++|++++||++||++|++.+|||+++|+|+|+|++|+|+.+|++|+   ++|||++.|++|
T Consensus         2 ~M~I~Vk~~~g~t~~l~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lv~R~rg   77 (78)
T d2zeqa1           2 GMIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR   77 (78)
T ss_dssp             CEEEEEESSSSSCEEEEECTTCBHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCBGGGSSCCTTCEEEEEESSCC
T ss_pred             ceEEEEEcCCCCEEEEEEcccccHHHHHHHHHHHHCcChhHeEEEEeeeEcCCCCCHHHcCCCCCCEEEEEeccCC
Confidence            59999998854  999999999999999999999999999999999999999999999998   899999999987

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.5e-21  Score=137.59  Aligned_cols=75  Identities=16%  Similarity=0.204  Sum_probs=71.2

Q ss_pred             CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCc
Q psy2142          47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGK  121 (168)
Q Consensus        47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGK  121 (168)
                      .+.||||||++++  ++|+|++++||.+||++|++.+|||+++|+|+|+|+.|+|+.+|++|+   ++||||+.++.||.
T Consensus         5 s~~mqI~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~stl~l~~r~~~gp   84 (87)
T d1wh3a_           5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSGP   84 (87)
T ss_dssp             SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCCS
T ss_pred             CCcEEEEEECCCCCEEEEEECCcCcHHHHHHHHHHHHCcChHHeEEEeeceEcCCCCcHHHcCCCCCCEEEEEecCCCCC
Confidence            5789999999865  889999999999999999999999999999999999999999999999   89999999998875

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3.3e-21  Score=132.31  Aligned_cols=70  Identities=30%  Similarity=0.415  Sum_probs=66.8

Q ss_pred             CceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEe
Q psy2142          48 NMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPL  117 (168)
Q Consensus        48 ~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvrl  117 (168)
                      ..||||||+.+|  ++++|++++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+   ++|||+++||
T Consensus         2 ~~~qi~Vk~~~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~gk~L~d~~tL~~y~I~~~sti~l~lRL   76 (76)
T d1z2ma2           2 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRL   76 (76)
T ss_dssp             CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECC
T ss_pred             CCEEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHhcCChhHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence            579999999865  889999999999999999999999999999999999999999999999   8999999986

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.84  E-value=2.8e-21  Score=131.94  Aligned_cols=68  Identities=22%  Similarity=0.376  Sum_probs=65.4

Q ss_pred             eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEe
Q psy2142          50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPL  117 (168)
Q Consensus        50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvrl  117 (168)
                      |+|+||+.+|  ++++|++++||++||++|++.+|+|+++|+|+|+|++|+|+.||++|+   ++|||+++||
T Consensus         1 M~I~Vk~~~G~~~~l~V~~~~tV~~lK~~i~~~~gi~~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lvlrL   73 (73)
T d1bt0a_           1 MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLAL   73 (73)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEeeC
Confidence            8999999875  889999999999999999999999999999999999999999999998   8999999986

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.3e-20  Score=129.07  Aligned_cols=68  Identities=18%  Similarity=0.281  Sum_probs=64.4

Q ss_pred             eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc--CCccceEEEe
Q psy2142          50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE--SGSIEIFVPL  117 (168)
Q Consensus        50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~--~sTL~Lvvrl  117 (168)
                      |||+||+.++  ++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+  ++|+||+.+.
T Consensus         1 m~I~Vk~~~g~~~~l~V~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~dy~i~~~ti~lv~r~   72 (73)
T d1wx9a1           1 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERA   72 (73)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHCCCTTTCCCEETTEECCSSSBHHHHTCTTEEEBCCCSS
T ss_pred             CEEEEEcCCCCEEEEEECCCChHHHHHHHHHHHhCCChHHEEEEECCeEccCCCCHHHhCCCCCEEEEEecC
Confidence            8999999865  889999999999999999999999999999999999999999999999  8899998764

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=4.7e-20  Score=127.59  Aligned_cols=68  Identities=24%  Similarity=0.298  Sum_probs=63.8

Q ss_pred             eEEEEEcCCc---eEEE-EcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEe
Q psy2142          50 KRIIVRGQSN---YVLE-CQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPL  117 (168)
Q Consensus        50 MQIfVR~~~~---~tle-V~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvrl  117 (168)
                      |+||||+.+|   ++++ +++++||++||++|++.+|||+++|+|+|+|++|+|+.+|++|+   ++||||++|+
T Consensus         1 M~I~Vktl~Gk~t~~l~~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~~sti~lv~r~   75 (76)
T d2faza1           1 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ   75 (76)
T ss_dssp             EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCcEEEEecCCCCCCHHHHHHHHHHHHCcChHHeEEEEeeEeccCCCcHHHcCCCCCCEEEEEEEc
Confidence            9999999865   6664 89999999999999999999999999999999999999999998   8999999986

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.7e-19  Score=123.67  Aligned_cols=68  Identities=24%  Similarity=0.334  Sum_probs=63.6

Q ss_pred             eEEEEEcCCc---eEE-EEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEe
Q psy2142          50 KRIIVRGQSN---YVL-ECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPL  117 (168)
Q Consensus        50 MQIfVR~~~~---~tl-eV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvrl  117 (168)
                      |+|+||+.+|   +++ +|++++||++||++|++.+|||+++|+|+|+|++|+|+.+|++|+   +++|||++++
T Consensus         1 M~I~Vk~l~G~~t~~~~~v~~~~TV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~s~i~lv~rp   75 (76)
T d1wy8a1           1 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRP   75 (76)
T ss_dssp             EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCceEEEeccCCCChHHHHHHHHHHHHCCCchhcEEEEEeeEecCCCCHHHcCCCCCCEEEEEEcc
Confidence            9999999864   666 699999999999999999999999999999999999999999999   8999999874

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.2e-19  Score=124.61  Aligned_cols=71  Identities=21%  Similarity=0.301  Sum_probs=66.5

Q ss_pred             CceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEec
Q psy2142          48 NMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLL  118 (168)
Q Consensus        48 ~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvrll  118 (168)
                      .+|||+||+.+|  ++++|++++||++||++|++.+|+|+++|+|+|+|++|+|+.+|++|+   ++||||+++..
T Consensus         2 ~e~qi~Vk~~~G~~~~l~V~~~~tV~~lK~~I~~~~~ip~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lvi~~p   77 (80)
T d1ttna1           2 YECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQP   77 (80)
T ss_dssp             CSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCS
T ss_pred             CeEEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCcccEEEEECceEcCCCCcHHHcCCCCCCEEEEEecCC
Confidence            469999999875  889999999999999999999999999999999999999999999999   89999998653

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=3.8e-19  Score=124.53  Aligned_cols=73  Identities=16%  Similarity=0.256  Sum_probs=68.3

Q ss_pred             CCceEEEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecC
Q psy2142          47 ENMKRIIVRGQSN-YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLG  119 (168)
Q Consensus        47 ~~~MQIfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllG  119 (168)
                      +.+|+|+||+.++ ++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+   ++||+|+++...
T Consensus         5 ~~~i~I~Vkt~~~~~~~~V~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~D~~tL~~y~i~~gsti~lv~r~~~   81 (84)
T d1yqba1           5 PHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH   81 (84)
T ss_dssp             TTEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCC
T ss_pred             CCEEEEEEEcCCCcEEEEECCCCcHHHHHHHHHHHHCcCchhEEEEEeeeeccccCcHHHcCCCCCCEEEEEECCCC
Confidence            5679999999865 899999999999999999999999999999999999999999999998   899999987643

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=4.5e-19  Score=121.06  Aligned_cols=68  Identities=19%  Similarity=0.351  Sum_probs=64.1

Q ss_pred             ceEEEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEE
Q psy2142          49 MKRIIVRGQSN-YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVP  116 (168)
Q Consensus        49 ~MQIfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvr  116 (168)
                      .|+|+||..+. ++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+   +++|||+.+
T Consensus         1 si~I~Vk~~~~~~~i~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~I~~g~~i~lV~~   72 (73)
T d2bwfa1           1 SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS   72 (73)
T ss_dssp             EEEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred             CEEEEEEeCCeEEEEEECCCChHHHHHHHHHHHHCcChHHeEEEECCeEccCCCcHHHCCCCCCCEEEEEee
Confidence            38999999865 999999999999999999999999999999999999999999999998   899999864

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=1e-18  Score=119.59  Aligned_cols=66  Identities=20%  Similarity=0.386  Sum_probs=62.6

Q ss_pred             ceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceE
Q psy2142          49 MKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIF  114 (168)
Q Consensus        49 ~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lv  114 (168)
                      +|+|+||+..|  ++++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+   ++||+|.
T Consensus         1 mi~i~vk~~~Gk~~~v~V~~~~tV~~lK~~I~~~~~i~~~~q~Li~~Gk~L~d~~tL~~y~I~~gstl~L~   71 (73)
T d1m94a_           1 MIEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY   71 (73)
T ss_dssp             CEEEEEEETTTEEEEEEECTTSBHHHHHHHHHHHHCCTTTSEEEESSSCEECTTSBHHHHTCCTTEEEEEE
T ss_pred             CeEEEEECCCCCEEEEEECCcCcHHHHHHHHHHhhcccccEEEEEEEeEEecccCcHHHcCCCCCCEEEEE
Confidence            69999999865  889999999999999999999999999999999999999999999999   8899875

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.9e-18  Score=123.00  Aligned_cols=71  Identities=21%  Similarity=0.366  Sum_probs=64.7

Q ss_pred             eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcC---CCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142          50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEK---VALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG  120 (168)
Q Consensus        50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eG---Ip~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG  120 (168)
                      |+|+||+.++  ++|+|++++||.+||++|++..|   ||+++|+|+|+|+.|+|+.+|++|+   +++|+++++...+
T Consensus         1 M~I~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~~~~i~~~~qrLi~~Gk~L~d~~tL~~y~I~~~s~i~lv~~~~~~   79 (95)
T d1uela_           1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKA   79 (95)
T ss_dssp             CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCCC
T ss_pred             CEEEEEeCCCCEEEEEECCCccHHHHHHHHHhhhcccCCCccceEEEECCeEccCCCcHHHcCCCCCCEEEEEECCCCC
Confidence            9999999865  89999999999999999998765   8999999999999999999999998   8999998865443

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=1.5e-18  Score=121.26  Aligned_cols=70  Identities=19%  Similarity=0.305  Sum_probs=66.0

Q ss_pred             CCceEEEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEE
Q psy2142          47 ENMKRIIVRGQSN-YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVP  116 (168)
Q Consensus        47 ~~~MQIfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvr  116 (168)
                      +..|+|+||+.++ ++++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+   +++|+|+++
T Consensus         8 ~~~i~v~Vk~~~~~~~i~v~~~~tV~~lK~~I~~~~~v~~~~qrL~f~Gk~L~d~~tL~~~gI~~gs~I~lv~r   81 (83)
T d1wx8a1           8 SRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVR   81 (83)
T ss_dssp             SCEEEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBC
T ss_pred             CCeEEEEEEcCCCcEEEEECCCChHHHHHHHHHHHhCCChhHEEEEEEhhccccCCcHHHcCCCCCCEEEEEEe
Confidence            5679999999865 899999999999999999999999999999999999999999999998   899999875

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.4e-18  Score=118.33  Aligned_cols=68  Identities=25%  Similarity=0.417  Sum_probs=62.6

Q ss_pred             CceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcC---CCCCCeEEEEcCeecCCCCChhhhc---CCccceEE
Q psy2142          48 NMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEK---VALEDFSLICSGKTLTDDLSISDLE---SGSIEIFV  115 (168)
Q Consensus        48 ~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eG---Ip~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvv  115 (168)
                      +.|+|+||+.++  ++++|++++||.+||++|++..|   +|+++|+|+|+|++|+|+.+|++|+   ++++.+++
T Consensus         1 s~~~i~vk~l~g~~~~l~v~~~~TV~~lK~~i~~~~g~~~i~~~~qrLi~~Gk~L~D~~tL~~y~I~~~s~i~~~v   76 (77)
T d1oqya4           1 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMV   76 (77)
T ss_dssp             CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEE
T ss_pred             CcEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCChHHEEeEECCcCccCCCcHHHcCCCCCCEEEEEE
Confidence            469999999875  89999999999999999999877   9999999999999999999999999   77887765

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=6.2e-18  Score=122.31  Aligned_cols=70  Identities=16%  Similarity=0.289  Sum_probs=66.0

Q ss_pred             CCceEEEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEE
Q psy2142          47 ENMKRIIVRGQSN-YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVP  116 (168)
Q Consensus        47 ~~~MQIfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvr  116 (168)
                      +..|+|+||+.++ ++|+|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+   +++|||+++
T Consensus        30 ~~~i~V~Vk~~~~~~~i~V~~~~tV~~LK~~I~~~~gi~~~~qrLi~~Gk~L~D~~tL~~~~I~~g~~I~lvlr  103 (103)
T d1j8ca_          30 PKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIK  103 (103)
T ss_dssp             CCCEEEEEECSSCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC
T ss_pred             CCeEEEEEECCCccEEEEECCCChHHHHHHHHHHHHCcCHHHeeeeeeeecccCCCcHHHcCCCCCCEEEEEEC
Confidence            5679999999865 899999999999999999999999999999999999999999999998   899999875

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=9.1e-18  Score=115.53  Aligned_cols=66  Identities=18%  Similarity=0.249  Sum_probs=62.6

Q ss_pred             EEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEE--cCeecCCCCChhhhc---CCccceEEE
Q psy2142          51 RIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLIC--SGKTLTDDLSISDLE---SGSIEIFVP  116 (168)
Q Consensus        51 QIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy--~GK~LeD~~tL~dy~---~sTL~Lvvr  116 (168)
                      +|.||+.+|  ++++|++++||.+||++|++..|||+++|+|+|  +|++|+|+.+|++|+   +++|+|+++
T Consensus         2 ~l~Vk~l~G~~~~v~V~~~~tV~~lK~~I~~~~gip~~~QrLi~~~~Gk~L~D~~tL~~y~i~~g~~i~lv~~   74 (76)
T d1z2ma1           2 DLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVD   74 (76)
T ss_dssp             EEEEEESSSCEEEEECCSSCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCSSSCSGGGTCCTTCEEEEEEC
T ss_pred             EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhccCCccEEEEEcCCCeeccCCCcHHHcCCCCCCEEEEEEE
Confidence            799999865  899999999999999999999999999999999  799999999999999   899999985

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.70  E-value=5.7e-18  Score=125.11  Aligned_cols=73  Identities=18%  Similarity=0.215  Sum_probs=65.4

Q ss_pred             eEEEEEcC-C--ceEEEEcC-CCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCCcc
Q psy2142          50 KRIIVRGQ-S--NYVLECQQ-NETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGGKL  122 (168)
Q Consensus        50 MQIfVR~~-~--~~tleV~~-s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGGKv  122 (168)
                      ++|+|++. +  +++++|.+ ++||.+||++|++.+|||+++|+|+|+|+.|+|+.||++|+   ++||||+++++||..
T Consensus        30 i~V~v~~~~~G~~i~l~v~~~sdtV~~lK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ynI~~gsti~L~lr~rGG~~  109 (111)
T d1we6a_          30 IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRERSGPS  109 (111)
T ss_dssp             EEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSSCCSSC
T ss_pred             EEEEcccCCCCeEEEEEecCCccHHHHHHHHHHHHHCCCccceEEEEeeEEccccCCHHHcCCCCCCEEEEEeeCCCCCC
Confidence            55555544 3  38899987 89999999999999999999999999999999999999999   899999999999964

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=3.5e-17  Score=121.81  Aligned_cols=71  Identities=14%  Similarity=0.204  Sum_probs=63.8

Q ss_pred             eCCceEEEEEcCCc--eEEEEcCCCCHHHHHHHH--------hhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCc--
Q psy2142          46 IENMKRIIVRGQSN--YVLECQQNETVSHLKNKV--------ASLEKVALEDFSLICSGKTLTDDLSISDLE---SGS--  110 (168)
Q Consensus        46 ~~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI--------~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sT--  110 (168)
                      .+..|+|+|+..++  ++++|++++||.+||++|        ++..|+|+++|+|||.||+|+|+.+|++|+   +++  
T Consensus        13 ~~~~i~i~v~~l~Gk~~~~~v~p~~TV~~lK~~I~~~~p~~~~e~~~~~~~~qRLiy~Gk~L~D~~tL~~~~i~~g~~~~   92 (116)
T d1wgha_          13 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTV   92 (116)
T ss_dssp             CSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEE
T ss_pred             CCCeEEEEEEEcCCCEEEEEECCcchHHHHHHHHHhhcccccccccCCChHHeEEEECCEEecCCCCHHHcCCCCCCEEE
Confidence            57889999999876  889999999999999999        577899999999999999999999999999   666  


Q ss_pred             cceEEE
Q psy2142         111 IEIFVP  116 (168)
Q Consensus       111 L~Lvvr  116 (168)
                      |||+++
T Consensus        93 lhlv~r   98 (116)
T d1wgha_          93 MHLVAR   98 (116)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            666654

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=4.7e-17  Score=118.18  Aligned_cols=68  Identities=18%  Similarity=0.333  Sum_probs=63.2

Q ss_pred             CceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEE
Q psy2142          48 NMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFV  115 (168)
Q Consensus        48 ~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvv  115 (168)
                      ..++|+|++..|  +.|+|+|++||.+||++|++.+|+|+++|+|+|+|++|+|+.+|++|+   ++||+|..
T Consensus        27 ~~i~V~V~~~~Gk~~~v~V~p~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~dygI~~GstI~L~~   99 (100)
T d1uh6a_          27 TMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY   99 (100)
T ss_dssp             CEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred             ceEEEEEECCCCCEEEEEECCcChHHHHHHHHHHHHCCCcceEEEEEEeecccCcCCHHHcCCCCCCEEEEEE
Confidence            457999999754  999999999999999999999999999999999999999999999999   88998853

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.68  E-value=7e-17  Score=117.90  Aligned_cols=72  Identities=25%  Similarity=0.317  Sum_probs=64.6

Q ss_pred             CCceEEEEEcCCc--e-EEEEcCCCCHHHHHHHHhhh-----cCCC--CCCeEEEEcCeecCCCCChhhhc---CC----
Q psy2142          47 ENMKRIIVRGQSN--Y-VLECQQNETVSHLKNKVASL-----EKVA--LEDFSLICSGKTLTDDLSISDLE---SG----  109 (168)
Q Consensus        47 ~~~MQIfVR~~~~--~-tleV~~s~TV~~LK~kI~~~-----eGIp--~~~Q~Liy~GK~LeD~~tL~dy~---~s----  109 (168)
                      +..|+|.||..+|  + .+.+++++||.+||++|++.     +|||  +++|+|||+||+|+|+.||++|+   ++    
T Consensus         5 ~~~i~I~~r~~~G~~i~~~~v~~s~TV~~lK~~I~~~~~~~k~~iP~~~~~qRLIf~Gk~L~D~~tL~dy~i~~g~~~~~   84 (101)
T d1se9a_           5 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGA   84 (101)
T ss_dssp             CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTC
T ss_pred             cceEEEEEEeCCCCeecceecCccCHHHHHHHHHHHhccccccCCCCCcccEEEEECCeEecCCCCHHHcCCCCCCcCCC
Confidence            5789999999976  4 69999999999999999875     7898  88999999999999999999998   54    


Q ss_pred             --ccceEEEec
Q psy2142         110 --SIEIFVPLL  118 (168)
Q Consensus       110 --TL~Lvvrll  118 (168)
                        |+||++|..
T Consensus        85 ~~tmHlVvrpp   95 (101)
T d1se9a_          85 VTTMHVIIQAP   95 (101)
T ss_dssp             CEEEEEEECCC
T ss_pred             ceEEEEEeCCC
Confidence              899999764

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=7.1e-17  Score=113.80  Aligned_cols=60  Identities=18%  Similarity=0.195  Sum_probs=58.4

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecC
Q psy2142          60 YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLG  119 (168)
Q Consensus        60 ~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllG  119 (168)
                      ++|+|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.||++|+   +++|||+++++|
T Consensus        24 ~~l~v~~~~tV~~lK~~I~~~~~ip~~~q~Li~~Gk~L~D~~tL~dY~I~~gsti~l~~r~RG   86 (86)
T d1zkha1          24 LVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVIHLALKERG   86 (86)
T ss_dssp             EEEEECTTSBHHHHHHHHHHHTCCCTTTEEEEETTEEECTTSBHHHHTCCTTEEEEEEESCCC
T ss_pred             EEEEECCCChHHHHHHHHHhhhcCChHHEEEEeCCcCcCCCCCHHHcCCCCCCEEEEEEecCC
Confidence            889999999999999999999999999999999999999999999998   899999999887

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.3e-16  Score=113.85  Aligned_cols=73  Identities=23%  Similarity=0.296  Sum_probs=64.1

Q ss_pred             CCceEEEEEcCCc----eEEEEcCCCCHHHHHHHHhhhcC--CCCCCeEEEEcCeecCCCCChhhhc-----CCccceEE
Q psy2142          47 ENMKRIIVRGQSN----YVLECQQNETVSHLKNKVASLEK--VALEDFSLICSGKTLTDDLSISDLE-----SGSIEIFV  115 (168)
Q Consensus        47 ~~~MQIfVR~~~~----~tleV~~s~TV~~LK~kI~~~eG--Ip~~~Q~Liy~GK~LeD~~tL~dy~-----~sTL~Lvv  115 (168)
                      ...|+|+||++++    ++++|++++||.+||++|++..+  +|+++|+|||+|++|+|+.+|++|.     +.+|||++
T Consensus         5 s~~i~l~Ik~~~~~~~~~~~~v~~~~TV~~LK~~I~~~~~~~~~~~~qrLIy~Gk~L~D~~~L~d~~~~~~~~~viHLV~   84 (93)
T d1wgda_           5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC   84 (93)
T ss_dssp             SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred             CCcEEEEEECCCCCceeEEEEcCCCCcHHHHHHHHHHHcCCCCChHHEEEEECCeEccCCCCHHHhCcccCCCCEEEEEe
Confidence            4569999999753    88999999999999999999854  9999999999999999999999995     34899988


Q ss_pred             EecC
Q psy2142         116 PLLG  119 (168)
Q Consensus       116 rllG  119 (168)
                      ....
T Consensus        85 ~~~~   88 (93)
T d1wgda_          85 NVKS   88 (93)
T ss_dssp             CCCC
T ss_pred             cCCC
Confidence            6654

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=3.4e-17  Score=119.35  Aligned_cols=72  Identities=21%  Similarity=0.219  Sum_probs=66.5

Q ss_pred             CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeE---------------EEEcCeecCCC-CChhhhc-
Q psy2142          47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFS---------------LICSGKTLTDD-LSISDLE-  107 (168)
Q Consensus        47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~---------------Liy~GK~LeD~-~tL~dy~-  107 (168)
                      .+.|+|+||+.++  ++|+|++++||.+||++|++.++||+++|+               |+|+|+.|.|+ .+|++|+ 
T Consensus         5 ss~M~v~Vk~~~G~~~~v~V~~~~TV~~LK~~I~~~~~ip~~~Qr~~~~~~~~~~~~~~~Li~~G~~L~d~~~tL~~~gI   84 (105)
T d1v2ya_           5 SSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGI   84 (105)
T ss_dssp             CCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTC
T ss_pred             CCcEEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcCHHHhcccccccccccccceEEEECCEECcccCCCHHHcCC
Confidence            5789999999976  899999999999999999999999999997               99999999776 5899998 


Q ss_pred             --CCccceEEEec
Q psy2142         108 --SGSIEIFVPLL  118 (168)
Q Consensus       108 --~sTL~Lvvrll  118 (168)
                        ++||||+.++.
T Consensus        85 ~~g~~l~lv~r~~   97 (105)
T d1v2ya_          85 RNRDEVSFIKKLG   97 (105)
T ss_dssp             CSSEEEEEEECSC
T ss_pred             CCCCEEEEEEecC
Confidence              89999999874

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=2.9e-16  Score=113.98  Aligned_cols=74  Identities=16%  Similarity=0.177  Sum_probs=64.8

Q ss_pred             CCceEEEE----EcCC--ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecC-CCCChhhhc---CCccceEEE
Q psy2142          47 ENMKRIIV----RGQS--NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLT-DDLSISDLE---SGSIEIFVP  116 (168)
Q Consensus        47 ~~~MQIfV----R~~~--~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~Le-D~~tL~dy~---~sTL~Lvvr  116 (168)
                      ...|.|+|    |+.+  .++|+|++++||.+||+.|+...|||+++|+|+|+|+.|. |..||++|+   +++|+|+.+
T Consensus         5 ~~~m~itV~~~~~~~~~~t~~l~V~~~~tV~~LK~~Ie~~~gip~~~Q~Li~~Gk~L~dd~~tL~~~gI~~g~~i~l~~r   84 (102)
T d1v5oa_           5 SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQK   84 (102)
T ss_dssp             SCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred             cCCEEEEEEecccCCCCCEEEEEECCcccHHHHHHHHHHHhCCCcceEEEEeCCeEeecccCCHHHcCCCCCCEEEEEEC
Confidence            46799999    5654  3899999999999999999999999999999999999996 557999999   788988876


Q ss_pred             ecCC
Q psy2142         117 LLGG  120 (168)
Q Consensus       117 llGG  120 (168)
                      ..++
T Consensus        85 ~~~~   88 (102)
T d1v5oa_          85 DNVG   88 (102)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            6554

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=1.2e-15  Score=109.58  Aligned_cols=71  Identities=18%  Similarity=0.185  Sum_probs=63.0

Q ss_pred             CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecC-CCCChhhhc---CCccceEEEecCC
Q psy2142          47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLT-DDLSISDLE---SGSIEIFVPLLGG  120 (168)
Q Consensus        47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~Le-D~~tL~dy~---~sTL~LvvrllGG  120 (168)
                      .+.|+|+||+.++  ++|+|++++||.+||++|+   .+++++|+|+|.|+.|. |..+|++|+   +++||++++..++
T Consensus         5 ~s~m~i~vK~l~~~~~~v~v~~~~TV~~lK~~i~---~~~~~~qrLi~~Gk~L~dd~~tL~~y~i~~g~~v~l~~~~~~~   81 (95)
T d1wiaa_           5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYF---PGQESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPGA   81 (95)
T ss_dssp             CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHS---SSTTTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCCC
T ss_pred             CCcEEEEEEcCCCCEEEEEECCcCcHHHHHHHHh---cCCcceeEEEECCEEcccCCCCHHHcCCCCCCEEEEEEcCCCC
Confidence            5789999999976  8899999999999999986   46789999999999996 568999998   8999999877665

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=7.6e-16  Score=112.52  Aligned_cols=71  Identities=13%  Similarity=0.141  Sum_probs=60.7

Q ss_pred             EEEEEcC--C-ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc----------CCccceEEEe
Q psy2142          51 RIIVRGQ--S-NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE----------SGSIEIFVPL  117 (168)
Q Consensus        51 QIfVR~~--~-~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~----------~sTL~Lvvrl  117 (168)
                      ||||+..  + ++.++|++++||.+||++|++.+|||+++|+|+|+|++|+|+.||++||          .++++++++.
T Consensus         1 qifv~i~~~k~Ti~l~v~~~~TV~~lK~~I~~~~gip~~~QrLi~~Gk~L~D~~TL~dYgI~~~~~~~~~~~~~~l~~~~   80 (103)
T d2c9wb1           1 DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRA   80 (103)
T ss_dssp             CEEEEEEEBTEEEEEEECTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEEE
T ss_pred             CEEEEEeCCCEEEEEEeCCCCcHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCcccccccCCcEEEEEEec
Confidence            4666643  3 4789999999999999999999999999999999999999999999998          1367777776


Q ss_pred             cCCc
Q psy2142         118 LGGK  121 (168)
Q Consensus       118 lGGK  121 (168)
                      .|+.
T Consensus        81 ~~~~   84 (103)
T d2c9wb1          81 DDTF   84 (103)
T ss_dssp             TTEE
T ss_pred             CCCc
Confidence            6653

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=9.6e-16  Score=109.69  Aligned_cols=68  Identities=16%  Similarity=0.187  Sum_probs=62.0

Q ss_pred             CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEE
Q psy2142          47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFV  115 (168)
Q Consensus        47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvv  115 (168)
                      .+.|+|.||..++  ++|+|++++||.+||++|++.+|||+++|+|+|.|+.|+|+ +|++|+   +++|+|+.
T Consensus         5 s~~~~I~VK~~~~~~~~v~v~~~~tV~~lK~~i~~~~gvp~~~QkLi~~Gk~L~d~-tL~~~gi~~g~~i~lv~   77 (96)
T d1wgga_           5 SSGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMG   77 (96)
T ss_dssp             CCEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCC
T ss_pred             CCceEEEEEeCCCCEEEEEECCCCcHHHHHHHhhhhcCccceeeEEeecCcccCCC-cHHHCCCCCCCEEEEEe
Confidence            4679999999865  57999999999999999999999999999999999999986 799998   78888764

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.7e-15  Score=109.53  Aligned_cols=68  Identities=13%  Similarity=0.139  Sum_probs=60.4

Q ss_pred             CceEEEE--EcC--CceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEE
Q psy2142          48 NMKRIIV--RGQ--SNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFV  115 (168)
Q Consensus        48 ~~MQIfV--R~~--~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvv  115 (168)
                      +.|+|||  |..  ..++|+|++++||.+||++|++..|+|+++|+|+|+|++|+|+.||++|+   +++|+++.
T Consensus        16 ati~V~~~~~~~~g~~~~lev~~~~TV~~LK~~I~~~~gi~~~~qkLi~~Gk~L~d~~tL~~~gI~~~s~i~vi~   90 (100)
T d1wjua_          16 ATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLE   90 (100)
T ss_dssp             EEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEEC
T ss_pred             EEEEEEEeeccCCCeEEEEEECCCcHHHHHHHHHHHHHCCCCeeEEEEEcccCcCCCcCHHHcCCCCCCEEEEEE
Confidence            3578888  443  34999999999999999999999999999999999999999999999999   77887664

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=2e-15  Score=107.83  Aligned_cols=73  Identities=14%  Similarity=0.239  Sum_probs=66.2

Q ss_pred             CCceEEEEEcCC-ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142          47 ENMKRIIVRGQS-NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG  120 (168)
Q Consensus        47 ~~~MQIfVR~~~-~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG  120 (168)
                      ...|+|.|+..+ .|+|+|++++||.+||++|++.+|||+++|+|+|+|+ |+|+.+|++|+   +++|+|+....+|
T Consensus        15 ~~~i~v~V~~~~k~~~i~v~~~~TV~~LK~~I~~~tgvp~~~q~Li~~g~-l~D~~tL~~~~I~~gs~i~lvgs~~~g   91 (95)
T d1v86a_          15 KELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL-VPEDKTLREIKVTSGAKIMVVGSTISG   91 (95)
T ss_dssp             CCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSB-CCSSSBHHHHCCCTTEEEEECCSSCCC
T ss_pred             ccEEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEeccc-ccCCCcHHHCCCCCCCEEEEEecCCCC
Confidence            578999999765 4999999999999999999999999999999999997 99999999999   7899998776665

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=2.2e-15  Score=106.13  Aligned_cols=71  Identities=24%  Similarity=0.315  Sum_probs=64.2

Q ss_pred             CCceEEEEEcCCc-eEE-EEcCCCCHHHHHHHHhhhcCCCCCCeEEE---EcCeecCCCCChhhhc---CCccceEEEe
Q psy2142          47 ENMKRIIVRGQSN-YVL-ECQQNETVSHLKNKVASLEKVALEDFSLI---CSGKTLTDDLSISDLE---SGSIEIFVPL  117 (168)
Q Consensus        47 ~~~MQIfVR~~~~-~tl-eV~~s~TV~~LK~kI~~~eGIp~~~Q~Li---y~GK~LeD~~tL~dy~---~sTL~Lvvrl  117 (168)
                      ...|+|+||..+. +.+ +|++++||.+||++|++..|+|+++|+|+   |.|+.|+|+.+|++|+   +++|+|+...
T Consensus         5 s~~~~i~Vk~~~~~~~i~~v~~~~tV~~LK~~i~~~t~vp~~~QkLi~~~~~Gk~L~D~~tL~~~~i~~g~~i~lv~s~   83 (90)
T d1v5ta_           5 SSGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR   83 (90)
T ss_dssp             CCSCCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred             CCcEEEEEEECCeEEEEEEeCCCCcHHHHHHHHHHHHcCCHHHhhhhhhccCCcCCCCcCcHHHcCCCCCCEEEEEeeC
Confidence            4689999998754 777 79999999999999999999999999999   6999999999999998   7899987643

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=8.9e-15  Score=101.60  Aligned_cols=68  Identities=19%  Similarity=0.162  Sum_probs=60.1

Q ss_pred             ceEEEEEcCCc-eEEEE-----cCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecC-CCCChhhhc---CCccceEEE
Q psy2142          49 MKRIIVRGQSN-YVLEC-----QQNETVSHLKNKVASLEKVALEDFSLICSGKTLT-DDLSISDLE---SGSIEIFVP  116 (168)
Q Consensus        49 ~MQIfVR~~~~-~tleV-----~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~Le-D~~tL~dy~---~sTL~Lvvr  116 (168)
                      .|+|.|+..+. ++++|     ++++||++||++|++..|+|+++|+|+|+|+.|. |+.+|++|+   +++|+|+.+
T Consensus         1 gi~i~V~~~~~~~~i~v~~~~~~~~~Tv~~LK~~I~~~tgvp~~~QkL~~~G~~L~~d~~tL~~~gi~~g~~i~lv~~   78 (81)
T d1wxva1           1 GLTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK   78 (81)
T ss_dssp             SEEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred             CEEEEEEECCeeEEEEEecCCCCCccHHHHHHHHHHHHHCcCHHHEEeeecCeEeCcCCCChHHCCCCCCCEEEEEEe
Confidence            48999987754 88888     5788999999999999999999999999999996 568999998   889888764

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=99.45  E-value=1.3e-13  Score=94.78  Aligned_cols=73  Identities=16%  Similarity=0.293  Sum_probs=67.0

Q ss_pred             CceEEEEEcCCc-eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecCC
Q psy2142          48 NMKRIIVRGQSN-YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLGG  120 (168)
Q Consensus        48 ~~MQIfVR~~~~-~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllGG  120 (168)
                      ..+.|.|+..+. +.+.|.+++++..|++.+++..|+|+++|+|+|+|+.|+|+.|+++|+   +++|++++++.||
T Consensus         3 ~~I~ikv~~~~~~~~f~v~~~~~~~~l~~~~~~~~~i~~~~~~l~f~G~~l~~~~T~~~~~i~dgd~I~v~~~q~GG   79 (79)
T d1euvb_           3 THINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG   79 (79)
T ss_dssp             SEEEEEEESSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCBCC
T ss_pred             cEEEEEECCCCeEEEEEECCCCcHHHHHHHHHHHhCCChHhEEEEECCEEeCCCCCHHHCCCCCCCEEEEEEeccCC
Confidence            346778876544 778999999999999999999999999999999999999999999999   8999999999998

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=3e-13  Score=96.59  Aligned_cols=74  Identities=11%  Similarity=0.073  Sum_probs=64.9

Q ss_pred             CCceEEEEEcC-Cc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCe-------ecCCCCChhhhc---CCccce
Q psy2142          47 ENMKRIIVRGQ-SN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGK-------TLTDDLSISDLE---SGSIEI  113 (168)
Q Consensus        47 ~~~MQIfVR~~-~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK-------~LeD~~tL~dy~---~sTL~L  113 (168)
                      .+.|.|||+.. +.  +...+++++||.+||++|+...|+|+++|+|+|.|+       .++|+.+|++|+   +++|||
T Consensus         5 ss~v~v~I~s~~~~~~~E~r~~~~~TV~~LK~kle~~tGip~~~qrL~~~~~~~~~~~~l~~d~~~L~~y~i~dg~~ihl   84 (95)
T d1v6ea_           5 SSGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHV   84 (95)
T ss_dssp             CCCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEE
T ss_pred             CCcEEEEEEECCCCcEEEEEeCCCCCHHHHHHHHHHHhCcCchhEEEEEeCCCCceeecccCCcCCHHHCCCCCCCEEEE
Confidence            46799999986 43  678899999999999999999999999999999998       578999999998   899999


Q ss_pred             EEEecCC
Q psy2142         114 FVPLLGG  120 (168)
Q Consensus       114 vvrllGG  120 (168)
                      +.+...+
T Consensus        85 vd~~p~~   91 (95)
T d1v6ea_          85 IDHSGSG   91 (95)
T ss_dssp             BCCSCCS
T ss_pred             EeCCCCC
Confidence            8765443

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=2.5e-11  Score=82.72  Aligned_cols=71  Identities=17%  Similarity=0.351  Sum_probs=66.0

Q ss_pred             ceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceEEEecC
Q psy2142          49 MKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIFVPLLG  119 (168)
Q Consensus        49 ~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~LvvrllG  119 (168)
                      .|.|.|++.++  +.+.|.+++++..|++..++..|+|+++++|+|.|+.|.++.|+++++   +++|+++++..|
T Consensus         2 ~I~ikv~~~dg~~v~f~v~~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~l~~~~T~~~l~~edgD~Idv~~~q~G   77 (77)
T d2uyzb1           2 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG   77 (77)
T ss_dssp             EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC
T ss_pred             EEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCChhHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence            47899999987  668999999999999999999999999999999999999999999998   889999988765

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=1.3e-11  Score=88.47  Aligned_cols=66  Identities=20%  Similarity=0.221  Sum_probs=51.7

Q ss_pred             EEEEEcCCc-eEEEEcCCCCHHHHHHHHhhhc--CCC-CCCeEEEEcCeecCCCCChhhhc---CCccceEEE
Q psy2142          51 RIIVRGQSN-YVLECQQNETVSHLKNKVASLE--KVA-LEDFSLICSGKTLTDDLSISDLE---SGSIEIFVP  116 (168)
Q Consensus        51 QIfVR~~~~-~tleV~~s~TV~~LK~kI~~~e--GIp-~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lvvr  116 (168)
                      ..+|+.+++ ....+..+.||.+||+.|++..  ++| +++|+|||+|+.|+|+.+|++|+   ++||||+.+
T Consensus        20 k~~i~~p~~~~~~~~~~~~tV~~lK~~i~~~~~~~~P~p~~~rLIy~Gk~L~D~~tL~~y~I~~gstihLV~r   92 (94)
T d1x1ma1          20 KSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGSTVHVLRK   92 (94)
T ss_dssp             CEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTCEEEEEES
T ss_pred             cceEECCCCccCccCCCccCHHHHHHHHHHHcccCCCChhheEEEECCeEECCCccHHHcCCCCCCEEEEEEe
Confidence            455555542 1112345789999999998874  454 69999999999999999999998   899999975

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.12  E-value=7.5e-11  Score=83.85  Aligned_cols=67  Identities=13%  Similarity=0.153  Sum_probs=56.9

Q ss_pred             CceEEEEEcCC-----ceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCee-------cC-CCCChhhhc---CCcc
Q psy2142          48 NMKRIIVRGQS-----NYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKT-------LT-DDLSISDLE---SGSI  111 (168)
Q Consensus        48 ~~MQIfVR~~~-----~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~-------Le-D~~tL~dy~---~sTL  111 (168)
                      ..++|.|+..+     .++++|++++||.+||.+|+...|||+++|+|+|.|+.       |+ |+.+|++|+   +++|
T Consensus         8 ~~iti~i~~~~~~~~~~~~~kv~~~~TV~~LK~~i~~~~gip~~~qrL~y~~~~~~~~~~~l~~d~~tL~~YgI~dg~~I   87 (97)
T d1wjna_           8 QLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCL   87 (97)
T ss_dssp             CEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEE
T ss_pred             CeEEEEEEeCCCCCCceEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEecCCCCCcccceecCCCcCHhhccCCCCCEE
Confidence            44678887653     27899999999999999999999999999999999983       54 678999999   7788


Q ss_pred             ceE
Q psy2142         112 EIF  114 (168)
Q Consensus       112 ~Lv  114 (168)
                      ++.
T Consensus        88 ~V~   90 (97)
T d1wjna_          88 LVR   90 (97)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            764

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.97  E-value=7.4e-10  Score=77.67  Aligned_cols=66  Identities=11%  Similarity=0.103  Sum_probs=55.1

Q ss_pred             eEEEEEcCC-c--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCe-------ecCCCCChhhhc---CCccceEE
Q psy2142          50 KRIIVRGQS-N--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGK-------TLTDDLSISDLE---SGSIEIFV  115 (168)
Q Consensus        50 MQIfVR~~~-~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK-------~LeD~~tL~dy~---~sTL~Lvv  115 (168)
                      ..|.|.... +  ....++++.||.+||++|+...|+|++.|+|+|.|+       .++|+.+|++|+   +++||++=
T Consensus         5 ~~l~it~~~t~~~~E~r~~~~~TV~~LK~kle~~~Gip~~~q~L~~~~~~~~~~~~l~dd~~~L~~ygi~dG~~Ihvvd   83 (90)
T d1t0ya_           5 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVD   83 (90)
T ss_dssp             EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEE
T ss_pred             EEEEEEECCCccEEEEecCCCCCHHHHHHHHHHHHCCChhheEEEEeCCCCCcccccccCCCCHHHCCCCCCCEEEEEe
Confidence            456666543 3  456689999999999999999999999999999997       456889999999   78899854

>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=6e-06  Score=54.91  Aligned_cols=64  Identities=14%  Similarity=0.307  Sum_probs=57.3

Q ss_pred             eEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccce
Q psy2142          50 KRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEI  113 (168)
Q Consensus        50 MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~L  113 (168)
                      +.|.|++.++  +.+.|..++++..|...-++..|+++...+++|.|..|..+.|.++++   +.+|++
T Consensus         2 I~lkv~~~~g~~v~f~vk~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~i~~~~Tp~~l~med~D~Idv   70 (72)
T d1wm3a_           2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDV   70 (72)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEE
T ss_pred             EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEE
Confidence            4678888776  678999999999999999999999999999999999999999999998   566664

>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NPL4-like protein 1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.66  E-value=3.5e-05  Score=54.40  Aligned_cols=63  Identities=21%  Similarity=0.270  Sum_probs=49.3

Q ss_pred             EEEEcCCc-eEEEEcC-CCCHHHHHHHHhhhcCCCCCCeEEEEc--------------CeecCCC-CChhhhc---CCcc
Q psy2142          52 IIVRGQSN-YVLECQQ-NETVSHLKNKVASLEKVALEDFSLICS--------------GKTLTDD-LSISDLE---SGSI  111 (168)
Q Consensus        52 IfVR~~~~-~tleV~~-s~TV~~LK~kI~~~eGIp~~~Q~Liy~--------------GK~LeD~-~tL~dy~---~sTL  111 (168)
                      |-||+-+| .-|+|+. ..||.+||.+|++..++|.++|.|..+              -..|.|+ .+|++|+   |+.+
T Consensus         3 iRiRsrdG~eRv~v~~~~~Tl~~LK~~Ie~~L~VPv~~Q~LSl~~~llL~k~P~~~~~~~~l~d~~~~L~sl~i~hGsiv   82 (94)
T d1wf9a1           3 LRVRSRDGLERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSMV   82 (94)
T ss_dssp             EEEECSSCEEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCEE
T ss_pred             EEEEecCCceEEEecCCCCcHHHHHHHHHHHhCCCcccceeecChhhhccCCccccchhhhccCCccCHHHcCccCceEE
Confidence            56778777 5688964 679999999999999999999999553              3345554 6699998   6777


Q ss_pred             ceE
Q psy2142         112 EIF  114 (168)
Q Consensus       112 ~Lv  114 (168)
                      ++.
T Consensus        83 yL~   85 (94)
T d1wf9a1          83 YLA   85 (94)
T ss_dssp             ECC
T ss_pred             EEE
Confidence            764

>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Tether containing UBX domain for GLUT4 (Tug)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.99  E-value=0.011  Score=39.83  Aligned_cols=63  Identities=8%  Similarity=0.122  Sum_probs=53.2

Q ss_pred             EEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCChhhhc---CCccceE
Q psy2142          52 IIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDLSISDLE---SGSIEIF  114 (168)
Q Consensus        52 IfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~tL~dy~---~sTL~Lv  114 (168)
                      |.|=++++  .+|.|+|+.|+.++-++..+.+|+.+++-.|.|++++|+=..++.-.|   ++.|.|+
T Consensus         3 V~Vl~~~~rR~~VKvtP~t~l~~VL~eaC~k~~~~~~~~~Lkh~~k~ldLsl~~R~sgLpnnakLELv   70 (76)
T d2al3a1           3 VSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMV   70 (76)
T ss_dssp             EEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEE
T ss_pred             EEEECCCCcEEEEEeCCCcCHHHHHHHHHHHhCCChhHceeeeCCEEcCccceeeecCCCCCCEEEEE
Confidence            34445554  789999999999999999999999999999999999999888777666   6677765

>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Fas-associated factor 1, Faf1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.37  E-value=0.035  Score=36.44  Aligned_cols=60  Identities=15%  Similarity=0.269  Sum_probs=48.6

Q ss_pred             CCceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEE--EcCeecC---CCCChhhhc
Q psy2142          47 ENMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLI--CSGKTLT---DDLSISDLE  107 (168)
Q Consensus        47 ~~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Li--y~GK~Le---D~~tL~dy~  107 (168)
                      +....|-||.++|  ..-...+++||.+|.+-|.. .+.+++...|+  |-.+.|.   ++.||.+.|
T Consensus         3 e~~~~i~iRlPdG~~~~~~F~~~~tl~~v~~~v~~-~~~~~~~~~l~~~~Pr~~l~~~d~~~TL~e~g   69 (82)
T d1h8ca_           3 EPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVK   69 (82)
T ss_dssp             CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHH-HTCCSSSEEEEETTTTEETTTCCTTSBHHHHC
T ss_pred             CCcEEEEEECCCCCEEEEEECCCCcHHHHHHHHHh-cCCCCCceEEEecCcccccccccccCCHHHCC
Confidence            4556899999987  45688999999999999986 57777888887  5777883   457999998

>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: p47
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.09  E-value=0.21  Score=33.13  Aligned_cols=60  Identities=17%  Similarity=0.300  Sum_probs=48.2

Q ss_pred             CceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhh-cCCCCCCeEEEEc--CeecCC-CCChhhhc
Q psy2142          48 NMKRIIVRGQSN--YVLECQQNETVSHLKNKVASL-EKVALEDFSLICS--GKTLTD-DLSISDLE  107 (168)
Q Consensus        48 ~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~-eGIp~~~Q~Liy~--GK~LeD-~~tL~dy~  107 (168)
                      ..-.|-||.++|  ......+++||.+|.+-|... .+.+.....|+.+  -+.|.| +.||.++|
T Consensus        13 p~t~I~iRlPdG~~~~~~F~~~~tl~dv~~~v~~~~~~~~~~~f~L~t~~Prr~l~d~~~TL~e~g   78 (89)
T d1i42a_          13 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEAN   78 (89)
T ss_dssp             CCEEEEEEETTTCCEEEEECSSSCGGGHHHHHHHHCTTTSSCCEEEEETTTTEECCCCSSCSGGGT
T ss_pred             CcEEEEEEcCCCCEEEEEECCchhHHHHHHHHHHhCccCCCCCEEEecCCCCcccCCCcCcHHHCC
Confidence            345788999987  667899999999999999875 3667777888865  567854 68899999

>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: UBX domain-containing protein 6 (Reproduction 8)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.56  E-value=0.38  Score=31.84  Aligned_cols=59  Identities=12%  Similarity=0.096  Sum_probs=45.6

Q ss_pred             CceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEc--CeecC--CCCChhhhc
Q psy2142          48 NMKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLICS--GKTLT--DDLSISDLE  107 (168)
Q Consensus        48 ~~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~--GK~Le--D~~tL~dy~  107 (168)
                      ...+|-||.++|  ..-....++||.+|.+-|... +.......|+..  -+.|.  ++.||.++|
T Consensus        15 ~~~~i~iRlPdG~r~~r~F~~~dtl~~l~~fv~~~-~~~~~~f~l~~~~Pr~~~~~d~~~TL~e~g   79 (96)
T d2cr5a1          15 EVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIG   79 (96)
T ss_dssp             SEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHT
T ss_pred             CeEEEEEECCCCCEEEEEECCcccHHHHHHHHHHh-ccCcccceeecCCCceecCccCCCcHHHCC
Confidence            457899999987  455889999999999999764 455667777744  36664  357899998

>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: MoaD
domain: Molybdopterin synthase subunit MoaD
species: Pyrococcus furiosus [TaxId: 2261]

Probab=90.84  E-value=0.54  Score=30.30  Aligned_cols=56  Identities=13%  Similarity=0.165  Sum_probs=39.9

Q ss_pred             ceEEEEEcCC---------ceEEEEcCCCCHHHHHHHHhhhcCC-----------CCCCeEEEEcCeecCCCCChh
Q psy2142          49 MKRIIVRGQS---------NYVLECQQNETVSHLKNKVASLEKV-----------ALEDFSLICSGKTLTDDLSIS  104 (168)
Q Consensus        49 ~MQIfVR~~~---------~~tleV~~s~TV~~LK~kI~~~eGI-----------p~~~Q~Liy~GK~LeD~~tL~  104 (168)
                      .|+|.|+...         ..++++.+..||.+|.+.+.+..+-           .....++..+|+...++..|.
T Consensus         1 smkI~v~~Fa~lre~~G~~~~~~~~~~~~Tv~~l~~~L~~~~~~~~~~l~~~~~~~~~~i~iavN~~~~~~d~~L~   76 (88)
T d1vjka_           1 SVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDEELK   76 (88)
T ss_dssp             CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCTTCBCC
T ss_pred             CeEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHChHHHHHhhhccccccccEEEEEcceEcCCCcCcC
Confidence            4999999752         3678898999999999999876421           123445667887777666554

>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Hypothetical protein KIAA0794
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.16  E-value=0.51  Score=33.02  Aligned_cols=58  Identities=17%  Similarity=0.289  Sum_probs=45.4

Q ss_pred             ceEEEEEcCCc--eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEE--EcCeecC--C-CCChhhhc
Q psy2142          49 MKRIIVRGQSN--YVLECQQNETVSHLKNKVASLEKVALEDFSLI--CSGKTLT--D-DLSISDLE  107 (168)
Q Consensus        49 ~MQIfVR~~~~--~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Li--y~GK~Le--D-~~tL~dy~  107 (168)
                      .-.|-||.++|  +......++||.+|.+.|... +.+.....|+  |--+.|.  | +.||.+++
T Consensus        43 ~~~l~iRlPdG~r~~r~F~~~~tl~~l~~~v~~~-~~~~~~~~L~~~fPr~~l~~~d~~~TL~e~g  107 (124)
T d1wj4a_          43 KAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAG  107 (124)
T ss_dssp             EEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTT
T ss_pred             ceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-ccCCcceEEeecccccccccccccCcHHHcC
Confidence            47899999987  566889999999999999865 4566677776  4556663  3 57899998

>d1oeya_ d.15.2.2 (A:) Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.14  E-value=0.5  Score=31.70  Aligned_cols=48  Identities=17%  Similarity=0.153  Sum_probs=39.3

Q ss_pred             EEEEcCCceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCC
Q psy2142          52 IIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICSGKTLTDDL  101 (168)
Q Consensus        52 IfVR~~~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~GK~LeD~~  101 (168)
                      |.|..-=++.+++.+....++|.+.|+++..++++...|.|.  +.+++.
T Consensus         8 vkVh~~fTVal~v~~G~~y~~L~~lvs~KL~l~~~~~~LSY~--~~~~~e   55 (82)
T d1oeya_           8 LKVHYKYTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYR--PRDSNE   55 (82)
T ss_dssp             EEEESSSEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEEC--CTTCSS
T ss_pred             EEEEEEEEEEEEccCCCCHHHHHHHHHHHhCCChhheEEEec--cCCCCc
Confidence            344444567889999999999999999999999999999995  555443

>d1c1yb_ d.15.1.5 (B:) c-Raf1 RBD {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: c-Raf1 RBD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.14  E-value=1.6  Score=28.59  Aligned_cols=62  Identities=11%  Similarity=0.138  Sum_probs=43.3

Q ss_pred             eEEEEEcCCceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEEc-----C--eecCCCCChhhhcCCcc
Q psy2142          50 KRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLICS-----G--KTLTDDLSISDLESGSI  111 (168)
Q Consensus        50 MQIfVR~~~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy~-----G--K~LeD~~tL~dy~~sTL  111 (168)
                      +.+++=+.....++|.|++||.++=.++.+.-||+++.-.++-.     |  ++|..++..+.+.+..|
T Consensus         4 iRv~LPngq~T~V~vrpG~tird~L~k~l~kRgl~~~~c~V~~~~~~~~g~~~~l~~d~d~s~L~g~El   72 (77)
T d1c1yb_           4 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFRLLHEHKGKKARLDWNTDAASLIGEEL   72 (77)
T ss_dssp             EEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEEEEEGGGSSEEEEECTTSBGGGGTTCEE
T ss_pred             EEEECCCCCeEEEEecCCCCHHHHHHHHHHHcCCCHHHEEEEEeccCCCCcceeeccCCccccccCCEE
Confidence            33444222335589999999999999999999999988777642     3  56766665555544433

>d1wgra_ d.15.1.5 (A:) Growth factor receptor-bound protein 7, GRB-7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: Growth factor receptor-bound protein 7, GRB-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.13  E-value=0.92  Score=30.45  Aligned_cols=68  Identities=10%  Similarity=0.146  Sum_probs=45.2

Q ss_pred             ceEEEEEcCCceEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEE-----cC--eecCCCCChhhh-c----CCccceEEE
Q psy2142          49 MKRIIVRGQSNYVLECQQNETVSHLKNKVASLEKVALEDFSLIC-----SG--KTLTDDLSISDL-E----SGSIEIFVP  116 (168)
Q Consensus        49 ~MQIfVR~~~~~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy-----~G--K~LeD~~tL~dy-~----~sTL~Lvvr  116 (168)
                      .++||..+..+.+|.|++++|+.+|=+.+.+..+++.+...-+|     .|  +.|+|.+.+-+. .    .++..++++
T Consensus        11 vvkv~~~dg~~k~l~V~~~tTa~eV~~~l~~K~~~~~~~~f~L~E~~~~~~leR~L~d~E~vl~v~~~W~~~~~~r~v~r   90 (100)
T d1wgra_          11 VVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSRFVFR   90 (100)
T ss_dssp             EEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCEEEEC
T ss_pred             EEEEEecCCCEEEEEECCCCcHHHHHHHHHHHhCCCCCCCeEEEEecCCCcceeecCchHhHHHHHHcCCCCCCCEEEEe
Confidence            45666655445789999999999999999999987654433333     13  777776654443 2    345555554

>d1wxma1 d.15.1.5 (A:8-80) A-Raf proto-oncogene serine/threonine-protein kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: A-Raf proto-oncogene serine/threonine-protein kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.86  E-value=1.3  Score=28.74  Aligned_cols=42  Identities=12%  Similarity=0.078  Sum_probs=34.3

Q ss_pred             eEEEEcCCCCHHHHHHHHhhhcCCCCCCeEEEE--cC--eecCCCC
Q psy2142          60 YVLECQQNETVSHLKNKVASLEKVALEDFSLIC--SG--KTLTDDL  101 (168)
Q Consensus        60 ~tleV~~s~TV~~LK~kI~~~eGIp~~~Q~Liy--~G--K~LeD~~  101 (168)
                      ..++|.|++||.++=.++.+.-||+++.-.++-  +|  +++..++
T Consensus        13 T~V~vrpG~tir~~L~k~l~kRgl~~~~~~V~~~~~g~~~~i~~d~   58 (73)
T d1wxma1          13 TVVTVRDGMSVYDSLDKALKVRGLNQDCCVVYRLIKGRKTVTAWDT   58 (73)
T ss_dssp             EEEECCSSCBSHHHHHHHHHTTTCCSSSEEEEEESSSCEEEECSSS
T ss_pred             EEEEecCCCCHHHHHHHHHHHcCCCHHHEEEEEecCCCcceeecCC
Confidence            558999999999999999999999998877754  45  4665443