Psyllid ID: psy2215

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170--
Protein Sequence
MELSNIYYDRDSYVETVSSGQRCLLANTNRRVWVQSQPSGAVDFLSRGWWFESKSSHKILVYSGAVASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCPLHVHNHWV
Secondary Structure (PSIPRED)
cccccEEEccccEEEEEccccEEEccccccEEEEEcccccccccccccEEEcccccccEEEEEEEcccccEEEcccEEEEEEEEEEEcEEEEEccEEEEccccEEEEccEEEEEcccEEccccccccccEEEEccccEEEccccEEEEcccccEEEEEEEccccEEEccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEccccEEEEEccccEEEEEccccEEEEEcccccHHHHHccccEEEccccccEEEEEEEEEccccEEEEEEEEcccEEEEccEEEEEccEEEEEccEEEEEEEEEEEcccEEEcccccEccccEEEEcccEEEEcccEEEEEEEEccEEccEEEEccccEEccccc
Coil and Loop (DISEMBL)
melsniyydrdsyvetVSSGQRCLLANTNRrvwvqsqpsgavdflsrgwwfesksshKILVYSGAVASGNKVSRKSLVAGAQNIVLTGKVIIQCDAvlrgdlanirtgryciiskgvvirppfkkfakgflvypgstVYLVFTASVrlkspfaqiysyiiapcplhvhnhwv
Flexible Loop (DISEMBL)
melsniyydrdsyvetVSSGQRCLLANTNRRVWVQSQPSGAVDFLSRGWWFESKSSHKILVYSGAVASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGryciiskgvvirppFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCPLHVHNHWV
Low Complexity Region (SEG)
MELSNIYYDRDSYVETVSSGQRCLLANTNRRVWVQSQPSGAVDFLSRGWWFESKSSHKILVYSGAVASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCPLHVHNHWV
Disordered region (IsUnstruct)
*****IYYDRDSYVETVSSGQRCLLANTNRRVWVQSQPSGAVDFLSRGWWFESKSSHKILVYSGAVASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCPLHVHNHW*
Disordered Region (DISOPRED)
***SNIYYDRDSYVETVSSGQRCLLANTNRRVWVQSQPSGAVDFLSRGWWFESKSSHKIL****AVASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCPLHVHNHWV
Disordered Region (DISEMBL)
MELSNIYYDRDSYVETVSSGQRCLLANTNRRVWVQSQPSGAVDFLSRGWWFESKSSHKILVYSGAVASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCPLHVHNHWV
Disordered Region (DISPRO)
*ELSNIYYDRDSYVETVSSGQRCLLANTNRRVWVQSQPSGAVDFLSRGWWFESKSSHKILVYSGAVASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCPLHVHNHWV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MELSNIYYDRDSYVETVSSGQRCLLANTNRRVWVQSQPSGAVDFLSRGWWFESKSSHKILVYSGAVASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCPLHVHNHWV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	172	2.2.26 [Sep-21-2011]
Q9QZB9	182	Dynactin subunit 5 OS=Mus	yes	N/A	0.517	0.489	0.520	7e-20
Q9BTE1	182	Dynactin subunit 5 OS=Hom	yes	N/A	0.517	0.489	0.510	1e-19
Q5R559	182	Dynactin subunit 5 OS=Pon	yes	N/A	0.517	0.489	0.510	1e-19
Q54XU5	198	Dynactin subunit 5 OS=Dic	yes	N/A	0.377	0.328	0.545	9e-11

>sp|Q9QZB9|DCTN5_MOUSE Dynactin subunit 5 OS=Mus musculus GN=Dctn5 PE=1 SV=1

 Score = 96.7 bits (239), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 50/96 (52%), Positives = 65/96 (67%), Gaps = 7/96 (7%)

Query: 67  ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF 126
           ASGNKVSR+S++ G+QNIVL GK II  D ++RGDLAN+R GR+C++    VIRPPFKKF
Sbjct: 17  ASGNKVSRQSVLCGSQNIVLNGKTIIMNDCIIRGDLANVRVGRHCVVKSRSVIRPPFKKF 76

Query: 127 AKGFLVYP---GSTVYLVFTASVRLKSPFAQIYSYI 159
           +KG   +P   G  V++     V      AQI SY+
Sbjct: 77  SKGVAFFPLHIGDHVFIEEDCVVNA----AQIGSYV 108

Mus musculus (taxid: 10090)

>sp|Q9BTE1|DCTN5_HUMAN Dynactin subunit 5 OS=Homo sapiens GN=DCTN5 PE=1 SV=1

 Score = 95.9 bits (237), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 49/96 (51%), Positives = 65/96 (67%), Gaps = 7/96 (7%)

Query: 67  ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF 126
           ASGNKVSR+S++ G+QNIVL GK I+  D ++RGDLAN+R GR+C++    VIRPPFKKF
Sbjct: 17  ASGNKVSRQSVLCGSQNIVLNGKTIVMNDCIIRGDLANVRVGRHCVVKSRSVIRPPFKKF 76

Query: 127 AKGFLVYP---GSTVYLVFTASVRLKSPFAQIYSYI 159
           +KG   +P   G  V++     V      AQI SY+
Sbjct: 77  SKGVAFFPLHIGDHVFIEEDCVVNA----AQIGSYV 108

Homo sapiens (taxid: 9606)

>sp|Q5R559|DCTN5_PONAB Dynactin subunit 5 OS=Pongo abelii GN=DCTN5 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 49/96 (51%), Positives = 65/96 (67%), Gaps = 7/96 (7%)

Query: 67  ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF 126
           ASGNKVSR+S++ G+QNIVL GK I+  D ++RGDLAN+R GR+C++    VIRPPFKKF
Sbjct: 17  ASGNKVSRQSVLCGSQNIVLNGKTIVMNDCIIRGDLANVRVGRHCVVKSRSVIRPPFKKF 76

Query: 127 AKGFLVYP---GSTVYLVFTASVRLKSPFAQIYSYI 159
           +KG   +P   G  V++     V      AQI SY+
Sbjct: 77  SKGVAFFPLHIGDHVFIEEDCVVNA----AQIGSYV 108

Pongo abelii (taxid: 9601)

>sp|Q54XU5|DCTN5_DICDI Dynactin subunit 5 OS=Dictyostelium discoideum GN=dynE PE=3 SV=1

 Score = 66.2 bits (160), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 46/66 (69%), Gaps = 1/66 (1%)

Query: 68  SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFA 127
           +GNKVS+ S++ G  NI L GK II+   ++RGDLA++  GR  IIS+  VIRP  KKF 
Sbjct: 18  NGNKVSKSSILCGIMNIRLHGKTIIKPGVIVRGDLASVNIGRLSIISENTVIRPSSKKF- 76

Query: 128 KGFLVY 133
           KG LVY
Sbjct: 77  KGSLVY 82

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
114052957	181	dynactin 4 protein [Bombyx mori] gi|8724	0.395	0.375	0.705	4e-22
332375256	156	unknown [Dendroctonus ponderosae]	0.627	0.692	0.408	7e-22
383864532	181	PREDICTED: dynactin subunit 5-like [Mega	0.395	0.375	0.705	9e-22
380018695	125	PREDICTED: dynactin subunit 5-like [Apis	0.395	0.544	0.691	1e-21
357627838	182	dynactin 4 protein [Danaus plexippus]	0.395	0.373	0.691	1e-21
307212341	181	Dynactin subunit 5 [Harpegnathos saltato	0.459	0.436	0.645	2e-21
328791311	93	PREDICTED: dynactin subunit 5 isoform 1	0.383	0.709	0.696	2e-21
340720483	103	PREDICTED: dynactin subunit 5-like [Bomb	0.383	0.640	0.712	3e-21
322798207	181	hypothetical protein SINV_10679 [Solenop	0.395	0.375	0.705	3e-21
332030630	181	Dynactin subunit 5 [Acromyrmex echinatio	0.395	0.375	0.705	3e-21

>gi|114052957|ref|NP_001040117.1| dynactin 4 protein [Bombyx mori] gi|87248105|gb|ABD36105.1| dynactin 4 protein [Bombyx mori]

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 48/68 (70%), Positives = 61/68 (89%)

Query: 67  ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF 126
           ASGNKVSR++++ G+QNIVL GKVI+Q DA++RGDLAN++TGR+CIISKG VIRPPFKKF
Sbjct: 17  ASGNKVSRQTVLCGSQNIVLHGKVIVQSDAIIRGDLANVKTGRFCIISKGSVIRPPFKKF 76

Query: 127 AKGFLVYP 134
           +KG   +P
Sbjct: 77  SKGVAFFP 84

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332375256|gb|AEE62769.1| unknown [Dendroctonus ponderosae]

 Score =  108 bits (270), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 65/159 (40%), Positives = 83/159 (52%), Gaps = 51/159 (32%)

Query: 1   MELSNIYYDRDSYVETVSSGQRCLLANTNRRVWVQSQPSGAVDFLSRGWWFESKSSHKIL 60
           MEL NIYY++  YVET                                            
Sbjct: 1   MELENIYYNKHEYVET-------------------------------------------- 16

Query: 61  VYSGAVASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIR 120
                 ASGNKV R++++ G+QNI+L GKVIIQ DA++RGDLAN++TGRYCIISK  V+R
Sbjct: 17  ------ASGNKVCRQTVLCGSQNIILQGKVIIQADAIIRGDLANVKTGRYCIISKEAVLR 70

Query: 121 PPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYI 159
           PP+KKF+KG   +P S    VF     L +  AQI SY+
Sbjct: 71  PPYKKFSKGVAFFPLSIGDNVFIGEKTLINA-AQIGSYV 108

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864532|ref|XP_003707732.1| PREDICTED: dynactin subunit 5-like [Megachile rotundata]

 Score =  108 bits (269), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 48/68 (70%), Positives = 60/68 (88%)

Query: 67  ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF 126
           ASGNKVSR++++ G+QNIVL GKVI+Q DA++RGDLAN+RTGRYCIISK  +IRPPFKKF
Sbjct: 17  ASGNKVSRQTVLCGSQNIVLHGKVIVQSDAIIRGDLANVRTGRYCIISKNAIIRPPFKKF 76

Query: 127 AKGFLVYP 134
           +KG   +P
Sbjct: 77  SKGVAFFP 84

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380018695|ref|XP_003693260.1| PREDICTED: dynactin subunit 5-like [Apis florea]

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 47/68 (69%), Positives = 60/68 (88%)

Query: 67  ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF 126
           ASGNKVSR++++ G+QNIVL GKVI+Q DA++RGDLAN+RTGRYCIISK  +IRPPFKKF
Sbjct: 17  ASGNKVSRQTVLCGSQNIVLHGKVIVQSDAIIRGDLANVRTGRYCIISKNAIIRPPFKKF 76

Query: 127 AKGFLVYP 134
           ++G   +P
Sbjct: 77  SRGVAFFP 84

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357627838|gb|EHJ77387.1| dynactin 4 protein [Danaus plexippus]

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 47/68 (69%), Positives = 61/68 (89%)

Query: 67  ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF 126
           ASGNKVSR++++ G+QNIVL GKVI+Q +A++RGDLAN++TGR+CIISKG VIRPPFKKF
Sbjct: 17  ASGNKVSRQTVLCGSQNIVLHGKVIVQSEAIIRGDLANVKTGRFCIISKGSVIRPPFKKF 76

Query: 127 AKGFLVYP 134
           +KG   +P
Sbjct: 77  SKGVAFFP 84

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307212341|gb|EFN88145.1| Dynactin subunit 5 [Harpegnathos saltator]

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/79 (64%), Positives = 62/79 (78%)

Query: 67  ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF 126
           ASGNKVSR +++ G+QNIVL GKVI+Q DA++RGDLAN+RTGRYCIISK  VIRPPFKKF
Sbjct: 17  ASGNKVSRLTVLCGSQNIVLHGKVIVQSDAIIRGDLANVRTGRYCIISKNAVIRPPFKKF 76

Query: 127 AKGFLVYPGSTVYLVFTAS 145
           ++G   +P S    VF   
Sbjct: 77  SRGVAFFPLSMGNHVFVGE 95

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328791311|ref|XP_391876.2| PREDICTED: dynactin subunit 5 isoform 1 [Apis mellifera]

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/66 (69%), Positives = 60/66 (90%)

Query: 67  ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF 126
           ASGNKVSR++++ G+QNIVL GKVI+Q DA++RGDLAN+RTGRYCIISK  +IRPPFKKF
Sbjct: 17  ASGNKVSRQTVLCGSQNIVLHGKVIVQSDAIIRGDLANVRTGRYCIISKNAIIRPPFKKF 76

Query: 127 AKGFLV 132
           ++G ++
Sbjct: 77  SRGLVI 82

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720483|ref|XP_003398666.1| PREDICTED: dynactin subunit 5-like [Bombus terrestris]

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/66 (71%), Positives = 59/66 (89%)

Query: 67  ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF 126
           ASGNKVSR +++ G+QNIVL GKVI+Q DA++RGDLAN+RTGRYCIISK  +IRPPFKKF
Sbjct: 17  ASGNKVSRHTVLCGSQNIVLHGKVIVQSDAIIRGDLANVRTGRYCIISKNAIIRPPFKKF 76

Query: 127 AKGFLV 132
           ++G +V
Sbjct: 77  SRGLVV 82

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322798207|gb|EFZ20002.1| hypothetical protein SINV_10679 [Solenopsis invicta]

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/68 (70%), Positives = 59/68 (86%)

Query: 67  ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF 126
           ASGNKVSR +++ G+QNIVL GKVI+Q DA++RGDLAN+RTGRYCIISK  VIRPPFKKF
Sbjct: 17  ASGNKVSRLTVLCGSQNIVLHGKVIVQSDAIIRGDLANVRTGRYCIISKNAVIRPPFKKF 76

Query: 127 AKGFLVYP 134
           ++G   +P
Sbjct: 77  SRGVAFFP 84

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030630|gb|EGI70318.1| Dynactin subunit 5 [Acromyrmex echinatior]

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/68 (70%), Positives = 59/68 (86%)

Query: 67  ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF 126
           ASGNKVSR +++ G+QNIVL GKVI+Q DA++RGDLAN+RTGRYCIISK  VIRPPFKKF
Sbjct: 17  ASGNKVSRLTVLCGSQNIVLHGKVIVQSDAIIRGDLANVRTGRYCIISKNAVIRPPFKKF 76

Query: 127 AKGFLVYP 134
           ++G   +P
Sbjct: 77  SRGVAFFP 84

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
UNIPROTKB|F1SAB8	130	DCTN5 "Uncharacterized protein	0.517	0.684	0.510	1.3e-23
FB|FBgn0040228	205	dyn-p25 "dynactin-subunit-p25"	0.534	0.448	0.537	1.9e-21
ZFIN|ZDB-GENE-040718-201	182	dctn5 "dynactin 5" [Danio reri	0.517	0.489	0.520	4.4e-20
MGI|MGI:1891689	182	Dctn5 "dynactin 5" [Mus muscul	0.517	0.489	0.520	5.7e-20
RGD|1305654	181	Dctn5 "dynactin 5 (p25)" [Ratt	0.517	0.491	0.520	5.7e-20
UNIPROTKB|G3V8C0	182	Dctn5 "RCG39275, isoform CRA_b	0.517	0.489	0.520	5.7e-20
UNIPROTKB|F1N8W9	153	DCTN5 "Uncharacterized protein	0.517	0.581	0.510	7.2e-20
UNIPROTKB|Q58D67	163	MGC3248 "Uncharacterized prote	0.517	0.546	0.510	7.2e-20
UNIPROTKB|E2RNC1	182	DCTN5 "Uncharacterized protein	0.517	0.489	0.510	7.2e-20
UNIPROTKB|H3BR94	155	DCTN5 "Dynactin subunit 5" [Ho	0.517	0.574	0.510	7.2e-20

UNIPROTKB|F1SAB8 DCTN5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 236 (88.1 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
 Identities = 49/96 (51%), Positives = 65/96 (67%)

Query:    67 ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF 126
             ASGNKVSR+S++ G+QNIVL GK I+  D ++RGDLAN+R GR+C++    VIRPPFKKF
Sbjct:    17 ASGNKVSRQSVLCGSQNIVLNGKTIVMNDCIIRGDLANVRVGRHCVVKSRSVIRPPFKKF 76

Query:   127 AKGFLVYP---GSTVYLVFTASVRLKSPFAQIYSYI 159
             +KG   +P   G  V++     V      AQI SY+
Sbjct:    77 SKGVAFFPLHIGDHVFIEEDCVVNA----AQIGSYV 108

GO:0005813 "centrosome" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

FB|FBgn0040228 dyn-p25 "dynactin-subunit-p25" [Drosophila melanogaster (taxid:7227)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 50/93 (53%), Positives = 66/93 (70%)

Query:    67 ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF 126
             ASGNKVSR +++ G+QNI+L GKVI+Q  A++RGDLAN+RTGRYC+I K  VIRPP+K+F
Sbjct:    14 ASGNKVSRHTVLCGSQNIILNGKVIVQSGAIIRGDLANVRTGRYCVIGKNSVIRPPYKQF 73

Query:   127 AKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYI 159
             +KG   +P      VF     + S  A I SY+
Sbjct:    74 SKGIAFFPMHVGEHVFVGEGAVVSA-ATIGSYV 105

GO:0005869 "dynactin complex" evidence=ISS;NAS

GO:0007018 "microtubule-based movement" evidence=ISS

GO:0016740 "transferase activity" evidence=IEA

GO:2001019 "positive regulation of retrograde axon cargo transport" evidence=IMP

ZFIN|ZDB-GENE-040718-201 dctn5 "dynactin 5" [Danio rerio (taxid:7955)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 50/96 (52%), Positives = 65/96 (67%)

Query:    67 ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF 126
             ASGNKVSR+S++ G+QNIVL GK I+  D ++RGDLAN+R GR+C+I    VIRPPFKKF
Sbjct:    17 ASGNKVSRQSVLCGSQNIVLNGKTIVMNDCIIRGDLANVRVGRHCVIKSRSVIRPPFKKF 76

Query:   127 AKGFLVYP---GSTVYLVFTASVRLKSPFAQIYSYI 159
             +KG   +P   G  V++     V      AQI SY+
Sbjct:    77 SKGVAFFPLHIGDHVFIEEDCVVNA----AQIRSYV 108

GO:0016740 "transferase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:1891689 Dctn5 "dynactin 5" [Mus musculus (taxid:10090)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 50/96 (52%), Positives = 65/96 (67%)

Query:    67 ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF 126
             ASGNKVSR+S++ G+QNIVL GK II  D ++RGDLAN+R GR+C++    VIRPPFKKF
Sbjct:    17 ASGNKVSRQSVLCGSQNIVLNGKTIIMNDCIIRGDLANVRVGRHCVVKSRSVIRPPFKKF 76

Query:   127 AKGFLVYP---GSTVYLVFTASVRLKSPFAQIYSYI 159
             +KG   +P   G  V++     V      AQI SY+
Sbjct:    77 SKGVAFFPLHIGDHVFIEEDCVVNA----AQIGSYV 108

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005869 "dynactin complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0016740 "transferase activity" evidence=IEA

RGD|1305654 Dctn5 "dynactin 5 (p25)" [Rattus norvegicus (taxid:10116)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 50/96 (52%), Positives = 65/96 (67%)

Query:    67 ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF 126
             ASGNKVSR+S++ G+QNIVL GK II  D ++RGDLAN+R GR+C++    VIRPPFKKF
Sbjct:    16 ASGNKVSRQSVLCGSQNIVLNGKTIIMNDCIIRGDLANVRVGRHCVVKSRSVIRPPFKKF 75

Query:   127 AKGFLVYP---GSTVYLVFTASVRLKSPFAQIYSYI 159
             +KG   +P   G  V++     V      AQI SY+
Sbjct:    76 SKGVAFFPLHIGDHVFIEEDCVVNA----AQIGSYV 107

GO:0005813 "centrosome" evidence=ISO

UNIPROTKB|G3V8C0 Dctn5 "RCG39275, isoform CRA_b" [Rattus norvegicus (taxid:10116)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 50/96 (52%), Positives = 65/96 (67%)

Query:    67 ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF 126
             ASGNKVSR+S++ G+QNIVL GK II  D ++RGDLAN+R GR+C++    VIRPPFKKF
Sbjct:    17 ASGNKVSRQSVLCGSQNIVLNGKTIIMNDCIIRGDLANVRVGRHCVVKSRSVIRPPFKKF 76

Query:   127 AKGFLVYP---GSTVYLVFTASVRLKSPFAQIYSYI 159
             +KG   +P   G  V++     V      AQI SY+
Sbjct:    77 SKGVAFFPLHIGDHVFIEEDCVVNA----AQIGSYV 108

GO:0005813 "centrosome" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|F1N8W9 DCTN5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 49/96 (51%), Positives = 65/96 (67%)

Query:    67 ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF 126
             ASGNKVSR+S++ G+QNIVL GK I+  D ++RGDLAN+R GR+C++    VIRPPFKKF
Sbjct:    15 ASGNKVSRQSVLCGSQNIVLNGKTIVMNDCIIRGDLANVRVGRHCVVKSRSVIRPPFKKF 74

Query:   127 AKGFLVYP---GSTVYLVFTASVRLKSPFAQIYSYI 159
             +KG   +P   G  V++     V      AQI SY+
Sbjct:    75 SKGVAFFPLHIGDHVFIEEDCVVNA----AQIGSYV 106

GO:0016740 "transferase activity" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

UNIPROTKB|Q58D67 MGC3248 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 49/96 (51%), Positives = 65/96 (67%)

Query:    67 ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF 126
             ASGNKVSR+S++ G+QNIVL GK I+  D ++RGDLAN+R GR+C++    VIRPPFKKF
Sbjct:    17 ASGNKVSRQSVLCGSQNIVLNGKTIVMNDCIIRGDLANVRVGRHCVVKSRSVIRPPFKKF 76

Query:   127 AKGFLVYP---GSTVYLVFTASVRLKSPFAQIYSYI 159
             +KG   +P   G  V++     V      AQI SY+
Sbjct:    77 SKGVAFFPLHIGDHVFIEEDCVVNA----AQIGSYV 108

GO:0005813 "centrosome" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|E2RNC1 DCTN5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 49/96 (51%), Positives = 65/96 (67%)

Query:    67 ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF 126
             ASGNKVSR+S++ G+QNIVL GK I+  D ++RGDLAN+R GR+C++    VIRPPFKKF
Sbjct:    17 ASGNKVSRQSVLCGSQNIVLNGKTIVMNDCIIRGDLANVRVGRHCVVKSRSVIRPPFKKF 76

Query:   127 AKGFLVYP---GSTVYLVFTASVRLKSPFAQIYSYI 159
             +KG   +P   G  V++     V      AQI SY+
Sbjct:    77 SKGVAFFPLHIGDHVFIEEDCVVNA----AQIGSYV 108

GO:0005813 "centrosome" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|H3BR94 DCTN5 "Dynactin subunit 5" [Homo sapiens (taxid:9606)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 49/96 (51%), Positives = 65/96 (67%)

Query:    67 ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF 126
             ASGNKVSR+S++ G+QNIVL GK I+  D ++RGDLAN+R GR+C++    VIRPPFKKF
Sbjct:    17 ASGNKVSRQSVLCGSQNIVLNGKTIVMNDCIIRGDLANVRVGRHCVVKSRSVIRPPFKKF 76

Query:   127 AKGFLVYP---GSTVYLVFTASVRLKSPFAQIYSYI 159
             +KG   +P   G  V++     V      AQI SY+
Sbjct:    77 SKGVAFFPLHIGDHVFIEEDCVVNA----AQIGSYV 108

GO:0016740 "transferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9BTE1	DCTN5_HUMAN	No assigned EC number	0.5104	0.5174	0.4890	yes	N/A
Q5R559	DCTN5_PONAB	No assigned EC number	0.5104	0.5174	0.4890	yes	N/A
Q9QZB9	DCTN5_MOUSE	No assigned EC number	0.5208	0.5174	0.4890	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	172
cd03359	161	cd03359, LbH_Dynactin_5, Dynactin 5 (or subunit p2	1e-31
COG0663	176	COG0663, PaaY, Carbonic anhydrases/acetyltransfera	5e-05

>gnl|CDD|100049 cd03359, LbH_Dynactin_5, Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

 Score =  111 bits (279), Expect = 1e-31
 Identities = 54/96 (56%), Positives = 67/96 (69%), Gaps = 7/96 (7%)

Query: 67  ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF 126
           ASGNKVSRKS++ G+QNIVL GK IIQ D ++RGDLA +  GRYCI+S+G VIRPPFKKF
Sbjct: 5   ASGNKVSRKSVICGSQNIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKF 64

Query: 127 AKGFLVYP---GSTVYLVFTASVRLKSPFAQIYSYI 159
           +KG   +P   G  V++     V      AQI SY+
Sbjct: 65  SKGVAFFPLHIGDYVFIGENCVVNA----AQIGSYV 96

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 161

>gnl|CDD|223735 COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

 Score = 41.0 bits (97), Expect = 5e-05
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 6/46 (13%)

Query: 81  AQNIVLTGKVIIQCD------AVLRGDLANIRTGRYCIISKGVVIR 120
           A +  + G V I         AVLRGD+  IR G    I  GVVI 
Sbjct: 21  APSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIH 66

Length = 176

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	172
KOG3121|consensus	184		99.97
COG0663	176	PaaY Carbonic anhydrases/acetyltransferases, isole	99.69
cd03359	161	LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact	99.63
PLN02472	246	uncharacterized protein	99.4
TIGR02287	192	PaaY phenylacetic acid degradation protein PaaY. M	99.36
TIGR03532	231	DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla	99.33
PRK13627	196	carnitine operon protein CaiE; Provisional	99.3
PLN02296	269	carbonate dehydratase	99.3
PRK10502	182	putative acyl transferase; Provisional	99.27
PRK09527	203	lacA galactoside O-acetyltransferase; Reviewed	99.24
PRK10092	183	maltose O-acetyltransferase; Provisional	99.23
cd05825	107	LbH_wcaF_like wcaF-like: This group is composed of	99.22
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	99.16
cd04745	155	LbH_paaY_like paaY-like: This group is composed by	99.16
cd04646	164	LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact	99.15
cd03357	169	LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and	99.14
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	99.13
cd04650	154	LbH_FBP Ferripyochelin Binding Protein (FBP): FBP	99.13
PRK05293	380	glgC glucose-1-phosphate adenylyltransferase; Prov	99.12
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	99.12
cd04645	153	LbH_gamma_CA_like Gamma carbonic anhydrase-like: T	99.11
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	99.03
COG0663	176	PaaY Carbonic anhydrases/acetyltransferases, isole	99.03
PRK00844	407	glgC glucose-1-phosphate adenylyltransferase; Prov	99.03
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	99.01
cd00208	78	LbetaH Left-handed parallel beta-Helix (LbetaH or	98.98
cd03360	197	LbH_AT_putative Putative Acyltransferase (AT), Lef	98.97
cd00710	167	LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo	98.97
cd04647	109	LbH_MAT_like Maltose O-acyltransferase (MAT)-like:	98.96
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	98.93
cd03351	254	LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr	98.91
cd03349	145	LbH_XAT Xenobiotic acyltransferase (XAT): The XAT	98.9
cd05636	163	LbH_G1P_TT_C_like Putative glucose-1-phosphate thy	98.9
PRK05289	262	UDP-N-acetylglucosamine acyltransferase; Provision	98.89
cd03350	139	LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d	98.89
TIGR02092	369	glgD glucose-1-phosphate adenylyltransferase, GlgD	98.89
cd00710	167	LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo	98.88
PLN02296	269	carbonate dehydratase	98.86
PLN02472	246	uncharacterized protein	98.86
cd03359	161	LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact	98.86
TIGR02091	361	glgC glucose-1-phosphate adenylyltransferase. This	98.85
TIGR01852	254	lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac	98.85
PRK09677	192	putative lipopolysaccharide biosynthesis O-acetyl	98.84
PRK14359	430	glmU bifunctional N-acetylglucosamine-1-phosphate	98.84
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	98.83
COG0110	190	WbbJ Acetyltransferase (isoleucine patch superfami	98.82
PRK00725	425	glgC glucose-1-phosphate adenylyltransferase; Prov	98.81
cd03358	119	LbH_WxcM_N_like WcxM-like, Left-handed parallel be	98.81
COG1044	338	LpxD UDP-3-O-[3-hydroxymyristoyl]	98.8
cd03360	197	LbH_AT_putative Putative Acyltransferase (AT), Lef	98.8
cd04650	154	LbH_FBP Ferripyochelin Binding Protein (FBP): FBP	98.79
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	98.78
TIGR00965	269	dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate	98.77
TIGR03532	231	DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla	98.76
PRK05289	262	UDP-N-acetylglucosamine acyltransferase; Provision	98.76
TIGR02287	192	PaaY phenylacetic acid degradation protein PaaY. M	98.75
cd04745	155	LbH_paaY_like paaY-like: This group is composed by	98.74
PRK02862	429	glgC glucose-1-phosphate adenylyltransferase; Prov	98.74
PRK12461	255	UDP-N-acetylglucosamine acyltransferase; Provision	98.74
cd03351	254	LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr	98.74
cd04646	164	LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact	98.73
cd05635	101	LbH_unknown Uncharacterized proteins, Left-handed	98.72
TIGR01853	324	lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam	98.72
PRK13627	196	carnitine operon protein CaiE; Provisional	98.72
TIGR01853	324	lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam	98.71
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	98.71
PRK00892	343	lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac	98.7
PRK10191	146	putative acyl transferase; Provisional	98.7
cd04652	81	LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal	98.69
TIGR01172	162	cysE serine O-acetyltransferase. Cysteine biosynth	98.69
cd03353	193	LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl	98.69
PRK14354	458	glmU bifunctional N-acetylglucosamine-1-phosphate	98.69
TIGR03308	204	phn_thr-fam phosphonate metabolim protein, transfe	98.69
PRK00892	343	lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac	98.67
COG1044	338	LpxD UDP-3-O-[3-hydroxymyristoyl]	98.67
cd05636	163	LbH_G1P_TT_C_like Putative glucose-1-phosphate thy	98.67
TIGR01852	254	lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac	98.66
cd03350	139	LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d	98.66
cd05635	101	LbH_unknown Uncharacterized proteins, Left-handed	98.66
PRK09451	456	glmU bifunctional N-acetylglucosamine-1-phosphate	98.65
cd00208	78	LbetaH Left-handed parallel beta-Helix (LbetaH or	98.64
KOG1322|consensus	371		98.64
cd05787	79	LbH_eIF2B_epsilon eIF-2B epsilon subunit, central	98.64
cd03357	169	LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and	98.63
cd04645	153	LbH_gamma_CA_like Gamma carbonic anhydrase-like: T	98.62
cd03358	119	LbH_WxcM_N_like WcxM-like, Left-handed parallel be	98.61
PRK11132	273	cysE serine acetyltransferase; Provisional	98.59
cd03352	205	LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas	98.59
PLN02241	436	glucose-1-phosphate adenylyltransferase	98.59
cd05825	107	LbH_wcaF_like wcaF-like: This group is composed of	98.59
COG2171	271	DapD Tetrahydrodipicolinate N-succinyltransferase	98.58
KOG1461|consensus	673		98.56
PRK12461	255	UDP-N-acetylglucosamine acyltransferase; Provision	98.56
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	98.56
cd04647	109	LbH_MAT_like Maltose O-acyltransferase (MAT)-like:	98.55
PLN02739	355	serine acetyltransferase	98.53
PRK11830	272	dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-	98.53
cd03354	101	LbH_SAT Serine acetyltransferase (SAT): SAT cataly	98.53
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	98.52
PLN02694	294	serine O-acetyltransferase	98.52
cd03356	79	LbH_G1P_AT_C_like Left-handed parallel beta-Helix	98.51
cd03352	205	LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas	98.49
cd03353	193	LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl	98.49
COG1207	460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	98.48
PRK09677	192	putative lipopolysaccharide biosynthesis O-acetyl	98.48
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	98.48
PRK09527	203	lacA galactoside O-acetyltransferase; Reviewed	98.47
TIGR00965	269	dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate	98.46
cd04652	81	LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal	98.46
cd05787	79	LbH_eIF2B_epsilon eIF-2B epsilon subunit, central	98.43
PLN02357	360	serine acetyltransferase	98.43
PRK10092	183	maltose O-acetyltransferase; Provisional	98.42
cd05824	80	LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr	98.42
PRK10191	146	putative acyl transferase; Provisional	98.42
cd05824	80	LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr	98.42
PRK10502	182	putative acyl transferase; Provisional	98.41
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	98.41
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	98.4
cd03356	79	LbH_G1P_AT_C_like Left-handed parallel beta-Helix	98.39
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	98.37
PRK09451	456	glmU bifunctional N-acetylglucosamine-1-phosphate	98.36
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	98.36
cd04651	104	LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera	98.35
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	98.35
COG1045	194	CysE Serine acetyltransferase [Amino acid transpor	98.32
KOG1461|consensus	673		98.31
KOG4042|consensus	190		98.31
KOG3121|consensus	184		98.27
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	98.26
COG0448	393	GlgC ADP-glucose pyrophosphorylase [Carbohydrate t	98.23
PRK11830	272	dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-	98.22
cd04649	147	LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah	98.19
TIGR02353	695	NRPS_term_dom non-ribosomal peptide synthetase ter	98.19
TIGR03536	341	DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl	98.18
TIGR03308	204	phn_thr-fam phosphonate metabolim protein, transfe	98.18
cd03354	101	LbH_SAT Serine acetyltransferase (SAT): SAT cataly	98.16
PRK11132	273	cysE serine acetyltransferase; Provisional	98.16
COG1043	260	LpxA Acyl-[acyl carrier protein]	98.16
PRK14359	430	glmU bifunctional N-acetylglucosamine-1-phosphate	98.15
KOG1462|consensus	433		98.14
cd03349	145	LbH_XAT Xenobiotic acyltransferase (XAT): The XAT	98.1
PLN02739	355	serine acetyltransferase	98.06
PLN02357	360	serine acetyltransferase	98.06
PF14602	34	Hexapep_2: Hexapeptide repeat of succinyl-transfer	98.06
TIGR01172	162	cysE serine O-acetyltransferase. Cysteine biosynth	98.05
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	98.04
TIGR02353	695	NRPS_term_dom non-ribosomal peptide synthetase ter	98.04
COG1207	460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	98.04
PRK14354	458	glmU bifunctional N-acetylglucosamine-1-phosphate	98.04
TIGR03535	319	DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo	98.03
COG1045	194	CysE Serine acetyltransferase [Amino acid transpor	98.02
TIGR03535	319	DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo	98.02
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	98.02
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	97.98
cd04651	104	LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera	97.96
COG0110	190	WbbJ Acetyltransferase (isoleucine patch superfami	97.96
KOG1460|consensus	407		97.95
cd04649	147	LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah	97.92
PLN02694	294	serine O-acetyltransferase	97.91
COG1043	260	LpxA Acyl-[acyl carrier protein]	97.91
PF00132	36	Hexapep: Bacterial transferase hexapeptide (six re	97.89
TIGR03536	341	DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl	97.82
PF14602	34	Hexapep_2: Hexapeptide repeat of succinyl-transfer	97.82
PF00132	36	Hexapep: Bacterial transferase hexapeptide (six re	97.79
COG2171	271	DapD Tetrahydrodipicolinate N-succinyltransferase	97.78
PRK05293	380	glgC glucose-1-phosphate adenylyltransferase; Prov	97.76
KOG4750|consensus	269		97.57
TIGR02091	361	glgC glucose-1-phosphate adenylyltransferase. This	97.52
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	97.44
TIGR02092	369	glgD glucose-1-phosphate adenylyltransferase, GlgD	97.32
PRK00725	425	glgC glucose-1-phosphate adenylyltransferase; Prov	97.19
PRK00844	407	glgC glucose-1-phosphate adenylyltransferase; Prov	97.16
PLN02241	436	glucose-1-phosphate adenylyltransferase	97.14
KOG4750|consensus	269		97.02
COG1209	286	RfbA dTDP-glucose pyrophosphorylase [Cell envelope	97.02
KOG1460|consensus	407		96.93
PRK02862	429	glgC glucose-1-phosphate adenylyltransferase; Prov	96.89
KOG1462|consensus	433		96.8
COG0448	393	GlgC ADP-glucose pyrophosphorylase [Carbohydrate t	96.38
KOG4042|consensus	190		94.25
KOG1322|consensus	371		93.66
COG4801	277	Predicted acyltransferase [General function predic	86.46
COG4801	277	Predicted acyltransferase [General function predic	85.01

>KOG3121|consensus

Probab=99.97  E-value=7.4e-32  Score=214.28  Aligned_cols=110  Identities=50%  Similarity=0.842  Sum_probs=105.8

Q ss_pred             CCccceeeCCCceEEeecccceeecccccceeeeecCCCCceeeeccceecccCCchhhhhhccccccCCeeecCCeEec
Q psy2215           1 MELSNIYYDRDSYVETVSSGQRCLLANTNRRVWVQSQPSGAVDFLSRGWWFESKSSHKILVYSGAVASGNKVSRKSLVAG   80 (172)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~W~D~~~p~~Ll~~~~~~~~gn~Is~~a~I~G   80 (172)
                      |||.+.|||++||+||                                                  ++|||++|+..|+|
T Consensus         1 Melp~~yY~k~Ey~eT--------------------------------------------------asGNKVsr~~vlcG   30 (184)
T KOG3121|consen    1 MELPIVYYDKTEYAET--------------------------------------------------ASGNKVSRKHVLCG   30 (184)
T ss_pred             CCCcceeecchhhhhh--------------------------------------------------ccCCcccceeEeec
Confidence            9999999999999999                                                  89999999999999


Q ss_pred             ccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEee---CCCeEECCCcEEEecCCCeEECC
Q psy2215          81 AQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYP---GSTVYLVFTASVRLKSPFAQIYS  157 (172)
Q Consensus        81 ~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~p---Gd~V~IG~navI~i~~pga~IGs  157 (172)
                      +|||.|.|+++++++++||||+++|+||+||+++.+++|+|+.|+|+||..++|   ||||+|++.|++.    +++||+
T Consensus        31 sQNI~lnGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVn----AAqIgs  106 (184)
T KOG3121|consen   31 SQNILLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVN----AAQIGS  106 (184)
T ss_pred             cceEEEcCcEEEeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEee----hhhhee
Confidence            999999999999999999999999999999999999999999999999987766   9999999999999    999999


Q ss_pred             CceeCCe
Q psy2215         158 YIIAPCP  164 (172)
Q Consensus       158 ~v~iga~  164 (172)
                      ++++|.+
T Consensus       107 yVh~Gkn  113 (184)
T KOG3121|consen  107 YVHLGKN  113 (184)
T ss_pred             eeEeccc
Confidence            9996654

>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

Probab=99.69  E-value=1.4e-16  Score=129.74  Aligned_cols=86  Identities=30%  Similarity=0.323  Sum_probs=77.3

Q ss_pred             cCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215          68 SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR  147 (172)
Q Consensus        68 ~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~  147 (172)
                      ....|++.|.|.|  +++|+.++.|+++++||||..+|+||++|+|++||+||...     ++++.+||+|+||++|+|+
T Consensus        16 ~~a~Va~~A~viG--dV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~-----~~p~~IG~~vtIGH~aivH   88 (176)
T COG0663          16 PTAFVAPSATVIG--DVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADP-----GYPVTIGDDVTIGHGAVVH   88 (176)
T ss_pred             CceEECCCCEEEE--eEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCC-----CCCeEECCCcEEcCccEEE
Confidence            4467899999999  79999999999999999999999999999999999999863     3567889999999999999


Q ss_pred             ecCCCeEECCCceeCCe
Q psy2215         148 LKSPFAQIYSYIIAPCP  164 (172)
Q Consensus       148 i~~pga~IGs~v~iga~  164 (172)
                          ||+||++|.+|-.
T Consensus        89 ----Gc~Ig~~~lIGmg  101 (176)
T COG0663          89 ----GCTIGDNVLIGMG  101 (176)
T ss_pred             ----EeEECCCcEEecC
Confidence                8999999885433

>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.63  E-value=3.4e-15  Score=117.77  Aligned_cols=81  Identities=59%  Similarity=0.969  Sum_probs=71.0

Q ss_pred             ccCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCce---EEeeCCCeEECCC
Q psy2215          67 ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGF---LVYPGSTVYLVFT  143 (172)
Q Consensus        67 ~~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~---~~~pGd~V~IG~n  143 (172)
                      ..|++|++++.|.|.++|.|++++.|+++|+|+|+..++.||++|.|+++|+|+++.+......   .+.+||+++||++
T Consensus         5 ~~~~~i~~~~~i~g~~~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~   84 (161)
T cd03359           5 ASGNKVSRKSVICGSQNIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGEN   84 (161)
T ss_pred             cCCCeecchheeccCCCEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCC
Confidence            7899999999999999999999999999999999988999999999999999998765433322   2456999999999


Q ss_pred             cEEE
Q psy2215         144 ASVR  147 (172)
Q Consensus       144 avI~  147 (172)
                      |++.
T Consensus        85 ~~i~   88 (161)
T cd03359          85 CVVN   88 (161)
T ss_pred             CEEE
Confidence            9887

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PLN02472 uncharacterized protein

Probab=99.40  E-value=2.4e-12  Score=109.45  Aligned_cols=88  Identities=20%  Similarity=0.220  Sum_probs=70.7

Q ss_pred             cCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCce--EEeeCCCeEECCCcE
Q psy2215          68 SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGF--LVYPGSTVYLVFTAS  145 (172)
Q Consensus        68 ~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~--~~~pGd~V~IG~nav  145 (172)
                      ....+.+.+.+.|  +++||+++.|+++++|+||..+|.||++|.|++||+|++..... .++  .+.+|++|+||++|+
T Consensus        64 ~~~~I~p~a~i~G--~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~-~~i~~~tvIG~~v~IG~~s~  140 (246)
T PLN02472         64 VDAYVAPNVVLAG--QVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSP-TGLPAETLIDRYVTIGAYSL  140 (246)
T ss_pred             CCCEECCCCEEec--CEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccc-cCCCCCcEECCCCEECCCcE
Confidence            5667888999999  69999999999999999999999999999999999999754211 111  256699999999998


Q ss_pred             EEecCCCeEECCCceeC
Q psy2215         146 VRLKSPFAQIYSYIIAP  162 (172)
Q Consensus       146 I~i~~pga~IGs~v~ig  162 (172)
                      |+    +++||+++.+|
T Consensus       141 L~----~~~Igd~v~IG  153 (246)
T PLN02472        141 LR----SCTIEPECIIG  153 (246)
T ss_pred             EC----CeEEcCCCEEC
Confidence            88    66666665543

>TIGR02287 PaaY phenylacetic acid degradation protein PaaY

Probab=99.36  E-value=4.3e-12  Score=104.02  Aligned_cols=84  Identities=15%  Similarity=0.088  Sum_probs=65.2

Q ss_pred             ccCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEE
Q psy2215          67 ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASV  146 (172)
Q Consensus        67 ~~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI  146 (172)
                      ..+..|++.+.|.|  ++.||+++.|+++|+|+||..++.||++|.||+||+|+...     +..+.+|++++||++|+|
T Consensus        12 ~~~~~I~~~a~I~G--~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~-----~~~siIg~~~~Ig~~a~I   84 (192)
T TIGR02287        12 HPEAYVHPTAVLIG--DVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFP-----GQDTVVEENGHVGHGAIL   84 (192)
T ss_pred             CCCcEECCCCEEEe--eEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccC-----CCCCeECCCCEECCCCEE
Confidence            35667888999998  69999999999999999999999999999999999997531     111345777777777776


Q ss_pred             EecCCCeEECCCcee
Q psy2215         147 RLKSPFAQIYSYIIA  161 (172)
Q Consensus       147 ~i~~pga~IGs~v~i  161 (172)
                      +    ++.|++++.+
T Consensus        85 ~----~siIg~~~~I   95 (192)
T TIGR02287        85 H----GCIVGRNALV   95 (192)
T ss_pred             c----CCEECCCCEE
Confidence            6    4555544443

Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.

>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase

Probab=99.33  E-value=4.3e-12  Score=106.59  Aligned_cols=111  Identities=11%  Similarity=0.107  Sum_probs=68.6

Q ss_pred             eeeccceecccCCchhhhhhccccccCC---------------------eeecCCeEecccceEECCCeEECCCcEEcCC
Q psy2215          43 DFLSRGWWFESKSSHKILVYSGAVASGN---------------------KVSRKSLVAGAQNIVLTGKVIIQCDAVLRGD  101 (172)
Q Consensus        43 ~~~~~g~W~D~~~p~~Ll~~~~~~~~gn---------------------~Is~~a~I~G~~nI~Igg~v~I~~~avIrGd  101 (172)
                      -.+.+|+|.|+   |++|+++...+.+.                     .|.+.+.+.|  ++.||.++.|+++++|.++
T Consensus        42 ~~~~~gyW~Di---~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~g--~v~IG~~~~I~~~~~I~~~  116 (231)
T TIGR03532        42 SGVLFGEWEDI---EPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIRD--QVIIGDNAVIMMGAVINIG  116 (231)
T ss_pred             cEEEEEeHHHH---HHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEeC--CeEECCCCEEecCcccCCC
Confidence            45678999999   99999888887663                     3344444444  4666666666666666544


Q ss_pred             CcceEECCCCeeCCCCEEccCCcc-----CCCc------------eEEeeCCCeEECCCcEEEecCCCeEECCCceeCCe
Q psy2215         102 LANIRTGRYCIISKGVVIRPPFKK-----FAKG------------FLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCP  164 (172)
Q Consensus       102 l~~V~IG~~c~Ig~navI~p~~~~-----~~~g------------~~~~pGd~V~IG~navI~i~~pga~IGs~v~iga~  164 (172)
                         +.||++|.|+++++|++....     ...+            ..+.+|++|+||++++|.   ++++||+++.+++.
T Consensus       117 ---~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI~---~g~~Ig~~~~Igag  190 (231)
T TIGR03532       117 ---AEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVIL---EGVRVGKGAVVAAG  190 (231)
T ss_pred             ---eEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCCEEc---CCCEECCCCEECCC
Confidence               455555555444444322110     0000            013458888888888887   78888888886543

Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.

>PRK13627 carnitine operon protein CaiE; Provisional

Probab=99.30  E-value=2.3e-11  Score=100.06  Aligned_cols=84  Identities=15%  Similarity=0.114  Sum_probs=63.2

Q ss_pred             ccCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEE
Q psy2215          67 ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASV  146 (172)
Q Consensus        67 ~~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI  146 (172)
                      ....+|++.+.|.|  ++.||.++.|+++|+|+||..++.||++|.||++|+|+....     ....+|++++||++|++
T Consensus        14 ~~~a~I~~~a~I~g--~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~-----~~siIg~~~~Ig~~a~i   86 (196)
T PRK13627         14 HPTAFVHPSAVLIG--DVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCD-----TDTIVGENGHIGHGAIL   86 (196)
T ss_pred             CCCeEECCCCEEEC--ceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCC-----CCCEECCCCEECCCcEE
Confidence            35567888899998  589999999999999999988899999999999999986532     11334666666666665


Q ss_pred             EecCCCeEECCCcee
Q psy2215         147 RLKSPFAQIYSYIIA  161 (172)
Q Consensus       147 ~i~~pga~IGs~v~i  161 (172)
                      +    +++||+++.+
T Consensus        87 ~----g~vIG~~v~I   97 (196)
T PRK13627         87 H----GCVIGRDALV   97 (196)
T ss_pred             e----eEEECCCCEE
Confidence            5    4444444443

>PLN02296 carbonate dehydratase

Probab=99.30  E-value=2.1e-11  Score=104.88  Aligned_cols=87  Identities=17%  Similarity=0.189  Sum_probs=66.9

Q ss_pred             cCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCc-eEEeeCCCeEECCCcEE
Q psy2215          68 SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKG-FLVYPGSTVYLVFTASV  146 (172)
Q Consensus        68 ~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g-~~~~pGd~V~IG~navI  146 (172)
                      .+..|.+.+.+.|  ++.||.++.|+++|+|+|+..++.||++|.|+++|+|+......... ..+.+|++|+||++|+|
T Consensus        57 ~~~~I~p~A~V~G--~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI  134 (269)
T PLN02296         57 KDAFVAPSASVIG--DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVL  134 (269)
T ss_pred             CCCEECCCcEEEc--ceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCcee
Confidence            5667888899988  69999999999999999998899999999999999998543211111 12456888888888877


Q ss_pred             EecCCCeEECCCce
Q psy2215         147 RLKSPFAQIYSYII  160 (172)
Q Consensus       147 ~i~~pga~IGs~v~  160 (172)
                      +    +++||++|.
T Consensus       135 ~----g~~Igd~v~  144 (269)
T PLN02296        135 H----GCTVEDEAF  144 (269)
T ss_pred             c----CCEECCCcE
Confidence            6    555555554

>PRK10502 putative acyl transferase; Provisional

Probab=99.27  E-value=4.8e-11  Score=96.35  Aligned_cols=103  Identities=18%  Similarity=0.174  Sum_probs=80.7

Q ss_pred             hhhhccccc-cCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCc------eE
Q psy2215          59 ILVYSGAVA-SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKG------FL  131 (172)
Q Consensus        59 Ll~~~~~~~-~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g------~~  131 (172)
                      ||.+.+... .+..|...+.|.++.++.||+++.|++++.|.. ...++||++|.|++++.|....+.+...      -+
T Consensus        46 ~lr~~ga~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~-~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~  124 (182)
T PRK10502         46 LLRLFGAKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYN-LGEITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAP  124 (182)
T ss_pred             HHHHhccccCCCcEEcCCEEEecCCeEEECCCeEECCCceecc-cCceEECCCcEECCCeEEECCCCCCcCCCcccccCC
Confidence            555554433 555677778888778999999999999999983 5579999999999999998665433111      12


Q ss_pred             EeeCCCeEECCCcEEEecCCCeEECCCceeCCeE
Q psy2215         132 VYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCPL  165 (172)
Q Consensus       132 ~~pGd~V~IG~navI~i~~pga~IGs~v~iga~i  165 (172)
                      +.+||+|+||++|+|.   |+++||+++.+++..
T Consensus       125 i~Igd~~~Ig~~a~I~---~Gv~Ig~~~vIga~s  155 (182)
T PRK10502        125 IVIGEGCWLAADVFVA---PGVTIGSGAVVGARS  155 (182)
T ss_pred             EEEcCCcEEcCCCEEc---CCCEECCCCEECCCC
Confidence            4669999999999999   999999999976543

>PRK09527 lacA galactoside O-acetyltransferase; Reviewed

Probab=99.24  E-value=7.2e-11  Score=97.86  Aligned_cols=100  Identities=13%  Similarity=0.122  Sum_probs=74.9

Q ss_pred             hccccccCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccC-----CCc----eEE
Q psy2215          62 YSGAVASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF-----AKG----FLV  132 (172)
Q Consensus        62 ~~~~~~~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~-----~~g----~~~  132 (172)
                      +.+....+..|.+...+....|+.||++++|+.+++|.+ ..+++||++|.|+++|.|....+.+     ..+    -++
T Consensus        54 ~~~~ig~~~~I~~~~~~~~g~ni~IG~~v~In~~~~I~d-~~~I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi  132 (203)
T PRK09527         54 MFATVGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVD-DYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPI  132 (203)
T ss_pred             hhhhcCCCcEEcCCEEEeeCCCcEEcCCcEECCCcEEec-CCCEEECCCCEECCCCEEEeCCCCCChhhccccccccCCe
Confidence            333333455565555553347999999999999999984 4679999999999999998543221     112    125


Q ss_pred             eeCCCeEECCCcEEEecCCCeEECCCceeCCeE
Q psy2215         133 YPGSTVYLVFTASVRLKSPFAQIYSYIIAPCPL  165 (172)
Q Consensus       133 ~pGd~V~IG~navI~i~~pga~IGs~v~iga~i  165 (172)
                      .+||+|+||++|+|.   ++++||+++.+++..
T Consensus       133 ~IGd~v~IG~~~~I~---~gv~IG~~~vIgags  162 (203)
T PRK09527        133 TIGNNVWIGSHVVIN---PGVTIGDNSVIGAGS  162 (203)
T ss_pred             EECCCcEECCCCEEc---CCCEECCCCEECCCC
Confidence            679999999999999   999999999966543

>PRK10092 maltose O-acetyltransferase; Provisional

Probab=99.23  E-value=9.3e-11  Score=95.41  Aligned_cols=80  Identities=25%  Similarity=0.357  Sum_probs=66.0

Q ss_pred             ccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCC-----c----eEEeeCCCeEECCCcEEEecCC
Q psy2215          81 AQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAK-----G----FLVYPGSTVYLVFTASVRLKSP  151 (172)
Q Consensus        81 ~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~-----g----~~~~pGd~V~IG~navI~i~~p  151 (172)
                      ..++.||++++|+.+|+|. |..+|+||++|.|+++|+|....+....     +    -++.+||+|+||++|+|.   |
T Consensus        71 g~~i~iG~~~~in~~~~i~-d~~~I~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~---~  146 (183)
T PRK10092         71 GYNIFLGNNFYANFDCVML-DVCPIRIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGGRAVIN---P  146 (183)
T ss_pred             cCCcEEcCCcEECCceEEe-cCceEEECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCCcEECCCCEEC---C
Confidence            4689999999999999995 6678999999999999999865543321     1    125669999999999999   9


Q ss_pred             CeEECCCceeCCe
Q psy2215         152 FAQIYSYIIAPCP  164 (172)
Q Consensus       152 ga~IGs~v~iga~  164 (172)
                      +++||+++++++.
T Consensus       147 gv~IG~~~vIgag  159 (183)
T PRK10092        147 GVTIGDNVVVASG  159 (183)
T ss_pred             CCEECCCCEECCC
Confidence            9999999996554

>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E

Probab=99.22  E-value=9.6e-11  Score=86.55  Aligned_cols=80  Identities=18%  Similarity=0.176  Sum_probs=64.9

Q ss_pred             cceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCc-e-----EEeeCCCeEECCCcEEEecCCCeEE
Q psy2215          82 QNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKG-F-----LVYPGSTVYLVFTASVRLKSPFAQI  155 (172)
Q Consensus        82 ~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g-~-----~~~pGd~V~IG~navI~i~~pga~I  155 (172)
                      .|+.||+++.|+++++|. +...++||++|.|++++.|....+.+... +     ++.+||+|+||.++.|.   ++++|
T Consensus         2 ~~i~iG~~~~I~~~~~i~-~~~~i~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~---~g~~I   77 (107)
T cd05825           2 WNLTIGDNSWIGEGVWIY-NLAPVTIGSDACISQGAYLCTGSHDYRSPAFPLITAPIVIGDGAWVAAEAFVG---PGVTI   77 (107)
T ss_pred             ceEEECCCCEECCCCEEe-eCCceEECCCCEECCCeEeecCCCCCCcCccceecCCEEECCCCEECCCCEEC---CCCEE
Confidence            589999999999999998 34569999999999999998655433222 1     24569999999999999   99999


Q ss_pred             CCCceeCCeE
Q psy2215         156 YSYIIAPCPL  165 (172)
Q Consensus       156 Gs~v~iga~i  165 (172)
                      |+++.+++..
T Consensus        78 g~~~~i~~gs   87 (107)
T cd05825          78 GEGAVVGARS   87 (107)
T ss_pred             CCCCEECCCC
Confidence            9999965543

coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.16  E-value=1e-10  Score=105.11  Aligned_cols=90  Identities=18%  Similarity=0.255  Sum_probs=60.2

Q ss_pred             eeccce--ecccCCchhhhhhcccccc---------CC-eeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCC
Q psy2215          44 FLSRGW--WFESKSSHKILVYSGAVAS---------GN-KVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYC  111 (172)
Q Consensus        44 ~~~~g~--W~D~~~p~~Ll~~~~~~~~---------gn-~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c  111 (172)
                      +..+++  |+|.++|+++++++.+...         +. .+.+.+...+ .++.|++++.|+++|+|.++   +.||++|
T Consensus       218 ~~~~~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~-~~v~ig~~~~I~~~~~I~~~---~~Ig~~~  293 (459)
T PRK14355        218 FPVADPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLIDPETTYID-RGVVIGRDTTIYPGVCISGD---TRIGEGC  293 (459)
T ss_pred             EEcCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCceEEC-CCeEEcCCCEEeCCcEEeCC---CEECCCC
Confidence            344566  9999999999888654432         21 2233333333 36788888888888888876   7888888


Q ss_pred             eeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215         112 IISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR  147 (172)
Q Consensus       112 ~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~  147 (172)
                      .|+++|+|+.          ..+|++|+|+++|+|.
T Consensus       294 ~I~~~~~I~~----------~~Ig~~~~I~~~~~i~  319 (459)
T PRK14355        294 TIEQGVVIKG----------CRIGDDVTVKAGSVLE  319 (459)
T ss_pred             EECCCCEEeC----------CEEcCCCEECCCeEEe
Confidence            8888888864          2235555555555554

>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

Probab=99.16  E-value=4e-10  Score=88.13  Aligned_cols=53  Identities=21%  Similarity=0.310  Sum_probs=45.5

Q ss_pred             ccCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEcc
Q psy2215          67 ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRP  121 (172)
Q Consensus        67 ~~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p  121 (172)
                      ..+..+.+.+.|.|  ++.||+++.|+++|+|+++..++.||++|.|+++|+|+.
T Consensus         4 ~~~~~i~~~a~i~g--~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~   56 (155)
T cd04745           4 DPSSFVHPTAVLIG--DVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHG   56 (155)
T ss_pred             CCCeEECCCCEEEc--cEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEee
Confidence            34555777888888  799999999999999998877899999999999999954

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.

>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.15  E-value=4.4e-10  Score=89.35  Aligned_cols=91  Identities=20%  Similarity=0.188  Sum_probs=67.2

Q ss_pred             CCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCcc---------------CCCce---
Q psy2215          69 GNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKK---------------FAKGF---  130 (172)
Q Consensus        69 gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~---------------~~~g~---  130 (172)
                      +..|++.+.|.|  ++.||+++.|+++++|..+..++.||++|.|+++|+|+.+...               +..+.   
T Consensus         5 ~~~I~~~a~i~g--~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~   82 (164)
T cd04646           5 GAVVCQESEIRG--DVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCE   82 (164)
T ss_pred             CcEECCCCEEcC--ceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEE
Confidence            445667777776  7899999999999999866567999999999999999865321               01111   


Q ss_pred             EEeeCCCeEECCCcEEEecCCCeEECCCceeCCe
Q psy2215         131 LVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCP  164 (172)
Q Consensus       131 ~~~pGd~V~IG~navI~i~~pga~IGs~v~iga~  164 (172)
                      .+.+||+|+||++|+|.   ++++||+++.+|+.
T Consensus        83 ~~~IGd~~~Ig~~a~I~---~gv~Ig~~~~Igag  113 (164)
T cd04646          83 ALKIGNNNVFESKSFVG---KNVIITDGCIIGAG  113 (164)
T ss_pred             eeEECCCCEEeCCCEEC---CCCEECCCCEEeCC
Confidence            13448888888888887   78888888886544

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates

Probab=99.14  E-value=5e-10  Score=88.95  Aligned_cols=81  Identities=15%  Similarity=0.125  Sum_probs=65.0

Q ss_pred             ccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCC---------ceEEeeCCCeEECCCcEEEecCC
Q psy2215          81 AQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAK---------GFLVYPGSTVYLVFTASVRLKSP  151 (172)
Q Consensus        81 ~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~---------g~~~~pGd~V~IG~navI~i~~p  151 (172)
                      ..++.||+++.|+++++|. +..+++||++|.|+++|.|.+..+.+..         +-++.+||+|+||++|+|.   +
T Consensus        60 ~~~i~IG~~v~I~~~~~i~-~~~~i~IG~~v~Ig~~~~I~~~~h~~~~~~~~~~~~~~~~v~IG~~~~Ig~~a~I~---~  135 (169)
T cd03357          60 GYNIHIGDNFYANFNCTIL-DVAPVTIGDNVLIGPNVQIYTAGHPLDPEERNRGLEYAKPITIGDNVWIGGGVIIL---P  135 (169)
T ss_pred             CCcCEECCCceEcCCEEEe-ccCcEEECCCCEECCCCEEEeCCCCCChhHccccceecCCcEeCCCEEECCCCEEe---C
Confidence            3579999999999999987 3356999999999999999876543211         1125669999999999999   9


Q ss_pred             CeEECCCceeCCeE
Q psy2215         152 FAQIYSYIIAPCPL  165 (172)
Q Consensus       152 ga~IGs~v~iga~i  165 (172)
                      +++||+++.+|+..
T Consensus       136 gv~Ig~~~~Vgaga  149 (169)
T cd03357         136 GVTIGDNSVIGAGS  149 (169)
T ss_pred             CCEECCCCEECCCC
Confidence            99999999976543

MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=99.13  E-value=1.8e-10  Score=101.99  Aligned_cols=113  Identities=15%  Similarity=0.177  Sum_probs=69.0

Q ss_pred             CceeeeccceecccCCchhhhhhccccccCCeeecCCeEeccc----ceEECCCeEECCCcEEcCCCcceEECCCCeeCC
Q psy2215          40 GAVDFLSRGWWFESKSSHKILVYSGAVASGNKVSRKSLVAGAQ----NIVLTGKVIIQCDAVLRGDLANIRTGRYCIISK  115 (172)
Q Consensus        40 ~~~~~~~~g~W~D~~~p~~Ll~~~~~~~~gn~Is~~a~I~G~~----nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~  115 (172)
                      ...-+..+|.|.|+++|||++.++........-..........    .+.+.+.++|+++|+|+..   +.||++|+||+
T Consensus       208 ~v~~~~~~g~W~dig~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gp~~ig~~~~i~~~---~~i~~~~~ig~  284 (358)
T COG1208         208 DVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRSAYIIGPVVIGPGAKIGPG---ALIGPYTVIGE  284 (358)
T ss_pred             cEEEEEeCCeEEeCCCHHHHHHHHHHHHhcccccccccccccccccccceEeCCEEECCCCEECCC---CEECCCcEECC
Confidence            3556788899999999999999998877533211111111000    0444555555555555554   45555566666


Q ss_pred             CCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECCCceeCC
Q psy2215         116 GVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPC  163 (172)
Q Consensus       116 navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~iga  163 (172)
                      ||.|+...+.    ....+.|+|.||+++.|.    ++.|+++|.+|+
T Consensus       285 ~~~I~~~~~i----~~Sii~~~~~i~~~~~i~----~sIi~~~~~ig~  324 (358)
T COG1208         285 GVTIGNGVEI----KNSIIMDNVVIGHGSYIG----DSIIGENCKIGA  324 (358)
T ss_pred             CCEECCCcEE----EeeEEEcCCEECCCCEEe----eeEEcCCcEECC
Confidence            6666655321    012358899999999999    666666666664

>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition

Probab=99.13  E-value=6.7e-10  Score=87.36  Aligned_cols=74  Identities=26%  Similarity=0.324  Sum_probs=52.5

Q ss_pred             ccCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEE
Q psy2215          67 ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASV  146 (172)
Q Consensus        67 ~~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI  146 (172)
                      ..+..+++.+.|.|  ++.||+++.|+++++|+++..++.||++|.|+++|.|+....     ..+.+|+++.|+++|.+
T Consensus         4 ~~~~~i~~~~~i~~--~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~-----~~~~Ig~~~~I~~~~~i   76 (154)
T cd04650           4 SPKAYVHPTSYVIG--DVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHG-----YPTEIGDYVTIGHNAVV   76 (154)
T ss_pred             CCCeEECCCCEEEe--eEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCC-----CCeEECCCCEECCCcEE
Confidence            45566777888887  588999999999999998766789999999999999886421     11333445555555544


Q ss_pred             E
Q psy2215         147 R  147 (172)
Q Consensus       147 ~  147 (172)
                      +
T Consensus        77 ~   77 (154)
T cd04650          77 H   77 (154)
T ss_pred             E
Confidence            4

It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.

>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.12  E-value=3.5e-10  Score=98.97  Aligned_cols=107  Identities=9%  Similarity=0.093  Sum_probs=73.6

Q ss_pred             eeccceecccCCchhhhhhccccccCC----------eeecCCeEecc----cceEECCCeEECCCcEEcCCCcceEECC
Q psy2215          44 FLSRGWWFESKSSHKILVYSGAVASGN----------KVSRKSLVAGA----QNIVLTGKVIIQCDAVLRGDLANIRTGR  109 (172)
Q Consensus        44 ~~~~g~W~D~~~p~~Ll~~~~~~~~gn----------~Is~~a~I~G~----~nI~Igg~v~I~~~avIrGdl~~V~IG~  109 (172)
                      +..+|+|.|.++|++++.++...+...          ++..++.+.|+    ++..| +++.|+++|+|++.+.+..||+
T Consensus       235 ~~~~g~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~Ig~~~~I~~~v~~s~ig~  313 (380)
T PRK05293        235 YPFKGYWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKV-KNSLVVEGCVVYGTVEHSVLFQ  313 (380)
T ss_pred             EEeCCEEEeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCCEE-ecCEECCCCEEcceecceEEcC
Confidence            456789999999999998875444321          12222333331    23344 3567888888887666778999


Q ss_pred             CCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE--ecCCCeEECCCcee
Q psy2215         110 YCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR--LKSPFAQIYSYIIA  161 (172)
Q Consensus       110 ~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~--i~~pga~IGs~v~i  161 (172)
                      +|.|+++|+|..+          .++++|.||++|.|.  |+++++.|++++.+
T Consensus       314 ~~~I~~~~~i~~s----------vi~~~~~i~~~~~i~~~ii~~~~~i~~~~~i  357 (380)
T PRK05293        314 GVQVGEGSVVKDS----------VIMPGAKIGENVVIERAIIGENAVIGDGVII  357 (380)
T ss_pred             CCEECCCCEEECC----------EEeCCCEECCCeEEeEEEECCCCEECCCCEE
Confidence            9999998888764          358899999999999  66666666666553

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=99.12  E-value=3.3e-10  Score=98.37  Aligned_cols=73  Identities=25%  Similarity=0.454  Sum_probs=47.0

Q ss_pred             eeeccceecccCCchhhhhhccccccCCe-----eecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCC
Q psy2215          43 DFLSRGWWFESKSSHKILVYSGAVASGNK-----VSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGV  117 (172)
Q Consensus        43 ~~~~~g~W~D~~~p~~Ll~~~~~~~~gn~-----Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~na  117 (172)
                      .+...|+|.|.++|+||+.++...+....     +..++.+.|  .+.|++++.| +++.|.|+   +.||++|.|+ ++
T Consensus       211 ~~~~~g~w~digt~~dl~~a~~~ll~~~~~~~~~i~~~~~i~~--~~~i~~~~~i-~~~~i~~~---~~Ig~~~~I~-~~  283 (353)
T TIGR01208       211 GSKVTGWWKDTGKPEDLLDANRLILDEVEREVQGVDDESKIRG--RVVVGEGAKI-VNSVIRGP---AVIGEDCIIE-NS  283 (353)
T ss_pred             EEEeCcEEEeCCCHHHHHHHHHHHHhhcccccCCcCCCCEEcC--CEEECCCCEE-eCCEEECC---cEECCCCEEc-Cc
Confidence            45668899999999999998888776421     233445544  3566666666 55666554   5666666654 44


Q ss_pred             EEccC
Q psy2215         118 VIRPP  122 (172)
Q Consensus       118 vI~p~  122 (172)
                      +|.+.
T Consensus       284 ~i~~~  288 (353)
T TIGR01208       284 YIGPY  288 (353)
T ss_pred             EECCC
Confidence            44443

Alternate name: dTDP-D-glucose synthase

>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

Probab=99.11  E-value=9.9e-10  Score=85.45  Aligned_cols=72  Identities=25%  Similarity=0.320  Sum_probs=56.0

Q ss_pred             CCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215          69 GNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR  147 (172)
Q Consensus        69 gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~  147 (172)
                      ...+++++.|.|  ++.||+++.|+++++|+++..++.||++|.|+++|+|.....     ....+|+++.|+.+|+|.
T Consensus         5 ~~~i~~~a~i~g--~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~-----~~~~Ig~~~~I~~~~~i~   76 (153)
T cd04645           5 SAFIAPNATVIG--DVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPG-----YPTIIGDNVTVGHGAVLH   76 (153)
T ss_pred             CeEECCCCEEEE--eEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCC-----CCeEEcCCcEECCCcEEe
Confidence            345778889998  699999999999999999888999999999999999987521     113345556665555555

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=99.03  E-value=1.6e-09  Score=95.95  Aligned_cols=110  Identities=13%  Similarity=0.125  Sum_probs=62.6

Q ss_pred             eccce--ecccCCchhhhhhccccc---------cCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCee
Q psy2215          45 LSRGW--WFESKSSHKILVYSGAVA---------SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCII  113 (172)
Q Consensus        45 ~~~g~--W~D~~~p~~Ll~~~~~~~---------~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~I  113 (172)
                      ..+++  |.|.++|+++..++.+..         .+..+...+...-...+.||.++.|+++|+|.++   +.||++|.|
T Consensus       212 ~~~~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~i~~~~~i~~~---~~ig~~~~I  288 (451)
T TIGR01173       212 QVDDSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVEIDPNVILEGK---VKIGDDVVI  288 (451)
T ss_pred             EcCChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeEEECCccEECCCCEEcCCeEEeCc---eEECCCCEE
Confidence            34565  999999999876644322         2222222222222335677888888888888765   777777777


Q ss_pred             CCCCEEccCCccCCCceE---------EeeCCCeEECCCcEEEecCCCeEECCCceeC
Q psy2215         114 SKGVVIRPPFKKFAKGFL---------VYPGSTVYLVFTASVRLKSPFAQIYSYIIAP  162 (172)
Q Consensus       114 g~navI~p~~~~~~~g~~---------~~pGd~V~IG~navI~i~~pga~IGs~v~ig  162 (172)
                      +++|+|+... . ..+..         ..+|++|.||++|.|.   +++.|+++|.++
T Consensus       289 ~~~~~i~~~~-i-~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~---~~~~i~~~~~Ig  341 (451)
T TIGR01173       289 GPGCVIKNSV-I-GSNVVIKAYSVLEGSEIGEGCDVGPFARLR---PGSVLGAGVHIG  341 (451)
T ss_pred             CCCcEEeeeE-e-cCCCEEeeecEEecccccCCcEECCeeEEC---CCCEECCCcEEc
Confidence            7777776321 0 00000         1236666666666665   444444444433

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

Probab=99.03  E-value=2e-09  Score=88.01  Aligned_cols=104  Identities=20%  Similarity=0.163  Sum_probs=81.0

Q ss_pred             ecccCCchhhhhhcccccc-------CCeeecCCeEecc-cceEECCCeEECCCcEEcCCC-cceEECCCCeeCCCCEEc
Q psy2215          50 WFESKSSHKILVYSGAVAS-------GNKVSRKSLVAGA-QNIVLTGKVIIQCDAVLRGDL-ANIRTGRYCIISKGVVIR  120 (172)
Q Consensus        50 W~D~~~p~~Ll~~~~~~~~-------gn~Is~~a~I~G~-~nI~Igg~v~I~~~avIrGdl-~~V~IG~~c~Ig~navI~  120 (172)
                      |+.+..+.+..-++.+...       +-.|...+.|.|. ..|+||.++-|+++|+|+++- .|+.||++|.||.+++||
T Consensus         9 ~~~P~i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivH   88 (176)
T COG0663           9 GLSPKIDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVH   88 (176)
T ss_pred             CCCCCCCCceEECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEE
Confidence            3444444444444444443       3345677888885 679999999999999999864 599999999999999999


Q ss_pred             cCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECCCceeCCeEE
Q psy2215         121 PPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCPLH  166 (172)
Q Consensus       121 p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~iga~i~  166 (172)
                      ..          .+||+|.||=||+|.   .||.||+++.+||...
T Consensus        89 Gc----------~Ig~~~lIGmgA~vl---dga~IG~~~iVgAgal  121 (176)
T COG0663          89 GC----------TIGDNVLIGMGATVL---DGAVIGDGSIVGAGAL  121 (176)
T ss_pred             Ee----------EECCCcEEecCceEe---CCcEECCCcEEccCCc
Confidence            83          469999999999999   7799999999777643

>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.03  E-value=1.5e-09  Score=96.72  Aligned_cols=102  Identities=16%  Similarity=0.130  Sum_probs=67.4

Q ss_pred             cceecccCCchhhhhhccccccCCee----------------ecCCeEecc-------cceEECCCeEECCCcEEcCCCc
Q psy2215          47 RGWWFESKSSHKILVYSGAVASGNKV----------------SRKSLVAGA-------QNIVLTGKVIIQCDAVLRGDLA  103 (172)
Q Consensus        47 ~g~W~D~~~p~~Ll~~~~~~~~gn~I----------------s~~a~I~G~-------~nI~Igg~v~I~~~avIrGdl~  103 (172)
                      +|+|.|.++|++++.++...+.+..-                ...+.+.+.       .+..|+.++.|+ ++.|+    
T Consensus       256 ~g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~I~-~~~i~----  330 (407)
T PRK00844        256 RGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSSPNLPPAKFVDGGGRVGSAQDSLVSAGSIIS-GATVR----  330 (407)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCccccCCCCCcccccCCCCCCceEecCCCccceEEeCEEcCCCEEC-CeeeE----
Confidence            69999999999999987776643211                011222221       133444444444 44444    


Q ss_pred             ceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE--ecCCCeEECCCceeCC
Q psy2215         104 NIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR--LKSPFAQIYSYIIAPC  163 (172)
Q Consensus       104 ~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~--i~~pga~IGs~v~iga  163 (172)
                      +..||++|.|+++|.|...          .++++|.||++|.|.  |+++++.|+++++++.
T Consensus       331 ~svIg~~~~I~~~~~i~~s----------ii~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~  382 (407)
T PRK00844        331 NSVLSPNVVVESGAEVEDS----------VLMDGVRIGRGAVVRRAILDKNVVVPPGATIGV  382 (407)
T ss_pred             cCEECCCCEECCCCEEeee----------EECCCCEECCCCEEEeeEECCCCEECCCCEECC
Confidence            3667888888887777653          369999999999999  7777777777776655

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.01  E-value=1.7e-09  Score=96.28  Aligned_cols=17  Identities=6%  Similarity=-0.216  Sum_probs=14.4

Q ss_pred             ceecccCCchhhhhhcc
Q psy2215          48 GWWFESKSSHKILVYSG   64 (172)
Q Consensus        48 g~W~D~~~p~~Ll~~~~   64 (172)
                      ++|.|.++|+||+.++.
T Consensus       224 ~~~~~I~t~~dl~~a~~  240 (446)
T PRK14353        224 DEVRGINSRAELAEAEA  240 (446)
T ss_pred             hhcccCCCHHHHHHHHH
Confidence            56999999999987764

>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=98.98  E-value=5.9e-09  Score=70.35  Aligned_cols=73  Identities=21%  Similarity=0.145  Sum_probs=58.8

Q ss_pred             EECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECCCceeCCe
Q psy2215          85 VLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCP  164 (172)
Q Consensus        85 ~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~iga~  164 (172)
                      .|++++.|+++++|.+.   +.||++|.|+++|+|++..... .-....+|++++||++|+|.   ++++||+++.+++.
T Consensus         2 ~ig~~~~i~~~~~i~~~---~~Ig~~~~I~~~~~i~~~~~~~-~~~~~~ig~~~~v~~~~~i~---~~~~ig~~~~i~~~   74 (78)
T cd00208           2 FIGEGVKIHPKAVIRGP---VVIGDNVNIGPGAVIGAATGPN-EKNPTIIGDNVEIGANAVIH---GGVKIGDNAVIGAG   74 (78)
T ss_pred             EECCCeEECCCCEEeCc---EEECCCCEECCCCEEEeccCCC-ccCCcEECCCcEECCCCEEe---CCCEECCCCEECcC
Confidence            57889999999999875   9999999999999999763211 11125569999999999999   88999999997654

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.

>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

Probab=98.97  E-value=4.9e-09  Score=81.00  Aligned_cols=76  Identities=22%  Similarity=0.152  Sum_probs=42.7

Q ss_pred             ceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccC------CCce---EEeeCCCeEECCCcEEEecCCCe
Q psy2215          83 NIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF------AKGF---LVYPGSTVYLVFTASVRLKSPFA  153 (172)
Q Consensus        83 nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~------~~g~---~~~pGd~V~IG~navI~i~~pga  153 (172)
                      ++.++.++.|+++++|..+   ++||++|.|++++.|..+...-      +...   ...+|++|+||++|+|.   +++
T Consensus        96 ~~~ig~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~---~~~  169 (197)
T cd03360          96 SAVIGEGCVIMAGAVINPD---ARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATII---QGV  169 (197)
T ss_pred             CCEECCCCEEcCCCEECCC---CEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEEc---CCC
Confidence            3555666666666666544   5555555555555554332210      0000   03347888888888877   778


Q ss_pred             EECCCceeCCe
Q psy2215         154 QIYSYIIAPCP  164 (172)
Q Consensus       154 ~IGs~v~iga~  164 (172)
                      +||+++.+++.
T Consensus       170 ~ig~~~~v~~~  180 (197)
T cd03360         170 TIGAGAIIGAG  180 (197)
T ss_pred             EECCCCEECCC
Confidence            88888775543

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.

>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

Probab=98.97  E-value=7.8e-09  Score=81.97  Aligned_cols=90  Identities=23%  Similarity=0.320  Sum_probs=60.6

Q ss_pred             cCCeeecCCeEecccceEECCCeEECCCcEEcCCC-cceEECCCCeeCCCCEEccCCc----c-----CCCc-e---EEe
Q psy2215          68 SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDL-ANIRTGRYCIISKGVVIRPPFK----K-----FAKG-F---LVY  133 (172)
Q Consensus        68 ~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl-~~V~IG~~c~Ig~navI~p~~~----~-----~~~g-~---~~~  133 (172)
                      .+..|++.+.|.+  ++.||++++|+++++|+++. .++.||++|.|++++.|+....    .     +..+ .   .+.
T Consensus         7 ~~~~I~~~a~i~~--~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~   84 (167)
T cd00710           7 PSAYVHPTAVVIG--DVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAY   84 (167)
T ss_pred             CCeEECCCCEEEe--eEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEE
Confidence            4556677777776  68888999999999888753 3688888888888888853210    0     0000 0   034


Q ss_pred             eCCCeEECCCcEEEecCCCeEECCCceeCC
Q psy2215         134 PGSTVYLVFTASVRLKSPFAQIYSYIIAPC  163 (172)
Q Consensus       134 pGd~V~IG~navI~i~~pga~IGs~v~iga  163 (172)
                      +||+|+||++|.|.    +++||+++.+|+
T Consensus        85 Ig~~~~Ig~~~~I~----~~~Ig~~~~Ig~  110 (167)
T cd00710          85 IGDNCFIGFRSVVF----NAKVGDNCVIGH  110 (167)
T ss_pred             ECCCCEECCCCEEE----CCEECCCCEEcC
Confidence            47777777777777    667777766443

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.

>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

Probab=98.96  E-value=8.1e-09  Score=74.51  Aligned_cols=76  Identities=18%  Similarity=0.201  Sum_probs=57.5

Q ss_pred             ceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCC----------ceEEeeCCCeEECCCcEEEecCCC
Q psy2215          83 NIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAK----------GFLVYPGSTVYLVFTASVRLKSPF  152 (172)
Q Consensus        83 nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~----------g~~~~pGd~V~IG~navI~i~~pg  152 (172)
                      ++.||+++.|+++++|.++ .++.||++|.|+++|+|.........          .....+|++++||+++.+.   ++
T Consensus         1 ~v~Ig~~~~I~~~~~i~~~-~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~---~~   76 (109)
T cd04647           1 NISIGDNVYIGPGCVISAG-GGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVIL---PG   76 (109)
T ss_pred             CeEECCCcEECCCCEEecC-CceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEc---CC
Confidence            4789999999999999974 46999999999999999876332211          1113458888888888887   67


Q ss_pred             eEECCCceeC
Q psy2215         153 AQIYSYIIAP  162 (172)
Q Consensus       153 a~IGs~v~ig  162 (172)
                      +.|++++.++
T Consensus        77 ~~ig~~~~i~   86 (109)
T cd04647          77 VTIGDGAVVG   86 (109)
T ss_pred             CEECCCCEEC
Confidence            7777777744

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.93  E-value=2.2e-09  Score=95.83  Aligned_cols=111  Identities=12%  Similarity=0.055  Sum_probs=65.3

Q ss_pred             eecccCCchhhhhhccccccCC---eeecCCeEecccceEECCCeEECCCcEEcCCCc---ceEECCCCeeCCCCEEccC
Q psy2215          49 WWFESKSSHKILVYSGAVASGN---KVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLA---NIRTGRYCIISKGVVIRPP  122 (172)
Q Consensus        49 ~W~D~~~p~~Ll~~~~~~~~gn---~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~---~V~IG~~c~Ig~navI~p~  122 (172)
                      .|+|+++|+||+.++.+.....   .+.....|...+++.+++++.|+++++|.++..   ++.||++|.|+++|+|...
T Consensus       226 ~~~~I~tp~dl~~a~~~l~~~~~~~~~~~~~~i~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~  305 (456)
T PRK14356        226 NLLGVNTPAELVRSEELLRARIVEKHLESGVLIHAPESVRIGPRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDA  305 (456)
T ss_pred             eEecCcCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEECCCcEECCCCEEeCCcEEeCceEECCCCEECCCeEEEee
Confidence            5899999999988776655321   122344555556677777777777777776531   4667777777766665531


Q ss_pred             -----CccCCCce--EEeeCCCeEECCCcEEEecCCCeEECCCceeC
Q psy2215         123 -----FKKFAKGF--LVYPGSTVYLVFTASVRLKSPFAQIYSYIIAP  162 (172)
Q Consensus       123 -----~~~~~~g~--~~~pGd~V~IG~navI~i~~pga~IGs~v~ig  162 (172)
                           ...-+...  ...+|++|.||+++.|.   |++.||+++.+|
T Consensus       306 ~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~---~~~~ig~~~~ig  349 (456)
T PRK14356        306 VVSSGATIHSFSHLEGAEVGDGCSVGPYARLR---PGAVLEEGARVG  349 (456)
T ss_pred             EECCCCEEeeeEEEcccceecccEECCceEEC---CCCEECCCCEec
Confidence                 10000000  01236677777777766   555555555544

>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

Probab=98.91  E-value=7.6e-09  Score=87.05  Aligned_cols=51  Identities=18%  Similarity=0.036  Sum_probs=22.7

Q ss_pred             eEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECCCce
Q psy2215         105 IRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYII  160 (172)
Q Consensus       105 V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~  160 (172)
                      +.||++|.|+++|+|++....- . -.+.+||+|.|++++.|.   .++.||+++.
T Consensus        78 v~IG~~~~Ig~~~~I~~~~~~~-~-~~~~IG~~~~I~~~~~I~---~~~~IG~~~~  128 (254)
T cd03351          78 LEIGDNNTIREFVTIHRGTAQG-G-GVTRIGNNNLLMAYVHVA---HDCVIGNNVI  128 (254)
T ss_pred             EEECCCCEECCccEEeccccCC-C-CceEECCCCEECCCCEEC---CCCEECCCcE
Confidence            4455555555555554432110 0 013445555555555553   2444444444

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.

>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others

Probab=98.90  E-value=1e-08  Score=80.44  Aligned_cols=77  Identities=18%  Similarity=0.139  Sum_probs=58.9

Q ss_pred             eEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccC-CccCCC--------------------c----eEEeeCCCe
Q psy2215          84 IVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPP-FKKFAK--------------------G----FLVYPGSTV  138 (172)
Q Consensus        84 I~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~-~~~~~~--------------------g----~~~~pGd~V  138 (172)
                      +.||.++.|+++..+.+. ..++||++|.|++++.|... .+.+..                    .    -.+.+||+|
T Consensus         2 ~~iG~~s~i~~~~~~~~~-~~i~IG~~~~I~~~v~i~~~~~H~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~   80 (145)
T cd03349           2 ISVGDYSYGSGPDCDVGG-DKLSIGKFCSIAPGVKIGLGGNHPTDWVSTYPFYIFGGEWEDDAKFDDWPSKGDVIIGNDV   80 (145)
T ss_pred             EEEeCceeeCCCCceEeC-CCeEECCCCEECCCCEECCCCCCCCCCccccceEeeccccccccccccccccCCcEECCCC
Confidence            678999999994444333 57999999999999999877 443321                    0    013449999


Q ss_pred             EECCCcEEEecCCCeEECCCceeCCe
Q psy2215         139 YLVFTASVRLKSPFAQIYSYIIAPCP  164 (172)
Q Consensus       139 ~IG~navI~i~~pga~IGs~v~iga~  164 (172)
                      +||++|+|.   ++++||+++++++.
T Consensus        81 ~Ig~~~~i~---~gv~Ig~~~vIgag  103 (145)
T cd03349          81 WIGHGATIL---PGVTIGDGAVIAAG  103 (145)
T ss_pred             EECCCCEEe---CCCEECCCCEECCC
Confidence            999999998   89999999997664

Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.

>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

Probab=98.90  E-value=1.4e-08  Score=79.55  Aligned_cols=61  Identities=18%  Similarity=0.282  Sum_probs=36.5

Q ss_pred             ecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215          73 SRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR  147 (172)
Q Consensus        73 s~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~  147 (172)
                      .+.+.+.+  .++|++++.|++++.|+++   +.||++|.|++++.|+++         ..+|+++.||+++.|.
T Consensus         9 ~~~~~i~~--~v~ig~~~~I~~~a~i~~~---v~Ig~~~~I~~~~~i~~~---------~~Ig~~~~I~~~~~i~   69 (163)
T cd05636           9 EEGVTIKG--PVWIGEGAIVRSGAYIEGP---VIIGKGCEIGPNAYIRGY---------TVLGDGCVVGNSVEVK   69 (163)
T ss_pred             CCCCEECC--CeEEcCCCEECCCCEEeCC---eEECCCCEECCCCEEcCC---------CEECCCCEECCCcEEe
Confidence            33445554  3667777777777777665   667777777666666654         2334455555544444

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=98.89  E-value=7.9e-09  Score=87.86  Aligned_cols=74  Identities=12%  Similarity=0.136  Sum_probs=48.2

Q ss_pred             CCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCcc--CCCc-eEEeeCCCeEECCCcE
Q psy2215          69 GNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKK--FAKG-FLVYPGSTVYLVFTAS  145 (172)
Q Consensus        69 gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~--~~~g-~~~~pGd~V~IG~nav  145 (172)
                      +..|.+.+.|.+  +++||+++.|+++++|.++   +.||++|.|+++|+|++....  |.+. -.+.+||+++|+++|+
T Consensus        20 ~v~Igp~~~I~~--~v~IG~~~~I~~~~~I~g~---~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~~I~e~~~   94 (262)
T PRK05289         20 NVEIGPFCVIGP--NVVIGDGTVIGSHVVIDGH---TTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIREFVT   94 (262)
T ss_pred             CCEECCCeEECC--CCEECCCCEECCCCEEcCc---cEECCCCEEcccceecCCceeecccCCCCeEEECCCCEECCCeE
Confidence            333444444432  5777777777777777776   888888888888888764322  1211 1245688888888887


Q ss_pred             EE
Q psy2215         146 VR  147 (172)
Q Consensus       146 I~  147 (172)
                      |+
T Consensus        95 I~   96 (262)
T PRK05289         95 IN   96 (262)
T ss_pred             Ee
Confidence            76

>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA

Probab=98.89  E-value=1.6e-08  Score=77.76  Aligned_cols=75  Identities=12%  Similarity=0.073  Sum_probs=51.7

Q ss_pred             ceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECCCceeC
Q psy2215          83 NIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAP  162 (172)
Q Consensus        83 nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~ig  162 (172)
                      +..|++++.|++++.|..+   ++||++|.|++++.|+...+.... ....+||+|+||++++|.   ++++||+++.++
T Consensus        31 ~~~IG~~~~I~~~~~I~~~---~~IG~~~~I~~~~~igg~~~~~~~-~~v~Ig~~~~Ig~~a~I~---~gv~Ig~~~~Ig  103 (139)
T cd03350          31 GAYVDEGTMVDSWATVGSC---AQIGKNVHLSAGAVIGGVLEPLQA-TPVIIEDDVFIGANCEVV---EGVIVGKGAVLA  103 (139)
T ss_pred             CCEECCCeEEcCCCEECCC---CEECCCCEECCCCEECCccccccc-CCeEECCCCEECCCCEEC---CCCEECCCCEEc
Confidence            4567777777777777655   788888888888888754221111 124568888888888887   788888888854


Q ss_pred             Ce
Q psy2215         163 CP  164 (172)
Q Consensus       163 a~  164 (172)
                      +.
T Consensus       104 ~g  105 (139)
T cd03350         104 AG  105 (139)
T ss_pred             CC
Confidence            43

It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.

>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit

Probab=98.89  E-value=6.8e-09  Score=90.65  Aligned_cols=108  Identities=9%  Similarity=0.061  Sum_probs=64.7

Q ss_pred             eeeccceecccCCchhhhhhccccccCCeee-----cC----CeEecccceEEC-----CCeEECCCcEEcCCCcceEEC
Q psy2215          43 DFLSRGWWFESKSSHKILVYSGAVASGNKVS-----RK----SLVAGAQNIVLT-----GKVIIQCDAVLRGDLANIRTG  108 (172)
Q Consensus        43 ~~~~~g~W~D~~~p~~Ll~~~~~~~~gn~Is-----~~----a~I~G~~nI~Ig-----g~v~I~~~avIrGdl~~V~IG  108 (172)
                      .+...|+|+|+++|++|+.++...+.+....     ..    ..+.-...+.|+     ++++|+++|+|.+.+.+..||
T Consensus       229 ~~~~~g~w~dIgt~~~l~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~i~~~~Ig~~~~i~~~v~~s~i~  308 (369)
T TIGR02092       229 AYEYTGYLANINSVKSYYKANMDLLDPQNFQSLFYSSQGPIYTKVKDEPPTYYAENSKVENSLVANGCIIEGKVENSILS  308 (369)
T ss_pred             EEecCCceeEcCCHHHHHHHHHHHhCCcchhhhcCCCCCceeeccCCCCCcEEcCCCEEEEeEEcCCCEEeeEEeCCEEC
Confidence            3456799999999999999885544332110     00    000001123333     355677777776443445677


Q ss_pred             CCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE--ecCCCeEECCCce
Q psy2215         109 RYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR--LKSPFAQIYSYII  160 (172)
Q Consensus       109 ~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~--i~~pga~IGs~v~  160 (172)
                      ++|.|+++|.|...          ..++++.|++++.+.  |++++++|++++.
T Consensus       309 ~~~~I~~~~~i~~s----------ii~~~~~I~~~~~i~~~ii~~~~~v~~~~~  352 (369)
T TIGR02092       309 RGVHVGKDALIKNC----------IIMQRTVIGEGAHLENVIIDKDVVIEPNVK  352 (369)
T ss_pred             CCCEECCCCEEEee----------EEeCCCEECCCCEEEEEEECCCCEECCCCE
Confidence            77777777777543          358889999999998  4444444444444

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.

>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

Probab=98.88  E-value=2.4e-08  Score=79.20  Aligned_cols=62  Identities=21%  Similarity=0.223  Sum_probs=38.4

Q ss_pred             eEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECCCceeC
Q psy2215          84 IVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAP  162 (172)
Q Consensus        84 I~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~ig  162 (172)
                      +.||+++.|.+++.|.++   +.||++|.||.+|.|..          ..+|++|+||++|.|.    ++.|+++..++
T Consensus        65 v~Ig~~~~I~~~~~i~g~---~~Ig~~~~Ig~~~~I~~----------~~Ig~~~~Ig~~s~i~----~~~i~~~~~v~  126 (167)
T cd00710          65 VWIGKNVSIAHGAIVHGP---AYIGDNCFIGFRSVVFN----------AKVGDNCVIGHNAVVD----GVEIPPGRYVP  126 (167)
T ss_pred             EEECCCceECCCCEEeCC---EEECCCCEECCCCEEEC----------CEECCCCEEcCCCEEe----CCEeCCCCEEC
Confidence            334444444444444433   55666666666665542          3569999999999998    66777776643

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.

>PLN02296 carbonate dehydratase

Probab=98.86  E-value=1.8e-08  Score=86.84  Aligned_cols=84  Identities=11%  Similarity=0.128  Sum_probs=67.1

Q ss_pred             ccCCeeecCCeEecc-cceEECCCeEECCCcEEcCC-------CcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCe
Q psy2215          67 ASGNKVSRKSLVAGA-QNIVLTGKVIIQCDAVLRGD-------LANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTV  138 (172)
Q Consensus        67 ~~gn~Is~~a~I~G~-~nI~Igg~v~I~~~avIrGd-------l~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V  138 (172)
                      ..+..|...+.|.|. .++.||.++.|+++|+|..+       ..+..||++|.|+++|+|+.          ..+||+|
T Consensus        74 G~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g----------~~Igd~v  143 (269)
T PLN02296         74 GRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHG----------CTVEDEA  143 (269)
T ss_pred             CCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecC----------CEECCCc
Confidence            345556677888875 47899999999999999732       24689999999999999865          3368999


Q ss_pred             EECCCcEEEecCCCeEECCCceeCC
Q psy2215         139 YLVFTASVRLKSPFAQIYSYIIAPC  163 (172)
Q Consensus       139 ~IG~navI~i~~pga~IGs~v~iga  163 (172)
                      +||.+|+|.   ++++|++++.+++
T Consensus       144 ~IG~ga~I~---~gv~Ig~~a~Iga  165 (269)
T PLN02296        144 FVGMGATLL---DGVVVEKHAMVAA  165 (269)
T ss_pred             EECCCcEEC---CCeEECCCCEECC
Confidence            999999988   8888888888543

>PLN02472 uncharacterized protein

Probab=98.86  E-value=2e-08  Score=85.57  Aligned_cols=84  Identities=15%  Similarity=0.103  Sum_probs=66.2

Q ss_pred             cCCeeecCCeEecc-cceEECCCeEECCCcEEcCCC-------cceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeE
Q psy2215          68 SGNKVSRKSLVAGA-QNIVLTGKVIIQCDAVLRGDL-------ANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVY  139 (172)
Q Consensus        68 ~gn~Is~~a~I~G~-~nI~Igg~v~I~~~avIrGdl-------~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~  139 (172)
                      .+..|...+.|.|. ..|.||+++.|+++|+|..+.       .++.||++|.||++|+|+.          ..+||+|.
T Consensus        82 ~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~----------~~Igd~v~  151 (246)
T PLN02472         82 DGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRS----------CTIEPECI  151 (246)
T ss_pred             CCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECC----------eEEcCCCE
Confidence            34445566777774 569999999999999997532       3689999999999999974          45699999


Q ss_pred             ECCCcEEEecCCCeEECCCceeCCe
Q psy2215         140 LVFTASVRLKSPFAQIYSYIIAPCP  164 (172)
Q Consensus       140 IG~navI~i~~pga~IGs~v~iga~  164 (172)
                      ||.+|+|.   +++.||+++.+++.
T Consensus       152 IG~~svI~---~gavIg~~~~Ig~g  173 (246)
T PLN02472        152 IGQHSILM---EGSLVETHSILEAG  173 (246)
T ss_pred             ECCCCEEC---CCCEECCCCEECCC
Confidence            99999888   78888888875543

>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=98.86  E-value=2.6e-08  Score=78.52  Aligned_cols=54  Identities=15%  Similarity=0.346  Sum_probs=44.2

Q ss_pred             cCCeeecCCeEecc-cceEECCCeEECCCcEEcCCC---------cceEECCCCeeCCCCEEcc
Q psy2215          68 SGNKVSRKSLVAGA-QNIVLTGKVIIQCDAVLRGDL---------ANIRTGRYCIISKGVVIRP  121 (172)
Q Consensus        68 ~gn~Is~~a~I~G~-~nI~Igg~v~I~~~avIrGdl---------~~V~IG~~c~Ig~navI~p  121 (172)
                      ..-.+.+.+.|.|. .++.||+++.|+++|+|++..         .+++||++|.|+++++|..
T Consensus        26 ~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~   89 (161)
T cd03359          26 GKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNA   89 (161)
T ss_pred             CceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEe
Confidence            33446778888874 468999999999999999753         3789999999999999875

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>TIGR02091 glgC glucose-1-phosphate adenylyltransferase

Probab=98.85  E-value=2.2e-08  Score=86.88  Aligned_cols=105  Identities=14%  Similarity=0.106  Sum_probs=61.0

Q ss_pred             eeccceecccCCchhhhhhccccccCC----eeecCCeEecc-----cceEEC-----CCeEECCCcEEcC-CCcceEEC
Q psy2215          44 FLSRGWWFESKSSHKILVYSGAVASGN----KVSRKSLVAGA-----QNIVLT-----GKVIIQCDAVLRG-DLANIRTG  108 (172)
Q Consensus        44 ~~~~g~W~D~~~p~~Ll~~~~~~~~gn----~Is~~a~I~G~-----~nI~Ig-----g~v~I~~~avIrG-dl~~V~IG  108 (172)
                      +...+.|.|+++|++++.++...+...    ....+..+.+.     ..+.++     +++.|+++|+|.+ .+....||
T Consensus       235 ~~~~~~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~I~~~~v~~s~i~  314 (361)
T TIGR02091       235 YLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQVVDSLVSEGCIISGATVSHSVLG  314 (361)
T ss_pred             EeeCCEEEECCCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEecCCCEEECCEECCCCEECCCEEEccEEC
Confidence            445689999999999888765554321    11111111110     112222     2355666666654 12235666


Q ss_pred             CCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECCCceeC
Q psy2215         109 RYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAP  162 (172)
Q Consensus       109 ~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~ig  162 (172)
                      ++|.|+++|+|..          ...++++.||++|.|+    ++.||+++.++
T Consensus       315 ~~~~I~~~~~i~~----------sii~~~~~v~~~~~l~----~~ivg~~~~i~  354 (361)
T TIGR02091       315 IRVRIGSGSTVED----------SVIMGDVGIGRGAVIR----NAIIDKNVRIG  354 (361)
T ss_pred             CCCEECCCCEEee----------eEEeCCCEECCCCEEe----eeEECCCCEEC
Confidence            7777777776654          2358888888888888    66666665543

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.

>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

Probab=98.85  E-value=2.9e-08  Score=83.58  Aligned_cols=53  Identities=19%  Similarity=0.203  Sum_probs=33.1

Q ss_pred             cCCeeecCCeEecccceEECCCeEECCCcEEcCC---------CcceEECCCCeeCCCCEEccC
Q psy2215          68 SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGD---------LANIRTGRYCIISKGVVIRPP  122 (172)
Q Consensus        68 ~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGd---------l~~V~IG~~c~Ig~navI~p~  122 (172)
                      ++..|.+.+.|.|  ++.||+++.|+++++|+++         ..++.||++|.|+++|+|+..
T Consensus        33 ~~~~I~~~~~I~~--~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~   94 (254)
T TIGR01852        33 DGVELKSHVVILG--HTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRG   94 (254)
T ss_pred             CCCEECCCCEEee--eEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCc
Confidence            3444455555555  4677777777777777632         125777777777777777654

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).

>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional

Probab=98.84  E-value=3e-08  Score=80.64  Aligned_cols=82  Identities=18%  Similarity=0.205  Sum_probs=61.7

Q ss_pred             cccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCc-------cCC--------Cc---eEEeeCCCeEEC
Q psy2215          80 GAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFK-------KFA--------KG---FLVYPGSTVYLV  141 (172)
Q Consensus        80 G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~-------~~~--------~g---~~~~pGd~V~IG  141 (172)
                      ....+.||+++.|++++.|.. ..++.||++|.|++++.|....+       .+.        +.   -.+.+||+|+||
T Consensus        62 ~~~~i~IG~~v~Ig~~v~I~~-~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~ig  140 (192)
T PRK09677         62 GRGKLFFGDNVQVNDYVHIAC-IESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPDMRTLESSAVVIGQRVWIG  140 (192)
T ss_pred             CCCeEEECCCCEECCCcEEcc-CceEEECCCCEECCCeEEECCCCccccccccccccccChhhcccccCCeEEcCCcEEC
Confidence            345688888899988888873 24699999999999999986432       110        00   124569999999


Q ss_pred             CCcEEEecCCCeEECCCceeCCeE
Q psy2215         142 FTASVRLKSPFAQIYSYIIAPCPL  165 (172)
Q Consensus       142 ~navI~i~~pga~IGs~v~iga~i  165 (172)
                      ++++|.   ++++||+++.+++..
T Consensus       141 ~~~~i~---~g~~Ig~~~~Iga~s  161 (192)
T PRK09677        141 ENVTIL---PGVSIGNGCIVGANS  161 (192)
T ss_pred             CCCEEc---CCCEECCCCEECCCC
Confidence            999999   899999999966543

>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.84  E-value=1.3e-08  Score=90.04  Aligned_cols=62  Identities=10%  Similarity=0.054  Sum_probs=40.2

Q ss_pred             ceecccCCchhhhhhcccccc-----------------CCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCC
Q psy2215          48 GWWFESKSSHKILVYSGAVAS-----------------GNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRY  110 (172)
Q Consensus        48 g~W~D~~~p~~Ll~~~~~~~~-----------------gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~  110 (172)
                      +.|+|+++|+||+.++.+...                 +..+..++.|.|  .+.||.++.|+++|+|+ +   +.||++
T Consensus       215 ~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g--~~~ig~~~~I~~~~~i~-~---~~i~~~  288 (430)
T PRK14359        215 ENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEG--ECELEEGVRILGKSKIE-N---SHIKAH  288 (430)
T ss_pred             CEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcC--ceEECCCCEECCCeEEE-e---eEECCC
Confidence            689999999998877654332                 112344556666  46777777777777666 4   555655


Q ss_pred             CeeCC
Q psy2215         111 CIISK  115 (172)
Q Consensus       111 c~Ig~  115 (172)
                      |.|++
T Consensus       289 ~~I~~  293 (430)
T PRK14359        289 SVIEE  293 (430)
T ss_pred             CEEec
Confidence            55533

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.83  E-value=2.5e-08  Score=90.46  Aligned_cols=73  Identities=8%  Similarity=0.109  Sum_probs=42.7

Q ss_pred             eeccceecccCCchhh------hhhcc-----ccccCCeeec-CCeEecccceEECCCeEECCCcEEcCCCcceEECCCC
Q psy2215          44 FLSRGWWFESKSSHKI------LVYSG-----AVASGNKVSR-KSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYC  111 (172)
Q Consensus        44 ~~~~g~W~D~~~p~~L------l~~~~-----~~~~gn~Is~-~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c  111 (172)
                      +..+|+|.|.+.|+++      +.++.     ....|..+.. +..+.. .++.|+.++.|+++++|.++   +.||++|
T Consensus       221 ~~~~g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~-~~v~ig~~~~I~~~~~i~~~---v~Ig~~~  296 (482)
T PRK14352        221 HHADDSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVDPATTWID-VDVTIGRDVVIHPGTQLLGR---TTIGEDA  296 (482)
T ss_pred             EecCCcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCeEEEe-CCEEECCCcEEeCCcEEeec---CEECCCC
Confidence            4578999999999886      33332     2223322211 111111 25667777777777777665   6666666


Q ss_pred             eeCCCCEEc
Q psy2215         112 IISKGVVIR  120 (172)
Q Consensus       112 ~Ig~navI~  120 (172)
                      .|+++|+|.
T Consensus       297 ~I~~~~~i~  305 (482)
T PRK14352        297 VVGPDTTLT  305 (482)
T ss_pred             EECCCCEEe
Confidence            666666654

>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

Probab=98.82  E-value=2.4e-08  Score=79.13  Aligned_cols=81  Identities=19%  Similarity=0.146  Sum_probs=66.1

Q ss_pred             cccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccC-----CCc-----eEEeeCCCeEECCCcEEEec
Q psy2215          80 GAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF-----AKG-----FLVYPGSTVYLVFTASVRLK  149 (172)
Q Consensus        80 G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~-----~~g-----~~~~pGd~V~IG~navI~i~  149 (172)
                      |..++.+|.++.++.++.+. +...++||+++.+++++.|.+..+..     ..+     -++.+|++||||++++|.  
T Consensus        64 ~~~~~~iG~~~~i~~~~~~~-~~~~i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~Il--  140 (190)
T COG0110          64 GEKNLTIGDLCFIGVNVVIL-VGEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVIL--  140 (190)
T ss_pred             CCcceEECCeeEEcCCcEEE-ecCCeEECCCceECCCcEEecCCCCCChhhcccCCceecCCeEECCCeEEcCccEEC--
Confidence            44789999999999999975 34579999999999999999754432     111     125569999999999999  


Q ss_pred             CCCeEECCCceeCCe
Q psy2215         150 SPFAQIYSYIIAPCP  164 (172)
Q Consensus       150 ~pga~IGs~v~iga~  164 (172)
                       ||++||+++++|+.
T Consensus       141 -pGV~IG~gavigag  154 (190)
T COG0110         141 -PGVTIGEGAVIGAG  154 (190)
T ss_pred             -CCEEECCCcEEeeC
Confidence             99999999997764

>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.81  E-value=2.1e-08  Score=90.16  Aligned_cols=107  Identities=7%  Similarity=-0.047  Sum_probs=63.6

Q ss_pred             cceecccCCchhhhhhccccccCC----------------eeecCCeEec-ccceE-ECCCeEECCCcEEcCC-CcceEE
Q psy2215          47 RGWWFESKSSHKILVYSGAVASGN----------------KVSRKSLVAG-AQNIV-LTGKVIIQCDAVLRGD-LANIRT  107 (172)
Q Consensus        47 ~g~W~D~~~p~~Ll~~~~~~~~gn----------------~Is~~a~I~G-~~nI~-Igg~v~I~~~avIrGd-l~~V~I  107 (172)
                      +|+|.|+++|++++.++...+...                +..+.+.+.. .+++. +..++.|+++|+|.+- +.+..|
T Consensus       267 ~gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t~~~~~~~~~~~~~~~~~~~~~~~s~i~~~~~i~~~~i~~svi  346 (425)
T PRK00725        267 EPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQEQLPPAKFVFDRSGRRGMAINSLVSGGCIISGAVVRRSVL  346 (425)
T ss_pred             CCeEEECCCHHHHHHHHHHHcCCCchhhccCCCCccccCCCCCCCCeEeccCCCCcceEEeCEEcCCcEEcCccccCCEE
Confidence            379999999999988876654321                1111122211 00100 1124555666655320 123667


Q ss_pred             CCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE--ecCCCeEECCCceeCC
Q psy2215         108 GRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR--LKSPFAQIYSYIIAPC  163 (172)
Q Consensus       108 G~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~--i~~pga~IGs~v~iga  163 (172)
                      |++|.|+++|.|...          .++++|.||++|.|.  |+++++.|+++++++.
T Consensus       347 ~~~~~I~~~~~i~~s----------vi~~~~~I~~~~~i~~~ii~~~~~i~~~~~i~~  394 (425)
T PRK00725        347 FSRVRVNSFSNVEDS----------VLLPDVNVGRSCRLRRCVIDRGCVIPEGMVIGE  394 (425)
T ss_pred             CCCCEECCCCEEeee----------EEcCCCEECCCCEEeeEEECCCCEECCCCEECC
Confidence            777777777777543          358899999999999  6666666666655543

>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

Probab=98.81  E-value=5.1e-08  Score=71.64  Aligned_cols=86  Identities=13%  Similarity=0.098  Sum_probs=59.6

Q ss_pred             eeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCC------ceEEeeCCCeEECCCc
Q psy2215          71 KVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAK------GFLVYPGSTVYLVFTA  144 (172)
Q Consensus        71 ~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~------g~~~~pGd~V~IG~na  144 (172)
                      .|.+.+.|.+  +..|++++.|++++.|..+   +.||++|.|++++.|.........      --...+|++++||+++
T Consensus         6 ~I~~~~~i~~--~~~Ig~~~~I~~~~~i~~~---~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~   80 (119)
T cd03358           6 IIGTNVFIEN--DVKIGDNVKIQSNVSIYEG---VTIEDDVFIGPNVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANA   80 (119)
T ss_pred             EECCCcEECC--CcEECCCcEECCCcEEeCC---eEECCCcEEcCCeEEecCCCCccccccccccCCcEECCCcEECcCC
Confidence            4455555554  4677778888888877654   889999999998888743211000      0013569999999999


Q ss_pred             EEEecCCCeEECCCceeCCe
Q psy2215         145 SVRLKSPFAQIYSYIIAPCP  164 (172)
Q Consensus       145 vI~i~~pga~IGs~v~iga~  164 (172)
                      ++.   +++.|++++.+++.
T Consensus        81 ~v~---~~~~ig~~~~i~~~   97 (119)
T cd03358          81 TIL---PGVTIGEYALVGAG   97 (119)
T ss_pred             EEe---CCcEECCCCEEccC
Confidence            998   77888888886543

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.

>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]

Probab=98.80  E-value=2.2e-08  Score=88.91  Aligned_cols=41  Identities=22%  Similarity=0.160  Sum_probs=21.0

Q ss_pred             cccceeecccccceeeeecCCCCcee--------eeccceecccCCchh
Q psy2215          18 SSGQRCLLANTNRRVWVQSQPSGAVD--------FLSRGWWFESKSSHK   58 (172)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~g~W~D~~~p~~   58 (172)
                      ..+|-+.++|...+.-..+---+|+.        .+....++-+..|.-
T Consensus        35 ~~~~i~f~~~~ky~~~l~~s~Agaviv~~~~~~~~~~~~~~Lv~~~P~~   83 (338)
T COG1044          35 QPGDISFLANPKYRKELKTSRAGAVIVSAKDAAFAPAKKNALVVKDPYL   83 (338)
T ss_pred             CcccceeecChhhhhhcccCcccEEEecHHHHhcccCCceEEEeCCchH
Confidence            34566666665444433333333332        234555666666775

>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

Probab=98.80  E-value=3.9e-08  Score=75.92  Aligned_cols=68  Identities=13%  Similarity=-0.005  Sum_probs=33.3

Q ss_pred             eEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECCCce
Q psy2215          84 IVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYII  160 (172)
Q Consensus        84 I~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~  160 (172)
                      ..+.+++.++++++|...   +.|++++.||++|+|.+.......   ..+|++++|+++|++.   .+++||+++.
T Consensus        91 ~~i~~~~~ig~~~~i~~~---~~i~~~~~ig~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~---~~~~ig~~~~  158 (197)
T cd03360          91 AVVSPSAVIGEGCVIMAG---AVINPDARIGDNVIINTGAVIGHD---CVIGDFVHIAPGVVLS---GGVTIGEGAF  158 (197)
T ss_pred             eEECCCCEECCCCEEcCC---CEECCCCEECCCeEECCCCEECCC---CEECCCCEECCCCEEc---CCcEECCCCE
Confidence            345555555555555443   555666666666666544321000   1235555555555554   3455555544

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.

>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition

Probab=98.79  E-value=6.9e-08  Score=75.92  Aligned_cols=85  Identities=18%  Similarity=0.176  Sum_probs=67.3

Q ss_pred             cccCCeeecCCeEecc-cceEECCCeEECCCcEEcCCC-cceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCC
Q psy2215          66 VASGNKVSRKSLVAGA-QNIVLTGKVIIQCDAVLRGDL-ANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFT  143 (172)
Q Consensus        66 ~~~gn~Is~~a~I~G~-~nI~Igg~v~I~~~avIrGdl-~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~n  143 (172)
                      ...+..|...+.|.+. .++.|++++.|+++|.|+++. .++.||++|.|++++.|..          ..+|++|+||++
T Consensus        21 iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~----------~~Ig~~~~Ig~~   90 (154)
T cd04650          21 IGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHG----------AKVGNYVIVGMG   90 (154)
T ss_pred             ECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEEC----------cEECCCCEEcCC
Confidence            3456667778888874 569999999999999998653 3689999999999998864          346888888888


Q ss_pred             cEEEecCCCeEECCCceeCC
Q psy2215         144 ASVRLKSPFAQIYSYIIAPC  163 (172)
Q Consensus       144 avI~i~~pga~IGs~v~iga  163 (172)
                      +++.   +++.||+++.+++
T Consensus        91 ~~i~---~~~~Ig~~~~vg~  107 (154)
T cd04650          91 AILL---NGAKIGDHVIIGA  107 (154)
T ss_pred             CEEe---CCCEECCCCEECC
Confidence            8887   6777888777554

It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=98.78  E-value=5.5e-08  Score=76.38  Aligned_cols=84  Identities=21%  Similarity=0.253  Sum_probs=47.0

Q ss_pred             eecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccC-----CCce----EEeeCCCeEECC
Q psy2215          72 VSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF-----AKGF----LVYPGSTVYLVF  142 (172)
Q Consensus        72 Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~-----~~g~----~~~pGd~V~IG~  142 (172)
                      +++.+.+.  .++.|+.++.|+++++|..+   +.||++|.|++++.|......-     ..+.    ...+|++++||+
T Consensus        90 i~~~a~i~--~~~~ig~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~  164 (201)
T TIGR03570        90 IHPSAIVS--PSASIGEGTVIMAGAVINPD---VRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGA  164 (201)
T ss_pred             ecCCeEEC--CCCEECCCCEECCCCEECCC---CEECCCcEECCCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEECC
Confidence            34444443  25666777777777766654   5555555555555554322110     0000    023478888888


Q ss_pred             CcEEEecCCCeEECCCceeCC
Q psy2215         143 TASVRLKSPFAQIYSYIIAPC  163 (172)
Q Consensus       143 navI~i~~pga~IGs~v~iga  163 (172)
                      +|+|.   +++.||+++.+++
T Consensus       165 ~~~v~---~~~~i~~~~~i~~  182 (201)
T TIGR03570       165 GATII---QGVTIGAGAIVGA  182 (201)
T ss_pred             CCEEe---CCCEECCCCEECC
Confidence            88887   6777777777554

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=98.77  E-value=4.8e-08  Score=84.54  Aligned_cols=29  Identities=0%  Similarity=-0.106  Sum_probs=24.5

Q ss_pred             EeeCCCeEECCCcEEEecCCCeEECCCceeCC
Q psy2215         132 VYPGSTVYLVFTASVRLKSPFAQIYSYIIAPC  163 (172)
Q Consensus       132 ~~pGd~V~IG~navI~i~~pga~IGs~v~iga  163 (172)
                      +.+||+|+||++|+|.   ++++||+++++|+
T Consensus       174 ViIgDnv~IGa~a~I~---~GV~IG~gavIGa  202 (269)
T TIGR00965       174 TIIEDNCFIGARSEIV---EGVIVEEGSVISM  202 (269)
T ss_pred             eEECCCCEECCCCEEc---CCCEECCCCEEeC
Confidence            5679999999999999   8888888888444

The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).

>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase

Probab=98.76  E-value=3.8e-08  Score=82.77  Aligned_cols=35  Identities=26%  Similarity=0.404  Sum_probs=21.8

Q ss_pred             ceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEc
Q psy2215          83 NIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIR  120 (172)
Q Consensus        83 nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~  120 (172)
                      +..||.++.|++++.|.++   +.||++|.|+++++|.
T Consensus       116 ~~~IG~~~~I~~~a~I~~~---s~Ig~~~~Ig~~~~I~  150 (231)
T TIGR03532       116 GAEIGEGTMIDMNAVLGGR---ATVGKNVHIGAGAVLA  150 (231)
T ss_pred             CeEECCCCEEccccccCCC---cEECCCcEEcCCcEEc
Confidence            4566666666666666554   6666666666666665

Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.

>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=98.76  E-value=4.1e-08  Score=83.50  Aligned_cols=63  Identities=21%  Similarity=0.169  Sum_probs=48.3

Q ss_pred             eeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215          71 KVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR  147 (172)
Q Consensus        71 ~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~  147 (172)
                      +|++.|.|..  +..|++++.|+++|+|.++   +.||++|.|+++++|.++         +.+|++|.|+++|+|.
T Consensus         4 ~I~p~a~I~~--~a~Ig~~v~Igp~~~I~~~---v~IG~~~~I~~~~~I~g~---------~~IG~~~~I~~~a~Ig   66 (262)
T PRK05289          4 KIHPTAIVEP--GAKIGENVEIGPFCVIGPN---VVIGDGTVIGSHVVIDGH---------TTIGKNNRIFPFASIG   66 (262)
T ss_pred             ccCCCCEECC--CCEECCCCEECCCeEECCC---CEECCCCEECCCCEEcCc---------cEECCCCEEcccceec
Confidence            4566666654  5788889999999998876   888888888888888876         4457777777777764

>TIGR02287 PaaY phenylacetic acid degradation protein PaaY

Probab=98.75  E-value=4.1e-08  Score=80.57  Aligned_cols=67  Identities=16%  Similarity=0.200  Sum_probs=50.0

Q ss_pred             EECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE-------ecCCCeEECC
Q psy2215          85 VLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR-------LKSPFAQIYS  157 (172)
Q Consensus        85 ~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~-------i~~pga~IGs  157 (172)
                      .|+++++|+++++|.|+   +.||++|.|+++|+|+.+.-      ++.+|+++.||++|+|+       +++++++|++
T Consensus        10 ~i~~~~~I~~~a~I~G~---V~IG~~~~I~~~a~I~gd~g------~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~   80 (192)
T TIGR02287        10 VVHPEAYVHPTAVLIGD---VILGKRCYVGPLASLRGDFG------RIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGH   80 (192)
T ss_pred             cCCCCcEECCCCEEEee---EEECCCCEECCCcEEEccCC------ceEECCCCEECCCeEEeccCCCCCeECCCCEECC
Confidence            35788888888888887   88999999999999887521      15668888888888883       5555555555


Q ss_pred             Cce
Q psy2215         158 YII  160 (172)
Q Consensus       158 ~v~  160 (172)
                      ++.
T Consensus        81 ~a~   83 (192)
T TIGR02287        81 GAI   83 (192)
T ss_pred             CCE
Confidence            544

Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.

>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

Probab=98.74  E-value=1.3e-07  Score=73.97  Aligned_cols=84  Identities=17%  Similarity=0.133  Sum_probs=60.8

Q ss_pred             ccCCeeecCCeEecc-cceEECCCeEECCCcEEcCCC-cceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCc
Q psy2215          67 ASGNKVSRKSLVAGA-QNIVLTGKVIIQCDAVLRGDL-ANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTA  144 (172)
Q Consensus        67 ~~gn~Is~~a~I~G~-~nI~Igg~v~I~~~avIrGdl-~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~na  144 (172)
                      ..+..|...+.|.+. .++.||.++.|+++|+|++.. .++.||++|.|+++++|..          ..+|++++||++|
T Consensus        22 G~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~----------~~Ig~~~~Ig~~~   91 (155)
T cd04745          22 GKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHG----------CTIGRNALVGMNA   91 (155)
T ss_pred             CCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEEC----------CEECCCCEECCCC
Confidence            345555566777653 358899999999999996421 2578888888888887764          3458888888888


Q ss_pred             EEEecCCCeEECCCceeCC
Q psy2215         145 SVRLKSPFAQIYSYIIAPC  163 (172)
Q Consensus       145 vI~i~~pga~IGs~v~iga  163 (172)
                      +|.   +++.||+++.+++
T Consensus        92 ~I~---~g~~Ig~~~~Ig~  107 (155)
T cd04745          92 VVM---DGAVIGEESIVGA  107 (155)
T ss_pred             EEe---CCCEECCCCEECC
Confidence            888   6677777777554

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.

>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.74  E-value=4.8e-08  Score=87.95  Aligned_cols=114  Identities=12%  Similarity=0.118  Sum_probs=66.5

Q ss_pred             eeeccceecccCCchhhhhhccccccC-----CeeecCCeEe------------cc--cceEECCCeEECCCcEEcCCCc
Q psy2215          43 DFLSRGWWFESKSSHKILVYSGAVASG-----NKVSRKSLVA------------GA--QNIVLTGKVIIQCDAVLRGDLA  103 (172)
Q Consensus        43 ~~~~~g~W~D~~~p~~Ll~~~~~~~~g-----n~Is~~a~I~------------G~--~nI~Igg~v~I~~~avIrGdl~  103 (172)
                      -+...|+|.|+++|+++++++...+..     ....++..++            +.  .+..|+.++.| +++.|+    
T Consensus       249 ~~~~~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~ig~~~~i-~~~~i~----  323 (429)
T PRK02862        249 SYLFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKLLDATITESIIAEGCII-KNCSIH----  323 (429)
T ss_pred             EEEeCCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceeccCCCCCCccccccEEEeCEECCCCEE-CCcEEE----
Confidence            345689999999999999887554411     0011112222            11  12344555555 444443    


Q ss_pred             ceEECCCCeeCCCCEEccCCcc-------CCCceEE--eeCCCeEECCCcEEE--ecCCCeEECCCcee
Q psy2215         104 NIRTGRYCIISKGVVIRPPFKK-------FAKGFLV--YPGSTVYLVFTASVR--LKSPFAQIYSYIIA  161 (172)
Q Consensus       104 ~V~IG~~c~Ig~navI~p~~~~-------~~~g~~~--~pGd~V~IG~navI~--i~~pga~IGs~v~i  161 (172)
                      +..||++|.||++|+|..+.-.       -+++...  ....++.||++|+|.  |+++++.||+++.+
T Consensus       324 ~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i~~~~~~  392 (429)
T PRK02862        324 HSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVRI  392 (429)
T ss_pred             EEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcEECCCcEE
Confidence            4688899999888887654110       0000000  113478899999999  67777777777664

>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=98.74  E-value=8e-08  Score=81.90  Aligned_cols=73  Identities=16%  Similarity=0.206  Sum_probs=45.4

Q ss_pred             CeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccC--CCc-eEEeeCCCeEECCCcEE
Q psy2215          70 NKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF--AKG-FLVYPGSTVYLVFTASV  146 (172)
Q Consensus        70 n~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~--~~g-~~~~pGd~V~IG~navI  146 (172)
                      ..|.+.+.|.+  +++||+++.|+++++|+++   +.||++|.|+++++|++....+  ... -.+.+||+++|+++++|
T Consensus        18 v~Igp~~~I~~--~v~IG~~~~I~~~~~I~~~---~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~~I~e~vtI   92 (255)
T PRK12461         18 VEIGPFAVIGA--NVEIGDGTWIGPHAVILGP---TRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRNVIREGVTI   92 (255)
T ss_pred             CEECCCCEECC--CCEECCCcEEccCCEEeCC---CEECCCCEEccCcEeCCCCccccccCccceeEECCceEECCccEE
Confidence            33444444433  5777777777777777766   7788888888888887543322  111 12455777777777777


Q ss_pred             E
Q psy2215         147 R  147 (172)
Q Consensus       147 ~  147 (172)
                      +
T Consensus        93 ~   93 (255)
T PRK12461         93 H   93 (255)
T ss_pred             e
Confidence            5

>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

Probab=98.74  E-value=4.6e-08  Score=82.31  Aligned_cols=92  Identities=10%  Similarity=0.048  Sum_probs=66.4

Q ss_pred             cCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccC--CCc-eEEeeCCCeEECCCc
Q psy2215          68 SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF--AKG-FLVYPGSTVYLVFTA  144 (172)
Q Consensus        68 ~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~--~~g-~~~~pGd~V~IG~na  144 (172)
                      ++.+|.+.+.|.+  ++.||+++.|+++|+|.++   +.||++|.|+++++|++....+  .+. -.+.+|++|+|+++|
T Consensus        16 ~~~~I~p~~~I~~--~v~IG~~~~I~~~~~I~~~---v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~   90 (254)
T cd03351          16 ENVEIGPFCVIGP--NVEIGDGTVIGSHVVIDGP---TTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFV   90 (254)
T ss_pred             CCCEECCCcEECC--CCEECCCCEECCCcEEeCC---eEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCcc
Confidence            4555555665544  7888999999999999887   9999999999999998643211  111 125679999999999


Q ss_pred             EEE--ecC--CCeEECCCceeCCe
Q psy2215         145 SVR--LKS--PFAQIYSYIIAPCP  164 (172)
Q Consensus       145 vI~--i~~--pga~IGs~v~iga~  164 (172)
                      +|.  ...  ..++||+++.+++.
T Consensus        91 ~I~~~~~~~~~~~~IG~~~~I~~~  114 (254)
T cd03351          91 TIHRGTAQGGGVTRIGNNNLLMAY  114 (254)
T ss_pred             EEeccccCCCCceEECCCCEECCC
Confidence            998  111  14888998886443

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.

>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=98.73  E-value=8.4e-08  Score=76.26  Aligned_cols=83  Identities=8%  Similarity=0.101  Sum_probs=53.6

Q ss_pred             cCCeeecCCeEecc-cceEECCCeEECCCcEEcCCCc-------c-----------------eEECCCCeeCCCCEEccC
Q psy2215          68 SGNKVSRKSLVAGA-QNIVLTGKVIIQCDAVLRGDLA-------N-----------------IRTGRYCIISKGVVIRPP  122 (172)
Q Consensus        68 ~gn~Is~~a~I~G~-~nI~Igg~v~I~~~avIrGdl~-------~-----------------V~IG~~c~Ig~navI~p~  122 (172)
                      ++..|.+.+.|... ..+.||+++.|+++|+|+.+..       +                 +.||++|.|+++|+|.+.
T Consensus        22 ~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~~IGd~~~Ig~~a~I~~g  101 (164)
T cd04646          22 PGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEALKIGNNNVFESKSFVGKN  101 (164)
T ss_pred             CCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEeeEECCCCEEeCCCEECCC
Confidence            45556666666532 4578888888888888864421       2                 445555555555555544


Q ss_pred             CccCCCceEEeeCCCeEECCCcEEEecCCCeEECCCceeC
Q psy2215         123 FKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAP  162 (172)
Q Consensus       123 ~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~ig  162 (172)
                               +.+|+++.||++|+|.   ++++|+++++++
T Consensus       102 ---------v~Ig~~~~IgagsvV~---~~~~i~~~~vi~  129 (164)
T cd04646         102 ---------VIITDGCIIGAGCKLP---SSEILPENTVIY  129 (164)
T ss_pred             ---------CEECCCCEEeCCeEEC---CCcEECCCeEEe
Confidence                     3458888888888877   888888887743

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=98.72  E-value=1.2e-07  Score=70.10  Aligned_cols=37  Identities=22%  Similarity=0.232  Sum_probs=22.8

Q ss_pred             ceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccC
Q psy2215          83 NIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPP  122 (172)
Q Consensus        83 nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~  122 (172)
                      .+++++++.|.+++.|.++   +.||++|.|++++.|+++
T Consensus        11 ~v~ig~~~~I~~~~~i~g~---v~IG~~~~Ig~~~~I~~~   47 (101)
T cd05635          11 PIYIGKDAVIEPFAVIEGP---VYIGPGSRVKMGARIYGN   47 (101)
T ss_pred             CEEECCCCEECCCCEEeCC---CEECCCCEECCCCEEeCc
Confidence            3666666666666666655   556666666666555554

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

Probab=98.72  E-value=5e-08  Score=85.65  Aligned_cols=46  Identities=24%  Similarity=0.347  Sum_probs=23.0

Q ss_pred             eecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccC
Q psy2215          72 VSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPP  122 (172)
Q Consensus        72 Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~  122 (172)
                      |++.+.+..  +..|++++.|+++++|.++   +.||++|.|+++|+|+++
T Consensus        94 i~p~a~i~~--~a~Ig~~v~I~~~~~I~~~---v~IG~~~~I~~~~~Ig~~  139 (324)
T TIGR01853        94 IHPTAVVDP--SAKIGDGVTIGPNVVIGAG---VEIGENVIIGPGVVIGDD  139 (324)
T ss_pred             cCCCCEeCC--CcEECCCCEECCCcEEccC---cEECCcEEECCCCEECCc
Confidence            455555443  3455555555555555544   444444444444444433

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).

>PRK13627 carnitine operon protein CaiE; Provisional

Probab=98.72  E-value=1.1e-07  Score=78.24  Aligned_cols=85  Identities=13%  Similarity=0.167  Sum_probs=66.8

Q ss_pred             ccCCeeecCCeEecc-cceEECCCeEECCCcEEcCCC-cceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCc
Q psy2215          67 ASGNKVSRKSLVAGA-QNIVLTGKVIIQCDAVLRGDL-ANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTA  144 (172)
Q Consensus        67 ~~gn~Is~~a~I~G~-~nI~Igg~v~I~~~avIrGdl-~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~na  144 (172)
                      ..+..|...+.|.|. ..+.|+.++.|+++|+|++.. .+..||++|.|+++++|+.          ..+|++|+||.++
T Consensus        32 G~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g----------~vIG~~v~IG~ga  101 (196)
T PRK13627         32 GAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHG----------CVIGRDALVGMNS  101 (196)
T ss_pred             CCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEee----------EEECCCCEECcCC
Confidence            345566777888774 248999999999999998643 2678888888888888765          3469999999999


Q ss_pred             EEEecCCCeEECCCceeCCe
Q psy2215         145 SVRLKSPFAQIYSYIIAPCP  164 (172)
Q Consensus       145 vI~i~~pga~IGs~v~iga~  164 (172)
                      +|.   ++++||+++.+++.
T Consensus       102 ~V~---~g~~IG~~s~Vgag  118 (196)
T PRK13627        102 VIM---DGAVIGEESIVAAM  118 (196)
T ss_pred             ccC---CCcEECCCCEEcCC
Confidence            998   88999999885544

>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

Probab=98.71  E-value=6.9e-08  Score=84.80  Aligned_cols=16  Identities=13%  Similarity=0.067  Sum_probs=13.1

Q ss_pred             EeeCCCeEECCCcEEE
Q psy2215         132 VYPGSTVYLVFTASVR  147 (172)
Q Consensus       132 ~~pGd~V~IG~navI~  147 (172)
                      +.+||+|.||+|++|.
T Consensus       196 vvIgd~v~IGa~~~I~  211 (324)
T TIGR01853       196 VIIEDDVEIGANTTID  211 (324)
T ss_pred             EEECCCcEECCCCEEe
Confidence            3459999999999994

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=98.71  E-value=1.4e-07  Score=74.05  Aligned_cols=35  Identities=14%  Similarity=0.140  Sum_probs=15.8

Q ss_pred             EECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccC
Q psy2215          85 VLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPP  122 (172)
Q Consensus        85 ~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~  122 (172)
                      .+++++.|++++.|..+   ..|++++.||++|.|.+.
T Consensus        95 ~i~~~~~ig~~~~i~~~---~~i~~~~~ig~~~~i~~~  129 (201)
T TIGR03570        95 IVSPSASIGEGTVIMAG---AVINPDVRIGDNVIINTG  129 (201)
T ss_pred             EECCCCEECCCCEECCC---CEECCCCEECCCcEECCC
Confidence            34444444444444333   444455555555555443

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

Probab=98.70  E-value=7.1e-08  Score=84.65  Aligned_cols=46  Identities=20%  Similarity=0.270  Sum_probs=22.9

Q ss_pred             eecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccC
Q psy2215          72 VSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPP  122 (172)
Q Consensus        72 Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~  122 (172)
                      +++.+.+..  ++.|++++.|+++++|..+   +.||++|.|+++|+|+++
T Consensus       103 i~~~a~v~~--~~~ig~~~~I~~~~~I~~~---~~IG~~~~I~~~~~I~~~  148 (343)
T PRK00892        103 IHPSAVIDP--SAKIGEGVSIGPNAVIGAG---VVIGDGVVIGAGAVIGDG  148 (343)
T ss_pred             CCCCcEECC--CCEECCCCEECCCeEEecc---ceeCCCcEECCCCEEcCC
Confidence            444554443  3455555555555555544   444444444444444443

>PRK10191 putative acyl transferase; Provisional

Probab=98.70  E-value=1.2e-07  Score=75.03  Aligned_cols=75  Identities=15%  Similarity=0.050  Sum_probs=52.6

Q ss_pred             ceEECCCeEECC--CcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECCCce
Q psy2215          83 NIVLTGKVIIQC--DAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYII  160 (172)
Q Consensus        83 nI~Igg~v~I~~--~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~  160 (172)
                      +..||+++.|++  +++|.++   ++||++|.|+++++|+........  ...+||+|+||+++.|.   ++++||+++.
T Consensus        47 ~a~Ig~~~~I~~g~~i~I~~~---~~IGd~~~I~h~v~IG~~~~~~~~--~~~IGd~~~Ig~~~~I~---~~v~IG~~~~  118 (146)
T PRK10191         47 AATIGRRFTIHHGYAVVINKN---VVAGDDFTIRHGVTIGNRGADNMA--CPHIGNGVELGANVIIL---GDITIGNNVT  118 (146)
T ss_pred             CCEECCCeEECCCCeEEECCC---cEECCCCEECCCCEECCCCcCCCC--CCEECCCcEEcCCCEEe---CCCEECCCCE
Confidence            345666666666  4566655   888888888888888754221111  13469999999999999   7889999888


Q ss_pred             eCCeE
Q psy2215         161 APCPL  165 (172)
Q Consensus       161 iga~i  165 (172)
                      +++..
T Consensus       119 Igags  123 (146)
T PRK10191        119 VGAGS  123 (146)
T ss_pred             ECCCC
Confidence            66644

>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=98.69  E-value=1e-07  Score=66.73  Aligned_cols=73  Identities=11%  Similarity=0.040  Sum_probs=42.3

Q ss_pred             CeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEec
Q psy2215          70 NKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLK  149 (172)
Q Consensus        70 n~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~  149 (172)
                      .+|.+++.|.   +..|++++.|++++.|+.    ..|+++|.|++++.|...          ..++++.||+++.+.  
T Consensus         6 ~~I~~~~~i~---~~~Ig~~~~I~~~~~i~~----s~i~~~~~ig~~~~l~~s----------vi~~~~~i~~~~~v~--   66 (81)
T cd04652           6 TQVGEKTSIK---RSVIGANCKIGKRVKITN----CVIMDNVTIEDGCTLENC----------IIGNGAVIGEKCKLK--   66 (81)
T ss_pred             CEECCCCEEe---CcEECCCCEECCCCEEeC----cEEeCCCEECCCCEEecc----------EEeCCCEECCCCEEc--
Confidence            3444445443   245566666666666652    456666666666666432          246677777777777  


Q ss_pred             CCCeEECCCceeCC
Q psy2215         150 SPFAQIYSYIIAPC  163 (172)
Q Consensus       150 ~pga~IGs~v~iga  163 (172)
                        ++.|++++.++.
T Consensus        67 --~~ii~~~~~i~~   78 (81)
T cd04652          67 --DCLVGSGYRVEA   78 (81)
T ss_pred             --cCEECCCcEeCC
Confidence              666666665543

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>TIGR01172 cysE serine O-acetyltransferase

Probab=98.69  E-value=1.3e-07  Score=75.22  Aligned_cols=78  Identities=13%  Similarity=-0.039  Sum_probs=47.2

Q ss_pred             eEECCCeEECCCcEEcCCCc-----ceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECCC
Q psy2215          84 IVLTGKVIIQCDAVLRGDLA-----NIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSY  158 (172)
Q Consensus        84 I~Igg~v~I~~~avIrGdl~-----~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~  158 (172)
                      +.|+.++.|++++.|.....     .+.||++|.|+++++|+...... ......+||+|+||++|+|.   .+++||++
T Consensus        62 ~~I~~~~~Ig~~~~i~~~~g~~Ig~~~~IG~~~~I~~~v~ig~~~~~~-~~~~~~Ig~~v~Ig~~a~I~---~~v~IG~~  137 (162)
T TIGR01172        62 VDIHPGARIGRGVFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKEK-GKRHPTVGEGVMIGAGAKVL---GNIEVGEN  137 (162)
T ss_pred             eEeCCCCEECCCeEECCCCeEEECCCCEECCCCEEcCCCEECCCcccc-CCcCCEECCCcEEcCCCEEE---CCcEECCC
Confidence            44455555555554432210     25666666666666666432110 00113459999999999999   78999999


Q ss_pred             ceeCCeE
Q psy2215         159 IIAPCPL  165 (172)
Q Consensus       159 v~iga~i  165 (172)
                      +.+|+..
T Consensus       138 ~~Iga~s  144 (162)
T TIGR01172       138 AKIGANS  144 (162)
T ss_pred             CEECCCC
Confidence            9977654

Cysteine biosynthesis

>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

Probab=98.69  E-value=1.6e-07  Score=75.17  Aligned_cols=47  Identities=17%  Similarity=0.304  Sum_probs=26.7

Q ss_pred             cCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEc
Q psy2215          68 SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIR  120 (172)
Q Consensus        68 ~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~  120 (172)
                      .+.+|.+.+.|.+  ++.||+++.|++++.|++.    .||++|.|++++.|.
T Consensus        20 ~~~~I~~~a~i~~--~~~Ig~~~~I~~~~~I~~~----~Ig~~~~I~~~~~i~   66 (193)
T cd03353          20 VDVVIDPGVILEG--KTVIGEDCVIGPNCVIKDS----TIGDGVVIKASSVIE   66 (193)
T ss_pred             CCcEECCCCEEeC--cCEECCCCEECCCcEEeCC----EECCCCEEcCCeEEE
Confidence            3334455555543  5667777777777777642    555555555555444

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.69  E-value=5.3e-08  Score=86.93  Aligned_cols=109  Identities=16%  Similarity=0.212  Sum_probs=60.2

Q ss_pred             eeccce--ecccCCchhhhhhccccc---------cC-CeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCC
Q psy2215          44 FLSRGW--WFESKSSHKILVYSGAVA---------SG-NKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYC  111 (172)
Q Consensus        44 ~~~~g~--W~D~~~p~~Ll~~~~~~~---------~g-n~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c  111 (172)
                      +..+|.  |+|..+|+||..++.+..         .+ ..+.+.+...+. ++.||.++.|+++++|.++   +.||++|
T Consensus       215 ~~~~g~~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~~~~~~i~~-~~~ig~~~~i~~~~~i~~~---~~Ig~~~  290 (458)
T PRK14354        215 YQTEDFEESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDA-DVEIGSDTVIEPGVVIKGN---TVIGEDC  290 (458)
T ss_pred             EecCCcceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEECC-CcEECCCCEEeCCeEEecc---eEECCCC
Confidence            345554  567779988876553321         11 112333333332 5677777777777777776   7888888


Q ss_pred             eeCCCCEEccCC-----ccCCCce--EEeeCCCeEECCCcEEEecCCCeEECCCce
Q psy2215         112 IISKGVVIRPPF-----KKFAKGF--LVYPGSTVYLVFTASVRLKSPFAQIYSYII  160 (172)
Q Consensus       112 ~Ig~navI~p~~-----~~~~~g~--~~~pGd~V~IG~navI~i~~pga~IGs~v~  160 (172)
                      .|+++++|+.+.     .. ..+.  ...+|++|.||++|.|.   +++.||+++.
T Consensus       291 ~I~~~~~i~~~~ig~~~~I-~~~~i~~~~ig~~~~Ig~~~~i~---~~~~Ig~~~~  342 (458)
T PRK14354        291 VIGPGSRIVDSTIGDGVTI-TNSVIEESKVGDNVTVGPFAHLR---PGSVIGEEVK  342 (458)
T ss_pred             EECCCcEEeccEECCCCEE-EEEEEeCCEECCCcEECCceEec---CCCEEeCCcE
Confidence            888877765321     00 0000  01336666666666666   4444444444

>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family

Probab=98.69  E-value=1.6e-07  Score=77.51  Aligned_cols=87  Identities=15%  Similarity=0.185  Sum_probs=57.5

Q ss_pred             CCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCC---------------------
Q psy2215          69 GNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFA---------------------  127 (172)
Q Consensus        69 gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~---------------------  127 (172)
                      +..|...+.|.   ++.||.++.|++++.|+    .+.||++|.|++++.|.+..+...                     
T Consensus        25 ~~~Ig~~a~I~---~s~IG~~s~I~~~~~i~----~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~~~~~~~~~~~~~~~~   97 (204)
T TIGR03308        25 YTEIGERTRLR---EVALGDYSYVMRDCDII----YTTIGKFCSIAAMVRINATNHPMERPTLHHFTYRAAMYFDDASDD   97 (204)
T ss_pred             CcEECCCcEEe---CCEECCCCEECCCcEEe----eeEECCCCEECCCCEECCCCCCCCccccccccccccccccccccc
Confidence            33344444443   34555555555555555    378999999999999986532210                     


Q ss_pred             -------CceEEeeCCCeEECCCcEEEecCCCeEECCCceeCCeE
Q psy2215         128 -------KGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCPL  165 (172)
Q Consensus       128 -------~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~iga~i  165 (172)
                             ......+||+|+||.+++|.   ++++||+++.+++..
T Consensus        98 ~~~~~~~~~~~~~Ig~~~~Ig~~~~I~---~gv~Ig~~~~I~~gs  139 (204)
T TIGR03308        98 ADFFAWRRAKRVTIGHDVWIGHGAVIL---PGVTIGNGAVIAAGA  139 (204)
T ss_pred             ccccccccCCCeEECCCCEECCCCEEC---CCCEECCCCEECCCC
Confidence                   00113458999999999998   899999999866653

This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.

>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

Probab=98.67  E-value=1e-07  Score=83.59  Aligned_cols=56  Identities=23%  Similarity=0.213  Sum_probs=30.7

Q ss_pred             eEECCCCeeCCCCEEccCCccC--CCc-e-------EEeeCCCeEECCCcEEE-ecCCCeEECCCce
Q psy2215         105 IRTGRYCIISKGVVIRPPFKKF--AKG-F-------LVYPGSTVYLVFTASVR-LKSPFAQIYSYII  160 (172)
Q Consensus       105 V~IG~~c~Ig~navI~p~~~~~--~~g-~-------~~~pGd~V~IG~navI~-i~~pga~IGs~v~  160 (172)
                      +.||++|.|+++|+|+...-.|  ..+ .       .+.+||+|.||++++|. -.+.++.||+++.
T Consensus       167 ~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~Ig~~v~IGa~~~I~~~~~~~t~Ig~~~~  233 (343)
T PRK00892        167 VRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIGDDVEIGANTTIDRGALDDTVIGEGVK  233 (343)
T ss_pred             CEECCCCEECCCCEEeccCcCcccCCCceeeccccccEEECCCcEECCCcEEecCccccceeCCCCE
Confidence            5666666666666665321111  001 0       14559999999999995 1112345555544

>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]

Probab=98.67  E-value=9.4e-08  Score=84.91  Aligned_cols=56  Identities=21%  Similarity=0.131  Sum_probs=32.1

Q ss_pred             eEECCCCeeCCCCEEccCCccC---CCc-eE------EeeCCCeEECCCcEEE-ecCCCeEECCCce
Q psy2215         105 IRTGRYCIISKGVVIRPPFKKF---AKG-FL------VYPGSTVYLVFTASVR-LKSPFAQIYSYII  160 (172)
Q Consensus       105 V~IG~~c~Ig~navI~p~~~~~---~~g-~~------~~pGd~V~IG~navI~-i~~pga~IGs~v~  160 (172)
                      +.||++|.|+++++|+.+.-.|   ..| ..      +.+||+|.||+|+.|- =-|.++.||+++.
T Consensus       166 ~~IG~~v~I~~GavIG~dgFg~a~~~~g~~Ki~q~g~V~Igd~VeIGanT~Idrga~~dTvIg~~~k  232 (338)
T COG1044         166 VVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIGRVIIGDDVEIGANTTIDRGALDDTVIGEGVK  232 (338)
T ss_pred             cEECCceEECCCCEEccCccccccccCCceEcceeceEEECCceEEcccceeccccccCceecCCcE
Confidence            6666666666666666443222   223 11      2348999999998887 1112266666655

>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

Probab=98.67  E-value=2.6e-07  Score=72.39  Aligned_cols=65  Identities=17%  Similarity=0.246  Sum_probs=49.0

Q ss_pred             cCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215          68 SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR  147 (172)
Q Consensus        68 ~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~  147 (172)
                      .+..|...+.|.+  ++.|++++.|++++.|+++   +.||++|.|++++.|...          .+++++.|++++.+.
T Consensus        22 ~~~~I~~~a~i~~--~v~Ig~~~~I~~~~~i~~~---~~Ig~~~~I~~~~~i~~s----------iig~~~~I~~~~~i~   86 (163)
T cd05636          22 EGAIVRSGAYIEG--PVIIGKGCEIGPNAYIRGY---TVLGDGCVVGNSVEVKNS----------IIMDGTKVPHLNYVG   86 (163)
T ss_pred             CCCEECCCCEEeC--CeEECCCCEECCCCEEcCC---CEECCCCEECCCcEEeee----------EecCCCEeccCCEEe
Confidence            4455666666665  5888888888888888876   888888888888888642          347777777777776

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

Probab=98.66  E-value=1.8e-07  Score=78.70  Aligned_cols=95  Identities=14%  Similarity=0.140  Sum_probs=60.1

Q ss_pred             cCCeeecCCeEecc----------cceEECCCeEECCCcEEcCCC----cceEECCCCeeCCCCEEccCCcc-----CCC
Q psy2215          68 SGNKVSRKSLVAGA----------QNIVLTGKVIIQCDAVLRGDL----ANIRTGRYCIISKGVVIRPPFKK-----FAK  128 (172)
Q Consensus        68 ~gn~Is~~a~I~G~----------~nI~Igg~v~I~~~avIrGdl----~~V~IG~~c~Ig~navI~p~~~~-----~~~  128 (172)
                      ++..|...+.|.+.          .++.||+++.|+++++|....    .++.||++|.|++++.|..+...     +..
T Consensus        51 ~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~  130 (254)
T TIGR01852        51 EGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILAN  130 (254)
T ss_pred             CCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCCcEEECCCCEECCCCEEccCCEECCCCEECC
Confidence            45555556666431          368889999999988887432    25777777777666666433221     011


Q ss_pred             ceE----EeeCCCeEECCCcEEEecCCCeEECCCceeCCeE
Q psy2215         129 GFL----VYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCPL  165 (172)
Q Consensus       129 g~~----~~pGd~V~IG~navI~i~~pga~IGs~v~iga~i  165 (172)
                      +..    ..+||+|+||.++.|.   ++++||+++.+++..
T Consensus       131 ~~~i~~~~~Igd~~~Ig~~~~i~---~~v~Ig~~~~Ig~~s  168 (254)
T TIGR01852       131 NATLAGHVEVGDYAIIGGLVAVH---QFVRIGRYAMIGGLS  168 (254)
T ss_pred             CCEECCCcEECCCcEEeccCEEC---CCcEECCCCEEeeee
Confidence            110    2347778888888777   778888888855543

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).

>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA

Probab=98.66  E-value=2.2e-07  Score=71.38  Aligned_cols=76  Identities=18%  Similarity=0.179  Sum_probs=61.4

Q ss_pred             CCeeecCCeEecccceEECCCeEECCCcEEcCCC-----cceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCC
Q psy2215          69 GNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDL-----ANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFT  143 (172)
Q Consensus        69 gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl-----~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~n  143 (172)
                      +..+...+.|.  .+..|++++.|++++.|.+.+     .++.||++|.|+++++|.+.         ..+|+++.||++
T Consensus        37 ~~~I~~~~~I~--~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~Ig~~a~I~~g---------v~Ig~~~~Ig~g  105 (139)
T cd03350          37 GTMVDSWATVG--SCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIGANCEVVEG---------VIVGKGAVLAAG  105 (139)
T ss_pred             CeEEcCCCEEC--CCCEECCCCEECCCCEECCcccccccCCeEECCCCEECCCCEECCC---------CEECCCCEEcCC
Confidence            33344444442  368899999999999998754     46999999999999999988         457999999999


Q ss_pred             cEEEecCCCeEECCC
Q psy2215         144 ASVRLKSPFAQIYSY  158 (172)
Q Consensus       144 avI~i~~pga~IGs~  158 (172)
                      ++|.   ++++|+++
T Consensus       106 ~~V~---~~~~I~~~  117 (139)
T cd03350         106 VVLT---QSTPIYDR  117 (139)
T ss_pred             CEEc---CCeEeccc
Confidence            9999   88999987

It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.

>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=98.66  E-value=1.4e-07  Score=69.86  Aligned_cols=25  Identities=4%  Similarity=-0.153  Sum_probs=12.4

Q ss_pred             CCCeEECCCcEEEecCCCeEECCCceeCC
Q psy2215         135 GSTVYLVFTASVRLKSPFAQIYSYIIAPC  163 (172)
Q Consensus       135 Gd~V~IG~navI~i~~pga~IGs~v~iga  163 (172)
                      ++++.|++++.|.    ++.||+++.+|+
T Consensus        66 ~~~~~i~~~~~lg----~siIg~~v~ig~   90 (101)
T cd05635          66 EGYSNKQHDGFLG----HSYLGSWCNLGA   90 (101)
T ss_pred             cCCCEecCcCEEe----eeEECCCCEECC
Confidence            4445555555544    555555555443

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.65  E-value=7.6e-08  Score=86.41  Aligned_cols=66  Identities=14%  Similarity=0.286  Sum_probs=36.5

Q ss_pred             ecccCCchhhhhhcc---ccccCCeeecCCe--EecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEc
Q psy2215          50 WFESKSSHKILVYSG---AVASGNKVSRKSL--VAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIR  120 (172)
Q Consensus        50 W~D~~~p~~Ll~~~~---~~~~gn~Is~~a~--I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~  120 (172)
                      |.|.+++++++.++.   +...+..+...+.  +.|  ++.+|.++.|+++|.|.++   +.||++|.|+++|+|+
T Consensus       229 ~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~~~~~~--~~~ig~~~~I~~~~~i~~~---v~ig~~~~I~~~~~i~  299 (456)
T PRK09451        229 RLQLARLERVYQAEQAEKLLLAGVMLRDPARFDLRG--TLTHGRDVEIDTNVIIEGN---VTLGNRVKIGAGCVLK  299 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCEEeCCCEEEECC--cEEECCCCEEcCCeEEecC---cEECCCCEECCCceEe
Confidence            788888888776542   2222322211111  222  4566666666666666655   5666666666655554

>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=98.64  E-value=2.6e-07  Score=62.22  Aligned_cols=68  Identities=25%  Similarity=0.262  Sum_probs=54.5

Q ss_pred             cCCeeecCCeEecccceEECCCeEECCCcEEcCCC-----cceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECC
Q psy2215          68 SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDL-----ANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVF  142 (172)
Q Consensus        68 ~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl-----~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~  142 (172)
                      .+.++...+.|.+  ++.||+++.|++++.|.+..     .++.||++|.|++++.|.+.         ..+|+++.||+
T Consensus         5 ~~~~i~~~~~i~~--~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~~~---------~~ig~~~~i~~   73 (78)
T cd00208           5 EGVKIHPKAVIRG--PVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGG---------VKIGDNAVIGA   73 (78)
T ss_pred             CCeEECCCCEEeC--cEEECCCCEECCCCEEEeccCCCccCCcEECCCcEECCCCEEeCC---------CEECCCCEECc
Confidence            4556666777755  79999999999999998652     36999999999999999986         34577888887


Q ss_pred             CcEE
Q psy2215         143 TASV  146 (172)
Q Consensus       143 navI  146 (172)
                      +++|
T Consensus        74 ~s~v   77 (78)
T cd00208          74 GAVV   77 (78)
T ss_pred             CcEe
Confidence            7765

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.

>KOG1322|consensus

Probab=98.64  E-value=7.3e-08  Score=85.72  Aligned_cols=112  Identities=16%  Similarity=0.142  Sum_probs=74.8

Q ss_pred             eeeeccceecccCCchhhhhhccccccCCeeecC------CeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCC
Q psy2215          42 VDFLSRGWWFESKSSHKILVYSGAVASGNKVSRK------SLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISK  115 (172)
Q Consensus        42 ~~~~~~g~W~D~~~p~~Ll~~~~~~~~gn~Is~~------a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~  115 (172)
                      --|+.+|+|+|.|.|.|.+.+..+.+..-.....      +.+.|  |+.+..-+.++++|.|+.|   +.||++|.|++
T Consensus       219 ~a~~l~gfWmDIGqpkdf~~g~~~Yl~s~~~~t~~r~~p~~~i~~--nvlvd~~~~iG~~C~Ig~~---vvIG~r~~i~~  293 (371)
T KOG1322|consen  219 YAFDLPGFWMDIGQPKDFLTGFSFYLRSLPKYTSPRLLPGSKIVG--NVLVDSIASIGENCSIGPN---VVIGPRVRIED  293 (371)
T ss_pred             EEEecCchhhhcCCHHHHHHHHHHHHhhCcccCCccccCCccccc--cEeeccccccCCccEECCC---ceECCCcEecC
Confidence            3588999999999999999988887755444322      33333  5555666666667777666   67777777777


Q ss_pred             CCEEccCCccCCCceE-------EeeCCCeEECCCcEEEecCCCeEECCCcee
Q psy2215         116 GVVIRPPFKKFAKGFL-------VYPGSTVYLVFTASVRLKSPFAQIYSYIIA  161 (172)
Q Consensus       116 navI~p~~~~~~~g~~-------~~pGd~V~IG~navI~i~~pga~IGs~v~i  161 (172)
                      ++.|....-.-..-+.       ...|-++.||.++.|.   ..|+||++|.+
T Consensus       294 gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~~id---~~a~lG~nV~V  343 (371)
T KOG1322|consen  294 GVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWARID---KNAVLGKNVIV  343 (371)
T ss_pred             ceEEEeeEEEccceechhHHHHhhhccccccccCceEEe---cccEeccceEE
Confidence            6666543211000000       1127789999999888   88999999883

>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=98.64  E-value=2.3e-07  Score=63.47  Aligned_cols=30  Identities=30%  Similarity=0.410  Sum_probs=15.2

Q ss_pred             CCCeEECCCcEEcCCCcceEECCCCeeCCCCEEc
Q psy2215          87 TGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIR  120 (172)
Q Consensus        87 gg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~  120 (172)
                      +.++.|++++.|+ +   ..||++|.|++++.|+
T Consensus         3 g~~~~I~~~~~i~-~---s~ig~~~~ig~~~~i~   32 (79)
T cd05787           3 GRGTSIGEGTTIK-N---SVIGRNCKIGKNVVID   32 (79)
T ss_pred             cCCCEECCCCEEe-c---cEECCCCEECCCCEEe
Confidence            4455555555554 2   4455555555555554

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates

Probab=98.63  E-value=2.8e-07  Score=73.15  Aligned_cols=69  Identities=17%  Similarity=0.182  Sum_probs=55.7

Q ss_pred             CeeecCCeEecccceEECCCeEECCCcEEcCC---------------CcceEECCCCeeCCCCEEccCCccCCCceEEee
Q psy2215          70 NKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGD---------------LANIRTGRYCIISKGVVIRPPFKKFAKGFLVYP  134 (172)
Q Consensus        70 n~Is~~a~I~G~~nI~Igg~v~I~~~avIrGd---------------l~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~p  134 (172)
                      ..+...+.|....+|+||+++.|+++|.|...               ..++.||++|.||++++|.++         +.+
T Consensus        69 v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~~h~~~~~~~~~~~~~~~~v~IG~~~~Ig~~a~I~~g---------v~I  139 (169)
T cd03357          69 FYANFNCTILDVAPVTIGDNVLIGPNVQIYTAGHPLDPEERNRGLEYAKPITIGDNVWIGGGVIILPG---------VTI  139 (169)
T ss_pred             ceEcCCEEEeccCcEEECCCCEECCCCEEEeCCCCCChhHccccceecCCcEeCCCEEECCCCEEeCC---------CEE
Confidence            33444555554458999999999999999632               237999999999999999987         557


Q ss_pred             CCCeEECCCcEEE
Q psy2215         135 GSTVYLVFTASVR  147 (172)
Q Consensus       135 Gd~V~IG~navI~  147 (172)
                      |++++||++|+|.
T Consensus       140 g~~~~VgagavV~  152 (169)
T cd03357         140 GDNSVIGAGSVVT  152 (169)
T ss_pred             CCCCEECCCCEEc
Confidence            9999999999998

MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

Probab=98.62  E-value=4.7e-07  Score=70.35  Aligned_cols=83  Identities=20%  Similarity=0.177  Sum_probs=59.4

Q ss_pred             ccCCeeecCCeEecc-cceEECCCeEECCCcEEcCCCc-ceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCc
Q psy2215          67 ASGNKVSRKSLVAGA-QNIVLTGKVIIQCDAVLRGDLA-NIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTA  144 (172)
Q Consensus        67 ~~gn~Is~~a~I~G~-~nI~Igg~v~I~~~avIrGdl~-~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~na  144 (172)
                      ..+..|...+.|.|. ..+.||.++.|+++|+|.+... +..||++|.|+++|+|..          ..+|++++||+++
T Consensus        21 g~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~----------~~Ig~~~~Ig~~~   90 (153)
T cd04645          21 GEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHG----------CTIGDNCLIGMGA   90 (153)
T ss_pred             CCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEee----------eEECCCCEECCCC
Confidence            345556667777764 4689999999999999986422 578888888888888864          3357777777777


Q ss_pred             EEEecCCCeEECCCceeC
Q psy2215         145 SVRLKSPFAQIYSYIIAP  162 (172)
Q Consensus       145 vI~i~~pga~IGs~v~ig  162 (172)
                      .|.   .+++|++++.++
T Consensus        91 ~v~---~~~~ig~~~~ig  105 (153)
T cd04645          91 IIL---DGAVIGKGSIVA  105 (153)
T ss_pred             EEc---CCCEECCCCEEC
Confidence            776   566666666544

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.

>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

Probab=98.61  E-value=2.2e-07  Score=68.24  Aligned_cols=50  Identities=18%  Similarity=0.250  Sum_probs=36.0

Q ss_pred             ECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215          86 LTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR  147 (172)
Q Consensus        86 Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~  147 (172)
                      |++++.|+++++|.++   +.||++|.|++++.|++.         +.+|++|.|++++++.
T Consensus         1 ig~~~~I~~~~~i~~~---~~Ig~~~~I~~~~~i~~~---------~~Ig~~~~I~~~~~i~   50 (119)
T cd03358           1 IGDNCIIGTNVFIEND---VKIGDNVKIQSNVSIYEG---------VTIEDDVFIGPNVVFT   50 (119)
T ss_pred             CCCCCEECCCcEECCC---cEECCCcEECCCcEEeCC---------eEECCCcEEcCCeEEe
Confidence            3567777777777776   777777878777777655         4457777777777664

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.

>PRK11132 cysE serine acetyltransferase; Provisional

Probab=98.59  E-value=2.3e-07  Score=80.41  Aligned_cols=80  Identities=13%  Similarity=-0.029  Sum_probs=56.1

Q ss_pred             ceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCC----Cce-EEeeCCCeEECCCcEEEecCCCeEECC
Q psy2215          83 NIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFA----KGF-LVYPGSTVYLVFTASVRLKSPFAQIYS  157 (172)
Q Consensus        83 nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~----~g~-~~~pGd~V~IG~navI~i~~pga~IGs  157 (172)
                      ++.|+.++.|++++.|... ..+.||++|.||+||.|..+...-.    .+. ...+||+|+||+||.|.   ++++||+
T Consensus       141 gidI~~~a~IG~g~~I~h~-~givIG~~a~IGdnv~I~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~Il---ggv~IG~  216 (273)
T PRK11132        141 QVDIHPAAKIGRGIMLDHA-TGIVIGETAVIENDVSILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKIL---GNIEVGR  216 (273)
T ss_pred             eeEecCcceECCCeEEcCC-CCeEECCCCEECCCCEEcCCcEEecCcccCCCcCCEECCCcEEcCCCEEc---CCCEECC
Confidence            5778888888888887632 2367777777777776665543210    011 12459999999999999   9999999


Q ss_pred             CceeCCeEE
Q psy2215         158 YIIAPCPLH  166 (172)
Q Consensus       158 ~v~iga~i~  166 (172)
                      ++.+|+...
T Consensus       217 ~a~IGAgSv  225 (273)
T PRK11132        217 GAKIGAGSV  225 (273)
T ss_pred             CCEECCCCE
Confidence            999877654

>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

Probab=98.59  E-value=3.5e-07  Score=73.62  Aligned_cols=89  Identities=16%  Similarity=0.081  Sum_probs=54.0

Q ss_pred             CCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccC---C-------CceEEeeCCCe
Q psy2215          69 GNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF---A-------KGFLVYPGSTV  138 (172)
Q Consensus        69 gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~---~-------~g~~~~pGd~V  138 (172)
                      +..|.+.+.|.+  +++||+++.|+++++|..+   +.||++|.|+++++|+.....+   .       ..-.+.+|+++
T Consensus        25 ~~~i~~~~~i~~--~~~Ig~~~~i~~~~~i~~~---~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~Ig~~~   99 (205)
T cd03352          25 GVVIGPGVVIGD--GVVIGDDCVIHPNVTIYEG---CIIGDRVIIHSGAVIGSDGFGFAPDGGGWVKIPQLGGVIIGDDV   99 (205)
T ss_pred             CCEECCCCEECC--CCEECCCCEECCCCEEcCC---CEECCCcEECCCCEEcCCCceeEecCCcEEEcCCcceEEECCCE
Confidence            333444444432  5677777777777777766   7888888888888887421100   0       00014559999


Q ss_pred             EECCCcEEE-ecCCCeEECCCceeC
Q psy2215         139 YLVFTASVR-LKSPFAQIYSYIIAP  162 (172)
Q Consensus       139 ~IG~navI~-i~~pga~IGs~v~ig  162 (172)
                      .||+++++. -.+.++.||+++.++
T Consensus       100 ~Ig~~~~i~~~~~~~~~Ig~~~~i~  124 (205)
T cd03352         100 EIGANTTIDRGALGDTVIGDGTKID  124 (205)
T ss_pred             EECCCCEEeccccCCeEECCCCEEC
Confidence            999999996 112345666655533

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>PLN02241 glucose-1-phosphate adenylyltransferase

Probab=98.59  E-value=2.8e-07  Score=83.12  Aligned_cols=75  Identities=13%  Similarity=0.253  Sum_probs=45.6

Q ss_pred             eeeccceecccCCchhhhhhccccccCCe----------e------ecCCeEecc--cceEECCCeEECCCcEEcCCCcc
Q psy2215          43 DFLSRGWWFESKSSHKILVYSGAVASGNK----------V------SRKSLVAGA--QNIVLTGKVIIQCDAVLRGDLAN  104 (172)
Q Consensus        43 ~~~~~g~W~D~~~p~~Ll~~~~~~~~gn~----------I------s~~a~I~G~--~nI~Igg~v~I~~~avIrGdl~~  104 (172)
                      .+..+|+|.|.++|++++.++...+....          +      .+.+.+.|.  .+..|+.+|.|+ +|.|+    +
T Consensus       257 ~~~~~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~s~I~~~~~I~-~~~I~----~  331 (436)
T PLN02241        257 AYLFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSPRFLPPSKIEDCRITDSIISHGCFLR-ECKIE----H  331 (436)
T ss_pred             EEeeCCEEEECCCHHHHHHHHHHHhcCCchhhccCCCCcccccCCCCCCcEecCCeEEEeEEcCCcEEc-CeEEE----e
Confidence            34467899999999998887776664421          0      011222222  113455555555 55553    3


Q ss_pred             eEECCCCeeCCCCEEccC
Q psy2215         105 IRTGRYCIISKGVVIRPP  122 (172)
Q Consensus       105 V~IG~~c~Ig~navI~p~  122 (172)
                      ..||++|.|+++|+|..+
T Consensus       332 svI~~~~~Ig~~~~I~~s  349 (436)
T PLN02241        332 SVVGLRSRIGEGVEIEDT  349 (436)
T ss_pred             eEEcCCCEECCCCEEEEe
Confidence            678888888888887654

>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E

Probab=98.59  E-value=8.1e-07  Score=65.50  Aligned_cols=71  Identities=14%  Similarity=0.106  Sum_probs=58.8

Q ss_pred             cCCeeecCCeEecccceEECCCeEECCCcEEcCC------------CcceEECCCCeeCCCCEEccCCccCCCceEEeeC
Q psy2215          68 SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGD------------LANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPG  135 (172)
Q Consensus        68 ~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGd------------l~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pG  135 (172)
                      ++..|.+.+.|.....++||+++.|++++.|...            ..++.||++|.|+.++.|.+.         +.+|
T Consensus         8 ~~~~I~~~~~i~~~~~i~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g---------~~Ig   78 (107)
T cd05825           8 DNSWIGEGVWIYNLAPVTIGSDACISQGAYLCTGSHDYRSPAFPLITAPIVIGDGAWVAAEAFVGPG---------VTIG   78 (107)
T ss_pred             CCCEECCCCEEeeCCceEECCCCEECCCeEeecCCCCCCcCccceecCCEEECCCCEECCCCEECCC---------CEEC
Confidence            4445667788876668999999999999998521            127999999999999999987         5579


Q ss_pred             CCeEECCCcEEE
Q psy2215         136 STVYLVFTASVR  147 (172)
Q Consensus       136 d~V~IG~navI~  147 (172)
                      +++.||++|+|.
T Consensus        79 ~~~~i~~gs~v~   90 (107)
T cd05825          79 EGAVVGARSVVV   90 (107)
T ss_pred             CCCEECCCCEEe
Confidence            999999999998

coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.

>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]

Probab=98.58  E-value=3.3e-07  Score=79.24  Aligned_cols=112  Identities=13%  Similarity=0.144  Sum_probs=73.7

Q ss_pred             cceecccCCch-hhhhhccccccCCeeecCCeEecccceEECCCeEECCCcEEc------------CCCc---ceEECCC
Q psy2215          47 RGWWFESKSSH-KILVYSGAVASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLR------------GDLA---NIRTGRY  110 (172)
Q Consensus        47 ~g~W~D~~~p~-~Ll~~~~~~~~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIr------------Gdl~---~V~IG~~  110 (172)
                      ++||..+.... ....+..+...|-||.+.+.+.-  ...|++++++++++.|.            +...   -+.||++
T Consensus        85 ~~~~~~v~~~~~~~~~~d~~~~~g~RI~p~a~VR~--ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn  162 (271)
T COG2171          85 RGYYDKVDSVDKAPRMLDYFVPEGVRIVPGAIVRL--GAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKN  162 (271)
T ss_pred             ccceeeccccccccchhhhcccCceeecCccEEee--ccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCC
Confidence            34455554444 23556666777788888887754  46788888888755553            1110   2778888


Q ss_pred             CeeCCCCEEccCCccCCCceEEeeCCCeEECCCc-EEEecCCCeEECCCceeCCeE
Q psy2215         111 CIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTA-SVRLKSPFAQIYSYIIAPCPL  165 (172)
Q Consensus       111 c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~na-vI~i~~pga~IGs~v~iga~i  165 (172)
                      |.||-++.|..--.. ...-++.+||||.||+|+ ++.    |+.+|++|++.+.+
T Consensus       163 ~higgGa~I~GVLep-~~a~Pv~IgdncliGAns~~ve----GV~vGdg~VV~aGv  213 (271)
T COG2171         163 SHIGGGASIGGVLEP-LQANPVIIGDNCLIGANSEVVE----GVIVGDGCVVAAGV  213 (271)
T ss_pred             cccCCcceEeEEecC-CCCCCeEECCccEeccccceEe----eeEeCCCcEEecce
Confidence            888888887742111 122346779999999999 666    99999999965543

>KOG1461|consensus

Probab=98.56  E-value=1.6e-07  Score=88.84  Aligned_cols=72  Identities=18%  Similarity=0.169  Sum_probs=50.9

Q ss_pred             cceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE--ecCCCeEECCCc
Q psy2215          82 QNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR--LKSPFAQIYSYI  159 (172)
Q Consensus        82 ~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~--i~~pga~IGs~v  159 (172)
                      +++.||-++.|+.++.|+    +-.||++|.||+|++|..+          ++|++|+||.||.|+  |+-.+++|++++
T Consensus       332 ~~~~ig~gT~Ig~g~~I~----NSVIG~~c~IgsN~~I~~S----------~iw~~v~Igdnc~I~~aii~d~v~i~~~~  397 (673)
T KOG1461|consen  332 ANVVIGAGTKIGSGSKIS----NSVIGANCRIGSNVRIKNS----------FIWNNVTIGDNCRIDHAIICDDVKIGEGA  397 (673)
T ss_pred             ceEEecccccccCCCeee----cceecCCCEecCceEEeee----------eeecCcEECCCceEeeeEeecCcEeCCCc
Confidence            345555555555555555    4789999999999999874          469999999999999  666666666666


Q ss_pred             e--eCCeEEe
Q psy2215         160 I--APCPLHV  167 (172)
Q Consensus       160 ~--iga~i~~  167 (172)
                      .  .||+++.
T Consensus       398 ~l~~g~vl~~  407 (673)
T KOG1461|consen  398 ILKPGSVLGF  407 (673)
T ss_pred             ccCCCcEEee
Confidence            5  3555543

>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=98.56  E-value=3.4e-07  Score=78.08  Aligned_cols=61  Identities=21%  Similarity=0.155  Sum_probs=43.1

Q ss_pred             eecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEE
Q psy2215          72 VSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASV  146 (172)
Q Consensus        72 Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI  146 (172)
                      |++.+.|..  +..|++++.|+++|+|.++   +.||++|.|+++++|+++.         .+|+++.|+++++|
T Consensus         2 Ihp~a~I~~--~a~Ig~~v~Igp~~~I~~~---v~IG~~~~I~~~~~I~~~~---------~IG~~~~I~~~a~I   62 (255)
T PRK12461          2 IHPTAVIDP--SAKLGSGVEIGPFAVIGAN---VEIGDGTWIGPHAVILGPT---------RIGKNNKIHQGAVV   62 (255)
T ss_pred             cCCCCEECC--CCEECCCCEECCCCEECCC---CEECCCcEEccCCEEeCCC---------EECCCCEEccCcEe
Confidence            344555543  5678888999999999877   8888888888888888763         34555555555554

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=98.56  E-value=3.1e-07  Score=81.47  Aligned_cols=46  Identities=15%  Similarity=0.310  Sum_probs=30.9

Q ss_pred             CCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEc
Q psy2215          69 GNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIR  120 (172)
Q Consensus        69 gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~  120 (172)
                      +..|...+.|.+  ++.||.++.|+++|+|++    ..||++|.|+++|.|.
T Consensus       267 ~~~i~~~~~i~~--~~~ig~~~~I~~~~~i~~----~~i~~~~~I~~~~~i~  312 (451)
T TIGR01173       267 DVEIDPNVILEG--KVKIGDDVVIGPGCVIKN----SVIGSNVVIKAYSVLE  312 (451)
T ss_pred             CCEEcCCeEEeC--ceEECCCCEECCCcEEee----eEecCCCEEeeecEEe
Confidence            345566666665  578888889988888873    5666666666554443

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

Probab=98.55  E-value=7.3e-07  Score=64.21  Aligned_cols=70  Identities=20%  Similarity=0.213  Sum_probs=56.7

Q ss_pred             CCeeecCCeEecccceEECCCeEECCCcEEcCC----------------CcceEECCCCeeCCCCEEccCCccCCCceEE
Q psy2215          69 GNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGD----------------LANIRTGRYCIISKGVVIRPPFKKFAKGFLV  132 (172)
Q Consensus        69 gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGd----------------l~~V~IG~~c~Ig~navI~p~~~~~~~g~~~  132 (172)
                      +..|.+.+.|.+..++.||+++.|+++|+|...                ..++.||++|.|++++.|.+.         .
T Consensus         7 ~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~---------~   77 (109)
T cd04647           7 NVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPG---------V   77 (109)
T ss_pred             CcEECCCCEEecCCceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCC---------C
Confidence            345666777877678999999999999999743                237889999999999999876         4


Q ss_pred             eeCCCeEECCCcEEE
Q psy2215         133 YPGSTVYLVFTASVR  147 (172)
Q Consensus       133 ~pGd~V~IG~navI~  147 (172)
                      .+|++++||+++.|.
T Consensus        78 ~ig~~~~i~~~~~v~   92 (109)
T cd04647          78 TIGDGAVVGAGSVVT   92 (109)
T ss_pred             EECCCCEECCCCEEe
Confidence            468889999998888

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.

>PLN02739 serine acetyltransferase

Probab=98.53  E-value=3.2e-07  Score=82.05  Aligned_cols=58  Identities=14%  Similarity=-0.044  Sum_probs=35.0

Q ss_pred             eEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECCCceeCCeEE
Q psy2215         105 IRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCPLH  166 (172)
Q Consensus       105 V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~iga~i~  166 (172)
                      +.||++|.|..+++|+...+.. +.-...+||+|+||+||+|.   ++++||+++.+|+...
T Consensus       232 avIGdnv~I~~gVTIGg~g~~~-g~r~p~IGd~V~IGagA~Il---G~V~IGd~aiIGAGSV  289 (355)
T PLN02739        232 AVIGDRVSILHGVTLGGTGKET-GDRHPKIGDGALLGACVTIL---GNISIGAGAMVAAGSL  289 (355)
T ss_pred             CEECCCCEEcCCceeCCcCCcC-CCCCcEECCCCEEcCCCEEe---CCeEECCCCEECCCCE
Confidence            4455555555555554321110 00113458899999999888   7788888888776643

>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional

Probab=98.53  E-value=8.8e-07  Score=76.73  Aligned_cols=57  Identities=11%  Similarity=-0.048  Sum_probs=37.2

Q ss_pred             eEECCCCeeCCCCEEccCCccCC-----CceEEeeCCCeEECCCcEEEecCCCeEECCCceeCCe
Q psy2215         105 IRTGRYCIISKGVVIRPPFKKFA-----KGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCP  164 (172)
Q Consensus       105 V~IG~~c~Ig~navI~p~~~~~~-----~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~iga~  164 (172)
                      +.||.+|.||+||.|.+....-.     ......+||+|+||++|+|.   +++.||+++++++.
T Consensus       145 a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~---~Gv~IGdgavIgag  206 (272)
T PRK11830        145 ATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVV---EGVIVEEGSVLGMG  206 (272)
T ss_pred             cEECCCCEECCCcEECCCccCCCCccccCcCCeEEcCCCEECCCCEEc---CCCEECCCCEEcCC
Confidence            45566666666666665542100     00125669999999999997   78899998885543

>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine

Probab=98.53  E-value=8.3e-07  Score=64.38  Aligned_cols=76  Identities=16%  Similarity=0.024  Sum_probs=43.8

Q ss_pred             eEECCCeEECCCcEEcCCCcc------eEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECC
Q psy2215          84 IVLTGKVIIQCDAVLRGDLAN------IRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYS  157 (172)
Q Consensus        84 I~Igg~v~I~~~avIrGdl~~------V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs  157 (172)
                      ++|++++.|++++.|... ..      +.||++|.|++++.|+.....- ..-...+||+++|++++.+.   ++++||+
T Consensus         3 ~~i~~~~~ig~~~~i~~~-~~~~ig~~~~Ig~~~~i~~~~~i~~~~~~~-~~~~~~Ig~~~~Ig~~~~i~---~~~~Ig~   77 (101)
T cd03354           3 IDIHPGAKIGPGLFIDHG-TGIVIGETAVIGDNCTIYQGVTLGGKGKGG-GKRHPTIGDNVVIGAGAKIL---GNITIGD   77 (101)
T ss_pred             eEeCCCCEECCCEEECCC-CeEEECCCCEECCCCEEcCCCEECCCccCC-cCCCCEECCCcEEcCCCEEE---CcCEECC
Confidence            556666666666666432 22      4444444444444444432200 00013468999999999988   7788888


Q ss_pred             CceeCCe
Q psy2215         158 YIIAPCP  164 (172)
Q Consensus       158 ~v~iga~  164 (172)
                      ++.+++.
T Consensus        78 ~~~i~~~   84 (101)
T cd03354          78 NVKIGAN   84 (101)
T ss_pred             CCEECCC
Confidence            8875443

This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.52  E-value=5.8e-07  Score=80.20  Aligned_cols=72  Identities=13%  Similarity=0.128  Sum_probs=43.3

Q ss_pred             eccce--ecccCCchhhhhhccc---------cccCCe-eecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCe
Q psy2215          45 LSRGW--WFESKSSHKILVYSGA---------VASGNK-VSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCI  112 (172)
Q Consensus        45 ~~~g~--W~D~~~p~~Ll~~~~~---------~~~gn~-Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~  112 (172)
                      ...+.  |.+.++|.+|..+..+         ...+.. +++...+.+ .++.||.++.|++++.|.++   +.||++|.
T Consensus       206 ~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~Ig~~~~i~~~~~I~~~---~~ig~~~~  281 (448)
T PRK14357        206 KTEDLLEITGVNTRIQLAWLEKQLRMRILEELMENGVTILDPNTTYIH-YDVEIGMDTIIYPMTFIEGK---TRIGEDCE  281 (448)
T ss_pred             ecCCHHHEEccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEEc-cceEECCCcEEcCCcEEEee---eEECCCcE
Confidence            34566  6667788877553222         223333 233333444 26777777777777777765   77777777


Q ss_pred             eCCCCEEc
Q psy2215         113 ISKGVVIR  120 (172)
Q Consensus       113 Ig~navI~  120 (172)
                      |+++|+|.
T Consensus       282 I~~~~~i~  289 (448)
T PRK14357        282 IGPMTRIV  289 (448)
T ss_pred             ECCCceec
Confidence            77776543

>PLN02694 serine O-acetyltransferase

Probab=98.52  E-value=3.9e-07  Score=79.81  Aligned_cols=80  Identities=13%  Similarity=-0.007  Sum_probs=58.6

Q ss_pred             ceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCc----e-EEeeCCCeEECCCcEEEecCCCeEECC
Q psy2215          83 NIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKG----F-LVYPGSTVYLVFTASVRLKSPFAQIYS  157 (172)
Q Consensus        83 nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g----~-~~~pGd~V~IG~navI~i~~pga~IGs  157 (172)
                      +|.|+.++.|++++.|... ..+.||++|.||+||.|..+...-..+    . ...+||+|+||+||+|.   ++++||+
T Consensus       160 gvdI~p~A~IG~gv~Idh~-tGVVIGe~a~IGdnv~I~~~VtLGg~g~~~~~r~piIGd~V~IGagA~Il---ggi~IGd  235 (294)
T PLN02694        160 AVDIHPAAKIGKGILFDHA-TGVVIGETAVIGNNVSILHHVTLGGTGKACGDRHPKIGDGVLIGAGATIL---GNVKIGE  235 (294)
T ss_pred             eEEeCCcceecCCEEEeCC-CCeEECCCcEECCCCEEeecceeCCcccccCCCccEECCCeEECCeeEEC---CCCEECC
Confidence            4788888888888888742 348888888888888888654321110    0 13459999999999998   7899999


Q ss_pred             CceeCCeEE
Q psy2215         158 YIIAPCPLH  166 (172)
Q Consensus       158 ~v~iga~i~  166 (172)
                      ++.+|+...
T Consensus       236 ~a~IGAgSV  244 (294)
T PLN02694        236 GAKIGAGSV  244 (294)
T ss_pred             CCEECCCCE
Confidence            998776543

>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

Probab=98.51  E-value=7.4e-07  Score=61.44  Aligned_cols=61  Identities=15%  Similarity=0.066  Sum_probs=33.5

Q ss_pred             eEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECCCcee
Q psy2215          84 IVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIA  161 (172)
Q Consensus        84 I~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~i  161 (172)
                      ..|+.++.|++++.|. +   ..||++|.|++++.|...          ..++++.|++++.+.   .++.|++++.+
T Consensus        17 s~ig~~~~Ig~~~~i~-~---svi~~~~~i~~~~~i~~s----------vv~~~~~i~~~~~i~---~~~~ig~~~~i   77 (79)
T cd03356          17 SVIGDNVRIGDGVTIT-N---SILMDNVTIGANSVIVDS----------IIGDNAVIGENVRVV---NLCIIGDDVVV   77 (79)
T ss_pred             CEECCCCEECCCCEEe-C---CEEeCCCEECCCCEEECC----------EECCCCEECCCCEEc---CCeEECCCeEE
Confidence            3455555555555554 2   445666666666655532          236666666666666   33666655554

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

Probab=98.49  E-value=5.9e-07  Score=72.31  Aligned_cols=83  Identities=16%  Similarity=0.179  Sum_probs=63.7

Q ss_pred             cCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215          68 SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR  147 (172)
Q Consensus        68 ~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~  147 (172)
                      ++..+++.+.|.  .+..|+++++|+++|+|.++   ++||++|.|+++++|+..         ..+|++|.|+++++|.
T Consensus         6 ~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~~~---~~Ig~~~~i~~~~~i~~~---------~~Ig~~~~I~~~~~i~   71 (205)
T cd03352           6 ENVSIGPNAVIG--EGVVIGDGVVIGPGVVIGDG---VVIGDDCVIHPNVTIYEG---------CIIGDRVIIHSGAVIG   71 (205)
T ss_pred             CCCEECCCCEEC--CCCEECCCCEECCCCEECCC---CEECCCCEECCCCEEcCC---------CEECCCcEECCCCEEc
Confidence            455566666664  36788999999999999877   999999999999999987         4568999999999884


Q ss_pred             -e---------------cCCCeEECCCceeCCe
Q psy2215         148 -L---------------KSPFAQIYSYIIAPCP  164 (172)
Q Consensus       148 -i---------------~~pga~IGs~v~iga~  164 (172)
                       -               .+..+.|++++.+++.
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~Ig~~  104 (205)
T cd03352          72 SDGFGFAPDGGGWVKIPQLGGVIIGDDVEIGAN  104 (205)
T ss_pred             CCCceeEecCCcEEEcCCcceEEECCCEEECCC
Confidence             0               0125788888886554

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

Probab=98.49  E-value=7.8e-07  Score=71.23  Aligned_cols=74  Identities=18%  Similarity=0.152  Sum_probs=50.7

Q ss_pred             ceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccC-----CCce---EEeeCCCeEECCCcEEEecCCCeE
Q psy2215          83 NIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF-----AKGF---LVYPGSTVYLVFTASVRLKSPFAQ  154 (172)
Q Consensus        83 nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~-----~~g~---~~~pGd~V~IG~navI~i~~pga~  154 (172)
                      .+.|+.++.|+++|.|.++   +.||++|.|+++|.|+... ..     ..+.   ...++++++||+++.|.   +++.
T Consensus        15 ~v~ig~~~~I~~~a~i~~~---~~Ig~~~~I~~~~~I~~~~-Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~---~~~~   87 (193)
T cd03353          15 DVEIGVDVVIDPGVILEGK---TVIGEDCVIGPNCVIKDST-IGDGVVIKASSVIEGAVIGNGATVGPFAHLR---PGTV   87 (193)
T ss_pred             CeEECCCcEECCCCEEeCc---CEECCCCEECCCcEEeCCE-ECCCCEEcCCeEEEeeEECCCCEECCccEEc---CccE
Confidence            5888999999999999876   8999999999999888651 10     1111   12336777777777776   5566


Q ss_pred             ECCCceeCC
Q psy2215         155 IYSYIIAPC  163 (172)
Q Consensus       155 IGs~v~iga  163 (172)
                      |++++.++.
T Consensus        88 Ig~~~~Ig~   96 (193)
T cd03353          88 LGEGVHIGN   96 (193)
T ss_pred             ECCCCEECC
Confidence            665555443

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

Probab=98.48  E-value=3.9e-07  Score=83.35  Aligned_cols=96  Identities=17%  Similarity=0.130  Sum_probs=66.8

Q ss_pred             ccCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccC-----Ccc--CCCceEEeeCCCeE
Q psy2215          67 ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPP-----FKK--FAKGFLVYPGSTVY  139 (172)
Q Consensus        67 ~~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~-----~~~--~~~g~~~~pGd~V~  139 (172)
                      ..|-.+..-++++=...+.||.++.|.++++|+|.   +.||++|.||++|+|...     ...  |+-......|+++.
T Consensus       252 ~~GVtl~dP~t~~i~~dv~ig~DvvI~p~v~l~G~---t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~  328 (460)
T COG1207         252 LAGVTLIDPATTYIRGDVEIGRDVVIEPNVILEGN---TVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGAT  328 (460)
T ss_pred             HcCcEEeCCCeEEEcCcEEECCceEEecCcEEeee---EEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcc
Confidence            45544433333333346899999999999999998   889999999988665543     221  11111123499999


Q ss_pred             ECCCcEEEecCCCeEECCCceeCCeEEec
Q psy2215         140 LVFTASVRLKSPFAQIYSYIIAPCPLHVH  168 (172)
Q Consensus       140 IG~navI~i~~pga~IGs~v~iga~i~~~  168 (172)
                      ||+.+.++   |++.|++++++|.-++-+
T Consensus       329 VGPfA~LR---Pg~~L~~~~hIGNFVEvK  354 (460)
T COG1207         329 VGPFARLR---PGAVLGADVHIGNFVEVK  354 (460)
T ss_pred             cCCccccC---CcCcccCCCeEeeeEEEe
Confidence            99999999   999999988877766554

>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional

Probab=98.48  E-value=1.1e-06  Score=71.45  Aligned_cols=79  Identities=16%  Similarity=0.191  Sum_probs=62.1

Q ss_pred             cCCeeecCCeEecccceEECCCeEECCCcEEcCC------------------------CcceEECCCCeeCCCCEEccCC
Q psy2215          68 SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGD------------------------LANIRTGRYCIISKGVVIRPPF  123 (172)
Q Consensus        68 ~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGd------------------------l~~V~IG~~c~Ig~navI~p~~  123 (172)
                      ++..+...+.|....++.||+++.|++++.|.+.                        ..++.||++|.||++++|.++ 
T Consensus        70 ~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g-  148 (192)
T PRK09677         70 DNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPDMRTLESSAVVIGQRVWIGENVTILPG-  148 (192)
T ss_pred             CCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChhhcccccCCeEEcCCcEECCCCEEcCC-
Confidence            3444556667665568999999999999999742                        136899999999999999998 


Q ss_pred             ccCCCceEEeeCCCeEECCCcEEEecCCCeEECCCce
Q psy2215         124 KKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYII  160 (172)
Q Consensus       124 ~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~  160 (172)
                              +.+|++++||++|+|.    . .|.+++.
T Consensus       149 --------~~Ig~~~~Iga~s~v~----~-~i~~~~~  172 (192)
T PRK09677        149 --------VSIGNGCIVGANSVVT----K-SIPENTV  172 (192)
T ss_pred             --------CEECCCCEECCCCEEC----c-ccCCCcE
Confidence                    5579999999999999    3 2555555

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.48  E-value=3.8e-07  Score=81.30  Aligned_cols=35  Identities=34%  Similarity=0.519  Sum_probs=22.2

Q ss_pred             ceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEc
Q psy2215          83 NIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIR  120 (172)
Q Consensus        83 nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~  120 (172)
                      +..|++++.|++++.|.++   +.||++|.|+++++|.
T Consensus       262 ~~~ig~~~~i~~~~~i~~~---~~ig~~~~I~~~~~I~  296 (450)
T PRK14360        262 TVELGPDVIIEPQTHLRGN---TVIGSGCRIGPGSLIE  296 (450)
T ss_pred             CEEECCCCEECCCCEEeCC---cEECCCCEECCCcEEE
Confidence            4556666666666666655   6666666666666554

>PRK09527 lacA galactoside O-acetyltransferase; Reviewed

Probab=98.47  E-value=8.3e-07  Score=73.66  Aligned_cols=67  Identities=19%  Similarity=0.191  Sum_probs=56.8

Q ss_pred             eecCCeEecccceEECCCeEECCCcEEcCC---------------CcceEECCCCeeCCCCEEccCCccCCCceEEeeCC
Q psy2215          72 VSRKSLVAGAQNIVLTGKVIIQCDAVLRGD---------------LANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGS  136 (172)
Q Consensus        72 Is~~a~I~G~~nI~Igg~v~I~~~avIrGd---------------l~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd  136 (172)
                      +...+.|.+..+|.||+++.|+++|.|..+               ..+|+||++|.||.+++|.++         +.+|+
T Consensus        84 In~~~~I~d~~~I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~IGd~v~IG~~~~I~~g---------v~IG~  154 (203)
T PRK09527         84 ANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPG---------VTIGD  154 (203)
T ss_pred             ECCCcEEecCCCEEECCCCEECCCCEEEeCCCCCChhhccccccccCCeEECCCcEECCCCEEcCC---------CEECC
Confidence            455677777678999999999999999732               126999999999999999998         55799


Q ss_pred             CeEECCCcEEE
Q psy2215         137 TVYLVFTASVR  147 (172)
Q Consensus       137 ~V~IG~navI~  147 (172)
                      +++||++++|.
T Consensus       155 ~~vIgagsvV~  165 (203)
T PRK09527        155 NSVIGAGSVVT  165 (203)
T ss_pred             CCEECCCCEEc
Confidence            99999999998

>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=98.46  E-value=9.2e-07  Score=76.59  Aligned_cols=44  Identities=14%  Similarity=0.087  Sum_probs=32.7

Q ss_pred             ceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECCCc
Q psy2215         104 NIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYI  159 (172)
Q Consensus       104 ~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v  159 (172)
                      ++.||++|.||++|.|.++         +.+|+++.||++++|.   ++++|++..
T Consensus       173 ~ViIgDnv~IGa~a~I~~G---------V~IG~gavIGaGavI~---~~~~I~~~~  216 (269)
T TIGR00965       173 PTIIEDNCFIGARSEIVEG---------VIVEEGSVISMGVFIG---QSTKIYDRE  216 (269)
T ss_pred             CeEECCCCEECCCCEEcCC---------CEECCCCEEeCCCEEC---CCCEEeccc
Confidence            5778888888888888776         4457777777777777   777777654

The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).

>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=98.46  E-value=2.1e-06  Score=59.95  Aligned_cols=68  Identities=15%  Similarity=0.071  Sum_probs=54.2

Q ss_pred             ECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE--ecCCCeEECCCce-eC
Q psy2215          86 LTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR--LKSPFAQIYSYII-AP  162 (172)
Q Consensus        86 Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~--i~~pga~IGs~v~-ig  162 (172)
                      |++++.|++++.|+ +   ..||++|.|+++|.|+..          ..+++++||++|.|.  ++++++.|++++. .+
T Consensus         2 ig~~~~I~~~~~i~-~---~~Ig~~~~I~~~~~i~~s----------~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~~   67 (81)
T cd04652           2 VGENTQVGEKTSIK-R---SVIGANCKIGKRVKITNC----------VIMDNVTIEDGCTLENCIIGNGAVIGEKCKLKD   67 (81)
T ss_pred             ccCCCEECCCCEEe-C---cEECCCCEECCCCEEeCc----------EEeCCCEECCCCEEeccEEeCCCEECCCCEEcc
Confidence            67889999999987 4   789999999999999863          358999999999999  6677777777766 34


Q ss_pred             CeEEe
Q psy2215         163 CPLHV  167 (172)
Q Consensus       163 a~i~~  167 (172)
                      |.+++
T Consensus        68 ~ii~~   72 (81)
T cd04652          68 CLVGS   72 (81)
T ss_pred             CEECC
Confidence            44443

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=98.43  E-value=3e-06  Score=57.85  Aligned_cols=73  Identities=12%  Similarity=0.095  Sum_probs=54.6

Q ss_pred             CeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEec
Q psy2215          70 NKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLK  149 (172)
Q Consensus        70 n~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~  149 (172)
                      -.|.+.+.|.   +..|+.++.|++++.|+ +   ..|+++|.|++++.|..          ..+++++.||+++.|.  
T Consensus         6 ~~I~~~~~i~---~s~ig~~~~ig~~~~i~-~---s~i~~~~~i~~~~~i~~----------~~i~~~~~i~~~~~i~--   66 (79)
T cd05787           6 TSIGEGTTIK---NSVIGRNCKIGKNVVID-N---SYIWDDVTIEDGCTIHH----------SIVADGAVIGKGCTIP--   66 (79)
T ss_pred             CEECCCCEEe---ccEECCCCEECCCCEEe-C---cEEeCCCEECCCCEEeC----------cEEcCCCEECCCCEEC--
Confidence            3445556554   35778888888888887 3   67888888888888863          3458888888888888  


Q ss_pred             CCCeEECCCceeC
Q psy2215         150 SPFAQIYSYIIAP  162 (172)
Q Consensus       150 ~pga~IGs~v~ig  162 (172)
                       +++.|++++.+|
T Consensus        67 -~~~~v~~~~~ig   78 (79)
T cd05787          67 -PGSLISFGVVIG   78 (79)
T ss_pred             -CCCEEeCCcEeC
Confidence             778888887665

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>PLN02357 serine acetyltransferase

Probab=98.43  E-value=1.4e-06  Score=78.22  Aligned_cols=79  Identities=11%  Similarity=-0.026  Sum_probs=49.5

Q ss_pred             eEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCC----Cce-EEeeCCCeEECCCcEEEecCCCeEECCC
Q psy2215          84 IVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFA----KGF-LVYPGSTVYLVFTASVRLKSPFAQIYSY  158 (172)
Q Consensus        84 I~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~----~g~-~~~pGd~V~IG~navI~i~~pga~IGs~  158 (172)
                      +.|+.++.|++++.|... ..+.||++|.||++|.|..+...-.    .+. ...+||+|+||+||.|.   .+++||++
T Consensus       227 vdI~p~a~IG~Gv~Idh~-~giVIGe~avIGdnV~I~~gVtIGg~g~~~g~~~piIGd~V~IGagA~Il---ggV~IGdg  302 (360)
T PLN02357        227 VDIHPGAKIGQGILLDHA-TGVVIGETAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCIL---GNITIGEG  302 (360)
T ss_pred             eeeCCCCEECCCeEECCC-CceEECCCCEECCCCEEeCCceecCccccCCccCceeCCCeEECCceEEE---CCeEECCC
Confidence            566777777777766642 2255555555555555554432110    111 13459999999999998   78889999


Q ss_pred             ceeCCeEE
Q psy2215         159 IIAPCPLH  166 (172)
Q Consensus       159 v~iga~i~  166 (172)
                      +.+|+...
T Consensus       303 a~IGAgSV  310 (360)
T PLN02357        303 AKIGAGSV  310 (360)
T ss_pred             CEECCCCE
Confidence            88777544

>PRK10092 maltose O-acetyltransferase; Provisional

Probab=98.42  E-value=1.8e-06  Score=70.29  Aligned_cols=67  Identities=16%  Similarity=0.150  Sum_probs=53.7

Q ss_pred             eecCCeEecccceEECCCeEECCCcEEcCC---------------CcceEECCCCeeCCCCEEccCCccCCCceEEeeCC
Q psy2215          72 VSRKSLVAGAQNIVLTGKVIIQCDAVLRGD---------------LANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGS  136 (172)
Q Consensus        72 Is~~a~I~G~~nI~Igg~v~I~~~avIrGd---------------l~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd  136 (172)
                      +...+.|.....|+||+++.|+++|.|...               ..++.||++|.||.+|+|.+.         +.+|+
T Consensus        82 in~~~~i~d~~~I~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~g---------v~IG~  152 (183)
T PRK10092         82 ANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGGRAVINPG---------VTIGD  152 (183)
T ss_pred             ECCceEEecCceEEECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCCcEECCCCEECCC---------CEECC
Confidence            344556655556899999999999999632               137999999999999999987         45688


Q ss_pred             CeEECCCcEEE
Q psy2215         137 TVYLVFTASVR  147 (172)
Q Consensus       137 ~V~IG~navI~  147 (172)
                      ++.||++++|.
T Consensus       153 ~~vIgagsvV~  163 (183)
T PRK10092        153 NVVVASGAVVT  163 (183)
T ss_pred             CCEECCCCEEc
Confidence            88888888888

>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase

Probab=98.42  E-value=3.5e-06  Score=58.70  Aligned_cols=62  Identities=8%  Similarity=-0.011  Sum_probs=36.1

Q ss_pred             eEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECCCceeC
Q psy2215          84 IVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAP  162 (172)
Q Consensus        84 I~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~ig  162 (172)
                      ..|++++.|+++++|.    +..|+++|.|++++.|...          ..++++.||+++.+.   .++.||+++.++
T Consensus        18 ~~Ig~~~~Ig~~~~i~----~sii~~~~~i~~~~~i~~s----------ii~~~~~v~~~~~~~---~~~~ig~~~~i~   79 (80)
T cd05824          18 VVIGPNVTIGDGVRLQ----RCVILSNSTVRDHSWVKSS----------IVGWNSTVGRWTRLE---NVTVLGDDVTIK   79 (80)
T ss_pred             CEECCCCEECCCcEEe----eeEEcCCCEECCCCEEeCC----------EEeCCCEECCCcEEe---cCEEECCceEEC
Confidence            3444444444444443    2455555555555555542          347778888888777   447777777655

It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK10191 putative acyl transferase; Provisional

Probab=98.42  E-value=2.5e-06  Score=67.48  Aligned_cols=55  Identities=16%  Similarity=0.155  Sum_probs=36.2

Q ss_pred             eEECCCeEECCCcEEcCC----CcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215          84 IVLTGKVIIQCDAVLRGD----LANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR  147 (172)
Q Consensus        84 I~Igg~v~I~~~avIrGd----l~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~  147 (172)
                      +.||+++.|+++++|...    ...+.||++|.||+++.|.++         +.+||+++||++++|.
T Consensus        68 ~~IGd~~~I~h~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~~~---------v~IG~~~~Igags~V~  126 (146)
T PRK10191         68 VVAGDDFTIRHGVTIGNRGADNMACPHIGNGVELGANVIILGD---------ITIGNNVTVGAGSVVL  126 (146)
T ss_pred             cEECCCCEECCCCEECCCCcCCCCCCEECCCcEEcCCCEEeCC---------CEECCCCEECCCCEEC
Confidence            444445555555555311    123577777888878777776         5569999999999888

>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase

Probab=98.42  E-value=1.7e-06  Score=60.30  Aligned_cols=59  Identities=14%  Similarity=-0.027  Sum_probs=41.0

Q ss_pred             CCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECCCceeC
Q psy2215          87 TGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAP  162 (172)
Q Consensus        87 gg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~ig  162 (172)
                      +.++.|++++.|.++   +.||++|.|+++|.|...          ..++++.|++++.|.    ++.+++++.++
T Consensus         3 ~~~~~I~~~~~i~~~---~~Ig~~~~Ig~~~~i~~s----------ii~~~~~i~~~~~i~----~sii~~~~~v~   61 (80)
T cd05824           3 DPSAKIGKTAKIGPN---VVIGPNVTIGDGVRLQRC----------VILSNSTVRDHSWVK----SSIVGWNSTVG   61 (80)
T ss_pred             CCCCEECCCCEECCC---CEECCCCEECCCcEEeee----------EEcCCCEECCCCEEe----CCEEeCCCEEC
Confidence            456667777776655   677777888777777753          358899999999998    45555444433

It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK10502 putative acyl transferase; Provisional

Probab=98.41  E-value=2e-06  Score=69.40  Aligned_cols=71  Identities=20%  Similarity=0.196  Sum_probs=58.7

Q ss_pred             cCCeeecCCeEecccceEECCCeEECCCcEEcCC------------CcceEECCCCeeCCCCEEccCCccCCCceEEeeC
Q psy2215          68 SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGD------------LANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPG  135 (172)
Q Consensus        68 ~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGd------------l~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pG  135 (172)
                      ++..|.+.+.|.....++||+++.|++++.|...            ..++.||++|.||.+++|.+.         +.+|
T Consensus        76 ~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~Igd~~~Ig~~a~I~~G---------v~Ig  146 (182)
T PRK10502         76 DYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAPIVIGEGCWLAADVFVAPG---------VTIG  146 (182)
T ss_pred             CCeEECCCceecccCceEECCCcEECCCeEEECCCCCCcCCCcccccCCEEEcCCcEEcCCCEEcCC---------CEEC
Confidence            4455666777776668999999999999998532            137999999999999999998         5579


Q ss_pred             CCeEECCCcEEE
Q psy2215         136 STVYLVFTASVR  147 (172)
Q Consensus       136 d~V~IG~navI~  147 (172)
                      +++.||+++++.
T Consensus       147 ~~~vIga~svV~  158 (182)
T PRK10502        147 SGAVVGARSSVF  158 (182)
T ss_pred             CCCEECCCCEEe
Confidence            999999999988

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.41  E-value=1.4e-06  Score=78.54  Aligned_cols=60  Identities=20%  Similarity=0.308  Sum_probs=35.5

Q ss_pred             eecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215          72 VSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR  147 (172)
Q Consensus        72 Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~  147 (172)
                      |...+.|.+  ++.||+++.|+++|+|++    ..||++|.|+++|+|...          .+|+++.||++++|.
T Consensus       277 I~~~~~I~~--~~~Ig~~~~I~~~~~I~~----~~Ig~~~~I~~~~~i~~~----------~i~~~~~ig~~~~i~  336 (459)
T PRK14355        277 IYPGVCISG--DTRIGEGCTIEQGVVIKG----CRIGDDVTVKAGSVLEDS----------VVGDDVAIGPMAHLR  336 (459)
T ss_pred             EeCCcEEeC--CCEECCCCEECCCCEEeC----CEEcCCCEECCCeEEeCC----------EECCCCEECCCCEEC
Confidence            333444433  567777777777777753    677777777777766432          235555555555444

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.40  E-value=1.5e-06  Score=79.39  Aligned_cols=79  Identities=16%  Similarity=0.061  Sum_probs=51.4

Q ss_pred             cceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccC-----CccCCCce--EEeeCCCeEECCCcEEEecCCCeE
Q psy2215          82 QNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPP-----FKKFAKGF--LVYPGSTVYLVFTASVRLKSPFAQ  154 (172)
Q Consensus        82 ~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~-----~~~~~~g~--~~~pGd~V~IG~navI~i~~pga~  154 (172)
                      .++.||+++.|+++|+|.++   +.||++|.|+++|+|+..     ...-+...  ....|+++.||+++.|.   +++.
T Consensus       269 ~~~~Ig~~~~I~~~~~I~~~---v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~---~~~~  342 (481)
T PRK14358        269 DTVTLGRDVTIEPGVLLRGQ---TRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLR---PGTV  342 (481)
T ss_pred             CCcEECCCCEEeCCcEEeCC---cEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEc---CCcE
Confidence            46788899999999999887   777777777777666432     11000000  02347788888887777   6677


Q ss_pred             ECCCceeCCeEE
Q psy2215         155 IYSYIIAPCPLH  166 (172)
Q Consensus       155 IGs~v~iga~i~  166 (172)
                      ||+++.++..++
T Consensus       343 Ig~~~~Ig~~~~  354 (481)
T PRK14358        343 LGEGVHIGNFVE  354 (481)
T ss_pred             ECCCCEECCCEE
Confidence            777777665433

>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

Probab=98.39  E-value=4.5e-06  Score=57.46  Aligned_cols=61  Identities=16%  Similarity=0.157  Sum_probs=48.0

Q ss_pred             ECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE--ecCCCeEECCCce
Q psy2215          86 LTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR--LKSPFAQIYSYII  160 (172)
Q Consensus        86 Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~--i~~pga~IGs~v~  160 (172)
                      |+.++.|++++.|. +   ..||++|.|++++.|...          .++++++||++|.|.  ++++++.|++++.
T Consensus         2 ig~~~~I~~~~~i~-~---s~ig~~~~Ig~~~~i~~s----------vi~~~~~i~~~~~i~~svv~~~~~i~~~~~   64 (79)
T cd03356           2 IGESTVIGENAIIK-N---SVIGDNVRIGDGVTITNS----------ILMDNVTIGANSVIVDSIIGDNAVIGENVR   64 (79)
T ss_pred             ccCCcEECCCCEEe-C---CEECCCCEECCCCEEeCC----------EEeCCCEECCCCEEECCEECCCCEECCCCE
Confidence            56788888888886 3   789999999999999863          358999999999998  5556666666555

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.37  E-value=1.6e-06  Score=77.51  Aligned_cols=79  Identities=13%  Similarity=0.139  Sum_probs=40.2

Q ss_pred             eeecCCeEecc----cceEECCCeEECCCcEEcCC-------------CcceEECCCCeeCCCCEEccCCccCCCceEEe
Q psy2215          71 KVSRKSLVAGA----QNIVLTGKVIIQCDAVLRGD-------------LANIRTGRYCIISKGVVIRPPFKKFAKGFLVY  133 (172)
Q Consensus        71 ~Is~~a~I~G~----~nI~Igg~v~I~~~avIrGd-------------l~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~  133 (172)
                      .+...+.|.|.    .++.||.++.|+++|+|++-             +.++.||++|.||+++.|++.         ..
T Consensus       271 ~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~---------~~  341 (456)
T PRK14356        271 TIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPG---------AV  341 (456)
T ss_pred             EECCCCEEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCC---------CE
Confidence            44444555442    14566666666666665531             002334444444444444433         23


Q ss_pred             eCCCeEECCCcEEE--ecCCCeEECCC
Q psy2215         134 PGSTVYLVFTASVR--LKSPFAQIYSY  158 (172)
Q Consensus       134 pGd~V~IG~navI~--i~~pga~IGs~  158 (172)
                      +|+++.||+++.+.  ++++++.+++.
T Consensus       342 ig~~~~ig~~~~i~~~~i~~~~~i~~~  368 (456)
T PRK14356        342 LEEGARVGNFVEMKKAVLGKGAKANHL  368 (456)
T ss_pred             ECCCCEecCCceeeeeEecCCcEeccc
Confidence            47777777777776  55555444433

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.36  E-value=1.8e-06  Score=77.64  Aligned_cols=46  Identities=26%  Similarity=0.447  Sum_probs=33.4

Q ss_pred             CCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEc
Q psy2215          69 GNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIR  120 (172)
Q Consensus        69 gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~  120 (172)
                      +..|.+.+.|.|  ++.||.++.|+++|+|+ +   ..||++|.|++++.|.
T Consensus       271 ~~~I~~~~~i~~--~v~ig~~~~I~~~~~i~-~---~~ig~~~~I~~~~~i~  316 (456)
T PRK09451        271 DVEIDTNVIIEG--NVTLGNRVKIGAGCVLK-N---CVIGDDCEISPYSVVE  316 (456)
T ss_pred             CCEEcCCeEEec--CcEECCCCEECCCceEe-c---CEEcCCCEEcCCEEEe
Confidence            445666777766  67888889998888886 3   6677777776666665

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.36  E-value=2.1e-06  Score=76.60  Aligned_cols=55  Identities=16%  Similarity=0.145  Sum_probs=28.9

Q ss_pred             eEECCCeEECCCcEEcCCC--cceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215          84 IVLTGKVIIQCDAVLRGDL--ANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR  147 (172)
Q Consensus        84 I~Igg~v~I~~~avIrGdl--~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~  147 (172)
                      ..|++++.|+++|+|....  .++.||++|.|+++++|++.         ..+|++|.||++|.|.
T Consensus       281 ~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~---------~~ig~~~~Ig~~~~i~  337 (446)
T PRK14353        281 VVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPG---------AELGEGAKVGNFVEVK  337 (446)
T ss_pred             CEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEecc---------ceecCCeEEcCceEEe
Confidence            3444444444444443321  13556666666666666544         3347777777777665

>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

Probab=98.35  E-value=4.5e-06  Score=61.48  Aligned_cols=76  Identities=17%  Similarity=0.097  Sum_probs=50.2

Q ss_pred             cCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE--ecCC
Q psy2215          74 RKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR--LKSP  151 (172)
Q Consensus        74 ~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~--i~~p  151 (172)
                      +.+.|.   +..||.++.|+ ++.|+    ...||++|.|++++.|...          .+++++.||++|.+.  ++.+
T Consensus         6 ~~~~i~---~s~Ig~~~~I~-~~~I~----~svi~~~~~Ig~~~~I~~s----------iI~~~~~Ig~~~~i~~siig~   67 (104)
T cd04651           6 RRGEVK---NSLVSEGCIIS-GGTVE----NSVLFRGVRVGSGSVVEDS----------VIMPNVGIGRNAVIRRAIIDK   67 (104)
T ss_pred             CCCEEE---eEEECCCCEEc-CeEEE----eCEEeCCCEECCCCEEEEe----------EEcCCCEECCCCEEEeEEECC
Confidence            345443   34566677776 66665    2678888888888888753          358899999999998  4455


Q ss_pred             CeEECCCceeCCeEEe
Q psy2215         152 FAQIYSYIIAPCPLHV  167 (172)
Q Consensus       152 ga~IGs~v~iga~i~~  167 (172)
                      ++.|++++.++...++
T Consensus        68 ~~~Ig~~~~v~~~~~~   83 (104)
T cd04651          68 NVVIPDGVVIGGDPEE   83 (104)
T ss_pred             CCEECCCCEECCCccc
Confidence            5555555554444333

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.35  E-value=2.9e-06  Score=77.54  Aligned_cols=70  Identities=14%  Similarity=0.044  Sum_probs=37.5

Q ss_pred             eeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEcc-----CCccCCCce----EEeeCCCeEEC
Q psy2215          71 KVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRP-----PFKKFAKGF----LVYPGSTVYLV  141 (172)
Q Consensus        71 ~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p-----~~~~~~~g~----~~~pGd~V~IG  141 (172)
                      .|...+.|.|  ++.||.++.|+++|+|. +   ..||++|.|+++++|..     .... ..+.    .+.+|+++.||
T Consensus       278 ~I~~~~~I~~--~v~Ig~~~~I~~~~~i~-~---svI~~~~~I~~~~~i~~~~ig~~~~i-g~~~~i~~~~~Ig~~~~Ig  350 (481)
T PRK14358        278 TIEPGVLLRG--QTRVADGVTIGAYSVVT-D---SVLHEGAVIKPHSVLEGAEVGAGSDV-GPFARLRPGTVLGEGVHIG  350 (481)
T ss_pred             EEeCCcEEeC--CcEECCCCEECCCCEEe-e---eEECCCCEEeecceecCCeEeCceEE-CCccEEcCCcEECCCCEEC
Confidence            4445555555  46677777777777774 2   45666666655554432     1110 0000    03347777777


Q ss_pred             CCcEEE
Q psy2215         142 FTASVR  147 (172)
Q Consensus       142 ~navI~  147 (172)
                      +++.|.
T Consensus       351 ~~~~i~  356 (481)
T PRK14358        351 NFVETK  356 (481)
T ss_pred             CCEEEC
Confidence            766654

>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]

Probab=98.32  E-value=3.4e-06  Score=70.03  Aligned_cols=81  Identities=16%  Similarity=0.025  Sum_probs=50.4

Q ss_pred             eEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccC----CCceEE-eeCCCeEECCCcEEEecCCCeEECCC
Q psy2215          84 IVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF----AKGFLV-YPGSTVYLVFTASVRLKSPFAQIYSY  158 (172)
Q Consensus        84 I~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~----~~g~~~-~pGd~V~IG~navI~i~~pga~IGs~  158 (172)
                      +.|+..+.|+++..|.= -..|.||+-+.||+||.|+.....=    .++-.. .+|++|.||++|.|.   .+.+||++
T Consensus        68 ieIhp~A~IG~g~fIdH-g~GvVIgeta~IGddv~I~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkIL---G~I~IGd~  143 (194)
T COG1045          68 IEIHPGAKIGRGLFIDH-GTGVVIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKIL---GNIEIGDN  143 (194)
T ss_pred             eeeCCCCeECCceEEcC-CceEEEcceeEECCCeEEEcceEecCCCCcCCCCCCccCCCeEECCCCEEE---cceEECCC
Confidence            66677777777666651 1236666666666666655443210    111101 338999999999888   77888888


Q ss_pred             ceeCCeEEec
Q psy2215         159 IIAPCPLHVH  168 (172)
Q Consensus       159 v~iga~i~~~  168 (172)
                      +.+||+..-+
T Consensus       144 akIGA~sVVl  153 (194)
T COG1045         144 AKIGAGSVVL  153 (194)
T ss_pred             CEECCCceEc
Confidence            8888776544

>KOG1461|consensus

Probab=98.31  E-value=1.5e-06  Score=82.40  Aligned_cols=67  Identities=12%  Similarity=0.012  Sum_probs=58.3

Q ss_pred             ceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECCCceeC
Q psy2215          83 NIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAP  162 (172)
Q Consensus        83 nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~ig  162 (172)
                      |-.||.+|.|+.+++|.+    ..|+++|.||+||.|+..          .++|+|.|+++|++.   ||+.||.+|++|
T Consensus       350 NSVIG~~c~IgsN~~I~~----S~iw~~v~Igdnc~I~~a----------ii~d~v~i~~~~~l~---~g~vl~~~VVv~  412 (673)
T KOG1461|consen  350 NSVIGANCRIGSNVRIKN----SFIWNNVTIGDNCRIDHA----------IICDDVKIGEGAILK---PGSVLGFGVVVG  412 (673)
T ss_pred             cceecCCCEecCceEEee----eeeecCcEECCCceEeee----------EeecCcEeCCCcccC---CCcEEeeeeEeC
Confidence            558889999999999986    789999999999999974          359999999999999   999999999977


Q ss_pred             CeEE
Q psy2215         163 CPLH  166 (172)
Q Consensus       163 a~i~  166 (172)
                      ....
T Consensus       413 ~~~~  416 (673)
T KOG1461|consen  413 RNFV  416 (673)
T ss_pred             CCcc
Confidence            6543

>KOG4042|consensus

Probab=98.31  E-value=1.9e-06  Score=69.84  Aligned_cols=93  Identities=22%  Similarity=0.186  Sum_probs=68.2

Q ss_pred             eeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCcc----CCCc----------eEE----
Q psy2215          71 KVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKK----FAKG----------FLV----  132 (172)
Q Consensus        71 ~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~----~~~g----------~~~----  132 (172)
                      -+.-++.|.|  .|+|+++++++|.+++..+..||.||++|+|.|-++|+.....    -+.+          |.+    
T Consensus        16 vVCvEs~irG--dvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s   93 (190)
T KOG4042|consen   16 VVCVESDIRG--DVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKS   93 (190)
T ss_pred             EEEEeccccc--ceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechh
Confidence            3445666777  6999999999999999999999999999999999999852210    0112          111    


Q ss_pred             ---eeCCCeEECCCcEEEecCCCeEECCCceeCC--eEEec
Q psy2215         133 ---YPGSTVYLVFTASVRLKSPFAQIYSYIIAPC--PLHVH  168 (172)
Q Consensus       133 ---~pGd~V~IG~navI~i~~pga~IGs~v~iga--~i~~~  168 (172)
                         +.||+-.|+..|.+.   +|+++-++|.+||  +++.+
T Consensus        94 ~A~kvGd~NVieskayvg---~gv~vssgC~vGA~c~v~~~  131 (190)
T KOG4042|consen   94 SAKKVGDRNVIESKAYVG---DGVSVSSGCSVGAKCTVFSH  131 (190)
T ss_pred             hhhhhcCcceEeeeeEec---CCcEEcCCceeccceEEecc
Confidence               228888888888888   8888888888554  44444

>KOG3121|consensus

Probab=98.27  E-value=1.1e-06  Score=70.67  Aligned_cols=76  Identities=14%  Similarity=0.294  Sum_probs=55.6

Q ss_pred             cCCeee-cCCeEecc-cceEECCCeEECCCcEEcCCCc---------ceEECCCCeeCCCCEEccCCccCCCceEEeeCC
Q psy2215          68 SGNKVS-RKSLVAGA-QNIVLTGKVIIQCDAVLRGDLA---------NIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGS  136 (172)
Q Consensus        68 ~gn~Is-~~a~I~G~-~nI~Igg~v~I~~~avIrGdl~---------~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd  136 (172)
                      .|..|- ..+.|.|. .|+.+|..+++.++++||....         |+.||+++.|+|+|++....-    |--+..|.
T Consensus        37 nGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqI----gsyVh~Gk  112 (184)
T KOG3121|consen   37 NGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQI----GSYVHLGK  112 (184)
T ss_pred             cCcEEEeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhh----eeeeEecc
Confidence            344433 35677885 8999999999999999997643         999999999999999987631    11134466


Q ss_pred             CeEECCCcEEE
Q psy2215         137 TVYLVFTASVR  147 (172)
Q Consensus       137 ~V~IG~navI~  147 (172)
                      ++.||.+|+++
T Consensus       113 naviGrrCVlk  123 (184)
T KOG3121|consen  113 NAVIGRRCVLK  123 (184)
T ss_pred             ceeEcCceEhh
Confidence            66666666665

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.26  E-value=5.2e-06  Score=74.03  Aligned_cols=31  Identities=3%  Similarity=-0.156  Sum_probs=23.9

Q ss_pred             EeeCCCeEECCCcEEEecCCCeEECCCceeCCeE
Q psy2215         132 VYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCPL  165 (172)
Q Consensus       132 ~~pGd~V~IG~navI~i~~pga~IGs~v~iga~i  165 (172)
                      +.+||+|+||.+++|.   ++++||+++.+++..
T Consensus       391 ~~Ig~~~~iG~~~~i~---~~~~ig~~~~v~~~~  421 (450)
T PRK14360        391 TVIGDRSKTGANSVLV---APITLGEDVTVAAGS  421 (450)
T ss_pred             cEeCCCeEeCCCCEEe---CCcEECCCCEECCCC
Confidence            4558888888888888   888888888865543

>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=98.23  E-value=4.6e-06  Score=75.56  Aligned_cols=114  Identities=16%  Similarity=0.112  Sum_probs=79.9

Q ss_pred             ceeeeccceecccCCchhhhhhcccccc-CCee---ecCCeEecc----c-----ceEECCCeEECCCcEEcCCCcceEE
Q psy2215          41 AVDFLSRGWWFESKSSHKILVYSGAVAS-GNKV---SRKSLVAGA----Q-----NIVLTGKVIIQCDAVLRGDLANIRT  107 (172)
Q Consensus        41 ~~~~~~~g~W~D~~~p~~Ll~~~~~~~~-gn~I---s~~a~I~G~----~-----nI~Igg~v~I~~~avIrGdl~~V~I  107 (172)
                      +..+..+|+|.|+|+-....++|=..++ .+..   .++-.|+..    +     +-..-.++.|..||+|.|.+.+-.|
T Consensus       235 v~AY~f~gYw~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~~~~~pPak~~~~s~v~nSLv~~GciI~G~V~nSVL  314 (393)
T COG0448         235 VYAYEFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEVSNSLVAGGCIISGTVENSVL  314 (393)
T ss_pred             EEEEeccchhhhcccHHHHHHhhHHhcCCCCcccccCCCCceeecCCCCCCceEecCceEeeeeeeCCeEEEeEEEeeEE
Confidence            6778899999999998876655543333 1111   011122220    0     0011356788999999998778888


Q ss_pred             CCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE--ecCCCeEECCCceeCCe
Q psy2215         108 GRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR--LKSPFAQIYSYIIAPCP  164 (172)
Q Consensus       108 G~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~--i~~pga~IGs~v~iga~  164 (172)
                      ++++.|+++|+|..+         + +-.+|.||+||+|+  |++.+|.|++++.++..
T Consensus       315 ~~~v~I~~gs~i~~s---------v-im~~~~IG~~~~l~~aIIDk~v~I~~g~~i~~~  363 (393)
T COG0448         315 FRGVRIGKGSVIENS---------V-IMPDVEIGEGAVLRRAIIDKNVVIGEGVVIGGD  363 (393)
T ss_pred             ecCeEECCCCEEEee---------E-EeCCcEECCCCEEEEEEeCCCcEeCCCcEEcCC
Confidence            888888888888875         2 23469999999999  88899999999887655

>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional

Probab=98.22  E-value=8.9e-06  Score=70.51  Aligned_cols=64  Identities=14%  Similarity=0.101  Sum_probs=44.6

Q ss_pred             eEECCCeEECCCcEEcCCC-----cceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECCC
Q psy2215          84 IVLTGKVIIQCDAVLRGDL-----ANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSY  158 (172)
Q Consensus        84 I~Igg~v~I~~~avIrGdl-----~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~  158 (172)
                      ..||+++.|+.++.|.|-+     .++.||++|.||.+|+|.+.         +.+|+++.||++++|.   +++.|+++
T Consensus       151 a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~G---------v~IGdgavIgag~vV~---~gt~I~~~  218 (272)
T PRK11830        151 AQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEG---------VIVEEGSVLGMGVFLG---QSTKIYDR  218 (272)
T ss_pred             CEECCCcEECCCccCCCCccccCcCCeEEcCCCEECCCCEEcCC---------CEECCCCEEcCCCEEc---CCeEECcC
Confidence            3444444444444444321     16889999999999888876         4568899999999888   78888864


Q ss_pred             c
Q psy2215         159 I  159 (172)
Q Consensus       159 v  159 (172)
                      +
T Consensus       219 ~  219 (272)
T PRK11830        219 E  219 (272)
T ss_pred             C
Confidence            3

>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH

Probab=98.19  E-value=9.4e-06  Score=64.81  Aligned_cols=51  Identities=14%  Similarity=0.147  Sum_probs=28.0

Q ss_pred             eEECCCCeeCCCCEEccCCccCCCc--eEEeeCCCeEECCCcEEEecCCCeEECCCceeCC
Q psy2215         105 IRTGRYCIISKGVVIRPPFKKFAKG--FLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPC  163 (172)
Q Consensus       105 V~IG~~c~Ig~navI~p~~~~~~~g--~~~~pGd~V~IG~navI~i~~pga~IGs~v~iga  163 (172)
                      +.||.+|.|++++.|...   +.++  -++.+|++|+||++|+|     ++.||+++.+|+
T Consensus        48 a~Ighd~~IG~~~~I~~~---l~G~~~~pV~IG~~~~IG~ga~I-----gv~IG~~~vIGa  100 (147)
T cd04649          48 VIVGKGSDVGGGASIMGT---LSGGGNNVISIGKRCLLGANSGI-----GISLGDNCIVEA  100 (147)
T ss_pred             EEECCCCEECCCCEEEEE---CCCCcccCEEECCCCEECCCCEE-----eEEECCCCEECC
Confidence            455555555555555511   1111  12455788888888776     366666666544

THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.

>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function

Probab=98.19  E-value=8.1e-06  Score=78.39  Aligned_cols=81  Identities=14%  Similarity=0.133  Sum_probs=48.3

Q ss_pred             cCCeeecCCeEec-----ccceEECCCeEECCCcEEcCC--------CcceEECCCCeeCCCCEEccCCccCCCceEEee
Q psy2215          68 SGNKVSRKSLVAG-----AQNIVLTGKVIIQCDAVLRGD--------LANIRTGRYCIISKGVVIRPPFKKFAKGFLVYP  134 (172)
Q Consensus        68 ~gn~Is~~a~I~G-----~~nI~Igg~v~I~~~avIrGd--------l~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~p  134 (172)
                      -|.+|.+++.|..     ...++||+++.|+++|.|.+.        ..+|+||++|.||.+|+|.++         +.+
T Consensus       111 lGa~IG~~v~I~~~~~~~~~li~IG~~~~I~~~v~l~~~~~~~~~l~~g~i~IG~~~~IG~~s~I~~g---------~~I  181 (695)
T TIGR02353       111 LGAKIGKGVDIGSLPPVCTDLLTIGAGTIVRKEVMLLGYRAERGRLHTGPVTLGRDAFIGTRSTLDID---------TSI  181 (695)
T ss_pred             cCCEECCCCEEEeeecccCCceEECCCCEECCCCEEEcccCCCCceeecCcEECCCcEECCCCEEcCC---------CEE
Confidence            4455555554433     345667777777777776542        125677777777777777666         445


Q ss_pred             CCCeEECCCcEEEecCCCeEECCCce
Q psy2215         135 GSTVYLVFTASVRLKSPFAQIYSYII  160 (172)
Q Consensus       135 Gd~V~IG~navI~i~~pga~IGs~v~  160 (172)
                      ||++.||+++.+.   .+..|.++..
T Consensus       182 gd~a~vgagS~V~---~g~~v~~~~~  204 (695)
T TIGR02353       182 GDGAQLGHGSALQ---GGQSIPDGER  204 (695)
T ss_pred             CCCCEECCCCEec---CCcccCCCCE
Confidence            7777777777666   4344444444

This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.

>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=98.18  E-value=1.1e-05  Score=71.65  Aligned_cols=90  Identities=10%  Similarity=0.101  Sum_probs=55.7

Q ss_pred             cccccCCeeecCCeEecccceEECCCeEECCCcEEcCCCc-------------ceEECCCCeeCCCCEEccCCccCCCc-
Q psy2215          64 GAVASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLA-------------NIRTGRYCIISKGVVIRPPFKKFAKG-  129 (172)
Q Consensus        64 ~~~~~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~-------------~V~IG~~c~Ig~navI~p~~~~~~~g-  129 (172)
                      +....|.+|...+.|..  +..||++++|+++++|.-+..             .+.||.+|.||.+|.|+..   ++++ 
T Consensus       173 yVvp~gVrI~~sa~Vr~--gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasIg~t---LsGg~  247 (341)
T TIGR03536       173 YVVPKGVRIADTARVRL--GAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCSTMGT---LSGGG  247 (341)
T ss_pred             eEccCCcEEcCCCeEcC--CcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEEeEE---EeCCC
Confidence            34456666766666643  466777777777666653211             4567777777777777432   2222 


Q ss_pred             -eEEeeCCCeEECCCcEEEecCCCeEECCCceeCC
Q psy2215         130 -FLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPC  163 (172)
Q Consensus       130 -~~~~pGd~V~IG~navI~i~~pga~IGs~v~iga  163 (172)
                       ..+.+|++|+||.||.|     +..||+++++|+
T Consensus       248 ~~~V~IGe~~lIGagA~I-----GI~IGd~~iIGA  277 (341)
T TIGR03536       248 NIVISVGEGCLLGANAGI-----GIPLGDRCTVEA  277 (341)
T ss_pred             ceeEEECCCcEECCCCEE-----eeEECCCCEECC
Confidence             22566899999999987     566666666444

2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.

>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family

Probab=98.18  E-value=6e-06  Score=68.18  Aligned_cols=59  Identities=14%  Similarity=0.116  Sum_probs=30.0

Q ss_pred             eecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215          72 VSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR  147 (172)
Q Consensus        72 Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~  147 (172)
                      |++.+.|.+   ..||.++.|+++|+|+ +   +.||++|.|++++.|..          ..+|++|.|++++.|.
T Consensus        11 I~~~a~i~~---~~IG~~~~Ig~~a~I~-~---s~IG~~s~I~~~~~i~~----------~~IG~~~~I~~~v~I~   69 (204)
T TIGR03308        11 LHPTAELTE---SKLGRYTEIGERTRLR-E---VALGDYSYVMRDCDIIY----------TTIGKFCSIAAMVRIN   69 (204)
T ss_pred             ECCCcEEec---cEeCCCcEECCCcEEe-C---CEECCCCEECCCcEEee----------eEECCCCEECCCCEEC
Confidence            444455532   3555555555555554 2   55555555555555542          2235555555555544

This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.

>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine

Probab=98.16  E-value=2.2e-05  Score=56.88  Aligned_cols=56  Identities=21%  Similarity=0.205  Sum_probs=39.1

Q ss_pred             ceEECCCeEECCCcEEcCCC-----cceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215          83 NIVLTGKVIIQCDAVLRGDL-----ANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR  147 (172)
Q Consensus        83 nI~Igg~v~I~~~avIrGdl-----~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~  147 (172)
                      ++.|++++.|+++++|..+.     .++.||++|.|++++.+.+.         ..+||+++|+++++|.
T Consensus        28 ~~~Ig~~~~i~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~---------~~Ig~~~~i~~~~~i~   88 (101)
T cd03354          28 TAVIGDNCTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGN---------ITIGDNVKIGANAVVT   88 (101)
T ss_pred             CCEECCCCEEcCCCEECCCccCCcCCCCEECCCcEEcCCCEEECc---------CEECCCCEECCCCEEC
Confidence            45666666666666665442     25678888888888888765         3468888898888888

This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.

>PRK11132 cysE serine acetyltransferase; Provisional

Probab=98.16  E-value=1.2e-05  Score=69.74  Aligned_cols=56  Identities=16%  Similarity=0.164  Sum_probs=40.0

Q ss_pred             ceEECCCeEECCCcEEcCCC-----------cceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215          83 NIVLTGKVIIQCDAVLRGDL-----------ANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR  147 (172)
Q Consensus        83 nI~Igg~v~I~~~avIrGdl-----------~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~  147 (172)
                      +|.||.++.|+++|.|..++           ...+||++|.||.||+|.++         +.+|+++.||++++|.
T Consensus       161 givIG~~a~IGdnv~I~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~Ilgg---------v~IG~~a~IGAgSvV~  227 (273)
T PRK11132        161 GIVIGETAVIENDVSILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGN---------IEVGRGAKIGAGSVVL  227 (273)
T ss_pred             CeEECCCCEECCCCEEcCCcEEecCcccCCCcCCEECCCcEEcCCCEEcCC---------CEECCCCEECCCCEEC
Confidence            45555555555555554321           13578888888888888877         5679999999999998

>COG1043 LpxA Acyl-[acyl carrier protein]

Probab=98.16  E-value=1.1e-05  Score=69.17  Aligned_cols=62  Identities=15%  Similarity=0.145  Sum_probs=36.4

Q ss_pred             ceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCc--cCCCce-EEeeCCCeEECCCcEEE
Q psy2215          83 NIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFK--KFAKGF-LVYPGSTVYLVFTASVR  147 (172)
Q Consensus        83 nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~--~~~~g~-~~~pGd~V~IG~navI~  147 (172)
                      ++.|++++.|.+.++|.|.   .+||+++.|-+.+.|+....  ++++.- .+.+||+++|-+.++|+
T Consensus        33 ~V~ig~~t~l~shvvv~G~---T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG~~n~IRE~vTi~   97 (260)
T COG1043          33 NVEIGDGTVLKSHVVVEGH---TTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGDNNTIREFVTIH   97 (260)
T ss_pred             CcEECCCcEEcccEEEeCC---eEECCCCEEecccccCCCCcccccCCCceEEEECCCCeEeeEEEEe
Confidence            5667777777777777766   66777777777677764443  223331 12335555555555554

>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.15  E-value=2.6e-05  Score=69.06  Aligned_cols=58  Identities=10%  Similarity=0.027  Sum_probs=41.5

Q ss_pred             ceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECCCceeCCeEE
Q psy2215         104 NIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCPLH  166 (172)
Q Consensus       104 ~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~iga~i~  166 (172)
                      ...||++|.||+++++.....  ..+..+.+||+|+||.||.|.   ++++||+++.+++...
T Consensus       342 d~~Ig~~~~ig~~~~~~~~~~--~~~~~~~ig~~~~ig~~~~i~---~~~~ig~~~~i~~g~~  399 (430)
T PRK14359        342 DCEIDEGTNIGAGTITCNYDG--KKKHKTIIGKNVFIGSDTQLV---APVNIEDNVLIAAGST  399 (430)
T ss_pred             CCEECCCCEECCCceEccccC--ccCcCCEECCCeEEcCCCEEe---CCcEECCCCEECCCCE
Confidence            466777777777766653211  112235679999999999999   9999999999776544

>KOG1462|consensus

Probab=98.14  E-value=3.9e-06  Score=76.11  Aligned_cols=77  Identities=17%  Similarity=0.129  Sum_probs=57.0

Q ss_pred             eEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE--ecCCCeE
Q psy2215          77 LVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR--LKSPFAQ  154 (172)
Q Consensus        77 ~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~--i~~pga~  154 (172)
                      .+.|. ...+++++.|++++.|.    .-.||.+|.||++++|-.+          .+-++|+||+++.|+  |+-++|+
T Consensus       329 ~l~g~-d~iv~~~t~i~~~s~ik----~SviG~nC~Ig~~~~v~nS----------ilm~nV~vg~G~~IensIIg~gA~  393 (433)
T KOG1462|consen  329 ALVGA-DSIVGDNTQIGENSNIK----RSVIGSNCDIGERVKVANS----------ILMDNVVVGDGVNIENSIIGMGAQ  393 (433)
T ss_pred             eccch-hhccCCCceecccceee----eeeecCCccccCCcEEEee----------EeecCcEecCCcceecceecccce
Confidence            55553 34557777777666665    2679999999999998875          236788888888888  6668888


Q ss_pred             ECCCce-eCCeEEec
Q psy2215         155 IYSYII-APCPLHVH  168 (172)
Q Consensus       155 IGs~v~-iga~i~~~  168 (172)
                      ||+++. .+|.|+++
T Consensus       394 Ig~gs~L~nC~Ig~~  408 (433)
T KOG1462|consen  394 IGSGSKLKNCIIGPG  408 (433)
T ss_pred             ecCCCeeeeeEecCC
Confidence            888877 77888776

>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others

Probab=98.10  E-value=1.9e-05  Score=61.98  Aligned_cols=62  Identities=18%  Similarity=0.158  Sum_probs=49.0

Q ss_pred             eEecccceEECCCeEECCCcEEcCC-------------------------------CcceEECCCCeeCCCCEEccCCcc
Q psy2215          77 LVAGAQNIVLTGKVIIQCDAVLRGD-------------------------------LANIRTGRYCIISKGVVIRPPFKK  125 (172)
Q Consensus        77 ~I~G~~nI~Igg~v~I~~~avIrGd-------------------------------l~~V~IG~~c~Ig~navI~p~~~~  125 (172)
                      .+.+...+.||.+|.|++++.|...                               ..++.||++|.||.+|+|.++   
T Consensus        15 ~~~~~~~i~IG~~~~I~~~v~i~~~~~H~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~g---   91 (145)
T cd03349          15 CDVGGDKLSIGKFCSIAPGVKIGLGGNHPTDWVSTYPFYIFGGEWEDDAKFDDWPSKGDVIIGNDVWIGHGATILPG---   91 (145)
T ss_pred             ceEeCCCeEECCCCEECCCCEECCCCCCCCCCccccceEeeccccccccccccccccCCcEECCCCEECCCCEEeCC---
Confidence            3444457899999999999888533                               126889999999999999887   


Q ss_pred             CCCceEEeeCCCeEECCCcEEE
Q psy2215         126 FAKGFLVYPGSTVYLVFTASVR  147 (172)
Q Consensus       126 ~~~g~~~~pGd~V~IG~navI~  147 (172)
                            +.+|+++.||++|+|.
T Consensus        92 ------v~Ig~~~vIgags~V~  107 (145)
T cd03349          92 ------VTIGDGAVIAAGAVVT  107 (145)
T ss_pred             ------CEECCCCEECCCCEEc
Confidence                  4569999999999988

Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.

>PLN02739 serine acetyltransferase

Probab=98.06  E-value=2.5e-05  Score=70.09  Aligned_cols=56  Identities=13%  Similarity=0.144  Sum_probs=39.5

Q ss_pred             ceEECCCeEECCCcEEcCCC-----------cceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215          83 NIVLTGKVIIQCDAVLRGDL-----------ANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR  147 (172)
Q Consensus        83 nI~Igg~v~I~~~avIrGdl-----------~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~  147 (172)
                      ++.||++++|+.+|.|...+           ...+||++|.||.|++|..+         +.+|+++.||+|++|.
T Consensus       225 GVVIG~~avIGdnv~I~~gVTIGg~g~~~g~r~p~IGd~V~IGagA~IlG~---------V~IGd~aiIGAGSVV~  291 (355)
T PLN02739        225 GVVIGETAVIGDRVSILHGVTLGGTGKETGDRHPKIGDGALLGACVTILGN---------ISIGAGAMVAAGSLVL  291 (355)
T ss_pred             ceEECCCCEECCCCEEcCCceeCCcCCcCCCCCcEECCCCEEcCCCEEeCC---------eEECCCCEECCCCEEC
Confidence            45566565555555554221           13678888888888888776         6679999999999998

>PLN02357 serine acetyltransferase

Probab=98.06  E-value=3e-05  Score=69.69  Aligned_cols=56  Identities=13%  Similarity=0.185  Sum_probs=39.5

Q ss_pred             ceEECCCeEECCCcEEcCCC-----------cceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215          83 NIVLTGKVIIQCDAVLRGDL-----------ANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR  147 (172)
Q Consensus        83 nI~Igg~v~I~~~avIrGdl-----------~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~  147 (172)
                      ++.||++++|+++|.|...+           ...+||++|.||.|+.|..+         +.+||++.||++++|.
T Consensus       246 giVIGe~avIGdnV~I~~gVtIGg~g~~~g~~~piIGd~V~IGagA~Ilgg---------V~IGdga~IGAgSVV~  312 (360)
T PLN02357        246 GVVIGETAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGN---------ITIGEGAKIGAGSVVL  312 (360)
T ss_pred             ceEECCCCEECCCCEEeCCceecCccccCCccCceeCCCeEECCceEEECC---------eEECCCCEECCCCEEC
Confidence            45666666666665554331           13677777777777777766         6679999999999998

>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A

Probab=98.06  E-value=6.4e-06  Score=50.24  Aligned_cols=33  Identities=18%  Similarity=0.305  Sum_probs=16.3

Q ss_pred             ceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215         104 NIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR  147 (172)
Q Consensus       104 ~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~  147 (172)
                      |++||++|.||++|.|  +         +.+||+|.|++|++|.
T Consensus         1 pv~IG~~~~ig~~~~i--g---------i~igd~~~i~~g~~I~   33 (34)
T PF14602_consen    1 PVTIGDNCFIGANSTI--G---------ITIGDGVIIGAGVVIT   33 (34)
T ss_dssp             TEEE-TTEEE-TT-EE--T---------SEE-TTEEE-TTEEEE
T ss_pred             CeEECCCEEECccccc--C---------CEEcCCCEECCCCEEc
Confidence            4566666666666665  2         3346666666666654

...

>TIGR01172 cysE serine O-acetyltransferase

Probab=98.05  E-value=4e-05  Score=60.83  Aligned_cols=55  Identities=18%  Similarity=0.170  Sum_probs=38.4

Q ss_pred             eEECCCeEECCCcEEcCCC-----cceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215          84 IVLTGKVIIQCDAVLRGDL-----ANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR  147 (172)
Q Consensus        84 I~Igg~v~I~~~avIrGdl-----~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~  147 (172)
                      ..||+++.|.+++.|.+..     ....||++|.|+++++|..+         +.+||+|+||++++|.
T Consensus        88 ~~IG~~~~I~~~v~ig~~~~~~~~~~~~Ig~~v~Ig~~a~I~~~---------v~IG~~~~Iga~s~V~  147 (162)
T TIGR01172        88 AVIGDDVTIYHGVTLGGTGKEKGKRHPTVGEGVMIGAGAKVLGN---------IEVGENAKIGANSVVL  147 (162)
T ss_pred             CEECCCCEEcCCCEECCCccccCCcCCEECCCcEEcCCCEEECC---------cEECCCCEECCCCEEC
Confidence            4455555555555554321     13578888888888888876         5579999999999988

Cysteine biosynthesis

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=98.04  E-value=1.3e-05  Score=71.22  Aligned_cols=53  Identities=19%  Similarity=0.130  Sum_probs=44.3

Q ss_pred             cEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE--ecCCCeEECCCce
Q psy2215          96 AVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR--LKSPFAQIYSYII  160 (172)
Q Consensus        96 avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~--i~~pga~IGs~v~  160 (172)
                      +.|.|+   +.||++|.|++++.|++.         +.+|++|.||+++.|.  |+|.++.|+++++
T Consensus       256 ~~i~gp---~~ig~~~~i~~~~~i~~~---------~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~  310 (358)
T COG1208         256 AYIIGP---VVIGPGAKIGPGALIGPY---------TVIGEGVTIGNGVEIKNSIIMDNVVIGHGSY  310 (358)
T ss_pred             ceEeCC---EEECCCCEECCCCEECCC---------cEECCCCEECCCcEEEeeEEEcCCEECCCCE
Confidence            566665   889999999999998887         5568899999998888  8888888888877

>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function

Probab=98.04  E-value=2e-05  Score=75.69  Aligned_cols=75  Identities=17%  Similarity=0.072  Sum_probs=47.7

Q ss_pred             ceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCce----EEeeCCCeEECCCcEEEecCCCeEECCC
Q psy2215          83 NIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGF----LVYPGSTVYLVFTASVRLKSPFAQIYSY  158 (172)
Q Consensus        83 nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~----~~~pGd~V~IG~navI~i~~pga~IGs~  158 (172)
                      +..||+++.|+....+..|  .+.||++|.|+++|+|.+.  .+.++.    .+.+||+|+||++|+|.   |+++||++
T Consensus       597 Ga~IG~~v~i~~~~~~~~d--lv~IGd~~~I~~~~~i~~h--~~~~~~~~~~~v~IG~~~~IG~~a~V~---~g~~IGd~  669 (695)
T TIGR02353       597 GVKIGRGVYIDGTDLTERD--LVTIGDDSTLNEGSVIQTH--LFEDRVMKSDTVTIGDGATLGPGAIVL---YGVVMGEG  669 (695)
T ss_pred             CCEECCCeEECCeeccCCC--CeEECCCCEECCCCEEEec--cccccccccCCeEECCCCEECCCCEEC---CCCEECCC
Confidence            3566666666665555544  4678888888888877652  222221    14557777777777777   77777777


Q ss_pred             ceeCCe
Q psy2215         159 IIAPCP  164 (172)
Q Consensus       159 v~iga~  164 (172)
                      +.+|+.
T Consensus       670 a~Ig~~  675 (695)
T TIGR02353       670 SVLGPD  675 (695)
T ss_pred             CEECCC
Confidence            775543

This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

Probab=98.04  E-value=9.3e-06  Score=74.47  Aligned_cols=74  Identities=19%  Similarity=0.209  Sum_probs=47.9

Q ss_pred             eecCCeEecccceEECCCeEECCCcEEcC-----CC--------cceEECCCCeeCCCCEEccCCccCCCceEEeeCCCe
Q psy2215          72 VSRKSLVAGAQNIVLTGKVIIQCDAVLRG-----DL--------ANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTV  138 (172)
Q Consensus        72 Is~~a~I~G~~nI~Igg~v~I~~~avIrG-----dl--------~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V  138 (172)
                      |.+...|.|  ++.||+++.|+++++|+.     +.        ....||++|.|||-+.+||..         .++++|
T Consensus       277 I~p~v~l~G--~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~---------~L~~~~  345 (460)
T COG1207         277 IEPNVILEG--NTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGA---------VLGADV  345 (460)
T ss_pred             EecCcEEee--eEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcC---------cccCCC
Confidence            445667777  678888888888866661     11        134566666666666666663         347778


Q ss_pred             EECCCcEEEecCCCeEECCCce
Q psy2215         139 YLVFTASVRLKSPFAQIYSYII  160 (172)
Q Consensus       139 ~IG~navI~i~~pga~IGs~v~  160 (172)
                      .||..+.+.    .++||.++.
T Consensus       346 hIGNFVEvK----~a~ig~gsK  363 (460)
T COG1207         346 HIGNFVEVK----KATIGKGSK  363 (460)
T ss_pred             eEeeeEEEe----cccccCCcc
Confidence            888777777    666665544

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.04  E-value=4e-05  Score=68.51  Aligned_cols=66  Identities=14%  Similarity=0.199  Sum_probs=34.9

Q ss_pred             eeecCCeEecccceEECCCeEECCCcEEcCCC------------cceEECCCCeeCCCCEEccCCccCCCceEEeeCCCe
Q psy2215          71 KVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDL------------ANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTV  138 (172)
Q Consensus        71 ~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl------------~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V  138 (172)
                      .+.+.+.|.+  ++.||.++.|++++.|.+..            ....||++|.|+++|.|++.         ..+|++|
T Consensus       273 ~i~~~~~i~~--~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~---------~~Ig~~~  341 (458)
T PRK14354        273 VIEPGVVIKG--NTVIGEDCVIGPGSRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPG---------SVIGEEV  341 (458)
T ss_pred             EEeCCeEEec--ceEECCCCEECCCcEEeccEECCCCEEEEEEEeCCEECCCcEECCceEecCC---------CEEeCCc
Confidence            3334444443  45666666666666664210            02345555555555555543         2346666


Q ss_pred             EECCCcEEE
Q psy2215         139 YLVFTASVR  147 (172)
Q Consensus       139 ~IG~navI~  147 (172)
                      .||+++.|.
T Consensus       342 ~i~~~~~i~  350 (458)
T PRK14354        342 KIGNFVEIK  350 (458)
T ss_pred             EECCceEEe
Confidence            666666664

>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=98.03  E-value=4.1e-05  Score=67.71  Aligned_cols=89  Identities=12%  Similarity=0.113  Sum_probs=48.8

Q ss_pred             ccCCeeecCCeEecccceEECCCeEECCCcEEcCCCc-------------ceEECCCCeeCCCCEEccCCccCCCc--eE
Q psy2215          67 ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLA-------------NIRTGRYCIISKGVVIRPPFKKFAKG--FL  131 (172)
Q Consensus        67 ~~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~-------------~V~IG~~c~Ig~navI~p~~~~~~~g--~~  131 (172)
                      ++|-+|...+.+.=  .-.|+++++|++++.|.-+..             .+.||++|.|++++.|...   ++++  .+
T Consensus       151 p~gVRI~~~~rVRl--GAyLGeGtvVm~~a~VN~nAgtIG~~iI~g~I~HdvvIGd~~~IgpGvsI~G~---LsGg~~~p  225 (319)
T TIGR03535       151 PTGVRIGDADRVRL--GAHLAEGTTVMHEGFVNFNAGTLGASMVEGRISAGVVVGDGSDIGGGASIMGT---LSGGGKEV  225 (319)
T ss_pred             CCccEECCCceeee--ccEECCCCEEcCCCEEccCceEecCceEEEEEccCCEECCCCEECCCceecce---ecCCCccc
Confidence            45555544443311  124555555555555543321             3445555555555554331   1112  34


Q ss_pred             EeeCCCeEECCCcEEEecCCCeEECCCceeCCeE
Q psy2215         132 VYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCPL  165 (172)
Q Consensus       132 ~~pGd~V~IG~navI~i~~pga~IGs~v~iga~i  165 (172)
                      +.+|++|+||+||.|     +..||+++++|+..
T Consensus       226 V~IGe~~~IGagA~I-----GI~IGd~~VVGAGa  254 (319)
T TIGR03535       226 ISIGERCLLGANSGL-----GISLGDDCVVEAGL  254 (319)
T ss_pred             EEECCCcEECCCCEE-----CeEECCCCEECCCC
Confidence            677999999999997     67888888866543

Alternate name: tetrahydrodipicolinate N-succinyltransferase.

>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]

Probab=98.02  E-value=2.4e-05  Score=64.98  Aligned_cols=71  Identities=15%  Similarity=0.174  Sum_probs=50.9

Q ss_pred             ccCCeeecCCeE-------ecccceEECCCeEECCCcEEcCCCc-----------ceEECCCCeeCCCCEEccCCccCCC
Q psy2215          67 ASGNKVSRKSLV-------AGAQNIVLTGKVIIQCDAVLRGDLA-----------NIRTGRYCIISKGVVIRPPFKKFAK  128 (172)
Q Consensus        67 ~~gn~Is~~a~I-------~G~~nI~Igg~v~I~~~avIrGdl~-----------~V~IG~~c~Ig~navI~p~~~~~~~  128 (172)
                      ..|-.|++.+.|       +| ..|.||+.+.|+++|.|...+.           .-+||++++||.+|.|-.+      
T Consensus        65 ~~gieIhp~A~IG~g~fIdHg-~GvVIgeta~IGddv~I~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~------  137 (194)
T COG1045          65 LFGIEIHPGAKIGRGLFIDHG-TGVVIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGN------  137 (194)
T ss_pred             hcceeeCCCCeECCceEEcCC-ceEEEcceeEECCCeEEEcceEecCCCCcCCCCCCccCCCeEECCCCEEEcc------
Confidence            355556666655       22 3577777777777777763311           3578888888888888776      


Q ss_pred             ceEEeeCCCeEECCCcEEE
Q psy2215         129 GFLVYPGSTVYLVFTASVR  147 (172)
Q Consensus       129 g~~~~pGd~V~IG~navI~  147 (172)
                         +.+|||+.||+||+|.
T Consensus       138 ---I~IGd~akIGA~sVVl  153 (194)
T COG1045         138 ---IEIGDNAKIGAGSVVL  153 (194)
T ss_pred             ---eEECCCCEECCCceEc
Confidence               6789999999999999

>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=98.02  E-value=3.2e-05  Score=68.38  Aligned_cols=60  Identities=17%  Similarity=0.220  Sum_probs=50.2

Q ss_pred             cceEECCCeEECCCcEEcCCCc-----ceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEE
Q psy2215          82 QNIVLTGKVIIQCDAVLRGDLA-----NIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQI  155 (172)
Q Consensus        82 ~nI~Igg~v~I~~~avIrGdl~-----~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~I  155 (172)
                      +.+.||+.+.|++++.|.|.+.     +|+||++|.||.||.|  .         +.+||++.||++++|.   ++++|
T Consensus       198 HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe~~~IGagA~I--G---------I~IGd~~VVGAGaVVt---kgT~v  262 (319)
T TIGR03535       198 AGVVVGDGSDIGGGASIMGTLSGGGKEVISIGERCLLGANSGL--G---------ISLGDDCVVEAGLYVT---AGTKV  262 (319)
T ss_pred             cCCEECCCCEECCCceecceecCCCcccEEECCCcEECCCCEE--C---------eEECCCCEECCCCEEe---CCeEE
Confidence            5678999999999999776433     6999999999999999  3         5679999999999999   55544

Alternate name: tetrahydrodipicolinate N-succinyltransferase.

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=98.02  E-value=2e-05  Score=70.34  Aligned_cols=31  Identities=6%  Similarity=-0.027  Sum_probs=26.0

Q ss_pred             EeeCCCeEECCCcEEEecCCCeEECCCceeCCeE
Q psy2215         132 VYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCPL  165 (172)
Q Consensus       132 ~~pGd~V~IG~navI~i~~pga~IGs~v~iga~i  165 (172)
                      +.+||+|+||.+++|.   |+++||+++.+++..
T Consensus       384 ~~Igd~~~ig~~~~i~---~gv~Ig~~~~i~ag~  414 (448)
T PRK14357        384 TFIEDGAFIGSNSSLV---APVRIGKGALIGAGS  414 (448)
T ss_pred             cEECCCCEECCCCEEe---CCcEECCCCEEcCCC
Confidence            4569999999999998   999999999966553

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=97.98  E-value=3.7e-05  Score=69.86  Aligned_cols=31  Identities=10%  Similarity=0.179  Sum_probs=22.9

Q ss_pred             cCCeeecCCeEecccceEECCCeEECCCcEEcC
Q psy2215          68 SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRG  100 (172)
Q Consensus        68 ~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrG  100 (172)
                      .+.+|...+.|.|  ++.||.++.|+++|+|++
T Consensus       276 ~~~~I~~~~~i~~--~v~Ig~~~~I~~~~~i~~  306 (482)
T PRK14352        276 RDVVIHPGTQLLG--RTTIGEDAVVGPDTTLTD  306 (482)
T ss_pred             CCcEEeCCcEEee--cCEECCCCEECCCCEEec
Confidence            4555666677766  578888888888888863

>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

Probab=97.96  E-value=3.1e-05  Score=56.99  Aligned_cols=55  Identities=18%  Similarity=0.115  Sum_probs=27.8

Q ss_pred             EECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE--ecCCCeEECCCce
Q psy2215          91 IIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR--LKSPFAQIYSYII  160 (172)
Q Consensus        91 ~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~--i~~pga~IGs~v~  160 (172)
                      .|++++.|. +   ..||++|.|+ ++.|...          .+++++.||++|.|.  ++++++.||+++.
T Consensus         3 ~i~~~~~i~-~---s~Ig~~~~I~-~~~I~~s----------vi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~   59 (104)
T cd04651           3 YIGRRGEVK-N---SLVSEGCIIS-GGTVENS----------VLFRGVRVGSGSVVEDSVIMPNVGIGRNAV   59 (104)
T ss_pred             eecCCCEEE-e---EEECCCCEEc-CeEEEeC----------EEeCCCEECCCCEEEEeEEcCCCEECCCCE
Confidence            344445443 2   4455555555 5555432          235556666666665  5555555554444

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.

>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

Probab=97.96  E-value=4.7e-05  Score=60.24  Aligned_cols=65  Identities=17%  Similarity=0.234  Sum_probs=54.7

Q ss_pred             cCCeEecccceEECCCeEECCCcEEcCC----------------CcceEECCCCeeCCCCEEccCCccCCCceEEeeCCC
Q psy2215          74 RKSLVAGAQNIVLTGKVIIQCDAVLRGD----------------LANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGST  137 (172)
Q Consensus        74 ~~a~I~G~~nI~Igg~v~I~~~avIrGd----------------l~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~  137 (172)
                      ..+.+.-..+++||.++.+.+++.|...                ..++.||++|.||.|++|.|.         +.+||+
T Consensus        78 ~~~~~~~~~~i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~IlpG---------V~IG~g  148 (190)
T COG0110          78 VNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILPG---------VTIGEG  148 (190)
T ss_pred             CCcEEEecCCeEECCCceECCCcEEecCCCCCChhhcccCCceecCCeEECCCeEEcCccEECCC---------EEECCC
Confidence            4555555678999999999999999841                115999999999999999998         667999


Q ss_pred             eEECCCcEEE
Q psy2215         138 VYLVFTASVR  147 (172)
Q Consensus       138 V~IG~navI~  147 (172)
                      +.||+++++.
T Consensus       149 avigagsVVt  158 (190)
T COG0110         149 AVIGAGSVVT  158 (190)
T ss_pred             cEEeeCCEEe
Confidence            9999999999

>KOG1460|consensus

Probab=97.95  E-value=6.5e-06  Score=73.11  Aligned_cols=108  Identities=19%  Similarity=0.130  Sum_probs=62.5

Q ss_pred             eeeccceecccCCchhhhhhccccccCCeeecCCeEe---cccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEE
Q psy2215          43 DFLSRGWWFESKSSHKILVYSGAVASGNKVSRKSLVA---GAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVI  119 (172)
Q Consensus        43 ~~~~~g~W~D~~~p~~Ll~~~~~~~~gn~Is~~a~I~---G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI  119 (172)
                      .+...++|-...++-.-|.++++.++--+-.-...+.   |++ -+|-++++|+|+|++...   .+||+|+.||+|++|
T Consensus       240 ~y~t~~fW~QiKtagsal~as~lYLs~yk~t~p~~Lak~pgt~-a~IigdVyIhPsakvhpt---AkiGPNVSIga~vrv  315 (407)
T KOG1460|consen  240 AYETTDFWSQIKTAGSALYASRLYLSQYKRTHPARLAKGPGTQ-AEIIGDVYIHPSAKVHPT---AKIGPNVSIGANVRV  315 (407)
T ss_pred             EEecccHHHHhccccceeehhhhHHHHHhhcCchhhcCCCCCC-ceEEeeeEEcCcceeCCc---cccCCCceecCCcee
Confidence            4556677777777777677666665422211112222   222 344456777777776654   555555555555555


Q ss_pred             ccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECCCceeC
Q psy2215         120 RPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAP  162 (172)
Q Consensus       120 ~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~ig  162 (172)
                      +++.+.-+    ..+-|++.|.+|+++.    .+.||-++.+|
T Consensus       316 g~GvRl~~----sIIl~d~ei~enavVl----~sIigw~s~iG  350 (407)
T KOG1460|consen  316 GPGVRLRE----SIILDDAEIEENAVVL----HSIIGWKSSIG  350 (407)
T ss_pred             cCCceeee----eeeccCcEeeccceEE----eeeeccccccc
Confidence            55543200    1247889999999998    66666655544

>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH

Probab=97.92  E-value=5.5e-05  Score=60.41  Aligned_cols=16  Identities=6%  Similarity=0.044  Sum_probs=6.6

Q ss_pred             EECCCeEECCCcEEcC
Q psy2215          85 VLTGKVIIQCDAVLRG  100 (172)
Q Consensus        85 ~Igg~v~I~~~avIrG  100 (172)
                      .||.+++|.+++++.-
T Consensus        15 ~IG~GtvI~~gavV~~   30 (147)
T cd04649          15 YLAEGTTVMHEGFVNF   30 (147)
T ss_pred             EECCCcEECCCCEEcc
Confidence            3344444444444443

THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.

>PLN02694 serine O-acetyltransferase

Probab=97.91  E-value=7.5e-05  Score=65.56  Aligned_cols=69  Identities=17%  Similarity=0.200  Sum_probs=47.3

Q ss_pred             CeeecCCeEecccceEECCCeEECCCcEEcCCC-----------cceEECCCCeeCCCCEEccCCccCCCceEEeeCCCe
Q psy2215          70 NKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDL-----------ANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTV  138 (172)
Q Consensus        70 n~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl-----------~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V  138 (172)
                      .+|.+...|-..-++.||+++.|+++|.|...+           ....||++|.||.||+|.++         +.+|+++
T Consensus       167 A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg~g~~~~~r~piIGd~V~IGagA~Ilgg---------i~IGd~a  237 (294)
T PLN02694        167 AKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKACGDRHPKIGDGVLIGAGATILGN---------VKIGEGA  237 (294)
T ss_pred             ceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCCcccccCCCccEECCCeEECCeeEECCC---------CEECCCC
Confidence            334444444333357777777777777775331           14677888888888777766         5579999


Q ss_pred             EECCCcEEE
Q psy2215         139 YLVFTASVR  147 (172)
Q Consensus       139 ~IG~navI~  147 (172)
                      .||++++|.
T Consensus       238 ~IGAgSVV~  246 (294)
T PLN02694        238 KIGAGSVVL  246 (294)
T ss_pred             EECCCCEEC
Confidence            999999998

>COG1043 LpxA Acyl-[acyl carrier protein]

Probab=97.91  E-value=4e-05  Score=65.86  Aligned_cols=54  Identities=19%  Similarity=0.116  Sum_probs=38.7

Q ss_pred             CCeeecCCeEecccceEECCCeEECCCcEEcCCCc---------ceEECCCCeeCCCCEEccCCc
Q psy2215          69 GNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLA---------NIRTGRYCIISKGVVIRPPFK  124 (172)
Q Consensus        69 gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~---------~V~IG~~c~Ig~navI~p~~~  124 (172)
                      +-.+-..+.+.|  ..+||.++.|.+.|.|.++-.         .+.||++|.|-|.++|+..+.
T Consensus        39 ~t~l~shvvv~G--~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG~~n~IRE~vTi~~GT~  101 (260)
T COG1043          39 GTVLKSHVVVEG--HTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGDNNTIREFVTIHRGTV  101 (260)
T ss_pred             CcEEcccEEEeC--CeEECCCCEEecccccCCCCcccccCCCceEEEECCCCeEeeEEEEecccc
Confidence            333334455566  467777777777777765422         799999999999999998864

>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix

Probab=97.89  E-value=1.6e-05  Score=47.71  Aligned_cols=32  Identities=44%  Similarity=0.740  Sum_probs=15.2

Q ss_pred             EECCCeEECCCcEEcCCCcceEECCCCeeCCCCEE
Q psy2215          85 VLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVI  119 (172)
Q Consensus        85 ~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI  119 (172)
                      .|++++.|++++.|.++   +.||++|.|+++++|
T Consensus         3 ~Ig~~~~i~~~~~i~~~---~~Ig~~~~I~~~~~I   34 (36)
T PF00132_consen    3 VIGDNVIIGPNAVIGGG---VVIGDNCVIGPGVVI   34 (36)
T ss_dssp             EEETTEEEETTEEEETT---EEE-TTEEEETTEEE
T ss_pred             EEcCCCEECCCcEecCC---CEECCCCEEcCCCEE
Confidence            44445555555555444   445555544444444

A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....

>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=97.82  E-value=9.7e-05  Score=65.82  Aligned_cols=78  Identities=15%  Similarity=-0.067  Sum_probs=59.3

Q ss_pred             EECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceE-------EeeCCCeEECCCcEEE-ecCCC----
Q psy2215          85 VLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFL-------VYPGSTVYLVFTASVR-LKSPF----  152 (172)
Q Consensus        85 ~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~-------~~pGd~V~IG~navI~-i~~pg----  152 (172)
                      .+..+++|.+.++|+..   +.||++|.|.++++|..+......+.-       ..+|++|.||.+|.|. .+.++    
T Consensus       174 Vvp~gVrI~~sa~Vr~g---A~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasIg~tLsGg~~~~  250 (341)
T TIGR03536       174 VVPKGVRIADTARVRLG---AYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCSTMGTLSGGGNIV  250 (341)
T ss_pred             EccCCcEEcCCCeEcCC---cEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEEeEEEeCCCcee
Confidence            66778888888888876   888999999888888876552222211       2459999999999998 77788    


Q ss_pred             eEECCCceeCCeE
Q psy2215         153 AQIYSYIIAPCPL  165 (172)
Q Consensus       153 a~IGs~v~iga~i  165 (172)
                      +.||++|.+|+..
T Consensus       251 V~IGe~~lIGagA  263 (341)
T TIGR03536       251 ISVGEGCLLGANA  263 (341)
T ss_pred             EEECCCcEECCCC
Confidence            8999999965543

2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.

>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A

Probab=97.82  E-value=2.8e-05  Score=47.36  Aligned_cols=34  Identities=29%  Similarity=0.520  Sum_probs=25.6

Q ss_pred             ceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEcc
Q psy2215          83 NIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRP  121 (172)
Q Consensus        83 nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p  121 (172)
                      ++.||+++.|++++.| |    ++||++|.|++|++|.+
T Consensus         1 pv~IG~~~~ig~~~~i-g----i~igd~~~i~~g~~I~~   34 (34)
T PF14602_consen    1 PVTIGDNCFIGANSTI-G----ITIGDGVIIGAGVVITA   34 (34)
T ss_dssp             TEEE-TTEEE-TT-EE-T----SEE-TTEEE-TTEEEES
T ss_pred             CeEECCCEEECccccc-C----CEEcCCCEECCCCEEcC
Confidence            5789999999999998 3    99999999999999863

...

>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix

Probab=97.79  E-value=3e-05  Score=46.48  Aligned_cols=34  Identities=21%  Similarity=0.187  Sum_probs=25.3

Q ss_pred             eEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215         105 IRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR  147 (172)
Q Consensus       105 V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~  147 (172)
                      +.||++|.|+++++|.++         ..+|+++.|+++|+|.
T Consensus         2 ~~Ig~~~~i~~~~~i~~~---------~~Ig~~~~I~~~~~I~   35 (36)
T PF00132_consen    2 VVIGDNVIIGPNAVIGGG---------VVIGDNCVIGPGVVIG   35 (36)
T ss_dssp             EEEETTEEEETTEEEETT---------EEE-TTEEEETTEEEE
T ss_pred             CEEcCCCEECCCcEecCC---------CEECCCCEEcCCCEEC
Confidence            678888888888888886         4557777777777665

A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....

>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]

Probab=97.78  E-value=4.7e-05  Score=66.04  Aligned_cols=63  Identities=14%  Similarity=0.220  Sum_probs=41.1

Q ss_pred             ceEECCCeEECCCcEEcCC------Cc-----ceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCC
Q psy2215          83 NIVLTGKVIIQCDAVLRGD------LA-----NIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSP  151 (172)
Q Consensus        83 nI~Igg~v~I~~~avIrGd------l~-----~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~p  151 (172)
                      ++++|+.++|++|+-|.|.      +.     |+.||++|.||.|+++...         +..||+|.|+++..|.   .
T Consensus       150 ~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~IgdncliGAns~~veG---------V~vGdg~VV~aGv~I~---~  217 (271)
T COG2171         150 RASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGANSEVVEG---------VIVGDGCVVAAGVFIT---Q  217 (271)
T ss_pred             eeeeeccEEECCCcccCCcceEeEEecCCCCCCeEECCccEeccccceEee---------eEeCCCcEEecceEEe---C
Confidence            3455555555555444433      22     9999999999999988776         4457777777777666   5


Q ss_pred             CeEECC
Q psy2215         152 FAQIYS  157 (172)
Q Consensus       152 ga~IGs  157 (172)
                      ++.|..
T Consensus       218 ~tki~~  223 (271)
T COG2171         218 DTKIYD  223 (271)
T ss_pred             CcceEE
Confidence            555544

>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=97.76  E-value=0.00013  Score=63.93  Aligned_cols=60  Identities=17%  Similarity=0.030  Sum_probs=33.6

Q ss_pred             EECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCC----eEECCCce
Q psy2215          85 VLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPF----AQIYSYII  160 (172)
Q Consensus        85 ~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pg----a~IGs~v~  160 (172)
                      .|+.++.|+++|+|+    +..|+++|.|+++|+|..          ..+|+++.||+++.+.   ++    ..||+++.
T Consensus       310 ~ig~~~~I~~~~~i~----~svi~~~~~i~~~~~i~~----------~ii~~~~~i~~~~~i~---~~~~~~~~ig~~~~  372 (380)
T PRK05293        310 VLFQGVQVGEGSVVK----DSVIMPGAKIGENVVIER----------AIIGENAVIGDGVIIG---GGKEVITVIGENEV  372 (380)
T ss_pred             EEcCCCEECCCCEEE----CCEEeCCCEECCCeEEeE----------EEECCCCEECCCCEEc---CCCceeEEEeCCCC
Confidence            344444444444443    244555555555555543          2347777777777777   32    56777766


Q ss_pred             e
Q psy2215         161 A  161 (172)
Q Consensus       161 i  161 (172)
                      +
T Consensus       373 ~  373 (380)
T PRK05293        373 I  373 (380)
T ss_pred             C
Confidence            3

>KOG4750|consensus

Probab=97.57  E-value=0.00014  Score=62.33  Aligned_cols=59  Identities=15%  Similarity=0.083  Sum_probs=43.8

Q ss_pred             ceEECCCCeeCCCCEEccCCccC--CC--ceEE-eeCCCeEECCCcEEEecCCCeEECCCceeCCeE
Q psy2215         104 NIRTGRYCIISKGVVIRPPFKKF--AK--GFLV-YPGSTVYLVFTASVRLKSPFAQIYSYIIAPCPL  165 (172)
Q Consensus       104 ~V~IG~~c~Ig~navI~p~~~~~--~~--g~~~-~pGd~V~IG~navI~i~~pga~IGs~v~iga~i  165 (172)
                      .|.||+-.+||+|+.|..+...-  -+  |... .+||+|+||.++.|.   |+++||+++.++|..
T Consensus       168 gvvigeTAvvg~~vSilH~Vtlggtgk~~gdrhP~Igd~vliGaGvtIL---gnV~IGegavIaAGs  231 (269)
T KOG4750|consen  168 GVVIGETAVVGDNVSILHPVTLGGTGKGSGDRHPKIGDNVLIGAGVTIL---GNVTIGEGAVIAAGS  231 (269)
T ss_pred             ceeecceeEeccceeeecceeeccccccccccCCcccCCeEEccccEEe---CCeeECCCcEEeccc
Confidence            68888888888888887654311  11  1111 459999999999999   999999999976643

>TIGR02091 glgC glucose-1-phosphate adenylyltransferase

Probab=97.52  E-value=0.00033  Score=60.84  Aligned_cols=35  Identities=11%  Similarity=-0.073  Sum_probs=26.8

Q ss_pred             eeCCCeEECCCcEEE--ecCCCeEECCCce-eCCeEEe
Q psy2215         133 YPGSTVYLVFTASVR--LKSPFAQIYSYII-APCPLHV  167 (172)
Q Consensus       133 ~pGd~V~IG~navI~--i~~pga~IGs~v~-iga~i~~  167 (172)
                      .+|++|.||++|+|.  ++|+++.||+++. .+|.+++
T Consensus       312 ~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~ivg~  349 (361)
T TIGR02091       312 VLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDK  349 (361)
T ss_pred             EECCCCEECCCCEEeeeEEeCCCEECCCCEEeeeEECC
Confidence            458899999999998  8888888888877 3444443

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=97.44  E-value=0.00084  Score=58.36  Aligned_cols=64  Identities=22%  Similarity=0.274  Sum_probs=35.6

Q ss_pred             eecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCc-EEE
Q psy2215          72 VSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTA-SVR  147 (172)
Q Consensus        72 Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~na-vI~  147 (172)
                      +.+.+.|.   +..|.+.+.|+++|.|. +   ..|+++|.|+++|+|+. ... .   ...+++++.|++++ .+.
T Consensus       257 i~~~~~i~---~~~i~~~~~Ig~~~~I~-~---~~i~~~~~Ig~~~~i~~-~~i-~---~s~i~~~~~i~~~~~~~~  321 (353)
T TIGR01208       257 VGEGAKIV---NSVIRGPAVIGEDCIIE-N---SYIGPYTSIGEGVVIRD-AEV-E---HSIVLDESVIEGVQARIV  321 (353)
T ss_pred             ECCCCEEe---CCEEECCcEECCCCEEc-C---cEECCCCEECCCCEEee-eEE-E---eeEEcCCCEEcCCcceee
Confidence            34445552   34556667777777775 2   46667777777777652 110 0   02346666666653 555

Alternate name: dTDP-D-glucose synthase

>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit

Probab=97.32  E-value=0.00051  Score=60.06  Aligned_cols=28  Identities=11%  Similarity=-0.154  Sum_probs=24.3

Q ss_pred             eeCCCeEECCCcEEE--ecCCCeEECCCce
Q psy2215         133 YPGSTVYLVFTASVR--LKSPFAQIYSYII  160 (172)
Q Consensus       133 ~pGd~V~IG~navI~--i~~pga~IGs~v~  160 (172)
                      .++++|.||++|.|.  |+++++.|++++.
T Consensus       306 ~i~~~~~I~~~~~i~~sii~~~~~I~~~~~  335 (369)
T TIGR02092       306 ILSRGVHVGKDALIKNCIIMQRTVIGEGAH  335 (369)
T ss_pred             EECCCCEECCCCEEEeeEEeCCCEECCCCE
Confidence            469999999999998  8888888888776

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.

>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=97.19  E-value=0.00069  Score=61.11  Aligned_cols=28  Identities=14%  Similarity=-0.112  Sum_probs=24.7

Q ss_pred             eeCCCeEECCCcEEE--ecCCCeEECCCce
Q psy2215         133 YPGSTVYLVFTASVR--LKSPFAQIYSYII  160 (172)
Q Consensus       133 ~pGd~V~IG~navI~--i~~pga~IGs~v~  160 (172)
                      .+|++|.||++|.|.  |+|++|.||+++.
T Consensus       345 vi~~~~~I~~~~~i~~svi~~~~~I~~~~~  374 (425)
T PRK00725        345 VLFSRVRVNSFSNVEDSVLLPDVNVGRSCR  374 (425)
T ss_pred             EECCCCEECCCCEEeeeEEcCCCEECCCCE
Confidence            358999999999999  8999999998887

>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=97.16  E-value=0.00075  Score=60.32  Aligned_cols=46  Identities=20%  Similarity=0.086  Sum_probs=35.2

Q ss_pred             ceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE--ecCCCeEECCCce
Q psy2215         104 NIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR--LKSPFAQIYSYII  160 (172)
Q Consensus       104 ~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~--i~~pga~IGs~v~  160 (172)
                      ++.||++|.|+ ++.|..          ..+|++|.||++|.|.  |+|+++.||+++.
T Consensus       315 ~~~ig~~~~I~-~~~i~~----------svIg~~~~I~~~~~i~~sii~~~~~i~~~~~  362 (407)
T PRK00844        315 DSLVSAGSIIS-GATVRN----------SVLSPNVVVESGAEVEDSVLMDGVRIGRGAV  362 (407)
T ss_pred             eCEEcCCCEEC-CeeeEc----------CEECCCCEECCCCEEeeeEECCCCEECCCCE
Confidence            35566666665 555553          3469999999999998  9999999999877

>PLN02241 glucose-1-phosphate adenylyltransferase

Probab=97.14  E-value=0.0027  Score=57.43  Aligned_cols=16  Identities=13%  Similarity=-0.024  Sum_probs=8.9

Q ss_pred             eEECCCeEECCCcEEc
Q psy2215          84 IVLTGKVIIQCDAVLR   99 (172)
Q Consensus        84 I~Igg~v~I~~~avIr   99 (172)
                      -.|+.++.|+++|+|.
T Consensus       332 svI~~~~~Ig~~~~I~  347 (436)
T PLN02241        332 SVVGLRSRIGEGVEIE  347 (436)
T ss_pred             eEEcCCCEECCCCEEE
Confidence            3555555555555554

>KOG4750|consensus

Probab=97.02  E-value=0.0015  Score=56.17  Aligned_cols=55  Identities=20%  Similarity=0.277  Sum_probs=39.7

Q ss_pred             ceEECCCeEECCCc------EEcCC------CcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215          83 NIVLTGKVIIQCDA------VLRGD------LANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR  147 (172)
Q Consensus        83 nI~Igg~v~I~~~a------vIrGd------l~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~  147 (172)
                      .|.||+.++|+.++      .+.|.      --| .||++|.||.++.|-++         +.+|++..||++++|.
T Consensus       168 gvvigeTAvvg~~vSilH~Vtlggtgk~~gdrhP-~Igd~vliGaGvtILgn---------V~IGegavIaAGsvV~  234 (269)
T KOG4750|consen  168 GVVIGETAVVGDNVSILHPVTLGGTGKGSGDRHP-KIGDNVLIGAGVTILGN---------VTIGEGAVIAAGSVVL  234 (269)
T ss_pred             ceeecceeEeccceeeecceeeccccccccccCC-cccCCeEEccccEEeCC---------eeECCCcEEeccceEE
Confidence            35555555555544      44432      227 99999999999999998         5568888888888887

>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

Probab=97.02  E-value=0.00019  Score=62.68  Aligned_cols=62  Identities=21%  Similarity=0.333  Sum_probs=45.0

Q ss_pred             eeeeccceecccCCchhhhhhccccccCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCC
Q psy2215          42 VDFLSRGWWFESKSSHKILVYSGAVASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISK  115 (172)
Q Consensus        42 ~~~~~~g~W~D~~~p~~Ll~~~~~~~~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~  115 (172)
                      +.-+.+|||+|+|+|.+|++++.+..+..      ...|  ...+....++. +..|+|+   ..||..|.|+.
T Consensus       211 ~~~~~~G~WlDtGt~~slleA~~~i~~~~------~~~G--~~~~~~~~~~~-~~~i~~~---~~~~~~~~l~~  272 (286)
T COG1209         211 VAILIRGWWLDTGTPESLLEANNFVRTVS------KRQG--FKIACPEEIAW-NGWIDGP---GLIGLASQLEK  272 (286)
T ss_pred             EEEEccceEEecCChhhHHHHHHHHHHHH------hhcC--CEEeChhHEEE-ecEEech---Hhhccccchhh
Confidence            45678999999999999999999998732      2344  34455666666 7778876   66666666653

>KOG1460|consensus

Probab=96.93  E-value=0.0019  Score=57.75  Aligned_cols=47  Identities=17%  Similarity=0.093  Sum_probs=23.8

Q ss_pred             eEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE--ecCCCeEECCCce
Q psy2215         105 IRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR--LKSPFAQIYSYII  160 (172)
Q Consensus       105 V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~--i~~pga~IGs~v~  160 (172)
                      |.|-+.+.+.|.++|+|+         +.+|.+|.||+++-++  |+.++++|.+|+.
T Consensus       289 VyIhPsakvhptAkiGPN---------VSIga~vrvg~GvRl~~sIIl~d~ei~enav  337 (407)
T KOG1460|consen  289 VYIHPSAKVHPTAKIGPN---------VSIGANVRVGPGVRLRESIILDDAEIEENAV  337 (407)
T ss_pred             eEEcCcceeCCccccCCC---------ceecCCceecCCceeeeeeeccCcEeeccce
Confidence            444444444444555544         3345555555555555  5555555555543

>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=96.89  E-value=0.0052  Score=55.51  Aligned_cols=52  Identities=13%  Similarity=0.125  Sum_probs=34.8

Q ss_pred             ceEECCCeEECCCcEEcCCCcceEECC------------------CCeeCCCCEEccCCccCCCceEEeeCCCeEECCCc
Q psy2215          83 NIVLTGKVIIQCDAVLRGDLANIRTGR------------------YCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTA  144 (172)
Q Consensus        83 nI~Igg~v~I~~~avIrGdl~~V~IG~------------------~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~na  144 (172)
                      +-.|++++.|+++|+|...   |..|+                  +|.||++|+|...          .++++|.||+++
T Consensus       324 ~svi~~~~~Ig~~~~i~~s---vi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~----------ii~~~~~i~~~~  390 (429)
T PRK02862        324 HSVLGIRSRIESGCTIEDT---LVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRA----------IIDKNARIGNNV  390 (429)
T ss_pred             EEEEeCCcEECCCCEEEee---EEecCcccccccccccccccCCcccEECCCCEEEEE----------EECCCcEECCCc
Confidence            4567777777777777653   44453                  6777777777653          346777777777


Q ss_pred             EEE
Q psy2215         145 SVR  147 (172)
Q Consensus       145 vI~  147 (172)
                      .|.
T Consensus       391 ~~~  393 (429)
T PRK02862        391 RIV  393 (429)
T ss_pred             EEe
Confidence            775

>KOG1462|consensus

Probab=96.80  E-value=0.0044  Score=56.67  Aligned_cols=56  Identities=14%  Similarity=0.112  Sum_probs=28.5

Q ss_pred             EECCCeEECCCcEEcCCCc--ceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECCCce
Q psy2215          85 VLTGKVIIQCDAVLRGDLA--NIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYII  160 (172)
Q Consensus        85 ~Igg~v~I~~~avIrGdl~--~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~  160 (172)
                      .||.+|.|++.++|.+.+-  +|.||++|.| +||+|               |+++.||++|.+.    +|.||.+=+
T Consensus       353 viG~nC~Ig~~~~v~nSilm~nV~vg~G~~I-ensII---------------g~gA~Ig~gs~L~----nC~Ig~~yv  410 (433)
T KOG1462|consen  353 VIGSNCDIGERVKVANSILMDNVVVGDGVNI-ENSII---------------GMGAQIGSGSKLK----NCIIGPGYV  410 (433)
T ss_pred             eecCCccccCCcEEEeeEeecCcEecCCcce-eccee---------------cccceecCCCeee----eeEecCCcE
Confidence            4566666666666654321  3333333333 13333               3456666666666    555554433

>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=96.38  E-value=0.011  Score=53.97  Aligned_cols=46  Identities=26%  Similarity=0.298  Sum_probs=29.7

Q ss_pred             eecCCeEecc-cceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEcc
Q psy2215          72 VSRKSLVAGA-QNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRP  121 (172)
Q Consensus        72 Is~~a~I~G~-~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p  121 (172)
                      ++..|.|.|. .|=.|+.++.|+++|+|..    ..|=++|.||+||+|+.
T Consensus       299 v~~GciI~G~V~nSVL~~~v~I~~gs~i~~----svim~~~~IG~~~~l~~  345 (393)
T COG0448         299 VAGGCIISGTVENSVLFRGVRIGKGSVIEN----SVIMPDVEIGEGAVLRR  345 (393)
T ss_pred             eeCCeEEEeEEEeeEEecCeEECCCCEEEe----eEEeCCcEECCCCEEEE
Confidence            3445566664 4556777788888887774    44555577777777764

>KOG4042|consensus

Probab=94.25  E-value=0.035  Score=45.32  Aligned_cols=55  Identities=18%  Similarity=0.351  Sum_probs=37.3

Q ss_pred             eEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215          84 IVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR  147 (172)
Q Consensus        84 I~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~  147 (172)
                      |.|...+++-..+-||||   |+|+++|++.|-+++-...     | ++++|+++.|.+.++|.
T Consensus         9 vkIap~AvVCvEs~irGd---vti~~gcVvHP~a~~iA~a-----G-PI~iGEnniiEEyA~i~   63 (190)
T KOG4042|consen    9 VKIAPSAVVCVESDIRGD---VTIKEGCVVHPFAVFIATA-----G-PIYIGENNIIEEYAVIR   63 (190)
T ss_pred             eeecCceEEEEecccccc---eEecCCcEecceEEEEccc-----C-CEEEccCchhhhHHHHH
Confidence            566667777777788888   8888888888877776542     1 14556666666655554

>KOG1322|consensus

Probab=93.66  E-value=0.084  Score=47.68  Aligned_cols=18  Identities=39%  Similarity=0.637  Sum_probs=8.1

Q ss_pred             eEECCCCeeCCCCEEccC
Q psy2215         105 IRTGRYCIISKGVVIRPP  122 (172)
Q Consensus       105 V~IG~~c~Ig~navI~p~  122 (172)
                      +.||++|.||+|++|+|.
T Consensus       271 ~~iG~~C~Ig~~vvIG~r  288 (371)
T KOG1322|consen  271 ASIGENCSIGPNVVIGPR  288 (371)
T ss_pred             cccCCccEECCCceECCC
Confidence            344444444444444443

>COG4801 Predicted acyltransferase [General function prediction only]

Probab=86.46  E-value=2.3  Score=37.09  Aligned_cols=32  Identities=22%  Similarity=0.520  Sum_probs=16.5

Q ss_pred             EECCCeEECCCcEEcCCCc--ceEECCCCeeCCC
Q psy2215          85 VLTGKVIIQCDAVLRGDLA--NIRTGRYCIISKG  116 (172)
Q Consensus        85 ~Igg~v~I~~~avIrGdl~--~V~IG~~c~Ig~n  116 (172)
                      .++.++++++++.|.||+.  .++|+-.|-+.-|
T Consensus        35 V~g~~iivge~v~i~Gdiva~diridmw~kv~gN   68 (277)
T COG4801          35 VVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGN   68 (277)
T ss_pred             eeeeeEEeccCcEEeeeEEecceeeeeeeEeecc
Confidence            4456666666666666632  3444444443333

>COG4801 Predicted acyltransferase [General function prediction only]

Probab=85.01  E-value=2.9  Score=36.42  Aligned_cols=36  Identities=31%  Similarity=0.363  Sum_probs=22.3

Q ss_pred             ceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccC
Q psy2215          83 NIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPP  122 (172)
Q Consensus        83 nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~  122 (172)
                      +|...+.++|++++.++-.    .+|+..+.|+++.|...
T Consensus        16 ~ivv~gdViIG~nS~l~~~----V~g~~iivge~v~i~Gd   51 (277)
T COG4801          16 IIVVKGDVIIGKNSMLKYG----VVGEEIIVGERVRIYGD   51 (277)
T ss_pred             eEEEeccEEEcccceeeee----eeeeeEEeccCcEEeee
Confidence            4555667777777777632    45666666666666644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	172
3hjj_A	190	Maltose O-acetyltransferase; LEFT-handed beta-heli	99.38
3srt_A	188	Maltose O-acetyltransferase; structural genomics,	99.37
3ftt_A	199	Putative acetyltransferase sacol2570; galactoside	99.35
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	99.34
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	99.32
3tv0_A	194	Dynactin subunit 6; LEFT-handed beta-helix, ARP11,	99.32
1krr_A	203	Galactoside O-acetyltransferase; LEFT-handed paral	99.31
2p2o_A	185	Maltose transacetylase; GK1921, GKA001001921.1, ge	99.31
3nz2_A	195	Hexapeptide-repeat containing-acetyltransferase; s	99.29
3r1w_A	189	Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid	99.29
1ocx_A	182	Maltose O-acetyltransferase; LEFT-handed parallel	99.28
3r3r_A	187	Ferripyochelin binding protein; structural genomic	99.28
1qre_A	247	Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth	99.26
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	99.26
3ixc_A	191	Hexapeptide transferase family protein; niaid, ssg	99.24
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	99.18
3jqy_B	252	NEUO, polysialic acid O-acetyltransferase; LEFT-ha	99.18
1v3w_A	173	Ferripyochelin binding protein; beta-helix, carbon	99.17
1xhd_A	173	Putative acetyltransferase/acyltransferase; struct	99.17
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	99.14
3r1w_A	189	Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid	99.14
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	99.13
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	99.12
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	99.12
3r3r_A	187	Ferripyochelin binding protein; structural genomic	99.1
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	99.09
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	99.07
2wlg_A	215	Polysialic acid O-acetyltransferase; enzyme, LEFT-	99.07
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	99.05
1qre_A	247	Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth	99.04
3ixc_A	191	Hexapeptide transferase family protein; niaid, ssg	99.02
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	99.01
1v3w_A	173	Ferripyochelin binding protein; beta-helix, carbon	98.99
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	98.99
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	98.98
1xhd_A	173	Putative acetyltransferase/acyltransferase; struct	98.96
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	98.94
4hur_A	220	Virginiamycin A acetyltransferase; structural geno	98.94
3eev_A	212	Chloramphenicol acetyltransferase; beta-helix, str	98.94
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	98.94
3tv0_A	194	Dynactin subunit 6; LEFT-handed beta-helix, ARP11,	98.93
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	98.92
1xat_A	212	Xenobiotic acetyltransferase; chloramphenicol, LEF	98.91
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	98.91
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	98.9
3gos_A	276	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	98.89
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	98.89
3f1x_A	310	Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9	98.89
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	98.89
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	98.87
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	98.87
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	98.87
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	98.86
3mc4_A	287	WW/RSP5/WWP domain:bacterial transferase hexapept	98.86
4e6u_A	265	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	98.86
3tk8_A	316	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	98.85
4e6u_A	265	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	98.85
3q1x_A	313	Serine acetyltransferase; cysteine biosynthesis, L	98.84
2p2o_A	185	Maltose transacetylase; GK1921, GKA001001921.1, ge	98.83
3eg4_A	304	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	98.82
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	98.81
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	98.81
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	98.81
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	98.8
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	98.8
3srt_A	188	Maltose O-acetyltransferase; structural genomics,	98.8
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	98.8
4e79_A	357	UDP-3-O-acylglucosamine N-acyltransferase; lipopol	98.78
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	98.78
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	98.77
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	98.77
1t3d_A	289	SAT, serine acetyltransferase; LEFT-handed-beta-he	98.77
1ssq_A	267	SAT, serine acetyltransferase; LEFT-handed paralle	98.76
2rij_A	387	Putative 2,3,4,5-tetrahydropyridine-2-carboxylate	98.76
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	98.76
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	98.75
3r5d_A	347	Tetrahydrodipicolinate N-succinyletransferase; 1.8	98.74
3hjj_A	190	Maltose O-acetyltransferase; LEFT-handed beta-heli	98.73
1ocx_A	182	Maltose O-acetyltransferase; LEFT-handed parallel	98.73
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	98.73
3fsy_A	332	Tetrahydrodipicolinate N-succinyltransferase; beta	98.73
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	98.72
3nz2_A	195	Hexapeptide-repeat containing-acetyltransferase; s	98.72
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	98.72
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	98.71
4e79_A	357	UDP-3-O-acylglucosamine N-acyltransferase; lipopol	98.7
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	98.7
3ftt_A	199	Putative acetyltransferase sacol2570; galactoside	98.69
2wlg_A	215	Polysialic acid O-acetyltransferase; enzyme, LEFT-	98.67
3gos_A	276	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	98.65
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	98.65
3jqy_B	252	NEUO, polysialic acid O-acetyltransferase; LEFT-ha	98.61
1krr_A	203	Galactoside O-acetyltransferase; LEFT-handed paral	98.61
4e8l_A	219	Virginiamycin A acetyltransferase; structural geno	98.6
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	98.59
1mr7_A	209	Streptogramin A acetyltransferase; LEFT-handed par	98.57
3eg4_A	304	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	98.55
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	98.5
3tk8_A	316	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	98.47
3mc4_A	287	WW/RSP5/WWP domain:bacterial transferase hexapept	98.47
3eev_A	212	Chloramphenicol acetyltransferase; beta-helix, str	98.42
3fsy_A	332	Tetrahydrodipicolinate N-succinyltransferase; beta	98.39
4hur_A	220	Virginiamycin A acetyltransferase; structural geno	98.36
3r5d_A	347	Tetrahydrodipicolinate N-succinyletransferase; 1.8	98.33
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	98.3
3q1x_A	313	Serine acetyltransferase; cysteine biosynthesis, L	98.24
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	98.19
3f1x_A	310	Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9	98.18
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	98.18
1ssq_A	267	SAT, serine acetyltransferase; LEFT-handed paralle	98.11
1t3d_A	289	SAT, serine acetyltransferase; LEFT-handed-beta-he	98.1
1xat_A	212	Xenobiotic acetyltransferase; chloramphenicol, LEF	97.98
2rij_A	387	Putative 2,3,4,5-tetrahydropyridine-2-carboxylate	97.91
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	97.89
4e8l_A	219	Virginiamycin A acetyltransferase; structural geno	97.84
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	97.77
1mr7_A	209	Streptogramin A acetyltransferase; LEFT-handed par	97.73
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	97.67

>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A*

Probab=99.38  E-value=3.7e-12  Score=101.06  Aligned_cols=100  Identities=19%  Similarity=0.236  Sum_probs=75.6

Q ss_pred             hcccccc-CCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccC-----CCce----E
Q psy2215          62 YSGAVAS-GNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF-----AKGF----L  131 (172)
Q Consensus        62 ~~~~~~~-gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~-----~~g~----~  131 (172)
                      +...... +..|.+.+.+.-..++.||++++|+++++|. +..+++||++|.|+++|+|....+..     ..+.    +
T Consensus        56 ~~~~~~~~~~~I~~~~~~~~g~~v~IG~~~~I~~~~~i~-~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~  134 (190)
T 3hjj_A           56 LLGSSADGKAQINPDFRCDYGYNIHVGKSFFANFNCVIL-DVCEVRIGDHCMFAPGVHIYTATHPLHPVERNSGKEYGKP  134 (190)
T ss_dssp             HSSEESSSCCEECSSCEESSSTTEEECTTCEECTTCEEE-CSSCEEECTTCEECTTCEEECEECCSSHHHHTSSEEEECC
T ss_pred             HhhhcCCCCcEECCCEEEEeCCceEECCceeeCCCeEEE-eCCCeEECCceEEcCCcEEecCCccCchhhccccccccCC
Confidence            3333334 5556655555334689999999999999998 45679999999999999997654322     1111    1


Q ss_pred             EeeCCCeEECCCcEEEecCCCeEECCCceeCCeE
Q psy2215         132 VYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCPL  165 (172)
Q Consensus       132 ~~pGd~V~IG~navI~i~~pga~IGs~v~iga~i  165 (172)
                      +.+||+|+||++|+|.   |+++||+++++|+..
T Consensus       135 v~IG~~v~IG~~~~I~---~gv~IG~~~vIgags  165 (190)
T 3hjj_A          135 VKIGNNVWVGGGAIIN---PGVSIGDNAVIASGA  165 (190)
T ss_dssp             EEECTTCEECTTCEEC---TTCEECTTCEECTTC
T ss_pred             eEECCCCEECCCCEEC---CCCEECCCCEECCCC
Confidence            4569999999999999   999999999976643

>3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A*

Probab=99.37  E-value=3.9e-12  Score=101.09  Aligned_cols=94  Identities=16%  Similarity=0.189  Sum_probs=71.4

Q ss_pred             cCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCC-----Cc----eEEeeCCCe
Q psy2215          68 SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFA-----KG----FLVYPGSTV  138 (172)
Q Consensus        68 ~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~-----~g----~~~~pGd~V  138 (172)
                      .+..+.+...+.-..++.||++++|+++++|. +..+|+||++|.|+++|+|....+.+.     .+    -++.+||+|
T Consensus        61 ~~~~I~~~~~~~~g~~~~IG~~~~i~~~~~i~-~~~~i~IG~~~~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v  139 (188)
T 3srt_A           61 KQINVEQNIRCDYGYNIHVGENFFANYDCIFL-DVCKIEIGDNVMLAPNVQIYTAYHPIDAQLRNSGIEYGSPVKIGDNV  139 (188)
T ss_dssp             SCEEECSCEEESSSTTEEECTTEEECTTEEEE-CSSCEEECSSCEECTTCEEECEECCSSHHHHHTTEEEECCEEECSSC
T ss_pred             CCCEEcCCEEEEeCCCeEECCcccccCceEEe-cCCceEECCeeEECCCcEEeeCCccCchhhccccceECCCcEECCCc
Confidence            33334444444223689999999999999998 556799999999999999975543321     11    125679999


Q ss_pred             EECCCcEEEecCCCeEECCCceeCCeE
Q psy2215         139 YLVFTASVRLKSPFAQIYSYIIAPCPL  165 (172)
Q Consensus       139 ~IG~navI~i~~pga~IGs~v~iga~i  165 (172)
                      +||++|+|.   |+++||+++.+|+..
T Consensus       140 ~IG~~~~I~---~gv~IG~~~vIgags  163 (188)
T 3srt_A          140 WIGGGVIIT---PGITIGDNVVIGAGS  163 (188)
T ss_dssp             EECTTCEEC---TTCEECSSEEECTTC
T ss_pred             EEcCCCEEC---CCcEECCCCEECCCC
Confidence            999999999   999999999976643

>3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A

Probab=99.35  E-value=4.5e-12  Score=101.53  Aligned_cols=94  Identities=16%  Similarity=0.102  Sum_probs=71.5

Q ss_pred             cCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCC-----Cce----EEeeCCCe
Q psy2215          68 SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFA-----KGF----LVYPGSTV  138 (172)
Q Consensus        68 ~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~-----~g~----~~~pGd~V  138 (172)
                      .+..+...+.+.-..++.||++++|+++|+|. +..++.||++|.|+++|+|....+.+.     .+.    ++.+||+|
T Consensus        59 ~~~~i~~~~~~~~g~~~~IG~~~~I~~~~~i~-~~~~v~IG~~v~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v  137 (199)
T 3ftt_A           59 DNVSISIPFDTDYGWNVKLGKNVYVNTNCYFM-DGGQITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSNT  137 (199)
T ss_dssp             SSEEECSSEEESSSTTEEECSSEEECTTEEEE-CSSCEEECSSEEECTTCEEECEECCSSHHHHHTTEEEECCEEECSSE
T ss_pred             CCeEEeCCEEEEecCCcEECCCeEECCCeEEe-cCCEEEECCCCEECCCCEEecCCCcCccccccccceecCCeEEcCCc
Confidence            33344444444334689999999999999997 445699999999999999976543221     111    24579999


Q ss_pred             EECCCcEEEecCCCeEECCCceeCCeE
Q psy2215         139 YLVFTASVRLKSPFAQIYSYIIAPCPL  165 (172)
Q Consensus       139 ~IG~navI~i~~pga~IGs~v~iga~i  165 (172)
                      +||++|+|.   |+++||+++++|+..
T Consensus       138 ~IG~~~~I~---~gv~IG~~~vIgags  161 (199)
T 3ftt_A          138 WFGGHVAVL---PGVTIGEGSVIGAGS  161 (199)
T ss_dssp             EECTTCEEC---TTCEECTTCEECTTC
T ss_pred             EEcCCCEEC---CCCEECCCCEECCCC
Confidence            999999999   999999999976653

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*

Probab=99.34  E-value=3.3e-12  Score=109.66  Aligned_cols=89  Identities=13%  Similarity=0.250  Sum_probs=63.5

Q ss_pred             eccceecccCCchhhhhhccccccC-------CeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCC
Q psy2215          45 LSRGWWFESKSSHKILVYSGAVASG-------NKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGV  117 (172)
Q Consensus        45 ~~~g~W~D~~~p~~Ll~~~~~~~~g-------n~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~na  117 (172)
                      ..++.|.|.++|+||+.++......       ..+...+.+.+  ++.|++++.|++++.|.++   +.||++|.|+++|
T Consensus       201 ~~~~~~~dI~t~edl~~a~~~l~~~~~~~~~~~~i~~~~~i~~--~~~ig~~~~I~~~~~i~~~---~~Ig~~~~I~~~~  275 (401)
T 2ggo_A          201 EYEGYWMDIGKPWNIIDVNKWALDNLVFSQNLGNVEDNVKIKG--KVIIEEDAEIKSGTYIEGP---VYIGKGSEIGPNS  275 (401)
T ss_dssp             ECCSCEEECCSHHHHHHHHHHHHHHTCCCEECSEECSSCEEES--CEEECTTCEECTTCEEESS---EEECTTCEECSSC
T ss_pred             EecceEEcCCCHHHHHHHHHHHHHhcccccccceeCCCCEEcC--CeEEcCCCEECCCCEEeCC---eEECCCCEECCCC
Confidence            4467899999999988776554322       33555666665  5788888888888888876   8888888888888


Q ss_pred             EEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215         118 VIRPPFKKFAKGFLVYPGSTVYLVFTASVR  147 (172)
Q Consensus       118 vI~p~~~~~~~g~~~~pGd~V~IG~navI~  147 (172)
                      +|+++         +.+|++|.||++|.|.
T Consensus       276 ~i~~~---------~~Ig~~~~ig~~~~i~  296 (401)
T 2ggo_A          276 YLRPY---------TILVEKNKIGASVEVK  296 (401)
T ss_dssp             EECTT---------EEECSSCEEEETCEEE
T ss_pred             EEcCC---------cEECCCCEECCCCEEe
Confidence            88765         3445555555555554

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A*

Probab=99.32  E-value=8.8e-12  Score=98.94  Aligned_cols=95  Identities=16%  Similarity=0.101  Sum_probs=58.6

Q ss_pred             cCCeeecCCeEecccceEECCCeEECCCcEEcCC------------------CcceEECCCCeeCCCCEEccCCccCCC-
Q psy2215          68 SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGD------------------LANIRTGRYCIISKGVVIRPPFKKFAK-  128 (172)
Q Consensus        68 ~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGd------------------l~~V~IG~~c~Ig~navI~p~~~~~~~-  128 (172)
                      .+..|.+.+.|.+..++.||+++.|+++|+|.++                  ..++.||++|.|+++|+|......|.. 
T Consensus        37 ~~~~I~~~~~i~~~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~  116 (205)
T 3vbi_A           37 KNVLISKKASIYNPGVISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIVYAAIDDFSGN  116 (205)
T ss_dssp             SSEEEBTTSEEESGGGEEECSSEEECTTCEEEEEEEECSSEEECTTCEEEEEEEEEEECTTCEECTTCEEESEECCCSSS
T ss_pred             CCCEECCCeEEccCCeeEECCCCEECCCCEEccceEECCCCEECCCeEEEcCCccEEECCCCEECCCcEEEeCCCCcccc
Confidence            4445667777777667777777777777777654                  112444444444555544311111100 


Q ss_pred             ---------------ceEEeeCCCeEECCCcEEEecCCCeEECCCceeCCeE
Q psy2215         129 ---------------GFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCPL  165 (172)
Q Consensus       129 ---------------g~~~~pGd~V~IG~navI~i~~pga~IGs~v~iga~i  165 (172)
                                     .-.+.+||+|+||++|+|.   ++++||+++.+++..
T Consensus       117 ~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~---~gv~Ig~~~~Ig~gs  165 (205)
T 3vbi_A          117 ALMGPTIPNQYKNVKTGKVILKKHVIIGAHSIIF---PNVVIGEGVAVGAMS  165 (205)
T ss_dssp             SCCSTTSCGGGCCCEECCEEECTTCEECTTCEEC---SSCEECTTCEECTTC
T ss_pred             cccCcccccccceeccCCEEECCCCEECCCCEEc---CCCEECCCCEEcCCC
Confidence                           0114569999999999998   899999999876543

>3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens}

Probab=99.32  E-value=1.4e-11  Score=97.46  Aligned_cols=93  Identities=17%  Similarity=0.133  Sum_probs=67.7

Q ss_pred             ccCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCC-------ceEEee-----
Q psy2215          67 ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAK-------GFLVYP-----  134 (172)
Q Consensus        67 ~~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~-------g~~~~p-----  134 (172)
                      ..+..|.+.+.|.|  ++.||++++|+++|+|+++..++.||++|.|+++|+|+........       ...+.+     
T Consensus        16 ~~~a~I~~~a~I~g--~V~IG~~~~I~~~~~I~~~~g~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~Ig~~~~   93 (194)
T 3tv0_A           16 APGAVVCVESEIRG--DVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYPDNITPDTEDPEPKPMIIGTNNV   93 (194)
T ss_dssp             CTTCEECTTSEEES--SEEECTTCEECTTCEEEESSSCEEECTTCEECTTCEEEECCCSCC---------CCEEECSSCE
T ss_pred             CCCCEEcCCCEEeC--CCEECCCCEECCCCEEccCCCCeEECCCccccCCcccccccccccccccccCcCCceEECCcce
Confidence            35566777888887  7999999999999999988888999999999999999754321100       001222     


Q ss_pred             ------------CCCeEECCCcEEEecCCCeEECCCceeCCe
Q psy2215         135 ------------GSTVYLVFTASVRLKSPFAQIYSYIIAPCP  164 (172)
Q Consensus       135 ------------Gd~V~IG~navI~i~~pga~IGs~v~iga~  164 (172)
                                  |++|+||++|+|.   ++++||++|.+|+.
T Consensus        94 i~~~~~i~~~~Ig~~~~Ig~~~~I~---~gv~IG~~~~Igag  132 (194)
T 3tv0_A           94 FEVGCYSQAMKMGDNNVIESKAYVG---RNVILTSGCIIGAC  132 (194)
T ss_dssp             ECTTCEECCSEECSSCEECTTCEEC---TTEEECSSCEECTT
T ss_pred             EecceeEeeeeecccceecceeeEC---CeEEECCCCEECCC
Confidence                        5555556666665   78888888886554

>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A*

Probab=99.31  E-value=1.1e-11  Score=100.77  Aligned_cols=81  Identities=15%  Similarity=0.180  Sum_probs=65.8

Q ss_pred             ccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccC-----CCc----eEEeeCCCeEECCCcEEEecCC
Q psy2215          81 AQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF-----AKG----FLVYPGSTVYLVFTASVRLKSP  151 (172)
Q Consensus        81 ~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~-----~~g----~~~~pGd~V~IG~navI~i~~p  151 (172)
                      ..++.||++++|+++++|. +..+++||++|.|+++|.|....+.+     ..+    -++.+||+|+||++|+|.   |
T Consensus        73 g~~i~IG~~~~I~~~~~i~-~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~---~  148 (203)
T 1krr_A           73 GSNIHIGRNFYANFNLTIV-DDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVIN---P  148 (203)
T ss_dssp             STTEEECSSCEECSCEEEE-CSSCEEECSSCEECSSCEEESEECCSSTTTCTTCCBEECCEEECTTCEECTTCEEC---T
T ss_pred             CCCeEECCeeEECCccEEe-cccceEECCCCEECCCCEEecCCcccchhhcccCceeCCCcEECCCeEECCCCEEe---C
Confidence            3689999999999999998 44679999999999999998553321     111    125669999999999999   9


Q ss_pred             CeEECCCceeCCeE
Q psy2215         152 FAQIYSYIIAPCPL  165 (172)
Q Consensus       152 ga~IGs~v~iga~i  165 (172)
                      +++||+++++|+..
T Consensus       149 gv~IG~~~vIgags  162 (203)
T 1krr_A          149 GVTIGDNSVIGAGS  162 (203)
T ss_dssp             TCEECTTCEECTTC
T ss_pred             CeEECCCCEECCCC
Confidence            99999999977644

>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A

Probab=99.31  E-value=1.4e-11  Score=98.13  Aligned_cols=81  Identities=23%  Similarity=0.321  Sum_probs=65.8

Q ss_pred             ccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCC---------ceEEeeCCCeEECCCcEEEecCC
Q psy2215          81 AQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAK---------GFLVYPGSTVYLVFTASVRLKSP  151 (172)
Q Consensus        81 ~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~---------g~~~~pGd~V~IG~navI~i~~p  151 (172)
                      ..++.||++++|+++++|. |..+++||++|.|+++|+|....+.+..         +-++.+||+|+||++|+|.   |
T Consensus        72 g~~v~IG~~~~i~~~~~i~-~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~~~I~---~  147 (185)
T 2p2o_A           72 GYNIHVGENFFMNFDGVIL-DVCEVRIGDHCFIGPGVHIYTATHPLDPHERNSGLEYGKPVVIGHNVWIGGRAVIN---P  147 (185)
T ss_dssp             STTEEECTTEEECSSEEEE-CSSCEEECTTCEECTTCEEECEECCSSHHHHHTCCBEECCEEECSSCEECTTCEEC---T
T ss_pred             cCCEEECCeeEEcCCeEEE-eccceEECCCcEEeCCCEEEcCCCcCChhhcccCccccCCeEEcCCeEECCCCEEC---C
Confidence            3689999999999999998 4567999999999999999754332210         1125679999999999999   9


Q ss_pred             CeEECCCceeCCeE
Q psy2215         152 FAQIYSYIIAPCPL  165 (172)
Q Consensus       152 ga~IGs~v~iga~i  165 (172)
                      +++||+++.+|+..
T Consensus       148 gv~IG~~~vIgags  161 (185)
T 2p2o_A          148 GVTIGDNAVIASGA  161 (185)
T ss_dssp             TCEECTTCEECTTC
T ss_pred             CCEECCCCEECCCC
Confidence            99999999976643

>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A*

Probab=99.29  E-value=1.8e-11  Score=97.68  Aligned_cols=80  Identities=13%  Similarity=0.077  Sum_probs=65.0

Q ss_pred             cceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccC-----CCce----EEeeCCCeEECCCcEEEecCCC
Q psy2215          82 QNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF-----AKGF----LVYPGSTVYLVFTASVRLKSPF  152 (172)
Q Consensus        82 ~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~-----~~g~----~~~pGd~V~IG~navI~i~~pg  152 (172)
                      .++.||.+++|+++++|. +..++.||++|.|+++|+|+...+.+     ..+.    ++.+||+|+||++|+|.   |+
T Consensus        75 ~~v~IG~~~~I~~~~~i~-~~~~i~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~---~g  150 (195)
T 3nz2_A           75 KTIRIGDHTFINMNVVML-DGAPITIGDHVLIGPSTQFYTASHSLDYRRRQAWETICKPIVIEDDVWIGGNVVIN---QG  150 (195)
T ss_dssp             TTEEECTTCEECTTEEEE-CSSCEEECTTCEECTTCEEECEECCSSGGGTTTCCCEECCEEECTTCEECTTCEEC---TT
T ss_pred             CCeEECCCcEECcCCEEe-cCceEEECCCCEECCCCEEecCCCCcccccccccceecCCeEECCCCEEcCCCEEC---CC
Confidence            589999999999999997 34569999999999999998754322     1111    24669999999999999   99


Q ss_pred             eEECCCceeCCeE
Q psy2215         153 AQIYSYIIAPCPL  165 (172)
Q Consensus       153 a~IGs~v~iga~i  165 (172)
                      ++||+++++|+..
T Consensus       151 v~IG~~~vIgags  163 (195)
T 3nz2_A          151 VTIGARSVVAANS  163 (195)
T ss_dssp             CEECTTCEECTTC
T ss_pred             CEECCCCEECCCC
Confidence            9999999976643

>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified}

Probab=99.29  E-value=1.6e-11  Score=95.77  Aligned_cols=79  Identities=24%  Similarity=0.325  Sum_probs=55.3

Q ss_pred             ccCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCC--CceEEeeCCCeEECCCc
Q psy2215          67 ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFA--KGFLVYPGSTVYLVFTA  144 (172)
Q Consensus        67 ~~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~--~g~~~~pGd~V~IG~na  144 (172)
                      ..+..+.+.+.|.+  ++.||+++.|+++++|+++..++.||++|.|+++++|+.....+.  .+..+.+|++|+||++|
T Consensus        23 g~~~~I~~~~~i~~--~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~  100 (189)
T 3r1w_A           23 GERVFVDRSSVIIG--DVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGDDVTIGHQA  100 (189)
T ss_dssp             CTTCEECTTCEEEE--EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCSSSSTTCBCEEECSSEEECTTC
T ss_pred             CCCcEECCCCEEee--eeEECCCCEECCCCEEecCCCceEECCCCEECCCCEEecCCcccCCCCCCCeEECCCCEECCCC
Confidence            35556677777766  799999999999999998777789999999999999986421110  01123446666555555


Q ss_pred             EEE
Q psy2215         145 SVR  147 (172)
Q Consensus       145 vI~  147 (172)
                      +|.
T Consensus       101 ~i~  103 (189)
T 3r1w_A          101 MLH  103 (189)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            555

>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3

Probab=99.28  E-value=2.4e-11  Score=96.70  Aligned_cols=81  Identities=25%  Similarity=0.354  Sum_probs=65.6

Q ss_pred             ccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCC-----C----ceEEeeCCCeEECCCcEEEecCC
Q psy2215          81 AQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFA-----K----GFLVYPGSTVYLVFTASVRLKSP  151 (172)
Q Consensus        81 ~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~-----~----g~~~~pGd~V~IG~navI~i~~p  151 (172)
                      ..++.||++++|+++++|. +..+++||++|.|+++|.|....+.+.     .    +-++.+||+|+||++|+|.   |
T Consensus        70 g~~v~IG~~~~I~~~~~i~-~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v~Ig~~a~I~---~  145 (182)
T 1ocx_A           70 GYNIFLGNNFFANFDCVML-DVCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVIN---P  145 (182)
T ss_dssp             STTEEECSSEEECSSEEEE-CSSCEEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTTCEECTTCEEC---T
T ss_pred             CCCEEECCCcEEeCCeEEE-eccceEEcCCcEEeCCcEEEeCCCccChhhcccCccccCCeEEeCCeEECCCCEEC---C
Confidence            3689999999999999997 445699999999999999975433221     1    1125679999999999999   9


Q ss_pred             CeEECCCceeCCeE
Q psy2215         152 FAQIYSYIIAPCPL  165 (172)
Q Consensus       152 ga~IGs~v~iga~i  165 (172)
                      +++||+++++|+..
T Consensus       146 gv~IG~~~vIgags  159 (182)
T 1ocx_A          146 GVTIGDNVVVASGA  159 (182)
T ss_dssp             TCEECTTCEECTTC
T ss_pred             CcEECCCCEECCCC
Confidence            99999999976643

>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A

Probab=99.28  E-value=2e-11  Score=95.21  Aligned_cols=79  Identities=23%  Similarity=0.275  Sum_probs=53.8

Q ss_pred             ccCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCC--ceEEeeCCCeEECCCc
Q psy2215          67 ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAK--GFLVYPGSTVYLVFTA  144 (172)
Q Consensus        67 ~~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~--g~~~~pGd~V~IG~na  144 (172)
                      ..+..|.+.+.|.+  ++.||+++.|+++++|+++..++.||++|.|+++|+|+........  +-.+.+||+|+||++|
T Consensus        19 g~~~~I~~~~~i~~--~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~   96 (187)
T 3r3r_A           19 GQRVMIDTSSVVIG--DVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDVTVGHKV   96 (187)
T ss_dssp             CTTCEECTTCEEEE--EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCBTTBC-CBCEEECSSCEECTTC
T ss_pred             CCCeEECCCCEEEC--ceEECCCCEECCCcEEEcCCccEEECCCCEECCCCEEecCCccccCCCCCCeEECCCCEECCCC
Confidence            35556777777766  7999999999999999987667899999999999999643211100  1113445555555555


Q ss_pred             EEE
Q psy2215         145 SVR  147 (172)
Q Consensus       145 vI~  147 (172)
                      +|.
T Consensus        97 ~i~   99 (187)
T 3r3r_A           97 MLH   99 (187)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            555

>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A

Probab=99.26  E-value=3.5e-11  Score=98.98  Aligned_cols=55  Identities=20%  Similarity=0.330  Sum_probs=46.3

Q ss_pred             cccCCeeecCCeEecccceEECCCeEECCCcEEcCCCc-ceEECCCCeeCCCCEEccC
Q psy2215          66 VASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLA-NIRTGRYCIISKGVVIRPP  122 (172)
Q Consensus        66 ~~~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~-~V~IG~~c~Ig~navI~p~  122 (172)
                      ...+..+.+.+.|.|  ++.||+++.|+++|+|+++.. ++.||++|.|+++|+|++.
T Consensus        62 I~~~~~I~~~a~I~g--~v~IG~~~~I~~~~~I~~~~~~~i~IG~~~~Ig~~~~I~~~  117 (247)
T 1qre_A           62 IDPTAYIDPQASVIG--EVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHAL  117 (247)
T ss_dssp             ECTTCEECTTCEEEE--SEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEEC
T ss_pred             ECCCcEECCCCEEeC--CcEECCCCEECCCcEEecCCCCCEEECCCCEECCCeEEEec
Confidence            345666777788876  799999999999999998764 7899999999999999865

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A

Probab=99.26  E-value=2.7e-11  Score=96.93  Aligned_cols=68  Identities=21%  Similarity=0.200  Sum_probs=46.2

Q ss_pred             ccCCchhhhhhccccccCCeeecCCeEecccceEECCCeEECCCcEEcCCCc-ceEECCCCeeCCCCEEcc
Q psy2215          52 ESKSSHKILVYSGAVASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLA-NIRTGRYCIISKGVVIRP  121 (172)
Q Consensus        52 D~~~p~~Ll~~~~~~~~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~-~V~IG~~c~Ig~navI~p  121 (172)
                      ++..||...........+..|.+.+.|.|  ++.||+++.|+++++|+++.. ++.||++|.|+++|+|..
T Consensus        28 ~p~~~~~~~~~~~~i~~~~~I~~~a~i~~--~v~IG~~~~I~~~~~I~~~~~~~v~IG~~~~Ig~~~~I~~   96 (213)
T 3kwd_A           28 APPTPWSRDLAEPEIAPTAYVHSFSNLIG--DVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHG   96 (213)
T ss_dssp             ---------CCCCEECTTCEECTTSEEEE--SEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEE
T ss_pred             CCCccceecCCCCcCCCCCEECCCCEEeC--ceEECCCCEEcCCcEEecCCCCceEECCCCEECCCCEEEe
Confidence            34445543333334456677788888877  689999999999999987643 789999999999988875

>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum}

Probab=99.24  E-value=3.6e-11  Score=95.07  Aligned_cols=54  Identities=22%  Similarity=0.353  Sum_probs=43.6

Q ss_pred             ccCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccC
Q psy2215          67 ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPP  122 (172)
Q Consensus        67 ~~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~  122 (172)
                      ..+..|.+.+.|.|  ++.||+++.|+++++|+++..++.||++|.|+++|+|.+.
T Consensus        37 g~~~~I~~~~~i~~--~v~IG~~~~I~~~~~I~~~~~~i~IG~~~~I~~~~~I~~~   90 (191)
T 3ixc_A           37 DSTAFIAGNARIIG--DVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHTD   90 (191)
T ss_dssp             CTTSEECTTCEEEE--EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEECC-
T ss_pred             CCCCEECCCCEEeC--CcEECCCCEECCCCEEecCCCCeEECCCCEECCCCEEeec
Confidence            35566667777766  7899999999999999887677899999999998888753

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A*

Probab=99.18  E-value=7.5e-11  Score=96.12  Aligned_cols=86  Identities=9%  Similarity=0.037  Sum_probs=48.8

Q ss_pred             CeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEcc------------CCcc------CCCceE
Q psy2215          70 NKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRP------------PFKK------FAKGFL  131 (172)
Q Consensus        70 n~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p------------~~~~------~~~g~~  131 (172)
                      ..+.+.+.|.+  ++.||.++.|+++++|.++   +.||++|.|+++|+|++            ....      ... -.
T Consensus        92 ~~I~~~a~I~~--~v~Ig~~~~I~~~s~I~~~---~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~-~~  165 (240)
T 3r8y_A           92 ARIEPGAIIRD--HVEIGDNAVIMMNATINIG---AVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVIEPPSA-KP  165 (240)
T ss_dssp             SEECTTCEEBS--SCEECTTCEECTTCEECTT---CEECTTCEECTTCEECTTCEECTTCEECTTCEECCCCSCTTS-CC
T ss_pred             CEECCCCEECC--CcEECCCCEECCCCEECCC---CEECCCCEECCCCEECCCCEECCCcEECCCcEECCCccCCCC-CC
Confidence            34455555554  5667777777666666554   34444444433333322            2110      000 01


Q ss_pred             EeeCCCeEECCCcEEEecCCCeEECCCceeCCe
Q psy2215         132 VYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCP  164 (172)
Q Consensus       132 ~~pGd~V~IG~navI~i~~pga~IGs~v~iga~  164 (172)
                      ..+|++|+||++|+|.   ++++||+++.+++.
T Consensus       166 ~~Ig~~~~IG~~~~I~---~~~~Ig~~~~I~~g  195 (240)
T 3r8y_A          166 VIVEDDVVIGANVVVL---EGVTVGKGAVVAAG  195 (240)
T ss_dssp             CEECTTCEECTTCEEC---TTCEECTTCEECTT
T ss_pred             cEECCCCEECCCCEEC---CCcEECCCCEECCC
Confidence            3458899999999886   68888888886553

>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli}

Probab=99.18  E-value=1.3e-10  Score=95.74  Aligned_cols=94  Identities=14%  Similarity=0.145  Sum_probs=70.7

Q ss_pred             CCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccC----------CCceEEeeCCCe
Q psy2215          69 GNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF----------AKGFLVYPGSTV  138 (172)
Q Consensus        69 gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~----------~~g~~~~pGd~V  138 (172)
                      +..|...+.|....++.||+++.|++++.|.++...+.||++|.||++|+|.......          ...-.+.+||+|
T Consensus        91 ~~~I~~~~~i~~g~~v~IG~~~~Ig~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~v~Igd~v  170 (252)
T 3jqy_B           91 NSKIKGDIVATKGSKVIIGRRTTIGAGFEVVTDKCNVTIGHDCMIARDVILRASDGHPIFDIHSKKRINWAKDIIISSYV  170 (252)
T ss_dssp             TCEEEEEEEEESSCEEEECTTCEECTTCEEECSSSEEEECTTCEECSSEEEECSCSSCEEETTTCBBCCCCCCEEECSSC
T ss_pred             CCEECCceEEccCCEEEECCCCEECCCcEEEeCCCCeEECCCCEEcCCcEEecCCCcccccccccccccccCCeEEecCc
Confidence            3334444455445679999999999999999866679999999999999998752100          000114669999


Q ss_pred             EECCCcEEEecCCCeEECCCceeCCeE
Q psy2215         139 YLVFTASVRLKSPFAQIYSYIIAPCPL  165 (172)
Q Consensus       139 ~IG~navI~i~~pga~IGs~v~iga~i  165 (172)
                      +||++|+|.   |+++||+++++|+..
T Consensus       171 ~IG~~a~I~---~gv~IG~~~~Igags  194 (252)
T 3jqy_B          171 WVGRNVSIM---KGVSVGSGSVIGYGS  194 (252)
T ss_dssp             EECSSEEEC---TTCEECTTCEECTTC
T ss_pred             EECCCCEEC---CCCEECCCCEECCCC
Confidence            999999999   999999999976543

>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A

Probab=99.17  E-value=1.3e-10  Score=90.28  Aligned_cols=91  Identities=24%  Similarity=0.346  Sum_probs=59.4

Q ss_pred             cCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCC----cc-----CCCceE---EeeC
Q psy2215          68 SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPF----KK-----FAKGFL---VYPG  135 (172)
Q Consensus        68 ~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~----~~-----~~~g~~---~~pG  135 (172)
                      .+..+.+.+.|.|  ++.||+++.|+++++|+++..++.||++|.|+++|+|....    ..     +..+..   ..+|
T Consensus        15 ~~~~I~~~a~i~g--~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig   92 (173)
T 1v3w_A           15 PSAFVDENAVVIG--DVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAKVG   92 (173)
T ss_dssp             TTCEECTTSEEEE--EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEESCEEC
T ss_pred             CCCEECCCCEEeC--CEEECCCCEECCCeEEecCCceEEECCCCEECCCcEEEecCCCCeEECCCCEECCCCEECCCEEC
Confidence            4556667777776  68888888888888888766678888888888888887531    00     000000   1236


Q ss_pred             CCeEECCCcEEEecCCCeEECCCceeCC
Q psy2215         136 STVYLVFTASVRLKSPFAQIYSYIIAPC  163 (172)
Q Consensus       136 d~V~IG~navI~i~~pga~IGs~v~iga  163 (172)
                      |+|+||++|+|.   ++++||+++.+++
T Consensus        93 ~~~~Ig~~~~i~---~~~~Ig~~~~Ig~  117 (173)
T 1v3w_A           93 NYVIIGISSVIL---DGAKIGDHVIIGA  117 (173)
T ss_dssp             SSEEECTTCEEC---TTCEECSSEEECT
T ss_pred             CCCEECCCCEEe---CCCEECCCCEECC
Confidence            666666666666   6666666666444

>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A

Probab=99.17  E-value=1.7e-10  Score=89.56  Aligned_cols=91  Identities=11%  Similarity=0.096  Sum_probs=60.1

Q ss_pred             cCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCC----cc-----CCCceE---EeeC
Q psy2215          68 SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPF----KK-----FAKGFL---VYPG  135 (172)
Q Consensus        68 ~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~----~~-----~~~g~~---~~pG  135 (172)
                      .+..|.+.+.|.|  ++.||+++.|+++++|+++..++.||++|.|+++|+|....    ..     +..+..   ..+|
T Consensus        17 ~~~~I~~~~~i~~--~v~IG~~~~I~~~~~i~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig   94 (173)
T 1xhd_A           17 SSAFIADYVTITG--DVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHSCHIK   94 (173)
T ss_dssp             TTCEECTTCEEEE--EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEESCEEC
T ss_pred             CCcEECCCCEEEC--CEEECCCcEEcCCcEEecCCCeEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCCEEeCCEEC
Confidence            4555666677765  68888888888888888765668888888888888887431    10     001100   1336


Q ss_pred             CCeEECCCcEEEecCCCeEECCCceeCC
Q psy2215         136 STVYLVFTASVRLKSPFAQIYSYIIAPC  163 (172)
Q Consensus       136 d~V~IG~navI~i~~pga~IGs~v~iga  163 (172)
                      |+|+||++|+|.   ++++||+++.+++
T Consensus        95 ~~~~Ig~~~~i~---~~~~Ig~~~~Ig~  119 (173)
T 1xhd_A           95 KDALIGMGSIIL---DGAEIGEGAFIGA  119 (173)
T ss_dssp             TTCEECTTCEEC---TTCEECTTCEECT
T ss_pred             CCCEEcCCCEEc---CCCEECCCCEECC
Confidence            777777777766   6677777776544

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A*

Probab=99.14  E-value=2.7e-10  Score=89.32  Aligned_cols=89  Identities=11%  Similarity=-0.011  Sum_probs=54.9

Q ss_pred             CCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCC--------------------
Q psy2215          69 GNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAK--------------------  128 (172)
Q Consensus        69 gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~--------------------  128 (172)
                      +..|...+.|.+  ++.||+++.|++++.|..+   ++||++|.|++++.|+.....-..                    
T Consensus        21 ~~~I~~~~~I~~--~~~IG~~~~Ig~~~~I~~~---~~IG~~~~I~~~~~I~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~   95 (192)
T 3mqg_A           21 HSRIWHWVHICG--GAEIGEGCSLGQNVFVGNR---VRIGNRVKIQNNVSVYDNVFLEDDVFCGPSMVFTNVYNPRAAIE   95 (192)
T ss_dssp             TCEECTTCEECT--TCEECTTCEECTTCEECSS---CEECSSCEECTTCEECTTEEECTTCEECTTCBCCSCSSCBTTBC
T ss_pred             CCEECCCCEECC--CcEECCCCEECCCEEECCc---eEECCCcEEcCCcEEeCCCEECCCCEECCceEEecccCCccccc
Confidence            333444444443  4666666666666666554   566666666665555433211000                    


Q ss_pred             ----ceEEeeCCCeEECCCcEEEecCCCeEECCCceeCCeE
Q psy2215         129 ----GFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCPL  165 (172)
Q Consensus       129 ----g~~~~pGd~V~IG~navI~i~~pga~IGs~v~iga~i  165 (172)
                          .-.+.+|++|+||++|+|.   ++++||+++.+++..
T Consensus        96 ~~~~~~~~~Ig~~v~IG~~~~I~---~g~~Ig~~~~Igags  133 (192)
T 3mqg_A           96 RKSEYRDTIVRQGATLGANCTVV---CGATIGRYAFVGAGA  133 (192)
T ss_dssp             CGGGCCCEEECTTCEECTTCEEC---TTCEECTTCEECTTC
T ss_pred             cccccCCcEECCCcEECCCCEEC---CCCEECCCCEEcCCC
Confidence                0114569999999999999   999999999976643

>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified}

Probab=99.14  E-value=2.9e-10  Score=88.54  Aligned_cols=85  Identities=14%  Similarity=0.133  Sum_probs=68.9

Q ss_pred             ccCCeeecCCeEecc-cceEECCCeEECCCcEEcCC--------CcceEECCCCeeCCCCEEccCCccCCCceEEeeCCC
Q psy2215          67 ASGNKVSRKSLVAGA-QNIVLTGKVIIQCDAVLRGD--------LANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGST  137 (172)
Q Consensus        67 ~~gn~Is~~a~I~G~-~nI~Igg~v~I~~~avIrGd--------l~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~  137 (172)
                      ..+..|...+.|.|. .++.||+++.|+++++|...        ..++.||++|.|+++|.|++          +.+|++
T Consensus        41 G~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~----------~~Ig~~  110 (189)
T 3r1w_A           41 GDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGDDVTIGHQAMLHG----------CTIGNR  110 (189)
T ss_dssp             CTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCSSSSTTCBCEEECSSEEECTTCEEES----------CEECSS
T ss_pred             CCCCEECCCCEEecCCCceEECCCCEECCCCEEecCCcccCCCCCCCeEECCCCEECCCCEEeC----------cEECCC
Confidence            355667778888754 57899999999999999862        34799999999999999986          346999


Q ss_pred             eEECCCcEEEecCCCeEECCCceeCCe
Q psy2215         138 VYLVFTASVRLKSPFAQIYSYIIAPCP  164 (172)
Q Consensus       138 V~IG~navI~i~~pga~IGs~v~iga~  164 (172)
                      |+||++|+|.   ++++||+++.+++.
T Consensus       111 ~~Ig~~~~i~---~~v~Ig~~~~Ig~~  134 (189)
T 3r1w_A          111 VLIGMKSMIM---DGAIVEDEVIVAAG  134 (189)
T ss_dssp             EEECTTCEEC---TTCEECSSCEECTT
T ss_pred             cEECCCCEEc---CCCEECCCCEEccC
Confidence            9999999988   78888888886544

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=99.13  E-value=2.3e-10  Score=91.73  Aligned_cols=31  Identities=26%  Similarity=0.127  Sum_probs=25.1

Q ss_pred             EeeCCCeEECCCcEEEecCCCeEECCCceeCCeE
Q psy2215         132 VYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCPL  165 (172)
Q Consensus       132 ~~pGd~V~IG~navI~i~~pga~IGs~v~iga~i  165 (172)
                      +.+||+|+||++|+|.   ++++||+++.+|+..
T Consensus       166 v~Ig~~~~Ig~~~~i~---~~~~Ig~~~~igags  196 (220)
T 4ea9_A          166 VSVGERAFLGVGARVI---PGVTIGADTIVGAGG  196 (220)
T ss_dssp             CEECTTCEECTTCEEC---TTCEECTTCEECTTC
T ss_pred             CEECCCCEECCCCEEc---CCcEECCCCEECCCC
Confidence            3458999999999988   889999999876543

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*

Probab=99.12  E-value=1.8e-10  Score=100.83  Aligned_cols=79  Identities=13%  Similarity=0.230  Sum_probs=50.5

Q ss_pred             eeccceecccCCchhhhhhccccccCC-----------eeecCCeEecc---cceEECCCeEECCCcEEcC-CCcceEEC
Q psy2215          44 FLSRGWWFESKSSHKILVYSGAVASGN-----------KVSRKSLVAGA---QNIVLTGKVIIQCDAVLRG-DLANIRTG  108 (172)
Q Consensus        44 ~~~~g~W~D~~~p~~Ll~~~~~~~~gn-----------~Is~~a~I~G~---~nI~Igg~v~I~~~avIrG-dl~~V~IG  108 (172)
                      +..+++|.|+++|++|+.++.......           .+...+.|...   .+..| .++.|+++|+|.+ .+.++.||
T Consensus       272 ~~~~~~w~digt~~~l~~a~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~I-~~~~Ig~~~~I~~~~i~~~~Ig  350 (451)
T 1yp2_A          272 YLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADV-TDSVIGEGCVIKNCKIHHSVVG  350 (451)
T ss_dssp             EECCSCCEECSSHHHHHHHHHGGGCSSSCSSCSCCSSSCCCCCCCCCCCEEEEEEEE-EEEEECTTCEEEEEEEESCEEC
T ss_pred             EEeCCEEEECCCHHHHHHHHHHHhcccccchhccCCCCeeccCCccCCCeEEcceEE-eCeEECCCCEEcceEEeccEEC
Confidence            456789999999999988876554322           12222222111   23444 3466666666664 11258999


Q ss_pred             CCCeeCCCCEEccCC
Q psy2215         109 RYCIISKGVVIRPPF  123 (172)
Q Consensus       109 ~~c~Ig~navI~p~~  123 (172)
                      ++|.||++|+|+...
T Consensus       351 ~~~~Ig~~~~I~~~~  365 (451)
T 1yp2_A          351 LRSCISEGAIIEDSL  365 (451)
T ss_dssp             TTCEECTTCEEESCE
T ss_pred             CCCEECCCCEEcCce
Confidence            999999999998763

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A

Probab=99.12  E-value=3.4e-10  Score=90.53  Aligned_cols=83  Identities=16%  Similarity=0.202  Sum_probs=66.3

Q ss_pred             cCCeeecCCeEecc--cceEECCCeEECCCcEEcCCC-----------cceEECCCCeeCCCCEEccCCccCCCceEEee
Q psy2215          68 SGNKVSRKSLVAGA--QNIVLTGKVIIQCDAVLRGDL-----------ANIRTGRYCIISKGVVIRPPFKKFAKGFLVYP  134 (172)
Q Consensus        68 ~gn~Is~~a~I~G~--~nI~Igg~v~I~~~avIrGdl-----------~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~p  134 (172)
                      .+..|...+.|.+.  .++.||+++.|+++++|.+..           .++.||++|.|++++.|.++         +.+
T Consensus        62 ~~~~I~~~~~I~~~~~~~v~IG~~~~Ig~~~~I~~~~~~~~ig~~~~~~~~~IG~~v~Ig~~~~I~~~---------v~I  132 (213)
T 3kwd_A           62 DYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQGRVIGDDGQEYSVWIGDNVSITHMALIHGP---------AYI  132 (213)
T ss_dssp             TTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECSSCCEECTTSCEESEEECTTCEECTTCEEEEE---------EEE
T ss_pred             CCCEEcCCcEEecCCCCceEECCCCEECCCCEEEecCCCceeccCCcccceEECCCcEECCCcEEcCC---------CEE
Confidence            45556677778775  469999999999999998521           14899999999999999875         567


Q ss_pred             CCCeEECCCcEEEecCCCeEECCCceeCC
Q psy2215         135 GSTVYLVFTASVRLKSPFAQIYSYIIAPC  163 (172)
Q Consensus       135 Gd~V~IG~navI~i~~pga~IGs~v~iga  163 (172)
                      ||+|+||++|+|.    +++||+++.+|+
T Consensus       133 g~~v~IG~~a~I~----~~~Ig~~~~Iga  157 (213)
T 3kwd_A          133 GDGCFIGFRSTVF----NARVGAGCVVMM  157 (213)
T ss_dssp             CTTCEECTTCEEE----EEEECTTCEECS
T ss_pred             CCCCEECCCCEEe----CcEECCCCEEcC
Confidence            9999999999999    677777777544

>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A

Probab=99.10  E-value=5e-10  Score=87.25  Aligned_cols=84  Identities=14%  Similarity=0.099  Sum_probs=67.0

Q ss_pred             cCCeeecCCeEeccc-ceEECCCeEECCCcEEcCC--------CcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCe
Q psy2215          68 SGNKVSRKSLVAGAQ-NIVLTGKVIIQCDAVLRGD--------LANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTV  138 (172)
Q Consensus        68 ~gn~Is~~a~I~G~~-nI~Igg~v~I~~~avIrGd--------l~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V  138 (172)
                      .+..|...+.|.+.. ++.||+++.|++++.|..+        ..++.||++|.|+++|+|++          ..+||+|
T Consensus        38 ~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~----------~~Ig~~~  107 (187)
T 3r3r_A           38 DDVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDVTVGHKVMLHG----------CTIGNRV  107 (187)
T ss_dssp             TTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCBTTBC-CBCEEECSSCEECTTCEEES----------CEECSSE
T ss_pred             CCCEECCCcEEEcCCccEEECCCCEECCCCEEecCCccccCCCCCCeEECCCCEECCCCEEeC----------cEECCCC
Confidence            455566777777642 6899999999999999522        24699999999999999976          3469999


Q ss_pred             EECCCcEEEecCCCeEECCCceeCCe
Q psy2215         139 YLVFTASVRLKSPFAQIYSYIIAPCP  164 (172)
Q Consensus       139 ~IG~navI~i~~pga~IGs~v~iga~  164 (172)
                      +||++|+|.   ++++||+++.+++.
T Consensus       108 ~Ig~~~~I~---~~~~Ig~~~~Ig~~  130 (187)
T 3r3r_A          108 LVGMGSIVL---DGAIIEDDVMIGAG  130 (187)
T ss_dssp             EECTTCEEC---TTCEECSSEEECTT
T ss_pred             EECCCCEEC---CCCEECCCCEECCC
Confidence            999999998   78888888886554

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}

Probab=99.09  E-value=2.4e-10  Score=99.42  Aligned_cols=102  Identities=8%  Similarity=-0.006  Sum_probs=65.9

Q ss_pred             cceecccCCchhhhhhccccccCCe----------eecCCeEecccceEECC----------CeEECCCcEEcCC-Ccce
Q psy2215          47 RGWWFESKSSHKILVYSGAVASGNK----------VSRKSLVAGAQNIVLTG----------KVIIQCDAVLRGD-LANI  105 (172)
Q Consensus        47 ~g~W~D~~~p~~Ll~~~~~~~~gn~----------Is~~a~I~G~~nI~Igg----------~v~I~~~avIrGd-l~~V  105 (172)
                      +++|.|.++|+|++.++...+....          +...+.+..  ...++.          ++.|+++|+|.+- +.++
T Consensus       264 ~~~~~dI~t~~d~~~a~~~ll~~~~~~~~~~~~~~i~~~~~i~~--~~~i~~~~~~~~~~i~~~~ig~~~~I~~~~i~~~  341 (420)
T 3brk_X          264 EPYWRDVGTIDAYWQANIDLTDVVPDLDIYDKSWPIWTYAEITP--PAKFVHDDEDRRGSAVSSVVSGDCIISGAALNRS  341 (420)
T ss_dssp             SCCEECCCSHHHHHHHHHHTTSSSCSSCTTCCSSCCCCCCCCCC--CCEEECBCSSCBCEEESCEECSSCEEESCEEESC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCchhhcCCCCCceeeccccCC--CcEEecccccCCcEecCCEECCCCEEcCCEEeCc
Confidence            7899999999999888765543211          111111111  122222          5555555555221 1247


Q ss_pred             EECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECCCceeCCe
Q psy2215         106 RTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCP  164 (172)
Q Consensus       106 ~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~iga~  164 (172)
                      .||++|.|+++|.|..          ..+|++|+||++|+|.    ++.||+++.+|+.
T Consensus       342 ~ig~~~~I~~~~~i~~----------~~i~~~~~i~~~~~i~----~~~ig~~~~i~~~  386 (420)
T 3brk_X          342 LLFTGVRANSYSRLEN----------AVVLPSVKIGRHAQLS----NVVIDHGVVIPEG  386 (420)
T ss_dssp             EECTTCEECTTCEEEE----------EEECTTCEECTTCEEE----EEEECTTCEECTT
T ss_pred             EEcCCCEECCCCEEcc----------eEEcCCCEECCCCEEe----ceEECCCCEECCC
Confidence            8888888888888874          4569999999999999    6777777775544

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A*

Probab=99.07  E-value=7.3e-10  Score=86.81  Aligned_cols=75  Identities=15%  Similarity=0.145  Sum_probs=57.5

Q ss_pred             CeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEec
Q psy2215          70 NKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLK  149 (172)
Q Consensus        70 n~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~  149 (172)
                      ..|++.+.|.+  ++.|++++.|+++++|+++   ++||++|.|+++++|++.         +.+|++|.|++++.|.  
T Consensus         4 ~~I~p~a~I~~--~~~Ig~~~~I~~~~~I~~~---~~IG~~~~Ig~~~~I~~~---------~~IG~~~~I~~~~~I~--   67 (192)
T 3mqg_A            4 ATIHPTAIVDE--GARIGAHSRIWHWVHICGG---AEIGEGCSLGQNVFVGNR---------VRIGNRVKIQNNVSVY--   67 (192)
T ss_dssp             CEECTTCEECT--TCEECTTCEECTTCEECTT---CEECTTCEECTTCEECSS---------CEECSSCEECTTCEEC--
T ss_pred             CEECCCcEECC--CCEECCCCEECCCCEECCC---cEECCCCEECCCEEECCc---------eEECCCcEEcCCcEEe--
Confidence            45677777765  6899999999999999987   899999999999999876         4457777777777775  


Q ss_pred             CCCeEECCCcee
Q psy2215         150 SPFAQIYSYIIA  161 (172)
Q Consensus       150 ~pga~IGs~v~i  161 (172)
                       .++.||+++.+
T Consensus        68 -~~~~Ig~~~~i   78 (192)
T 3mqg_A           68 -DNVFLEDDVFC   78 (192)
T ss_dssp             -TTEEECTTCEE
T ss_pred             -CCCEECCCCEE
Confidence             45555555543

>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A*

Probab=99.07  E-value=1.9e-09  Score=86.40  Aligned_cols=94  Identities=14%  Similarity=0.164  Sum_probs=68.4

Q ss_pred             CCeeecCCeEecc-cceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCC-ccC---------CCceEEeeCCC
Q psy2215          69 GNKVSRKSLVAGA-QNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPF-KKF---------AKGFLVYPGST  137 (172)
Q Consensus        69 gn~Is~~a~I~G~-~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~-~~~---------~~g~~~~pGd~  137 (172)
                      +..|.+.+.|.+. .++.||+++.|++.+++.++..++.||++|.|+++|+|.... +.+         ...-.+.+||+
T Consensus        64 ~~~I~~~~~i~~~~~~~~IG~~~~Ig~~~ii~~~~~~i~IG~~~~Ig~~~~I~~~~~h~~~~~~~~~~~~~~~~v~Igd~  143 (215)
T 2wlg_A           64 DVEIMGLVCSLHSDCSLQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYEIRNTDMHPIYSLENGERINHGKDVIIGNH  143 (215)
T ss_dssp             TCEEESEEEEECTTCEEEECTTCEECSEEEEECTTCEEEECTTCEECTTEEEESCCSSCEEETTTCBBCCCCCCEEECTT
T ss_pred             CCEECCCeEEEcCCceEEEcCCCEECCEEEEEeCCCCEEECCCCEEcCCEEEECCCCcccccccccccccCCCCeEECCC
Confidence            3344444555542 358889999998877776554579999999999999999741 110         01112567999


Q ss_pred             eEECCCcEEEecCCCeEECCCceeCCeE
Q psy2215         138 VYLVFTASVRLKSPFAQIYSYIIAPCPL  165 (172)
Q Consensus       138 V~IG~navI~i~~pga~IGs~v~iga~i  165 (172)
                      |+||++|+|.   ++++||+++.+++..
T Consensus       144 v~IG~~~~I~---~gv~Ig~~~vIgags  168 (215)
T 2wlg_A          144 VWLGRNVTIL---KGVCIPNNVVVGSHT  168 (215)
T ss_dssp             CEECTTCEEC---TTCEECSSCEECTTC
T ss_pred             cEECCCCEEC---CCCEECCCCEECCCC
Confidence            9999999999   999999999976653

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=99.05  E-value=5e-10  Score=97.28  Aligned_cols=113  Identities=11%  Similarity=0.029  Sum_probs=61.0

Q ss_pred             eecccee--cccCCchhhhhhccccc---------cCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCe
Q psy2215          44 FLSRGWW--FESKSSHKILVYSGAVA---------SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCI  112 (172)
Q Consensus        44 ~~~~g~W--~D~~~p~~Ll~~~~~~~---------~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~  112 (172)
                      +..+++|  ++.++|+||..+..+..         .+..+...+...-..++.|+.++.|+++|+|.++   +.||++|.
T Consensus       218 ~~~~~~~~~~~I~tp~Dl~~ae~~l~~~~~~~l~~~~~~~~~p~~~~~~~~~~ig~~~~i~~~~~i~~~---~~ig~~~~  294 (459)
T 4fce_A          218 VHPTRLSEVEGVNNRLQLSALERVFQTEQAEKLLLAGVMLLDPSRFDLRGELTHGRDITIDTNVIIEGH---VILGDRVR  294 (459)
T ss_dssp             ECCSSGGGGCCCSSHHHHHHHHHHHHHHHHHHHHHHTCEESCGGGEEEEEEEEECSSCEECTTEEEEEE---EEECTTCE
T ss_pred             EEcCCHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEEeCcEEECCCcEECCCeeeccc---eEECCCCE
Confidence            3445545  66999999877653322         2333322222222235666777777777777665   66666666


Q ss_pred             eCCCCEEccCCccC-----CCceE---EeeCCCeEECCCcEEEecCCCeEECCCceeCC
Q psy2215         113 ISKGVVIRPPFKKF-----AKGFL---VYPGSTVYLVFTASVRLKSPFAQIYSYIIAPC  163 (172)
Q Consensus       113 Ig~navI~p~~~~~-----~~g~~---~~pGd~V~IG~navI~i~~pga~IGs~v~iga  163 (172)
                      |+++|+|+. ...-     ..+..   ..+|++|.||++|.|.   +++.||+++.+|.
T Consensus       295 I~~~~~i~~-~~Ig~~~~I~~~~~i~~~~Ig~~~~ig~~~~i~---~~~~ig~~~~Ig~  349 (459)
T 4fce_A          295 IGTGCVLKN-CVIGDDSEISPYTVLEDARLDANCTVGPFARLR---PGAELAEGAHVGN  349 (459)
T ss_dssp             ECTTCEEES-CEECTTCEECSSCEEESCEECTTCEECSSEEEC---TTCEECTTCEEEE
T ss_pred             ECCCCEEec-cEECCCCEECCCcEEeCCEECCCCEECCccEEC---CCcEECCCcEECC
Confidence            666665552 1100     00000   2346677777777776   5666666655444

>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A

Probab=99.04  E-value=1e-09  Score=90.15  Aligned_cols=83  Identities=13%  Similarity=0.118  Sum_probs=67.2

Q ss_pred             cCCeeecCCeEeccc--ceEECCCeEECCCcEEcCCC--------------------cceEECCCCeeCCCCEEccCCcc
Q psy2215          68 SGNKVSRKSLVAGAQ--NIVLTGKVIIQCDAVLRGDL--------------------ANIRTGRYCIISKGVVIRPPFKK  125 (172)
Q Consensus        68 ~gn~Is~~a~I~G~~--nI~Igg~v~I~~~avIrGdl--------------------~~V~IG~~c~Ig~navI~p~~~~  125 (172)
                      .+..|.+.+.|.+..  ++.||.++.|+++|+|....                    .++.||++|.|+++|+|..+   
T Consensus        82 ~~~~I~~~~~I~~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~g~~~~~~~~~~~~~~~~v~IG~~v~Ig~~~~I~~~---  158 (247)
T 1qre_A           82 ANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGP---  158 (247)
T ss_dssp             TTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEESEEECTTCEECTTCEEEEE---
T ss_pred             CCCEECCCcEEecCCCCCEEECCCCEECCCeEEEecccccccCcccccceeeccCccCceEECCCCEECCCCEEcCC---
Confidence            455566777777764  78999999999999997542                    25999999999999999875   


Q ss_pred             CCCceEEeeCCCeEECCCcEEEecCCCeEECCCceeCC
Q psy2215         126 FAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPC  163 (172)
Q Consensus       126 ~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~iga  163 (172)
                            ..+||+|+||++|+|.    +++||+++.+|+
T Consensus       159 ------~~Ig~~v~IG~~a~I~----~v~Ig~~~~Iga  186 (247)
T 1qre_A          159 ------AAVGDDTFIGMQAFVF----KSKVGNNCVLEP  186 (247)
T ss_dssp             ------EEECTTCEECTTCEEE----EEEECTTCEECT
T ss_pred             ------cEECCCCEECCCCEEe----ceEECCCCEECC
Confidence                  5579999999999998    488888877543

>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum}

Probab=99.02  E-value=1.8e-09  Score=85.28  Aligned_cols=83  Identities=13%  Similarity=0.199  Sum_probs=65.9

Q ss_pred             cCCeeecCCeEecc-cceEECCCeEECCCcEEcCCC--cceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCc
Q psy2215          68 SGNKVSRKSLVAGA-QNIVLTGKVIIQCDAVLRGDL--ANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTA  144 (172)
Q Consensus        68 ~gn~Is~~a~I~G~-~nI~Igg~v~I~~~avIrGdl--~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~na  144 (172)
                      .+..|...+.|.+. .++.||+++.|+++++|....  .++.||++|.|+++++|.+          ..+||+|+||++|
T Consensus        56 ~~~~I~~~~~I~~~~~~i~IG~~~~I~~~~~I~~~~~~g~~~Ig~~~~Ig~~~~i~~----------~~Ig~~~~Ig~~~  125 (191)
T 3ixc_A           56 KNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHTDSMHGDTVIGKFVTIGHSCILHA----------CTLGNNAFVGMGS  125 (191)
T ss_dssp             TTCEECTTCEEEEEEEEEEECTTCEECTTCEECC----CCEEECTTCEECTTCEECS----------CEECTTCEECTTC
T ss_pred             CCCEECCCCEEecCCCCeEECCCCEECCCCEEeecCCcCCeEECCCCEECCCCEEEC----------CEECCCCEECCCC
Confidence            55556677778754 478999999999999998421  1599999999999999876          3469999999999


Q ss_pred             EEEecCCCeEECCCceeCC
Q psy2215         145 SVRLKSPFAQIYSYIIAPC  163 (172)
Q Consensus       145 vI~i~~pga~IGs~v~iga  163 (172)
                      +|.   ++++||+++.+++
T Consensus       126 ~I~---~~~~Ig~~~~Ig~  141 (191)
T 3ixc_A          126 IVM---DRAVMEEGSMLAA  141 (191)
T ss_dssp             EEC---TTCEECTTCEECT
T ss_pred             EEe---CCeEECCCCEECC
Confidence            998   7788888888654

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A

Probab=99.01  E-value=1.7e-09  Score=85.77  Aligned_cols=86  Identities=15%  Similarity=0.181  Sum_probs=46.6

Q ss_pred             eecCCeEecccceEEC--CCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccC-----CCceE----EeeCCCeEE
Q psy2215          72 VSRKSLVAGAQNIVLT--GKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF-----AKGFL----VYPGSTVYL  140 (172)
Q Consensus        72 Is~~a~I~G~~nI~Ig--g~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~-----~~g~~----~~pGd~V~I  140 (172)
                      +++.+.+.  .+..|+  ++++|+++++|..+   ++||++|.|+++++|..+...-     ..+..    ..+|++|+|
T Consensus        78 i~~~a~i~--~~~~Ig~~~g~~I~~~~~I~~~---~~IG~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I  152 (194)
T 3bfp_A           78 IHKSALIS--PSAIVEENAGILIMPYVVINAK---AKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFL  152 (194)
T ss_dssp             ECTTCEEC--TTCEECTTSCCEECTTCEECTT---CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             cCCeEEEC--CCceeCCCCCcEEcCCCEECCC---CEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCcEECCCCEE
Confidence            44444443  245566  66666666666544   4555555554444444322100     00000    345788888


Q ss_pred             CCCcEEEecCCCeEECCCceeCCeE
Q psy2215         141 VFTASVRLKSPFAQIYSYIIAPCPL  165 (172)
Q Consensus       141 G~navI~i~~pga~IGs~v~iga~i  165 (172)
                      |++++|.   ++++||+++.+|+..
T Consensus       153 g~~~~i~---~~~~Ig~~~~Igags  174 (194)
T 3bfp_A          153 GINSCVL---PNLSLADDSILGGGA  174 (194)
T ss_dssp             CTTCEEC---TTCEECTTCEECTTC
T ss_pred             cCCCEEC---CCCEECCCCEECCCC
Confidence            8888877   778888887765543

>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A

Probab=98.99  E-value=2.7e-09  Score=82.83  Aligned_cols=80  Identities=21%  Similarity=0.219  Sum_probs=47.0

Q ss_pred             CeeecCCeEecc-cceEECCCeEECCCcEEcCC-CcceEECCCC-----------------eeCCCCEEccCCccCCCce
Q psy2215          70 NKVSRKSLVAGA-QNIVLTGKVIIQCDAVLRGD-LANIRTGRYC-----------------IISKGVVIRPPFKKFAKGF  130 (172)
Q Consensus        70 n~Is~~a~I~G~-~nI~Igg~v~I~~~avIrGd-l~~V~IG~~c-----------------~Ig~navI~p~~~~~~~g~  130 (172)
                      ..|...+.|.+. .++.||+++.|+++++|... ..++.||++|                 .||++++|.+.        
T Consensus        35 ~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~--------  106 (173)
T 1v3w_A           35 TSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAKVGNYVIIGISSVILDG--------  106 (173)
T ss_dssp             CEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEESCEECSSEEECTTCEECTT--------
T ss_pred             CEECCCeEEecCCceEEECCCCEECCCcEEEecCCCCeEECCCCEECCCCEECCCEECCCCEECCCCEEeCC--------
Confidence            334444444431 23555555555555555532 1124444444                 44444444443        


Q ss_pred             EEeeCCCeEECCCcEEEecCCCeEECCCcee
Q psy2215         131 LVYPGSTVYLVFTASVRLKSPFAQIYSYIIA  161 (172)
Q Consensus       131 ~~~pGd~V~IG~navI~i~~pga~IGs~v~i  161 (172)
                       +.+|++++||++++|.   +++.|++++++
T Consensus       107 -~~Ig~~~~Ig~~s~V~---~~~~i~~~~~v  133 (173)
T 1v3w_A          107 -AKIGDHVIIGAGAVVP---PNKEIPDYSLV  133 (173)
T ss_dssp             -CEECSSEEECTTCEEC---TTCEECTTEEE
T ss_pred             -CEECCCCEECCCCEEC---CCcEeCCCcEE
Confidence             3459999999999998   78999999885

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A*

Probab=98.99  E-value=2.6e-09  Score=86.96  Aligned_cols=59  Identities=15%  Similarity=0.084  Sum_probs=36.0

Q ss_pred             ceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215          83 NIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR  147 (172)
Q Consensus        83 nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~  147 (172)
                      +..|++++.|+++|+|...   ..|+.+|.||++|+|.+.......   +.+|++|+||++|++.
T Consensus        97 ~a~I~~~v~Ig~~~~I~~~---s~I~~~~~IG~~~~I~~~~~I~~~---~~IG~~~~I~~~~~i~  155 (240)
T 3r8y_A           97 GAIIRDHVEIGDNAVIMMN---ATINIGAVIGEGSMIDMNAVLGGR---ATVGKNCHVGAGAVLA  155 (240)
T ss_dssp             TCEEBSSCEECTTCEECTT---CEECTTCEECTTCEECTTCEECTT---CEECTTCEECTTCEEC
T ss_pred             CCEECCCcEECCCCEECCC---CEECCCCEECCCCEECCCCEECCC---CEECCCcEECCCcEEC
Confidence            4556666666666666543   667777777777777765331111   3457777777777774

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A*

Probab=98.98  E-value=3.3e-09  Score=87.14  Aligned_cols=50  Identities=10%  Similarity=0.278  Sum_probs=33.7

Q ss_pred             cCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccC
Q psy2215          68 SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPP  122 (172)
Q Consensus        68 ~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~  122 (172)
                      .+..|.+.+.|.+  ++.|+++++|+++|+|.++   +.||++|.|+++|+|++.
T Consensus         7 ~~~~I~~~a~I~~--~~~Ig~~~~Ig~~~~I~~~---v~Ig~~~~I~~~~~I~~~   56 (273)
T 3fs8_A            7 KSAIIKEGVIIGE--NVTIEDNVYIDYGCIIRDN---VHIKKGSFIGARSILGEY   56 (273)
T ss_dssp             TTCEECTTCEECS--SEEECTTCEECTTCEECSS---EEECTTCEECTTCEEEEC
T ss_pred             CCeEECCCcEECC--CCEECCCcEECCCCEECCC---CEECCCcEECCCcEeCCc
Confidence            3444555555543  6777777777777777766   777777777777777654

>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A

Probab=98.96  E-value=4.4e-09  Score=81.49  Aligned_cols=82  Identities=11%  Similarity=0.096  Sum_probs=49.1

Q ss_pred             cCCeeecCCeEecc-cceEECCCeEECCCcEEcCCC-cceEECCCCeeCCC-----------------CEEccCCccCCC
Q psy2215          68 SGNKVSRKSLVAGA-QNIVLTGKVIIQCDAVLRGDL-ANIRTGRYCIISKG-----------------VVIRPPFKKFAK  128 (172)
Q Consensus        68 ~gn~Is~~a~I~G~-~nI~Igg~v~I~~~avIrGdl-~~V~IG~~c~Ig~n-----------------avI~p~~~~~~~  128 (172)
                      .+..|...+.|.+. ..+.||+++.|+++++|..+. .++.||++|.|+++                 ++|.+.      
T Consensus        35 ~~~~I~~~~~i~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~i~~~------  108 (173)
T 1xhd_A           35 EESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHSCHIKKDALIGMGSIILDG------  108 (173)
T ss_dssp             TTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEESCEECTTCEECTTCEECTT------
T ss_pred             CCcEEcCCcEEecCCCeEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCCEEeCCEECCCCEEcCCCEEcCC------
Confidence            33444455555442 236666666666666665311 12555555544444                 444333      


Q ss_pred             ceEEeeCCCeEECCCcEEEecCCCeEECCCcee
Q psy2215         129 GFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIA  161 (172)
Q Consensus       129 g~~~~pGd~V~IG~navI~i~~pga~IGs~v~i  161 (172)
                         +.+|++++||++++|.   ++..|++++++
T Consensus       109 ---~~Ig~~~~Ig~~s~V~---~~~~i~~~~vv  135 (173)
T 1xhd_A          109 ---AEIGEGAFIGAGSLVS---QGKKIPPNTLA  135 (173)
T ss_dssp             ---CEECTTCEECTTCEEC---TTCEECTTEEE
T ss_pred             ---CEECCCCEECCCCEEC---CCcEeCCCCEE
Confidence               3458889999998888   77888888874

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0

Probab=98.94  E-value=4.1e-09  Score=87.40  Aligned_cols=74  Identities=12%  Similarity=0.101  Sum_probs=38.0

Q ss_pred             CCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCcc--CCCce--EEeeCCCeEECCCc
Q psy2215          69 GNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKK--FAKGF--LVYPGSTVYLVFTA  144 (172)
Q Consensus        69 gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~--~~~g~--~~~pGd~V~IG~na  144 (172)
                      +..|.+.+.|.+  ++.||+++.|+++++|.|+   ++||++|.|+++++|+.....  |....  .+.+|++|.||+++
T Consensus        22 ~v~I~~~~~I~~--~v~IG~~~~I~~~~~I~g~---~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v~IG~~~~Ig~~~   96 (266)
T 3r0s_A           22 DVVIEAYAYVSK--DAKIGNNVVIKQGARILSD---TTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNATIREFA   96 (266)
T ss_dssp             TCEECTTCEECT--TCEECTTCEECTTCEECSS---CEECTTCEECTTCEEEECCSCSCCC----CEEEECTTCEECTTC
T ss_pred             CCEECCCCEECC--CCEECCCCEEcCCeEEeCC---cEECCCcEEccCceeccCCccccccCCcCceEEECCCCEECCce
Confidence            333444444432  5666666666666666665   666666666666666532211  11100  13445555555555


Q ss_pred             EEE
Q psy2215         145 SVR  147 (172)
Q Consensus       145 vI~  147 (172)
                      +|.
T Consensus        97 ~I~   99 (266)
T 3r0s_A           97 TIN   99 (266)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            554

>4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A

Probab=98.94  E-value=1.2e-09  Score=88.42  Aligned_cols=81  Identities=19%  Similarity=0.172  Sum_probs=54.1

Q ss_pred             cceEECCCeEEC-------CCcEEcCCC---cceEECCCCeeCCCCEEc---cCCccCC---------------------
Q psy2215          82 QNIVLTGKVIIQ-------CDAVLRGDL---ANIRTGRYCIISKGVVIR---PPFKKFA---------------------  127 (172)
Q Consensus        82 ~nI~Igg~v~I~-------~~avIrGdl---~~V~IG~~c~Ig~navI~---p~~~~~~---------------------  127 (172)
                      .++.||.+++|+       ++++|....   ..+.||++|.|+++++|.   .....-.                     
T Consensus        34 ~~v~IG~~t~i~~~~~~~~~~~vI~~~~~Ig~~v~IG~~~~Ig~~v~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (220)
T 4hur_A           34 ENILVGEYSYYDSKRGESFEDQVLYHYEVIGDKLIIGRFCSIGPGTTFIMNGANHRMDGSTYPFHLFRMGWEKYMPSLKD  113 (220)
T ss_dssp             TTEEECTTCEEECSSSCCGGGGEESCCTTTCCCEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTTGGGGCCCGGG
T ss_pred             CCEEECCCeEECCcCCcccCCeEEeCCCEECCCeEECCCCEECCCCEEEECCCCcccCCcceeeeeeccccccccccccc
Confidence            466666666651       144454322   159999999999999973   1111000                     


Q ss_pred             --CceEEeeCCCeEECCCcEEEecCCCeEECCCceeCCeE
Q psy2215         128 --KGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCPL  165 (172)
Q Consensus       128 --~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~iga~i  165 (172)
                        ..-.+.+||+|+||++|+|.   ++++||+++.+|+..
T Consensus       114 ~~~~g~v~IG~~v~IG~~a~I~---~gv~IG~gavIgags  150 (220)
T 4hur_A          114 LPLKGDIEIGNDVWIGRDVTIM---PGVKIGDGAIIAAEA  150 (220)
T ss_dssp             SCCCCCEEECSSCEECTTCEEC---TTCEECTTCEECTTC
T ss_pred             ccccCCeEECCCcEECCCCEEe---CCCEECCCCEEcCCC
Confidence              00124579999999999999   999999999976654

>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3

Probab=98.94  E-value=2.7e-09  Score=85.81  Aligned_cols=60  Identities=20%  Similarity=0.195  Sum_probs=44.9

Q ss_pred             ceEECCCCeeCCCCEEccCC---ccCC-------------------Cc----eEEeeCCCeEECCCcEEEecCCCeEECC
Q psy2215         104 NIRTGRYCIISKGVVIRPPF---KKFA-------------------KG----FLVYPGSTVYLVFTASVRLKSPFAQIYS  157 (172)
Q Consensus       104 ~V~IG~~c~Ig~navI~p~~---~~~~-------------------~g----~~~~pGd~V~IG~navI~i~~pga~IGs  157 (172)
                      ++.||++|.|+++|+|....   +...                   .+    -.+.+||+|+||++|+|.   ++++||+
T Consensus        58 ~v~IG~~~~I~~~v~i~~~~~~~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~IG~~v~IG~~a~I~---~gv~IG~  134 (212)
T 3eev_A           58 KLVIGSFCSIGSGAVFMMAGNQGHRSDWISTFPFFYQDNDNFADARDGFTRSGDTIIGHDVWIGTEAMIM---PGVKIGH  134 (212)
T ss_dssp             CEEECSSCEECTTCEEECSTTTTCCTTSSCCSCGGGSCCGGGTTCCCCCCCCCCEEECSSCEECTTCEEC---TTCEECT
T ss_pred             CcEECCCCEECCCCEEEeCCCCcccccceeeccceeecccccccccCCcccCCCeEECCCCEECCCCEEc---CCCEECC
Confidence            69999999999999984321   1000                   01    125669999999999999   9999999


Q ss_pred             CceeCCeEE
Q psy2215         158 YIIAPCPLH  166 (172)
Q Consensus       158 ~v~iga~i~  166 (172)
                      ++++|+...
T Consensus       135 ~~iIgagsv  143 (212)
T 3eev_A          135 GAIIASRSV  143 (212)
T ss_dssp             TCEECTTCE
T ss_pred             CCEECCCCE
Confidence            999776543

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=98.94  E-value=5e-09  Score=83.96  Aligned_cols=76  Identities=14%  Similarity=0.171  Sum_probs=60.1

Q ss_pred             eeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecC
Q psy2215          71 KVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKS  150 (172)
Q Consensus        71 ~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~  150 (172)
                      .+++.+.+.+  ++.|+++++|+++++|..+   ++||++|.|+++++|..+         ..+||+|+|+++++|.   
T Consensus       101 ~i~~~a~i~~--~v~IG~g~~I~~~~~i~~~---~~IG~~~~I~~~~~I~~~---------~~Ig~~~~i~~~~~i~---  163 (220)
T 4ea9_A          101 AIHPSAVVSP--SVRLGEGVAVMAGVAINAD---SWIGDLAIINTGAVVDHD---------CRLGAACHLGPASALA---  163 (220)
T ss_dssp             EECTTCEECT--TCEECSSCEECTTCEECTT---CEECTTCEECTTCEECTT---------CEECTTCEECTTCEEC---
T ss_pred             cCCCCCEECC--CCEECCCCEEcCCCEECCC---CEECCCCEECCCCEECCC---------CEECCCCEECCCCEEc---
Confidence            3556666654  6788999999999999876   899999999999999876         4468888888888888   


Q ss_pred             CCeEECCCceeCC
Q psy2215         151 PFAQIYSYIIAPC  163 (172)
Q Consensus       151 pga~IGs~v~iga  163 (172)
                      .+++||++|.+|+
T Consensus       164 ~~v~Ig~~~~Ig~  176 (220)
T 4ea9_A          164 GGVSVGERAFLGV  176 (220)
T ss_dssp             SSCEECTTCEECT
T ss_pred             CCCEECCCCEECC
Confidence            4577777777544

>3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens}

Probab=98.93  E-value=7.3e-09  Score=81.78  Aligned_cols=90  Identities=13%  Similarity=0.113  Sum_probs=53.4

Q ss_pred             cCCeeecCCeEecc-cceEECCCeEECCCcEEcCCC-------------cceEECCCCeeCCCCEEccCC-----ccCCC
Q psy2215          68 SGNKVSRKSLVAGA-QNIVLTGKVIIQCDAVLRGDL-------------ANIRTGRYCIISKGVVIRPPF-----KKFAK  128 (172)
Q Consensus        68 ~gn~Is~~a~I~G~-~nI~Igg~v~I~~~avIrGdl-------------~~V~IG~~c~Ig~navI~p~~-----~~~~~  128 (172)
                      .+..|...+.|.+. .++.||+++.|+++++|....             .++.||+++.|+.+++++...     ..-.+
T Consensus        35 ~~~~I~~~~~I~~~~g~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~  114 (194)
T 3tv0_A           35 PRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYPDNITPDTEDPEPKPMIIGTNNVFEVGCYSQAMKMGDNNVIESK  114 (194)
T ss_dssp             TTCEECTTCEEEESSSCEEECTTCEECTTCEEEECCCSCC---------CCEEECSSCEECTTCEECCSEECSSCEECTT
T ss_pred             CCCEECCCCEEccCCCCeEECCCccccCCcccccccccccccccccCcCCceEECCcceEecceeEeeeeecccceecce
Confidence            34445566666542 468899999999999885321             145566655555444333210     00000


Q ss_pred             ce---EEeeCCCeEECCCcEEEecCCCeEECCCce
Q psy2215         129 GF---LVYPGSTVYLVFTASVRLKSPFAQIYSYII  160 (172)
Q Consensus       129 g~---~~~pGd~V~IG~navI~i~~pga~IGs~v~  160 (172)
                      ..   -+.+|++|.||++|+|.   ++++|+++++
T Consensus       115 ~~I~~gv~IG~~~~IgagsvV~---~~~~Ip~~sv  146 (194)
T 3tv0_A          115 AYVGRNVILTSGCIIGACCNLN---TFEVIPENTV  146 (194)
T ss_dssp             CEECTTEEECSSCEECTTCEEC---CCEEECTTEE
T ss_pred             eeECCeEEECCCCEECCCCEEC---CCcEECCCCE
Confidence            00   04458888888888887   7888888877

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp}

Probab=98.92  E-value=2.6e-09  Score=97.43  Aligned_cols=107  Identities=19%  Similarity=0.153  Sum_probs=71.0

Q ss_pred             ceeccc--CCchhhhhhccc--------cccCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCC
Q psy2215          48 GWWFES--KSSHKILVYSGA--------VASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGV  117 (172)
Q Consensus        48 g~W~D~--~~p~~Ll~~~~~--------~~~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~na  117 (172)
                      |.|+|.  ..+.++.++...        ...+..+.+.+.+.|  ++.||.++.|+++|.| +   ++.||++|.|+++|
T Consensus       248 g~~~Dll~~~~~d~~~i~~~~~~~~~~~I~~~a~I~p~a~i~g--~v~IG~~~~I~~~a~I-~---~v~IG~~~~I~~~~  321 (496)
T 3c8v_A          248 GVLMEFVEVRQEDFEEVFASGHMASGAGSASGASVSGYAVIKG--DTVIGENVLVSQRAYL-D---NAWMGKGSNAQENC  321 (496)
T ss_dssp             SHHHHHHHTTTHHHHHHHHC--------CCTTCEECTTSEEES--SCEECTTCEECTTCEE-E---EEEECTTCEECTTC
T ss_pred             ceeeehhccchHHHHHHhhccccccCcccCCCcEECCCcEEeC--CeEECCCCEECCCcEE-e---ceEecCCCEECCCc
Confidence            556665  455554443221        223556677777775  6899999999999999 3   48888888888887


Q ss_pred             EEccC-----CccCCCce---EEeeCCCeEECCCcEEEecCCC----eEECCCceeCCe
Q psy2215         118 VIRPP-----FKKFAKGF---LVYPGSTVYLVFTASVRLKSPF----AQIYSYIIAPCP  164 (172)
Q Consensus       118 vI~p~-----~~~~~~g~---~~~pGd~V~IG~navI~i~~pg----a~IGs~v~iga~  164 (172)
                      +|++.     ... ..+.   .+.+||+|+||++|+|.   ++    ++||+++.+|+.
T Consensus       322 ~I~~~vIG~~~~I-g~~a~I~gv~IGd~v~IG~~a~I~---~~~~~~v~IG~~a~IGag  376 (496)
T 3c8v_A          322 YIINSRLERNCVT-AHGGKIINAHLGDMIFTGFNSFLQ---GSESSPLKIGDGCVVMPH  376 (496)
T ss_dssp             EEEEEEEEESCEE-CTTCEEESEEEEETCEECTTCEEE---CCSSSCEEECTTCEECTT
T ss_pred             eEeceEeCCCCEE-CCCcEEcCceECCCcEECCCCEEe---CCCCcceEECCCCEECCC
Confidence            77521     111 1111   13458888888888888   77    788888886543

>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A*

Probab=98.91  E-value=6.2e-09  Score=84.98  Aligned_cols=81  Identities=19%  Similarity=0.232  Sum_probs=60.9

Q ss_pred             cceEECCCeEECC--------CcEE-----cCCCcceEECCCCeeCCCCEEc-cCC--ccC-------------------
Q psy2215          82 QNIVLTGKVIIQC--------DAVL-----RGDLANIRTGRYCIISKGVVIR-PPF--KKF-------------------  126 (172)
Q Consensus        82 ~nI~Igg~v~I~~--------~avI-----rGdl~~V~IG~~c~Ig~navI~-p~~--~~~-------------------  126 (172)
                      .+|+||+++.|++        ++++     +++..+++||++|.|+++|+|. ...  +.+                   
T Consensus        21 ~~I~IG~~~~I~~~~~~~~~~~~v~~~~~~~~~~~~i~IG~~~~Ig~~v~i~~~g~~~h~~~~~s~~p~~~~~~~~~~~~  100 (212)
T 1xat_A           21 PNIRVGRYSYYSGYYHGHSFDDCARYLMPDRDDVDKLVIGSFCSIGSGAAFIMAGNQGHRAEWASTFPFHFMHEEPAFAG  100 (212)
T ss_dssp             TTEEECTTCEECCTTTCCCGGGGEETCCSSCSSSCCEEECSSCEECTTCEEECSTTTTCCTTSSCCSCGGGCCSCGGGGG
T ss_pred             CCEEEcCCeEECCcccCccccceeEeeccccCcccCEEEcCCCEECCCCEEEeCCCCccccccccccceeeecccccccc
Confidence            5899999999986        3555     3456789999999999999983 211  110                   


Q ss_pred             -CCce----EEeeCCCeEECCCcEEEecCCCeEECCCceeCCeE
Q psy2215         127 -AKGF----LVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCPL  165 (172)
Q Consensus       127 -~~g~----~~~pGd~V~IG~navI~i~~pga~IGs~v~iga~i  165 (172)
                       ..+.    .+.+||+|+||++|+|.   ++++||+++.+|+..
T Consensus       101 i~~~~~~~~~v~IG~~v~IG~~a~I~---~gv~Ig~~~~Igags  141 (212)
T 1xat_A          101 AVNGYQPAGDTLIGHEVWIGTEAMFM---PGVRVGHGAIIGSRA  141 (212)
T ss_dssp             CCCCCCCCCCEEECTTCEECTTCEEC---TTCEECTTCEECTTC
T ss_pred             cccCceecCCeEECCCCEECCCCEEe---CCCEECCCCEECCCC
Confidence             0111    24569999999999999   999999999977654

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=98.91  E-value=4e-09  Score=91.48  Aligned_cols=106  Identities=11%  Similarity=0.108  Sum_probs=59.6

Q ss_pred             ecccCCchhhhhhccccc---------cCCee-ec-CCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCE
Q psy2215          50 WFESKSSHKILVYSGAVA---------SGNKV-SR-KSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVV  118 (172)
Q Consensus        50 W~D~~~p~~Ll~~~~~~~---------~gn~I-s~-~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~nav  118 (172)
                      |++.++|+||..+.....         .+..+ .+ .+.+.  .++.||+++.|+++++|.++   +.||++|.|+++|+
T Consensus       223 ~~~I~tpeDl~~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~--~~~~ig~~~~I~~~~~i~~~---~~Ig~~~~I~~~~~  297 (456)
T 2v0h_A          223 VEGANNRLQLAALERYFQNKQASKLLLEGVMIYDPARFDLR--GTLEHGKDVEIDVNVIIEGN---VKLGDRVKIGTGCV  297 (456)
T ss_dssp             GCCCSSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGEEEE--EEEEECSSCEECSSEEEEEE---EEECTTCEECTTCE
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHHHHHHcCCEEECCCccEEc--CceEECCCCEEcCCcEEcCC---cEECCCCEECCCCE
Confidence            578999999877654322         22222 11 12232  25677777777777777765   77777777777766


Q ss_pred             Ecc-----CCccCCCce--EEeeCCCeEECCCcEEEecCCCeEECCCceeCC
Q psy2215         119 IRP-----PFKKFAKGF--LVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPC  163 (172)
Q Consensus       119 I~p-----~~~~~~~g~--~~~pGd~V~IG~navI~i~~pga~IGs~v~iga  163 (172)
                      |+.     ....-+...  ...+|++|.||+++.|.   +++.||+++.+|.
T Consensus       298 i~~~~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~---~~~~ig~~~~ig~  346 (456)
T 2v0h_A          298 LKNVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLR---PGAELAAETHVGN  346 (456)
T ss_dssp             EEEEEECTTCEECSSCEEEEEEECTTCEECSSEEEC---TTCEECTTCEEEE
T ss_pred             EEeEEEeCCCEEcCCeEEccCcCCCCcEECCccEEC---CCCEECCCCEECC
Confidence            641     110000000  02346666666666666   5666666665443

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis}

Probab=98.90  E-value=9.2e-09  Score=86.00  Aligned_cols=73  Identities=12%  Similarity=0.147  Sum_probs=41.4

Q ss_pred             CeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccC--CCc-eEEeeCCCeEECCCcEE
Q psy2215          70 NKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF--AKG-FLVYPGSTVYLVFTASV  146 (172)
Q Consensus        70 n~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~--~~g-~~~~pGd~V~IG~navI  146 (172)
                      ..|.+.+.|.+  ++.||+++.|+++++|.++   ++||++|.|+++|+|+.....+  .+. -.+.+|+++.|+++|+|
T Consensus        41 v~Ig~~~~I~~--~v~IG~~~~I~~~~~I~~~---~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I  115 (283)
T 4eqy_A           41 VEVGPYAIVGS--NVTIGARTTIGSHSVIEGH---TTIGEDNRIGHYASVGGRPQDMKYKDEPTRLVIGDRNTIREFTTI  115 (283)
T ss_dssp             CEECTTCEECT--TEEECTTCEECTTCEECSE---EEECSSCEECTTEEEEECCCCTTCCCCCCEEEECSSCEECTTEEE
T ss_pred             CEECCCCEECC--CCEECCCCEECCCCEECCC---cEECCCcEEcCCcEECCCCccccccCCCceEEECCCcccCcceeE
Confidence            33334444433  5666777777777777665   7777777777777775433211  111 11344666666666666


Q ss_pred             E
Q psy2215         147 R  147 (172)
Q Consensus       147 ~  147 (172)
                      .
T Consensus       116 ~  116 (283)
T 4eqy_A          116 H  116 (283)
T ss_dssp             E
T ss_pred             c
Confidence            5

>3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A

Probab=98.89  E-value=6.8e-09  Score=87.44  Aligned_cols=56  Identities=11%  Similarity=0.024  Sum_probs=35.8

Q ss_pred             eEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECCCceeCCe
Q psy2215         105 IRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCP  164 (172)
Q Consensus       105 V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~iga~  164 (172)
                      +.||++|.|++++.|....+... .-.+.+||+|+||++|+|.   ++++||+++.+|+.
T Consensus       152 ~~IG~~v~I~~~~~i~g~~~~~~-~~~v~IGd~v~IG~~a~I~---~gv~IG~~avIgag  207 (276)
T 3gos_A          152 AQIGKNVHLSGGVGIGGVLEPLQ-ANPTIIEDNCFVGARSEVV---EGVIVEEGSVISMG  207 (276)
T ss_dssp             CEECTTCEECTTCEECCCCSSTT-SCCCEECTTCEECTTCEEC---TTCEECTTCEECTT
T ss_pred             CEECCCCEECCCCEECCccccCC-CCCeEECCCCEECCCCEEC---CCCEECCCCEECCC
Confidence            45555555555555543211110 0125679999999999998   88999999886554

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}

Probab=98.89  E-value=8.7e-09  Score=88.62  Aligned_cols=47  Identities=19%  Similarity=0.368  Sum_probs=26.9

Q ss_pred             eeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccC
Q psy2215          71 KVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPP  122 (172)
Q Consensus        71 ~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~  122 (172)
                      .|++.+.|..  +..|++++.|+++++|.++   +.||++|.|+++|+|+.+
T Consensus        99 ~i~~~a~i~~--~a~ig~~~~I~~~~~I~~~---v~IG~~~~I~~~~~Ig~~  145 (341)
T 3eh0_A           99 NIAPSAVIDA--TAKLGNNVSIGANAVIESG---VELGDNVIIGAGCFVGKN  145 (341)
T ss_dssp             SBCTTCEECT--TCEECTTCEECTTCEECTT---CEECTTCEECTTCEECTT
T ss_pred             ccCCCcEECC--CcEECCCCEECCCcEECCC---cEECCCcEECCCcEECCC
Confidence            3556666644  4666666666666666654   555555555555554433

>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482}

Probab=98.89  E-value=4.7e-09  Score=90.77  Aligned_cols=77  Identities=12%  Similarity=0.023  Sum_probs=48.9

Q ss_pred             eEECCCeEE--CCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCC-ce-------EEeeCCCeEECCCcEEEecCCCe
Q psy2215          84 IVLTGKVII--QCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAK-GF-------LVYPGSTVYLVFTASVRLKSPFA  153 (172)
Q Consensus        84 I~Igg~v~I--~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~-g~-------~~~pGd~V~IG~navI~i~~pga  153 (172)
                      ..||++++|  +.+++|..+   +.||++|.|+++++|+.....+.. |.       ...+||+|+||+||+|.   +++
T Consensus       197 a~IG~~v~I~hg~gvvIG~~---~~IG~~v~I~~gvtIg~~~~~~~~~g~~i~~~~~~~~IGd~V~IGaga~Il---~gv  270 (310)
T 3f1x_A          197 AQIGHHFTIDHGTGVVIGAT---SIIGNNVKLYQGVTLGAKSFPLDNNGNPIKGIPRHPILEDDVIVYSNATIL---GRV  270 (310)
T ss_dssp             CEECSSCEEESCTTCEECTT---CEECSSCEEETTCEEECC--------------CCSCEECTTCEECTTCEEE---SSC
T ss_pred             CEECCCcEECCCCCeEECCc---eEEcCCCEECCCCEECCCccccccccccccCCCCCCEECCCcEEcCCCEEC---CCc
Confidence            344444444  344444443   677777777777777765421110 00       02569999999999999   999


Q ss_pred             EECCCceeCCeEE
Q psy2215         154 QIYSYIIAPCPLH  166 (172)
Q Consensus       154 ~IGs~v~iga~i~  166 (172)
                      +||+++.+|+...
T Consensus       271 ~IGd~a~IGagsv  283 (310)
T 3f1x_A          271 TIGKGATVGGNIW  283 (310)
T ss_dssp             EECTTCEECSSCE
T ss_pred             EECCCCEECCCCE
Confidence            9999999877543

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*

Probab=98.89  E-value=1.2e-08  Score=84.03  Aligned_cols=40  Identities=15%  Similarity=0.034  Sum_probs=22.3

Q ss_pred             ceEECCCeEECCCcEE---------cCC-CcceEECCCCeeCCCCEEccC
Q psy2215          83 NIVLTGKVIIQCDAVL---------RGD-LANIRTGRYCIISKGVVIRPP  122 (172)
Q Consensus        83 nI~Igg~v~I~~~avI---------rGd-l~~V~IG~~c~Ig~navI~p~  122 (172)
                      ++.||+++.|+++++|         +|+ ...+.||++|.|+++|+|+..
T Consensus        48 ~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~v~IG~~~~Ig~~~~I~~~   97 (259)
T 3hsq_A           48 GSEIGKFNRFHQGAVIGVMPQDLGFNQQLLTKTVIGDHNIFREYSNIHKG   97 (259)
T ss_dssp             TEEECSSCEECTTCEEEECCSCTTCCTTSCCCEEECSSCEECTTCEEECC
T ss_pred             CcEECCCcEECCCCEECCCcccccccCccCCcEEECCCcEECCCCEECCC
Confidence            3555555555555555         333 334666666666666666544

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1

Probab=98.87  E-value=1.4e-08  Score=84.79  Aligned_cols=46  Identities=15%  Similarity=0.229  Sum_probs=26.5

Q ss_pred             eeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEcc
Q psy2215          71 KVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRP  121 (172)
Q Consensus        71 ~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p  121 (172)
                      .|.+.+.|.+  ++.||++++|+++|+|.|+   ++||++|.|+++|+|+.
T Consensus        21 ~Ig~~~~I~~--~v~IG~~~~I~~~~~I~g~---~~IG~~~~I~~~~~Ig~   66 (270)
T 1j2z_A           21 EIGEFCVIGD--GVKLDEGVKLHNNVTLQGH---TFVGKNTEIFPFAVLGT   66 (270)
T ss_dssp             EECTTCEECT--TCEECTTCEECTTCEECSE---EEECTTCEECTTCEESC
T ss_pred             EECCCCEECC--CCEECCCCEEcCCcEEeCC---eEEcCCCEEEeeeEECc
Confidence            3334444433  5666666666666666654   66666666666666653

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A

Probab=98.87  E-value=1.3e-08  Score=80.61  Aligned_cols=33  Identities=18%  Similarity=0.322  Sum_probs=13.2

Q ss_pred             eEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEE
Q psy2215          84 IVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVI  119 (172)
Q Consensus        84 I~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI  119 (172)
                      +.||++++|+++++|..|   +.||++|.|++++.|
T Consensus       108 ~~IG~~~~I~~~~~i~~~---~~Ig~~~~I~~~~~i  140 (194)
T 3bfp_A          108 AKIEKGVILNTSSVIEHE---CVIGEFSHVSVGAKC  140 (194)
T ss_dssp             CEECTTCEECTTCEECTT---CEECTTCEECTTCEE
T ss_pred             CEECCCCEECCCCEEcCC---CEECCCCEECCCCEE
Confidence            344444444444444333   344444444333333

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A

Probab=98.87  E-value=1.9e-08  Score=82.59  Aligned_cols=62  Identities=15%  Similarity=0.181  Sum_probs=33.9

Q ss_pred             ceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCC-Cc--eEEeeCCCeEECCCcEEE
Q psy2215          83 NIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFA-KG--FLVYPGSTVYLVFTASVR  147 (172)
Q Consensus        83 nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~-~g--~~~~pGd~V~IG~navI~  147 (172)
                      ++.||+++.|+++++|.++   ++||++|.|+++|+|+.....++ .+  -.+.+|+++.|+++|.|.
T Consensus        35 ~v~IG~~~~I~~~~~I~~~---~~IG~~~~I~~~~~I~~~~~~~~~~g~~~~~~IG~~~~Ig~~~~I~   99 (262)
T 2qia_A           35 HVEIGEGTVLKSHVVVNGH---TKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIH   99 (262)
T ss_dssp             TEEECTTCEECSSCEECSE---EEECSSCEECTTCEEEECCSCTTCCSCCCEEEECSSCEECTTCEEE
T ss_pred             CCEECCCcEECCCCEECCC---cEECCCCEEecceEECcCCccccccCCccceEECCCceeCCCCEEc
Confidence            5666666666666666655   67777777777777754322110 00  113345555555555554

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*

Probab=98.86  E-value=2.3e-08  Score=82.29  Aligned_cols=81  Identities=11%  Similarity=0.058  Sum_probs=43.5

Q ss_pred             cceEECCCeEECCCcEEcCCCc---ceEECCCCeeCCCCEEccCCccC-----CCceE----EeeCCCeEECCCcEEEec
Q psy2215          82 QNIVLTGKVIIQCDAVLRGDLA---NIRTGRYCIISKGVVIRPPFKKF-----AKGFL----VYPGSTVYLVFTASVRLK  149 (172)
Q Consensus        82 ~nI~Igg~v~I~~~avIrGdl~---~V~IG~~c~Ig~navI~p~~~~~-----~~g~~----~~pGd~V~IG~navI~i~  149 (172)
                      .++.||+++.|++++.|.....   .+.||++|.|++++.|..+...-     ..+..    +.+||+|+||.+|+|.  
T Consensus        78 ~~v~IG~~~~Ig~~~~I~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~--  155 (259)
T 3hsq_A           78 TKTVIGDHNIFREYSNIHKGTKEDSPTVIGNKNYFMGNSHVGHDCILGNNNILTHGAVLAGHVTLGNFAFISGLVAVH--  155 (259)
T ss_dssp             CCEEECSSCEECTTCEEECCSBTTBCEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECSSEEEC--
T ss_pred             CcEEECCCcEECCCCEECCCccCCCcEEECCCcEEcCCcEECCCcEECCccEEcCCceECCccEECCCcEEeCCCEEC--
Confidence            3577777777777777763221   45555555554444443322110     00000    2346666666666666  


Q ss_pred             CCCeEECCCceeCCeE
Q psy2215         150 SPFAQIYSYIIAPCPL  165 (172)
Q Consensus       150 ~pga~IGs~v~iga~i  165 (172)
                       ++++||+++.+++..
T Consensus       156 -~~v~Ig~~~~Vg~~s  170 (259)
T 3hsq_A          156 -QFCFVGDYSMVAGLA  170 (259)
T ss_dssp             -TTCEECTTCEECSSE
T ss_pred             -CCCEECCCCEECCCC
Confidence             777777777765543

>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus}

Probab=98.86  E-value=5.3e-09  Score=89.65  Aligned_cols=79  Identities=10%  Similarity=-0.029  Sum_probs=48.2

Q ss_pred             ceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCC----c-eEEeeCCCeEECCCcEEEecCCCeEECC
Q psy2215          83 NIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAK----G-FLVYPGSTVYLVFTASVRLKSPFAQIYS  157 (172)
Q Consensus        83 nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~----g-~~~~pGd~V~IG~navI~i~~pga~IGs  157 (172)
                      ++.|+.++.|++++.|... ..+.||++|.||++|.|++....-..    + -...+||+|+||++|+|.   ++++||+
T Consensus       164 gi~I~p~a~IG~~v~I~hg-~gvvIG~~~~IGd~v~I~~gvtIg~~~~~~~~r~~~IGd~v~IGaga~Il---~gv~IG~  239 (287)
T 3mc4_A          164 QTDIHPAARLGSGLFLDHA-TGLVVGETAVVEDNVSILHGVTLGGTGKSSGDRHPKIRQGVLIGAGAKIL---GNIQVGQ  239 (287)
T ss_dssp             CCEECTTCEECSSCEEESC-TTCEECTTCEECSSCEEETTCEEEC-----CCCSCEECTTCEECTTCEEE---SSCEECT
T ss_pred             CeEECCCCEECCCeEEccC-CCeEECCCeEECCCCEEcCCCEEcCCcccCCCcCCEECCCCEECCCCEEC---CCcEECC
Confidence            4566666666666666511 12444444444444444443321100    0 013569999999999999   8899999


Q ss_pred             CceeCCeE
Q psy2215         158 YIIAPCPL  165 (172)
Q Consensus       158 ~v~iga~i  165 (172)
                      ++.+|+..
T Consensus       240 ~a~IGags  247 (287)
T 3mc4_A          240 CSKIAAGS  247 (287)
T ss_dssp             TCEECTTC
T ss_pred             CCEECCCC
Confidence            99977654

>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*

Probab=98.86  E-value=2.3e-08  Score=82.40  Aligned_cols=36  Identities=14%  Similarity=0.165  Sum_probs=20.6

Q ss_pred             ceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEcc
Q psy2215          83 NIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRP  121 (172)
Q Consensus        83 nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p  121 (172)
                      ++.||+++.|+++++|.++   ++||++|.|+++++|+.
T Consensus        37 ~v~IG~~~~I~~~~~I~~~---~~IG~~~~I~~~a~Ig~   72 (265)
T 4e6u_A           37 QVTIGAGTKLHSHVVVGGF---TRIGQNNEIFQFASVGE   72 (265)
T ss_dssp             TEEECTTCEECSSCEECSS---EEECSSCEECTTCEEEE
T ss_pred             CCEECCCCEEcCCcEEeCC---cEECCCCEEcCCcEECC
Confidence            4555555555555555554   66666666666666643

>3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei}

Probab=98.85  E-value=1.2e-08  Score=88.04  Aligned_cols=30  Identities=7%  Similarity=-0.051  Sum_probs=24.8

Q ss_pred             EeeCCCeEECCCcEEEecCCCeEECCCceeCCe
Q psy2215         132 VYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCP  164 (172)
Q Consensus       132 ~~pGd~V~IG~navI~i~~pga~IGs~v~iga~  164 (172)
                      +.+||+|+||++|+|.   ++++||+++++|+.
T Consensus       219 v~IGd~v~IG~~a~I~---~gv~IG~g~vIgag  248 (316)
T 3tk8_A          219 VIIEDNCFIGARSEVV---EGVIVEENSVISMG  248 (316)
T ss_dssp             CEECTTCEECTTCEEC---TTCEECTTCEECTT
T ss_pred             cEECCCCEECCCCEEc---CCCEECCCCEEcCC
Confidence            5679999999999998   88888888885443

>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*

Probab=98.85  E-value=2.1e-08  Score=82.72  Aligned_cols=52  Identities=17%  Similarity=0.218  Sum_probs=30.3

Q ss_pred             cCCeeecCCeEecccceEECCCeEECCCcEE---------cCCCcceEECCCCeeCCCCEEcc
Q psy2215          68 SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVL---------RGDLANIRTGRYCIISKGVVIRP  121 (172)
Q Consensus        68 ~gn~Is~~a~I~G~~nI~Igg~v~I~~~avI---------rGdl~~V~IG~~c~Ig~navI~p  121 (172)
                      ++..|...+.|.+  ++.||+++.|+++++|         +|+...+.||++|.|+++|+|+.
T Consensus        42 ~~~~I~~~~~I~~--~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~~IG~~~~Ig~~~~I~~  102 (265)
T 4e6u_A           42 AGTKLHSHVVVGG--FTRIGQNNEIFQFASVGEVCQDLKYKGEETWLEIGNNNLIREHCSLHR  102 (265)
T ss_dssp             TTCEECSSCEECS--SEEECSSCEECTTCEEEECCCCTTCCSCCCEEEECSSCEECTTCEEEC
T ss_pred             CCCEEcCCcEEeC--CcEECCCCEEcCCcEECCccccccccCCCCeEEECCCeEECCceEECc
Confidence            3344444555544  5666666666666666         33334566666666666666654

>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A

Probab=98.84  E-value=1.1e-08  Score=88.53  Aligned_cols=32  Identities=16%  Similarity=-0.067  Sum_probs=27.3

Q ss_pred             eeCCCeEECCCcEEEecCCCeEECCCceeCCeEEe
Q psy2215         133 YPGSTVYLVFTASVRLKSPFAQIYSYIIAPCPLHV  167 (172)
Q Consensus       133 ~pGd~V~IG~navI~i~~pga~IGs~v~iga~i~~  167 (172)
                      .+||+|+||++|+|.   ++++||+++.+|+...-
T Consensus       225 ~IGd~v~IGaga~Il---ggv~IG~~a~IGagsvV  256 (313)
T 3q1x_A          225 TVGDYVTIGTGAKVL---GNIIVGSHVRIGANCWI  256 (313)
T ss_dssp             EECSSCEECTTCEEE---SSCEECSSEEECTTCEE
T ss_pred             EECCCCEECCCCEEC---CCcEECCCCEECCCCEE
Confidence            569999999999999   88999999997776543

>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A

Probab=98.83  E-value=1.1e-08  Score=81.23  Aligned_cols=75  Identities=13%  Similarity=0.116  Sum_probs=59.5

Q ss_pred             eecCCeEecccceEECCCeEECCCcEEcCC---------------CcceEECCCCeeCCCCEEccCCccCCCceEEeeCC
Q psy2215          72 VSRKSLVAGAQNIVLTGKVIIQCDAVLRGD---------------LANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGS  136 (172)
Q Consensus        72 Is~~a~I~G~~nI~Igg~v~I~~~avIrGd---------------l~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd  136 (172)
                      +...+.|....++.||+++.|+++|.|...               ..+++||++|.||++|+|.++         +.+|+
T Consensus        83 i~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~~~I~~g---------v~IG~  153 (185)
T 2p2o_A           83 MNFDGVILDVCEVRIGDHCFIGPGVHIYTATHPLDPHERNSGLEYGKPVVIGHNVWIGGRAVINPG---------VTIGD  153 (185)
T ss_dssp             ECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHHTCCBEECCEEECSSCEECTTCEECTT---------CEECT
T ss_pred             EcCCeEEEeccceEECCCcEEeCCCEEEcCCCcCChhhcccCccccCCeEEcCCeEECCCCEECCC---------CEECC
Confidence            344556654568999999999999999531               126999999999999999988         55799


Q ss_pred             CeEECCCcEEEecCCCeEECCCce
Q psy2215         137 TVYLVFTASVRLKSPFAQIYSYII  160 (172)
Q Consensus       137 ~V~IG~navI~i~~pga~IGs~v~  160 (172)
                      +++||++|+|.   ++  |.++++
T Consensus       154 ~~vIgagsvV~---~~--vp~~~v  172 (185)
T 2p2o_A          154 NAVIASGAVVT---KD--VPANAV  172 (185)
T ss_dssp             TCEECTTCEEC---SC--BCTTEE
T ss_pred             CCEECCCCEEC---CC--CCCCcE
Confidence            99999999998   33  556655

>3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis}

Probab=98.82  E-value=3e-08  Score=85.01  Aligned_cols=57  Identities=9%  Similarity=-0.073  Sum_probs=37.6

Q ss_pred             eEECCCCeeCCCCEEccCCccCC-----CceEEeeCCCeEECCCcEEEecCCCeEECCCceeCCe
Q psy2215         105 IRTGRYCIISKGVVIRPPFKKFA-----KGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCP  164 (172)
Q Consensus       105 V~IG~~c~Ig~navI~p~~~~~~-----~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~iga~  164 (172)
                      +.||++|.||++|.|++......     ..-++.+||+|+||++|+|.   ++++||+++.+|+.
T Consensus       171 ~~Ig~~~~IG~~v~I~~~~~i~~~~~~~~~~~v~IGd~v~IG~~a~I~---~gv~IG~~avIgag  232 (304)
T 3eg4_A          171 ATVGSCAQIGKNVHLSGGVGIGGVLEPMQAGPTIIEDNCFIGARSEVV---EGCIVREGSVLGMG  232 (304)
T ss_dssp             EEECTTCEECTTCEECTTCEECCCCSSTTCCCCEECTTCEECTTCEEC---TTCEECTTCEECTT
T ss_pred             cEECCCCccCCCcEECCCCEECCccccCccCCeEEcCCCEECCCCEEc---CCcEECCCcEECCC
Confidence            55666666666666655432110     01125669999999999988   88999998886554

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*

Probab=98.81  E-value=1.6e-08  Score=86.69  Aligned_cols=77  Identities=10%  Similarity=-0.016  Sum_probs=58.5

Q ss_pred             cCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215          68 SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR  147 (172)
Q Consensus        68 ~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~  147 (172)
                      .+..|.+.+.|.+  ++.||+++.|+++++|+++   +.||++|.|+++|.|+.          ..+|+++.||+++.|.
T Consensus       249 ~~~~I~~~~~i~~--~~~Ig~~~~I~~~~~i~~~---~~Ig~~~~ig~~~~i~~----------~~i~~~~~i~~~~~i~  313 (401)
T 2ggo_A          249 EDAEIKSGTYIEG--PVYIGKGSEIGPNSYLRPY---TILVEKNKIGASVEVKE----------SVIMEGSKIPHLSYVG  313 (401)
T ss_dssp             TTCEECTTCEEES--SEEECTTCEECSSCEECTT---EEECSSCEEEETCEEES----------EEECTTCEEEESCEEE
T ss_pred             CCCEECCCCEEeC--CeEECCCCEECCCCEEcCC---cEECCCCEECCCCEEec----------CEEcCCcEECCCceEc
Confidence            3445556667665  6899999999999999976   99999999999999943          4457788888888777


Q ss_pred             ecCCCeEECCCceeCC
Q psy2215         148 LKSPFAQIYSYIIAPC  163 (172)
Q Consensus       148 i~~pga~IGs~v~iga  163 (172)
                          ++.||+++.+|+
T Consensus       314 ----~~~Ig~~~~Ig~  325 (401)
T 2ggo_A          314 ----DSVIAEDVNFGA  325 (401)
T ss_dssp             ----SCEECTTCEECT
T ss_pred             ----ceEECCCcEECC
Confidence                555666555443

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A*

Probab=98.81  E-value=2.6e-08  Score=81.69  Aligned_cols=50  Identities=14%  Similarity=0.173  Sum_probs=32.3

Q ss_pred             eeecCCeEecccceEECCCeEECCCcEEcCC-----------CcceEECCCCeeCCCCEEccC
Q psy2215          71 KVSRKSLVAGAQNIVLTGKVIIQCDAVLRGD-----------LANIRTGRYCIISKGVVIRPP  122 (172)
Q Consensus        71 ~Is~~a~I~G~~nI~Igg~v~I~~~avIrGd-----------l~~V~IG~~c~Ig~navI~p~  122 (172)
                      .|...+.|.+  ++.||+++.|+++|+|.++           ..++.||++|.|+++++|+++
T Consensus        28 ~Ig~~~~I~~--~v~Ig~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~   88 (273)
T 3fs8_A           28 YIDYGCIIRD--NVHIKKGSFIGARSILGEYLVDFYNDRINKKHPLIIGENALIRTENVIYGD   88 (273)
T ss_dssp             EECTTCEECS--SEEECTTCEECTTCEEEECCTTHHHHTCCCCCCEEECTTCEECTTCEEESS
T ss_pred             EECCCCEECC--CCEECCCcEECCCcEeCCccccccccccccccceEECCCCEECCCCEEeCC
Confidence            3444444444  5777777777777777653           224777777777777777655

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis}

Probab=98.81  E-value=1.8e-08  Score=84.28  Aligned_cols=62  Identities=18%  Similarity=0.182  Sum_probs=53.8

Q ss_pred             eeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEE
Q psy2215          71 KVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASV  146 (172)
Q Consensus        71 ~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI  146 (172)
                      +|++.+.|..  +..|++++.|+++|+|.++   +.||++|.|+++++|+++         +.+|++|.|+++|+|
T Consensus        24 ~I~p~a~I~~--~a~ig~~v~Ig~~~~I~~~---v~IG~~~~I~~~~~I~~~---------~~IG~~~~I~~~a~I   85 (283)
T 4eqy_A           24 RIHPTAIIEP--GAQLHETVEVGPYAIVGSN---VTIGARTTIGSHSVIEGH---------TTIGEDNRIGHYASV   85 (283)
T ss_dssp             CBCTTCEECT--TCEECTTCEECTTCEECTT---EEECTTCEECTTCEECSE---------EEECSSCEECTTEEE
T ss_pred             ccCCCCEECC--CCEECCCCEECCCCEECCC---CEECCCCEECCCCEECCC---------cEECCCcEEcCCcEE
Confidence            4677777765  6899999999999999987   999999999999999976         667889999988888

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A

Probab=98.80  E-value=3.2e-08  Score=81.15  Aligned_cols=66  Identities=14%  Similarity=0.113  Sum_probs=54.7

Q ss_pred             cCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215          68 SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR  147 (172)
Q Consensus        68 ~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~  147 (172)
                      .+..|++.+.|..  +..|++++.|+++|+|.++   +.||++|.|+++|+|.++         +.+|++|.|+++|+|.
T Consensus         4 ~~~~I~p~a~I~~--~a~Ig~~v~I~~~~~I~~~---v~IG~~~~I~~~~~I~~~---------~~IG~~~~I~~~~~I~   69 (262)
T 2qia_A            4 KSAFVHPTAIVEE--GASIGANAHIGPFCIVGPH---VEIGEGTVLKSHVVVNGH---------TKIGRDNEIYQFASIG   69 (262)
T ss_dssp             TTCEECTTCEECT--TCEECTTCEECTTCEECTT---EEECTTCEECSSCEECSE---------EEECSSCEECTTCEEE
T ss_pred             CCCeECCCCEECC--CCEECCCCEECCCCEECCC---CEECCCcEECCCCEECCC---------cEECCCCEEecceEEC
Confidence            3455667776654  6899999999999999876   999999999999999976         5678899999888883

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=98.80  E-value=1.9e-08  Score=87.90  Aligned_cols=110  Identities=10%  Similarity=0.144  Sum_probs=61.1

Q ss_pred             eeccceecccC--Cchhhhhhccccc---------cCCee-ec-CCeEecccceEECCCeEECCCcEEcCCCcceEECCC
Q psy2215          44 FLSRGWWFESK--SSHKILVYSGAVA---------SGNKV-SR-KSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRY  110 (172)
Q Consensus        44 ~~~~g~W~D~~--~p~~Ll~~~~~~~---------~gn~I-s~-~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~  110 (172)
                      +...|.|.|.+  +|+||..++....         .+..+ .+ .+.+.  .+..|++++.|+++++|.++   +.||++
T Consensus       224 ~~~~g~~~~i~i~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~i~~~~~i~~~~~i~~~---~~ig~~  298 (468)
T 1hm9_A          224 YTLKDFDESLGVNDRVALATAESVMRRRINHKHMVNGVSFVNPEATYID--IDVEIAPEVQIEANVILKGQ---TKIGAE  298 (468)
T ss_dssp             EECSSGGGGCCCCSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGCEEC--TTCEECTTCEECSSCEEESS---CEECTT
T ss_pred             EEcCChHHhhCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEECCCeeEEC--CCcEECCCCEECCCcEECCC---CEECCC
Confidence            45578998855  9999877664321         12111 11 12222  24566667777777776665   666666


Q ss_pred             CeeCCCCEEcc-----CCccCCCce--EEeeCCCeEECCCcEEEecCCCeEECCCceeC
Q psy2215         111 CIISKGVVIRP-----PFKKFAKGF--LVYPGSTVYLVFTASVRLKSPFAQIYSYIIAP  162 (172)
Q Consensus       111 c~Ig~navI~p-----~~~~~~~g~--~~~pGd~V~IG~navI~i~~pga~IGs~v~ig  162 (172)
                      |.|+++|+|+.     ..... ...  ...+|++|.||++|.|.   +++.||+++.+|
T Consensus       299 ~~I~~~~~i~~~~ig~~~~i~-~~~i~~~~Ig~~~~Ig~~~~i~---~~~~ig~~~~Ig  353 (468)
T 1hm9_A          299 TVLTNGTYVVDSTIGAGAVIT-NSMIEESSVADGVTVGPYAHIR---PNSSLGAQVHIG  353 (468)
T ss_dssp             CEECTTCEEESCEECTTCEEC-SCEEESCEECTTCEECSSCEEC---SSCEECTTCEEE
T ss_pred             CEECCCCEEeccEEeCCcEEE-EEEEeccccCCCcEECCceEEe---cCcEECCccEEC
Confidence            66666666542     11110 000  02347777777777777   556666555543

>3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A*

Probab=98.80  E-value=2.9e-08  Score=78.55  Aligned_cols=68  Identities=16%  Similarity=0.225  Sum_probs=56.0

Q ss_pred             eeecCCeEecccceEECCCeEECCCcEEcCC---------------CcceEECCCCeeCCCCEEccCCccCCCceEEeeC
Q psy2215          71 KVSRKSLVAGAQNIVLTGKVIIQCDAVLRGD---------------LANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPG  135 (172)
Q Consensus        71 ~Is~~a~I~G~~nI~Igg~v~I~~~avIrGd---------------l~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pG  135 (172)
                      .+...+.|.....|.||+++.|+++|+|..+               ..+++||++|.||.+|+|.+.         +.+|
T Consensus        84 ~i~~~~~i~~~~~i~IG~~~~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~g---------v~IG  154 (188)
T 3srt_A           84 FANYDCIFLDVCKIEIGDNVMLAPNVQIYTAYHPIDAQLRNSGIEYGSPVKIGDNVWIGGGVIITPG---------ITIG  154 (188)
T ss_dssp             EECTTEEEECSSCEEECSSCEECTTCEEECEECCSSHHHHHTTEEEECCEEECSSCEECTTCEECTT---------CEEC
T ss_pred             cccCceEEecCCceEECCeeEECCCcEEeeCCccCchhhccccceECCCcEECCCcEEcCCCEECCC---------cEEC
Confidence            3445566665568999999999999999521               126999999999999999998         5579


Q ss_pred             CCeEECCCcEEE
Q psy2215         136 STVYLVFTASVR  147 (172)
Q Consensus       136 d~V~IG~navI~  147 (172)
                      ++++||++|+|.
T Consensus       155 ~~~vIgagsvV~  166 (188)
T 3srt_A          155 DNVVIGAGSVVT  166 (188)
T ss_dssp             SSEEECTTCEEC
T ss_pred             CCCEECCCCEEC
Confidence            999999999998

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A*

Probab=98.80  E-value=1.8e-08  Score=87.36  Aligned_cols=16  Identities=13%  Similarity=0.067  Sum_probs=10.6

Q ss_pred             EeeCCCeEECCCcEEE
Q psy2215         132 VYPGSTVYLVFTASVR  147 (172)
Q Consensus       132 ~~pGd~V~IG~navI~  147 (172)
                      +.+||+|+||+||+|.
T Consensus       229 v~Ig~~v~IG~~~~I~  244 (374)
T 2iu8_A          229 VIIEDDVEIGANTTID  244 (374)
T ss_dssp             EEECTTCEECTTCEEE
T ss_pred             EEECCCCEECCCcEEc
Confidence            3447777777777776

>4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A

Probab=98.78  E-value=2.9e-08  Score=86.20  Aligned_cols=47  Identities=11%  Similarity=0.156  Sum_probs=24.8

Q ss_pred             CeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEcc
Q psy2215          70 NKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRP  121 (172)
Q Consensus        70 n~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p  121 (172)
                      ..+++.+.|..  +..|++++.|+++++|.++   +.||++|.|+++|+|++
T Consensus       103 ~~i~p~a~I~~--~a~ig~~~~I~~~~~I~~~---~~IG~~~~I~~~~~I~~  149 (357)
T 4e79_A          103 TGIESTARIHP--SAVISETAYIGHYVVIGEN---CVVGDNTVIQSHTKLDD  149 (357)
T ss_dssp             CEECTTCEECT--TCEECTTCEECTTCEECTT---CEECTTCEECTTCEECT
T ss_pred             CeeCCCCEECC--CCEECCCCEECCCCEECCC---CEECCCCEECCCCEECC
Confidence            34555555543  4556666666666666554   44444444444444443

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0

Probab=98.78  E-value=3.8e-08  Score=81.52  Aligned_cols=95  Identities=14%  Similarity=0.083  Sum_probs=58.5

Q ss_pred             ccCCeeecCCeEe---------cc--cceEECCCeEECCCcEEcCCC----cceEECCCCeeCCCCEEccCCcc-----C
Q psy2215          67 ASGNKVSRKSLVA---------GA--QNIVLTGKVIIQCDAVLRGDL----ANIRTGRYCIISKGVVIRPPFKK-----F  126 (172)
Q Consensus        67 ~~gn~Is~~a~I~---------G~--~nI~Igg~v~I~~~avIrGdl----~~V~IG~~c~Ig~navI~p~~~~-----~  126 (172)
                      -.+.+|...+.|.         |.  .++.||+++.|++++.|....    ..+.||++|.|++++.|..+...     +
T Consensus        56 G~~~~I~~~a~I~~~~~~~~~~g~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i  135 (266)
T 3r0s_A           56 GDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNATIREFATINSGTAKGDGFTRIGDNAFIMAYCHIAHDCLLGNNIIL  135 (266)
T ss_dssp             CTTCEECTTCEEEECCSCSCCC----CEEEECTTCEECTTCEEECCCTTTTSEEEECTTCEECTTCEECTTCEECSSCEE
T ss_pred             CCCcEEccCceeccCCccccccCCcCceEEECCCCEECCceEecCCcccCCccEEECCCceeCCcceEccccccCCCeEE
Confidence            3455566666663         21  267888888888888886321    23666666666666655433221     0


Q ss_pred             CCceE----EeeCCCeEECCCcEEEecCCCeEECCCceeCCe
Q psy2215         127 AKGFL----VYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCP  164 (172)
Q Consensus       127 ~~g~~----~~pGd~V~IG~navI~i~~pga~IGs~v~iga~  164 (172)
                      ..+..    +.+||+|+||.+|+|.   ++++||+++.+++.
T Consensus       136 ~~~~~i~~~v~Igd~~~Ig~~a~V~---~~v~Ig~~a~Vg~~  174 (266)
T 3r0s_A          136 ANNATLAGHVELGDFTVVGGLTPIH---QFVKVGEGCMIAGA  174 (266)
T ss_dssp             CTTCEECTTCEECTTCEECTTCEEC---TTCEECTTCEECSS
T ss_pred             CCCceecCCeEECCCcEEccCCEEC---CCcEECCCCEEccC
Confidence            00100    3458888888888888   88888888886653

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1

Probab=98.77  E-value=6.9e-08  Score=80.49  Aligned_cols=53  Identities=23%  Similarity=0.310  Sum_probs=35.2

Q ss_pred             cCCeeecCCeEecccceEECCCeEECCCcEE---------cCCCcceEECCCCeeCCCCEEccC
Q psy2215          68 SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVL---------RGDLANIRTGRYCIISKGVVIRPP  122 (172)
Q Consensus        68 ~gn~Is~~a~I~G~~nI~Igg~v~I~~~avI---------rGdl~~V~IG~~c~Ig~navI~p~  122 (172)
                      ++..|...+.|.|  ++.||+++.|+++|+|         +|+...+.||++|.|+++|+|+..
T Consensus        36 ~~~~I~~~~~I~g--~~~IG~~~~I~~~~~Ig~~~~~~~~~g~~~~~~IG~~~~I~~~~~I~~~   97 (270)
T 1j2z_A           36 EGVKLHNNVTLQG--HTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGEDNLIREFCMINPG   97 (270)
T ss_dssp             TTCEECTTCEECS--EEEECTTCEECTTCEESCCCSCSSCCSCCCEEEECSSCEECTTCEECCC
T ss_pred             CCCEEcCCcEEeC--CeEEcCCCEEEeeeEECcCCccccccCCccceEECCCCEECCCeEEcCC
Confidence            4445555666665  5777777777777777         344446777777777777777654

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}

Probab=98.77  E-value=5.6e-08  Score=84.98  Aligned_cols=46  Identities=20%  Similarity=0.229  Sum_probs=22.1

Q ss_pred             eeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEcc
Q psy2215          71 KVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRP  121 (172)
Q Consensus        71 ~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p  121 (172)
                      .+++.+.|..  +..|++++.|+++++|.++   ++||++|.|+++|+|++
T Consensus       121 ~i~p~a~i~~--~a~Ig~~~~I~~~~~I~~~---v~IG~~~~I~~~~~Ig~  166 (372)
T 3pmo_A          121 GIHPTAIVAA--DAEVDPSASVGAYAVIESG---ARIGAGVSIGAHCVIGA  166 (372)
T ss_dssp             EECTTCEECT--TCEECTTCEECTTCEECTT---CEECTTCEECTTCEECT
T ss_pred             ccCCCCEECC--CCEECCCCEECCCCEECCC---CEECCCCEECCCCEECC
Confidence            3455555543  3455555555555555543   44444444444444443

>1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6

Probab=98.77  E-value=1.9e-08  Score=86.20  Aligned_cols=77  Identities=9%  Similarity=-0.137  Sum_probs=44.6

Q ss_pred             eEECCCeEECCCcEEcCCCcc------eEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECC
Q psy2215          84 IVLTGKVIIQCDAVLRGDLAN------IRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYS  157 (172)
Q Consensus        84 I~Igg~v~I~~~avIrGdl~~------V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs  157 (172)
                      +.|+.++.|++++.|... ..      +.||++|.|+++++|+....... .-...+||+|+||++|+|.   ++++||+
T Consensus       158 ~~I~p~a~IG~gv~I~~g-~gvvIG~~~~IG~~v~I~~gvtLg~~~~~~~-~~~~~IGd~v~IGaga~Il---ggv~IG~  232 (289)
T 1t3d_A          158 VDIHPAAKIGRGIMLDHA-TGIVVGETAVIENDVSILQSVTLGGTGKSGG-DRHPKIREGVMIGAGAKIL---GNIEVGR  232 (289)
T ss_dssp             CEECTTCEECSSCEECSC-TTCEECTTCEECSSCEECTTCEEECCSSSCS-SCSCEECTTCEECTTCEEE---SSCEECT
T ss_pred             eEEcCCCEEcCCEEECCC-CceEECCCcEECCCCEEcCCcEECCCccccC-CCCeEECCCeEECCCCEEe---cCcEECC
Confidence            444555555555555411 12      44555555555555544321100 0013569999999999999   8899999


Q ss_pred             CceeCCeE
Q psy2215         158 YIIAPCPL  165 (172)
Q Consensus       158 ~v~iga~i  165 (172)
                      ++.+|+..
T Consensus       233 ~a~IGags  240 (289)
T 1t3d_A          233 GAKIGAGS  240 (289)
T ss_dssp             TCEECTTC
T ss_pred             CCEECCCC
Confidence            99977654

>1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A*

Probab=98.76  E-value=3.1e-08  Score=83.92  Aligned_cols=78  Identities=10%  Similarity=-0.052  Sum_probs=45.7

Q ss_pred             eEECCCeEECCCcEEcCCCcc------eEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECC
Q psy2215          84 IVLTGKVIIQCDAVLRGDLAN------IRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYS  157 (172)
Q Consensus        84 I~Igg~v~I~~~avIrGdl~~------V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs  157 (172)
                      +.|+.++.|++++.|... ..      +.||++|.|+++++|+...+...+ -...+||+|+||++|+|.   ++++||+
T Consensus       138 ~~I~p~a~IG~g~~I~~~-~~vvIG~~~~IG~~v~I~~gvtig~~~~~~~~-~~~~IGd~v~IGaga~Il---~gv~IG~  212 (267)
T 1ssq_A          138 VDIHPAAKIGHGIMFDHA-TGIVVGETSVIENDVSILQGVTLGGTGKESGD-RHPKVREGVMIGAGAKIL---GNIEVGK  212 (267)
T ss_dssp             CEECTTCEECSSCEESSC-TTCEECTTCEECTTCEECTTCEEECCSSSCSS-CSCEECTTCEECTTCEEE---SSCEECT
T ss_pred             eEeCCCCEECCCEEECCC-CceEECCeeEECCCCEEcCCcEECCCcccCCC-CCeEECCCeEEcCCCEEe---CCcEECC
Confidence            444444455554444411 12      555555555555555543211000 013569999999999999   8899999


Q ss_pred             CceeCCeEE
Q psy2215         158 YIIAPCPLH  166 (172)
Q Consensus       158 ~v~iga~i~  166 (172)
                      ++.+|+...
T Consensus       213 ~a~IGagsv  221 (267)
T 1ssq_A          213 YAKIGANSV  221 (267)
T ss_dssp             TCEECTTCE
T ss_pred             CCEECCCCE
Confidence            999776543

>2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni}

Probab=98.76  E-value=8e-09  Score=91.92  Aligned_cols=120  Identities=13%  Similarity=0.119  Sum_probs=70.4

Q ss_pred             CCceeeeccceecccCC--chh-------hhhhc------------c----ccc-cCCeeecCCeEecccceEECCCeEE
Q psy2215          39 SGAVDFLSRGWWFESKS--SHK-------ILVYS------------G----AVA-SGNKVSRKSLVAGAQNIVLTGKVII   92 (172)
Q Consensus        39 ~~~~~~~~~g~W~D~~~--p~~-------Ll~~~------------~----~~~-~gn~Is~~a~I~G~~nI~Igg~v~I   92 (172)
                      .|...++.+..|.|.|.  |.+       |+...            .    ... .+.+|.+.+.|.+  ++.||++++|
T Consensus       161 ~g~~g~l~~~~Wt~~G~~~~~~f~~~~~~l~~~G~~~~~~~~dk~p~~~~~v~p~~gv~I~p~a~I~~--~a~IG~gv~I  238 (387)
T 2rij_A          161 NGAFGLLSNVAWSDDKPIELEYLRANEMRLKMSNQYPKIDFVDKFPRFLAHIIPEDNTRILESSKVRM--GASLAAGTTI  238 (387)
T ss_dssp             TTHHHHSCCEEEETTEEECHHHHHHHHHHHHHTTCCCCCCEEESSCBGGGTCCCCTTCEESCGGGBBT--TCBCCTTCEE
T ss_pred             hHhhccCceeeeccCcccCHHHHHHHHHHHHhcCCccceeecccccchhccccCCCCEEEcCCCEECC--CeEEcCCCEE
Confidence            45667889999999888  443       22110            0    011 1445555555543  3455555555


Q ss_pred             CCC-cEEcCCC-----cce--EECCCCeeCCCCEEccCCcc---CCCc--eEEeeCCCeEECCCcEEEecCCCeEECCCc
Q psy2215          93 QCD-AVLRGDL-----ANI--RTGRYCIISKGVVIRPPFKK---FAKG--FLVYPGSTVYLVFTASVRLKSPFAQIYSYI  159 (172)
Q Consensus        93 ~~~-avIrGdl-----~~V--~IG~~c~Ig~navI~p~~~~---~~~g--~~~~pGd~V~IG~navI~i~~pga~IGs~v  159 (172)
                      +++ ++|..+.     .-|  .||.+|.||++|.|++....   ...+  -++.+||+|+||++|+ .    +++||++|
T Consensus       239 g~g~a~Ig~nv~vIG~~~I~~~Ig~~vvIGdnv~Ig~ga~I~g~l~g~~~~~VvIGdnv~IGagAv-~----GV~IGdga  313 (387)
T 2rij_A          239 MPGASYVNFNAGTTGACMVEGRISSSAIVGEGSDVGGGASILGVLSGTSGNAISVGKACLLGANSV-T----GIPLGDNC  313 (387)
T ss_dssp             CSSSCEECTTCEESSCCEECSEECTTCEECTTCEECTTCEECCBCSSTTCCBCEECTTCEECTTCE-E----CSCBCTTC
T ss_pred             eCCeeEECCCcEEECCEEEeeEECCCCEECCCCEECCCceEcceecCCCccCeEEeCCCEECCCCc-C----CcEECCCC
Confidence            553 4443221     211  56666777777777766531   1111  1256799999999999 8    88888888


Q ss_pred             eeCCeE
Q psy2215         160 IAPCPL  165 (172)
Q Consensus       160 ~iga~i  165 (172)
                      ++|+..
T Consensus       314 vIGAGs  319 (387)
T 2rij_A          314 IVDAGI  319 (387)
T ss_dssp             EECTTC
T ss_pred             EECCCC
Confidence            866643

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana}

Probab=98.76  E-value=3.6e-08  Score=83.42  Aligned_cols=76  Identities=21%  Similarity=0.315  Sum_probs=48.3

Q ss_pred             ceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE-----ecC-----CC
Q psy2215          83 NIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR-----LKS-----PF  152 (172)
Q Consensus        83 nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~-----i~~-----pg  152 (172)
                      ++.||+++.|+++++|.++   ++||++|.|+++++|+....    + .+.+|++|.||++|+|.     +..     ..
T Consensus        37 ~v~IG~~~~I~~~~~I~g~---~~IG~~~~I~~~a~I~~d~~----g-~~~IG~~~~Ig~~a~Ig~~~q~~~~~~~~~~~  108 (305)
T 3t57_A           37 SVKLGNGCKLYPSSHVFGN---TELGESCVLMTGAVVGDELP----G-YTFIGCNNIIGHHAVVGVKCQDLKYKHGDECF  108 (305)
T ss_dssp             TEEECTTCEECTTCEECSS---EEECTTCEECTTCEECCSSS----E-EEEECSSCEECTTCEEEECCCCTTCCTTCCEE
T ss_pred             CCEECCCCEECCCcEECCC---cEECCCcEEccCcEeccCCC----C-ceEECCceEECCccEeCccccccceecCCCce
Confidence            5666666666666666655   77777777777777775310    1 15568888888888884     000     01


Q ss_pred             eEECCCcee--CCeEE
Q psy2215         153 AQIYSYIIA--PCPLH  166 (172)
Q Consensus       153 a~IGs~v~i--ga~i~  166 (172)
                      ..||+++.+  ++.++
T Consensus       109 i~IG~~~~I~~~~~I~  124 (305)
T 3t57_A          109 LCIGNNNEIREFCSIH  124 (305)
T ss_dssp             EEECSSCEECTTCEEE
T ss_pred             EEECCCcccCceEEEe
Confidence            678888884  45554

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}

Probab=98.75  E-value=3.4e-08  Score=86.32  Aligned_cols=31  Identities=13%  Similarity=-0.069  Sum_probs=19.1

Q ss_pred             EeeCCCeEECCCcEEE-ecCCCeEECCCceeC
Q psy2215         132 VYPGSTVYLVFTASVR-LKSPFAQIYSYIIAP  162 (172)
Q Consensus       132 ~~pGd~V~IG~navI~-i~~pga~IGs~v~ig  162 (172)
                      +.+||+|.||++|+|. -.+.++.||+++.++
T Consensus       223 v~IGd~v~IGa~~~I~~g~~~~t~IG~~~~I~  254 (372)
T 3pmo_A          223 VTIGDDVEIGANTTIDRGALSDTLIGNGVKLD  254 (372)
T ss_dssp             EEECSSCEECTTCEEECCSSSCEEECTTCEEC
T ss_pred             eEECCCCEECCCcEEccCcccceEECCCCEEC
Confidence            4458888888888885 112345666655533

>3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A

Probab=98.74  E-value=1.6e-08  Score=88.84  Aligned_cols=90  Identities=9%  Similarity=0.066  Sum_probs=52.9

Q ss_pred             ccCCeeecCCeEecccceEECCCeEECCCcEEcCCC-------------cceEECCCCeeCCCCEEccCCccCCCceEEe
Q psy2215          67 ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDL-------------ANIRTGRYCIISKGVVIRPPFKKFAKGFLVY  133 (172)
Q Consensus        67 ~~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl-------------~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~  133 (172)
                      .++.+|.+.+.|.-  +..||++++|++++.|.-+.             ..+.||++|.|+++|+|+...+...+ -.+.
T Consensus       182 ~~gv~I~P~AvI~~--GA~IGeGv~Igp~a~Vn~na~IGdg~iI~~~a~igv~IGdnv~IgpGa~IgG~~~~~~~-~~V~  258 (347)
T 3r5d_A          182 PAGVRIADTARVRL--GAYIGEGTTVMHEGFVNFNAGTEGPGMIEGRVSAGVFVGKGSDLGGGCSTMGTLSGGGN-IVIS  258 (347)
T ss_dssp             CTTEEESSGGGBBT--TEEECTTEEECTTCEECTTEEESSSEEECSEECTTCEECTTEEECTTCEECC------C-CCCE
T ss_pred             cCCcEECCcCEECC--CCEECCCCEECCCCEECCCCEECCCcEEcCCceEeEEECCCCEECCCCEEccccCCCCc-cceE
Confidence            34555555554432  34455555555444433210             13788888888888888865332111 1256


Q ss_pred             eCCCeEECCCcEEEecCCCeEECCCceeCCe
Q psy2215         134 PGSTVYLVFTASVRLKSPFAQIYSYIIAPCP  164 (172)
Q Consensus       134 pGd~V~IG~navI~i~~pga~IGs~v~iga~  164 (172)
                      +||+|+||+||+|     +++||++|++|+.
T Consensus       259 IGdnv~IGAnAtI-----GVtIGd~~iIGAG  284 (347)
T 3r5d_A          259 VGEGCLIGANAGI-----GIPLGDRNIVEAG  284 (347)
T ss_dssp             ECTTCEECTTCEE-----CSCBCTTCEECTT
T ss_pred             ECCCCEECCCCEE-----eeEECCCCEECCC
Confidence            7999999999998     6777777775543

>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A*

Probab=98.73  E-value=8.7e-08  Score=75.69  Aligned_cols=71  Identities=11%  Similarity=0.150  Sum_probs=58.1

Q ss_pred             cCCeeecCCeEecccceEECCCeEECCCcEEcCC---------------CcceEECCCCeeCCCCEEccCCccCCCceEE
Q psy2215          68 SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGD---------------LANIRTGRYCIISKGVVIRPPFKKFAKGFLV  132 (172)
Q Consensus        68 ~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGd---------------l~~V~IG~~c~Ig~navI~p~~~~~~~g~~~  132 (172)
                      .+..|...+.|....++.||+++.|++++.|...               ..+++||++|.||++|+|.++         +
T Consensus        83 ~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~g---------v  153 (190)
T 3hjj_A           83 KSFFANFNCVILDVCEVRIGDHCMFAPGVHIYTATHPLHPVERNSGKEYGKPVKIGNNVWVGGGAIINPG---------V  153 (190)
T ss_dssp             TTCEECTTCEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTSSEEEECCEEECTTCEECTTCEECTT---------C
T ss_pred             CceeeCCCeEEEeCCCeEECCceEEcCCcEEecCCccCchhhccccccccCCeEECCCCEECCCCEECCC---------C
Confidence            3444556677776568999999999999999532               126999999999999999998         5


Q ss_pred             eeCCCeEECCCcEEE
Q psy2215         133 YPGSTVYLVFTASVR  147 (172)
Q Consensus       133 ~pGd~V~IG~navI~  147 (172)
                      .+|++|.||++|+|.
T Consensus       154 ~IG~~~vIgagsvV~  168 (190)
T 3hjj_A          154 SIGDNAVIASGAVVT  168 (190)
T ss_dssp             EECTTCEECTTCEEC
T ss_pred             EECCCCEECCCCEEC
Confidence            579999999999998

>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3

Probab=98.73  E-value=4.1e-08  Score=77.93  Aligned_cols=75  Identities=15%  Similarity=0.135  Sum_probs=58.8

Q ss_pred             eecCCeEecccceEECCCeEECCCcEEcCC---------------CcceEECCCCeeCCCCEEccCCccCCCceEEeeCC
Q psy2215          72 VSRKSLVAGAQNIVLTGKVIIQCDAVLRGD---------------LANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGS  136 (172)
Q Consensus        72 Is~~a~I~G~~nI~Igg~v~I~~~avIrGd---------------l~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd  136 (172)
                      +...+.|....++.||+++.|+++|.|...               ..++.||++|.||++|+|.++         +.+|+
T Consensus        81 I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v~Ig~~a~I~~g---------v~IG~  151 (182)
T 1ocx_A           81 ANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPG---------VTIGD  151 (182)
T ss_dssp             ECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTTCEECTTCEECTT---------CEECT
T ss_pred             EeCCeEEEeccceEEcCCcEEeCCcEEEeCCCccChhhcccCccccCCeEEeCCeEECCCCEECCC---------cEECC
Confidence            444566655568999999999999999521               137999999999999999998         55799


Q ss_pred             CeEECCCcEEEecCCCeEECCCce
Q psy2215         137 TVYLVFTASVRLKSPFAQIYSYII  160 (172)
Q Consensus       137 ~V~IG~navI~i~~pga~IGs~v~  160 (172)
                      +++||++|+|.   .+  |.++++
T Consensus       152 ~~vIgagsvV~---~d--ip~~~v  170 (182)
T 1ocx_A          152 NVVVASGAVVT---KD--VPDNVV  170 (182)
T ss_dssp             TCEECTTCEEC---SC--BCSSEE
T ss_pred             CCEECCCCEEC---Cc--CCCCcE
Confidence            99999999998   32  455554

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}

Probab=98.73  E-value=4.3e-08  Score=84.29  Aligned_cols=30  Identities=17%  Similarity=-0.008  Sum_probs=19.0

Q ss_pred             EeeCCCeEECCCcEEE-ecCCCeEECCCcee
Q psy2215         132 VYPGSTVYLVFTASVR-LKSPFAQIYSYIIA  161 (172)
Q Consensus       132 ~~pGd~V~IG~navI~-i~~pga~IGs~v~i  161 (172)
                      +.+||+|.||++|+|. -.+.++.||+++.+
T Consensus       201 v~IGd~v~Ig~~~~I~~~~~~~~~Ig~~~~I  231 (341)
T 3eh0_A          201 VIIGDRVEIGACTTIDRGALDDTIIGNGVII  231 (341)
T ss_dssp             EEECSSCEECTTCEEECCSSSCEEECTTCEE
T ss_pred             EEECCCcEECCccEeeccccCceEeccceEE
Confidence            3458888888888885 22234555555553

>3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A*

Probab=98.73  E-value=3.5e-08  Score=86.26  Aligned_cols=91  Identities=11%  Similarity=0.085  Sum_probs=57.6

Q ss_pred             cccCCeeecCCeEecccceEECCCeEECCCcEEcCCC-------------cceEECCCCeeCCCCEEccCCccCCCceEE
Q psy2215          66 VASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDL-------------ANIRTGRYCIISKGVVIRPPFKKFAKGFLV  132 (172)
Q Consensus        66 ~~~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl-------------~~V~IG~~c~Ig~navI~p~~~~~~~g~~~  132 (172)
                      ..++.+|.+.+.|.-  +..||+++.|+++++|.-+.             ..+.||++|.|+++|+|+...+...+ ..+
T Consensus       158 I~~gv~I~P~AvI~~--gA~IGeGv~Igp~~fVniga~Ig~g~~In~~i~iGv~IGd~v~IgpGa~IgG~~~~~~~-~~V  234 (332)
T 3fsy_A          158 VPTGVRIADADRVRL--GAHLAPGTTVMHEGFVNYNAGTLGASMVEGRISAGVVVGDGSDVGGGASIMGTLSGGGT-HVI  234 (332)
T ss_dssp             CCTTCEESCGGGBBT--TEEECTTCEECTTCEECTTEEESSCCEECSEECTTCEECTTCEECTTCEECSBCC---C-CBC
T ss_pred             cCCCcEECCcCEECC--CCEECCCCEEccccEEEECCeECcCCEECCceecceEECCCCEECCCCEEcCCCCCCCc-cce
Confidence            345555655555532  45666666666655543110             13789999999999999865332111 236


Q ss_pred             eeCCCeEECCCcEEEecCCCeEECCCceeCCe
Q psy2215         133 YPGSTVYLVFTASVRLKSPFAQIYSYIIAPCP  164 (172)
Q Consensus       133 ~pGd~V~IG~navI~i~~pga~IGs~v~iga~  164 (172)
                      .+||+|+||+||+|     +++||++|++|+.
T Consensus       235 ~IGDnv~IGanAtI-----gVtIGd~~iIGAG  261 (332)
T 3fsy_A          235 SIGKRCLLGANSGL-----GISLGDDCVVEAG  261 (332)
T ss_dssp             EECTTCEECTTCEE-----CSCBCSSCEECTT
T ss_pred             EECCCCEECCCCEE-----eeEECCCCEECCC
Confidence            77999999999997     6777777775543

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A*

Probab=98.72  E-value=1.6e-08  Score=80.02  Aligned_cols=67  Identities=15%  Similarity=0.132  Sum_probs=54.2

Q ss_pred             ceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCC---CeEECCCc
Q psy2215          83 NIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSP---FAQIYSYI  159 (172)
Q Consensus        83 nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~p---ga~IGs~v  159 (172)
                      ...|++++.|++++.|.+. .++.||++|.|+++|+|.+.         +.+|++|.|+++|+|.   +   +++||++|
T Consensus        32 ~~~ig~~~~I~~~~~i~~~-~~v~IG~~~~I~~~~~I~~~---------v~IG~~~~I~~~~~I~---~~~~~~~IG~~~   98 (205)
T 3vbi_A           32 FLSVGKNVLISKKASIYNP-GVISIGNNVRIDDFCILSGK---------VTIGSYSHIAAYTALY---GGEVGIEMYDFA   98 (205)
T ss_dssp             CSEECSSEEEBTTSEEESG-GGEEECSSEEECTTCEEEEE---------EEECSSEEECTTCEEE---EEEEEEEECTTC
T ss_pred             CeEECCCCEECCCeEEccC-CeeEECCCCEECCCCEEccc---------eEECCCCEECCCeEEE---cCCccEEECCCC
Confidence            3578899999999999862 34999999999999999875         6779999999999994   2   26677766


Q ss_pred             eeC
Q psy2215         160 IAP  162 (172)
Q Consensus       160 ~ig  162 (172)
                      .++
T Consensus        99 ~Ig  101 (205)
T 3vbi_A           99 NIS  101 (205)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            643

>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A*

Probab=98.72  E-value=6.6e-08  Score=76.94  Aligned_cols=68  Identities=16%  Similarity=0.124  Sum_probs=55.6

Q ss_pred             eeecCCeEecccceEECCCeEECCCcEEcCCC---------------cceEECCCCeeCCCCEEccCCccCCCceEEeeC
Q psy2215          71 KVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDL---------------ANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPG  135 (172)
Q Consensus        71 ~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl---------------~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pG  135 (172)
                      .|...+.|.....|.||+++.|+++|.|..+.               .++.||++|.||.||+|.++         +.+|
T Consensus        84 ~I~~~~~i~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~g---------v~IG  154 (195)
T 3nz2_A           84 FINMNVVMLDGAPITIGDHVLIGPSTQFYTASHSLDYRRRQAWETICKPIVIEDDVWIGGNVVINQG---------VTIG  154 (195)
T ss_dssp             EECTTEEEECSSCEEECTTCEECTTCEEECEECCSSGGGTTTCCCEECCEEECTTCEECTTCEECTT---------CEEC
T ss_pred             EECcCCEEecCceEEECCCCEECCCCEEecCCCCcccccccccceecCCeEECCCCEEcCCCEECCC---------CEEC
Confidence            44455666555678999999999999997421               26899999999999999998         5579


Q ss_pred             CCeEECCCcEEE
Q psy2215         136 STVYLVFTASVR  147 (172)
Q Consensus       136 d~V~IG~navI~  147 (172)
                      +++.||++|+|.
T Consensus       155 ~~~vIgagsvV~  166 (195)
T 3nz2_A          155 ARSVVAANSVVN  166 (195)
T ss_dssp             TTCEECTTCEEC
T ss_pred             CCCEECCCCEEc
Confidence            999999999998

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=98.72  E-value=4.6e-08  Score=84.88  Aligned_cols=73  Identities=14%  Similarity=0.117  Sum_probs=43.5

Q ss_pred             cCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEc-----cCCccCCCceE----EeeCCCe
Q psy2215          68 SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIR-----PPFKKFAKGFL----VYPGSTV  138 (172)
Q Consensus        68 ~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~-----p~~~~~~~g~~----~~pGd~V  138 (172)
                      .+..|.+.+.|.+  ++.||.++.|+++++|++    +.||++|.|+++|+|+     ..... ..+..    ..+|++|
T Consensus       273 ~~~~i~~~~~i~~--~~~ig~~~~I~~~~~i~~----~~Ig~~~~I~~~~~i~~~~Ig~~~~i-g~~~~i~~~~~ig~~~  345 (459)
T 4fce_A          273 RDITIDTNVIIEG--HVILGDRVRIGTGCVLKN----CVIGDDSEISPYTVLEDARLDANCTV-GPFARLRPGAELAEGA  345 (459)
T ss_dssp             SSCEECTTEEEEE--EEEECTTCEECTTCEEES----CEECTTCEECSSCEEESCEECTTCEE-CSSEEECTTCEECTTC
T ss_pred             CCcEECCCeeecc--ceEECCCCEECCCCEEec----cEECCCCEECCCcEEeCCEECCCCEE-CCccEECCCcEECCCc
Confidence            4445566666665  588888888888888873    5555555555555432     11110 00000    2347888


Q ss_pred             EECCCcEEE
Q psy2215         139 YLVFTASVR  147 (172)
Q Consensus       139 ~IG~navI~  147 (172)
                      .||+++.|.
T Consensus       346 ~Ig~~~~i~  354 (459)
T 4fce_A          346 HVGNFVEIK  354 (459)
T ss_dssp             EEEEEEEEE
T ss_pred             EECCCeEEe
Confidence            888877776

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana}

Probab=98.71  E-value=7.6e-08  Score=81.45  Aligned_cols=80  Identities=15%  Similarity=0.032  Sum_probs=48.1

Q ss_pred             eEECCCeEECCCcEEcCCC---cceEECCCCeeCCCCEEccCCccC-----CCceE----EeeCCCeEECCCcEEEecCC
Q psy2215          84 IVLTGKVIIQCDAVLRGDL---ANIRTGRYCIISKGVVIRPPFKKF-----AKGFL----VYPGSTVYLVFTASVRLKSP  151 (172)
Q Consensus        84 I~Igg~v~I~~~avIrGdl---~~V~IG~~c~Ig~navI~p~~~~~-----~~g~~----~~pGd~V~IG~navI~i~~p  151 (172)
                      +.||+++.|++++.|....   .++.||++|.|++++.|..+...-     ..+..    +.+||+|+||.+++|+   +
T Consensus       109 i~IG~~~~I~~~~~I~~g~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~g~v~Igd~~~Ig~~~~V~---~  185 (305)
T 3t57_A          109 LCIGNNNEIREFCSIHRSSKPSDKTVIGDNNLIMGSCHIAHDCKIGDRNIFANNTLLAGHVVVEDNTHTAGASVVH---Q  185 (305)
T ss_dssp             EEECSSCEECTTCEEECCSSTTCCEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEEC---T
T ss_pred             EEECCCcccCceEEEeecccccCccEEccCccccceEEEeCceEeCCceEECCCcccCCCCEECCceEEcCCCEEc---C
Confidence            6677777777777764211   134555544444444443322210     00000    4569999999999999   9


Q ss_pred             CeEECCCceeCCeEE
Q psy2215         152 FAQIYSYIIAPCPLH  166 (172)
Q Consensus       152 ga~IGs~v~iga~i~  166 (172)
                      +++||+++.+++...
T Consensus       186 ~v~IG~~a~ig~gs~  200 (305)
T 3t57_A          186 FCHIGSFAFIGGGSV  200 (305)
T ss_dssp             TCEECTTCEECTTCE
T ss_pred             CeEECCCCEEcCCCe
Confidence            999999999776543

>4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A

Probab=98.70  E-value=5.3e-08  Score=84.49  Aligned_cols=15  Identities=20%  Similarity=0.206  Sum_probs=9.2

Q ss_pred             eeCCCeEECCCcEEE
Q psy2215         133 YPGSTVYLVFTASVR  147 (172)
Q Consensus       133 ~pGd~V~IG~navI~  147 (172)
                      .+||+|+||++|+|.
T Consensus       207 ~IGd~v~IG~~~~I~  221 (357)
T 4e79_A          207 LIGNDVRIGSNCSID  221 (357)
T ss_dssp             EECTTCEECTTCEEC
T ss_pred             EEcCCcEEccccEEe
Confidence            346666666666665

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=98.70  E-value=5.5e-08  Score=84.32  Aligned_cols=90  Identities=13%  Similarity=0.059  Sum_probs=50.4

Q ss_pred             CCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEcc-----CCccCCCceE----EeeCCCeE
Q psy2215          69 GNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRP-----PFKKFAKGFL----VYPGSTVY  139 (172)
Q Consensus        69 gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p-----~~~~~~~g~~----~~pGd~V~  139 (172)
                      +..|...+.|.+  ++.||+++.|+++++|+ +   +.||++|.|+++|+|..     .... ..+..    ..+|++|.
T Consensus       271 ~~~I~~~~~i~~--~~~Ig~~~~I~~~~~i~-~---~~ig~~~~I~~~~~i~~~~ig~~~~I-~~~~~i~~~~~ig~~~~  343 (456)
T 2v0h_A          271 DVEIDVNVIIEG--NVKLGDRVKIGTGCVLK-N---VVIGNDVEIKPYSVLEDSIVGEKAAI-GPFSRLRPGAELAAETH  343 (456)
T ss_dssp             SCEECSSEEEEE--EEEECTTCEECTTCEEE-E---EEECTTCEECSSCEEEEEEECTTCEE-CSSEEECTTCEECTTCE
T ss_pred             CCEEcCCcEEcC--CcEECCCCEECCCCEEE-e---EEEeCCCEEcCCeEEccCcCCCCcEE-CCccEECCCCEECCCCE
Confidence            333444555544  68888888888888886 2   66666666665554431     1110 00000    23477777


Q ss_pred             ECCCcEEE--ecCC-----------CeEECCCceeCCeE
Q psy2215         140 LVFTASVR--LKSP-----------FAQIYSYIIAPCPL  165 (172)
Q Consensus       140 IG~navI~--i~~p-----------ga~IGs~v~iga~i  165 (172)
                      ||+++.|.  ++.+           +++||++|.+|+..
T Consensus       344 ig~~~~i~~~~i~~~~~i~~~~~~~~~~Ig~~v~Ig~~~  382 (456)
T 2v0h_A          344 VGNFVEIKKSTVGKGSKVNHLTYVGDSEIGSNCNIGAGV  382 (456)
T ss_dssp             EEEEEEEESCEECTTCEEEEEEEEESEEECTTCEECTTC
T ss_pred             ECCCCEEeccEECCCCEeccceeecCcEECCCcEECCce
Confidence            77777775  2222           24666666655443

>3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A

Probab=98.69  E-value=9.3e-08  Score=76.29  Aligned_cols=68  Identities=16%  Similarity=0.139  Sum_probs=55.7

Q ss_pred             eeecCCeEecccceEECCCeEECCCcEEcCC---------------CcceEECCCCeeCCCCEEccCCccCCCceEEeeC
Q psy2215          71 KVSRKSLVAGAQNIVLTGKVIIQCDAVLRGD---------------LANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPG  135 (172)
Q Consensus        71 ~Is~~a~I~G~~nI~Igg~v~I~~~avIrGd---------------l~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pG  135 (172)
                      .|...+.|.....+.||+++.|+++|.|..+               ..+++||++|.||.+|+|.++         +.+|
T Consensus        82 ~I~~~~~i~~~~~v~IG~~v~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~g---------v~IG  152 (199)
T 3ftt_A           82 YVNTNCYFMDGGQITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSNTWFGGHVAVLPG---------VTIG  152 (199)
T ss_dssp             EECTTEEEECSSCEEECSSEEECTTCEEECEECCSSHHHHHTTEEEECCEEECSSEEECTTCEECTT---------CEEC
T ss_pred             EECCCeEEecCCEEEECCCCEECCCCEEecCCCcCccccccccceecCCeEEcCCcEEcCCCEECCC---------CEEC
Confidence            3445556655557999999999999999432               236999999999999999998         5579


Q ss_pred             CCeEECCCcEEE
Q psy2215         136 STVYLVFTASVR  147 (172)
Q Consensus       136 d~V~IG~navI~  147 (172)
                      +++.||++|+|.
T Consensus       153 ~~~vIgagsvV~  164 (199)
T 3ftt_A          153 EGSVIGAGSVVT  164 (199)
T ss_dssp             TTCEECTTCEEC
T ss_pred             CCCEECCCCEEC
Confidence            999999999998

>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A*

Probab=98.67  E-value=1e-07  Score=76.20  Aligned_cols=59  Identities=10%  Similarity=0.070  Sum_probs=47.6

Q ss_pred             ceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215          83 NIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR  147 (172)
Q Consensus        83 nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~  147 (172)
                      ++.||.++.|+++++|+++-..+.||++|.|++++++.....      .+.+|++|.||++|+|.
T Consensus        58 ~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~Ig~~~ii~~~~~------~i~IG~~~~Ig~~~~I~  116 (215)
T 2wlg_A           58 TLFIADDVEIMGLVCSLHSDCSLQIQAKTTMGNGEITIAEKG------KISIGKDCMLAHGYEIR  116 (215)
T ss_dssp             EEEECTTCEEESEEEEECTTCEEEECTTCEECSEEEEECTTC------EEEECTTCEECTTEEEE
T ss_pred             EEEECCCCEECCCeEEEcCCceEEEcCCCEECCEEEEEeCCC------CEEECCCCEEcCCEEEE
Confidence            588999999999999986555799999999999666653211      15679999999999998

>3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A

Probab=98.65  E-value=7.8e-08  Score=80.94  Aligned_cols=65  Identities=9%  Similarity=0.042  Sum_probs=38.5

Q ss_pred             cCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215          68 SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR  147 (172)
Q Consensus        68 ~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~  147 (172)
                      .+-++.+.+.|..  ++.|+.++.|+++ .|..+   +.||++|.|+++++|++.         ..+|++|.|+++++|.
T Consensus       103 ~g~~I~p~a~I~~--~~~Ig~g~~I~~~-~i~~~---~~IG~~~~I~~~~~Ig~~---------~~IG~~v~I~~~~~i~  167 (276)
T 3gos_A          103 EGFRVVPPATVRK--GAFIARNTVLMPS-YVNIG---AFVDEGTMVDTWATVGSC---------AQIGKNVHLSGGVGIG  167 (276)
T ss_dssp             HCCEECTTCEEBT--TCEECTTCEECSE-EECTT---CEECTTCEECTTEEECTT---------CEECTTCEECTTCEEC
T ss_pred             CCcEECCCcEECC--CCEECCCCEEcCC-EEcCC---eEECCCCEECCCCEECCC---------CEECCCCEECCCCEEC
Confidence            3444554554433  4555555555554 44433   777777777777777765         3357777777777663

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp}

Probab=98.65  E-value=7.5e-08  Score=87.86  Aligned_cols=73  Identities=11%  Similarity=0.065  Sum_probs=44.1

Q ss_pred             ceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEcc-----CCccCCCce---EEeeCCCeEECCCcEEEecCCCeE
Q psy2215          83 NIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRP-----PFKKFAKGF---LVYPGSTVYLVFTASVRLKSPFAQ  154 (172)
Q Consensus        83 nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p-----~~~~~~~g~---~~~pGd~V~IG~navI~i~~pga~  154 (172)
                      ...++.++.|++++++.++   +.||++|.|+++|+|++     .... ..+.   ...+|++|+||++|+|.    +++
T Consensus       273 ~~~I~~~a~I~p~a~i~g~---v~IG~~~~I~~~a~I~~v~IG~~~~I-~~~~~I~~~vIG~~~~Ig~~a~I~----gv~  344 (496)
T 3c8v_A          273 GAGSASGASVSGYAVIKGD---TVIGENVLVSQRAYLDNAWMGKGSNA-QENCYIINSRLERNCVTAHGGKII----NAH  344 (496)
T ss_dssp             ---CCTTCEECTTSEEESS---CEECTTCEECTTCEEEEEEECTTCEE-CTTCEEEEEEEEESCEECTTCEEE----SEE
T ss_pred             CcccCCCcEECCCcEEeCC---eEECCCCEECCCcEEeceEecCCCEE-CCCceEeceEeCCCCEECCCcEEc----Cce
Confidence            4566778888888888876   78888888887777722     1110 0111   12336777777777777    566


Q ss_pred             ECCCceeCC
Q psy2215         155 IYSYIIAPC  163 (172)
Q Consensus       155 IGs~v~iga  163 (172)
                      ||++|.+|+
T Consensus       345 IGd~v~IG~  353 (496)
T 3c8v_A          345 LGDMIFTGF  353 (496)
T ss_dssp             EEETCEECT
T ss_pred             ECCCcEECC
Confidence            666666544

>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli}

Probab=98.61  E-value=1.4e-07  Score=77.46  Aligned_cols=75  Identities=17%  Similarity=0.150  Sum_probs=57.1

Q ss_pred             cceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCC---------
Q psy2215          82 QNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPF---------  152 (172)
Q Consensus        82 ~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pg---------  152 (172)
                      .++.||.++.|.++++|... .++.||++|.|+++|.|.+...      .+.+|++|.||++|+|.   ..         
T Consensus        84 ~~v~Ig~~~~I~~~~~i~~g-~~v~IG~~~~Ig~~~~I~~~~~------~~~IG~~~~Ig~~~~I~---~~~~~~~~~~~  153 (252)
T 3jqy_B           84 NYVRIHKNSKIKGDIVATKG-SKVIIGRRTTIGAGFEVVTDKC------NVTIGHDCMIARDVILR---ASDGHPIFDIH  153 (252)
T ss_dssp             CEEEECTTCEEEEEEEEESS-CEEEECTTCEECTTCEEECSSS------EEEECTTCEECSSEEEE---CSCSSCEEETT
T ss_pred             CeEEECCCCEECCceEEccC-CEEEECCCCEECCCcEEEeCCC------CeEECCCCEEcCCcEEe---cCCCccccccc
Confidence            35678888888888888632 4689999999999999986321      16779999999999998   33         


Q ss_pred             ----------eEECCCceeCCeEE
Q psy2215         153 ----------AQIYSYIIAPCPLH  166 (172)
Q Consensus       153 ----------a~IGs~v~iga~i~  166 (172)
                                ++||++|.+|+...
T Consensus       154 ~~~~~~~~~~v~Igd~v~IG~~a~  177 (252)
T 3jqy_B          154 SKKRINWAKDIIISSYVWVGRNVS  177 (252)
T ss_dssp             TCBBCCCCCCEEECSSCEECSSEE
T ss_pred             ccccccccCCeEEecCcEECCCCE
Confidence                      58888888666543

>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A*

Probab=98.61  E-value=1.3e-07  Score=76.72  Aligned_cols=67  Identities=19%  Similarity=0.176  Sum_probs=55.2

Q ss_pred             eecCCeEecccceEECCCeEECCCcEEcCCC---------------cceEECCCCeeCCCCEEccCCccCCCceEEeeCC
Q psy2215          72 VSRKSLVAGAQNIVLTGKVIIQCDAVLRGDL---------------ANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGS  136 (172)
Q Consensus        72 Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl---------------~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd  136 (172)
                      +...+.|.....+.||+++.|+++|.|....               .+++||++|.||.+|+|.++         +.+|+
T Consensus        84 I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~g---------v~IG~  154 (203)
T 1krr_A           84 ANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPG---------VTIGD  154 (203)
T ss_dssp             ECSCEEEECSSCEEECSSCEECSSCEEESEECCSSTTTCTTCCBEECCEEECTTCEECTTCEECTT---------CEECT
T ss_pred             ECCccEEecccceEECCCCEECCCCEEecCCcccchhhcccCceeCCCcEECCCeEECCCCEEeCC---------eEECC
Confidence            3445566655679999999999999996321               27999999999999999998         55799


Q ss_pred             CeEECCCcEEE
Q psy2215         137 TVYLVFTASVR  147 (172)
Q Consensus       137 ~V~IG~navI~  147 (172)
                      +++||++|+|.
T Consensus       155 ~~vIgagsvV~  165 (203)
T 1krr_A          155 NSVIGAGSIVT  165 (203)
T ss_dssp             TCEECTTCEEC
T ss_pred             CCEECCCCEEC
Confidence            99999999998

>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus}

Probab=98.60  E-value=1.7e-07  Score=76.73  Aligned_cols=81  Identities=17%  Similarity=0.181  Sum_probs=56.5

Q ss_pred             cceEECCCeEECCC-------cEEcCCC---cceEECCCCeeCCCCEEccC--CccC----------CC----------c
Q psy2215          82 QNIVLTGKVIIQCD-------AVLRGDL---ANIRTGRYCIISKGVVIRPP--FKKF----------AK----------G  129 (172)
Q Consensus        82 ~nI~Igg~v~I~~~-------avIrGdl---~~V~IG~~c~Ig~navI~p~--~~~~----------~~----------g  129 (172)
                      .++.||+.++|+++       +++....   ..+.||++|.|+++|+|...  .+.+          ..          +
T Consensus        33 ~~i~IG~~t~i~~~~~~~~~~~vi~~~~~i~~~v~IG~~~~I~~gv~I~~~~~~h~~~~~~~~~~~i~~~~~~~~~~~~~  112 (219)
T 4e8l_A           33 ENILVGEYSYYDSKRGESFEDQVLYHYEVIGDKLIIGRFCSIGPGTTFIMNGANHRMDGSTYPFHLFRMGWEKYMPSLKD  112 (219)
T ss_dssp             SSEEECTTCEEECSSSCCGGGGEESCCTTTCCCEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTTCGGGCCCTTT
T ss_pred             CCEEECCccEEcCCcCceecceEEeecceeCCCEEECCCCEEcCCCEEEeCCCcceecCCCcceeEecCccccccccccc
Confidence            46777777777753       3443221   26999999999999999531  0100          00          0


Q ss_pred             ----eEEeeCCCeEECCCcEEEecCCCeEECCCceeCCeE
Q psy2215         130 ----FLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCPL  165 (172)
Q Consensus       130 ----~~~~pGd~V~IG~navI~i~~pga~IGs~v~iga~i  165 (172)
                          -.+.+||+|+||++|+|.   ++++||+++.+++..
T Consensus       113 ~~~~g~v~Igd~v~IG~~a~I~---~gv~IG~~~~Igags  149 (219)
T 4e8l_A          113 LPLKGDIEIGNDVWIGRDVTIM---PGVKIGDGAIIAAEA  149 (219)
T ss_dssp             SCCCCCEEECSSCEECTTCEEC---TTCEECTTCEECTTC
T ss_pred             ccccCCcEECCCeEECCCCEEc---CCCEECCCCEECCCC
Confidence                014569999999999999   999999999976654

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A*

Probab=98.59  E-value=1.9e-07  Score=80.89  Aligned_cols=34  Identities=15%  Similarity=-0.066  Sum_probs=20.6

Q ss_pred             EeeCCCeEECCCcEEEe-----------------cCCCeEECCCceeCCeE
Q psy2215         132 VYPGSTVYLVFTASVRL-----------------KSPFAQIYSYIIAPCPL  165 (172)
Q Consensus       132 ~~pGd~V~IG~navI~i-----------------~~pga~IGs~v~iga~i  165 (172)
                      +.+|++|.|+++++|.=                 ....+.||++|.+|+..
T Consensus       191 ~~IG~~~~I~~~~~Ig~~~~~~~~~~~~~~~~i~~~g~v~Ig~~v~IG~~~  241 (374)
T 2iu8_A          191 VSIGKRVIIQPGAVIGSCGFGYVTSAFGQHKHLKHLGKVIIEDDVEIGANT  241 (374)
T ss_dssp             EEECTTCEECTTCEEEEECSCEEEETTTEEEECCCCCCEEECTTCEECTTC
T ss_pred             ceECCCCEECCCCEECcCCcccccccCCceeEeeeeccEEECCCCEECCCc
Confidence            44577777777777740                 00137778888766543

>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A*

Probab=98.57  E-value=1.5e-07  Score=76.38  Aligned_cols=91  Identities=15%  Similarity=0.167  Sum_probs=61.6

Q ss_pred             eecCCeEecccceEECCCeEECCC-------cEEcCCC---cceEECCCCeeCCCCEEccC--CccCC----------C-
Q psy2215          72 VSRKSLVAGAQNIVLTGKVIIQCD-------AVLRGDL---ANIRTGRYCIISKGVVIRPP--FKKFA----------K-  128 (172)
Q Consensus        72 Is~~a~I~G~~nI~Igg~v~I~~~-------avIrGdl---~~V~IG~~c~Ig~navI~p~--~~~~~----------~-  128 (172)
                      +..+..+.+..++.||++++|+++       ++|....   ..+.||++|.|+++++|..+  .+.+.          . 
T Consensus        18 ~~~~~~i~~~~~i~IG~~~~I~~~~~~~i~~~~i~~~~~i~~~v~IG~~~~Ig~gv~I~~~~~~h~~~~~~~~~~~i~~~   97 (209)
T 1mr7_A           18 QFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNG   97 (209)
T ss_dssp             EEHHHHHTTSTTEEECTTCEEECSSSCCGGGGEESCCGGGCCCEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTT
T ss_pred             EEhhheEcCCCCeEECCCcEEcCCCceEEeceEEeeccccCCCEEECCCCEEcCCCEEEeCCCcccccCccccceEECCc
Confidence            344445555468888888888875       3333211   15999999999999988421  11110          0 


Q ss_pred             ---------c----eEEeeCCCeEECCCcEEEecCCCeEECCCceeCCeE
Q psy2215         129 ---------G----FLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCPL  165 (172)
Q Consensus       129 ---------g----~~~~pGd~V~IG~navI~i~~pga~IGs~v~iga~i  165 (172)
                               +    -.+.+||+|+||++|+|.   ++++||+++.+++..
T Consensus        98 ~~~~~~i~~~~~~~~~v~Ig~~v~IG~~a~I~---~gv~Ig~~~~Igags  144 (209)
T 1mr7_A           98 WEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIM---PGVKIGDGAIVAANS  144 (209)
T ss_dssp             GGGGCCCGGGSCCCCCEEECSSCEECTTCEEC---TTCEECTTCEECTTC
T ss_pred             ccccccccccccccCCcEECCCCEEcCCCEEc---CCCEECCCCEEcCCC
Confidence                     0    014569999999999999   999999999976653

>3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis}

Probab=98.55  E-value=1.6e-07  Score=80.43  Aligned_cols=51  Identities=10%  Similarity=0.033  Sum_probs=27.3

Q ss_pred             eEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215          84 IVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR  147 (172)
Q Consensus        84 I~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~  147 (172)
                      +.|+++++|+++ +|..+   +.||++|.|+++++|++.         ..+|++|.|++++.|.
T Consensus       142 v~Ig~g~~I~~~-~I~~~---~~IG~~~~I~~~~~Ig~~---------~~IG~~v~I~~~~~i~  192 (304)
T 3eg4_A          142 AYIAPNAILMPS-FVNLG---AYVDKGAMIDTWATVGSC---------AQIGKNVHLSGGVGIG  192 (304)
T ss_dssp             CEECTTCEECSE-EECTT---CEECTTCEECTTEEECTT---------CEECTTCEECTTCEEC
T ss_pred             cEECCCCEEeCC-EECCC---CEECCCcEEcCCcEECCC---------CccCCCcEECCCCEEC
Confidence            344444444443 33333   556666666666666554         3346666666666665

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=98.50  E-value=5e-07  Score=78.82  Aligned_cols=68  Identities=10%  Similarity=0.154  Sum_probs=38.2

Q ss_pred             CCeeecCCeEecccceEECCCeEECCCcEEcC----C--------CcceEECCCCeeCCCCEEccCCccCCCceEEeeCC
Q psy2215          69 GNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRG----D--------LANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGS  136 (172)
Q Consensus        69 gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrG----d--------l~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd  136 (172)
                      +..|.+.+.|.+  ++.||++++|+++++|++    +        +..+.||++|.|+++|+|++.         ..+|+
T Consensus       280 ~~~i~~~~~i~~--~~~ig~~~~I~~~~~i~~~~ig~~~~i~~~~i~~~~Ig~~~~Ig~~~~i~~~---------~~ig~  348 (468)
T 1hm9_A          280 EVQIEANVILKG--QTKIGAETVLTNGTYVVDSTIGAGAVITNSMIEESSVADGVTVGPYAHIRPN---------SSLGA  348 (468)
T ss_dssp             TCEECSSCEEES--SCEECTTCEECTTCEEESCEECTTCEECSCEEESCEECTTCEECSSCEECSS---------CEECT
T ss_pred             CCEECCCcEECC--CCEECCCCEECCCCEEeccEEeCCcEEEEEEEeccccCCCcEECCceEEecC---------cEECC
Confidence            344445555554  678888888888877752    0        002345555555555555543         23466


Q ss_pred             CeEECCCcEEE
Q psy2215         137 TVYLVFTASVR  147 (172)
Q Consensus       137 ~V~IG~navI~  147 (172)
                      +|.||+++.|.
T Consensus       349 ~~~Ig~~~~i~  359 (468)
T 1hm9_A          349 QVHIGNFVEVK  359 (468)
T ss_dssp             TCEEEEEEEEE
T ss_pred             ccEECCCcEEe
Confidence            66666655554

>3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei}

Probab=98.47  E-value=4.3e-07  Score=78.36  Aligned_cols=16  Identities=25%  Similarity=0.324  Sum_probs=6.1

Q ss_pred             eEECCCCeeCCCCEEc
Q psy2215         105 IRTGRYCIISKGVVIR  120 (172)
Q Consensus       105 V~IG~~c~Ig~navI~  120 (172)
                      +.||++|.||++|.|+
T Consensus       187 ~~Ig~~~~IG~~v~I~  202 (316)
T 3tk8_A          187 ATVGSCAQIGKNVHLS  202 (316)
T ss_dssp             EEECTTCEECTTCEEC
T ss_pred             eEECCCCEECCCCEEc
Confidence            3333333333333333

>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus}

Probab=98.47  E-value=8.2e-07  Score=76.05  Aligned_cols=71  Identities=10%  Similarity=0.151  Sum_probs=48.4

Q ss_pred             cCCeeecCCeEecccceEECCCeEECCCcEEcCCC-----------cceEECCCCeeCCCCEEccCCccCCCceEEeeCC
Q psy2215          68 SGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDL-----------ANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGS  136 (172)
Q Consensus        68 ~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl-----------~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd  136 (172)
                      .+.+|.+.+.|.-..++.||+++.|+++|.|...+           .+++||++|.||+||+|.++         +.+|+
T Consensus       169 p~a~IG~~v~I~hg~gvvIG~~~~IGd~v~I~~gvtIg~~~~~~~~r~~~IGd~v~IGaga~Il~g---------v~IG~  239 (287)
T 3mc4_A          169 PAARLGSGLFLDHATGLVVGETAVVEDNVSILHGVTLGGTGKSSGDRHPKIRQGVLIGAGAKILGN---------IQVGQ  239 (287)
T ss_dssp             TTCEECSSCEEESCTTCEECTTCEECSSCEEETTCEEEC-----CCCSCEECTTCEECTTCEEESS---------CEECT
T ss_pred             CCCEECCCeEEccCCCeEECCCeEECCCCEEcCCCEEcCCcccCCCcCCEECCCCEECCCCEECCC---------cEECC
Confidence            34445555555422355566666666555554331           14789999999999999887         55799


Q ss_pred             CeEECCCcEEE
Q psy2215         137 TVYLVFTASVR  147 (172)
Q Consensus       137 ~V~IG~navI~  147 (172)
                      ++.||++++|.
T Consensus       240 ~a~IGagsvV~  250 (287)
T 3mc4_A          240 CSKIAAGSVVL  250 (287)
T ss_dssp             TCEECTTCEEC
T ss_pred             CCEECCCCEEc
Confidence            99999999998

>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3

Probab=98.42  E-value=7.4e-07  Score=71.43  Aligned_cols=57  Identities=19%  Similarity=0.179  Sum_probs=48.5

Q ss_pred             cceEECCCeEECCCcEEcCC--------------------------------CcceEECCCCeeCCCCEEccCCccCCCc
Q psy2215          82 QNIVLTGKVIIQCDAVLRGD--------------------------------LANIRTGRYCIISKGVVIRPPFKKFAKG  129 (172)
Q Consensus        82 ~nI~Igg~v~I~~~avIrGd--------------------------------l~~V~IG~~c~Ig~navI~p~~~~~~~g  129 (172)
                      .++.||.+|.|+++|+|...                                ..+++||++|.||.+|+|.+.       
T Consensus        57 ~~v~IG~~~~I~~~v~i~~~~~~~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~IG~~v~IG~~a~I~~g-------  129 (212)
T 3eev_A           57 DKLVIGSFCSIGSGAVFMMAGNQGHRSDWISTFPFFYQDNDNFADARDGFTRSGDTIIGHDVWIGTEAMIMPG-------  129 (212)
T ss_dssp             CCEEECSSCEECTTCEEECSTTTTCCTTSSCCSCGGGSCCGGGTTCCCCCCCCCCEEECSSCEECTTCEECTT-------
T ss_pred             CCcEECCCCEECCCCEEEeCCCCcccccceeeccceeecccccccccCCcccCCCeEECCCCEECCCCEEcCC-------
Confidence            37899999999999988321                                126999999999999999998       


Q ss_pred             eEEeeCCCeEECCCcEEE
Q psy2215         130 FLVYPGSTVYLVFTASVR  147 (172)
Q Consensus       130 ~~~~pGd~V~IG~navI~  147 (172)
                        +.+||++.||++|+|.
T Consensus       130 --v~IG~~~iIgagsvV~  145 (212)
T 3eev_A          130 --VKIGHGAIIASRSVVT  145 (212)
T ss_dssp             --CEECTTCEECTTCEEC
T ss_pred             --CEECCCCEECCCCEEc
Confidence              5579999999999998

>3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A*

Probab=98.39  E-value=7.3e-07  Score=77.94  Aligned_cols=59  Identities=15%  Similarity=0.222  Sum_probs=50.1

Q ss_pred             ceEECCCeEECCCcEEcCCC-----cceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEE
Q psy2215          83 NIVLTGKVIIQCDAVLRGDL-----ANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQI  155 (172)
Q Consensus        83 nI~Igg~v~I~~~avIrGdl-----~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~I  155 (172)
                      .+.||+++.|+++|+|.++.     .++.||++|.||+||+|  +         +.+||+|.||++++|.   .+++|
T Consensus       207 Gv~IGd~v~IgpGa~IgG~~~~~~~~~V~IGDnv~IGanAtI--g---------VtIGd~~iIGAGSVVt---kdt~I  270 (332)
T 3fsy_A          207 GVVVGDGSDVGGGASIMGTLSGGGTHVISIGKRCLLGANSGL--G---------ISLGDDCVVEAGLYVT---AGTRV  270 (332)
T ss_dssp             TCEECTTCEECTTCEECSBCC---CCBCEECTTCEECTTCEE--C---------SCBCSSCEECTTCEEC---TTCEE
T ss_pred             ceEECCCCEECCCCEEcCCCCCCCccceEECCCCEECCCCEE--e---------eEECCCCEECCCCEEC---CCCEE
Confidence            37899999999999998752     37999999999999999  4         4579999999999999   55544

>4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A

Probab=98.36  E-value=1.6e-06  Score=70.03  Aligned_cols=57  Identities=21%  Similarity=0.240  Sum_probs=47.8

Q ss_pred             cceEECCCeEECCCcEEc--C------------------------------CCcceEECCCCeeCCCCEEccCCccCCCc
Q psy2215          82 QNIVLTGKVIIQCDAVLR--G------------------------------DLANIRTGRYCIISKGVVIRPPFKKFAKG  129 (172)
Q Consensus        82 ~nI~Igg~v~I~~~avIr--G------------------------------dl~~V~IG~~c~Ig~navI~p~~~~~~~g  129 (172)
                      .++.||.+|.|+++++|.  |                              -..++.||++|.||.+|+|.+.       
T Consensus        65 ~~v~IG~~~~Ig~~v~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~IG~~v~IG~~a~I~~g-------  137 (220)
T 4hur_A           65 DKLIIGRFCSIGPGTTFIMNGANHRMDGSTYPFHLFRMGWEKYMPSLKDLPLKGDIEIGNDVWIGRDVTIMPG-------  137 (220)
T ss_dssp             CCEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTTGGGGCCCGGGSCCCCCEEECSSCEECTTCEECTT-------
T ss_pred             CCeEECCCCEECCCCEEEECCCCcccCCcceeeeeecccccccccccccccccCCeEECCCcEECCCCEEeCC-------
Confidence            468999999999999972  0                              0125999999999999999998       


Q ss_pred             eEEeeCCCeEECCCcEEE
Q psy2215         130 FLVYPGSTVYLVFTASVR  147 (172)
Q Consensus       130 ~~~~pGd~V~IG~navI~  147 (172)
                        +.+|+++.||++|+|.
T Consensus       138 --v~IG~gavIgagsvV~  153 (220)
T 4hur_A          138 --VKIGDGAIIAAEAVVT  153 (220)
T ss_dssp             --CEECTTCEECTTCEEC
T ss_pred             --CEECCCCEEcCCCEEc
Confidence              5579999999999998

>3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A

Probab=98.33  E-value=1.1e-06  Score=77.16  Aligned_cols=59  Identities=14%  Similarity=0.139  Sum_probs=50.1

Q ss_pred             ceEECCCeEECCCcEEcCCC-----cceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEE
Q psy2215          83 NIVLTGKVIIQCDAVLRGDL-----ANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQI  155 (172)
Q Consensus        83 nI~Igg~v~I~~~avIrGdl-----~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~I  155 (172)
                      .+.||+++.|+++|+|.|+.     .+++||++|.||.|++|  +         +.+||+|.||++++|.   ++++|
T Consensus       230 gv~IGdnv~IgpGa~IgG~~~~~~~~~V~IGdnv~IGAnAtI--G---------VtIGd~~iIGAGSVVt---kdt~I  293 (347)
T 3r5d_A          230 GVFVGKGSDLGGGCSTMGTLSGGGNIVISVGEGCLIGANAGI--G---------IPLGDRNIVEAGLYIT---AGTKV  293 (347)
T ss_dssp             TCEECTTEEECTTCEECC------CCCCEECTTCEECTTCEE--C---------SCBCTTCEECTTCEEC---TTCEE
T ss_pred             eEEECCCCEECCCCEEccccCCCCccceEECCCCEECCCCEE--e---------eEECCCCEECCCCEEC---CCCEE
Confidence            37899999999999998752     36999999999999999  4         4569999999999999   77666

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=98.30  E-value=2.1e-06  Score=76.51  Aligned_cols=55  Identities=15%  Similarity=-0.095  Sum_probs=39.5

Q ss_pred             eEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECCCceeCCe
Q psy2215         105 IRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCP  164 (172)
Q Consensus       105 V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~iga~  164 (172)
                      +.||++|.||.++++-... .. .+..+.+||+|+||.||.|.   ++++||+++.+|+.
T Consensus       387 ~~Ig~~v~IG~g~i~~n~d-g~-~~~~t~IGd~~~iG~~~~l~---~~v~Ig~~~~i~ag  441 (501)
T 3st8_A          387 ADIGEYSNIGASSVFVNYD-GT-SKRRTTVGSHVRTGSDTMFV---APVTIGDGAYTGAG  441 (501)
T ss_dssp             EEECSSCEECTTCEEECBC-SS-SBCCEEECTTCEECTTCEEE---SSEEECTTCEECTT
T ss_pred             ceEcCCCEECCCEEEEccc-CC-cccCCEECCCcEECCCCEEc---CCcEECCCCEECCC
Confidence            6677777777777764311 00 11226679999999999999   99999999997653

>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A

Probab=98.24  E-value=1.4e-06  Score=75.27  Aligned_cols=44  Identities=16%  Similarity=0.154  Sum_probs=28.2

Q ss_pred             eEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECCCce
Q psy2215         105 IRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYII  160 (172)
Q Consensus       105 V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~  160 (172)
                      ++||++|.||+||+|.++         +.+|++|+||+|++|.   +++..++.+.
T Consensus       224 ~~IGd~v~IGaga~Ilgg---------v~IG~~a~IGagsvV~---~dVp~gs~vv  267 (313)
T 3q1x_A          224 PTVGDYVTIGTGAKVLGN---------IIVGSHVRIGANCWID---RDVDSNQTVY  267 (313)
T ss_dssp             CEECSSCEECTTCEEESS---------CEECSSEEECTTCEEC---SCBCSSEEC-
T ss_pred             CEECCCCEECCCCEECCC---------cEECCCCEECCCCEEC---CCcCCCCEEE
Confidence            366666666666666655         6677777777777777   6555444443

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*

Probab=98.19  E-value=8.1e-06  Score=71.18  Aligned_cols=19  Identities=16%  Similarity=0.183  Sum_probs=13.8

Q ss_pred             ceEECCCeEECCCcEEcCC
Q psy2215          83 NIVLTGKVIIQCDAVLRGD  101 (172)
Q Consensus        83 nI~Igg~v~I~~~avIrGd  101 (172)
                      ++.||.++.|+++|+|.+.
T Consensus       346 ~~~Ig~~~~Ig~~~~I~~~  364 (451)
T 1yp2_A          346 HSVVGLRSCISEGAIIEDS  364 (451)
T ss_dssp             SCEECTTCEECTTCEEESC
T ss_pred             ccEECCCCEECCCCEEcCc
Confidence            5677777777777777654

>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482}

Probab=98.18  E-value=6.2e-06  Score=71.21  Aligned_cols=34  Identities=15%  Similarity=-0.090  Sum_probs=28.5

Q ss_pred             eEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215         105 IRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR  147 (172)
Q Consensus       105 V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~  147 (172)
                      ++||++|.||+||+|.++         +.+|+++.||+||+|.
T Consensus       252 ~~IGd~V~IGaga~Il~g---------v~IGd~a~IGagsvV~  285 (310)
T 3f1x_A          252 PILEDDVIVYSNATILGR---------VTIGKGATVGGNIWVT  285 (310)
T ss_dssp             CEECTTCEECTTCEEESS---------CEECTTCEECSSCEEC
T ss_pred             CEECCCcEEcCCCEECCC---------cEECCCCEECCCCEEC
Confidence            378888888888888876         5569999999999988

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A

Probab=98.18  E-value=3.1e-06  Score=73.46  Aligned_cols=13  Identities=0%  Similarity=0.056  Sum_probs=6.3

Q ss_pred             CCCeEECCCcEEE
Q psy2215         135 GSTVYLVFTASVR  147 (172)
Q Consensus       135 Gd~V~IG~navI~  147 (172)
                      |++|.|+++|+|.
T Consensus       104 g~~~~I~~~s~I~  116 (334)
T 2pig_A          104 SDGARISDNVTIQ  116 (334)
T ss_dssp             ESSCEECTTCEEE
T ss_pred             cCCCEEeCCcEEe
Confidence            4444444444444

>1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A*

Probab=98.11  E-value=1.2e-05  Score=67.97  Aligned_cols=55  Identities=18%  Similarity=0.120  Sum_probs=38.7

Q ss_pred             eEECCCeEECCCcEEcCCC-----cceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE
Q psy2215          84 IVLTGKVIIQCDAVLRGDL-----ANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR  147 (172)
Q Consensus        84 I~Igg~v~I~~~avIrGdl-----~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~  147 (172)
                      ..||++|.|.++++|.+..     .+++||++|.||.|++|.++         +.+|+++.||+||+|.
T Consensus       164 ~~IG~~v~I~~gvtig~~~~~~~~~~~~IGd~v~IGaga~Il~g---------v~IG~~a~IGagsvV~  223 (267)
T 1ssq_A          164 SVIENDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGN---------IEVGKYAKIGANSVVL  223 (267)
T ss_dssp             CEECTTCEECTTCEEECCSSSCSSCSCEECTTCEECTTCEEESS---------CEECTTCEECTTCEEC
T ss_pred             eEECCCCEEcCCcEECCCcccCCCCCeEECCCeEEcCCCEEeCC---------cEECCCCEECCCCEEc
Confidence            3444444444444444421     14788999999999888887         5579999999999998

>1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6

Probab=98.10  E-value=1.2e-05  Score=68.85  Aligned_cols=70  Identities=20%  Similarity=0.214  Sum_probs=44.7

Q ss_pred             CCeeecCCeEecccceEECCCeEECCCc------EEcCCC-----cceEECCCCeeCCCCEEccCCccCCCceEEeeCCC
Q psy2215          69 GNKVSRKSLVAGAQNIVLTGKVIIQCDA------VLRGDL-----ANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGST  137 (172)
Q Consensus        69 gn~Is~~a~I~G~~nI~Igg~v~I~~~a------vIrGdl-----~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~  137 (172)
                      +.+|.+...|.-..++.||++++|+++|      +|.+..     ..++||++|.||.||+|.++         +.+|++
T Consensus       163 ~a~IG~gv~I~~g~gvvIG~~~~IG~~v~I~~gvtLg~~~~~~~~~~~~IGd~v~IGaga~Ilgg---------v~IG~~  233 (289)
T 1t3d_A          163 AAKIGRGIMLDHATGIVVGETAVIENDVSILQSVTLGGTGKSGGDRHPKIREGVMIGAGAKILGN---------IEVGRG  233 (289)
T ss_dssp             TCEECSSCEECSCTTCEECTTCEECSSCEECTTCEEECCSSSCSSCSCEECTTCEECTTCEEESS---------CEECTT
T ss_pred             CCEEcCCEEECCCCceEECCCcEECCCCEEcCCcEECCCccccCCCCeEECCCeEECCCCEEecC---------cEECCC
Confidence            3444444444312345555555555544      444321     14788888888888888876         557999


Q ss_pred             eEECCCcEEE
Q psy2215         138 VYLVFTASVR  147 (172)
Q Consensus       138 V~IG~navI~  147 (172)
                      +.||+||+|.
T Consensus       234 a~IGagsvV~  243 (289)
T 1t3d_A          234 AKIGAGSVVL  243 (289)
T ss_dssp             CEECTTCEEC
T ss_pred             CEECCCCEEc
Confidence            9999999998

>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A*

Probab=97.98  E-value=1.9e-05  Score=64.18  Aligned_cols=57  Identities=19%  Similarity=0.200  Sum_probs=47.5

Q ss_pred             cceEECCCeEECCCcEEc--CC------------------------------C-cceEECCCCeeCCCCEEccCCccCCC
Q psy2215          82 QNIVLTGKVIIQCDAVLR--GD------------------------------L-ANIRTGRYCIISKGVVIRPPFKKFAK  128 (172)
Q Consensus        82 ~nI~Igg~v~I~~~avIr--Gd------------------------------l-~~V~IG~~c~Ig~navI~p~~~~~~~  128 (172)
                      ..|.||.+|.|+++|+|.  |+                              + .+++||++|.||.+|+|.+.      
T Consensus        55 ~~i~IG~~~~Ig~~v~i~~~g~~~h~~~~~s~~p~~~~~~~~~~~~i~~~~~~~~~v~IG~~v~IG~~a~I~~g------  128 (212)
T 1xat_A           55 DKLVIGSFCSIGSGAAFIMAGNQGHRAEWASTFPFHFMHEEPAFAGAVNGYQPAGDTLIGHEVWIGTEAMFMPG------  128 (212)
T ss_dssp             CCEEECSSCEECTTCEEECSTTTTCCTTSSCCSCGGGCCSCGGGGGCCCCCCCCCCEEECTTCEECTTCEECTT------
T ss_pred             cCEEEcCCCEECCCCEEEeCCCCccccccccccceeeecccccccccccCceecCCeEECCCCEECCCCEEeCC------
Confidence            368999999999999872  21                              1 26999999999999999988      


Q ss_pred             ceEEeeCCCeEECCCcEEE
Q psy2215         129 GFLVYPGSTVYLVFTASVR  147 (172)
Q Consensus       129 g~~~~pGd~V~IG~navI~  147 (172)
                         +.+|+++.||++|+|.
T Consensus       129 ---v~Ig~~~~IgagsvV~  144 (212)
T 1xat_A          129 ---VRVGHGAIIGSRALVT  144 (212)
T ss_dssp             ---CEECTTCEECTTCEEC
T ss_pred             ---CEECCCCEECCCCEEc
Confidence               5579999999999998

>2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni}

Probab=97.91  E-value=1.4e-05  Score=71.06  Aligned_cols=62  Identities=15%  Similarity=0.174  Sum_probs=45.8

Q ss_pred             ceEECCCeEECCCcEEcCCCc-----ceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECC
Q psy2215          83 NIVLTGKVIIQCDAVLRGDLA-----NIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYS  157 (172)
Q Consensus        83 nI~Igg~v~I~~~avIrGdl~-----~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs  157 (172)
                      ++.||+++.|++++.|.+.+.     +++||++|.||.||+  +.         +.+||+|.||++++|.   +++.+..
T Consensus       264 ~vvIGdnv~Ig~ga~I~g~l~g~~~~~VvIGdnv~IGagAv--~G---------V~IGdgavIGAGsVVt---~dv~i~~  329 (387)
T 2rij_A          264 SAIVGEGSDVGGGASILGVLSGTSGNAISVGKACLLGANSV--TG---------IPLGDNCIVDAGIAVL---EGTKFLL  329 (387)
T ss_dssp             TCEECTTCEECTTCEECCBCSSTTCCBCEECTTCEECTTCE--EC---------SCBCTTCEECTTCEEC---TTCEEEE
T ss_pred             CCEECCCCEECCCceEcceecCCCccCeEEeCCCEECCCCc--CC---------cEECCCCEECCCCEEC---CCceeee
Confidence            456677777777776544333     489999999999998  44         4469999999999998   7777765


Q ss_pred             C
Q psy2215         158 Y  158 (172)
Q Consensus       158 ~  158 (172)
                      .
T Consensus       330 ~  330 (387)
T 2rij_A          330 K  330 (387)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}

Probab=97.89  E-value=1.4e-05  Score=69.28  Aligned_cols=46  Identities=15%  Similarity=0.075  Sum_probs=33.0

Q ss_pred             ceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE--ecCCCeEECCCce
Q psy2215         104 NIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR--LKSPFAQIYSYII  160 (172)
Q Consensus       104 ~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~--i~~pga~IGs~v~  160 (172)
                      ++.||++|.| ++++|..          ..+|++|+||++|+|.  ++++++.||+++.
T Consensus       324 ~~~ig~~~~I-~~~~i~~----------~~ig~~~~I~~~~~i~~~~i~~~~~i~~~~~  371 (420)
T 3brk_X          324 SSVVSGDCII-SGAALNR----------SLLFTGVRANSYSRLENAVVLPSVKIGRHAQ  371 (420)
T ss_dssp             SCEECSSCEE-ESCEEES----------CEECTTCEECTTCEEEEEEECTTCEECTTCE
T ss_pred             CCEECCCCEE-cCCEEeC----------cEEcCCCEECCCCEEcceEEcCCCEECCCCE
Confidence            3666666666 6666642          3469999999999998  6666666666655

>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus}

Probab=97.84  E-value=5.7e-05  Score=61.66  Aligned_cols=57  Identities=19%  Similarity=0.205  Sum_probs=47.8

Q ss_pred             cceEECCCeEECCCcEEcC-------------------C-------------CcceEECCCCeeCCCCEEccCCccCCCc
Q psy2215          82 QNIVLTGKVIIQCDAVLRG-------------------D-------------LANIRTGRYCIISKGVVIRPPFKKFAKG  129 (172)
Q Consensus        82 ~nI~Igg~v~I~~~avIrG-------------------d-------------l~~V~IG~~c~Ig~navI~p~~~~~~~g  129 (172)
                      .++.||.+|.|+++++|..                   +             ..++.||++|.||.+|+|.+.       
T Consensus        64 ~~v~IG~~~~I~~gv~I~~~~~~h~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~Igd~v~IG~~a~I~~g-------  136 (219)
T 4e8l_A           64 DKLIIGRFCSIGPGTTFIMNGANHRMDGSTYPFHLFRMGWEKYMPSLKDLPLKGDIEIGNDVWIGRDVTIMPG-------  136 (219)
T ss_dssp             CCEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTTCGGGCCCTTTSCCCCCEEECSSCEECTTCEECTT-------
T ss_pred             CCEEECCCCEEcCCCEEEeCCCcceecCCCcceeEecCcccccccccccccccCCcEECCCeEECCCCEEcCC-------
Confidence            4799999999999999841                   0             126999999999999999987       


Q ss_pred             eEEeeCCCeEECCCcEEE
Q psy2215         130 FLVYPGSTVYLVFTASVR  147 (172)
Q Consensus       130 ~~~~pGd~V~IG~navI~  147 (172)
                        +.+|+++.||++++|.
T Consensus       137 --v~IG~~~~IgagsvV~  152 (219)
T 4e8l_A          137 --VKIGDGAIIAAEAVVT  152 (219)
T ss_dssp             --CEECTTCEECTTCEEC
T ss_pred             --CEECCCCEECCCCEEc
Confidence              4569999999999988

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=97.77  E-value=0.00011  Score=65.38  Aligned_cols=34  Identities=15%  Similarity=0.428  Sum_probs=16.2

Q ss_pred             ceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEE
Q psy2215          83 NIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVI  119 (172)
Q Consensus        83 nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI  119 (172)
                      .+.|+.++.|.+++++.|.   +.||++|.|+++++|
T Consensus       283 dv~IG~dv~I~~~v~i~g~---~~Ig~~~~I~~~~~i  316 (501)
T 3st8_A          283 DVTIGRDTVIHPGTQLLGR---TQIGGRCVVGPDTTL  316 (501)
T ss_dssp             TCEECTTCEECSSEEEETT---CEECTTCEECSSCEE
T ss_pred             ceEECCcceecceeeecCc---cccccceEEeeceee
Confidence            3455555555555555544   444444444444433

>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A*

Probab=97.73  E-value=8.3e-05  Score=60.06  Aligned_cols=57  Identities=19%  Similarity=0.138  Sum_probs=46.3

Q ss_pred             cceEECCCeEECCCcEEcC-------------------C-------------CcceEECCCCeeCCCCEEccCCccCCCc
Q psy2215          82 QNIVLTGKVIIQCDAVLRG-------------------D-------------LANIRTGRYCIISKGVVIRPPFKKFAKG  129 (172)
Q Consensus        82 ~nI~Igg~v~I~~~avIrG-------------------d-------------l~~V~IG~~c~Ig~navI~p~~~~~~~g  129 (172)
                      .++.||.+|.|+++++|..                   +             ..++.||++|.||.+|+|.+.       
T Consensus        59 ~~v~IG~~~~Ig~gv~I~~~~~~h~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~v~Ig~~v~IG~~a~I~~g-------  131 (209)
T 1mr7_A           59 DKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPG-------  131 (209)
T ss_dssp             CCEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTTGGGGCCCGGGSCCCCCEEECSSCEECTTCEECTT-------
T ss_pred             CCEEECCCCEEcCCCEEEeCCCcccccCccccceEECCcccccccccccccccCCcEECCCCEEcCCCEEcCC-------
Confidence            3689999999999998731                   0             115899999999999999987       


Q ss_pred             eEEeeCCCeEECCCcEEE
Q psy2215         130 FLVYPGSTVYLVFTASVR  147 (172)
Q Consensus       130 ~~~~pGd~V~IG~navI~  147 (172)
                        +.+|+++.||++++|.
T Consensus       132 --v~Ig~~~~Igags~V~  147 (209)
T 1mr7_A          132 --VKIGDGAIVAANSVVV  147 (209)
T ss_dssp             --CEECTTCEECTTCEEC
T ss_pred             --CEECCCCEEcCCCEEc
Confidence              4568999999999888

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A

Probab=97.67  E-value=8.9e-05  Score=64.30  Aligned_cols=21  Identities=14%  Similarity=0.010  Sum_probs=10.7

Q ss_pred             CCCeEECCCcEEEecCCCeEECCC
Q psy2215         135 GSTVYLVFTASVRLKSPFAQIYSY  158 (172)
Q Consensus       135 Gd~V~IG~navI~i~~pga~IGs~  158 (172)
                      ++++.|+.++++.   +++.|.++
T Consensus       121 ~~~~~I~~~~~i~---~~s~I~~~  141 (334)
T 2pig_A          121 REECAIYGDARVL---NQSEILAI  141 (334)
T ss_dssp             ESSEEECTTCEEE---SSCEEEC-
T ss_pred             cCCeEEecCCEEe---CCEEEeec
Confidence            5555555555555   55555433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	172
d1qrea_	210	gamma-carbonic anhydrase {Archaeon Methanosarcina	99.54
d1krra_	200	Galactoside acetyltransferase {Escherichia coli [T	99.36
d1ocxa_	182	Maltose O-acetyltransferase {Escherichia coli [Tax	99.33
d1fxja1	78	N-acetylglucosamine 1-phosphate uridyltransferase	99.33
d1v3wa_	173	Ferripyochelin binding protein {Archaeon Pyrococcu	99.07
d1xhda_	172	Putative acetyltransferase/acyltransferase BC4754	99.04
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	99.03
d1qrea_	210	gamma-carbonic anhydrase {Archaeon Methanosarcina	99.02
d1fxja1	78	N-acetylglucosamine 1-phosphate uridyltransferase	98.95
d2jf2a1	262	UDP N-acetylglucosamine acyltransferase {Escherich	98.89
d1j2za_	259	UDP N-acetylglucosamine acyltransferase {Helicobac	98.87
d1xata_	208	Xenobiotic acetyltransferase {Pseudomonas aerugino	98.77
d1mr7a_	203	Xenobiotic acetyltransferase {Enterococcus faecium	98.72
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	98.7
d2jf2a1	262	UDP N-acetylglucosamine acyltransferase {Escherich	98.69
d1ssqa_	241	Serine acetyltransferase {Haemophilus influenzae [	98.68
d1g97a1	196	N-acetylglucosamine 1-phosphate uridyltransferase	98.68
d3tdta_	274	Tetrahydrodipicolinate-N-succinlytransferase, THDP	98.62
d1xhda_	172	Putative acetyltransferase/acyltransferase BC4754	98.61
d1ocxa_	182	Maltose O-acetyltransferase {Escherichia coli [Tax	98.61
d1j2za_	259	UDP N-acetylglucosamine acyltransferase {Helicobac	98.54
d1krra_	200	Galactoside acetyltransferase {Escherichia coli [T	98.52
d1g97a1	196	N-acetylglucosamine 1-phosphate uridyltransferase	98.44
d1v3wa_	173	Ferripyochelin binding protein {Archaeon Pyrococcu	98.42
d2oi6a1	201	N-acetylglucosamine 1-phosphate uridyltransferase	98.38
d1yp2a1	135	Glucose-1-phosphate adenylyltransferase small subu	98.34
d2oi6a1	201	N-acetylglucosamine 1-phosphate uridyltransferase	98.31
d1ssqa_	241	Serine acetyltransferase {Haemophilus influenzae [	98.27
d1xata_	208	Xenobiotic acetyltransferase {Pseudomonas aerugino	98.15
d1mr7a_	203	Xenobiotic acetyltransferase {Enterococcus faecium	98.15
d1yp2a1	135	Glucose-1-phosphate adenylyltransferase small subu	98.06
d3tdta_	274	Tetrahydrodipicolinate-N-succinlytransferase, THDP	97.81
d2f9ca1	320	Hypothetical protein YdcK {Salmonella enterica [Ta	97.48
d2f9ca1	320	Hypothetical protein YdcK {Salmonella enterica [Ta	97.45

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

Probab=99.54  E-value=1.8e-14  Score=114.80  Aligned_cols=108  Identities=18%  Similarity=0.208  Sum_probs=80.8

Q ss_pred             ccCCchhhhhhccccccCCeeecCCeEecccceEECCCeEECCCcEEcCCCc-ceEECCCCeeCCCCEEccCCccCCCc-
Q psy2215          52 ESKSSHKILVYSGAVASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLA-NIRTGRYCIISKGVVIRPPFKKFAKG-  129 (172)
Q Consensus        52 D~~~p~~Ll~~~~~~~~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~-~V~IG~~c~Ig~navI~p~~~~~~~g-  129 (172)
                      ++..||.-....-.......|++.|.|.|  +++||+++.|+++|+||||.. +++||++|.|+++|+|+........+ 
T Consensus        11 ~~~~~~~~~~~~p~I~~~a~I~p~A~i~g--~V~IG~~~~Igp~~vIrgd~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~   88 (210)
T d1qrea_          11 NPVTPWNPEPSAPVIDPTAYIDPQASVIG--EVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGE   88 (210)
T ss_dssp             CCCBTTBSSCCCCEECTTCEECTTCEEEE--SEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSC
T ss_pred             CCCCCCCCCCCCCccCCCCEECCCCEEec--ceEECCCCEEccCeeeecccCCceEEcccceeeeeeEeccceeeccccc
Confidence            34455543322223456777888999998  799999999999999998854 89999999999999998654322211 


Q ss_pred             -------------eEEeeCCCeEECCCcEEEecCCCeEECCCceeCCe
Q psy2215         130 -------------FLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCP  164 (172)
Q Consensus       130 -------------~~~~pGd~V~IG~navI~i~~pga~IGs~v~iga~  164 (172)
                                   ..+.+|++|+||++|+|+   ++++||+++.+|+.
T Consensus        89 ~~~~~~~~~~~~~~~~~IG~~v~IG~~~~i~---g~~~IGd~~~IG~g  133 (210)
T d1qrea_          89 PIEDNIVEVDGKEYAVYIGNNVSLAHQSQVH---GPAAVGDDTFIGMQ  133 (210)
T ss_dssp             BCGGGCEEETTEEESEEECTTCEECTTCEEE---EEEEECTTCEECTT
T ss_pred             cccCccccccccccceeeccccccccccccc---cCCcccCCcEeeCC
Confidence                         124559999999999998   56888888886654

>d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Galactoside acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=1.7e-12  Score=103.38  Aligned_cols=82  Identities=15%  Similarity=0.168  Sum_probs=66.2

Q ss_pred             ccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCC-----Cc----eEEeeCCCeEECCCcEEEecCC
Q psy2215          81 AQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFA-----KG----FLVYPGSTVYLVFTASVRLKSP  151 (172)
Q Consensus        81 ~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~-----~g----~~~~pGd~V~IG~navI~i~~p  151 (172)
                      ..||.||.+++|+++|+|. +...|+||++|.|+++++|+...+...     .+    -++.+||+|+||.+|+|.   |
T Consensus        72 G~nv~IG~~~~I~~~~~I~-~~~~i~IG~~v~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I~---~  147 (200)
T d1krra_          72 GSNIHIGRNFYANFNLTIV-DDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVIN---P  147 (200)
T ss_dssp             STTEEECSSCEECSCEEEE-CSSCEEECSSCEECSSCEEESEECCSSTTTCTTCCBEECCEEECTTCEECTTCEEC---T
T ss_pred             CCccEECCccEECceEEEe-cCCCcEeCCCccccceeEEecccccceecccccceeecceEEEccCcccceeeecc---c
Confidence            3689999999999999997 345699999999999999986543221     11    124569999999999999   9


Q ss_pred             CeEECCCceeCCeEE
Q psy2215         152 FAQIYSYIIAPCPLH  166 (172)
Q Consensus       152 ga~IGs~v~iga~i~  166 (172)
                      +++||+++++|+...
T Consensus       148 Gv~IG~~~vIgagSv  162 (200)
T d1krra_         148 GVTIGDNSVIGAGSI  162 (200)
T ss_dssp             TCEECTTCEECTTCE
T ss_pred             ccccCCCcEEeCCCE
Confidence            999999999776543

>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Maltose O-acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=1.7e-12  Score=101.94  Aligned_cols=89  Identities=22%  Similarity=0.301  Sum_probs=71.2

Q ss_pred             cCCeEec--ccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccC-----CCce----EEeeCCCeEECC
Q psy2215          74 RKSLVAG--AQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF-----AKGF----LVYPGSTVYLVF  142 (172)
Q Consensus        74 ~~a~I~G--~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~-----~~g~----~~~pGd~V~IG~  142 (172)
                      ..++++.  ..|+.||++++|+++|+|. |...|+||++|.|+++|.|+.+.+..     ..+.    .+.+||+|+||.
T Consensus        61 i~~p~~~~~G~ni~IG~~~~I~~~~~I~-d~~~I~IG~~~~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~iG~  139 (182)
T d1ocxa_          61 IEPTFRCDYGYNIFLGNNFFANFDCVML-DVCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGG  139 (182)
T ss_dssp             ECSCEEESSSTTEEECSSEEECSSEEEE-CSSCEEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTTCEECT
T ss_pred             EECCEEEEeccceeECCccEECCCcEEe-cCCeEEECCCeEECcCceEeecccccceeeeeccceEcceeEECceEeeCc
Confidence            4555533  3799999999999999996 55679999999999999999776533     1111    245699999999


Q ss_pred             CcEEEecCCCeEECCCceeCCeEE
Q psy2215         143 TASVRLKSPFAQIYSYIIAPCPLH  166 (172)
Q Consensus       143 navI~i~~pga~IGs~v~iga~i~  166 (172)
                      +|+|.   |+++||+++++|+...
T Consensus       140 ~~~I~---~Gv~IG~~~vIgagsv  160 (182)
T d1ocxa_         140 RAVIN---PGVTIGDNVVVASGAV  160 (182)
T ss_dssp             TCEEC---TTCEECTTCEECTTCE
T ss_pred             eeecc---CcEEECCCCEECCCCE
Confidence            99999   9999999999776543

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=2.8e-12  Score=88.52  Aligned_cols=67  Identities=18%  Similarity=0.223  Sum_probs=60.4

Q ss_pred             eEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEEC
Q psy2215          77 LVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIY  156 (172)
Q Consensus        77 ~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IG  156 (172)
                      .|.|  ++.||.++.|+++++|+|+   +.||++|.||+||+|+.          ..+||+++|+++|+|+    ++.||
T Consensus        10 ~I~g--~v~IG~~~~I~~~~~i~g~---~~IG~~v~Ig~~~~i~~----------~~Ig~~~~I~~~s~i~----~~~Ig   70 (78)
T d1fxja1          10 DLRG--TLTHGRDVEIDTNVIIEGN---VTLGHRVKIGTGCVIKN----------SVIGDDCEISPYTVVE----DANLA   70 (78)
T ss_dssp             EEEE--EEEECSSCEECTTEEEEEE---EEECTTCEECTTCEEES----------CEECTTCEECTTCEEE----SEEEC
T ss_pred             EEec--cEEECCCCEECCccEEeCC---cEECCCCEECCCeEEec----------CEECCCCEEcCCcEEE----CCEEC
Confidence            3555  6899999999999999987   99999999999999985          3469999999999999    99999


Q ss_pred             CCceeC
Q psy2215         157 SYIIAP  162 (172)
Q Consensus       157 s~v~ig  162 (172)
                      +++.+|
T Consensus        71 ~~~~IG   76 (78)
T d1fxja1          71 AACTIG   76 (78)
T ss_dssp             TTCEES
T ss_pred             CCCEEC
Confidence            999887

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.07  E-value=2.4e-10  Score=86.84  Aligned_cols=94  Identities=23%  Similarity=0.271  Sum_probs=73.9

Q ss_pred             ccCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccC---------CCce---EEee
Q psy2215          67 ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF---------AKGF---LVYP  134 (172)
Q Consensus        67 ~~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~---------~~g~---~~~p  134 (172)
                      .++..|.+.+.|.|  ++.||+++.|+++|+|+++..++.||++|.+++++.++......         ....   .+.+
T Consensus        14 ~~~~~I~~~a~I~g--~v~IG~~~~Ig~~~~I~~~~~~v~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I   91 (173)
T d1v3wa_          14 HPSAFVDENAVVIG--DVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAKV   91 (173)
T ss_dssp             CTTCEECTTSEEEE--EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEESCEE
T ss_pred             CcCcEECCCCEEeC--ceEECCCCEECCCccccccccccccccccccccccccccccCCCcccCcceeeeeeeeeeeeec
Confidence            35556777888887  79999999999999999877789999999999999998543210         1111   1345


Q ss_pred             CCCeEECCCcEEEecCCCeEECCCceeCCeE
Q psy2215         135 GSTVYLVFTASVRLKSPFAQIYSYIIAPCPL  165 (172)
Q Consensus       135 Gd~V~IG~navI~i~~pga~IGs~v~iga~i  165 (172)
                      |++|+||++|+|.   |+++||+++++|+..
T Consensus        92 g~~~~ig~~~~i~---~gv~Ig~~~vIgags  119 (173)
T d1v3wa_          92 GNYVIIGISSVIL---DGAKIGDHVIIGAGA  119 (173)
T ss_dssp             CSSEEECTTCEEC---TTCEECSSEEECTTC
T ss_pred             CCcccccceeeec---CCEEEcceeEEcCCc
Confidence            9999999999999   999999999966554

>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Putative acetyltransferase/acyltransferase BC4754
species: Bacillus cereus [TaxId: 1396]

Probab=99.04  E-value=4.7e-10  Score=85.23  Aligned_cols=94  Identities=12%  Similarity=0.087  Sum_probs=72.6

Q ss_pred             ccCCeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccC---------CCceE---Eee
Q psy2215          67 ASGNKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKF---------AKGFL---VYP  134 (172)
Q Consensus        67 ~~gn~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~---------~~g~~---~~p  134 (172)
                      .++..|.+.+.|.|  ++.||+++.|+++|+|+++...+.||++|.+++++.++.....-         .....   ...
T Consensus        16 g~~~~I~~~a~I~~--~v~IG~~~~Ig~~~~I~~~~~~i~IG~~~~i~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~i   93 (172)
T d1xhda_          16 ASSAFIADYVTITG--DVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHSCHI   93 (172)
T ss_dssp             CTTCEECTTCEEEE--EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEESCEE
T ss_pred             CCCcEECCCCEEeC--CEEECCCcEecCCcccccccccccccceeeeeeeceeccCCcCCeeeeeeeeeeeeeccccccc
Confidence            35556777888877  79999999999999999887789999999999999888653210         00110   134


Q ss_pred             CCCeEECCCcEEEecCCCeEECCCceeCCeE
Q psy2215         135 GSTVYLVFTASVRLKSPFAQIYSYIIAPCPL  165 (172)
Q Consensus       135 Gd~V~IG~navI~i~~pga~IGs~v~iga~i  165 (172)
                      +++|+||.+++|.   ++++||+++.+++..
T Consensus        94 ~~~~~ig~~~~i~---~gv~IG~~~~Igags  121 (172)
T d1xhda_          94 KKDALIGMGSIIL---DGAEIGEGAFIGAGS  121 (172)
T ss_dssp             CTTCEECTTCEEC---TTCEECTTCEECTTC
T ss_pred             ccceEEecccEee---CCcEEcCcccccceE
Confidence            8899999999988   999999999966544

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=99.03  E-value=6.3e-10  Score=87.03  Aligned_cols=31  Identities=19%  Similarity=0.131  Sum_probs=26.7

Q ss_pred             EeeCCCeEECCCcEEEecCCCeEECCCceeCCeE
Q psy2215         132 VYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCPL  165 (172)
Q Consensus       132 ~~pGd~V~IG~navI~i~~pga~IGs~v~iga~i  165 (172)
                      +.+|++|+||++|+|.   |+++||+++.+|+..
T Consensus       143 v~Ig~~~~IG~~s~I~---~~v~Ig~~~~Igags  173 (193)
T d3bswa1         143 VKIGKNCFLGINSCVL---PNLSLADDSILGGGA  173 (193)
T ss_dssp             CEECTTCEECTTCEEC---TTCEECTTCEECTTC
T ss_pred             ceeeccccCCceeeEc---CCeEECCCCEECCCC
Confidence            3569999999999999   999999999976654

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

Probab=99.02  E-value=7.6e-10  Score=87.49  Aligned_cols=84  Identities=13%  Similarity=0.108  Sum_probs=69.2

Q ss_pred             ccCCeeecCCeEecc--cceEECCCeEECCCcEEcCCC--------------------cceEECCCCeeCCCCEEccCCc
Q psy2215          67 ASGNKVSRKSLVAGA--QNIVLTGKVIIQCDAVLRGDL--------------------ANIRTGRYCIISKGVVIRPPFK  124 (172)
Q Consensus        67 ~~gn~Is~~a~I~G~--~nI~Igg~v~I~~~avIrGdl--------------------~~V~IG~~c~Ig~navI~p~~~  124 (172)
                      -.+..|.+.+.|.|.  .++.||+++.|+++++|+...                    .++.||++|.||+++.|+++  
T Consensus        44 G~~~~Igp~~vIrgd~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~~v~IG~~~~i~g~--  121 (210)
T d1qrea_          44 GANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGP--  121 (210)
T ss_dssp             CTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEESEEECTTCEECTTCEEEEE--
T ss_pred             CCCCEEccCeeeecccCCceEEcccceeeeeeEeccceeeccccccccCccccccccccceeeccccccccccccccC--
Confidence            355567788888773  579999999999999996432                    15889999999999999876  


Q ss_pred             cCCCceEEeeCCCeEECCCcEEEecCCCeEECCCceeCC
Q psy2215         125 KFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPC  163 (172)
Q Consensus       125 ~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~iga  163 (172)
                             +.+||+|+||++++|.    +++||+++.+++
T Consensus       122 -------~~IGd~~~IG~gs~i~----~~~IG~~~vIg~  149 (210)
T d1qrea_         122 -------AAVGDDTFIGMQAFVF----KSKVGNNCVLEP  149 (210)
T ss_dssp             -------EEECTTCEECTTCEEE----EEEECTTCEECT
T ss_pred             -------CcccCCcEeeCCcccc----ccccccCcEEec
Confidence                   5679999999999999    788998888654

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=4e-10  Score=77.38  Aligned_cols=52  Identities=25%  Similarity=0.335  Sum_probs=41.6

Q ss_pred             EEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEE--ecCCCeEECCCce
Q psy2215          97 VLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVR--LKSPFAQIYSYII  160 (172)
Q Consensus        97 vIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~--i~~pga~IGs~v~  160 (172)
                      .|+|+   +.||++|.|+++++|+++         +.+|++|.||++|+|+  .++.+++|+++++
T Consensus        10 ~I~g~---v~IG~~~~I~~~~~i~g~---------~~IG~~v~Ig~~~~i~~~~Ig~~~~I~~~s~   63 (78)
T d1fxja1          10 DLRGT---LTHGRDVEIDTNVIIEGN---------VTLGHRVKIGTGCVIKNSVIGDDCEISPYTV   63 (78)
T ss_dssp             EEEEE---EEECSSCEECTTEEEEEE---------EEECTTCEECTTCEEESCEECTTCEECTTCE
T ss_pred             EEecc---EEECCCCEECCccEEeCC---------cEECCCCEECCCeEEecCEECCCCEEcCCcE
Confidence            46776   999999999999999987         6679999999999999  4455555554444

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

Probab=98.89  E-value=5.7e-09  Score=84.97  Aligned_cols=73  Identities=12%  Similarity=0.085  Sum_probs=47.1

Q ss_pred             CeeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCcc------------------CCC---
Q psy2215          70 NKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKK------------------FAK---  128 (172)
Q Consensus        70 n~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~------------------~~~---  128 (172)
                      ..|++.+.|..  ++.||+++.|+++|+|.++   +.||++|.|+++|+|+.....                  +..   
T Consensus         6 ~~I~p~a~I~~--~~~Ig~~v~Ig~~~~I~~~---v~Ig~~~~I~~~~~I~~~~~ig~~~~i~~~~~~~~~~~~~~~~~~   80 (262)
T d2jf2a1           6 AFVHPTAIVEE--GASIGANAHIGPFCIVGPH---VEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGE   80 (262)
T ss_dssp             CEECTTCEECT--TCEECTTCEECTTCEECTT---EEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCCCTTCCSC
T ss_pred             CEECCCCEECC--CCEECCCCEECCCCEECCC---CEECCCCEEeCCEEEcCCccccccceeeeecccceeecccccccc
Confidence            34556665543  5777888888888888766   777777777777777643221                  000   


Q ss_pred             ceEEeeCCCeEECCCcEEE
Q psy2215         129 GFLVYPGSTVYLVFTASVR  147 (172)
Q Consensus       129 g~~~~pGd~V~IG~navI~  147 (172)
                      .-.+.+||+|.||++|.|.
T Consensus        81 ~~~v~IG~~v~ig~~~~i~   99 (262)
T d2jf2a1          81 PTRVEIGDRNRIRESVTIH   99 (262)
T ss_dssp             CCEEEECSSCEECTTCEEE
T ss_pred             CceEEECCeeeecceEecc
Confidence            0014558888888888886

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

Probab=98.87  E-value=3.7e-09  Score=85.49  Aligned_cols=29  Identities=14%  Similarity=0.066  Sum_probs=22.2

Q ss_pred             eCCCeEECCCcEEEecCCCeEECCCceeCCeE
Q psy2215         134 PGSTVYLVFTASVRLKSPFAQIYSYIIAPCPL  165 (172)
Q Consensus       134 pGd~V~IG~navI~i~~pga~IGs~v~iga~i  165 (172)
                      +||+|+||.++.|.   |+++||+++.+|+..
T Consensus       142 Ig~~v~IG~~s~I~---~gv~IG~~a~IgagS  170 (259)
T d1j2za_         142 IGDYVNIGGLTAIH---QFVRIAKGCMIAGKS  170 (259)
T ss_dssp             ECSSCEECTTCEEC---TTCEECTTCEECTTC
T ss_pred             ccccceecceeeee---cccEeccceeeeeee
Confidence            47777777777777   888888888876643

>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.77  E-value=1.4e-08  Score=80.42  Aligned_cols=82  Identities=18%  Similarity=0.141  Sum_probs=57.5

Q ss_pred             cceEECCCeEECCCc--------EE-----cCCCcceEECCCCeeCCCCEEccCCccC----------------------
Q psy2215          82 QNIVLTGKVIIQCDA--------VL-----RGDLANIRTGRYCIISKGVVIRPPFKKF----------------------  126 (172)
Q Consensus        82 ~nI~Igg~v~I~~~a--------vI-----rGdl~~V~IG~~c~Ig~navI~p~~~~~----------------------  126 (172)
                      +||.||+++++....        ..     .++..++.||++|.|+++|+|.......                      
T Consensus        19 pNi~IGd~t~i~~~~~~~~~~~~~~~~~~~~~~~~~v~IG~~~~I~~g~~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   98 (208)
T d1xata_          19 PNIRVGRYSYYSGYYHGHSFDDCARYLMPDRDDVDKLVIGSFCSIGSGAAFIMAGNQGHRAEWASTFPFHFMHEEPAFAG   98 (208)
T ss_dssp             TTEEECTTCEECCTTTCCCGGGGEETCCSSCSSSCCEEECSSCEECTTCEEECSTTTTCCTTSSCCSCGGGCCSCGGGGG
T ss_pred             CCcEECCCeeECCcccCCccccceEEecCCCCCcCeeEECCCCEECCCCEEeccCCCcccccceeecccccccccccccc
Confidence            378888888876432        11     1222369999999999999985321100                      


Q ss_pred             ------CCceEEeeCCCeEECCCcEEEecCCCeEECCCceeCCeEEe
Q psy2215         127 ------AKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPCPLHV  167 (172)
Q Consensus       127 ------~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~iga~i~~  167 (172)
                            ..| .+.+||+|+||.+|+|.   |+++||+++.+||...-
T Consensus        99 ~~~~~~~~g-~v~Igd~v~IG~~s~I~---~gv~IG~~~vIgagSvV  141 (208)
T d1xata_          99 AVNGYQPAG-DTLIGHEVWIGTEAMFM---PGVRVGHGAIIGSRALV  141 (208)
T ss_dssp             CCCCCCCCC-CEEECTTCEECTTCEEC---TTCEECTTCEECTTCEE
T ss_pred             cccCccccC-CEEEcCCeEECcccccc---CCeEeCCCCEEeCceEE
Confidence                  000 14569999999999999   99999999998776543

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

Probab=98.72  E-value=1.2e-08  Score=80.10  Aligned_cols=60  Identities=18%  Similarity=0.194  Sum_probs=44.4

Q ss_pred             ceEECCCCeeCCCCEEccCCcc--C------------------------CCceEEeeCCCeEECCCcEEEecCCCeEECC
Q psy2215         104 NIRTGRYCIISKGVVIRPPFKK--F------------------------AKGFLVYPGSTVYLVFTASVRLKSPFAQIYS  157 (172)
Q Consensus       104 ~V~IG~~c~Ig~navI~p~~~~--~------------------------~~g~~~~pGd~V~IG~navI~i~~pga~IGs  157 (172)
                      ++.||++|.|+++|+|......  .                        ...-.+.+||+|+||.+|+|.   |+++||+
T Consensus        60 ~v~IG~~~~Ig~gv~I~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~g~v~IGd~v~IG~~~~I~---~gv~IG~  136 (203)
T d1mr7a_          60 KLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIM---PGVKIGD  136 (203)
T ss_dssp             CEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTTGGGGCCCGGGSCCCCCEEECSSCEECTTCEEC---TTCEECT
T ss_pred             ccEECCCeEECCCCcEeeecCcEeccCceEeeeeecccccCcccccccccCccCeEECCEEEECCceeEE---eEEEEcC
Confidence            4999999999999998522110  0                        000124569999999999998   9999999


Q ss_pred             CceeCCeEE
Q psy2215         158 YIIAPCPLH  166 (172)
Q Consensus       158 ~v~iga~i~  166 (172)
                      ++.++|...
T Consensus       137 ~~~IgagSv  145 (203)
T d1mr7a_         137 GAIVAANSV  145 (203)
T ss_dssp             TCEECTTCE
T ss_pred             CCEEecCeE
Confidence            999776543

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=98.70  E-value=2.6e-08  Score=77.56  Aligned_cols=77  Identities=12%  Similarity=0.102  Sum_probs=44.0

Q ss_pred             eeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecC
Q psy2215          71 KVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKS  150 (172)
Q Consensus        71 ~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~  150 (172)
                      .|++.+.|.....|.++.+++|+++++|..+   +.||++|.|..++.|..+         ..+|++++|++++.+.   
T Consensus        76 ~I~p~a~I~~~~~I~~g~g~~I~~~~~I~~~---~~Ig~~~~I~~~~~I~~~---------~~Ig~~~~i~~~~~i~---  140 (193)
T d3bswa1          76 LIHKSALISPSAIVEENAGILIMPYVVINAK---AKIEKGVILNTSSVIEHE---------CVIGEFSHVSVGAKCA---  140 (193)
T ss_dssp             EECTTCEECTTSEECTTSCCEECTTCEECTT---CEECTTCEECTTCEECTT---------CEECTTCEECTTCEEC---
T ss_pred             ecCCCcEEeeeeEEccccCceEeeeeeecCC---ceeeecccccccccccee---------eecccccccccccccc---
Confidence            3555665544323333445667777776655   667777777777777665         2345666666666555   


Q ss_pred             CCeEECCCceeC
Q psy2215         151 PFAQIYSYIIAP  162 (172)
Q Consensus       151 pga~IGs~v~ig  162 (172)
                      ..++||++|.+|
T Consensus       141 g~v~Ig~~~~IG  152 (193)
T d3bswa1         141 GNVKIGKNCFLG  152 (193)
T ss_dssp             TTCEECTTCEEC
T ss_pred             ccceeeccccCC
Confidence            445555555533

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

Probab=98.69  E-value=2.5e-08  Score=81.05  Aligned_cols=33  Identities=12%  Similarity=0.203  Sum_probs=16.1

Q ss_pred             CCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccC
Q psy2215          87 TGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPP  122 (172)
Q Consensus        87 gg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~  122 (172)
                      ++++.|+|+|+|..+   +.||++|.|||+|+|+++
T Consensus         3 ~~~~~I~p~a~I~~~---~~Ig~~v~Ig~~~~I~~~   35 (262)
T d2jf2a1           3 DKSAFVHPTAIVEEG---ASIGANAHIGPFCIVGPH   35 (262)
T ss_dssp             CTTCEECTTCEECTT---CEECTTCEECTTCEECTT
T ss_pred             CCCCEECCCCEECCC---CEECCCCEECCCCEECCC
Confidence            344555555555443   444444444444444444

>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Serine acetyltransferase
domain: Serine acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

Probab=98.68  E-value=4.3e-08  Score=79.50  Aligned_cols=81  Identities=14%  Similarity=0.037  Sum_probs=56.8

Q ss_pred             ceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCc-----eEEeeCCCeEECCCcEEEecCCCeEECC
Q psy2215          83 NIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKG-----FLVYPGSTVYLVFTASVRLKSPFAQIYS  157 (172)
Q Consensus        83 nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g-----~~~~pGd~V~IG~navI~i~~pga~IGs  157 (172)
                      ++.|+.++.|++++.|.- -..+.||+.+.||++|.|.........+     -...+||+|+||+||+|.   ++++||+
T Consensus       137 g~~I~~~~~Ig~g~~i~h-~~givig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~Ig~~v~IGaga~Il---g~v~IG~  212 (241)
T d1ssqa_         137 DVDIHPAAKIGHGIMFDH-ATGIVVGETSVIENDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKIL---GNIEVGK  212 (241)
T ss_dssp             SCEECTTCEECSSCEESS-CTTCEECTTCEECTTCEECTTCEEECCSSSCSSCSCEECTTCEECTTCEEE---SSCEECT
T ss_pred             eeccccCCEEccCcccCc-cceEEEeccceecCCeeecccccccccccCCCCCCCccCCCeEECCCCEEc---CCcEECC
Confidence            577788888888888852 2346666666666666666554321111     113569999999999999   9999999


Q ss_pred             CceeCCeEEe
Q psy2215         158 YIIAPCPLHV  167 (172)
Q Consensus       158 ~v~iga~i~~  167 (172)
                      ++.+||..--
T Consensus       213 ~a~IgAgsvV  222 (241)
T d1ssqa_         213 YAKIGANSVV  222 (241)
T ss_dssp             TCEECTTCEE
T ss_pred             CCEECCCCEE
Confidence            9998886543

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.68  E-value=5.4e-08  Score=73.18  Aligned_cols=81  Identities=14%  Similarity=0.197  Sum_probs=53.3

Q ss_pred             eecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEcc-----CCccCCCce--EEeeCCCeEECCCc
Q psy2215          72 VSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRP-----PFKKFAKGF--LVYPGSTVYLVFTA  144 (172)
Q Consensus        72 Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p-----~~~~~~~g~--~~~pGd~V~IG~na  144 (172)
                      |++++...+ .++.|++++.|+++|+|.+.   ++||++|.|+++++|..     ..... .+.  ...++++++||+++
T Consensus         4 i~P~s~~I~-~~v~Ig~~~~I~~~vvI~~~---v~IG~~~~I~~~~~i~~~~IG~~~~I~-~~~i~~~~~g~~~~Ig~~~   78 (196)
T d1g97a1           4 VNPEATYID-IDVEIASEVQIEANVTLKGQ---TKIGAETVLTNGTYVVDSTIGAGAVIT-NSMIEESSVADGVIVGPYA   78 (196)
T ss_dssp             SCGGGCEEC-TTCEECTTCEECTTCEEESS---CEECTTCEECTTCEEESCEECTTCEEC-SCEEESCEECTTCEECSSC
T ss_pred             eCCCeEEEC-CCcEECCCCEECCCCEECCC---cEECCCceEcCceEeeeeecccCcccc-ccceeeccccCcceeecce
Confidence            344443233 26788889999999999876   88888888888887753     22111 111  12348888888888


Q ss_pred             EEEecCCCeEECCCce
Q psy2215         145 SVRLKSPFAQIYSYII  160 (172)
Q Consensus       145 vI~i~~pga~IGs~v~  160 (172)
                      .+.   .++.|+.++.
T Consensus        79 ~i~---~~~~i~~~~~   91 (196)
T d1g97a1          79 HIR---PNSSLGAQVH   91 (196)
T ss_dssp             EEC---SSCEECTTCE
T ss_pred             ecc---ccccccccee
Confidence            887   6666666655

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

Probab=98.62  E-value=8.6e-08  Score=79.86  Aligned_cols=90  Identities=10%  Similarity=0.070  Sum_probs=59.6

Q ss_pred             cCCeeecCCeEecc---cceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCc
Q psy2215          68 SGNKVSRKSLVAGA---QNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTA  144 (172)
Q Consensus        68 ~gn~Is~~a~I~G~---~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~na  144 (172)
                      .|..|.+++.+.++   -+-.||+++.|+..++|...   ..||++|.|+.++.|+........ -++.++|+|+||++|
T Consensus       113 ~GayI~~~vVlmps~VNigA~ig~~~midt~a~vgs~---aqIG~~vhis~g~~igGvlep~~~-~p~iIed~~~IGa~s  188 (274)
T d3tdta_         113 QGAFIARNTVLMPSYVNIGAYVDEGTMVDTWATVGSC---AQIGKNVHLSGGVGIGGVLEPLQA-NPTIIEDNCFIGARS  188 (274)
T ss_dssp             TTCEECTTCEECSEEECTTCEECTTCEECTTEEECTT---CEECTTCEECTTCEECCSBTTBCS-SCCEECTTCEECTTC
T ss_pred             cCcEECCCcEEeeeEeccccEEcCCcEEcccceecce---eEECCCeEECCCcEEEeccccCCC-CCcEEecCcEeccCc
Confidence            44445555544332   22355666666666666655   788888888888888855433222 235679999999999


Q ss_pred             EEEecCCCeEECCCceeCCe
Q psy2215         145 SVRLKSPFAQIYSYIIAPCP  164 (172)
Q Consensus       145 vI~i~~pga~IGs~v~iga~  164 (172)
                      .|.   .++.||+++++++.
T Consensus       189 ~v~---egv~Vg~~avi~~g  205 (274)
T d3tdta_         189 EVV---EGVIVEEGSVISMG  205 (274)
T ss_dssp             EEC---TTCEECTTCEECTT
T ss_pred             eEe---cCEEecCceEeccc
Confidence            998   78888888875544

>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Putative acetyltransferase/acyltransferase BC4754
species: Bacillus cereus [TaxId: 1396]

Probab=98.61  E-value=5.5e-08  Score=73.46  Aligned_cols=38  Identities=21%  Similarity=0.232  Sum_probs=34.5

Q ss_pred             cceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccC
Q psy2215          82 QNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPP  122 (172)
Q Consensus        82 ~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~  122 (172)
                      .+..||++++|+++|+|.++   +.||++|.|+++|+|+..
T Consensus        11 ~~~~Ig~~~~I~~~a~I~~~---v~IG~~~~Ig~~~~I~~~   48 (172)
T d1xhda_          11 KKPKIASSAFIADYVTITGD---VYVGEESSIWFNTVIRGD   48 (172)
T ss_dssp             BCCEECTTCEECTTCEEEEE---EEECTTCEECTTCEEEEE
T ss_pred             cCCEECCCcEECCCCEEeCC---EEECCCcEecCCcccccc
Confidence            35789999999999999987   999999999999999854

>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Maltose O-acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=98.61  E-value=5.2e-08  Score=75.76  Aligned_cols=67  Identities=16%  Similarity=0.163  Sum_probs=56.4

Q ss_pred             eecCCeEecccceEECCCeEECCCcEEcCCCc---------------ceEECCCCeeCCCCEEccCCccCCCceEEeeCC
Q psy2215          72 VSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLA---------------NIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGS  136 (172)
Q Consensus        72 Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~---------------~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd  136 (172)
                      |...+.|.....|+||+++.|+++|.|..+..               +++||++|.||.+|+|.|+         +.+|+
T Consensus        81 I~~~~~I~d~~~I~IG~~~~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~iG~~~~I~~G---------v~IG~  151 (182)
T d1ocxa_          81 ANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPG---------VTIGD  151 (182)
T ss_dssp             ECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTTCEECTTCEECTT---------CEECT
T ss_pred             ECCCcEEecCCeEEECCCeEECcCceEeecccccceeeeeccceEcceeEECceEeeCceeeccCc---------EEECC
Confidence            44566776556899999999999999974421               7999999999999999998         55799


Q ss_pred             CeEECCCcEEE
Q psy2215         137 TVYLVFTASVR  147 (172)
Q Consensus       137 ~V~IG~navI~  147 (172)
                      ++.||++|+|.
T Consensus       152 ~~vIgagsvV~  162 (182)
T d1ocxa_         152 NVVVASGAVVT  162 (182)
T ss_dssp             TCEECTTCEEC
T ss_pred             CCEECCCCEEc
Confidence            99999999998

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

Probab=98.54  E-value=8.1e-08  Score=77.43  Aligned_cols=62  Identities=11%  Similarity=0.183  Sum_probs=47.2

Q ss_pred             eeecCCeEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEE
Q psy2215          71 KVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASV  146 (172)
Q Consensus        71 ~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI  146 (172)
                      +|++.|.|..  +..|++++.|+++|+|..+   +.||++|.|+++|+|++.         +.+|+++.|.++|+|
T Consensus         2 ~Ih~sAiI~~--~a~Ig~~V~IG~~~vIg~~---v~Ig~~~~I~~~v~I~~~---------t~IG~~~~i~~~~~I   63 (259)
T d1j2za_           2 KIAKTAIISP--KAEINKGVEIGEFCVIGDG---VKLDEGVKLHNNVTLQGH---------TFVGKNTEIFPFAVL   63 (259)
T ss_dssp             CBCTTCEECT--TSEECTTCEECTTCEECTT---CEECTTCEECTTCEECSE---------EEECTTCEECTTCEE
T ss_pred             cCCCCCEECC--CCEECCCCEECCCCEECCC---CEECCCCEECCCEEEeCC---------CEEeeecccCCccEE
Confidence            4666777665  4678888888888888766   888888888888888876         455777777777776

>d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Galactoside acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=1.4e-07  Score=74.28  Aligned_cols=67  Identities=19%  Similarity=0.176  Sum_probs=55.7

Q ss_pred             eecCCeEecccceEECCCeEECCCcEEcCCC---------------cceEECCCCeeCCCCEEccCCccCCCceEEeeCC
Q psy2215          72 VSRKSLVAGAQNIVLTGKVIIQCDAVLRGDL---------------ANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGS  136 (172)
Q Consensus        72 Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl---------------~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd  136 (172)
                      |...+.|.....|.||+++.|++++.|..+.               .++.||++|.||.+|+|.|+         +.+|+
T Consensus        83 I~~~~~I~~~~~i~IG~~v~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I~~G---------v~IG~  153 (200)
T d1krra_          83 ANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPG---------VTIGD  153 (200)
T ss_dssp             ECSCEEEECSSCEEECSSCEECSSCEEESEECCSSTTTCTTCCBEECCEEECTTCEECTTCEECTT---------CEECT
T ss_pred             ECceEEEecCCCcEeCCCccccceeEEecccccceecccccceeecceEEEccCcccceeeecccc---------cccCC
Confidence            3445666655679999999999999996431               27999999999999999998         55799


Q ss_pred             CeEECCCcEEE
Q psy2215         137 TVYLVFTASVR  147 (172)
Q Consensus       137 ~V~IG~navI~  147 (172)
                      ++.||++|+|.
T Consensus       154 ~~vIgagSvV~  164 (200)
T d1krra_         154 NSVIGAGSIVT  164 (200)
T ss_dssp             TCEECTTCEEC
T ss_pred             CcEEeCCCEEe
Confidence            99999999998

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.44  E-value=1.6e-07  Score=70.42  Aligned_cols=40  Identities=10%  Similarity=0.088  Sum_probs=29.7

Q ss_pred             ccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCC
Q psy2215          81 AQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPF  123 (172)
Q Consensus        81 ~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~  123 (172)
                      +..+.|++++.|+++++|...   +.|++++.||++|+|++..
T Consensus         6 P~s~~I~~~v~Ig~~~~I~~~---vvI~~~v~IG~~~~I~~~~   45 (196)
T d1g97a1           6 PEATYIDIDVEIASEVQIEAN---VTLKGQTKIGAETVLTNGT   45 (196)
T ss_dssp             GGGCEECTTCEECTTCEECTT---CEEESSCEECTTCEECTTC
T ss_pred             CCeEEECCCcEECCCCEECCC---CEECCCcEECCCceEcCce
Confidence            346677778888887777754   7777888888888887764

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.42  E-value=5.8e-07  Score=67.58  Aligned_cols=81  Identities=21%  Similarity=0.249  Sum_probs=65.5

Q ss_pred             cCCeeecCCeEecc-cceEECCCeEECCCcEEcCCCc------------------ceEECCCCeeCCCCEEccCCccCCC
Q psy2215          68 SGNKVSRKSLVAGA-QNIVLTGKVIIQCDAVLRGDLA------------------NIRTGRYCIISKGVVIRPPFKKFAK  128 (172)
Q Consensus        68 ~gn~Is~~a~I~G~-~nI~Igg~v~I~~~avIrGdl~------------------~V~IG~~c~Ig~navI~p~~~~~~~  128 (172)
                      ++..|...+.|.+. .++.++.++.+...+.+.....                  ++.||++|.||.+|+|.+.      
T Consensus        33 ~~~~Ig~~~~I~~~~~~v~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~g------  106 (173)
T d1v3wa_          33 EKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAKVGNYVIIGISSVILDG------  106 (173)
T ss_dssp             TTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEESCEECSSEEECTTCEECTT------
T ss_pred             CCCEECCCccccccccccccccccccccccccccccCCCcccCcceeeeeeeeeeeeecCCcccccceeeecCC------
Confidence            44456667777653 5788899999998888753211                  6899999999999999998      


Q ss_pred             ceEEeeCCCeEECCCcEEEecCCCeEECCCce
Q psy2215         129 GFLVYPGSTVYLVFTASVRLKSPFAQIYSYII  160 (172)
Q Consensus       129 g~~~~pGd~V~IG~navI~i~~pga~IGs~v~  160 (172)
                         +.+|+++.||++|+|.   +++.|+++++
T Consensus       107 ---v~Ig~~~vIgagsvV~---~~~~i~~~~i  132 (173)
T d1v3wa_         107 ---AKIGDHVIIGAGAVVP---PNKEIPDYSL  132 (173)
T ss_dssp             ---CEECSSEEECTTCEEC---TTCEECTTEE
T ss_pred             ---EEEcceeEEcCCcEEe---CCeEeCCCCE
Confidence               5579999999999999   8899999988

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.38  E-value=5.8e-07  Score=68.18  Aligned_cols=43  Identities=21%  Similarity=0.387  Sum_probs=38.2

Q ss_pred             eEecccceEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCc
Q psy2215          77 LVAGAQNIVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFK  124 (172)
Q Consensus        77 ~I~G~~nI~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~  124 (172)
                      .|.|  ++.||+++.|+++|+|.++   +.||++|.|+++|+|+....
T Consensus        10 ~i~~--~v~IG~~v~Ig~~vvI~~~---v~IG~~~~I~~~~~I~~~~~   52 (201)
T d2oi6a1          10 DLRG--TLTHGRDVEIDTNVIIEGN---VTLGHRVKIGTGCVIKNSVI   52 (201)
T ss_dssp             EEEE--EEEECSSCEECTTEEEEEE---EEECTTCEECTTCEEESCEE
T ss_pred             EECc--eEEECCCCEECCCCEECCc---eEECCCcEECCCEEEeeecc
Confidence            5777  5999999999999999987   99999999999999996643

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=98.34  E-value=6.3e-07  Score=65.40  Aligned_cols=68  Identities=15%  Similarity=0.078  Sum_probs=34.0

Q ss_pred             eEECCCcEEcCC-CcceEECCCCeeCCCCEEccCCccCCCce----E-----EeeCCCeEECCCcEEEecCCCeEECCCc
Q psy2215          90 VIIQCDAVLRGD-LANIRTGRYCIISKGVVIRPPFKKFAKGF----L-----VYPGSTVYLVFTASVRLKSPFAQIYSYI  159 (172)
Q Consensus        90 v~I~~~avIrGd-l~~V~IG~~c~Ig~navI~p~~~~~~~g~----~-----~~pGd~V~IG~navI~i~~pga~IGs~v  159 (172)
                      +.|+++|+|++. +.+..||++|.|++++.|++.......-+    .     ...++++.||++|.|.    ++.|++++
T Consensus        15 s~Ig~g~~I~~~~i~~s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~v~Ig~~~~I~----~~iIg~~~   90 (135)
T d1yp2a1          15 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIK----RAIIDKNA   90 (135)
T ss_dssp             EEECTTCEEEEEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEE----SEEECTTC
T ss_pred             CEECCCCEEeCCEEeccccCCcEEECCCCEEEcCEEECCCEEeCCcEEEecceEcCCCCEECcceEec----cceecCCC
Confidence            444444444321 12466777777777777776532110000    0     0125667777777777    44444444


Q ss_pred             ee
Q psy2215         160 IA  161 (172)
Q Consensus       160 ~i  161 (172)
                      .+
T Consensus        91 ~I   92 (135)
T d1yp2a1          91 RI   92 (135)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.31  E-value=2.8e-06  Score=64.28  Aligned_cols=29  Identities=7%  Similarity=-0.027  Sum_probs=25.2

Q ss_pred             eeCCCeEECCCcEEEecCCCeEECCCceeCCe
Q psy2215         133 YPGSTVYLVFTASVRLKSPFAQIYSYIIAPCP  164 (172)
Q Consensus       133 ~pGd~V~IG~navI~i~~pga~IGs~v~iga~  164 (172)
                      .+||+|+||.++.|.   |+++||+++.+++.
T Consensus       145 ~Ig~~v~iG~~~~I~---~~v~IG~~s~Igag  173 (201)
T d2oi6a1         145 IIGDDVFVGSDTQLV---APVTVGKGATIAAG  173 (201)
T ss_dssp             EECTTCEECTTCEEE---SSEEECTTCEECTT
T ss_pred             EeCCcEEEeEeeeEc---CCcEECCCCEECCC
Confidence            459999999999999   99999999996654

>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Serine acetyltransferase
domain: Serine acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

Probab=98.27  E-value=2.1e-06  Score=69.28  Aligned_cols=69  Identities=16%  Similarity=0.167  Sum_probs=49.9

Q ss_pred             CeeecCCeEecccceEECCCeEECCCcEEcCCC-----------cceEECCCCeeCCCCEEccCCccCCCceEEeeCCCe
Q psy2215          70 NKVSRKSLVAGAQNIVLTGKVIIQCDAVLRGDL-----------ANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTV  138 (172)
Q Consensus        70 n~Is~~a~I~G~~nI~Igg~v~I~~~avIrGdl-----------~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V  138 (172)
                      .+|.+...|.-..++.||+++.|+.++.|...+           .+++||++|.||.|++|.++         +.+||++
T Consensus       144 ~~Ig~g~~i~h~~givig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~Ig~~v~IGaga~Ilg~---------v~IG~~a  214 (241)
T d1ssqa_         144 AKIGHGIMFDHATGIVVGETSVIENDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGN---------IEVGKYA  214 (241)
T ss_dssp             CEECSSCEESSCTTCEECTTCEECTTCEECTTCEEECCSSSCSSCSCEECTTCEECTTCEEESS---------CEECTTC
T ss_pred             CEEccCcccCccceEEEeccceecCCeeecccccccccccCCCCCCCccCCCeEECCCCEEcCC---------cEECCCC
Confidence            333334444223467777777777666664222           26899999999999999988         5679999


Q ss_pred             EECCCcEEE
Q psy2215         139 YLVFTASVR  147 (172)
Q Consensus       139 ~IG~navI~  147 (172)
                      .||+|++|.
T Consensus       215 ~IgAgsvV~  223 (241)
T d1ssqa_         215 KIGANSVVL  223 (241)
T ss_dssp             EECTTCEEC
T ss_pred             EECCCCEEC
Confidence            999999999

>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.15  E-value=3.4e-06  Score=66.32  Aligned_cols=57  Identities=18%  Similarity=0.133  Sum_probs=48.1

Q ss_pred             cceEECCCeEECCCcEEcCC---------------------------------CcceEECCCCeeCCCCEEccCCccCCC
Q psy2215          82 QNIVLTGKVIIQCDAVLRGD---------------------------------LANIRTGRYCIISKGVVIRPPFKKFAK  128 (172)
Q Consensus        82 ~nI~Igg~v~I~~~avIrGd---------------------------------l~~V~IG~~c~Ig~navI~p~~~~~~~  128 (172)
                      .++.||.+|.|+++|+|...                                 ..++.||++|.||.+|+|.++      
T Consensus        53 ~~v~IG~~~~I~~g~~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~Igd~v~IG~~s~I~~g------  126 (208)
T d1xata_          53 DKLVIGSFCSIGSGAAFIMAGNQGHRAEWASTFPFHFMHEEPAFAGAVNGYQPAGDTLIGHEVWIGTEAMFMPG------  126 (208)
T ss_dssp             CCEEECSSCEECTTCEEECSTTTTCCTTSSCCSCGGGCCSCGGGGGCCCCCCCCCCEEECTTCEECTTCEECTT------
T ss_pred             CeeEECCCCEECCCCEEeccCCCcccccceeecccccccccccccccccCccccCCEEEcCCeEECccccccCC------
Confidence            46899999999999988311                                 015899999999999999998      


Q ss_pred             ceEEeeCCCeEECCCcEEE
Q psy2215         129 GFLVYPGSTVYLVFTASVR  147 (172)
Q Consensus       129 g~~~~pGd~V~IG~navI~  147 (172)
                         +.+|++|+||++|+|.
T Consensus       127 ---v~IG~~~vIgagSvVt  142 (208)
T d1xata_         127 ---VRVGHGAIIGSRALVT  142 (208)
T ss_dssp             ---CEECTTCEECTTCEEC
T ss_pred             ---eEeCCCCEEeCceEEe
Confidence               5579999999999998

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

Probab=98.15  E-value=2e-06  Score=66.98  Aligned_cols=56  Identities=20%  Similarity=0.147  Sum_probs=47.8

Q ss_pred             ceEECCCeEECCCcEEcCC--------------------------------CcceEECCCCeeCCCCEEccCCccCCCce
Q psy2215          83 NIVLTGKVIIQCDAVLRGD--------------------------------LANIRTGRYCIISKGVVIRPPFKKFAKGF  130 (172)
Q Consensus        83 nI~Igg~v~I~~~avIrGd--------------------------------l~~V~IG~~c~Ig~navI~p~~~~~~~g~  130 (172)
                      ++.||.+|.|+++|.|..+                                ..++.||++|.||.+|+|.++        
T Consensus        60 ~v~IG~~~~Ig~gv~I~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~g~v~IGd~v~IG~~~~I~~g--------  131 (203)
T d1mr7a_          60 KLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPG--------  131 (203)
T ss_dssp             CEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTTGGGGCCCGGGSCCCCCEEECSSCEECTTCEECTT--------
T ss_pred             ccEECCCeEECCCCcEeeecCcEeccCceEeeeeecccccCcccccccccCccCeEECCEEEECCceeEEeE--------
Confidence            6899999999999988411                                015899999999999999998        


Q ss_pred             EEeeCCCeEECCCcEEE
Q psy2215         131 LVYPGSTVYLVFTASVR  147 (172)
Q Consensus       131 ~~~pGd~V~IG~navI~  147 (172)
                       +.+|+++.||++|+|.
T Consensus       132 -v~IG~~~~IgagSvV~  147 (203)
T d1mr7a_         132 -VKIGDGAIVAANSVVV  147 (203)
T ss_dssp             -CEECTTCEECTTCEEC
T ss_pred             -EEEcCCCEEecCeEEe
Confidence             5579999999999998

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=98.06  E-value=1.5e-05  Score=57.78  Aligned_cols=18  Identities=17%  Similarity=0.183  Sum_probs=11.4

Q ss_pred             ceEECCCeEECCCcEEcC
Q psy2215          83 NIVLTGKVIIQCDAVLRG  100 (172)
Q Consensus        83 nI~Igg~v~I~~~avIrG  100 (172)
                      +-.||.++.|++++.|+.
T Consensus        30 ~s~IG~~~~Ig~~~~I~~   47 (135)
T d1yp2a1          30 HSVVGLRSCISEGAIIED   47 (135)
T ss_dssp             SCEECTTCEECTTCEEES
T ss_pred             ccccCCcEEECCCCEEEc
Confidence            445666666666666663

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

Probab=97.81  E-value=3.3e-05  Score=63.90  Aligned_cols=83  Identities=16%  Similarity=0.168  Sum_probs=57.6

Q ss_pred             ccccccCCeeecCCeE-----ecccceEECCCeEECCCcEEcCCCc-----ceEECCCCeeCCCCEEccCCccCCCceEE
Q psy2215          63 SGAVASGNKVSRKSLV-----AGAQNIVLTGKVIIQCDAVLRGDLA-----NIRTGRYCIISKGVVIRPPFKKFAKGFLV  132 (172)
Q Consensus        63 ~~~~~~gn~Is~~a~I-----~G~~nI~Igg~v~I~~~avIrGdl~-----~V~IG~~c~Ig~navI~p~~~~~~~g~~~  132 (172)
                      +.+...|..+...+-|     .|+ -..||.++.|..++.|.|.+.     |+.||++|.||.+|.|..+         +
T Consensus       125 ps~VNigA~ig~~~midt~a~vgs-~aqIG~~vhis~g~~igGvlep~~~~p~iIed~~~IGa~s~v~eg---------v  194 (274)
T d3tdta_         125 PSYVNIGAYVDEGTMVDTWATVGS-CAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEVVEG---------V  194 (274)
T ss_dssp             SEEECTTCEECTTCEECTTEEECT-TCEECTTCEECTTCEECCSBTTBCSSCCEECTTCEECTTCEECTT---------C
T ss_pred             eeEeccccEEcCCcEEcccceecc-eeEECCCeEECCCcEEEeccccCCCCCcEEecCcEeccCceEecC---------E
Confidence            4555566555444333     232 357778888888888877654     8899999999999999987         4


Q ss_pred             eeCCCeEECCCcEEEecCCCeEECCC
Q psy2215         133 YPGSTVYLVFTASVRLKSPFAQIYSY  158 (172)
Q Consensus       133 ~pGd~V~IG~navI~i~~pga~IGs~  158 (172)
                      .+|+++.||+|++|.   ..+.|.+.
T Consensus       195 ~Vg~~avi~~gv~i~---~~t~i~d~  217 (274)
T d3tdta_         195 IVEEGSVISMGVYLG---QSTRIYDR  217 (274)
T ss_dssp             EECTTCEECTTCEEC---TTCCEEET
T ss_pred             EecCceEeccceEEe---ccccceec
Confidence            568888888888877   44444433

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

Probab=97.48  E-value=0.00016  Score=59.02  Aligned_cols=72  Identities=8%  Similarity=-0.025  Sum_probs=37.6

Q ss_pred             eEECCCeEECCCcEEcCCCcceEECCCCeeCCCCEEccCCccCCCceEEeeCCCeEECCCcEEEecCCCeEECCCceeCC
Q psy2215          84 IVLTGKVIIQCDAVLRGDLANIRTGRYCIISKGVVIRPPFKKFAKGFLVYPGSTVYLVFTASVRLKSPFAQIYSYIIAPC  163 (172)
Q Consensus        84 I~Igg~v~I~~~avIrGdl~~V~IG~~c~Ig~navI~p~~~~~~~g~~~~pGd~V~IG~navI~i~~pga~IGs~v~iga  163 (172)
                      ..+++++.|+.++.|.+.   +.|+.+|.|++++.|.+......+  .+.+++++.|+.++.|.   +++.|++++.+++
T Consensus       224 ~~i~~~~~Ig~~a~I~g~---~~i~~~v~Ig~~a~i~G~~v~i~~--~~~I~~~a~I~g~~~I~---~~v~i~~~a~v~a  295 (320)
T d2f9ca1         224 PTLRYSSQVAEHALIEGN---CVLKHHVLVGGHAEVRGGPILLDD--RVLIEGHACIQGEILIE---RQVEISGRAAVIA  295 (320)
T ss_dssp             CEECSSCEECSSCEEESS---EEECTEEEECSSCEEESSSEEECS--EEEECSSCEEESSEEEC---SEEEECSSCEEEC
T ss_pred             cccccccccCcceeeeee---ccccCceEECCCeEEeCCeeEECC--ceEECCCcEEcccCEEe---CCCEECCCeEEEE
Confidence            344455555555555554   556666666666666543210000  02234455555555555   8888888888644

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

Probab=97.45  E-value=0.00017  Score=58.85  Aligned_cols=12  Identities=25%  Similarity=0.243  Sum_probs=4.3

Q ss_pred             CCeEECCCcEEc
Q psy2215          88 GKVIIQCDAVLR   99 (172)
Q Consensus        88 g~v~I~~~avIr   99 (172)
                      +++.|.++++|.
T Consensus        74 ~na~i~~~~~I~   85 (320)
T d2f9ca1          74 GNARITQPCTLY   85 (320)
T ss_dssp             TTCEECSSCEEC
T ss_pred             CCCEECCCcEEC
Confidence            333333333333