Psyllid ID: psy2143

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
MTESSLSSKSSAVVPRCFLGTVNRNTDIYNDRGEYRTRNFSTVEETQKKKRTFRKFTFRGVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKKLRKAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccEEEcccccccccccccHHHHHHccccccccccccccHHHHHcccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccccEEEEcccccEEEccccccEEEEEcccccEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccEcccccccccccccccEccccccccccHHHHHHHHHccccEEEEEEccccHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccEEHccccEEEEcHHcccEEEEEcccEEEEEEEc
Coil and Loop (DISEMBL)
mtesslsskssavvprcflgtvnrntdiyndrgeyrtrnfstVEETQKKKRTFrkftfrgvdldqlldmpTEQLMELMHCRARRRFARGIKRKPMALVKKLRKAkkeappnekpevVKTHLRNMIIVPEMVGSVVGvyngktfnqveik
Flexible Loop (DISEMBL)
mtesslsskssavvprcflgtvnrntdiyndrgeyrtrnfstveetqkkkrtfrkftfrgvdldqllDMPTEQLMELMHCRARRrfargikrkpmaLVKKlrkakkeappnekpevvktHLRNMIIVPEMVGSVVGvyngktfnqveik
Low Complexity Region (SEG)
MTEsslsskssAVVPRCFLGTVNRNTDIYNDRGEYRTRNFSTVEEtqkkkrtfrkftfrGVDLDQLLDMPTEQLMELMHCrarrrfarGIKRKPMALVKKLRkakkeappnekpevvkTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK
Disordered region (IsUnstruct)
************VVPRCFLGTVNRNTDIYNDRGEYRTRNFSTV*******RTFRKFTFRGVDLDQLLDMPTEQLMELMHCRARRRFARGIK*************************VKTHLRNMIIVPEMVGSVVGVYNGKTFN*****
Disordered Region (DISOPRED)
*******************GTVNRNTDIYN***********************RKFTFRGVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKKLRKA************VKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK
Disordered Region (DISEMBL)
************VVPRCFLGTVNRNTDIYNDRGEYRTRNFSTVEETQKKKRTFRKFTFRGVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVK**************PEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK
Disordered Region (DISPRO)
***************RCFLGTVNRNTDIYND*****************KKRTFRKFTFRGVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKKLRKAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTESSLSSKSSAVVPRCFLGTVNRNTDIYNDRGEYRTRNFSTVEETQKKKRTFRKFTFRGVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKKLRKAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	149	2.2.26 [Sep-21-2011]
Q945U1	153	40S ribosomal protein S15	N/A	N/A	0.718	0.699	0.775	3e-45
O65059	151	40S ribosomal protein S15	N/A	N/A	0.718	0.708	0.747	3e-43
P31674	154	40S ribosomal protein S15	yes	N/A	0.697	0.675	0.769	1e-42
Q9FY66	152	40S ribosomal protein S15	yes	N/A	0.677	0.664	0.732	2e-40
Q9FY65	150	40S ribosomal protein S15	no	N/A	0.677	0.673	0.762	2e-40
P34737	152	40S ribosomal protein S15	yes	N/A	0.684	0.671	0.705	9e-40
P62845	145	40S ribosomal protein S15	yes	N/A	0.718	0.737	0.775	2e-36
Q5RDI7	145	40S ribosomal protein S15	no	N/A	0.718	0.737	0.775	2e-36
P62844	145	40S ribosomal protein S15	yes	N/A	0.718	0.737	0.775	2e-36
P62843	145	40S ribosomal protein S15	yes	N/A	0.718	0.737	0.775	2e-36

>sp|Q945U1|RS15_ELAOL 40S ribosomal protein S15 OS=Elaeis oleifera GN=RPS15 PE=2 SV=1

 Score =  180 bits (457), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 83/107 (77%), Positives = 97/107 (90%)

Query: 43  VEETQKKKRTFRKFTFRGVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKKLR 102
           V   Q KKRTFRKF++RGVDLDQLLDM T++L++L H RARRRF RG+KRKPMAL+KKLR
Sbjct: 10  VGGAQPKKRTFRKFSYRGVDLDQLLDMGTDELVKLFHARARRRFQRGLKRKPMALIKKLR 69

Query: 103 KAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149
           KAK++APP EKPE V+THLRNMIIVPEM+GS++GVYNGKTFNQVEIK
Sbjct: 70  KAKRDAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIK 116

Elaeis oleifera (taxid: 80265)

>sp|O65059|RS15_PICMA 40S ribosomal protein S15 OS=Picea mariana GN=RPS15 PE=2 SV=1

 Score =  173 bits (438), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 80/107 (74%), Positives = 95/107 (88%)

Query: 43  VEETQKKKRTFRKFTFRGVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKKLR 102
           V   Q KKRTF+KF++RGVDLD LLDM +E+L++L H RARRRF RG+KR+PMAL+KKLR
Sbjct: 8   VGPVQPKKRTFKKFSYRGVDLDALLDMTSEELVKLFHARARRRFQRGLKRQPMALIKKLR 67

Query: 103 KAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149
           KAK+EAP  EKPE V+THLRNMIIVPEM+GS++GVYNGKTFNQVEIK
Sbjct: 68  KAKREAPSGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIK 114

Picea mariana (taxid: 3335)

>sp|P31674|RS15_ORYSJ 40S ribosomal protein S15 OS=Oryza sativa subsp. japonica GN=RPS15 PE=2 SV=2

 Score =  171 bits (433), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 80/104 (76%), Positives = 92/104 (88%)

Query: 46  TQKKKRTFRKFTFRGVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKKLRKAK 105
            Q KKRTFRK+++RGVDLD LLDM T+ L++L   RARRRF RG+KRKPMAL+KKLRKAK
Sbjct: 14  AQPKKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAK 73

Query: 106 KEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149
           K+AP  EKPE V+THLRNMIIVPEM+GS+VGVYNGKTFNQVEIK
Sbjct: 74  KDAPAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIK 117

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FY66|RS152_ARATH 40S ribosomal protein S15-2 OS=Arabidopsis thaliana GN=RPS15B PE=2 SV=1

 Score =  164 bits (415), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 74/101 (73%), Positives = 90/101 (89%)

Query: 49  KKRTFRKFTFRGVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKKLRKAKKEA 108
           KKRTF+KF+F+GVDLD LLDMPT+ L+EL   R RRR +RG+ RKPMAL+KKLRKAK +A
Sbjct: 15  KKRTFKKFSFKGVDLDALLDMPTDDLVELFPSRIRRRMSRGLTRKPMALIKKLRKAKLDA 74

Query: 109 PPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149
           P  EKPEVV+THLRNM+I+PEM+GS++GVYNGKTFNQ+EIK
Sbjct: 75  PAGEKPEVVRTHLRNMVIMPEMIGSIIGVYNGKTFNQIEIK 115

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FY65|RS153_ARATH 40S ribosomal protein S15-3 OS=Arabidopsis thaliana GN=RPS15C PE=2 SV=1

 Score =  164 bits (414), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 77/101 (76%), Positives = 88/101 (87%)

Query: 49  KKRTFRKFTFRGVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKKLRKAKKEA 108
           KKRTF+KF+FRGVDLD LLDM T+ L++L   R RRRF+RG+ RKPMAL+KKLRKAK EA
Sbjct: 13  KKRTFKKFSFRGVDLDALLDMSTDDLVKLFPSRIRRRFSRGLTRKPMALIKKLRKAKIEA 72

Query: 109 PPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149
           P  EKP  V+THLRNMIIVPEM+GSV+GVYNGKTFNQVEIK
Sbjct: 73  PAGEKPAAVRTHLRNMIIVPEMIGSVIGVYNGKTFNQVEIK 113

Arabidopsis thaliana (taxid: 3702)

>sp|P34737|RS15_PODAS 40S ribosomal protein S15 OS=Podospora anserina GN=RPS15 PE=3 SV=1

 Score =  162 bits (409), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 72/102 (70%), Positives = 93/102 (91%)

Query: 48  KKKRTFRKFTFRGVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKKLRKAKKE 107
           KKKRTFRKF++RGVDLD LLD+ +++L +++H RARR+  RG+KR+PM L+KKLRKAK+E
Sbjct: 14  KKKRTFRKFSYRGVDLDALLDLTSDELRDVVHARARRKINRGLKRRPMGLIKKLRKAKQE 73

Query: 108 APPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149
           A PNEKP++VKTHLR+MI+VPEM+GSVVG+Y+GK FNQVEIK
Sbjct: 74  AKPNEKPDLVKTHLRDMIVVPEMIGSVVGIYSGKEFNQVEIK 115

Podospora anserina (taxid: 5145)

>sp|P62845|RS15_RAT 40S ribosomal protein S15 OS=Rattus norvegicus GN=Rps15 PE=1 SV=2

 Score =  151 bits (381), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 83/107 (77%), Positives = 93/107 (86%)

Query: 43  VEETQKKKRTFRKFTFRGVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKKLR 102
            E  QKKKRTFRKFT+RGVDLDQLLDM  EQLM+L   R RRR  RG++RK  +L+K+LR
Sbjct: 2   AEVEQKKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLR 61

Query: 103 KAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149
           KAKKEAPP EKPEVVKTHLR+MII+PEMVGS+VGVYNGKTFNQVEIK
Sbjct: 62  KAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIK 108

Rattus norvegicus (taxid: 10116)

>sp|Q5RDI7|RS15_PONAB 40S ribosomal protein S15 OS=Pongo abelii GN=RPS15 PE=2 SV=3

 Score =  151 bits (381), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 83/107 (77%), Positives = 93/107 (86%)

Query: 43  VEETQKKKRTFRKFTFRGVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKKLR 102
            E  QKKKRTFRKFT+RGVDLDQLLDM  EQLM+L   R RRR  RG++RK  +L+K+LR
Sbjct: 2   AEVEQKKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLR 61

Query: 103 KAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149
           KAKKEAPP EKPEVVKTHLR+MII+PEMVGS+VGVYNGKTFNQVEIK
Sbjct: 62  KAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIK 108

Pongo abelii (taxid: 9601)

>sp|P62844|RS15_PIG 40S ribosomal protein S15 OS=Sus scrofa GN=RPS15 PE=2 SV=2

 Score =  151 bits (381), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 83/107 (77%), Positives = 93/107 (86%)

Query: 43  VEETQKKKRTFRKFTFRGVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKKLR 102
            E  QKKKRTFRKFT+RGVDLDQLLDM  EQLM+L   R RRR  RG++RK  +L+K+LR
Sbjct: 2   AEVEQKKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLR 61

Query: 103 KAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149
           KAKKEAPP EKPEVVKTHLR+MII+PEMVGS+VGVYNGKTFNQVEIK
Sbjct: 62  KAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIK 108

Sus scrofa (taxid: 9823)

>sp|P62843|RS15_MOUSE 40S ribosomal protein S15 OS=Mus musculus GN=Rps15 PE=2 SV=2

 Score =  151 bits (381), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 83/107 (77%), Positives = 93/107 (86%)

Query: 43  VEETQKKKRTFRKFTFRGVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKKLR 102
            E  QKKKRTFRKFT+RGVDLDQLLDM  EQLM+L   R RRR  RG++RK  +L+K+LR
Sbjct: 2   AEVEQKKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLR 61

Query: 103 KAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149
           KAKKEAPP EKPEVVKTHLR+MII+PEMVGS+VGVYNGKTFNQVEIK
Sbjct: 62  KAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIK 108

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
110671448	147	putative ribosomal protein S15 [Diaphori	0.731	0.741	0.981	3e-55
307173970	211	40S ribosomal protein S15 [Camponotus fl	0.744	0.526	0.864	1e-50
307200547	147	40S ribosomal protein S15 [Harpegnathos	0.731	0.741	0.880	2e-50
70909559	148	ribosomal protein S15e [Micromalthus deb	0.711	0.716	0.915	2e-50
156546898	147	PREDICTED: 40S ribosomal protein S15 [Na	0.731	0.741	0.880	3e-50
62083407	147	ribosomal protein S15 isoform B [Lysiphl	0.731	0.741	0.871	4e-50
62083505	147	ribosomal protein S15 isoform A [Lysiphl	0.731	0.741	0.871	7e-50
70909561	147	ribosomal protein S15e [Scarabaeus latic	0.704	0.714	0.923	7e-50
110757985	147	PREDICTED: 40S ribosomal protein S15 [Ap	0.731	0.741	0.880	1e-49
70909557	148	ribosomal protein S15e [Georissus sp. AP	0.718	0.722	0.878	1e-48

>gi|110671448|gb|ABG81975.1| putative ribosomal protein S15 [Diaphorina citri]

 Score =  219 bits (558), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 107/109 (98%), Positives = 108/109 (99%)

Query: 41  STVEETQKKKRTFRKFTFRGVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKK 100
           + VEETQKKKRTFRKFTFRGVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKK
Sbjct: 2   TEVEETQKKKRTFRKFTFRGVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKK 61

Query: 101 LRKAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149
           LRKAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK
Sbjct: 62  LRKAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 110

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307173970|gb|EFN64700.1| 40S ribosomal protein S15 [Camponotus floridanus]

 Score =  204 bits (518), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 96/111 (86%), Positives = 103/111 (92%)

Query: 39  NFSTVEETQKKKRTFRKFTFRGVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALV 98
           N +  +ETQKKKRTFRKFTFRGVDLDQLLDMP EQLM+LMH RARRRF+ G+KRK MALV
Sbjct: 64  NMAEADETQKKKRTFRKFTFRGVDLDQLLDMPNEQLMDLMHARARRRFSHGLKRKSMALV 123

Query: 99  KKLRKAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149
           KKLRKAKKE PPNEKPE+VKTHLRNMIIVPEMVGS+VGVYNGKTFNQVEIK
Sbjct: 124 KKLRKAKKETPPNEKPEIVKTHLRNMIIVPEMVGSIVGVYNGKTFNQVEIK 174

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307200547|gb|EFN80699.1| 40S ribosomal protein S15 [Harpegnathos saltator]

 Score =  203 bits (517), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 96/109 (88%), Positives = 103/109 (94%)

Query: 41  STVEETQKKKRTFRKFTFRGVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKK 100
           +  +ETQKKKRTFRKFTFRGVDLDQLLDMP EQLM+LMH RARRRF+ G+KRKPMALVKK
Sbjct: 2   AEADETQKKKRTFRKFTFRGVDLDQLLDMPNEQLMDLMHARARRRFSHGLKRKPMALVKK 61

Query: 101 LRKAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149
           LRKAKKE PPNEKPE+VKTHLRNMIIVPEMVGS+VGVYNGKTFNQVEIK
Sbjct: 62  LRKAKKETPPNEKPEIVKTHLRNMIIVPEMVGSIVGVYNGKTFNQVEIK 110

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|70909559|emb|CAJ17201.1| ribosomal protein S15e [Micromalthus debilis]

 Score =  203 bits (517), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 97/106 (91%), Positives = 102/106 (96%)

Query: 44  EETQKKKRTFRKFTFRGVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKKLRK 103
           +E  KKKRTFRKFTFRGVDLDQLLDMP EQLMELMH RARRRF+RG+KRKPMALVKKLRK
Sbjct: 6   DEAIKKKRTFRKFTFRGVDLDQLLDMPNEQLMELMHARARRRFSRGLKRKPMALVKKLRK 65

Query: 104 AKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149
           AKKEAPPNEKPE+VKTHLRNMIIVPEMVGS+VGVYNGKTFNQVEIK
Sbjct: 66  AKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGVYNGKTFNQVEIK 111

Source: Micromalthus debilis

Species: Micromalthus debilis

Genus: Micromalthus

Family: Micromalthidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156546898|ref|XP_001599736.1| PREDICTED: 40S ribosomal protein S15 [Nasonia vitripennis]

 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 96/109 (88%), Positives = 104/109 (95%)

Query: 41  STVEETQKKKRTFRKFTFRGVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKK 100
           + V+ET KKKRTFRKFTFRGVDLDQLLDMP +QLM+LMH RARRRF+ G+KRKPMALVKK
Sbjct: 2   AEVDETLKKKRTFRKFTFRGVDLDQLLDMPNDQLMDLMHARARRRFSHGLKRKPMALVKK 61

Query: 101 LRKAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149
           LRKAKKEAPPNEKPE+VKTHLRNMIIVPEMVGS+VGVYNGKTFNQVEIK
Sbjct: 62  LRKAKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGVYNGKTFNQVEIK 110

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|62083407|gb|AAX62428.1| ribosomal protein S15 isoform B [Lysiphlebus testaceipes]

 Score =  202 bits (514), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 95/109 (87%), Positives = 104/109 (95%)

Query: 41  STVEETQKKKRTFRKFTFRGVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKK 100
           + ++ET KKKRTFRKFT+RGVDLDQLLDMP EQLMELMH RARRRF+ G+KRKPMALVKK
Sbjct: 2   AEIDETLKKKRTFRKFTYRGVDLDQLLDMPNEQLMELMHSRARRRFSHGLKRKPMALVKK 61

Query: 101 LRKAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149
           LRKAKKEAPP+EKPE+VKTHLRNMIIVPEMVGS+VGVYNGKTFNQVEIK
Sbjct: 62  LRKAKKEAPPHEKPEIVKTHLRNMIIVPEMVGSIVGVYNGKTFNQVEIK 110

Source: Lysiphlebus testaceipes

Species: Lysiphlebus testaceipes

Genus: Lysiphlebus

Family: Braconidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|62083505|gb|AAX62477.1| ribosomal protein S15 isoform A [Lysiphlebus testaceipes]

 Score =  201 bits (512), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 95/109 (87%), Positives = 104/109 (95%)

Query: 41  STVEETQKKKRTFRKFTFRGVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKK 100
           + V+ET KKKRTFRKFT+RGVDLDQLLDMP +QLMELMH RARRRF+ G+KRKPMALVKK
Sbjct: 2   AEVDETLKKKRTFRKFTYRGVDLDQLLDMPNDQLMELMHARARRRFSHGLKRKPMALVKK 61

Query: 101 LRKAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149
           LRKAKKEAPP+EKPE+VKTHLRNMIIVPEMVGS+VGVYNGKTFNQVEIK
Sbjct: 62  LRKAKKEAPPHEKPEIVKTHLRNMIIVPEMVGSIVGVYNGKTFNQVEIK 110

Source: Lysiphlebus testaceipes

Species: Lysiphlebus testaceipes

Genus: Lysiphlebus

Family: Braconidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|70909561|emb|CAJ17202.1| ribosomal protein S15e [Scarabaeus laticollis]

 Score =  201 bits (511), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 97/105 (92%), Positives = 100/105 (95%)

Query: 45  ETQKKKRTFRKFTFRGVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKKLRKA 104
           E  KKKRTFRKFTFRGVDLDQLLDMP EQLMELMH RARRRF RG+KRKPMALVKKLRKA
Sbjct: 6   EEPKKKRTFRKFTFRGVDLDQLLDMPNEQLMELMHARARRRFNRGLKRKPMALVKKLRKA 65

Query: 105 KKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149
           KKEAPPNEKPE+VKTHLRNMIIVPEMVGS+VGVYNGKTFNQVEIK
Sbjct: 66  KKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGVYNGKTFNQVEIK 110

Source: Scarabaeus laticollis

Species: Scarabaeus laticollis

Genus: Scarabaeus

Family: Scarabaeidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110757985|ref|XP_624038.2| PREDICTED: 40S ribosomal protein S15 [Apis mellifera] gi|350407503|ref|XP_003488107.1| PREDICTED: 40S ribosomal protein S15-like [Bombus impatiens] gi|380030588|ref|XP_003698926.1| PREDICTED: 40S ribosomal protein S15-like [Apis florea]

 Score =  200 bits (509), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 96/109 (88%), Positives = 101/109 (92%)

Query: 41  STVEETQKKKRTFRKFTFRGVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKK 100
           +  EETQKKKRTFRKFTFRGVDLDQLLDMP EQLM LMH RARRRF+ G+KRK MALVKK
Sbjct: 2   AEAEETQKKKRTFRKFTFRGVDLDQLLDMPNEQLMVLMHARARRRFSHGLKRKSMALVKK 61

Query: 101 LRKAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149
           LRKAKKE PPNEKPE+VKTHLRNMIIVPEMVGS+VGVYNGKTFNQVEIK
Sbjct: 62  LRKAKKETPPNEKPEIVKTHLRNMIIVPEMVGSIVGVYNGKTFNQVEIK 110

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|70909557|emb|CAJ17200.1| ribosomal protein S15e [Georissus sp. APV-2005]

 Score =  197 bits (502), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 94/107 (87%), Positives = 100/107 (93%)

Query: 43  VEETQKKKRTFRKFTFRGVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKKLR 102
            EE  KKKRTFRKFT+RGVDLDQLLDM  EQLMELMH RARRRF+RG+KRKPMALVK LR
Sbjct: 5   AEEQVKKKRTFRKFTYRGVDLDQLLDMSNEQLMELMHARARRRFSRGLKRKPMALVKXLR 64

Query: 103 KAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149
           +AKKEAPPNEKPE+VKTHLRNMIIVPEMVGS+VGVYNGKTFNQVEIK
Sbjct: 65  QAKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGVYNGKTFNQVEIK 111

Source: Georissus sp. APV-2005

Species: Georissus sp. APV-2005

Genus: Georissus

Family: Georissidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
FB|FBgn0034138	148	RpS15 "Ribosomal protein S15"	0.604	0.608	0.6	2.3e-23
TAIR|locus:2184847	152	AT5G09490 [Arabidopsis thalian	0.604	0.592	0.555	5.5e-22
TAIR|locus:2184752	150	AT5G09500 [Arabidopsis thalian	0.604	0.6	0.577	1.5e-21
TAIR|locus:2184772	152	AT5G09510 [Arabidopsis thalian	0.604	0.592	0.566	3e-21
TAIR|locus:2018324	152	RPS15 "cytosolic ribosomal pro	0.604	0.592	0.566	3.9e-21
ASPGD|ASPL0000005393	182	AN5997 [Emericella nidulans (t	0.604	0.494	0.5	8e-21
UNIPROTKB|G4MYJ0	153	MGG_10370 "40S ribosomal prote	0.604	0.588	0.522	8e-21
TAIR|locus:2158382	149	AT5G43640 [Arabidopsis thalian	0.604	0.604	0.555	1.7e-20
ZFIN|ZDB-GENE-030131-9092	145	rps15 "ribosomal protein S15"	0.604	0.620	0.544	1.9e-19
UNIPROTKB|F1NNC3	153	RPS15 "40S ribosomal protein S	0.604	0.588	0.555	2.5e-19

FB|FBgn0034138 RpS15 "Ribosomal protein S15" [Drosophila melanogaster (taxid:7227)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 54/90 (60%), Positives = 60/90 (66%)

Query:    60 GVDLDQLLDMPTEQLMELMHCXXXXXXXXGIKRKPMALVKKLRXXXXXXXXXXXXXXXXT 119
             GVDLDQLLDMP  QL+ELMH         G+KRKPMAL+KKLR                T
Sbjct:    22 GVDLDQLLDMPNNQLVELMHSRARRRFSRGLKRKPMALIKKLRKAKKEAPPNEKPEIVKT 81

Query:   120 HLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149
             HLRNMIIVPEM GS++GVYNGK F QVE+K
Sbjct:    82 HLRNMIIVPEMTGSIIGVYNGKDFGQVEVK 111

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0003723 "RNA binding" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0000022 "mitotic spindle elongation" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

TAIR|locus:2184847 AT5G09490 [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 50/90 (55%), Positives = 60/90 (66%)

Query:    60 GVDLDQLLDMPTEQLMELMHCXXXXXXXXGIKRKPMALVKKLRXXXXXXXXXXXXXXXXT 119
             GVDLD LLDMPT+ L+EL           G+ RKPMAL+KKLR                T
Sbjct:    26 GVDLDALLDMPTDDLVELFPSRIRRRMSRGLTRKPMALIKKLRKAKLDAPAGEKPEVVRT 85

Query:   120 HLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149
             HLRNM+I+PEM+GS++GVYNGKTFNQ+EIK
Sbjct:    86 HLRNMVIMPEMIGSIIGVYNGKTFNQIEIK 115

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

TAIR|locus:2184752 AT5G09500 [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 52/90 (57%), Positives = 59/90 (65%)

Query:    60 GVDLDQLLDMPTEQLMELMHCXXXXXXXXGIKRKPMALVKKLRXXXXXXXXXXXXXXXXT 119
             GVDLD LLDM T+ L++L           G+ RKPMAL+KKLR                T
Sbjct:    24 GVDLDALLDMSTDDLVKLFPSRIRRRFSRGLTRKPMALIKKLRKAKIEAPAGEKPAAVRT 83

Query:   120 HLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149
             HLRNMIIVPEM+GSV+GVYNGKTFNQVEIK
Sbjct:    84 HLRNMIIVPEMIGSVIGVYNGKTFNQVEIK 113

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0005794 "Golgi apparatus" evidence=RCA

TAIR|locus:2184772 AT5G09510 [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 51/90 (56%), Positives = 59/90 (65%)

Query:    60 GVDLDQLLDMPTEQLMELMHCXXXXXXXXGIKRKPMALVKKLRXXXXXXXXXXXXXXXXT 119
             GVDLD LLDM T+ L++L           G+ RKPMAL+KKLR                T
Sbjct:    26 GVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREAPAGEKPEPVRT 85

Query:   120 HLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149
             HLRNMIIVPEM+GS++GVYNGKTFNQVEIK
Sbjct:    86 HLRNMIIVPEMIGSIIGVYNGKTFNQVEIK 115

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2018324 RPS15 "cytosolic ribosomal protein S15" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 51/90 (56%), Positives = 59/90 (65%)

Query:    60 GVDLDQLLDMPTEQLMELMHCXXXXXXXXGIKRKPMALVKKLRXXXXXXXXXXXXXXXXT 119
             GVDLD LLDM T+ L++L           G+ RKPMAL+KKLR                T
Sbjct:    26 GVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREAPQGEKPEPVRT 85

Query:   120 HLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149
             HLRNMIIVPEM+GS++GVYNGKTFNQVEIK
Sbjct:    86 HLRNMIIVPEMIGSIIGVYNGKTFNQVEIK 115

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

ASPGD|ASPL0000005393 AN5997 [Emericella nidulans (taxid:162425)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 45/90 (50%), Positives = 61/90 (67%)

Query:    60 GVDLDQLLDMPTEQLMELMHCXXXXXXXXGIKRKPMALVKKLRXXXXXXXXXXXXXXXXT 119
             G+DLDQLLD+ +EQL +++H         G+KRKPM L+KKLR                T
Sbjct:    56 GIDLDQLLDLSSEQLRDVVHARARRRFNRGLKRKPMGLIKKLRKAKQEAKPNEKPDLVKT 115

Query:   120 HLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149
             HLR+MI+VPEM+GSV+G+Y+GK FNQ+E+K
Sbjct:   116 HLRDMIVVPEMIGSVIGIYSGKEFNQIEVK 145

GO:0005730 "nucleolus" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0006407 "rRNA export from nucleus" evidence=IEA

UNIPROTKB|G4MYJ0 MGG_10370 "40S ribosomal protein S15" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 47/90 (52%), Positives = 61/90 (67%)

Query:    60 GVDLDQLLDMPTEQLMELMHCXXXXXXXXGIKRKPMALVKKLRXXXXXXXXXXXXXXXXT 119
             GVDLDQLLD+ ++QL +++H         G+KRKPM L+KKLR                T
Sbjct:    27 GVDLDQLLDLTSDQLRDVVHARARRRINRGLKRKPMGLIKKLRKAKQEAKPNEKPDLVKT 86

Query:   120 HLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149
             HLR+MI+VPEM+GSV+G+Y+GK FNQVEIK
Sbjct:    87 HLRDMIVVPEMIGSVIGIYSGKEFNQVEIK 116

GO:0043581 "mycelium development" evidence=IEP

TAIR|locus:2158382 AT5G43640 [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 50/90 (55%), Positives = 57/90 (63%)

Query:    60 GVDLDQLLDMPTEQLMELMHCXXXXXXXXGIKRKPMALVKKLRXXXXXXXXXXXXXXXXT 119
             GVDLD LLDM  E L++            G+ RKPMAL+KKLR                T
Sbjct:    23 GVDLDALLDMSIEDLVKHFSSRIRRRFSRGLTRKPMALIKKLRKAKMEAPAGEKPASVRT 82

Query:   120 HLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149
             HLRNMIIVPEM+GS++GVYNGKTFNQVEIK
Sbjct:    83 HLRNMIIVPEMIGSIIGVYNGKTFNQVEIK 112

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

ZFIN|ZDB-GENE-030131-9092 rps15 "ribosomal protein S15" [Danio rerio (taxid:7955)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 49/90 (54%), Positives = 59/90 (65%)

Query:    60 GVDLDQLLDMPTEQLMELMHCXXXXXXXXGIKRKPMALVKKLRXXXXXXXXXXXXXXXXT 119
             GVDLDQLLDM  EQLM+L           G++RK  +L+K+LR                T
Sbjct:    19 GVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQQSLLKRLRKAKKEAPPMEKPEVVKT 78

Query:   120 HLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149
             HLR+M+I+PEMVGS+VGVYNGKTFNQVEIK
Sbjct:    79 HLRDMVILPEMVGSMVGVYNGKTFNQVEIK 108

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0009790 "embryo development" evidence=IMP

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|F1NNC3 RPS15 "40S ribosomal protein S15" [Gallus gallus (taxid:9031)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 50/90 (55%), Positives = 59/90 (65%)

Query:    60 GVDLDQLLDMPTEQLMELMHCXXXXXXXXGIKRKPMALVKKLRXXXXXXXXXXXXXXXXT 119
             GVDLDQLLDM  EQLM+L           G++RK  +L+K+LR                T
Sbjct:    27 GVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKT 86

Query:   120 HLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149
             HLR+MII+PEMVGS+VGVYNGKTFNQVEIK
Sbjct:    87 HLRDMIILPEMVGSMVGVYNGKTFNQVEIK 116

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0000056 "ribosomal small subunit export from nucleus" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0042274 "ribosomal small subunit biogenesis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8ZWL4	RS19_PYRAE	No assigned EC number	0.4270	0.6375	0.6012	yes	N/A
A6VHD6	RS19_METM7	No assigned EC number	0.3333	0.7852	0.7267	yes	N/A
Q9YF74	RS19_AERPE	No assigned EC number	0.4183	0.6442	0.6666	yes	N/A
A8AA18	RS19_IGNH4	No assigned EC number	0.4123	0.6442	0.6906	yes	N/A
O65059	RS15_PICMA	No assigned EC number	0.7476	0.7181	0.7086	N/A	N/A
Q975I5	RS19_SULTO	No assigned EC number	0.4062	0.6241	0.6642	yes	N/A
Q9XVP0	RS15_CAEEL	No assigned EC number	0.6764	0.6845	0.6754	yes	N/A
Q08112	RS151_ARATH	No assigned EC number	0.7524	0.6778	0.6644	no	N/A
P34737	RS15_PODAS	No assigned EC number	0.7058	0.6845	0.6710	yes	N/A
P62845	RS15_RAT	No assigned EC number	0.7757	0.7181	0.7379	yes	N/A
A2BMB3	RS19_HYPBU	No assigned EC number	0.4583	0.6375	0.6597	yes	N/A
Q5JDH3	RS19_PYRKO	No assigned EC number	0.4479	0.6174	0.6917	yes	N/A
P31674	RS15_ORYSJ	No assigned EC number	0.7692	0.6979	0.6753	yes	N/A
Q6LX07	RS19_METMP	No assigned EC number	0.3416	0.7852	0.7267	yes	N/A
Q56K10	RS15_BOVIN	No assigned EC number	0.7663	0.7181	0.7379	yes	N/A
Q01855	RS15_YEAST	No assigned EC number	0.6037	0.7114	0.7464	yes	N/A
Q5RDI7	RS15_PONAB	No assigned EC number	0.7757	0.7181	0.7379	no	N/A
P62842	RS15_MESAU	No assigned EC number	0.7757	0.7181	0.7379	N/A	N/A
P62843	RS15_MOUSE	No assigned EC number	0.7757	0.7181	0.7379	yes	N/A
P62841	RS15_HUMAN	No assigned EC number	0.7757	0.7181	0.7379	yes	N/A
P62846	RS15_CHICK	No assigned EC number	0.7757	0.7181	0.7379	yes	N/A
P62844	RS15_PIG	No assigned EC number	0.7757	0.7181	0.7379	yes	N/A
O94715	RS15A_SCHPO	No assigned EC number	0.6666	0.6845	0.6666	yes	N/A
Q4JB44	RS19_SULAC	No assigned EC number	0.4270	0.6241	0.6642	yes	N/A
A3DNB1	RS19_STAMF	No assigned EC number	0.4062	0.6375	0.6643	yes	N/A
O26114	RS19_METTH	No assigned EC number	0.3958	0.6442	0.7058	yes	N/A
A3CT01	RS19_METMJ	No assigned EC number	0.4074	0.6577	0.7153	yes	N/A
A3MTT6	RS19_PYRCJ	No assigned EC number	0.4270	0.6375	0.6012	yes	N/A
Q9UTQ6	RS15B_SCHPO	No assigned EC number	0.6764	0.6845	0.6623	yes	N/A
P20342	RS15_XENLA	No assigned EC number	0.7391	0.6174	0.6344	N/A	N/A
A5UL85	RS19_METS3	No assigned EC number	0.4148	0.6308	0.6911	yes	N/A
A7I5P3	RS19_METB6	No assigned EC number	0.4095	0.6375	0.6834	yes	N/A
Q9FIX6	RS155_ARATH	No assigned EC number	0.7425	0.6778	0.6778	no	N/A
Q945U1	RS15_ELAOL	No assigned EC number	0.7757	0.7181	0.6993	N/A	N/A
Q8TWP2	RS19_METKA	No assigned EC number	0.41	0.6711	0.6711	yes	N/A
P70066	RS15_XIPMA	No assigned EC number	0.7745	0.6845	0.7034	N/A	N/A
A1RWQ5	RS19_THEPD	No assigned EC number	0.4693	0.6308	0.6666	yes	N/A
A6UV64	RS19_META3	No assigned EC number	0.325	0.7919	0.7283	yes	N/A
A9A9B4	RS19_METM6	No assigned EC number	0.3416	0.7852	0.7267	yes	N/A
Q9FY65	RS153_ARATH	No assigned EC number	0.7623	0.6778	0.6733	no	N/A
Q9FY64	RS154_ARATH	No assigned EC number	0.7524	0.6778	0.6644	no	N/A
Q54N17	RS15_DICDI	No assigned EC number	0.5576	0.6912	0.7152	yes	N/A
Q9FY66	RS152_ARATH	No assigned EC number	0.7326	0.6778	0.6644	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	149
PTZ00096	143	PTZ00096, PTZ00096, 40S ribosomal protein S15; Pro	1e-59
TIGR01025	135	TIGR01025, rpsS_arch, ribosomal protein S19(archae	2e-44
PRK04038	134	PRK04038, rps19p, 30S ribosomal protein S19P; Prov	1e-31
pfam00203	81	pfam00203, Ribosomal_S19, Ribosomal protein S19	6e-26
COG0185	93	COG0185, RpsS, Ribosomal protein S19 [Translation,	9e-18
PRK00357	92	PRK00357, rpsS, 30S ribosomal protein S19; Reviewe	3e-07
TIGR01050	92	TIGR01050, rpsS_bact, ribosomal protein S19, bacte	4e-06
CHL00050	92	CHL00050, rps19, ribosomal protein S19	3e-05

>gnl|CDD|185442 PTZ00096, PTZ00096, 40S ribosomal protein S15; Provisional

 Score =  180 bits (460), Expect = 1e-59
 Identities = 74/105 (70%), Positives = 85/105 (80%)

Query: 45  ETQKKKRTFRKFTFRGVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKKLRKA 104
           E  KKKRTF+KFT+RGV+L++LL +P E+L+EL   R RRR  RGIKRK   L+KKLRKA
Sbjct: 4   EQLKKKRTFKKFTYRGVELEKLLALPEEELVELFRARQRRRINRGIKRKHPTLLKKLRKA 63

Query: 105 KKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149
           KK   P EKP+ VKTHLR+MIIVPEMVGSVVGVYNGK FN VEIK
Sbjct: 64  KKATKPGEKPKAVKTHLRDMIIVPEMVGSVVGVYNGKQFNNVEIK 108

Length = 143

>gnl|CDD|130097 TIGR01025, rpsS_arch, ribosomal protein S19(archaeal)/S15(eukaryotic)

 Score =  141 bits (358), Expect = 2e-44
 Identities = 61/98 (62%), Positives = 75/98 (76%)

Query: 52  TFRKFTFRGVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKKLRKAKKEAPPN 111
           TF++F +RG  L++L DM  E+L +L+  R RRR  RG+  K   L+KKLRKAKKEAP  
Sbjct: 1   TFKEFRYRGYTLEELQDMSLEELAKLLPARQRRRLKRGLTPKQKKLLKKLRKAKKEAPKG 60

Query: 112 EKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149
           EKPEV++TH R+MII+PEMVGS VGVYNGK F QVEIK
Sbjct: 61  EKPEVIRTHCRDMIILPEMVGSTVGVYNGKEFVQVEIK 98

This model represents eukaryotic ribosomal protein S15 and its archaeal equivalent. It excludes bacterial and organellar ribosomal protein S19. The nomenclature for the archaeal members is unresolved and given variously as S19 (after the more distant bacterial homologs) or S15 [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 135

>gnl|CDD|235209 PRK04038, rps19p, 30S ribosomal protein S19P; Provisional

 Score =  109 bits (275), Expect = 1e-31
 Identities = 43/96 (44%), Positives = 66/96 (68%), Gaps = 3/96 (3%)

Query: 54  RKFTFRGVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKKLRKAKKEAPPNEK 113
           ++FT+RG  L++L +M  E+  EL+  R RR   RG+  +   L++K+RKA++E    +K
Sbjct: 5   KEFTYRGYTLEELQEMSLEEFAELLPARQRRSLKRGLTPEQRKLLEKIRKARREK---KK 61

Query: 114 PEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149
             V++TH+R+MII+PEMVG  + VYNGK F +VEI 
Sbjct: 62  GRVIRTHVRDMIILPEMVGLTIAVYNGKEFVEVEIV 97

Length = 134

>gnl|CDD|201079 pfam00203, Ribosomal_S19, Ribosomal protein S19

 Score = 93.2 bits (232), Expect = 6e-26
 Identities = 32/62 (51%), Positives = 38/62 (61%), Gaps = 1/62 (1%)

Query: 88  RGIKRKPMALVKKLRKAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVE 147
           R +K+ P   +K LRK KKE   NEK EV+KT  R   I+PEMVG  + VYNGK F  V 
Sbjct: 1   RSLKKGPFVDLKLLRKIKKENTKNEK-EVIKTWSRRSTILPEMVGHTIAVYNGKEFVPVY 59

Query: 148 IK 149
           I 
Sbjct: 60  IT 61

Length = 81

>gnl|CDD|223263 COG0185, RpsS, Ribosomal protein S19 [Translation, ribosomal structure and biogenesis]

 Score = 72.6 bits (179), Expect = 9e-18
 Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 7/66 (10%)

Query: 87  ARGIKRKPMA---LVKKLRKAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTF 143
            R +K+ P     L+KK+RKAK+      K + +KT  R   I+PEMVG  + V+NGK F
Sbjct: 2   RRSLKKGPFVDKHLLKKVRKAKES----GKKKPIKTWSRRSTILPEMVGLTIAVHNGKKF 57

Query: 144 NQVEIK 149
             VEI 
Sbjct: 58  VPVEIT 63

Length = 93

>gnl|CDD|178985 PRK00357, rpsS, 30S ribosomal protein S19; Reviewed

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 7/65 (10%)

Query: 87  ARGIKRKPMA---LVKKLRKAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTF 143
           AR +K+ P     L+KK+ KA +    +   +V+KT  R   I+PE VG  + V+NG+  
Sbjct: 2   ARSLKKGPFVDGHLLKKVEKANE----SGDKKVIKTWSRRSTILPEFVGLTIAVHNGRKH 57

Query: 144 NQVEI 148
             V +
Sbjct: 58  VPVYV 62

Length = 92

>gnl|CDD|130122 TIGR01050, rpsS_bact, ribosomal protein S19, bacterial/organelle

 Score = 42.3 bits (100), Expect = 4e-06
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 7/66 (10%)

Query: 87  ARGIKRKPMA---LVKKLRKAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTF 143
           +R +K+ P     L+KK+ K  +      K +V+KT  R   I+PEM+G  + V+NGK F
Sbjct: 2   SRSLKKGPFVDHHLLKKVEKLNES----GKKKVIKTWSRRSTIIPEMIGHTIAVHNGKKF 57

Query: 144 NQVEIK 149
             V I 
Sbjct: 58  IPVYIT 63

The homologous protein of the eukaryotic cytosol and of the Archaea may be designated S15 or S19 [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 92

>gnl|CDD|176991 CHL00050, rps19, ribosomal protein S19

 Score = 39.9 bits (94), Expect = 3e-05
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 87  ARGIKRKPMALVKKLRKAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTF 143
            R +K+ P      L+K +K     EK E++ T  R   I+P M+G  + V+NGK  
Sbjct: 2   TRSLKKNPFVANHLLKKIEKLNTKEEK-EIIVTWSRASTIIPTMIGHTIAVHNGKEH 57

Length = 92

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	149
PTZ00096	143	40S ribosomal protein S15; Provisional	100.0
KOG0898|consensus	152		100.0
TIGR01025	135	rpsS_arch ribosomal protein S19(archaeal)/S15(euka	100.0
PRK04038	134	rps19p 30S ribosomal protein S19P; Provisional	100.0
COG0185	93	RpsS Ribosomal protein S19 [Translation, ribosomal	99.92
CHL00050	92	rps19 ribosomal protein S19	99.84
PRK00357	92	rpsS 30S ribosomal protein S19; Reviewed	99.84
TIGR01050	92	rpsS_bact ribosomal protein S19, bacterial/organel	99.84
PLN03147	92	ribosomal protein S19; Provisional	99.78
PF00203	81	Ribosomal_S19: Ribosomal protein S19; InterPro: IP	99.78
KOG0899|consensus	93		99.67
PF03131	92	bZIP_Maf: bZIP Maf transcription factor; InterPro:	84.85

>PTZ00096 40S ribosomal protein S15; Provisional

Probab=100.00  E-value=3.8e-46  Score=291.71  Aligned_cols=106  Identities=70%  Similarity=1.072  Sum_probs=102.2

Q ss_pred             hHHhhcccceeeeEEecCCchHhhCCChHHHHHHhhhhhhhhhcCCCCcchhHHHHHHHHHhhcCCCCCCCceEEecccc
Q psy2143          44 EETQKKKRTFRKFTFRGVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKKLRKAKKEAPPNEKPEVVKTHLRN  123 (149)
Q Consensus        44 ~~~~~kkrtfkkFtYRG~~leeL~~Ms~eel~~LlpaR~RRsl~RGl~~k~~~LLkKlrkakk~~~~geKp~~IKThsR~  123 (149)
                      .++++|+|+|++|+|||++||||++||+|||++|+||||||+|.||+..+|.+||+||+++++++++++||++|+||+|+
T Consensus         3 ~~~~~k~r~~k~f~yRG~~l~~L~~m~~~e~~~L~~aR~RR~~~RGl~~~~~~LlkKirk~~~~~~~~~k~~~ikT~~R~   82 (143)
T PTZ00096          3 YEQLKKKRTFKKFTYRGVELEKLLALPEEELVELFRARQRRRINRGIKRKHPTLLKKLRKAKKATKPGEKPKAVKTHLRD   82 (143)
T ss_pred             ccccccccccceeeeecCCHHHHHcCCHHHHHHHcCcccccccccCCCHHHHHHHHHHHHHhhhcccccCCcceeEeccc
Confidence            35678889999999999999999999999999999999999999999999999999999999998889999999999999


Q ss_pred             ceeccCcccceEEEeeCCceeeEeeC
Q psy2143         124 MIIVPEMVGSVVGVYNGKTFNQVEIK  149 (149)
Q Consensus       124 siIlPemVG~tv~VyNGK~Fv~V~Ik  149 (149)
                      |+|||+|||++|+|||||+|++|+|+
T Consensus        83 ~~IlP~mVG~ti~VyNGK~fv~V~I~  108 (143)
T PTZ00096         83 MIIVPEMVGSVVGVYNGKQFNNVEIK  108 (143)
T ss_pred             CeeCccccCcEEEEEcCCeeEeeEec
Confidence            99999999999999999999999996

>KOG0898|consensus

Probab=100.00  E-value=2e-45  Score=288.21  Aligned_cols=103  Identities=83%  Similarity=1.214  Sum_probs=101.6

Q ss_pred             hhcccceeeeEEecCCchHhhCCChHHHHHHhhhhhhhhhcCCCCcchhHHHHHHHHHhhcCCCCCCCceEEecccccee
Q psy2143          47 QKKKRTFRKFTFRGVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKKLRKAKKEAPPNEKPEVVKTHLRNMII  126 (149)
Q Consensus        47 ~~kkrtfkkFtYRG~~leeL~~Ms~eel~~LlpaR~RRsl~RGl~~k~~~LLkKlrkakk~~~~geKp~~IKThsR~siI  126 (149)
                      ++|||||++|+|||++||+|+|||.+||++|+|||+||+++|||+.++..||++||+|++++++++||++|+||.|||||
T Consensus        13 ~kKKRTFrkftyrGVdld~Lldms~~~~~~l~~ar~rrR~~RGL~~k~~~liKklrkAkk~A~~~ekpe~VkTHlR~mII   92 (152)
T KOG0898|consen   13 LKKKRTFRKFTYRGVDLDQLLDMSTEQLVKLFPARQRRRLNRGLTRKPHSLIKKLRKAKKEAPPMEKPEVVKTHLRNMII   92 (152)
T ss_pred             HhhhhhhhhccccCCCHHHHhcCCHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHhhcCcccCcHHHHHHhhccee
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCcccceEEEeeCCceeeEeeC
Q psy2143         127 VPEMVGSVVGVYNGKTFNQVEIK  149 (149)
Q Consensus       127 lPemVG~tv~VyNGK~Fv~V~Ik  149 (149)
                      +|||||+.|||||||.|++||||
T Consensus        93 ~PEMvGs~VGVyNGK~FnqvEiK  115 (152)
T KOG0898|consen   93 VPEMVGSMVGVYNGKTFNQVEIK  115 (152)
T ss_pred             eHhhhcceEEEecCcccceeecc
Confidence            99999999999999999999996

>TIGR01025 rpsS_arch ribosomal protein S19(archaeal)/S15(eukaryotic)

Probab=100.00  E-value=5.8e-42  Score=265.99  Aligned_cols=98  Identities=62%  Similarity=0.988  Sum_probs=93.8

Q ss_pred             ceeeeEEecCCchHhhCCChHHHHHHhhhhhhhhhcCCCCcchhHHHHHHHHHhhcCCCCCCCceEEeccccceeccCcc
Q psy2143          52 TFRKFTFRGVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKKLRKAKKEAPPNEKPEVVKTHLRNMIIVPEMV  131 (149)
Q Consensus        52 tfkkFtYRG~~leeL~~Ms~eel~~LlpaR~RRsl~RGl~~k~~~LLkKlrkakk~~~~geKp~~IKThsR~siIlPemV  131 (149)
                      +|++|+|||+++|+|++|+++||++|+||||||+++||+++.+.+||+||+++++.+..+++|++||||+|+|+|+|+||
T Consensus         1 ~~~~f~yrG~~l~~L~~m~~~e~~~l~~ar~RRs~~RG~~~~~~~Llkki~k~~~~~~~g~k~~~IKT~sR~s~IlP~~V   80 (135)
T TIGR01025         1 TFKEFRYRGYTLEELQDMSLEELAKLLPARQRRRLKRGLTPKQKKLLKKLRKAKKEAPKGEKPEVIRTHCRDMIILPEMV   80 (135)
T ss_pred             CCceEeecccCHHHHHcCCHHHHHHHcCcccCcccccCCchhhHHHHHHHHHHHhccccccCCcceEEeccCCeeChhhc
Confidence            58999999999999999999999999999999999999999999999999999877666778899999999999999999


Q ss_pred             cceEEEeeCCceeeEeeC
Q psy2143         132 GSVVGVYNGKTFNQVEIK  149 (149)
Q Consensus       132 G~tv~VyNGK~Fv~V~Ik  149 (149)
                      |++|+|||||.|++|+|+
T Consensus        81 G~ti~VyNGk~fv~v~I~   98 (135)
T TIGR01025        81 GSTVGVYNGKEFVQVEIK   98 (135)
T ss_pred             CcEEEEEcCCeeEEEEec
Confidence            999999999999999996

This model represents eukaryotic ribosomal protein S15 and its archaeal equivalent. It excludes bacterial and organellar ribosomal protein S19. The nomenclature for the archaeal members is unresolved and given variously as S19 (after the more distant bacterial homologs) or S15.

>PRK04038 rps19p 30S ribosomal protein S19P; Provisional

Probab=100.00  E-value=1.3e-41  Score=263.76  Aligned_cols=96  Identities=45%  Similarity=0.829  Sum_probs=90.6

Q ss_pred             cceeeeEEecCCchHhhCCChHHHHHHhhhhhhhhhcCCCCcchhHHHHHHHHHhhcCCCCCCCceEEeccccceeccCc
Q psy2143          51 RTFRKFTFRGVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKKLRKAKKEAPPNEKPEVVKTHLRNMIIVPEM  130 (149)
Q Consensus        51 rtfkkFtYRG~~leeL~~Ms~eel~~LlpaR~RRsl~RGl~~k~~~LLkKlrkakk~~~~geKp~~IKThsR~siIlPem  130 (149)
                      ++|++|+|||+++|||++||+|||++|+||||||++|||++.++.+||+||+++++.+   ++|++||||+|+|+|+|+|
T Consensus         2 ~~~~~f~yrG~~l~~L~~m~~~~~~~l~~ar~RRsl~KGp~~~~~~LlkKi~k~~~~~---~k~~~ikT~sR~s~IlP~~   78 (134)
T PRK04038          2 KRWKEFTYRGYTLEELQEMSLEEFAELLPARQRRSLKRGLTPEQRKLLEKIRKARREK---KKGRVIRTHVRDMIILPEM   78 (134)
T ss_pred             CccceeeecccCHHHHHcCCHHHHHHHcchhhhhhhccCCCcchHHHHHHHHHHHhcc---cCCcceeEeccCCeeChhh
Confidence            6899999999999999999999999999999999999999998999999999987743   3557899999999999999


Q ss_pred             ccceEEEeeCCceeeEeeC
Q psy2143         131 VGSVVGVYNGKTFNQVEIK  149 (149)
Q Consensus       131 VG~tv~VyNGK~Fv~V~Ik  149 (149)
                      ||++|+|||||+|++|+|+
T Consensus        79 VG~ti~VyNGk~fv~v~I~   97 (134)
T PRK04038         79 VGLTIAVYNGKEFVEVEIV   97 (134)
T ss_pred             cCeEEEEecCceeEeEEec
Confidence            9999999999999999996

>COG0185 RpsS Ribosomal protein S19 [Translation, ribosomal structure and biogenesis]

Probab=99.92  E-value=1.6e-25  Score=165.17  Aligned_cols=63  Identities=43%  Similarity=0.585  Sum_probs=57.6

Q ss_pred             hhhhhcCCCCcchhHHHHHHHHHhhcCCCCCCCceEEeccccceeccCcccceEEEeeCCceeeEeeC
Q psy2143          82 ARRRFARGIKRKPMALVKKLRKAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK  149 (149)
Q Consensus        82 ~RRsl~RGl~~k~~~LLkKlrkakk~~~~geKp~~IKThsR~siIlPemVG~tv~VyNGK~Fv~V~Ik  149 (149)
                      +||||+|||+ .+.+||+|++++++.   ++ .++||||||+|+|||+|||+||+|||||+|+||+|+
T Consensus         1 ~~RSlkkGp~-~~~~Ll~Kv~~~~~~---~~-k~~IkT~sR~stIlPemVG~ti~VhNGk~~vpV~I~   63 (93)
T COG0185           1 MRRSLKKGPF-VDKHLLKKVRKAKES---GK-KKPIKTWSRRSTILPEMVGLTIAVHNGKKFVPVEIT   63 (93)
T ss_pred             CCcccccCcc-ccHHHHHHHHHHHhc---cC-CCcceeeecccEechhhcCcEEEEEcCceEEEEEec
Confidence            5899999999 779999999999874   22 378999999999999999999999999999999995

>CHL00050 rps19 ribosomal protein S19

Probab=99.84  E-value=1.3e-21  Score=143.61  Aligned_cols=61  Identities=30%  Similarity=0.437  Sum_probs=54.8

Q ss_pred             hhhcCCCCcchhHHHHHHHHHhhcCCCCCCCceEEeccccceeccCcccceEEEeeCCceeeEeeC
Q psy2143          84 RRFARGIKRKPMALVKKLRKAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK  149 (149)
Q Consensus        84 Rsl~RGl~~k~~~LLkKlrkakk~~~~geKp~~IKThsR~siIlPemVG~tv~VyNGK~Fv~V~Ik  149 (149)
                      ||+|+|++.+ .+||+++++++..    +++++|+||+|+|+|||+|||++|+|||||+|++|+|+
T Consensus         3 RS~wKgpfv~-~~Ll~ki~~~~~~----~~~~~ikT~sR~s~IlP~~vg~t~~VyNGk~fv~v~I~   63 (92)
T CHL00050          3 RSLKKNPFVA-NHLLKKIEKLNTK----EEKEIIVTWSRASTIIPTMIGHTIAVHNGKEHIPIYIT   63 (92)
T ss_pred             CccccCcccC-HHHHHHHHHhhhc----cCCccceEEccccEeChhhcCcEEEEEcCceEEEEEEc
Confidence            8999999988 8999999987542    23567999999999999999999999999999999995

>PRK00357 rpsS 30S ribosomal protein S19; Reviewed

Probab=99.84  E-value=2.1e-21  Score=142.73  Aligned_cols=62  Identities=32%  Similarity=0.458  Sum_probs=55.6

Q ss_pred             hhhhcCCCCcchhHHHHHHHHHhhcCCCCCCCceEEeccccceeccCcccceEEEeeCCceeeEeeC
Q psy2143          83 RRRFARGIKRKPMALVKKLRKAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK  149 (149)
Q Consensus        83 RRsl~RGl~~k~~~LLkKlrkakk~~~~geKp~~IKThsR~siIlPemVG~tv~VyNGK~Fv~V~Ik  149 (149)
                      -||+|||++.+ .+||+++++++..   + ++++|+||+|+|+|+|+|||++|+||||++|++|+|+
T Consensus         2 ~RS~~Kgp~v~-~~Ll~ki~k~~~~---~-~~~~ikT~sR~s~IlP~~vg~~i~VyNGk~fv~v~I~   63 (92)
T PRK00357          2 ARSLKKGPFVD-GHLLKKVEKANES---G-DKKVIKTWSRRSTILPEFVGLTIAVHNGRKHVPVYVT   63 (92)
T ss_pred             CcccccCcccc-HHHHHHHHHHhhc---c-CCCceEEeeccCCcCHHHCCceEEEEcCCeeEeEEec
Confidence            38999999988 8999999988653   2 3567999999999999999999999999999999985

>TIGR01050 rpsS_bact ribosomal protein S19, bacterial/organelle

Probab=99.84  E-value=3.1e-21  Score=141.73  Aligned_cols=61  Identities=38%  Similarity=0.543  Sum_probs=55.2

Q ss_pred             hhhcCCCCcchhHHHHHHHHHhhcCCCCCCCceEEeccccceeccCcccceEEEeeCCceeeEeeC
Q psy2143          84 RRFARGIKRKPMALVKKLRKAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK  149 (149)
Q Consensus        84 Rsl~RGl~~k~~~LLkKlrkakk~~~~geKp~~IKThsR~siIlPemVG~tv~VyNGK~Fv~V~Ik  149 (149)
                      ||+|||++.+ .+||+++++++..    .++++|+||+|+|+|||+|||++|+||||++|++|+|+
T Consensus         3 RS~wKgpfv~-~~Ll~ki~k~~~~----~~~~~ikT~sR~s~IlP~~vg~~i~VynGk~fv~v~I~   63 (92)
T TIGR01050         3 RSLKKGPFVD-HHLLKKVEKLNES----GKKKVIKTWSRRSTIIPEMIGHTIAVHNGKKFIPVYIT   63 (92)
T ss_pred             cccccCcccc-HHHHHHHHHhhcc----cCCCceEEEecccEEChHHCCcEEEEEcCceEEEEEeC
Confidence            8999999988 8999999987632    24577999999999999999999999999999999985

the Archaea may be designated S15 or S19.

>PLN03147 ribosomal protein S19; Provisional

Probab=99.78  E-value=1.5e-19  Score=133.33  Aligned_cols=58  Identities=24%  Similarity=0.300  Sum_probs=50.4

Q ss_pred             hhhcCCCCcchhHHHHHHHHHhhcCCCCCCCceEEeccccceeccCcccceEEEeeCCceeeEeeC
Q psy2143          84 RRFARGIKRKPMALVKKLRKAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK  149 (149)
Q Consensus        84 Rsl~RGl~~k~~~LLkKlrkakk~~~~geKp~~IKThsR~siIlPemVG~tv~VyNGK~Fv~V~Ik  149 (149)
                      ||+|+|++.+ .+|+ ++.+++..      ..+|+||||+|+|||+|||++|+|||||+|++|+|+
T Consensus         1 RS~wKGPfv~-~~L~-k~~~~~~~------~~~iktwSR~S~IlP~~vg~ti~VyNGk~fv~v~It   58 (92)
T PLN03147          1 QAIWKGAFVD-AFLA-RIKKKRDL------LLGKKIWSHRSSILPDFVDCSVLIYNGKTHIRCKIT   58 (92)
T ss_pred             CCCccCcccc-HHHH-HHHHHHhc------CCceeEEcccceECHHHcCCEEEEeCCCceEEEEec
Confidence            8999999988 6675 57776542      247999999999999999999999999999999985

>PF00203 Ribosomal_S19: Ribosomal protein S19; InterPro: IPR002222 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.78  E-value=2.3e-19  Score=128.42  Aligned_cols=61  Identities=41%  Similarity=0.667  Sum_probs=52.1

Q ss_pred             hhhcCCCCcchhHHHHHHHHHhhcCCCCCCCceEEeccccceeccCcccceEEEeeCCceeeEeeC
Q psy2143          84 RRFARGIKRKPMALVKKLRKAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK  149 (149)
Q Consensus        84 Rsl~RGl~~k~~~LLkKlrkakk~~~~geKp~~IKThsR~siIlPemVG~tv~VyNGK~Fv~V~Ik  149 (149)
                      |++|+|++.. .++|+++++...   .++ +++|+||+|+|+|+|+|||++|+|||||+|++|+|+
T Consensus         1 Rs~~K~~~~~-~~~l~k~~~~~~---~~~-k~~ikt~~R~s~IlP~~vg~~i~VyNGk~f~~i~I~   61 (81)
T PF00203_consen    1 RSLWKGPFVL-KKLLKKIKKLNP---SKK-KKVIKTHSRSSTILPEMVGKTIGVYNGKKFVPIKIT   61 (81)
T ss_dssp             CCSSSSTHHH-HHHHHHHHHHHC---TTS-TSEEEESSTTSBBSGTGTTSEEEEESSSSEEEEECS
T ss_pred             CCCCcccchh-HHHHHHHHHHhh---cCC-CcceEEEeCCCCcccceeceEEEEecCceEEEEEec
Confidence            7899999966 777788776543   233 488999999999999999999999999999999985

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The small subunit ribosomal proteins can be categorised as: primary binding proteins, which bind directly and independently to 16S rRNA; secondary binding proteins, which display no specific affinity for 16S rRNA, but its assembly is contingent upon the presence of one or more primary binding proteins; and tertiary binding proteins, which require the presence of one or more secondary binding proteins and sometimes other tertiary binding proteins. The small ribosomal subunit protein S19 contains 88-144 amino acid residues. In Escherichia coli, S19 is known to form a complex with S13 that binds strongly to 16S ribosomal RNA. Experimental evidence [] has revealed that S19 is moderately exposed on the ribosomal surface, and is designated a secondary rRNA binding protein. S19 belongs to a family of ribosomal proteins [, ] that includes: eubacterial S19; algal and plant chloroplast S19; cyanelle S19; archaebacterial S19; plant mitochondrial S19; and eukaryotic S15 ('rig' protein).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 2XZM_S 2XZN_S 2ZKQ_s 3U5C_P 3O30_I 3U5G_P 3O2Z_I 3IZB_R 1S1H_S 1XMO_S ....

>KOG0899|consensus

Probab=99.67  E-value=4.9e-17  Score=119.52  Aligned_cols=60  Identities=32%  Similarity=0.388  Sum_probs=52.5

Q ss_pred             hhhhhcCCCCcchhHHHHHHHHHhhcCCCCCCCceEEeccccceeccCcccceEEEeeCCceeeEeeC
Q psy2143          82 ARRRFARGIKRKPMALVKKLRKAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK  149 (149)
Q Consensus        82 ~RRsl~RGl~~k~~~LLkKlrkakk~~~~geKp~~IKThsR~siIlPemVG~tv~VyNGK~Fv~V~Ik  149 (149)
                      .-||+|+|++.. ..|+++..+++.       ..+|+||+|.++|||+|||++|.|||||+|++|+|.
T Consensus        10 m~RSvwK~P~V~-~~~~rk~~~~~~-------~~pikt~sRasTIlP~~Vg~~~~IhNGk~~v~vkIt   69 (93)
T KOG0899|consen   10 MTRSVWKGPFVV-KFLLRKIEKLKG-------KAPIKTWSRASTILPTMVGHTFAIHNGKEHVPVKIT   69 (93)
T ss_pred             HHHHhhcCcchh-HHHHHHHHHhcC-------CCceeehhhhcchhhhhhCceEEEecCcceeeEEee
Confidence            458999999987 888888776643       235999999999999999999999999999999984

>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell

Probab=84.85  E-value=0.73  Score=33.04  Aligned_cols=35  Identities=23%  Similarity=0.476  Sum_probs=26.4

Q ss_pred             CCchHhhCCChHHHHHHhhhhhhhhhcCCCCcchhHHHHHHHHH
Q psy2143          61 VDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKKLRKA  104 (149)
Q Consensus        61 ~~leeL~~Ms~eel~~LlpaR~RRsl~RGl~~k~~~LLkKlrka  104 (149)
                      ++-|+|..||.+||-.++         +|++.++...|+.+|.-
T Consensus         1 ~s~eeL~~m~v~efn~~L---------~~lt~~q~~~lK~~RRr   35 (92)
T PF03131_consen    1 FSDEELVSMSVREFNRLL---------RGLTEEQIAELKQRRRR   35 (92)
T ss_dssp             --HHHHHHS-HHHHHHHC---------TTS-HHHHHHHHHHHHH
T ss_pred             CCHHHHhhCCHHHHHHHH---------HcCCHHHHHHHHHHHHH
Confidence            367899999999997777         78888888888888753

MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	149
3iz6_R	154	Localization Of The Small Subunit Ribosomal Protein		4e-24
2zkq_s	145	Structure Of A Mammalian Ribosomal 40s Subunit With		5e-19
3izb_R	142	Localization Of The Small Subunit Ribosomal Protein		9e-19
1s1h_S	80	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		3e-13
3jyv_S	71	Structure Of The 40s Rrna And Proteins And PE TRNA		3e-13
3zey_I	152	High-resolution Cryo-electron Microscopy Structure		5e-13
2xzm_S	144	Crystal Structure Of The Eukaryotic 40s Ribosomal S		2e-08
3j0l_S	125	Core Of Mammalian 80s Pre-Ribosome In Complex With		2e-08
3j20_T	132	Promiscuous Behavior Of Proteins In Archaeal Riboso		1e-07

>pdb|3IZ6|R Chain R, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 154

Iteration: 1
 Score =  106 bits (265), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 60/90 (66%)
Query: 60  GVDLDQLLDMPTEQLMELMHCXXXXXXXXGIKRKPMALVKKLRXXXXXXXXXXXXXXXXT 119
           GVDLD LLDM T+ L++L           G+KRKPMAL+KKLR                T
Sbjct: 28  GVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKDAPAGEKPEPVRT 87
Query: 120 HLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149
           HLRNMIIVPEM+GS+VGVYNGKTFNQVEIK
Sbjct: 88  HLRNMIIVPEMIGSIVGVYNGKTFNQVEIK 117

>pdb|2ZKQ|SS Chain s, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 145

Iteration: 1
 Score = 89.7 bits (221), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 59/90 (65%)
Query: 60  GVDLDQLLDMPTEQLMELMHCXXXXXXXXGIKRKPMALVKKLRXXXXXXXXXXXXXXXXT 119
           GVDLDQLLDM  EQLM+L           G++RK  +L+K+LR                T
Sbjct: 19  GVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKT 78
Query: 120 HLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149
           HLR+MII+PEMVGS+VGVYNGKTFNQVEIK
Sbjct: 79  HLRDMIILPEMVGSMVGVYNGKTFNQVEIK 108

>pdb|3IZB|R Chain R, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 142

Iteration: 1
 Score = 89.0 bits (219), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 54/90 (60%)
Query: 60  GVDLDQLLDMPTEQLMELMHCXXXXXXXXGIKRKPMALVKKLRXXXXXXXXXXXXXXXXT 119
           GVDL++LL+M TE  ++L           G+  KP   +KKLR                T
Sbjct: 19  GVDLEKLLEMSTEDFVKLAPARVRRRFARGMTSKPAGFMKKLRAAKLAAPENEKPAPVRT 78
Query: 120 HLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149
           H+RNMIIVPEM+GSVVG+YNGK FNQVEI+
Sbjct: 79  HMRNMIIVPEMIGSVVGIYNGKAFNQVEIR 108

>pdb|1S1H|S Chain S, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is In File 1s1i Length = 80

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 39/61 (63%)
Query: 89  GIKRKPMALVKKLRXXXXXXXXXXXXXXXXTHLRNMIIVPEMVGSVVGVYNGKTFNQVEI 148
           G+  KP   +KKLR                TH+RNMIIVPEM+GSVVG+YNGK FNQVEI
Sbjct: 2   GMTSKPAGFMKKLRAAKLAAPENEKPAPVRTHMRNMIIVPEMIGSVVGIYNGKAFNQVEI 61
Query: 149 K 149
           +
Sbjct: 62  R 62

>pdb|3JYV|S Chain S, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 71

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 39/61 (63%)
Query: 89  GIKRKPMALVKKLRXXXXXXXXXXXXXXXXTHLRNMIIVPEMVGSVVGVYNGKTFNQVEI 148
           G+  KP   +KKLR                TH+RNMIIVPEM+GSVVG+YNGK FNQVEI
Sbjct: 2   GMTSKPAGFMKKLRAAKLAAPENEKPAPVRTHMRNMIIVPEMIGSVVGIYNGKAFNQVEI 61
Query: 149 K 149
           +
Sbjct: 62  R 62

>pdb|3ZEY|I Chain I, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 152

Iteration: 1
 Score = 69.7 bits (169), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 48/90 (53%)
Query: 60  GVDLDQLLDMPTEQLMELMHCXXXXXXXXGIKRKPMALVKKLRXXXXXXXXXXXXXXXXT 119
           G ++D LL +  E+   L+H            R+   L+K+LR                T
Sbjct: 26  GHEIDPLLALTEEEFKALVHARARRRMNRHADRRAPVLLKRLREAKKNVKAGEKPKAVKT 85
Query: 120 HLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149
           HLR+++I PEMVGSVVG+YNG+ FN VEIK
Sbjct: 86  HLRDVVITPEMVGSVVGIYNGRQFNAVEIK 115

>pdb|2XZM|S Chain S, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 144

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 60  GVDLDQLLDMPTEQLMELMHCXXXXXXXXGIKRKPMALVKKLRXXXXXXXXXXXXXXXXT 119
           G + ++L+   +++L  L           GI  K    V K+R                T
Sbjct: 27  GSNSEKLI---SDELAALFDAKTRRRVKRGISEKYAKFVNKVRRSKEKCPAGEKPVPVKT 83
Query: 120 HLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149
           H R+MI++PE+VG +VGVYNGK F  VE+K
Sbjct: 84  HYRSMIVIPELVGGIVGVYNGKEFVNVEVK 113

>pdb|3J0L|S Chain S, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas Fitted To A 9.8a Cryo-Em Map: Classic Pre State 1 Length = 125

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 60  GVDLDQLLDMPTEQLMELMHCXXXXXXXXGIKRKPMALVKKLRXXXXXXXXXXXXXXXXT 119
           G + ++L+   +++L  L           GI  K    V K+R                T
Sbjct: 17  GSNSEKLI---SDELAALFDAKTRRRVKRGISEKYAKFVNKVRRSKEKCPAGEKPVPVKT 73
Query: 120 HLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149
           H R+MI++PE+VG +VGVYNGK F  VE+K
Sbjct: 74  HYRSMIVIPELVGGIVGVYNGKEFVNVEVK 103

>pdb|3J20|T Chain T, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 132

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 60  GVDLDQLLDMPTEQLMELMHCXXXXXXXXGIKRKPMALVKKLRXXXXXXXXXXXXXXXXT 119
           G  L+QL++M  E+L  L           G+  +   L++K+R                T
Sbjct: 10  GYTLEQLMNMSLEELARLFPARQRRSLKRGLTPEQKKLLRKIRLAKKGKYKKPIR----T 65
Query: 120 HLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149
           H R+MII+PEMVG  + V+NGK F  VEIK
Sbjct: 66  HCRDMIILPEMVGLTIYVHNGKEFVPVEIK 95

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	149
3iz6_R	154	40S ribosomal protein S15 (S19P); eukaryotic ribos	4e-54
3u5c_P	142	40S ribosomal protein S15; translation, ribosome,	1e-53
2xzm_S	144	RPS15E; ribosome, translation; 3.93A {Tetrahymena	6e-48
3bbn_S	92	Ribosomal protein S19; small ribosomal subunit, sp	1e-06
3i1m_S	92	30S ribosomal protein S19; ribosome structure, pro	1e-06
3a1p_B	93	30S ribosomal protein S19; RIMM N-terminal domain,	1e-06
3r8n_S	79	30S ribosomal protein S19; protein biosynthesis, R	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>3iz6_R 40S ribosomal protein S15 (S19P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_s 1s1h_S 3jyv_S* Length = 154

 Score =  166 bits (423), Expect = 4e-54
 Identities = 80/111 (72%), Positives = 92/111 (82%)

Query: 39  NFSTVEETQKKKRTFRKFTFRGVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALV 98
                   Q KKRTFRK+++RGVDLD LLDM T+ L++L   RARRRF RG+KRKPMAL+
Sbjct: 7   ETEVAAGAQPKKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALI 66

Query: 99  KKLRKAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149
           KKLRKAKK+AP  EKPE V+THLRNMIIVPEM+GS+VGVYNGKTFNQVEIK
Sbjct: 67  KKLRKAKKDAPAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIK 117

>3u5c_P 40S ribosomal protein S15; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_R 3o30_I 3o2z_I 3u5g_P 1s1h_S 3jyv_S* Length = 142

 Score =  165 bits (419), Expect = 1e-53
 Identities = 64/106 (60%), Positives = 80/106 (75%)

Query: 44  EETQKKKRTFRKFTFRGVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKKLRK 103
           +    KKR F+  ++RGVDL++LL+M TE  ++L   R RRRFARG+  KP   +KKLR 
Sbjct: 3   QAVNAKKRVFKTHSYRGVDLEKLLEMSTEDFVKLAPARVRRRFARGMTSKPAGFMKKLRA 62

Query: 104 AKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149
           AK  AP NEKP  V+TH+RNMIIVPEM+GSVVG+YNGK FNQVEI+
Sbjct: 63  AKLAAPENEKPAPVRTHMRNMIIVPEMIGSVVGIYNGKAFNQVEIR 108

>2xzm_S RPS15E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_S 3j0o_S 3j0l_S 3j0p_S 3j0q_S Length = 144

 Score =  150 bits (381), Expect = 6e-48
 Identities = 48/112 (42%), Positives = 69/112 (61%), Gaps = 9/112 (8%)

Query: 47  QKKKRTFRKFTFRGVDLDQLLDMP---------TEQLMELMHCRARRRFARGIKRKPMAL 97
              K++ +KFTFRG  L++L  +          +++L  L   + RRR  RGI  K    
Sbjct: 2   ADNKKSIKKFTFRGKGLEELTALASGSNSEKLISDELAALFDAKTRRRVKRGISEKYAKF 61

Query: 98  VKKLRKAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK 149
           V K+R++K++ P  EKP  VKTH R+MI++PE+VG +VGVYNGK F  VE+K
Sbjct: 62  VNKVRRSKEKCPAGEKPVPVKTHYRSMIVIPELVGGIVGVYNGKEFVNVEVK 113

>3bbn_S Ribosomal protein S19; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 92

 Score = 43.3 bits (103), Expect = 1e-06
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 87  ARGIKRKPMALVKKLRKAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTF 143
            R +K+ P      LRK +K     EK E++ T  R   I+P M+G  + ++NG+  
Sbjct: 2   TRSLKKNPFVANHLLRKIEKLNKKAEK-EIIVTWSRASTIIPTMIGHTIAIHNGREH 57

>3i1m_S 30S ribosomal protein S19; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_S* 3e1a_L 3e1c_L 1vs5_S 3i1o_S 3i1q_S 3i1s_S 3i1z_S 3i21_S 3izv_W* 3izw_W* 3kc4_S 3or9_S 3ora_S 3sfs_S* 3uoq_S* 2qal_S* 1p6g_S 1p87_S 2aw7_S ... Length = 92

 Score = 43.3 bits (103), Expect = 1e-06
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 87  ARGIKRKPMALVKKLRKAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTF 143
            R +K+ P   +  L+K +K     +K + ++T  R   I P M+G  + V+NG+  
Sbjct: 2   PRSLKKGPFIDLHLLKKVEKAVESGDK-KPLRTWSRRSTIFPNMIGLTIAVHNGRQH 57

>3a1p_B 30S ribosomal protein S19; RIMM N-terminal domain, PRC-barrel domain, beta barrels, ribosome, 30S ribosomal subunit, ribosome biogenesis; 2.30A {Thermus thermophilus} PDB: 1fka_S 1gix_V* 1hnw_S* 1hnx_S* 1hnz_S* 1hr0_S 1ibk_S* 1ibl_S* 1ibm_S 1jgo_V* 1jgp_V* 1jgq_V* 1ml5_V* 1xmo_S* 1xmq_S* 1xnq_S* 1xnr_S* 1yl4_V 2b64_S* 2b9m_S* ... Length = 93

 Score = 42.9 bits (102), Expect = 1e-06
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 87  ARGIKRKPMALVKKLRKAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTF 143
            R +K+        L K  +     EK  ++KT  R   IVPEMVG  + VYNGK  
Sbjct: 2   PRSLKKGVFVDDHLLEKVLELNAKGEK-RLIKTWSRRSTIVPEMVGHTIAVYNGKQH 57

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.1 bits (90), Expect = 3e-04
 Identities = 23/122 (18%), Positives = 39/122 (31%), Gaps = 32/122 (26%)

Query: 27  DIYNDRGEYRTRNFSTVEETQKKKRTFRKFTFRGVDLDQLLDMPTEQLMELMHCRAR--- 83
                + E   + F  VEE  +    F     +          P+      +  R R   
Sbjct: 69  WTLLSKQEEMVQKF--VEEVLRINYKFLMSPIKTEQRQ-----PSMMTRMYIEQRDRLYN 121

Query: 84  --RRFARG-IKRKPMALVKKLRKAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNG 140
             + FA+  + R       KLR+A  E  P +            +++  ++GS      G
Sbjct: 122 DNQVFAKYNVSRLQP--YLKLRQALLELRPAKN-----------VLIDGVLGS------G 162

Query: 141 KT 142
           KT
Sbjct: 163 KT 164

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	149
3u5c_P	142	40S ribosomal protein S15; translation, ribosome,	100.0
2xzm_S	144	RPS15E; ribosome, translation; 3.93A {Tetrahymena	100.0
3iz6_R	154	40S ribosomal protein S15 (S19P); eukaryotic ribos	100.0
3j20_T	132	30S ribosomal protein S19P; archaea, archaeal, KIN	100.0
3r8n_S	79	30S ribosomal protein S19; protein biosynthesis, R	99.9
3a1p_B	93	30S ribosomal protein S19; RIMM N-terminal domain,	99.89
3bbn_S	92	Ribosomal protein S19; small ribosomal subunit, sp	99.89
3i1m_S	92	30S ribosomal protein S19; ribosome structure, pro	99.89
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	84.65
1skn_P	92	DNA-binding domain of SKN-1; complex (transcriptio	81.17

>3u5c_P 40S ribosomal protein S15; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_R 3o30_I 3o2z_I 3u5g_P 1s1h_S 3jyv_S*

Probab=100.00  E-value=3.7e-49  Score=307.22  Aligned_cols=108  Identities=59%  Similarity=0.988  Sum_probs=99.6

Q ss_pred             chhHHhhcccceeeeEEecCCchHhhCCChHHHHHHhhhhhhhhhcCCCCcchhHHHHHHHHHhhcCCCCCCCceEEecc
Q psy2143          42 TVEETQKKKRTFRKFTFRGVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKKLRKAKKEAPPNEKPEVVKTHL  121 (149)
Q Consensus        42 ~~~~~~~kkrtfkkFtYRG~~leeL~~Ms~eel~~LlpaR~RRsl~RGl~~k~~~LLkKlrkakk~~~~geKp~~IKThs  121 (149)
                      |||++++|||+|++|+|||+|||||++||+|||++|+||||||+|+|||.++|.+||++||+|+++++++++|++|+||+
T Consensus         1 m~~~~~~kkrtf~kFtyrG~~ld~Ll~ms~e~l~~L~~aR~RR~l~RGl~~k~~~Ll~klrkak~~~~~~~k~~~ikT~s   80 (142)
T 3u5c_P            1 MSQAVNAKKRVFKTHSYRGVDLEKLLEMSTEDFVKLAPARVRRRFARGMTSKPAGFMKKLRAAKLAAPENEKPAPVRTHM   80 (142)
T ss_dssp             -------CCCCCCCCBSSSCBHHHHHTTCHHHHHHHSCHHHHHHHHSCCSSCSHHHHHHHHHHHHHSCSSSCCCCEEECC
T ss_pred             CcccccccccceeeEEEccccHHHHHcCCHHHHHHHhhHHHhhhhccCCCHHHHHHHHHHHHHhhhcCcccCCcceEeec
Confidence            57888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceeccCcccceEEEeeCCceeeEeeC
Q psy2143         122 RNMIIVPEMVGSVVGVYNGKTFNQVEIK  149 (149)
Q Consensus       122 R~siIlPemVG~tv~VyNGK~Fv~V~Ik  149 (149)
                      |+|+|+|+|||++|+|||||+|++|+|+
T Consensus        81 R~s~IlP~mVG~ti~VyNGK~f~~V~It  108 (142)
T 3u5c_P           81 RNMIIVPEMIGSVVGIYNGKAFNQVEIR  108 (142)
T ss_dssp             TTCBCCGGGTTCEEEEESSSSEEEEECC
T ss_pred             cCCEeChhHCCCEEEEEcCCeeEEEecc
Confidence            9999999999999999999999999996

>2xzm_S RPS15E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_S 3j0o_S 3j0l_S 3j0p_S 3j0q_S

Probab=100.00  E-value=2.1e-45  Score=286.61  Aligned_cols=101  Identities=48%  Similarity=0.861  Sum_probs=91.6

Q ss_pred             cccceeeeEEecCCchHhhC---------CChHHHHHHhhhhhhhhhcCCCCcchhHHHHHHHHHhhcCCCCCCCceEEe
Q psy2143          49 KKRTFRKFTFRGVDLDQLLD---------MPTEQLMELMHCRARRRFARGIKRKPMALVKKLRKAKKEAPPNEKPEVVKT  119 (149)
Q Consensus        49 kkrtfkkFtYRG~~leeL~~---------Ms~eel~~LlpaR~RRsl~RGl~~k~~~LLkKlrkakk~~~~geKp~~IKT  119 (149)
                      |||+|++|+|||+|||||++         |++|||++|+|||||||+||||+.++.+||+||++++++++.++||++|||
T Consensus         4 ~k~~~~kftyrG~~l~~L~~~~~~~~~~~m~~~~~~~l~~ar~RRSlkKGpfv~~~~LLkKi~k~~~~~~~~~k~~vIKT   83 (144)
T 2xzm_S            4 NKKSIKKFTFRGKGLEELTALASGSNSEKLISDELAALFDAKTRRRVKRGISEKYAKFVNKVRRSKEKCPAGEKPVPVKT   83 (144)
T ss_dssp             -------CCCCTTCHHHHHHHHSSTTCCSSSCHHHHHHSCHHHHHHHHHHCCSHHHHHHHHHHHHHHHSCTTTCCCCEEE
T ss_pred             cccceeeeeecCCcHHHHHhhhcccccccCCHHHHHHHhchhhhhhhhCCCCcccHHHHHHHHHHhhhhhccCCCceEEE
Confidence            56899999999999999999         999999999999999999999999899999999999998888888899999


Q ss_pred             ccccceeccCcccceEEEeeCCceeeEeeC
Q psy2143         120 HLRNMIIVPEMVGSVVGVYNGKTFNQVEIK  149 (149)
Q Consensus       120 hsR~siIlPemVG~tv~VyNGK~Fv~V~Ik  149 (149)
                      |+|+|+|+|+|||++|+|||||+|++|+|+
T Consensus        84 wsR~stIlPemVG~ti~VyNGK~fvpV~It  113 (144)
T 2xzm_S           84 HYRSMIVIPELVGGIVGVYNGKEFVNVEVK  113 (144)
T ss_dssp             CCTTCBCCGGGTTCEEEEECSSSEEEEECC
T ss_pred             eccCcCcCHhHCCcEEEEecCCeeeeeeec
Confidence            999999999999999999999999999996

>3iz6_R 40S ribosomal protein S15 (S19P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_s

Probab=100.00  E-value=5.3e-48  Score=303.98  Aligned_cols=111  Identities=73%  Similarity=1.137  Sum_probs=57.8

Q ss_pred             cccc--hhHHhhcccceeeeEEecCCchHhhCCChHHHHHHhhhhhhhhhcCCCCcchhHHHHHHHHHhhcCCCCCCCce
Q psy2143          39 NFST--VEETQKKKRTFRKFTFRGVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKKLRKAKKEAPPNEKPEV  116 (149)
Q Consensus        39 ~~~~--~~~~~~kkrtfkkFtYRG~~leeL~~Ms~eel~~LlpaR~RRsl~RGl~~k~~~LLkKlrkakk~~~~geKp~~  116 (149)
                      |+++  +.++++|||+|++|+|||+|||||++||+|||++||||||||+|+|||.++|.+||++||+++++++++++|++
T Consensus         5 ~~~~~~~~~~~~kkrtf~kFtYrG~~ld~Ll~ms~eel~~L~~aR~RR~l~RGl~~k~~~Llkklrkak~~~~~~~k~~~   84 (154)
T 3iz6_R            5 EVETEVAAGAQPKKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKDAPAGEKPEP   84 (154)
T ss_dssp             -----------------------------------------------------CCCCSCCCCSSCCSCCCSHHHHHTHHH
T ss_pred             cchhHHHHHhhhcccceeeEEEecCcHHHHHhCCHHHHHHHccHHHhhhhhcCCCHHHHHHHHHHHHhhhccCcccCCce
Confidence            4553  34567889999999999999999999999999999999999999999999999999999999998888888999


Q ss_pred             EEeccccceeccCcccceEEEeeCCceeeEeeC
Q psy2143         117 VKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK  149 (149)
Q Consensus       117 IKThsR~siIlPemVG~tv~VyNGK~Fv~V~Ik  149 (149)
                      |+||+|+|+|+|+|||++|+|||||+|++|+|+
T Consensus        85 IkT~sR~s~IlPemVG~ti~VyNGK~f~~V~It  117 (154)
T 3iz6_R           85 VRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIK  117 (154)
T ss_dssp             HHTCSCSCCCCCCCCCCCCGGGTTCCCEEESSS
T ss_pred             eeecccCCEECHHHCCcEEEEEcCcceeeEEec
Confidence            999999999999999999999999999999985

>3j20_T 30S ribosomal protein S19P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=1.5e-41  Score=261.85  Aligned_cols=92  Identities=45%  Similarity=0.728  Sum_probs=86.5

Q ss_pred             eeeEEecCCchHhhCCChHHHHHHhhhhhhhhhcCCCCcchhHHHHHHHHHhhcCCCCCCCceEEeccccceeccCcccc
Q psy2143          54 RKFTFRGVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKKLRKAKKEAPPNEKPEVVKTHLRNMIIVPEMVGS  133 (149)
Q Consensus        54 kkFtYRG~~leeL~~Ms~eel~~LlpaR~RRsl~RGl~~k~~~LLkKlrkakk~~~~geKp~~IKThsR~siIlPemVG~  133 (149)
                      ++|+|||+|||||++||+|||++|+|||||||++|||+..+.+||+||+++++++    +|++||||+|+|+|+|+|||+
T Consensus         4 ~kftyrG~~ld~L~~ms~~~l~~L~~ar~rRslkkG~~~~~~~LlkKi~k~~~~~----~~~~ikT~sR~s~IlP~mVG~   79 (132)
T 3j20_T            4 KEFRYRGYTLEQLMNMSLEELARLFPARQRRSLKRGLTPEQKKLLRKIRLAKKGK----YKKPIRTHCRDMIILPEMVGL   79 (132)
T ss_dssp             --CCSSSSCHHHHHHHHHHHHHHHSCHHHHHHHHHCCCHHHHHHHHHHHHHSSSS----CCCCEEECCCSCBCCGGGTTC
T ss_pred             cEEEEcCCcHHHHHcCCHHHHHHHhhHHHHHHhhcCCchhhHHHHHHHHHHHhcc----CCcceEecccCCEeChHHCCc
Confidence            6899999999999999999999999999999999999989999999999998764    578899999999999999999


Q ss_pred             eEEEeeCCceeeEeeC
Q psy2143         134 VVGVYNGKTFNQVEIK  149 (149)
Q Consensus       134 tv~VyNGK~Fv~V~Ik  149 (149)
                      +|+|||||+|++|+|+
T Consensus        80 ti~VyNGK~f~~V~It   95 (132)
T 3j20_T           80 TIYVHNGKEFVPVEIK   95 (132)
T ss_dssp             EEEEECSSSEEEEECC
T ss_pred             EEEEECCCeeeeeecc
Confidence            9999999999999996

>3a1p_B 30S ribosomal protein S19; RIMM N-terminal domain, PRC-barrel domain, beta barrels, ribosome, 30S ribosomal subunit, ribosome biogenesis; 2.30A {Thermus thermophilus} PDB: 1fka_S 1gix_V* 1hnw_S* 1hnx_S* 1hnz_S* 1hr0_S 1ibk_S* 1ibl_S* 1ibm_S 1jgo_V* 1jgp_V* 1jgq_V* 1ml5_V* 1xmo_S* 1xmq_S* 1xnq_S* 1xnr_S* 1yl4_V 2b64_S* 2b9m_S* ...

Probab=99.89  E-value=5e-24  Score=155.77  Aligned_cols=61  Identities=34%  Similarity=0.517  Sum_probs=50.3

Q ss_pred             hhhcCCCCcchhHHHHHHHHHhhcCCCCCCCceEEeccccceeccCcccceEEEeeCCceeeEeeC
Q psy2143          84 RRFARGIKRKPMALVKKLRKAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK  149 (149)
Q Consensus        84 Rsl~RGl~~k~~~LLkKlrkakk~~~~geKp~~IKThsR~siIlPemVG~tv~VyNGK~Fv~V~Ik  149 (149)
                      ||+|+|++. +.+||++|+++++.    +++++|+||||+|+|+|+|||++|+|||||+|++|+|+
T Consensus         3 RS~~Kgpfv-~~~Llkki~~~~~~----~~~~~ikT~sR~stIlP~mVG~ti~VhNGK~fv~V~It   63 (93)
T 3a1p_B            3 RSLKKGVFV-DDHLLEKVLELNAK----GEKRLIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYIT   63 (93)
T ss_dssp             ------CCC-CHHHHHHHHHHHHH----TCCCCEEECCSSSBCCGGGTTCEEEEECSSSEEEEECC
T ss_pred             CccccCccc-CHHHHHHHHHHHhc----CCCcceEEEecCcCcChhhcCcEEEEecCceEEEEEec
Confidence            799999998 59999999998874    24788999999999999999999999999999999985

>3bbn_S Ribosomal protein S19; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=99.89  E-value=4.8e-24  Score=155.52  Aligned_cols=61  Identities=25%  Similarity=0.430  Sum_probs=55.3

Q ss_pred             hhhcCCCCcchhHHHHHHHHHhhcCCCCCCCceEEeccccceeccCcccceEEEeeCCceeeEeeC
Q psy2143          84 RRFARGIKRKPMALVKKLRKAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK  149 (149)
Q Consensus        84 Rsl~RGl~~k~~~LLkKlrkakk~~~~geKp~~IKThsR~siIlPemVG~tv~VyNGK~Fv~V~Ik  149 (149)
                      ||+|+|++ .+.+||++++++++.   + ++++|+||||+|+|+|+|||++|+|||||+|++|+|+
T Consensus         3 RS~~Kgpf-v~~~Llkki~~~~~~---~-~~~~ikT~sR~stIlPemVG~ti~VhNGK~fv~V~It   63 (92)
T 3bbn_S            3 RSLKKNPF-VANHLLRKIEKLNKK---A-EKEIIVTWSRASTIIPTMIGHTIAIHNGREHLPIYIT   63 (92)
T ss_dssp             CSCSSCCC-CCHHHHHHHHTTTTT---T-CCCCEEECCCSCCCCTTCTTCCEEEECSSCEEEECCC
T ss_pred             CccccCcc-cCHHHHHHHHHHHhc---C-CCcceEEEecCcccChhhcCcEEEEecCceEEEEEEe
Confidence            79999999 559999999988763   3 3788999999999999999999999999999999985

>3i1m_S 30S ribosomal protein S19; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_S* 3e1a_L 3e1c_L 1vs5_S 3i1o_S 3i1q_S 3i1s_S 3i1z_S 3i21_S 3izv_W* 3izw_W* 3kc4_S 3or9_S 3ora_S 3sfs_S* 3uoq_S* 4gaq_S* 4gas_S* 2qal_S* 1p6g_S ...

Probab=99.89  E-value=6.2e-24  Score=155.00  Aligned_cols=62  Identities=27%  Similarity=0.420  Sum_probs=56.2

Q ss_pred             hhhhcCCCCcchhHHHHHHHHHhhcCCCCCCCceEEeccccceeccCcccceEEEeeCCceeeEeeC
Q psy2143          83 RRRFARGIKRKPMALVKKLRKAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK  149 (149)
Q Consensus        83 RRsl~RGl~~k~~~LLkKlrkakk~~~~geKp~~IKThsR~siIlPemVG~tv~VyNGK~Fv~V~Ik  149 (149)
                      -||+|+|++.+ .+||++++++++++    ++++|+||+|+|+|||+|||++|+|||||+|++|+|+
T Consensus         2 ~RS~~KGpfv~-~~Llkki~k~~~~~----~~~~ikT~sR~stIlP~mVG~ti~VyNGK~fv~V~It   63 (92)
T 3i1m_S            2 PRSLKKGPFID-LHLLKKVEKAVESG----DKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVT   63 (92)
T ss_dssp             -CCCCSSCCCC-HHHHHHHHHHHHTC----CCSCCEECCTTCBCCGGGSSCCCEEECSSSEEECCCC
T ss_pred             CcccccCcCcC-HHHHHHHHHHHhcC----CCcceEEecCCCEechHHCCCEEEEEcCceEEEEEee
Confidence            37999999976 99999999998752    4678999999999999999999999999999999985

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}

Probab=84.65  E-value=0.58  Score=34.53  Aligned_cols=36  Identities=19%  Similarity=0.460  Sum_probs=31.2

Q ss_pred             cCCchHhhCCChHHHHHHhhhhhhhhhcCCCCcchhHHHHHHHHH
Q psy2143          60 GVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKKLRKA  104 (149)
Q Consensus        60 G~~leeL~~Ms~eel~~LlpaR~RRsl~RGl~~k~~~LLkKlrka  104 (149)
                      +++.|+|..||.+||-.+|         +|++.++...|+.+|..
T Consensus         7 ~~sd~~Lv~m~v~elN~~L---------~~Ls~~e~~~lK~~RR~   42 (107)
T 3a5t_A            7 SLTDEELVTMSVRELNQHL---------RGLSKEEIIQLKQRRRT   42 (107)
T ss_dssp             CCCHHHHHHSCHHHHHHTT---------TTCCHHHHHHHHHHHHH
T ss_pred             CCCHHHHhcCCHHHHHHHH---------hCCCHHHHHHHHHHHHh
Confidence            5789999999999998876         58999999999998754

>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1

Probab=81.17  E-value=1.4  Score=32.11  Aligned_cols=38  Identities=18%  Similarity=0.353  Sum_probs=32.3

Q ss_pred             cCCchHhhCCChHHHHHHhhhhhhhhhcCCCCcchhHHHHHHHHH
Q psy2143          60 GVDLDQLLDMPTEQLMELMHCRARRRFARGIKRKPMALVKKLRKA  104 (149)
Q Consensus        60 G~~leeL~~Ms~eel~~LlpaR~RRsl~RGl~~k~~~LLkKlrka  104 (149)
                      +++.||+.+||.+||-+++.       ..||+..|..+++++|.-
T Consensus        30 Pfs~~eIv~lpv~efn~lLk-------~~~Ls~~Ql~~ir~~RRR   67 (92)
T 1skn_P           30 PVSAFQISEMSLSELQQVLK-------NESLSEYQRQLIRKIRRR   67 (92)
T ss_dssp             SSCHHHHHHSCHHHHHHHHH-------HSCCCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHCcHHHHHHHHH-------hCCCCHHHHHHHHHHHHH
Confidence            56899999999999987775       357999999999999854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	149
d2gy9s1	79	d.28.1.1 (S:2-80) Ribosomal protein S19 {Escherich	3e-16
d2uubs1	80	d.28.1.1 (S:2-81) Ribosomal protein S19 {Thermus t	9e-16

>d2gy9s1 d.28.1.1 (S:2-80) Ribosomal protein S19 {Escherichia coli [TaxId: 562]} Length = 79

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S19
superfamily: Ribosomal protein S19
family: Ribosomal protein S19
domain: Ribosomal protein S19
species: Escherichia coli [TaxId: 562]

 Score = 66.7 bits (163), Expect = 3e-16
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 88  RGIKRKPMALVKKLRKAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVE 147
           R +K+ P   +  L+K +K     +K   ++T  R   I P M+G  + V+NG+    V 
Sbjct: 1   RSLKKGPFIDLHLLKKVEKAVESGDKK-PLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVF 59

Query: 148 IK 149
           + 
Sbjct: 60  VT 61

>d2uubs1 d.28.1.1 (S:2-81) Ribosomal protein S19 {Thermus thermophilus [TaxId: 274]} Length = 80

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S19
superfamily: Ribosomal protein S19
family: Ribosomal protein S19
domain: Ribosomal protein S19
species: Thermus thermophilus [TaxId: 274]

 Score = 65.5 bits (160), Expect = 9e-16
 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 88  RGIKRKPMALVKKLRKAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVE 147
           R +K+        L K  +     EK  ++KT  R   IVPEMVG  + VYNGK    V 
Sbjct: 2   RSLKKGVFVDDHLLEKVLELNAKGEKR-LIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVY 60

Query: 148 IK 149
           I 
Sbjct: 61  IT 62

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	149
d2uubs1	80	Ribosomal protein S19 {Thermus thermophilus [TaxId	99.88
d2gy9s1	79	Ribosomal protein S19 {Escherichia coli [TaxId: 56	99.88
d1rg6a_	67	C-terminal domain of p63 {Human (Homo sapiens) [Ta	86.34
d1dxsa_	57	C-terminal domain of p73 {Human (Homo sapiens) [Ta	83.38

>d2uubs1 d.28.1.1 (S:2-81) Ribosomal protein S19 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S19
superfamily: Ribosomal protein S19
family: Ribosomal protein S19
domain: Ribosomal protein S19
species: Thermus thermophilus [TaxId: 274]

Probab=99.88  E-value=8.2e-24  Score=149.24  Aligned_cols=61  Identities=34%  Similarity=0.523  Sum_probs=55.1

Q ss_pred             hhhcCCCCcchhHHHHHHHHHhhcCCCCCCCceEEeccccceeccCcccceEEEeeCCceeeEeeC
Q psy2143          84 RRFARGIKRKPMALVKKLRKAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK  149 (149)
Q Consensus        84 Rsl~RGl~~k~~~LLkKlrkakk~~~~geKp~~IKThsR~siIlPemVG~tv~VyNGK~Fv~V~Ik  149 (149)
                      ||+|||++.+ .+||+|+.+++..    .++++||||+|+|+|+|+|||++|+|||||+|++|+|+
T Consensus         2 RS~~Kgpfv~-~~Llkki~~~~~~----~~k~~IkT~sR~s~IlP~~VG~~~~VyNGk~fv~v~It   62 (80)
T d2uubs1           2 RSLKKGVFVD-DHLLEKVLELNAK----GEKRLIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYIT   62 (80)
T ss_dssp             CCCCSSCCCC-HHHHHHHHTTTSS----CCCSEEEECCSSSBCCGGGTTCEEEEECSSCEEEEECC
T ss_pred             CCcccCcCcc-HHHHHHHHHHHhc----CCCCcEeEeccccEechHHcceEEEEEeCCeeEeEEec
Confidence            8999999977 7999999987654    24678999999999999999999999999999999985

>d2gy9s1 d.28.1.1 (S:2-80) Ribosomal protein S19 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S19
superfamily: Ribosomal protein S19
family: Ribosomal protein S19
domain: Ribosomal protein S19
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=1e-23  Score=148.47  Aligned_cols=61  Identities=28%  Similarity=0.432  Sum_probs=55.4

Q ss_pred             hhhcCCCCcchhHHHHHHHHHhhcCCCCCCCceEEeccccceeccCcccceEEEeeCCceeeEeeC
Q psy2143          84 RRFARGIKRKPMALVKKLRKAKKEAPPNEKPEVVKTHLRNMIIVPEMVGSVVGVYNGKTFNQVEIK  149 (149)
Q Consensus        84 Rsl~RGl~~k~~~LLkKlrkakk~~~~geKp~~IKThsR~siIlPemVG~tv~VyNGK~Fv~V~Ik  149 (149)
                      ||+||||+.+ .+||+|+.++....    ++++||||+|+|+|+|+|||++|+|||||.|++|+|+
T Consensus         1 RS~~KGpfv~-~~Llkki~k~~~~~----~~~~IkT~sR~s~IlP~~VG~~i~VyNGk~fv~v~It   61 (79)
T d2gy9s1           1 RSLKKGPFID-LHLLKKVEKAVESG----DKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVT   61 (79)
T ss_dssp             CCCTTCCCCC-TTTTSHHHHGGGGS----CCSCEEESCTTSBCCGGGTTCEEEEECSSSEEEEECC
T ss_pred             CCCccCcccc-HHHHHHHHHHHhcC----CCCcEEEEecccccChHHhCcEEEEEeCCeeEEEEec
Confidence            8999999977 78999999887653    3567999999999999999999999999999999985

>d1rg6a_ a.60.1.2 (A:) C-terminal domain of p63 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: C-terminal domain of p63
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.34  E-value=0.028  Score=37.27  Aligned_cols=36  Identities=25%  Similarity=0.389  Sum_probs=29.7

Q ss_pred             eEEecC-CchHhhCCChHHHHHH-hhhhhhhhhcCCCC
Q psy2143          56 FTFRGV-DLDQLLDMPTEQLMEL-MHCRARRRFARGIK   91 (149)
Q Consensus        56 FtYRG~-~leeL~~Ms~eel~~L-lpaR~RRsl~RGl~   91 (149)
                      |+=+|+ ++.+|.+.++|+|.++ .|.+.|-.+|||+-
T Consensus        22 F~~q~l~~v~qLe~~sleDL~~mkIp~~~r~~IWK~l~   59 (67)
T d1rg6a_          22 FTTQGLTTIYQIEHYSMDDLASLKIPEQFRHAIWKGIL   59 (67)
T ss_dssp             HHHHTCCSGGGGSSCCHHHHHTTTCCTHHHHHHHHHHH
T ss_pred             HHHccchhHHHHhhcCHHHHHcCcCcHHHHHHHHHHHH
Confidence            444554 7899999999999886 78899999999865

>d1dxsa_ a.60.1.2 (A:) C-terminal domain of p73 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: C-terminal domain of p73
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.38  E-value=0.059  Score=33.37  Aligned_cols=36  Identities=28%  Similarity=0.413  Sum_probs=28.3

Q ss_pred             eeEEecCC-chHhhCCChHHHHHH-hhhhhhhhhcCCC
Q psy2143          55 KFTFRGVD-LDQLLDMPTEQLMEL-MHCRARRRFARGI   90 (149)
Q Consensus        55 kFtYRG~~-leeL~~Ms~eel~~L-lpaR~RRsl~RGl   90 (149)
                      .|.=.|++ +|.+.+|+.++|.++ +|+..|++|++|+
T Consensus        17 ~F~~~G~~~l~~l~~lt~eDL~~lGI~~~hr~kilk~i   54 (57)
T d1dxsa_          17 YFTSQGLQSIYHLQNLTIEDLGALKIPEQYRMTIWRGL   54 (57)
T ss_dssp             HHHTTTCCCHHHHHTCCHHHHHHTTCCTTTHHHHHHHH
T ss_pred             HHHHccCCcHHHHHHhhHHHHHHcCCCHHHHHHHHHHH
Confidence            46667885 999999999999875 4777777777654